Query 043362
Match_columns 516
No_of_seqs 720 out of 3937
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 8E-112 2E-116 895.1 58.8 513 1-516 180-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-106 7E-111 871.9 58.1 509 1-514 345-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 9.9E-67 2.1E-71 564.1 34.9 489 1-509 143-677 (857)
4 PLN03081 pentatricopeptide (PP 100.0 9.6E-62 2.1E-66 513.4 44.3 476 9-511 84-583 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.3E-58 2.8E-63 492.9 45.0 481 1-495 392-912 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 4.6E-57 1E-61 481.0 42.5 384 1-387 428-848 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 3.3E-29 7.1E-34 197.3 8.1 101 387-506 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.2E-23 4.8E-28 229.6 42.9 364 10-382 497-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 5.2E-23 1.1E-27 226.6 43.6 362 10-380 463-832 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 5.9E-21 1.3E-25 182.2 26.5 358 12-380 116-485 (966)
11 PRK11788 tetratricopeptide rep 99.9 5.5E-20 1.2E-24 182.6 32.2 298 58-387 46-354 (389)
12 TIGR00990 3a0801s09 mitochondr 99.9 7.2E-19 1.6E-23 184.1 41.1 359 15-380 130-571 (615)
13 PRK11788 tetratricopeptide rep 99.9 4.8E-20 1.1E-24 183.1 30.3 258 119-380 41-311 (389)
14 KOG4626 O-linked N-acetylgluco 99.9 2E-19 4.3E-24 172.0 27.4 355 10-375 148-514 (966)
15 PRK15174 Vi polysaccharide exp 99.9 6.5E-18 1.4E-22 176.5 39.5 328 16-351 46-386 (656)
16 PRK15174 Vi polysaccharide exp 99.8 6E-17 1.3E-21 169.3 38.4 350 23-380 16-381 (656)
17 PRK11447 cellulose synthase su 99.8 2.2E-16 4.7E-21 176.2 44.1 348 20-379 359-739 (1157)
18 PRK11447 cellulose synthase su 99.8 1.2E-16 2.5E-21 178.3 41.9 354 19-381 276-701 (1157)
19 PRK10049 pgaA outer membrane p 99.8 5.5E-16 1.2E-20 165.5 41.8 189 192-380 246-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-15 4.7E-20 158.0 40.2 334 9-350 157-575 (615)
21 PRK10049 pgaA outer membrane p 99.8 1.1E-14 2.3E-19 155.7 39.3 337 11-353 48-463 (765)
22 PRK09782 bacteriophage N4 rece 99.7 6.7E-14 1.5E-18 150.1 41.4 360 9-381 178-707 (987)
23 PRK14574 hmsH outer membrane p 99.7 6.7E-14 1.4E-18 147.1 39.9 359 15-380 38-479 (822)
24 PRK14574 hmsH outer membrane p 99.7 1.5E-13 3.3E-18 144.5 40.4 361 17-380 73-513 (822)
25 PRK09782 bacteriophage N4 rece 99.7 3.7E-13 8.1E-18 144.4 38.0 346 26-382 356-742 (987)
26 KOG4422 Uncharacterized conser 99.6 3.4E-12 7.3E-17 118.0 32.4 331 10-347 205-591 (625)
27 PF13429 TPR_15: Tetratricopep 99.6 1.8E-15 3.9E-20 142.7 11.0 255 119-378 14-275 (280)
28 KOG2076 RNA polymerase III tra 99.6 5.2E-12 1.1E-16 127.1 33.3 328 59-390 151-522 (895)
29 PRK10747 putative protoheme IX 99.6 4E-12 8.6E-17 125.6 30.5 279 60-347 97-391 (398)
30 KOG2003 TPR repeat-containing 99.6 2.4E-12 5.3E-17 119.6 26.3 345 16-366 280-709 (840)
31 TIGR00540 hemY_coli hemY prote 99.5 3.9E-11 8.5E-16 119.2 34.2 282 59-345 96-398 (409)
32 PF13429 TPR_15: Tetratricopep 99.5 6.7E-14 1.5E-18 132.0 12.4 256 17-276 13-275 (280)
33 KOG4422 Uncharacterized conser 99.5 7.7E-11 1.7E-15 109.1 31.5 353 11-380 115-551 (625)
34 KOG2002 TPR-containing nuclear 99.5 4.8E-11 1E-15 121.1 32.8 368 9-382 267-677 (1018)
35 TIGR00540 hemY_coli hemY prote 99.5 2.5E-11 5.3E-16 120.6 30.7 292 15-311 85-396 (409)
36 PRK10747 putative protoheme IX 99.5 8.1E-11 1.7E-15 116.3 33.9 275 95-379 97-389 (398)
37 KOG1126 DNA-binding cell divis 99.5 4.3E-12 9.4E-17 123.9 22.4 276 97-382 334-622 (638)
38 KOG0495 HAT repeat protein [RN 99.5 4.6E-10 1E-14 109.3 35.9 369 13-393 517-891 (913)
39 KOG1126 DNA-binding cell divis 99.5 5.4E-12 1.2E-16 123.2 22.5 278 63-351 335-625 (638)
40 KOG2002 TPR-containing nuclear 99.5 1E-10 2.2E-15 118.8 31.4 369 20-395 207-608 (1018)
41 COG2956 Predicted N-acetylgluc 99.5 7.2E-11 1.6E-15 105.7 26.7 223 119-345 113-346 (389)
42 KOG2003 TPR repeat-containing 99.5 9.7E-11 2.1E-15 109.1 28.2 220 158-380 429-689 (840)
43 KOG1155 Anaphase-promoting com 99.5 5.3E-10 1.1E-14 104.8 32.0 326 45-379 162-494 (559)
44 KOG0547 Translocase of outer m 99.5 1.9E-10 4.1E-15 108.4 28.9 355 15-379 118-565 (606)
45 KOG2076 RNA polymerase III tra 99.5 3.5E-10 7.5E-15 114.2 32.6 355 22-380 150-555 (895)
46 KOG0495 HAT repeat protein [RN 99.4 3E-09 6.6E-14 103.7 36.4 353 25-391 389-791 (913)
47 PF13041 PPR_2: PPR repeat fam 99.4 2.8E-13 6.1E-18 90.4 5.9 50 10-59 1-50 (50)
48 COG2956 Predicted N-acetylgluc 99.4 4.8E-10 1E-14 100.5 26.3 215 26-242 49-277 (389)
49 COG3071 HemY Uncharacterized e 99.4 2.5E-09 5.3E-14 98.9 31.3 277 61-345 98-389 (400)
50 TIGR02521 type_IV_pilW type IV 99.4 1E-10 2.2E-15 106.9 22.7 197 182-379 30-231 (234)
51 KOG1155 Anaphase-promoting com 99.4 1.4E-09 3E-14 102.0 28.8 285 54-346 234-536 (559)
52 KOG1840 Kinesin light chain [C 99.3 4.1E-10 8.8E-15 111.2 24.7 232 148-379 199-478 (508)
53 KOG1915 Cell cycle control pro 99.3 1.8E-08 3.8E-13 95.0 32.9 375 9-390 104-510 (677)
54 PF13041 PPR_2: PPR repeat fam 99.3 8E-12 1.7E-16 83.4 6.9 50 212-261 1-50 (50)
55 COG3071 HemY Uncharacterized e 99.3 3.4E-09 7.4E-14 98.0 26.2 277 95-379 97-389 (400)
56 PRK12370 invasion protein regu 99.3 2.4E-09 5.2E-14 110.6 26.9 257 112-381 255-536 (553)
57 KOG4318 Bicoid mRNA stability 99.3 1.1E-09 2.4E-14 110.2 22.5 82 212-297 202-283 (1088)
58 KOG1173 Anaphase-promoting com 99.3 2.4E-09 5.1E-14 103.0 23.4 257 116-378 247-516 (611)
59 TIGR02521 type_IV_pilW type IV 99.3 1.6E-09 3.5E-14 98.9 22.0 194 47-242 31-231 (234)
60 PRK12370 invasion protein regu 99.2 3.6E-09 7.9E-14 109.2 26.4 258 45-312 254-533 (553)
61 KOG4318 Bicoid mRNA stability 99.2 5.6E-10 1.2E-14 112.2 18.9 258 134-432 11-270 (1088)
62 KOG1173 Anaphase-promoting com 99.2 8.1E-09 1.8E-13 99.4 25.1 282 16-328 248-533 (611)
63 KOG1174 Anaphase-promoting com 99.2 5.4E-08 1.2E-12 90.3 26.8 285 62-352 211-506 (564)
64 KOG1129 TPR repeat-containing 99.2 2.2E-09 4.7E-14 96.4 16.5 225 152-381 227-459 (478)
65 KOG1840 Kinesin light chain [C 99.1 2.2E-08 4.8E-13 99.1 23.9 227 119-345 205-478 (508)
66 KOG1129 TPR repeat-containing 99.1 3.4E-09 7.4E-14 95.1 15.9 229 117-350 227-462 (478)
67 KOG1915 Cell cycle control pro 99.1 1.1E-06 2.4E-11 83.2 33.0 363 18-393 147-546 (677)
68 PRK11189 lipoprotein NlpI; Pro 99.1 1.5E-08 3.3E-13 95.9 21.3 210 163-381 41-266 (296)
69 PRK11189 lipoprotein NlpI; Pro 99.1 9.3E-08 2E-12 90.5 25.0 216 127-350 40-269 (296)
70 KOG0547 Translocase of outer m 99.1 3.3E-07 7.2E-12 87.0 27.6 311 51-380 119-491 (606)
71 PF12569 NARP1: NMDA receptor- 99.0 1.3E-06 2.8E-11 87.7 33.0 255 20-278 12-334 (517)
72 KOG1174 Anaphase-promoting com 99.0 3.7E-06 8.1E-11 78.4 31.2 262 111-379 230-499 (564)
73 COG3063 PilF Tfp pilus assembl 99.0 4.2E-08 9.1E-13 84.4 17.3 163 216-382 37-204 (250)
74 PF12569 NARP1: NMDA receptor- 98.9 7.7E-07 1.7E-11 89.3 25.8 148 232-382 129-293 (517)
75 KOG2376 Signal recognition par 98.9 8E-06 1.7E-10 79.7 31.2 347 19-377 19-517 (652)
76 KOG1125 TPR repeat-containing 98.9 5.9E-08 1.3E-12 94.0 16.3 216 158-379 295-526 (579)
77 cd05804 StaR_like StaR_like; a 98.9 4.4E-06 9.6E-11 81.8 29.9 193 188-380 119-336 (355)
78 KOG1156 N-terminal acetyltrans 98.9 1E-05 2.2E-10 79.8 30.9 347 26-382 55-470 (700)
79 PF04733 Coatomer_E: Coatomer 98.9 3.1E-07 6.7E-12 85.8 20.1 245 95-351 14-270 (290)
80 KOG4162 Predicted calmodulin-b 98.9 7.8E-06 1.7E-10 82.1 30.3 365 11-380 322-783 (799)
81 KOG3785 Uncharacterized conser 98.8 1.1E-05 2.4E-10 73.8 27.7 117 261-382 371-492 (557)
82 cd05804 StaR_like StaR_like; a 98.8 1.4E-05 3.1E-10 78.2 30.9 197 12-210 6-213 (355)
83 PRK04841 transcriptional regul 98.8 6.9E-06 1.5E-10 91.0 31.6 324 58-381 385-761 (903)
84 KOG2047 mRNA splicing factor [ 98.8 5.6E-05 1.2E-09 74.6 33.1 161 216-379 389-578 (835)
85 KOG0548 Molecular co-chaperone 98.8 2.7E-06 5.8E-11 82.1 23.8 216 152-381 228-456 (539)
86 PF04733 Coatomer_E: Coatomer 98.8 1.8E-07 4E-12 87.3 15.9 244 121-379 9-264 (290)
87 COG3063 PilF Tfp pilus assembl 98.8 2.9E-06 6.3E-11 73.2 21.5 188 115-307 37-229 (250)
88 KOG2047 mRNA splicing factor [ 98.8 0.00011 2.5E-09 72.5 34.4 215 162-378 361-613 (835)
89 KOG4162 Predicted calmodulin-b 98.8 0.00021 4.7E-09 72.2 36.8 200 77-278 318-542 (799)
90 KOG0624 dsRNA-activated protei 98.8 2.3E-05 4.9E-10 71.6 27.1 304 19-351 45-375 (504)
91 KOG1156 N-terminal acetyltrans 98.7 0.00012 2.6E-09 72.5 31.1 362 11-382 7-436 (700)
92 KOG4340 Uncharacterized conser 98.7 2E-06 4.2E-11 76.8 17.1 303 50-376 13-335 (459)
93 KOG1070 rRNA processing protei 98.6 2.9E-06 6.3E-11 90.1 20.3 200 180-383 1455-1666(1710)
94 KOG4340 Uncharacterized conser 98.6 5.3E-05 1.1E-09 67.9 25.1 254 14-274 12-335 (459)
95 TIGR03302 OM_YfiO outer membra 98.6 4.5E-06 9.7E-11 76.5 19.2 181 182-380 32-232 (235)
96 PF12854 PPR_1: PPR repeat 98.6 6E-08 1.3E-12 58.1 4.1 33 77-109 2-34 (34)
97 PRK04841 transcriptional regul 98.6 7.7E-05 1.7E-09 82.8 31.9 326 23-349 385-763 (903)
98 KOG3616 Selective LIM binding 98.6 2.1E-05 4.6E-10 78.4 23.7 189 157-374 741-931 (1636)
99 KOG0985 Vesicle coat protein c 98.6 8.3E-05 1.8E-09 76.9 28.2 336 10-378 982-1368(1666)
100 PF12854 PPR_1: PPR repeat 98.6 8E-08 1.7E-12 57.5 4.3 33 178-210 2-34 (34)
101 KOG1070 rRNA processing protei 98.6 2.1E-05 4.6E-10 83.8 23.6 227 44-271 1455-1693(1710)
102 KOG2376 Signal recognition par 98.5 0.00031 6.7E-09 68.9 29.3 311 52-375 17-400 (652)
103 KOG3617 WD40 and TPR repeat-co 98.5 9.8E-06 2.1E-10 81.8 19.3 240 11-276 725-994 (1416)
104 PRK10370 formate-dependent nit 98.5 1.1E-05 2.3E-10 71.3 17.8 118 262-381 52-174 (198)
105 KOG1125 TPR repeat-containing 98.5 5.8E-06 1.3E-10 80.5 17.0 215 58-277 296-526 (579)
106 PRK15359 type III secretion sy 98.5 3.4E-06 7.4E-11 70.4 12.9 92 288-379 27-120 (144)
107 PRK15359 type III secretion sy 98.5 4.2E-06 9.1E-11 69.9 13.4 122 235-362 14-137 (144)
108 KOG1128 Uncharacterized conser 98.5 6.5E-06 1.4E-10 82.2 16.6 190 178-382 393-584 (777)
109 PLN02789 farnesyltranstransfer 98.5 7E-05 1.5E-09 71.1 22.7 215 115-364 39-268 (320)
110 KOG0985 Vesicle coat protein c 98.5 0.00051 1.1E-08 71.4 29.5 282 21-338 1057-1375(1666)
111 TIGR00756 PPR pentatricopeptid 98.4 3.1E-07 6.8E-12 55.8 4.3 35 13-47 1-35 (35)
112 KOG3785 Uncharacterized conser 98.4 0.00028 6.1E-09 64.9 24.7 344 19-377 29-419 (557)
113 PRK10370 formate-dependent nit 98.4 2.9E-05 6.3E-10 68.5 18.2 153 190-354 23-181 (198)
114 TIGR03302 OM_YfiO outer membra 98.4 2.4E-05 5.2E-10 71.7 18.0 182 146-348 31-234 (235)
115 KOG3617 WD40 and TPR repeat-co 98.4 0.00016 3.5E-09 73.3 24.2 326 10-374 755-1168(1416)
116 KOG1127 TPR repeat-containing 98.4 9.5E-05 2.1E-09 76.5 22.5 81 296-376 827-909 (1238)
117 PRK15179 Vi polysaccharide bio 98.4 3.4E-05 7.3E-10 80.7 19.8 182 156-355 36-226 (694)
118 KOG1128 Uncharacterized conser 98.4 5E-05 1.1E-09 76.1 19.7 218 77-312 393-614 (777)
119 KOG1127 TPR repeat-containing 98.4 6.7E-05 1.5E-09 77.6 21.0 362 11-377 525-949 (1238)
120 KOG0548 Molecular co-chaperone 98.4 0.0013 2.9E-08 64.0 28.6 339 9-363 33-472 (539)
121 PF13812 PPR_3: Pentatricopept 98.3 8.3E-07 1.8E-11 53.5 4.0 34 12-45 1-34 (34)
122 PRK14720 transcript cleavage f 98.3 0.00029 6.2E-09 74.7 24.7 168 47-243 31-198 (906)
123 PRK15363 pathogenicity island 98.3 1.6E-05 3.5E-10 65.5 12.2 95 285-379 35-131 (157)
124 PLN02789 farnesyltranstransfer 98.3 0.00075 1.6E-08 64.1 25.0 209 83-296 38-266 (320)
125 COG4783 Putative Zn-dependent 98.3 0.00053 1.1E-08 66.1 23.2 143 216-380 308-454 (484)
126 TIGR00756 PPR pentatricopeptid 98.3 1.8E-06 3.9E-11 52.4 4.5 34 114-147 1-34 (35)
127 COG5010 TadD Flp pilus assembl 98.3 0.00012 2.6E-09 64.8 17.4 117 255-373 106-224 (257)
128 COG4783 Putative Zn-dependent 98.2 0.00059 1.3E-08 65.7 23.2 177 198-379 252-436 (484)
129 KOG3060 Uncharacterized conser 98.2 0.00033 7.2E-09 61.6 18.9 165 186-355 55-229 (289)
130 COG5010 TadD Flp pilus assembl 98.2 0.00065 1.4E-08 60.3 20.7 156 152-311 70-228 (257)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.5E-05 1.4E-09 72.8 15.8 123 251-378 171-295 (395)
132 PRK14720 transcript cleavage f 98.2 0.00021 4.6E-09 75.6 20.7 214 112-362 30-268 (906)
133 KOG3616 Selective LIM binding 98.2 0.0013 2.9E-08 66.1 24.5 261 89-380 739-1024(1636)
134 TIGR02552 LcrH_SycD type III s 98.1 3.4E-05 7.5E-10 63.7 11.4 95 286-380 18-114 (135)
135 KOG1914 mRNA cleavage and poly 98.1 0.011 2.4E-07 57.9 32.5 159 216-377 368-536 (656)
136 PRK15179 Vi polysaccharide bio 98.1 0.00061 1.3E-08 71.5 22.5 128 113-243 86-217 (694)
137 PF01535 PPR: PPR repeat; Int 98.1 3.3E-06 7.1E-11 49.6 3.5 31 13-43 1-31 (31)
138 PF13812 PPR_3: Pentatricopept 98.1 5.8E-06 1.3E-10 49.7 4.5 33 114-146 2-34 (34)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.7E-09 70.9 15.7 124 85-210 172-295 (395)
140 KOG3081 Vesicle coat complex C 98.1 0.0045 9.8E-08 55.1 23.5 174 170-350 95-275 (299)
141 TIGR02552 LcrH_SycD type III s 98.0 0.00017 3.7E-09 59.5 13.4 113 236-352 5-120 (135)
142 KOG3081 Vesicle coat complex C 98.0 0.0018 3.8E-08 57.6 18.9 243 120-378 15-269 (299)
143 KOG2053 Mitochondrial inherita 97.9 0.037 8.1E-07 57.6 32.5 66 319-384 438-506 (932)
144 cd00189 TPR Tetratricopeptide 97.9 0.00014 3E-09 55.1 9.8 92 288-379 3-96 (100)
145 KOG0624 dsRNA-activated protei 97.9 0.023 5E-07 52.6 26.9 291 85-381 41-371 (504)
146 PF01535 PPR: PPR repeat; Int 97.8 2E-05 4.3E-10 46.1 3.4 31 114-144 1-31 (31)
147 PF09976 TPR_21: Tetratricopep 97.8 0.0016 3.5E-08 54.4 16.2 123 218-343 16-144 (145)
148 KOG1914 mRNA cleavage and poly 97.8 0.038 8.3E-07 54.3 28.9 128 11-142 19-166 (656)
149 PF04840 Vps16_C: Vps16, C-ter 97.8 0.035 7.6E-07 52.7 26.1 65 13-91 1-65 (319)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00053 1.1E-08 55.0 12.1 100 252-351 5-110 (119)
151 PF09976 TPR_21: Tetratricopep 97.8 0.0021 4.6E-08 53.7 16.1 113 126-239 24-143 (145)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00041 9E-09 55.6 10.9 96 286-381 3-106 (119)
153 PF13414 TPR_11: TPR repeat; P 97.7 0.00013 2.7E-09 52.2 6.0 64 316-379 2-66 (69)
154 KOG0550 Molecular chaperone (D 97.7 0.0016 3.4E-08 61.5 14.4 155 222-380 177-350 (486)
155 PF12895 Apc3: Anaphase-promot 97.7 4.5E-05 9.9E-10 57.0 3.7 77 299-376 3-83 (84)
156 PRK10153 DNA-binding transcrip 97.6 0.0029 6.3E-08 64.4 17.3 139 211-351 334-487 (517)
157 KOG1538 Uncharacterized conser 97.6 0.0064 1.4E-07 60.6 18.6 268 10-344 554-844 (1081)
158 PF05843 Suf: Suppressor of fo 97.6 0.0024 5.2E-08 59.8 15.3 134 215-351 2-141 (280)
159 KOG0553 TPR repeat-containing 97.6 0.00051 1.1E-08 62.2 10.1 99 259-360 91-192 (304)
160 PLN03088 SGT1, suppressor of 97.6 0.00089 1.9E-08 65.1 12.7 99 256-356 9-109 (356)
161 KOG3060 Uncharacterized conser 97.6 0.0087 1.9E-07 53.0 17.0 161 217-381 55-221 (289)
162 cd00189 TPR Tetratricopeptide 97.6 0.0012 2.5E-08 49.9 10.4 59 217-276 3-61 (100)
163 PRK02603 photosystem I assembl 97.5 0.0029 6.2E-08 54.7 13.5 130 213-366 34-166 (172)
164 PF13432 TPR_16: Tetratricopep 97.5 0.00024 5.2E-09 50.1 5.6 56 324-379 4-59 (65)
165 PF04840 Vps16_C: Vps16, C-ter 97.5 0.088 1.9E-06 50.0 24.4 113 249-378 177-289 (319)
166 PLN03088 SGT1, suppressor of 97.5 0.0019 4.1E-08 62.8 13.4 101 220-324 8-110 (356)
167 PF13432 TPR_16: Tetratricopep 97.5 0.00047 1E-08 48.5 6.7 61 291-351 3-65 (65)
168 PRK02603 photosystem I assembl 97.5 0.0014 3.1E-08 56.5 11.1 80 287-366 37-121 (172)
169 PF08579 RPM2: Mitochondrial r 97.5 0.0024 5.2E-08 49.1 10.4 82 114-195 26-116 (120)
170 KOG2053 Mitochondrial inherita 97.5 0.089 1.9E-06 54.9 24.7 122 94-218 21-149 (932)
171 KOG0553 TPR repeat-containing 97.4 0.0004 8.6E-09 62.9 7.0 88 293-380 89-178 (304)
172 CHL00033 ycf3 photosystem I as 97.4 0.0015 3.3E-08 56.2 10.4 93 285-377 35-139 (168)
173 PF08579 RPM2: Mitochondrial r 97.4 0.0027 5.8E-08 48.8 9.7 79 16-94 29-116 (120)
174 PF14938 SNAP: Soluble NSF att 97.3 0.031 6.7E-07 52.6 18.7 125 188-312 119-264 (282)
175 COG3898 Uncharacterized membra 97.3 0.16 3.5E-06 48.1 24.2 296 14-322 84-400 (531)
176 COG4235 Cytochrome c biogenesi 97.3 0.0034 7.5E-08 57.2 11.6 102 282-383 153-259 (287)
177 PF12895 Apc3: Anaphase-promot 97.3 0.0011 2.4E-08 49.5 6.9 80 227-310 2-83 (84)
178 PF14938 SNAP: Soluble NSF att 97.3 0.021 4.6E-07 53.7 17.0 114 221-349 101-228 (282)
179 KOG2796 Uncharacterized conser 97.3 0.023 4.9E-07 50.6 15.4 167 85-253 139-323 (366)
180 PF10037 MRP-S27: Mitochondria 97.2 0.0036 7.9E-08 61.2 11.8 118 79-196 63-186 (429)
181 PF05843 Suf: Suppressor of fo 97.2 0.0047 1E-07 57.9 12.1 128 13-142 2-136 (280)
182 PF13414 TPR_11: TPR repeat; P 97.2 0.0013 2.7E-08 46.9 6.5 65 284-348 2-69 (69)
183 PF14559 TPR_19: Tetratricopep 97.2 0.0004 8.6E-09 49.4 3.8 51 329-379 3-53 (68)
184 PRK15331 chaperone protein Sic 97.2 0.0027 5.8E-08 52.8 8.9 88 292-379 44-133 (165)
185 PF13371 TPR_9: Tetratricopept 97.2 0.001 2.2E-08 48.0 5.9 56 325-380 3-58 (73)
186 PRK15363 pathogenicity island 97.2 0.0091 2E-07 49.5 11.9 95 112-208 34-128 (157)
187 PRK10866 outer membrane biogen 97.2 0.047 1E-06 49.9 17.7 56 254-309 180-236 (243)
188 PF12688 TPR_5: Tetratrico pep 97.2 0.017 3.6E-07 46.1 12.7 106 119-224 7-116 (120)
189 PF14559 TPR_19: Tetratricopep 97.1 0.00086 1.9E-08 47.6 4.7 58 261-320 3-61 (68)
190 KOG1130 Predicted G-alpha GTPa 97.1 0.0036 7.9E-08 59.0 9.6 128 251-378 197-342 (639)
191 PF13281 DUF4071: Domain of un 97.1 0.077 1.7E-06 51.0 18.7 161 188-351 146-339 (374)
192 CHL00033 ycf3 photosystem I as 97.1 0.013 2.7E-07 50.4 12.4 80 114-194 36-117 (168)
193 COG4700 Uncharacterized protei 97.0 0.083 1.8E-06 44.7 16.0 133 245-379 85-221 (251)
194 PF12688 TPR_5: Tetratrico pep 97.0 0.029 6.2E-07 44.7 12.8 106 220-326 7-115 (120)
195 PF10037 MRP-S27: Mitochondria 97.0 0.013 2.8E-07 57.4 12.9 128 34-161 50-186 (429)
196 PRK10153 DNA-binding transcrip 97.0 0.057 1.2E-06 55.1 18.1 69 248-319 419-488 (517)
197 PRK10866 outer membrane biogen 96.9 0.31 6.8E-06 44.5 21.9 199 113-344 32-239 (243)
198 PF06239 ECSIT: Evolutionarily 96.9 0.0086 1.9E-07 52.0 9.5 89 110-198 44-153 (228)
199 PF06239 ECSIT: Evolutionarily 96.8 0.012 2.7E-07 51.1 10.1 97 203-300 34-153 (228)
200 KOG2796 Uncharacterized conser 96.8 0.098 2.1E-06 46.8 15.4 136 216-351 179-320 (366)
201 PRK10803 tol-pal system protei 96.8 0.012 2.5E-07 54.3 10.0 92 288-379 146-245 (263)
202 PF13431 TPR_17: Tetratricopep 96.7 0.00083 1.8E-08 40.0 1.6 32 340-371 2-33 (34)
203 PF03704 BTAD: Bacterial trans 96.7 0.02 4.4E-07 47.8 10.5 69 318-386 63-136 (146)
204 COG4700 Uncharacterized protei 96.7 0.32 6.9E-06 41.3 16.6 121 181-306 87-214 (251)
205 PF13428 TPR_14: Tetratricopep 96.7 0.0032 7E-08 40.2 4.1 42 318-359 2-43 (44)
206 KOG2041 WD40 repeat protein [G 96.6 0.51 1.1E-05 48.1 20.7 203 44-275 689-904 (1189)
207 PF13371 TPR_9: Tetratricopept 96.6 0.0074 1.6E-07 43.4 6.2 61 293-353 3-65 (73)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0086 1.9E-07 58.1 8.2 96 284-382 74-176 (453)
209 PRK10803 tol-pal system protei 96.6 0.045 9.7E-07 50.5 12.4 100 252-351 146-251 (263)
210 PF12921 ATP13: Mitochondrial 96.5 0.035 7.5E-07 44.7 10.1 52 244-295 47-98 (126)
211 COG3898 Uncharacterized membra 96.5 0.78 1.7E-05 43.7 26.8 303 28-345 69-391 (531)
212 KOG2280 Vacuolar assembly/sort 96.5 1.3 2.7E-05 45.9 26.5 118 244-377 679-796 (829)
213 KOG1130 Predicted G-alpha GTPa 96.4 0.016 3.5E-07 54.8 8.6 257 20-277 25-343 (639)
214 PF13525 YfiO: Outer membrane 96.4 0.65 1.4E-05 41.2 19.2 60 118-177 10-71 (203)
215 KOG0543 FKBP-type peptidyl-pro 96.4 0.03 6.6E-07 53.2 10.1 64 317-380 257-320 (397)
216 KOG2280 Vacuolar assembly/sort 96.3 1.6 3.4E-05 45.2 22.8 105 190-310 691-795 (829)
217 KOG0550 Molecular chaperone (D 96.2 0.39 8.5E-06 45.9 16.4 85 260-348 260-352 (486)
218 PF13525 YfiO: Outer membrane 96.1 0.6 1.3E-05 41.4 16.8 57 18-76 11-71 (203)
219 KOG1538 Uncharacterized conser 96.0 0.33 7.2E-06 49.0 15.5 201 13-234 599-824 (1081)
220 PF13424 TPR_12: Tetratricopep 96.0 0.012 2.6E-07 43.0 4.6 26 319-344 48-73 (78)
221 PF13424 TPR_12: Tetratricopep 95.8 0.015 3.2E-07 42.5 4.4 63 317-379 5-74 (78)
222 COG4235 Cytochrome c biogenesi 95.8 0.5 1.1E-05 43.5 14.9 110 246-358 153-267 (287)
223 KOG4555 TPR repeat-containing 95.8 0.087 1.9E-06 41.7 8.3 90 293-382 51-146 (175)
224 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.099 2.1E-06 51.0 10.2 64 246-312 72-139 (453)
225 COG0457 NrfG FOG: TPR repeat [ 95.5 1.6 3.5E-05 38.6 27.4 194 184-379 60-264 (291)
226 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.7 5.9E-05 40.9 25.7 132 215-350 398-535 (660)
227 smart00299 CLH Clathrin heavy 95.4 0.95 2.1E-05 37.3 14.2 44 152-196 11-54 (140)
228 KOG0543 FKBP-type peptidyl-pro 95.3 0.29 6.2E-06 46.9 11.8 95 286-380 258-355 (397)
229 PF09205 DUF1955: Domain of un 95.3 0.99 2.1E-05 36.1 12.7 139 226-383 14-152 (161)
230 KOG2041 WD40 repeat protein [G 95.3 4.2 9.1E-05 41.9 25.0 119 9-137 689-820 (1189)
231 PF12921 ATP13: Mitochondrial 95.3 0.29 6.2E-06 39.4 10.2 52 143-194 47-99 (126)
232 PF03704 BTAD: Bacterial trans 95.1 0.28 6.1E-06 40.8 10.4 70 217-287 65-138 (146)
233 PF04053 Coatomer_WDAD: Coatom 95.1 1.2 2.7E-05 44.4 16.4 157 21-209 270-428 (443)
234 PF13281 DUF4071: Domain of un 95.1 2.7 5.9E-05 40.6 17.8 72 87-158 146-227 (374)
235 KOG1920 IkappaB kinase complex 95.1 3.8 8.3E-05 44.8 20.3 25 117-141 794-820 (1265)
236 COG0457 NrfG FOG: TPR repeat [ 95.1 2.2 4.9E-05 37.7 23.8 198 150-349 61-268 (291)
237 COG1729 Uncharacterized protei 95.1 0.15 3.3E-06 46.2 8.8 91 287-380 144-244 (262)
238 KOG3941 Intermediate in Toll s 95.1 0.18 3.8E-06 45.7 9.0 89 9-97 64-173 (406)
239 KOG3941 Intermediate in Toll s 94.9 0.28 6.1E-06 44.4 9.9 99 202-301 53-174 (406)
240 PF10300 DUF3808: Protein of u 94.7 2 4.3E-05 43.6 16.8 160 217-379 191-375 (468)
241 PF13512 TPR_18: Tetratricopep 94.7 0.81 1.8E-05 37.4 11.3 57 296-352 21-82 (142)
242 KOG1585 Protein required for f 94.6 3.1 6.8E-05 37.2 16.2 53 320-373 193-249 (308)
243 PF00515 TPR_1: Tetratricopept 94.5 0.088 1.9E-06 31.1 4.2 32 318-349 2-33 (34)
244 PRK11906 transcriptional regul 94.4 0.87 1.9E-05 44.8 12.6 115 265-379 274-400 (458)
245 PF13512 TPR_18: Tetratricopep 94.4 1.7 3.7E-05 35.6 12.4 113 221-351 17-133 (142)
246 PF04053 Coatomer_WDAD: Coatom 94.4 0.87 1.9E-05 45.5 13.1 131 224-380 271-402 (443)
247 KOG1258 mRNA processing protei 94.3 7 0.00015 39.7 30.9 345 11-365 44-489 (577)
248 smart00299 CLH Clathrin heavy 94.2 2.7 5.8E-05 34.6 15.2 41 54-95 14-54 (140)
249 PRK11906 transcriptional regul 94.2 5.2 0.00011 39.5 17.5 156 215-374 252-430 (458)
250 PF07719 TPR_2: Tetratricopept 94.2 0.16 3.4E-06 29.8 4.8 33 318-350 2-34 (34)
251 PRK15331 chaperone protein Sic 94.2 0.66 1.4E-05 38.9 9.8 86 122-209 46-131 (165)
252 COG3118 Thioredoxin domain-con 94.0 5.1 0.00011 37.0 15.9 141 223-365 143-286 (304)
253 PF04184 ST7: ST7 protein; In 93.9 4.5 9.6E-05 40.2 16.2 99 253-351 263-380 (539)
254 COG5107 RNA14 Pre-mRNA 3'-end 93.8 2.1 4.5E-05 41.7 13.5 127 48-176 398-530 (660)
255 KOG1941 Acetylcholine receptor 93.7 0.81 1.8E-05 43.1 10.5 224 123-346 16-275 (518)
256 PF07079 DUF1347: Protein of u 93.7 7.7 0.00017 38.1 29.8 351 14-377 79-521 (549)
257 COG1747 Uncharacterized N-term 93.6 8.6 0.00019 38.3 19.7 156 115-277 68-233 (711)
258 KOG2610 Uncharacterized conser 93.2 2.3 5E-05 39.8 12.4 153 195-351 115-283 (491)
259 PF02259 FAT: FAT domain; Int 93.2 8.7 0.00019 37.2 19.1 150 211-363 143-304 (352)
260 KOG4234 TPR repeat-containing 93.1 0.55 1.2E-05 40.4 7.7 89 293-381 103-198 (271)
261 PRK11619 lytic murein transgly 93.1 14 0.0003 39.2 30.5 79 83-163 100-178 (644)
262 KOG1941 Acetylcholine receptor 93.0 5 0.00011 38.0 14.4 193 84-276 45-273 (518)
263 KOG1585 Protein required for f 93.0 6.5 0.00014 35.2 15.3 200 50-273 34-251 (308)
264 PF04184 ST7: ST7 protein; In 93.0 2.1 4.5E-05 42.4 12.4 195 226-432 180-381 (539)
265 KOG4555 TPR repeat-containing 92.5 1.1 2.5E-05 35.6 8.2 89 259-349 53-147 (175)
266 PF08631 SPO22: Meiosis protei 92.4 9.5 0.0002 35.7 22.5 17 327-343 256-272 (278)
267 COG4105 ComL DNA uptake lipopr 92.4 8.2 0.00018 35.0 16.9 57 323-379 173-232 (254)
268 KOG2610 Uncharacterized conser 92.4 1.3 2.8E-05 41.4 9.7 159 226-387 115-283 (491)
269 PRK09687 putative lyase; Provi 92.3 9.7 0.00021 35.6 26.1 18 80-97 35-52 (280)
270 KOG1464 COP9 signalosome, subu 92.1 5.5 0.00012 36.1 13.0 239 95-339 40-325 (440)
271 PF10300 DUF3808: Protein of u 92.1 15 0.00033 37.3 23.8 158 16-176 192-375 (468)
272 COG3118 Thioredoxin domain-con 92.0 10 0.00022 35.1 17.7 117 157-277 143-264 (304)
273 COG4649 Uncharacterized protei 92.0 3.6 7.8E-05 34.7 10.9 118 93-210 69-194 (221)
274 PF09205 DUF1955: Domain of un 91.8 5.7 0.00012 31.9 12.4 63 217-281 89-151 (161)
275 PF07079 DUF1347: Protein of u 91.8 14 0.0003 36.4 24.0 278 59-351 18-332 (549)
276 KOG2114 Vacuolar assembly/sort 91.7 16 0.00034 38.8 17.4 174 86-276 338-517 (933)
277 PF13428 TPR_14: Tetratricopep 91.5 0.42 9E-06 30.2 4.2 26 287-312 3-28 (44)
278 COG1729 Uncharacterized protei 91.5 4 8.7E-05 37.2 11.7 95 217-312 145-242 (262)
279 PF10602 RPN7: 26S proteasome 91.4 5.9 0.00013 34.1 12.5 26 185-210 38-63 (177)
280 PF13181 TPR_8: Tetratricopept 91.3 0.42 9.1E-06 28.0 3.8 31 319-349 3-33 (34)
281 COG3947 Response regulator con 91.2 10 0.00022 35.0 13.7 97 283-379 225-341 (361)
282 PF04097 Nic96: Nup93/Nic96; 91.0 23 0.00051 37.4 19.4 68 14-83 114-188 (613)
283 COG3629 DnrI DNA-binding trans 90.9 1.6 3.5E-05 40.3 8.8 55 86-140 157-214 (280)
284 PF13170 DUF4003: Protein of u 90.9 9.2 0.0002 36.1 14.1 61 231-292 160-224 (297)
285 KOG1920 IkappaB kinase complex 90.9 30 0.00065 38.4 19.7 112 190-312 915-1026(1265)
286 COG3629 DnrI DNA-binding trans 90.8 1.1 2.5E-05 41.3 7.7 62 318-379 154-215 (280)
287 COG4105 ComL DNA uptake lipopr 90.8 13 0.00027 33.8 20.2 169 181-351 33-238 (254)
288 KOG2114 Vacuolar assembly/sort 90.7 12 0.00025 39.7 15.3 178 150-343 336-516 (933)
289 KOG0276 Vesicle coat complex C 90.1 5.8 0.00013 40.2 12.3 150 195-377 598-747 (794)
290 PF13176 TPR_7: Tetratricopept 89.9 0.65 1.4E-05 27.8 3.7 25 320-344 2-26 (36)
291 PF13176 TPR_7: Tetratricopept 89.8 0.79 1.7E-05 27.4 4.1 25 115-139 1-25 (36)
292 PF13170 DUF4003: Protein of u 89.4 6.6 0.00014 37.0 11.8 127 63-191 78-225 (297)
293 PF13431 TPR_17: Tetratricopep 89.4 0.72 1.6E-05 27.2 3.6 31 71-102 3-33 (34)
294 PRK09687 putative lyase; Provi 88.3 22 0.00049 33.2 27.3 228 104-349 28-266 (280)
295 KOG1586 Protein required for f 88.3 18 0.0004 32.3 12.8 24 328-351 165-188 (288)
296 PF09613 HrpB1_HrpK: Bacterial 88.2 2 4.4E-05 35.9 6.7 65 297-361 22-88 (160)
297 PF02259 FAT: FAT domain; Int 88.2 26 0.00056 33.9 16.6 66 315-380 144-213 (352)
298 PF10602 RPN7: 26S proteasome 87.7 8.3 0.00018 33.2 10.5 56 84-139 38-99 (177)
299 TIGR02561 HrpB1_HrpK type III 87.6 2.4 5.3E-05 34.8 6.6 51 330-380 23-73 (153)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 87.6 5 0.00011 30.2 7.6 63 229-293 22-84 (103)
301 KOG0890 Protein kinase of the 87.5 75 0.0016 38.4 24.6 64 317-382 1670-1733(2382)
302 KOG4648 Uncharacterized conser 87.3 1 2.2E-05 42.0 4.9 108 257-371 105-215 (536)
303 PF02284 COX5A: Cytochrome c o 87.1 4.8 0.0001 30.6 7.3 62 231-294 27-88 (108)
304 PF00515 TPR_1: Tetratricopept 86.8 1.7 3.6E-05 25.3 4.1 27 216-242 3-29 (34)
305 PF07035 Mic1: Colon cancer-as 85.8 21 0.00045 30.3 12.2 133 32-176 14-148 (167)
306 PF13374 TPR_10: Tetratricopep 85.7 2 4.3E-05 26.3 4.3 27 319-345 4-30 (42)
307 KOG1258 mRNA processing protei 85.5 46 0.001 34.1 17.9 179 81-261 296-487 (577)
308 PF14853 Fis1_TPR_C: Fis1 C-te 85.1 3.3 7.2E-05 27.4 5.1 30 322-351 6-35 (53)
309 KOG2066 Vacuolar assembly/sort 85.0 56 0.0012 34.6 24.1 89 231-331 611-704 (846)
310 KOG4648 Uncharacterized conser 84.9 2.7 5.8E-05 39.4 6.2 85 221-316 104-197 (536)
311 PF09613 HrpB1_HrpK: Bacterial 84.7 23 0.00049 29.8 12.5 21 91-111 53-73 (160)
312 KOG1586 Protein required for f 84.4 30 0.00065 31.0 13.0 91 263-353 128-231 (288)
313 PF00637 Clathrin: Region in C 84.3 0.7 1.5E-05 38.2 2.2 84 53-139 13-96 (143)
314 COG4785 NlpI Lipoprotein NlpI, 84.0 30 0.00065 30.6 13.8 160 215-381 100-267 (297)
315 PF11207 DUF2989: Protein of u 83.8 11 0.00024 32.9 9.2 72 232-304 124-197 (203)
316 PRK13800 putative oxidoreducta 83.7 79 0.0017 35.3 25.2 254 103-378 625-879 (897)
317 PF11207 DUF2989: Protein of u 83.7 12 0.00025 32.8 9.2 74 129-203 122-198 (203)
318 PF08631 SPO22: Meiosis protei 83.6 39 0.00084 31.6 24.4 61 216-278 86-150 (278)
319 TIGR02508 type_III_yscG type I 83.4 18 0.00038 27.6 9.6 86 164-253 21-106 (115)
320 TIGR02508 type_III_yscG type I 83.0 18 0.0004 27.5 9.5 87 63-153 21-107 (115)
321 PF13174 TPR_6: Tetratricopept 82.8 2.9 6.2E-05 23.9 3.9 26 324-349 7-32 (33)
322 PF07719 TPR_2: Tetratricopept 82.4 3.4 7.5E-05 23.8 4.1 27 216-242 3-29 (34)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 82.2 8.4 0.00018 29.0 6.7 60 30-90 25-84 (103)
324 KOG4570 Uncharacterized conser 81.9 13 0.00028 34.7 9.2 98 177-278 58-164 (418)
325 TIGR02561 HrpB1_HrpK type III 81.6 29 0.00062 28.7 10.7 66 59-125 22-88 (153)
326 KOG0276 Vesicle coat complex C 81.3 29 0.00062 35.6 12.0 102 91-209 646-747 (794)
327 PF00637 Clathrin: Region in C 81.2 0.63 1.4E-05 38.5 0.7 83 154-239 13-95 (143)
328 PF13374 TPR_10: Tetratricopep 81.1 4.2 9E-05 24.8 4.4 28 215-242 3-30 (42)
329 PRK15180 Vi polysaccharide bio 80.6 21 0.00045 35.4 10.6 136 261-400 301-438 (831)
330 PF13929 mRNA_stabil: mRNA sta 80.5 22 0.00047 33.0 10.2 105 230-334 144-255 (292)
331 PF07035 Mic1: Colon cancer-as 80.4 35 0.00076 29.0 13.8 132 133-276 14-147 (167)
332 PF06552 TOM20_plant: Plant sp 80.3 12 0.00026 32.0 7.9 43 333-382 96-138 (186)
333 KOG4570 Uncharacterized conser 80.2 11 0.00025 35.0 8.3 101 77-178 59-165 (418)
334 smart00028 TPR Tetratricopepti 79.2 4.6 0.0001 22.1 4.0 29 320-348 4-32 (34)
335 COG3947 Response regulator con 78.6 57 0.0012 30.3 13.2 57 186-242 282-341 (361)
336 PF02284 COX5A: Cytochrome c o 78.3 11 0.00024 28.8 6.3 60 30-90 28-87 (108)
337 COG2976 Uncharacterized protei 78.2 45 0.00098 29.0 14.3 90 255-349 95-191 (207)
338 PF14853 Fis1_TPR_C: Fis1 C-te 76.6 12 0.00026 24.7 5.6 50 354-429 4-53 (53)
339 COG4785 NlpI Lipoprotein NlpI, 76.6 55 0.0012 29.1 15.6 158 114-278 100-266 (297)
340 PRK13342 recombination factor 76.6 86 0.0019 31.3 14.8 48 115-162 229-279 (413)
341 PF07721 TPR_4: Tetratricopept 76.3 5.7 0.00012 21.6 3.4 20 188-207 6-25 (26)
342 PRK15180 Vi polysaccharide bio 75.3 22 0.00047 35.3 9.0 122 225-350 300-424 (831)
343 KOG1550 Extracellular protein 74.9 1.1E+02 0.0024 31.9 22.0 272 98-379 228-537 (552)
344 PF04097 Nic96: Nup93/Nic96; 74.7 99 0.0022 32.8 14.8 56 87-142 116-181 (613)
345 COG4649 Uncharacterized protei 74.7 53 0.0012 28.0 14.2 53 124-176 69-122 (221)
346 PRK10941 hypothetical protein; 73.3 16 0.00035 33.9 7.6 61 320-380 184-244 (269)
347 PF13174 TPR_6: Tetratricopept 73.1 3.9 8.5E-05 23.3 2.4 28 353-380 2-29 (33)
348 KOG1308 Hsp70-interacting prot 72.9 2.6 5.7E-05 39.6 2.3 89 297-385 126-216 (377)
349 KOG0545 Aryl-hydrocarbon recep 72.7 50 0.0011 29.9 9.9 55 325-379 238-292 (329)
350 PHA02875 ankyrin repeat protei 72.5 1.1E+02 0.0023 30.5 16.4 207 22-249 9-230 (413)
351 KOG4234 TPR repeat-containing 71.9 25 0.00055 30.6 7.7 57 121-178 103-164 (271)
352 PF13181 TPR_8: Tetratricopept 71.5 11 0.00024 21.6 4.2 27 115-141 3-29 (34)
353 KOG0376 Serine-threonine phosp 71.2 8.7 0.00019 38.0 5.5 84 295-378 14-99 (476)
354 PF09477 Type_III_YscG: Bacter 71.1 46 0.001 25.7 9.6 87 61-151 20-106 (116)
355 KOG4642 Chaperone-dependent E3 70.9 10 0.00023 33.9 5.4 66 313-378 39-105 (284)
356 PF09477 Type_III_YscG: Bacter 70.6 48 0.001 25.7 9.0 79 163-244 21-99 (116)
357 KOG1550 Extracellular protein 70.1 1.5E+02 0.0031 31.1 19.5 16 333-348 525-540 (552)
358 COG1747 Uncharacterized N-term 69.0 1.4E+02 0.003 30.4 22.5 169 182-357 65-245 (711)
359 PF07163 Pex26: Pex26 protein; 68.9 59 0.0013 30.0 9.8 87 221-310 90-183 (309)
360 KOG3364 Membrane protein invol 68.5 31 0.00068 28.0 7.0 49 331-379 49-99 (149)
361 cd08819 CARD_MDA5_2 Caspase ac 65.2 48 0.001 24.5 6.9 65 168-234 22-86 (88)
362 KOG4507 Uncharacterized conser 65.1 18 0.00038 36.9 6.2 96 262-360 620-719 (886)
363 PF10366 Vps39_1: Vacuolar sor 65.0 59 0.0013 25.3 8.1 27 216-242 41-67 (108)
364 PRK13800 putative oxidoreducta 64.7 2.4E+02 0.0052 31.6 25.6 267 31-324 622-891 (897)
365 PF10579 Rapsyn_N: Rapsyn N-te 64.4 22 0.00048 25.7 5.0 47 261-307 18-65 (80)
366 PF09670 Cas_Cas02710: CRISPR- 64.2 1.5E+02 0.0032 29.2 12.6 54 224-278 141-198 (379)
367 COG4455 ImpE Protein of avirul 64.2 25 0.00054 31.2 6.2 64 288-351 4-69 (273)
368 KOG4077 Cytochrome c oxidase, 63.8 56 0.0012 26.2 7.5 60 232-293 67-126 (149)
369 PF09986 DUF2225: Uncharacteri 63.5 36 0.00078 30.4 7.5 58 323-380 124-194 (214)
370 KOG4279 Serine/threonine prote 63.5 1.2E+02 0.0026 32.3 11.7 49 293-351 352-400 (1226)
371 PF06552 TOM20_plant: Plant sp 63.5 30 0.00065 29.6 6.5 34 333-366 51-84 (186)
372 TIGR03504 FimV_Cterm FimV C-te 63.1 19 0.00041 22.7 4.1 24 220-243 5-28 (44)
373 PF10366 Vps39_1: Vacuolar sor 62.6 58 0.0013 25.4 7.6 27 115-141 41-67 (108)
374 PF11846 DUF3366: Domain of un 62.5 35 0.00077 29.8 7.3 34 315-348 142-175 (193)
375 TIGR03504 FimV_Cterm FimV C-te 62.4 20 0.00043 22.7 4.0 24 119-142 5-28 (44)
376 PF13762 MNE1: Mitochondrial s 61.8 91 0.002 25.8 9.6 77 85-161 42-128 (145)
377 COG4455 ImpE Protein of avirul 61.5 1.2E+02 0.0026 27.1 12.1 123 217-351 4-139 (273)
378 KOG1464 COP9 signalosome, subu 61.3 1.4E+02 0.0029 27.6 13.7 187 125-311 39-258 (440)
379 PF14561 TPR_20: Tetratricopep 61.2 19 0.0004 27.0 4.5 43 338-380 9-51 (90)
380 KOG2066 Vacuolar assembly/sort 59.6 2.5E+02 0.0054 30.1 25.0 31 184-214 506-536 (846)
381 smart00386 HAT HAT (Half-A-TPR 58.0 16 0.00035 20.4 3.1 28 331-358 1-28 (33)
382 PF10345 Cohesin_load: Cohesin 57.2 2.6E+02 0.0057 29.6 25.5 188 45-242 28-253 (608)
383 PF11768 DUF3312: Protein of u 56.9 1.5E+02 0.0032 30.5 11.0 24 187-210 412-435 (545)
384 PRK10941 hypothetical protein; 56.8 81 0.0018 29.3 8.8 65 289-353 185-251 (269)
385 PF13762 MNE1: Mitochondrial s 56.5 1.1E+02 0.0025 25.2 11.1 51 213-263 78-129 (145)
386 COG5159 RPN6 26S proteasome re 55.3 1.8E+02 0.0039 27.1 11.8 134 120-253 10-168 (421)
387 PHA02875 ankyrin repeat protei 55.3 1.8E+02 0.0038 28.9 11.9 188 69-269 17-219 (413)
388 PF11663 Toxin_YhaV: Toxin wit 54.8 13 0.00029 29.9 2.8 32 226-259 107-138 (140)
389 PF07163 Pex26: Pex26 protein; 54.3 1.7E+02 0.0036 27.3 9.9 86 119-206 89-181 (309)
390 PF11846 DUF3366: Domain of un 53.9 55 0.0012 28.5 7.1 55 258-312 117-171 (193)
391 COG2909 MalT ATP-dependent tra 53.8 3.3E+02 0.0072 29.8 25.3 215 159-376 426-684 (894)
392 cd08819 CARD_MDA5_2 Caspase ac 53.5 91 0.002 23.2 6.7 38 94-132 48-85 (88)
393 KOG0686 COP9 signalosome, subu 52.2 2.4E+02 0.0053 27.7 13.7 59 184-242 151-215 (466)
394 KOG0551 Hsp90 co-chaperone CNS 52.1 80 0.0017 30.0 7.7 89 288-376 84-178 (390)
395 PRK12798 chemotaxis protein; R 52.0 2.5E+02 0.0054 27.8 22.9 179 196-377 125-321 (421)
396 KOG0292 Vesicle coat complex C 51.6 31 0.00067 37.0 5.6 96 227-346 606-701 (1202)
397 COG2976 Uncharacterized protei 51.5 1.7E+02 0.0036 25.7 15.2 88 157-244 98-189 (207)
398 PF09670 Cas_Cas02710: CRISPR- 50.8 2.6E+02 0.0056 27.6 12.0 54 22-76 141-198 (379)
399 PF11848 DUF3368: Domain of un 50.5 55 0.0012 21.0 4.8 33 23-55 13-45 (48)
400 PF07575 Nucleopor_Nup85: Nup8 50.3 3.3E+02 0.007 28.6 18.5 69 234-305 390-458 (566)
401 PF11663 Toxin_YhaV: Toxin wit 50.3 18 0.0004 29.2 3.0 33 124-158 106-138 (140)
402 KOG2300 Uncharacterized conser 50.2 2.9E+02 0.0063 28.0 18.4 145 98-242 298-473 (629)
403 PRK13342 recombination factor 50.1 2.7E+02 0.006 27.7 15.1 45 217-261 230-277 (413)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 50.1 1.2E+02 0.0027 24.3 7.9 42 335-376 81-124 (126)
405 PF13929 mRNA_stabil: mRNA sta 50.0 2.2E+02 0.0048 26.6 15.4 62 145-206 199-261 (292)
406 PF12968 DUF3856: Domain of Un 49.8 1.3E+02 0.0028 23.9 9.2 22 285-306 55-76 (144)
407 PF10579 Rapsyn_N: Rapsyn N-te 49.3 54 0.0012 23.8 4.9 47 226-272 18-66 (80)
408 KOG2422 Uncharacterized conser 49.1 3.2E+02 0.007 28.3 11.8 54 325-378 350-405 (665)
409 PRK10564 maltose regulon perip 48.9 35 0.00075 31.9 5.0 39 115-153 259-297 (303)
410 KOG2396 HAT (Half-A-TPR) repea 47.6 3.2E+02 0.007 27.8 29.8 75 11-87 104-179 (568)
411 PF11838 ERAP1_C: ERAP1-like C 47.5 2.5E+02 0.0055 26.6 17.3 82 265-346 146-230 (324)
412 KOG0292 Vesicle coat complex C 47.4 3.8E+02 0.0083 29.4 12.4 131 191-345 651-781 (1202)
413 TIGR02270 conserved hypothetic 46.8 3.1E+02 0.0067 27.4 24.9 192 101-312 88-279 (410)
414 PF12862 Apc5: Anaphase-promot 46.6 64 0.0014 24.2 5.5 52 328-379 9-69 (94)
415 KOG1498 26S proteasome regulat 46.1 3E+02 0.0065 27.0 17.7 186 179-393 48-254 (439)
416 KOG3807 Predicted membrane pro 45.7 2.5E+02 0.0055 26.7 9.9 54 220-275 281-337 (556)
417 PRK10564 maltose regulon perip 45.2 45 0.00098 31.2 5.1 42 215-256 258-299 (303)
418 KOG0403 Neoplastic transformat 45.1 3.3E+02 0.0072 27.2 16.8 55 289-343 513-569 (645)
419 PF14863 Alkyl_sulf_dimr: Alky 44.5 1E+02 0.0022 25.4 6.6 62 302-366 58-119 (141)
420 PF11525 CopK: Copper resistan 43.9 8.7 0.00019 26.6 0.3 20 492-511 8-27 (73)
421 KOG3364 Membrane protein invol 43.7 1.8E+02 0.0039 23.8 8.0 69 283-351 30-105 (149)
422 KOG4077 Cytochrome c oxidase, 43.6 1.2E+02 0.0026 24.4 6.4 44 66-109 68-111 (149)
423 cd00280 TRFH Telomeric Repeat 43.3 1.8E+02 0.0039 25.2 7.9 22 256-277 118-139 (200)
424 KOG2297 Predicted translation 43.2 2.9E+02 0.0063 26.1 16.6 76 75-162 159-237 (412)
425 PF14689 SPOB_a: Sensor_kinase 42.8 59 0.0013 22.3 4.3 24 253-276 27-50 (62)
426 cd08326 CARD_CASP9 Caspase act 42.4 76 0.0017 23.4 5.1 39 94-132 42-80 (84)
427 COG4976 Predicted methyltransf 42.2 41 0.00088 30.1 4.1 55 296-350 6-62 (287)
428 PF11848 DUF3368: Domain of un 41.8 94 0.002 20.0 5.2 30 125-154 14-43 (48)
429 KOG3824 Huntingtin interacting 41.4 53 0.0011 30.7 4.9 55 297-351 128-184 (472)
430 PRK11619 lytic murein transgly 41.3 4.8E+02 0.01 28.0 32.5 94 292-385 414-510 (644)
431 TIGR02270 conserved hypothetic 41.1 3.8E+02 0.0082 26.8 24.8 180 146-342 98-277 (410)
432 COG4003 Uncharacterized protei 40.6 69 0.0015 23.2 4.3 21 57-77 41-61 (98)
433 PF14689 SPOB_a: Sensor_kinase 39.4 51 0.0011 22.6 3.5 28 215-242 24-51 (62)
434 PHA03100 ankyrin repeat protei 39.4 4.2E+02 0.0092 26.8 12.3 14 369-382 366-379 (480)
435 KOG0686 COP9 signalosome, subu 39.0 4E+02 0.0086 26.4 15.4 26 285-312 306-331 (466)
436 COG5108 RPO41 Mitochondrial DN 38.8 1.6E+02 0.0035 30.9 8.1 48 219-266 33-82 (1117)
437 COG5108 RPO41 Mitochondrial DN 38.6 1.7E+02 0.0037 30.8 8.2 72 52-123 33-113 (1117)
438 PRK14962 DNA polymerase III su 38.3 4.5E+02 0.0098 26.8 13.3 39 67-107 182-221 (472)
439 KOG4507 Uncharacterized conser 37.7 1.4E+02 0.0029 30.9 7.4 133 246-381 568-706 (886)
440 PF04190 DUF410: Protein of un 37.0 3.4E+02 0.0074 25.0 19.5 83 181-278 88-170 (260)
441 COG4976 Predicted methyltransf 36.4 73 0.0016 28.6 4.8 55 327-381 5-59 (287)
442 PF07720 TPR_3: Tetratricopept 36.0 98 0.0021 18.5 4.6 18 322-339 6-23 (36)
443 KOG2659 LisH motif-containing 35.9 3.3E+02 0.0071 24.5 8.9 53 256-310 71-128 (228)
444 KOG4521 Nuclear pore complex, 35.8 7.2E+02 0.016 28.4 13.8 18 192-209 929-946 (1480)
445 COG0790 FOG: TPR repeat, SEL1 35.8 3.7E+02 0.0079 25.0 19.1 146 60-211 54-219 (292)
446 COG5191 Uncharacterized conser 35.1 66 0.0014 30.2 4.5 76 281-356 103-181 (435)
447 cd00280 TRFH Telomeric Repeat 34.6 2.5E+02 0.0054 24.4 7.4 34 292-325 118-151 (200)
448 PF08311 Mad3_BUB1_I: Mad3/BUB 33.8 2.5E+02 0.0054 22.5 8.1 42 166-207 81-123 (126)
449 COG0735 Fur Fe2+/Zn2+ uptake r 33.1 2E+02 0.0043 23.8 6.8 64 236-301 8-71 (145)
450 PF12968 DUF3856: Domain of Un 33.1 2.1E+02 0.0046 22.8 6.2 62 316-377 54-126 (144)
451 cd08332 CARD_CASP2 Caspase act 33.1 1.6E+02 0.0035 21.9 5.7 36 94-129 46-81 (90)
452 PF06957 COPI_C: Coatomer (COP 33.0 2.2E+02 0.0048 28.4 8.0 34 317-350 300-333 (422)
453 PF04090 RNA_pol_I_TF: RNA pol 32.3 3.5E+02 0.0076 23.8 9.1 34 215-249 42-75 (199)
454 cd08326 CARD_CASP9 Caspase act 32.2 2E+02 0.0043 21.2 5.9 38 195-232 42-79 (84)
455 PF04910 Tcf25: Transcriptiona 32.2 4.9E+02 0.011 25.4 13.9 64 316-379 99-167 (360)
456 PF11817 Foie-gras_1: Foie gra 31.8 1.8E+02 0.004 26.5 7.1 9 328-336 229-237 (247)
457 COG2909 MalT ATP-dependent tra 31.7 7.3E+02 0.016 27.3 24.9 306 30-342 299-684 (894)
458 PF11817 Foie-gras_1: Foie gra 31.4 1.8E+02 0.0039 26.6 6.9 18 356-373 223-240 (247)
459 PRK11639 zinc uptake transcrip 31.3 1.7E+02 0.0038 24.9 6.3 61 240-302 17-77 (169)
460 PF04910 Tcf25: Transcriptiona 31.2 5.1E+02 0.011 25.3 18.0 51 257-310 111-164 (360)
461 PF11768 DUF3312: Protein of u 31.2 4.5E+02 0.0098 27.1 9.9 56 86-141 412-472 (545)
462 PF00244 14-3-3: 14-3-3 protei 31.1 4.1E+02 0.0088 24.1 10.8 161 220-381 7-199 (236)
463 PF12926 MOZART2: Mitotic-spin 31.0 2.2E+02 0.0048 21.1 6.8 41 68-108 29-69 (88)
464 PF14561 TPR_20: Tetratricopep 30.8 2.3E+02 0.0049 21.1 9.3 62 316-377 21-85 (90)
465 PF07575 Nucleopor_Nup85: Nup8 30.6 3.7E+02 0.008 28.2 9.9 92 115-210 374-465 (566)
466 PF04762 IKI3: IKI3 family; I 30.6 6.5E+02 0.014 28.4 12.1 49 323-376 878-926 (928)
467 PF04090 RNA_pol_I_TF: RNA pol 30.6 2.9E+02 0.0062 24.3 7.5 60 319-378 43-103 (199)
468 PF02847 MA3: MA3 domain; Int 30.6 1E+02 0.0022 23.8 4.6 20 119-138 8-27 (113)
469 KOG3824 Huntingtin interacting 30.4 79 0.0017 29.6 4.2 53 260-315 127-181 (472)
470 PF10255 Paf67: RNA polymerase 30.3 3.1E+02 0.0068 27.2 8.6 57 185-241 124-191 (404)
471 PRK14700 recombination factor 29.8 4.9E+02 0.011 24.6 10.2 124 43-179 63-197 (300)
472 KOG4567 GTPase-activating prot 29.5 5E+02 0.011 24.7 10.5 44 234-277 263-306 (370)
473 KOG2908 26S proteasome regulat 29.4 5.2E+02 0.011 24.9 10.2 54 224-277 85-143 (380)
474 COG2178 Predicted RNA-binding 29.4 3.9E+02 0.0085 23.4 8.3 50 193-242 39-97 (204)
475 COG5187 RPN7 26S proteasome re 29.3 4.9E+02 0.011 24.5 11.3 95 113-209 115-218 (412)
476 PF15161 Neuropep_like: Neurop 29.3 27 0.00059 22.9 0.8 15 473-488 13-27 (65)
477 PF10475 DUF2450: Protein of u 29.0 2.7E+02 0.0059 26.2 7.8 52 88-141 104-155 (291)
478 KOG2034 Vacuolar sorting prote 29.0 8.2E+02 0.018 27.0 23.2 146 84-239 391-555 (911)
479 KOG0991 Replication factor C, 28.7 4.5E+02 0.0098 23.9 9.6 37 211-248 236-272 (333)
480 PF04190 DUF410: Protein of un 28.2 4.8E+02 0.01 24.1 15.3 89 21-109 19-117 (260)
481 PF00244 14-3-3: 14-3-3 protei 27.8 4.6E+02 0.01 23.8 10.8 58 118-175 6-64 (236)
482 PF09454 Vps23_core: Vps23 cor 27.8 85 0.0018 21.8 3.1 49 9-58 5-53 (65)
483 KOG3636 Uncharacterized conser 27.4 6.2E+02 0.013 25.3 9.6 83 142-225 177-271 (669)
484 cd07153 Fur_like Ferric uptake 27.3 1.4E+02 0.003 23.3 4.8 46 18-63 6-51 (116)
485 COG2912 Uncharacterized conser 27.1 1.8E+02 0.0039 26.9 5.9 57 323-379 187-243 (269)
486 PF12862 Apc5: Anaphase-promot 27.0 2.7E+02 0.0058 20.8 7.9 19 258-276 50-68 (94)
487 smart00804 TAP_C C-terminal do 26.6 57 0.0012 22.5 2.1 24 25-48 38-62 (63)
488 PF04034 DUF367: Domain of unk 26.6 3.4E+02 0.0074 21.8 7.7 58 285-342 66-124 (127)
489 PF12069 DUF3549: Protein of u 26.5 5.9E+02 0.013 24.6 11.8 88 87-177 171-259 (340)
490 PF04762 IKI3: IKI3 family; I 25.7 1E+03 0.022 26.9 14.0 28 185-212 814-843 (928)
491 PF02847 MA3: MA3 domain; Int 25.4 1E+02 0.0022 23.9 3.7 24 16-39 6-29 (113)
492 PF12796 Ank_2: Ankyrin repeat 25.0 2.3E+02 0.005 20.4 5.5 13 94-106 6-18 (89)
493 cd07153 Fur_like Ferric uptake 24.4 1.7E+02 0.0036 22.8 4.8 43 222-264 8-50 (116)
494 PF08225 Antimicrobial19: Pseu 23.7 46 0.001 16.9 0.8 11 478-488 11-21 (23)
495 PF11838 ERAP1_C: ERAP1-like C 23.7 6.2E+02 0.013 23.8 17.9 79 164-242 146-229 (324)
496 KOG2063 Vacuolar assembly/sort 23.5 1.1E+03 0.023 26.4 17.3 209 116-361 507-742 (877)
497 PLN03192 Voltage-dependent pot 23.1 9.5E+02 0.021 26.6 11.9 52 254-311 624-678 (823)
498 KOG4642 Chaperone-dependent E3 22.9 5.9E+02 0.013 23.3 9.1 13 414-426 189-201 (284)
499 COG0790 FOG: TPR repeat, SEL1 22.9 6.1E+02 0.013 23.5 19.3 77 303-382 173-268 (292)
500 PF14044 NETI: NETI protein 22.8 83 0.0018 21.0 2.1 16 417-432 10-25 (57)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.5e-112 Score=895.08 Aligned_cols=513 Identities=38% Similarity=0.690 Sum_probs=507.1
Q ss_pred CccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
+|++ |+ +||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.+.++|..+.+.|+.+
T Consensus 180 lf~~-m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 180 LFDE-MP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred HHhc-CC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 5899 99 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
.|++++|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 320 (516)
.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+..|+..+|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 400 (516)
++|+.+|..+|+++.|..+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.|++|||++++.+|.|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC-----CCCchhhhhhhhhhhccHHHHHHHhhhcCCCCCeEEEEeeeee
Q 043362 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR-----SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475 (516)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~-----~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~ 475 (516)
.+||.+||+..++|..+.++..+|++.||.|| +++++++++. .+++||||||++|||+++|+|.||||+||||+
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~-~~~~hsekla~a~~l~~~~~~~~i~i~knlr~ 656 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKV-SGRYHSEKLAIAFGLINTSEWTPLQITQSHRI 656 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHH-HHHhccHHHHHHhhCccCCCCCeEEEecCCEE
Confidence 99999999999999999999999999999999 7899888888 89999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhcCceEEEecCCccccccccccCCCCCC
Q 043362 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516 (516)
Q Consensus 476 ~~~~~~a~~~~s~~~~~~~~~~~~~~~h~~~~g~~~~~~~w 516 (516)
|+|||+|+||||++.+|+|||||.+|||||++|+|||+|||
T Consensus 657 c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 657 CKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-106 Score=871.87 Aligned_cols=509 Identities=42% Similarity=0.760 Sum_probs=499.6
Q ss_pred CccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
+|++ |+ .||+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|
T Consensus 345 vf~~-m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 345 VFSR-ME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred HHhh-CC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 5888 99 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||++++.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
.|+++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 320 (516)
.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+.+||..+|
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~ 660 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999977899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 400 (516)
++|+.+|..+|+.+.|+.+.+++.+++|+++..|..|+++|+..|+|++|.++++.|+++|++++|++|||++++.+|.|
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f 740 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC----CCCchhhhhhhhhhhccHHHHHHHhhhcCCCCCeEEEEeeeeec
Q 043362 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR----SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476 (516)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~----~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~ 476 (516)
.+||.+||+..+||..++++..+|++.||.|| .++++++++. .+++||||||++|||+++|+|.||||+||||+|
T Consensus 741 ~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~-~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c 819 (857)
T PLN03077 741 LTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDD-IFCGHSERLAIAFGLINTVPGMPIWVTKNLYMC 819 (857)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHH-HHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeC
Confidence 99999999999999999999999999999999 3456777887 899999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhcCceEEEecCCccccccccccCCCC
Q 043362 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKD 514 (516)
Q Consensus 477 ~~~~~a~~~~s~~~~~~~~~~~~~~~h~~~~g~~~~~~ 514 (516)
+|||+++||||++.+|+|||||.+|||||++|+|||+|
T Consensus 820 ~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 820 ENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-67 Score=564.10 Aligned_cols=489 Identities=26% Similarity=0.375 Sum_probs=431.5
Q ss_pred CccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
+|++ |+ +||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..+.++|..+++.|+.|
T Consensus 143 ~f~~-m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 220 (857)
T PLN03077 143 VFGK-MP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220 (857)
T ss_pred HHhc-CC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCc
Confidence 5899 99 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
|..++|+|+.+|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||++++.+|++
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 320 (516)
.+.|+.||..||+.++.+|++.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~ 458 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISW 458 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeH
Confidence 99999999999999999999999999999999999976 999999999999999999999999999999997 6899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEE--------
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE-------- 392 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~-------- 392 (516)
++++.+|.+.|+.++|..+|++|.+..++|..+|..++.+|++.|..+.+.+++..|.+.|+.++.......
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 999999999999999999999998655556678888888888888888888888887777765543221100
Q ss_pred ------------------ECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC--------------CCCchhhh
Q 043362 393 ------------------LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR--------------SDQKNSEE 440 (516)
Q Consensus 393 ------------------~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~--------------~~~~~~~~ 440 (516)
.+.. +.+...|+...++ .+++++|++.|+.|| +.++++
T Consensus 539 ~~~~A~~~f~~~~~d~~s~n~l----I~~~~~~G~~~~A----~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea-- 608 (857)
T PLN03077 539 RMNYAWNQFNSHEKDVVSWNIL----LTGYVAHGKGSMA----VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG-- 608 (857)
T ss_pred CHHHHHHHHHhcCCChhhHHHH----HHHHHHcCCHHHH----HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH--
Confidence 0111 1222345566655 578999999999999 122222
Q ss_pred hhhhhhhccHHHHHHHhhhcCCCCCeEEEEeeeeecccchhHHHHHhhhcCc------eEEEecCCccccccccc
Q 043362 441 HLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDR------QFIVRDATRFHHFKSGF 509 (516)
Q Consensus 441 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~s~~~~~------~~~~~~~~~~h~~~~g~ 509 (516)
....+.|...+|+.|...++. ++++.+.++|+..+|.++|.+|+.+ ..++..|+.+.+.+.|+
T Consensus 609 -----~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 609 -----LEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred -----HHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 223445555677766655554 7889999999999999999999744 23445565555555443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.6e-62 Score=513.42 Aligned_cols=476 Identities=23% Similarity=0.341 Sum_probs=417.6
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 87 (516)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
|+++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 247 (516)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043362 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327 (516)
Q Consensus 248 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 327 (516)
|..||++++.+|++.|++++|.+++..|.+. |+.||..+|++|+++|+++|++++|.++|++|. +||..+|++||.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 9999999999999999999999999999986 999999999999999999999999999999996 68999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcC-CCCccchHHHhhHHHHcCChhHHHHHHHHHHh-CCCCCCCceeEEEECCEEEEEEeCCC
Q 043362 328 KIHKNVELAELAFGKVIKLE-PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE-RRLKKDPGYSYVELKGRVHLFMVGDR 405 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~i~~~~~~~~f~~~~~ 405 (516)
+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|..++|.++|+.|.+ .|+.|+..... ..+..+ .
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~----~li~~l----~ 473 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA----CMIELL----G 473 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH----hHHHHH----H
Confidence 99999999999999998765 34567999999999999999999999999986 58876543211 111111 2
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCCCCC--------------CCCchhhhhhhhhhhccHHHHHHHhhhcCCCCCeEEEEe
Q 043362 406 NHHQTVEIYRMLDKLENLVQEHDGTKR--------------SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471 (516)
Q Consensus 406 ~~~~~~~~~~~l~~l~~~m~~~g~~p~--------------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~ 471 (516)
..+..+++ .+.+++.++.|+ ++++.+. ...++ .+++.+...+..+.+++
T Consensus 474 r~G~~~eA-------~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~-------~~~~~---l~~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 474 REGLLDEA-------YAMIRRAPFKPTVNMWAALLTACRIHKNLELGR-------LAAEK---LYGMGPEKLNNYVVLLN 536 (697)
T ss_pred hcCCHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH-------HHHHH---HhCCCCCCCcchHHHHH
Confidence 23344444 334556788888 1222111 11111 13443433344556667
Q ss_pred eeeecccchhHHHHHhhhcCceE-------EEecCCccccccccccC
Q 043362 472 NLRICGDCHLFIKLVSKIVDRQF-------IVRDATRFHHFKSGFCS 511 (516)
Q Consensus 472 ~l~~~~~~~~a~~~~s~~~~~~~-------~~~~~~~~h~~~~g~~~ 511 (516)
-+..+|+..+|.+++..|..+.+ .+.-.+..|.|..|-.+
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 78999999999999999998865 23445667888766544
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-58 Score=492.89 Aligned_cols=481 Identities=19% Similarity=0.247 Sum_probs=402.4
Q ss_pred CccccCCCCCCcccH-----HHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHH
Q 043362 1 VFDESIKSTHLTVCY-----NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~-----n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 75 (516)
+|++ |+ .++++.| +.++.+|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|+.|.+
T Consensus 392 Lfd~-M~-~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 392 LLED-ME-KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHH-HH-hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4677 77 6665554 4556678888999999999988873 9999999999999999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC----CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 043362 76 FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP----EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151 (516)
Q Consensus 76 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 151 (516)
.|+.||..+|++||.+|+++|++++|.++|++|. .+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 466 ~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTY 545 (1060)
T PLN03218 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999998 478899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH--cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC----CCHhHHHHHHHHHH
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQA--NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR----KTVVSWTAIIGGYG 225 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~ 225 (516)
+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+++|+++|++++|.++|+.|.+ ++..+||++|.+|+
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999987 68999999999999999999999999999999974 56799999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|+.||.+|+++|++++|.
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999976 99999999999999999999999999
Q ss_pred HHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 306 ELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE-PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 306 ~~~~~m~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
++|++|. ..||..+|++||.+|.+.|++++|.++|++|.+.+ .++..+|..++.+|.+.|++++|.++++.|.+.|
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999996 67999999999999999999999999999998765 3456799999999999999999999999999999
Q ss_pred CCCCCceeEEEE-------------CCEEEEEEeCCCCCcchHH-HHHHHHHHHHHHHhCCCCCCC----CCchh-hhhh
Q 043362 382 LKKDPGYSYVEL-------------KGRVHLFMVGDRNHHQTVE-IYRMLDKLENLVQEHDGTKRS----DQKNS-EEHL 442 (516)
Q Consensus 382 ~~~~~~~s~i~~-------------~~~~~~f~~~~~~~~~~~~-~~~~l~~l~~~m~~~g~~p~~----~~~~~-~~~~ 442 (516)
+.|+.......+ ...+..|-.+ ++.... -......++++|.+.|+.||. .+-.. .+.
T Consensus 785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~- 860 (1060)
T PLN03218 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP- 860 (1060)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-
Confidence 988764221111 1111122111 111111 112345899999999999991 00000 000
Q ss_pred hhhhhccHHHHHHHhhhcCCCCCeE--EEEeeeeecccchhHHHHHhhhcCceEE
Q 043362 443 NDTEVHSEKLAIAFGIINTSPGTEI--VVMKNLRICGDCHLFIKLVSKIVDRQFI 495 (516)
Q Consensus 443 ~~~~~~~~~la~~~~~~~~~~~~~~--~~~~~l~~~~~~~~a~~~~s~~~~~~~~ 495 (516)
.-......|-..++..+.+++... .+++.+ |..-+.|..++..|..+.|+
T Consensus 861 -~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 861 -HDATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred -ccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHHHHHHcCCC
Confidence 001123344455666666665432 244433 11125799999998888553
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-57 Score=481.00 Aligned_cols=384 Identities=19% Similarity=0.258 Sum_probs=361.7
Q ss_pred CccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
+|+. |+ .||+.+||.||.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 428 lf~~-M~-~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 428 FAKL-IR-NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred HHHH-cC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 3667 99 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCC----CCchHHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCCHHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPE----KGLITWNAMISGYAQNGLATHVLELYREMKS--LGVCPDAVTFVGV 154 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~l 154 (516)
|..+|++||.+|++.|++++|.++|+.|.+ ||.++||+||.+|++.|++++|.++|.+|.. .|+.||..||+++
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 999999999999999999999999999964 6789999999999999999999999999986 6799999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCH
Q 043362 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHG 230 (516)
Q Consensus 155 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~ 230 (516)
+.+|++.|++++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999997 46999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
++|.++|++|.+.|++||..+|++++.+|++.|++++|.++|+.|.+. |+.||..+|+.||.+|++.|++++|.++|++
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875 9999999999999999999999999999999
Q ss_pred cC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCccchHHHhhHHH----HcC-----------------
Q 043362 311 ML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE-PMNTGYYVLLSNIYS----EAR----------------- 365 (516)
Q Consensus 311 m~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g----------------- 365 (516)
|. ..||..+|++++.+|.+.|+++.|.+++++|.+.+ .++..+|..++.+|. +++
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~ 824 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIE 824 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccc
Confidence 97 67999999999999999999999999999999865 345668888877643 222
Q ss_pred --ChhHHHHHHHHHHhCCCCCCCc
Q 043362 366 --NLDGIMRVRMMMRERRLKKDPG 387 (516)
Q Consensus 366 --~~~~a~~~~~~m~~~~~~~~~~ 387 (516)
..++|..+|++|.+.|+.|+..
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHH
Confidence 2367999999999999988753
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=3.3e-29 Score=197.26 Aligned_cols=101 Identities=54% Similarity=0.891 Sum_probs=85.7
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC-----CCCchh--------hhhhhhhhhccHHHH
Q 043362 387 GYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR-----SDQKNS--------EEHLNDTEVHSEKLA 453 (516)
Q Consensus 387 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~-----~~~~~~--------~~~~~~~~~~~~~la 453 (516)
++||+++ |.|.+||.+||+. ++..++...||.|+ ++++++ +++. .+..||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~-~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEE-SLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchh-hhhccHHHHH
Confidence 5789876 9999999999998 34556666777776 344333 3344 7789999999
Q ss_pred HHHhhhcCCCCCeEEEEeee-eecccchhHHHHHhhhcCceEEEecCCcccccc
Q 043362 454 IAFGIINTSPGTEIVVMKNL-RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFK 506 (516)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~~a~~~~s~~~~~~~~~~~~~~~h~~~ 506 (516)
++||++++ +|+||+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999998 899999 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.2e-23 Score=229.56 Aligned_cols=364 Identities=12% Similarity=0.090 Sum_probs=287.2
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
.+...+..+...+...|++++|...|+++.+.+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 574 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALA 574 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHH
Confidence 356677788888888899999999998888764 4566778888888888888889988888887775 56667788888
Q ss_pred HHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 166 (516)
..|.+.|++++|..+++.+.+. +..+|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 8888889998888888887542 35678888888888888888888888887653 3456677778888888888888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
|..+++.+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...+..+...+...|++++|.+.|+++...
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 888888888764 44577888888888888888888888888763 35667777888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHH
Q 043362 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWG 321 (516)
Q Consensus 244 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~ 321 (516)
.|+..++..+..++.+.|++++|.+.+..+.+. .+.+...+..+...|...|++++|.+.|+++. .. ++..+++
T Consensus 733 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 808 (899)
T TIGR02917 733 --APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLN 808 (899)
T ss_pred --CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 355566777788888888888888888888763 34467778888888888888888888888775 23 3577788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
.+...+...|+ ++|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88888888888 7788888888888888877777888888888888888888888877554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=5.2e-23 Score=226.60 Aligned_cols=362 Identities=14% Similarity=0.059 Sum_probs=321.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
++..+|+.+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+++.. +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 467889999999999999999999999998764 4456677788888999999999999999999876 66788999999
Q ss_pred HHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 166 (516)
..|.+.|+.++|...|+++.+. +...+..++..|.+.|++++|+.+++++... .+.+..+|..+..++...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988543 3467888999999999999999999999875 35677899999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
|...++.+.+.. +.+...+..+..+|.+.|++++|.++|+++.+ .+..+|..++..+...|++++|..+++.+.+.
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999998864 45677889999999999999999999998753 36789999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHH
Q 043362 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWG 321 (516)
Q Consensus 244 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~ 321 (516)
+ +++...+..+...+...|++++|...|..+... .|+..++..++..+.+.|++++|.+.++++. .. .+..++.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4 556778888899999999999999999999854 5666888889999999999999999998876 33 4688888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+...|...|+.++|...|+++.+..|+++.++..++.++...|+ .+|..+++++.+.
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999 8899999998765
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=5.9e-21 Score=182.21 Aligned_cols=358 Identities=14% Similarity=0.182 Sum_probs=303.4
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChh-HHHHHHH
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMT 90 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~ 90 (516)
..+|..+...+-..|++++|+.+++.|.+.. +-....|..+..++...|+.+.|.+.+...++.. |+.. +.+.+-.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 4578889999999999999999999999873 3346789999999999999999999999988874 5443 4455566
Q ss_pred HHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHH
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 166 (516)
..-..|++++|...+.+..+.+ .++|+.|...+..+|+...|+..|++.... .|+ ...|..+...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 6667899999999988766544 378999999999999999999999998874 565 4688899999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
|...+.+..... +....++..|...|-..|.++-|...|++..+. -...|+.|..++-..|+..+|.+.|.+....
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998887753 334667778888899999999999999987643 3578999999999999999999999998874
Q ss_pred CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHH
Q 043362 244 GIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAV 319 (516)
Q Consensus 244 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~ 319 (516)
.|+ ....+.|...+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|...+++.. ++|+ ...
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 444 46788899999999999999999998874 4554 4567889999999999999999998876 7787 788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.+...|...|+.+.|.+.+.+++.++|.-..++..|+.+|..+|+..+|..-++...+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999988889999999999999999999998887654
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.5e-20 Score=182.63 Aligned_cols=298 Identities=13% Similarity=0.084 Sum_probs=151.5
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC-------chHHHHHHHHHHHcCChh
Q 043362 58 VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-------LITWNAMISGYAQNGLAT 130 (516)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~ 130 (516)
...|++++|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+.... ...|..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455666666666665553 3344455556666666666666666655544321 124555555666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 131 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+|+.+|+++.+. -+++..++..++..+...|++++|.+.++.+.+.+..+....
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 666666665543 123444555555555566666666666555555432111100
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHH
Q 043362 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 290 (516)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..
T Consensus 179 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~ 254 (389)
T PRK11788 179 --IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPK 254 (389)
T ss_pred --HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHH
Confidence 00122334444445555555555555554431 112334444455555555555555555555432 11111234455
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH---cCC
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE---ARN 366 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~ 366 (516)
++.+|.+.|++++|...++++. ..|+...+..+...+...|++++|..+++++.+..|++. .+..++..+.. .|+
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCcc
Confidence 5555555666666665555544 335444445555556666666666666666666555543 33333333332 345
Q ss_pred hhHHHHHHHHHHhCCCCCCCc
Q 043362 367 LDGIMRVRMMMRERRLKKDPG 387 (516)
Q Consensus 367 ~~~a~~~~~~m~~~~~~~~~~ 387 (516)
.+++..+++.|.+++++++|.
T Consensus 334 ~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chhHHHHHHHHHHHHHhCCCC
Confidence 666666666666666555554
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=7.2e-19 Score=184.11 Aligned_cols=359 Identities=12% Similarity=0.016 Sum_probs=286.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 94 (516)
+......|.+.|++++|+..|++.+.. .|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 446677888999999999999998875 6888889999999999999999999999999875 5567788999999999
Q ss_pred cCCHHHHHHHHcccCC---------------------------------CCchHHHHHHHH-------------------
Q 043362 95 CGSVDYGRKLFDQVPE---------------------------------KGLITWNAMISG------------------- 122 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~---------------------------------~~~~~~~~li~~------------------- 122 (516)
.|++++|...|..... .+..++..+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999865533210 001111111000
Q ss_pred -------H----------HHcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 043362 123 -------Y----------AQNGLATHVLELYREMKSLG-VCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183 (516)
Q Consensus 123 -------~----------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 183 (516)
+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...+++.++.. +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0 11257889999999998764 234 34567777888889999999999999999864 3346
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
..|..+...|...|++++|...|++.. ..+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 688889999999999999999998765 3367889999999999999999999999998853 334667778888999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HH-------HHHHHHHHHHhcC
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GA-------VWGALLGACKIHK 331 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~-------~~~~ll~~~~~~g 331 (516)
+.|++++|...|+...+. .+.++..++.+...|...|++++|.+.|++.. ..|+ .. .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999999863 23357889999999999999999999999865 3342 11 1222223344569
Q ss_pred CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++++|..+++++++++|++...+..++.+|...|++++|.+.++...+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999888999999999999999999999988653
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.8e-20 Score=183.05 Aligned_cols=258 Identities=12% Similarity=0.089 Sum_probs=208.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHh
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN---PFLNNALINMYAR 195 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~ 195 (516)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888887753 23445677777788888888888888888777532221 2567888999999
Q ss_pred CCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChHHH
Q 043362 196 CGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG----TAFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 268 (516)
.|++++|.++|+++.+ .+..+++.++..+.+.|++++|.+.++++.+.+..++. ..+..+...+...|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999998865 46778999999999999999999999999886543322 2355677788999999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD--GAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
..+|+++.+. .+.+...+..+...|.+.|++++|.++++++. ..|+ ..+++.++.+|...|+.++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999864 12346678888999999999999999999987 3454 45688899999999999999999999999
Q ss_pred cCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 346 LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 346 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..|+.. .+..++.++.+.|++++|.++++.+.+.
T Consensus 278 ~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 278 EYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred hCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999764 5688999999999999999999988765
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2e-19 Score=171.95 Aligned_cols=355 Identities=14% Similarity=0.138 Sum_probs=304.2
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHH-HHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 88 (516)
..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+-+ ......|++.+|...+.+.++.. +-=..+|+.|
T Consensus 148 ~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnL 224 (966)
T KOG4626|consen 148 KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNL 224 (966)
T ss_pred hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-Cceeeeehhc
Confidence 46889999999999999999999999999875 67665544333 33445799999999999998874 3334579999
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~ 164 (516)
...+-..|++..|...|++....|+ .+|-.|...|...+.+++|+..|.+.... .|+ .+.+..+...|...|.+
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccH
Confidence 9999999999999999999887664 68989999999999999999999988764 565 56788888889999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
+.|+..+++.++.. +.-...|+.|..++-..|+..+|.+.|.+... .-..+.+.|...|...|.+++|..+|....
T Consensus 303 dlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 303 DLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999864 33478999999999999999999999998763 245688889999999999999999999988
Q ss_pred HcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-H
Q 043362 242 KSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPD-G 317 (516)
Q Consensus 242 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~ 317 (516)
+ +.|. ...++.|...|-+.|++++|...++... .+.|+ ...|+.+...|-..|+.+.|.+.+.+.. ..|. .
T Consensus 382 ~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 382 E--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred h--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 7 5565 4678899999999999999999999998 56886 5689999999999999999999999876 6676 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHH
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
...+.|.+.|...|++.+|+..++..++++|+.+.+|-.++.+.--..+|.+-.+.++
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 8899999999999999999999999999999999999999888877777766433333
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=6.5e-18 Score=176.53 Aligned_cols=328 Identities=9% Similarity=-0.047 Sum_probs=260.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
-.++..+.+.|++.+|+.+++..+... +-+...+..++.+....|+++.|.+.++.+++.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 346678888999999999999998774 3334455566667778999999999999999886 66677888899999999
Q ss_pred CCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043362 96 GSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172 (516)
Q Consensus 96 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 172 (516)
|++++|...|++..+. +...|..+...+...|++++|...++++..... .+...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999987653 356888899999999999999999998876532 223333333 34778899999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCC
Q 043362 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEV----AVQLFDEMLKSGI 245 (516)
Q Consensus 173 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~ 245 (516)
.+.+....++......+...+.+.|++++|.+.|++... .+...+..+...|.+.|++++ |+..|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 988765334455556667888999999999999988753 367788889999999999885 899999988752
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHH-HHH
Q 043362 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAV-WGA 322 (516)
Q Consensus 246 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-~~~ 322 (516)
+.+...+..+...+...|++++|...+++.... .| +...+..+...|.+.|++++|.+.++++. ..|+... +..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 334667888899999999999999999998864 44 45667788899999999999999998876 5576444 334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+..++...|+.++|...++++.+..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56678899999999999999999988754
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=6e-17 Score=169.32 Aligned_cols=350 Identities=11% Similarity=0.005 Sum_probs=277.9
Q ss_pred HhCCCchHHHHHHHHhHHCC--CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 043362 23 VLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100 (516)
Q Consensus 23 ~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 100 (516)
.+..+++.---.|....+.- -.-+......++..+.+.|+++.|..+++..+... +.+......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 35556655544554443321 11233446667788889999999999999998886 4445556666677778999999
Q ss_pred HHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 101 GRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 101 A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
|...|+++.+.+ ...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999987543 4688889999999999999999999998752 334667788889999999999999999988776
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043362 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253 (516)
Q Consensus 178 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 253 (516)
... +...+..+. .+...|++++|...++.+.+. +...+..+..++.+.|++++|+..|++..... +.+...+.
T Consensus 174 ~P~-~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCC-CHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 433 333443343 478899999999999987543 33344556778899999999999999999863 34566777
Q ss_pred HHHHHHhccCChHH----HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043362 254 SVLSACSHAGLTDK----GLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGA 326 (516)
Q Consensus 254 ~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~ 326 (516)
.+..++...|++++ |...|+++.+. .| +...+..+...+.+.|++++|...+++.. ..|+ ...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88899999999986 89999999853 44 57788999999999999999999999876 4564 6778888899
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+...|++++|...++++.+..|++...+..++.++...|++++|...++...+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988766777788999999999999999988654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=2.2e-16 Score=176.21 Aligned_cols=348 Identities=10% Similarity=0.024 Sum_probs=280.9
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 043362 20 SGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD 99 (516)
Q Consensus 20 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 99 (516)
..+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 45678999999999999999874 4456677788889999999999999999999875 555667777888875 56789
Q ss_pred HHHHHHcccCCCC------------chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 100 YGRKLFDQVPEKG------------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 100 ~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
+|..+++.++... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999998876432 1245567788899999999999999998853 22456777888899999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----CH---------hHHHHHHHHHHhcCCHHHHH
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK----TV---------VSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~---------~~~~~li~~~~~~g~~~~A~ 234 (516)
...++++.+.. +.+...+..+...+.+.|+.++|...++.++.. +. ..+..+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999998754 335555556666778899999999999998642 11 11234566788999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V 313 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 313 (516)
.+++. .+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++..|...|++++|.+.++... .
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99882 3455667778888999999999999999999864 23367888999999999999999999999876 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------cchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 314 EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT------GYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 314 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.| +...+..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|...++....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45 466777788889999999999999999998776544 2556678999999999999999988753
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=1.2e-16 Score=178.33 Aligned_cols=354 Identities=9% Similarity=0.015 Sum_probs=232.5
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC-ChhHH------------
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL-DFSVG------------ 85 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~------------ 85 (516)
...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++.+++..... ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455677888889999988888763 3466777788888888889999998888888764221 11112
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC---- 158 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---- 158 (516)
..+...+.+.|++++|...|++..+.+ ...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 122445678888888888888876533 4567778888888889999988888887642 22333443333333
Q ss_pred --------------------------------------HhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHH
Q 043362 159 --------------------------------------AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200 (516)
Q Consensus 159 --------------------------------------~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 200 (516)
...|++++|.+.++++++.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 33455555555555555442 223444445555555555555
Q ss_pred HHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCChHHH
Q 043362 201 KARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT---------AFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 201 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a 268 (516)
+|...|+++.+ .+...+..+...+...++.++|+..++++......++.. .+..+...+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 55555554421 133333333333444555555555555432211111111 112334455666777777
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 346 (516)
..+++. .++++..+..+...|.+.|++++|.+.|++.. ..| +...+..+...+...|+.++|+..++++.+.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 766651 13355667778888999999999999998876 445 5788888889999999999999999999888
Q ss_pred CCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 347 EPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 347 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.|+++..+..++.++...|++++|.++++.+....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888888999999999999999999887643
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=5.5e-16 Score=165.53 Aligned_cols=189 Identities=11% Similarity=0.002 Sum_probs=152.1
Q ss_pred HHHhCCCHHHHHHHHhcCCCCC---H-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCC
Q 043362 192 MYARCGNLKKARAIFDGMPRKT---V-VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP---DGTAFVSVLSACSHAGL 264 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~ 264 (516)
++...|++++|.+.|+.+.+.+ + ..-..+..+|...|++++|+..|+++....... .......+..++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4457799999999999987542 1 112225778999999999999999987643111 12445667778899999
Q ss_pred hHHHHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh
Q 043362 265 TDKGLEYFYGMKNKYG----------LQPG---PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKI 329 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~ 329 (516)
+++|.++++.+.+... -.|+ ...+..+...+...|++++|+++++++. ..| +...+..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999986411 1123 2345677888999999999999999976 345 58889999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.|++++|+..++++++++|++...+..++..+...|++++|..+++.+.+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999764
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2.2e-15 Score=157.95 Aligned_cols=334 Identities=12% Similarity=-0.002 Sum_probs=259.7
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCC----------
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL---------- 78 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------- 78 (516)
.|+...|..+..+|.+.|++++|++.+...++.. +.+...+..+..++...|++++|..-+..+...+-
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 5677889999999999999999999999998863 34456788889999999999999765543322110
Q ss_pred -------------------CCChhHHHHH------------------------------HHHH------HHcCCHHHHHH
Q 043362 79 -------------------DLDFSVGNCL------------------------------MTMY------VKCGSVDYGRK 103 (516)
Q Consensus 79 -------------------~~~~~~~~~l------------------------------l~~~------~~~g~~~~A~~ 103 (516)
+++...+..+ +..+ ...+++++|.+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 1110000000 1111 11257889999
Q ss_pred HHcccCCC------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 104 LFDQVPEK------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 104 ~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
.|+...+. ....|+.+...+...|++++|+..|++..+. .|+ ..+|..+...+...|++++|...++.+++
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99887643 2357888889999999999999999999875 454 56788888899999999999999999988
Q ss_pred cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043362 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253 (516)
Q Consensus 177 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 253 (516)
.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .+.+...+.
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~ 471 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYN 471 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHH
Confidence 74 45678899999999999999999999998753 35677888899999999999999999998875 233567888
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP--------EHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGAL 323 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l 323 (516)
.+...+...|++++|...|++.... .|+. ..++.....+...|++++|.+++++.. ..|+ ...+..+
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~l 548 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATM 548 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 8999999999999999999998753 3321 112222333445799999999999864 4564 6678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
...+...|++++|...|+++.++.+..
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999887653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=1.1e-14 Score=155.68 Aligned_cols=337 Identities=12% Similarity=0.028 Sum_probs=244.9
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
+...+..+...+...|++++|..+|++.++.. +.+...+..+...+...|+.++|...++.+++.. +.+.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence 34457778888888888888888888877652 3345556666677778888888888888887774 55555 777788
Q ss_pred HHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHH-----------------------------------
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHV----------------------------------- 132 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A----------------------------------- 132 (516)
++...|+.++|...++++.+.+ ...+..+...+...|..++|
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 8888888888888888775433 23444555555555555544
Q ss_pred -----------HHHHHHHHHC-CCCCCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHHcCCC-CchHHHHHHHHHHH
Q 043362 133 -----------LELYREMKSL-GVCPDAV-TFV----GVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNALINMYA 194 (516)
Q Consensus 133 -----------~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~ 194 (516)
++.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+ .....+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence 4444444432 1122221 111 1133456778999999999999987632 22 22233677899
Q ss_pred hCCCHHHHHHHHhcCCCCC-------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHH
Q 043362 195 RCGNLKKARAIFDGMPRKT-------VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-----------RPDG---TAFV 253 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~t~~ 253 (516)
..|++++|...|+++.+.+ ...+..+..++.+.|++++|..+++++..... .|+. ..+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 9999999999999875432 23456677788999999999999999987521 1332 2445
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHK 331 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g 331 (516)
.+...+...|++++|++.++++... .+.+...+..+...+...|++++|++.+++.. ..|+ ...+..+...+...|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 6777888999999999999999864 34467888999999999999999999999887 5675 667777778889999
Q ss_pred CHHHHHHHHHHHhhcCCCCccc
Q 043362 332 NVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
++++|+.+++++++..|+++.+
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999998743
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=6.7e-14 Score=150.07 Aligned_cols=360 Identities=12% Similarity=0.072 Sum_probs=252.3
Q ss_pred CCCcccHHHH-HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhc-CCCchHHHHHHHHHHHhCCCCChhHHH
Q 043362 9 THLTVCYNAL-ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHCICVKFGLDLDFSVGN 86 (516)
Q Consensus 9 ~~~~~~~n~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~ 86 (516)
.|+....... ...|.+.|++++|+.++.++.+.+ +.+..-...+..++.. .++ +.+..++.. .+..++.++.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 3334433444 889999999999999999999986 3344446666667776 366 767666442 3346888999
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCC-----chH-------------------------------------------HHH
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVPEKG-----LIT-------------------------------------------WNA 118 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~~~~-----~~~-------------------------------------------~~~ 118 (516)
.+++.|.+.|+.++|.+++++++..+ ..+ |..
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999998874210 000 000
Q ss_pred --------------------------------------------------HHHHHHHcCChhHHHHHHHHHHHC-C-CCC
Q 043362 119 --------------------------------------------------MISGYAQNGLATHVLELYREMKSL-G-VCP 146 (516)
Q Consensus 119 --------------------------------------------------li~~~~~~g~~~~A~~~~~~m~~~-g-~~p 146 (516)
+.....++|+.++|.++|+..... + -.+
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 000113456666666666655331 0 011
Q ss_pred ----------------------------------------------------------------CHHHHHHHHHHHHhcC
Q 043362 147 ----------------------------------------------------------------DAVTFVGVLSSCAHLG 162 (516)
Q Consensus 147 ----------------------------------------------------------------~~~t~~~ll~~~~~~g 162 (516)
+...+..+..++.. +
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 11122222222222 4
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
+.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...|++.
T Consensus 491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555666555555432 3433333444455678888888888886653 34455667777888889999999999888
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GA 318 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~ 318 (516)
.... +++...+..+.......|++++|...+.+..+ +.|+...+..+..++.+.|+.++|...+++.. ..|+ ..
T Consensus 569 L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 569 EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 8753 22333333444455567999999999999984 46788889999999999999999999999887 5564 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.++.+..++...|+.++|+..++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888899999999999999999999999999999999999999999999999999987643
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=6.7e-14 Score=147.12 Aligned_cols=359 Identities=12% Similarity=0.029 Sum_probs=249.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChh-hHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSV-TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV 93 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 93 (516)
|...| ...++|++++|++.|++..+. .|+.. ....++..+...|+.++|...++..+.. -+.......++...|.
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 44444 355778888888888888765 45532 2226677777778888888888877711 1222333334456777
Q ss_pred HcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 94 KCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
..|++++|.++|+++.+.+ ...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 7888888888888876543 355667777788888888888888887764 45655554444444445556558888
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---------------------------------------
Q 043362 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--------------------------------------- 211 (516)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------------------------------------- 211 (516)
++++.+.. +.+...+..++....+.|-...|.++...-+.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 88888764 44566666677777777766655555443220
Q ss_pred --------------CCH-hHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 212 --------------KTV-VSW----TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 212 --------------~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
|.. ..| --.+-++...|+..++++.|+.|...|.+....+-..+..+|...+.+++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 000 011 1234466778889999999999998876645567788899999999999999999
Q ss_pred HHhHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C---------------CC-HHHHHHHHHHHHhcC
Q 043362 273 YGMKNKYG----LQPGPEHYTCMVDLLGRAGQLNEALELIESMLV-E---------------PD-GAVWGALLGACKIHK 331 (516)
Q Consensus 273 ~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~---------------p~-~~~~~~ll~~~~~~g 331 (516)
..+....+ ..++......|.-+|...+++++|..+++++.. . || ......++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 98865422 123444467788888899999999999887751 1 22 223344556678889
Q ss_pred CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.+|++.++++....|.|......++.++...|...+|.+.++.....
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999766543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=1.5e-13 Score=144.48 Aligned_cols=361 Identities=12% Similarity=0.021 Sum_probs=270.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC
Q 043362 17 ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG 96 (516)
Q Consensus 17 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 96 (516)
.++..+...|+.++|+..+++.... .+.....+..+...+...|++++|.++++.+++.. +.+..++..++..|...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 8888999999999999999998821 12222233333557788899999999999999986 556788888999999999
Q ss_pred CHHHHHHHHcccCCCCchHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--
Q 043362 97 SVDYGRKLFDQVPEKGLITWNAMISGYAQ--NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-- 172 (516)
Q Consensus 97 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~-- 172 (516)
+.++|++.++++...+......+..+|.. .++..+|++.++++.+.. +-+...+.....+..+.|-...|.++..
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999999987765433334445554 556666999999998863 3345555666666666654444433322
Q ss_pred ----------------------------------------------HHHH-cC-CCCchHH-HHH---HHHHHHhCCCHH
Q 043362 173 ----------------------------------------------QIQA-NG-FGSNPFL-NNA---LINMYARCGNLK 200 (516)
Q Consensus 173 ----------------------------------------------~~~~-~g-~~~~~~~-~~~---li~~y~~~g~~~ 200 (516)
.+.. .+ .++.... ..+ -+-++.+.|++.
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 2222 11 1211111 222 234566789999
Q ss_pred HHHHHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCChHHHHHH
Q 043362 201 KARAIFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-----IRPDGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 201 ~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
++.+.|+.++.. ...+--++..+|...+++++|+.+|+++.... ..++......|.-++...+++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999843 23455678899999999999999999987643 122333457888999999999999999
Q ss_pred HHHhHHhcC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 272 FYGMKNKYG----------LQPG---PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 272 ~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A 336 (516)
++.+.+... -.|+ ...+..++..+...|++.+|++.++++. ..| |...+..+...+...|.+.+|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999986311 0122 2334556788899999999999999987 445 789999999999999999999
Q ss_pred HHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.++.+..++|++..+....+.++...|+|++|.++.+.+...
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887654
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=3.7e-13 Score=144.42 Aligned_cols=346 Identities=14% Similarity=0.038 Sum_probs=262.6
Q ss_pred CCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHHcCC---HHH
Q 043362 26 SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF-G-LDLDFSVGNCLMTMYVKCGS---VDY 100 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~ll~~~~~~g~---~~~ 100 (516)
+...++...++.|.+.. +-+....-.+--...+.|+.++|.++++..... + -..+....+-|++.|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 55566666666666551 224444444444456778899999998887663 1 12345566688888988877 333
Q ss_pred HHHHHccc-------------------------CC---C--CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 043362 101 GRKLFDQV-------------------------PE---K--GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150 (516)
Q Consensus 101 A~~~f~~~-------------------------~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 150 (516)
+..+-..+ .. . +...|..+..++.. ++.++|+..|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 43331111 11 1 34567777777776 8899999988887764 477665
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH---HHHHHhc
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI---IGGYGIH 227 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~ 227 (516)
...+..++...|++++|...++++... +|+...+..+...+.+.|++++|.+.|+...+.++..++.. .......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 555556667899999999999998665 34445566778889999999999999988765443333333 3334455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
|++++|+..|++..+. .|+...+..+..++.+.|++++|...+.+.... .| +...+..+...+...|++++|.+
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999884 577888999999999999999999999999853 45 56788888899999999999999
Q ss_pred HHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 307 LIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 307 ~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
.+++.. ..| +...+..+..++...|++++|+..+++++++.|++..+.....+...+..+++.|.+-++.....++
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999876 456 5888999999999999999999999999999999998999999999999999999988877765544
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.4e-12 Score=117.97 Aligned_cols=331 Identities=13% Similarity=0.177 Sum_probs=244.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
++..||..||.++++-...+.|.+++++......+.+..+||.++.+-+- ..++++..+|+...+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 46689999999999999999999999999988789999999999987543 34588999999999999999999999
Q ss_pred HHHHHcCCHHHHHHH----HcccC----CCCchHHHHHHHHHHHcCChhH-HHHHHHHHHHC----CCC---C-CHHHHH
Q 043362 90 TMYVKCGSVDYGRKL----FDQVP----EKGLITWNAMISGYAQNGLATH-VLELYREMKSL----GVC---P-DAVTFV 152 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~----f~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~---p-~~~t~~ 152 (516)
+..++.|+++.|.+. +.+|+ +|...+|..+|..+.+.++..+ |..++.++... .++ | |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 999999998876654 45554 4556899999999999988855 44555555432 222 3 566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CCCc---hHHHHHHHHHHHhCCCHHHHHHHHhcCCC----CCHhHHHHHH
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQANG----FGSN---PFLNNALINMYARCGNLKKARAIFDGMPR----KTVVSWTAII 221 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li 221 (516)
+.+..|....+.+.|.+++..+.... +.++ ..-|..+..+.+....++.-...|+.|.. |+..+-..++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 99999999999999999998775421 2233 34567788888899999999999998874 4666667778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-Ch-------------HHHHHHH-------HHhHHhcC
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG-LT-------------DKGLEYF-------YGMKNKYG 280 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~-------------~~a~~~~-------~~~~~~~~ 280 (516)
.+..-.|.++-.-+++.++...|...+......++.-+++.. .. +-|..++ .++. .
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~ 517 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---A 517 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---h
Confidence 888888888888888888888775544444444444444333 10 0011111 1122 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESML-------VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 281 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
........++..-.+.|.|+.++|.+++.... ..|......-++......++...|..+++-+...+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34456677888888999999999999887652 23444444456667777888888888888876644
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.8e-15 Score=142.68 Aligned_cols=255 Identities=19% Similarity=0.200 Sum_probs=111.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTF-VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 197 (516)
+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|.+.++++...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 455667778888888877554433223444433 33444556677888888888888776532 55667777776 6888
Q ss_pred CHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 198 NLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 198 ~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
++++|.++++..- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899888887663 3466777888888999999999999999977532 345667788888889999999999999999
Q ss_pred hHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 275 MKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 275 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
..+. .| |......++..+...|+.+++.++++... ...|...|..+..++...|+.++|...+++..+..|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9865 56 47788889999999999999888777664 234567788999999999999999999999999999999
Q ss_pred cchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 352 GYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 352 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.....++.++...|+.++|.+++....
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=5.2e-12 Score=127.06 Aligned_cols=328 Identities=13% Similarity=0.077 Sum_probs=225.2
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccc---CCCCchHHHHHHHHHHHcCChhHHHHH
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV---PEKGLITWNAMISGYAQNGLATHVLEL 135 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 135 (516)
..|+++.|..++.++++.. +.....|-+|...|-..|+.+++...+-.. ...|...|..+..-..+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3377777777777777765 556667777777777777777777665433 333456677777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHH----HHHHHHHHhCCCHHHHHHHHhcCCC
Q 043362 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKARAIFDGMPR 211 (516)
Q Consensus 136 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~y~~~g~~~~A~~~~~~m~~ 211 (516)
|.+.++.. +++...+---...|-+.|+...|...+.++.....+.|..-. -..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777652 344444445556677777777777777777765432222222 2334556666666777777766543
Q ss_pred --C---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHHHH
Q 043362 212 --K---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---------------------------IRPDGTAFVSVLSAC 259 (516)
Q Consensus 212 --~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~ 259 (516)
. +...++.++..|....+++.|......+.... +.++... .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 1 34456777777777777888777776665521 1222222 1122233
Q ss_pred hccCChHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHH
Q 043362 260 SHAGLTDKGLEYFYGMKNKYGLQP--GPEHYTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVE 334 (516)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~ll~~~~~~g~~~ 334 (516)
.+....+....+....... .+.| ++..|.-+.++|...|++.+|..+|..+... .+...|--+...|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4444444444444444443 5333 5778999999999999999999999998732 25779999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeE
Q 043362 335 LAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390 (516)
Q Consensus 335 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 390 (516)
+|.+.+++++...|++..+-..|+.+|.+.|+.++|.+++..|..-+-...++..|
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999887433333344555
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=4e-12 Score=125.60 Aligned_cols=279 Identities=12% Similarity=-0.006 Sum_probs=210.9
Q ss_pred CCCchHHHHHHHHHHHhCCCCChhHHHHH-HHHHHHcCCHHHHHHHHcccCCCCch--HH--HHHHHHHHHcCChhHHHH
Q 043362 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCL-MTMYVKCGSVDYGRKLFDQVPEKGLI--TW--NAMISGYAQNGLATHVLE 134 (516)
Q Consensus 60 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~~A~~~f~~~~~~~~~--~~--~~li~~~~~~g~~~~A~~ 134 (516)
.|+++.|++......+.. +++.++-.+ .....+.|+++.|...|.++.+.+.. .. -.....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887776654432 223333333 34447889999999999887654322 11 133567888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhCCCHHHHHHHHh
Q 043362 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP-------FLNNALINMYARCGNLKKARAIFD 207 (516)
Q Consensus 135 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~ 207 (516)
.++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++. .+|..++....+..+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999988764 335667778888889999999999999999887644322 234455555556667788888888
Q ss_pred cCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 043362 208 GMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284 (516)
Q Consensus 208 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 284 (516)
.+++ .++.....+..++...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...++ .+-|
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~ 327 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDT 327 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCC
Confidence 8863 47788889999999999999999999998874 455422 2334445569999999999999865 2346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
+..+.++...+.+.|++++|.+.|+... ..|+...+..+...+...|+.++|...+++.+.+-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6778899999999999999999999887 67999999999999999999999999999987653
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2.4e-12 Score=119.60 Aligned_cols=345 Identities=14% Similarity=0.122 Sum_probs=225.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC------------Chh
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL------------DFS 83 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~ 83 (516)
|.+--.|.+.|.++.|+..|+...+. .|+..+-..|+-.+...|+.++.++.|..++.....+ +..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 33444567889999999999888776 6777665555555556688888888888888754322 222
Q ss_pred HHHHHH-----HHHHHcCC--HHH----HHHHHcccCCCCc---hHHH----------H--------HHHHHHHcCChhH
Q 043362 84 VGNCLM-----TMYVKCGS--VDY----GRKLFDQVPEKGL---ITWN----------A--------MISGYAQNGLATH 131 (516)
Q Consensus 84 ~~~~ll-----~~~~~~g~--~~~----A~~~f~~~~~~~~---~~~~----------~--------li~~~~~~g~~~~ 131 (516)
..|.-+ .-.-+... -++ |.++..-+..++. .-|. - -..-|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222211 11111111 111 2222222233331 0111 0 1234788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH--HH----------------------------------HHHhcCChHHHHHHHHHHH
Q 043362 132 VLELYREMKSLGVCPDAVTFVGV--LS----------------------------------SCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 132 A~~~~~~m~~~g~~p~~~t~~~l--l~----------------------------------~~~~~g~~~~a~~~~~~~~ 175 (516)
|+++++-+.+..-+.-+..-+.+ +. .....|+++.|.+.+++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 99998877654322111111111 11 1112367777777777777
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 252 (516)
...-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++.+.... ++.|+..+
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 654333333333 2334667788888888876653 345556666777787888888888888776553 55567777
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH-Hhc
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGAC-KIH 330 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~~~ 330 (516)
.-|...|-+.|+-.+|.+.+..--+ -++-+.++..-|..-|....-.++|..+|++.. .+|+..-|..++..| ++.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 8888888888888888887654432 344577888888888888888899999998876 789999999988665 678
Q ss_pred CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
|+++.|..+++.+.+..|.+......|+.++...|.
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999899998888888888888775
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.9e-11 Score=119.19 Aligned_cols=282 Identities=9% Similarity=-0.033 Sum_probs=175.5
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHcccCC----CCchHHHHHHHHHHHcCChhHHH
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMTMYVKCGSVDYGRKLFDQVPE----KGLITWNAMISGYAQNGLATHVL 133 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~ 133 (516)
..|+++.|.+.+....+.. |+.. .+-.....+.+.|+.+.|.+.|.+..+ .++...-.....+.+.|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4588888888887766553 3332 333445667777888888888877532 22223333466777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHH-------HHHHHHHHhCCCHHHHHHHH
Q 043362 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN-------NALINMYARCGNLKKARAIF 206 (516)
Q Consensus 134 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-------~~li~~y~~~g~~~~A~~~~ 206 (516)
+.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+..... ..++..-......+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887763 335556777778888888888888888888887644333221 11121112223334555555
Q ss_pred hcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 207 DGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF---VSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 207 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
+..++ .+...+..+...+...|+.++|.+++++..+. .||.... ....-.....++.+.+.+.++...+...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 55553 36777777888888888888888888887774 3333311 1111122334666777777776665422
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 281 LQPGPEHYTCMVDLLGRAGQLNEALELIES--ML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 281 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
-.|+.....++...+.+.|++++|.+.|+. .. ..|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222214555677777777777777777773 32 457776677777777777777777777777644
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=6.7e-14 Score=132.00 Aligned_cols=256 Identities=16% Similarity=0.105 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHH-HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 17 ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLC-LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 17 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
.+...+.+.|++++|+++++.......+|+...|-. +...+...++.+.|++.++.++..+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 446777788899999998866544432344444443 4445556788888888888888776 3356667777777 678
Q ss_pred CCHHHHHHHHcccCC--CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043362 96 GSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172 (516)
Q Consensus 96 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 172 (516)
+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888776533 345667778888888888888888888876532 34566677777788888888888888888
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 173 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
+.++.. |.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+..|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 888864 3357777888888888888887666665543 3466777788888888888888888888877642 4466
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 250 TAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 250 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
.....+..++...|+.++|.++..++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 677777788888888888887776654
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=7.7e-11 Score=109.15 Aligned_cols=353 Identities=19% Similarity=0.243 Sum_probs=194.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHH--hhcCCCchHH-HHHHHHHHHhCCCCChhHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI--CVDPGYLWLG-MCCHCICVKFGLDLDFSVGNC 87 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 87 (516)
.+++=|.|+.. ...|...++.-+|+.|...|++.....-..++.. |-...+..-+ .+.|-.|.+.| ..+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 35666777754 4568899999999999999987776655555443 2233333222 22333343333 2222222
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
|.|++.+ -+|+..++ ...++.+||.+.++--..+.|.+++++-.+...+.+..+|+.++.+-+- ..+
T Consensus 191 ------K~G~vAd--L~~E~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH--HHHhhcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 2344333 33443333 3356666777777766667777777666666566666677766655432 223
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHh----cCC----CCCHhHHHHHHHHHHhcCCHHH-HHHHHH
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD----GMP----RKTVVSWTAIIGGYGIHGHGEV-AVQLFD 238 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 238 (516)
.++..+|....+.||..++|+++++.++.|+++.|.+.+- +|. +|...+|..+|..+.+.++..+ |..+..
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 5666666666667777777777777777776665544332 332 4566666666666666666533 333333
Q ss_pred HHHH----cCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC---CCCC---HHHHHHHHHHHHhcCCHHHH
Q 043362 239 EMLK----SGIRP----DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG---LQPG---PEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 239 ~m~~----~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A 304 (516)
++.. ...+| |..-|...+..|.+..+.+.|.++..-+....+ +.|+ ..-|..+..+.+....++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 11222 234455666666666666666666655542111 1122 12345555666666666666
Q ss_pred HHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------------------cCCC-----------
Q 043362 305 LELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIK---------------------LEPM----------- 349 (516)
Q Consensus 305 ~~~~~~m~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---------------------~~p~----------- 349 (516)
.+.++.|. .-|+..+..-++.+....+.++---+++..+.. ..|.
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 66666654 224444444444444444433332222222211 0111
Q ss_pred -----------------------CccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 350 -----------------------NTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 350 -----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+......+-.+.+.|+.++|.+++....+.
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 1233455666788999999999999988644
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.53 E-value=4.8e-11 Score=121.07 Aligned_cols=368 Identities=16% Similarity=0.091 Sum_probs=264.1
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCC--CChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVE--INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGN 86 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 86 (516)
..|++.-|.|..-|...|+++.++.+...+...... .-..+|-.+.+++-..|++++|...|....+..-..-+..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 357788888999999999999999999988765311 123457788899999999999999998887764222234456
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNG----LATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 159 (516)
-|..+|.+.|+++.+...|+.+.+.. ..+...|...|+..+ ..+.|..++.+..+. .+.|...|..+...+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHH
Confidence 78899999999999999999986533 467777777777775 456677777766654 2446777877777665
Q ss_pred hcCChHHHHHHHHHHH----HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------CH------hHHHHHHH
Q 043362 160 HLGAHSVGLEVEQQIQ----ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK-------TV------VSWTAIIG 222 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~------~~~~~li~ 222 (516)
... ...+..++..+. ..+-++.+.+.|.+...+...|++++|...|...... |. .+--.+..
T Consensus 426 ~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 543 333366665544 4555678889999999999999999999999876422 22 12223455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
.+-..++.+.|.+.|+..... .|.-+ .|.-++......+...+|..+++.... ....++..++.+...+.+...+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhh
Confidence 566678899999999998874 45533 344444333445778888888888875 4445666666677777777777
Q ss_pred HHHHHHHHhcC----CCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 302 NEALELIESML----VEPDGAVWGALLGACK------------IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 302 ~~A~~~~~~m~----~~p~~~~~~~ll~~~~------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
..|.+-|+.+. ..+|..+.-+|.+.|. ..+..+.|+++|.++++.+|.|..+-+.++-+++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 77777444433 3456666666666553 2245678888888888888888888888888888899
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043362 366 NLDGIMRVRMMMRERRL 382 (516)
Q Consensus 366 ~~~~a~~~~~~m~~~~~ 382 (516)
++.+|..+|..+++...
T Consensus 661 ~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS 677 (1018)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999988887543
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=2.5e-11 Score=120.63 Aligned_cols=292 Identities=12% Similarity=0.005 Sum_probs=211.7
Q ss_pred HHHHHHHHH--hCCCchHHHHHHHHhHHCCCCCChh-hHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 15 YNALISGYV--LNSLVSEAVSLFGKMREQGVEINSV-TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 15 ~n~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
+..+..+.. ..|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+..+.+....+...+.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 444555554 479999999999888765 45543 3344456677889999999999998876423333455556888
Q ss_pred HHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChH
Q 043362 92 YVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC---AHLGAHS 165 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~ 165 (516)
+...|+++.|...++.+.+. +..++..+...|.+.|++++|.+++..+.+.++.+..........+. ...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998754 34678899999999999999999999999987543332212112222 2222333
Q ss_pred HHHHHHHHHHHcC---CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhH---HHHHHHHHHhcCCHHHHHHHH
Q 043362 166 VGLEVEQQIQANG---FGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVS---WTAIIGGYGIHGHGEVAVQLF 237 (516)
Q Consensus 166 ~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~---~~~li~~~~~~g~~~~A~~~~ 237 (516)
.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+ ||... +..........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3334555554432 124788999999999999999999999998864 33321 122222334457888999999
Q ss_pred HHHHHcCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043362 238 DEMLKSGIRPDG---TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311 (516)
Q Consensus 238 ~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 311 (516)
++..+. .|+. ....++...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888774 4444 45568889999999999999999953322 55899999999999999999999999999874
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=8.1e-11 Score=116.33 Aligned_cols=275 Identities=12% Similarity=0.092 Sum_probs=213.5
Q ss_pred cCCHHHHHHHHcccCCCC--c-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKG--L-ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV--GVLSSCAHLGAHSVGLE 169 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~--~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 169 (516)
.|+++.|++.+...++.. . ..|-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998876542 2 34444445558999999999999999874 56654333 33567889999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-----------hHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV-----------VSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999876 55788899999999999999999999988874321 133344444444555666777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-
Q 043362 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD- 316 (516)
Q Consensus 239 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~- 316 (516)
.+.+. .+.+......+..++...|+.++|..++.+..+. .|+.... ++.+....++.+++.+.+++.. ..|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76443 3457778889999999999999999999998853 5555322 2233335599999999998876 4564
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.....++...|...+++++|...|+++.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66788889999999999999999999999999764 678999999999999999999987643
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.3e-12 Score=123.88 Aligned_cols=276 Identities=13% Similarity=0.067 Sum_probs=216.3
Q ss_pred CHHHHHHHHcccCCC--Cc-hHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043362 97 SVDYGRKLFDQVPEK--GL-ITWNAMISGYAQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVE 171 (516)
Q Consensus 97 ~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 171 (516)
+..+|...|..+++. |. .....+..+|...+++++|.++|+.+.+.. ..-+...|++++-.+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 457889999887643 33 445567889999999999999999998742 112567888877654321 222222
Q ss_pred H-HHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043362 172 Q-QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247 (516)
Q Consensus 172 ~-~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 247 (516)
. .+++. -+..+.+|-++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22332 2456889999999999999999999999998754 456788888888889999999999998765 333
Q ss_pred C-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHH
Q 043362 248 D-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGAL 323 (516)
Q Consensus 248 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l 323 (516)
. -..|..+...|.+.++++.|+-.|+++. .+.| +.....++...+.+.|+.|+|+++++++. .+| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 3 3456678889999999999999999998 4566 55667778889999999999999999986 344 45444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
+..+...+++++|.+.++++.++.|++...|..++.+|.+.|+.+.|..-|..+.+...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 56677789999999999999999999999999999999999999999999988866443
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=4.6e-10 Score=109.28 Aligned_cols=369 Identities=12% Similarity=0.026 Sum_probs=289.2
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMY 92 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 92 (516)
.+|+.-.+.|.+.+.++-|..+|...++. .+-+...|......=-..|..+.-..+++.++..- +.....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 56777777888888888888888887765 23344556555555555677788888888877763 44556677777777
Q ss_pred HHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043362 93 VKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169 (516)
Q Consensus 93 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 169 (516)
-..|++..|+.++++.-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..---+++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 7889999998888776543 3467888888888899999999999888764 5676666655555566788899999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043362 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246 (516)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 246 (516)
+++..++. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|+.-.|..+|++....+ +
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 99888886 455567888888999999999999998877654 2 45577777777778889999999999887764 4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043362 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326 (516)
Q Consensus 247 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 326 (516)
-|...|...+..-.+.|+.+.|..+..+..+ .++.+...|..-|.+..+.++-....+.+++.. .|..+.-++...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~l 826 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKL 826 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHH
Confidence 4678888999999999999999999988886 456677888888888888888777777777764 566667777788
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEE
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~ 393 (516)
+....+++.|...|.+.++.+|++..+|..+...+...|.-++-.+++.+-... .|.-|..|..+
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 888899999999999999999999999999999999999999999999877643 34456677544
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=5.4e-12 Score=123.23 Aligned_cols=278 Identities=15% Similarity=0.102 Sum_probs=186.4
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC------CchHHHHHHHHHHHcCChhHHHHHH
Q 043362 63 LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK------GLITWNAMISGYAQNGLATHVLELY 136 (516)
Q Consensus 63 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 136 (516)
..+|...|+.+.. ...-..++...+..+|...+++++|+++|+.+.+. +...|.+.+--..+ +-++..+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 3456666666322 22334466666667777777777777777766543 23455555433221 1122222
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh
Q 043362 137 -REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215 (516)
Q Consensus 137 -~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 215 (516)
+.+... -+-.+.||..+.+.|+-.++.+.|.+.|++.++.. +....+|+.+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 222222 13345677777777777777777777777776643 225667777777777777788888888877766665
Q ss_pred HHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 043362 216 SWTA---IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCM 291 (516)
Q Consensus 216 ~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 291 (516)
.||+ +...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.|+|+++++++.. +.| |+..--..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHH
Confidence 5554 5667888888888888888887743 22455666777778888899999999988873 344 44444455
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 292 VDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+..+...+++++|+..++++. .-|+ ..++..+...|.+.|+.+.|+.-|.-+.+++|.-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 667778899999999999887 4465 67777788889999999999999999999998643
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1e-10 Score=118.80 Aligned_cols=369 Identities=14% Similarity=0.086 Sum_probs=242.7
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCCh-hhHHHHHH---HhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 20 SGYVLNSLVSEAVSLFGKMREQGVEINS-VTMLCLLP---ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 20 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
.++.+.|+.+.|+..|.+.++. .|+. .++..|.- .+-....+..|.+.+...-... ..++.+.+.|.+.|.-.
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFK 283 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhc
Confidence 3455666666666666666654 2322 22222211 1112234455666665555554 56777788888888888
Q ss_pred CCHHHHHHHHcccCCCC------chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHH
Q 043362 96 GSVDYGRKLFDQVPEKG------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV--TFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 96 g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a 167 (516)
|++..+..+...+.... ..+|.-+.++|-..|++++|...|.+..+. .||.+ .+..+...+...|+++.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHH
Confidence 88888887776665433 145777888888888888888888776654 34443 344566778888888888
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCC----CHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCG----NLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+..++ |...|-.+...+-+. +...++..|...
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNA 439 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHH
Confidence 88888887763 456677777777777765 456666666666543 555666665555544 344446666543
Q ss_pred ----HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHH
Q 043362 241 ----LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG--LQPGP------EHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 241 ----~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
...+-.+.....|.+.......|++++|...|........ ..++. .+--.+...+...++.+.|.+.+
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3445556777888888888888999999888888775311 12222 22334556666777888888888
Q ss_pred HhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCC
Q 043362 309 ESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386 (516)
Q Consensus 309 ~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 386 (516)
..+. ..|. +..|.-++......++..+|...++.++..+..++.++..+++.|.+...|..|.+-|..+.+.-...+.
T Consensus 520 k~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 8876 4465 4455555544455678888999999999888888888999998999988999998888777665444434
Q ss_pred ceeEEEECC
Q 043362 387 GYSYVELKG 395 (516)
Q Consensus 387 ~~s~i~~~~ 395 (516)
.+|.|.+++
T Consensus 600 ~YsliaLGN 608 (1018)
T KOG2002|consen 600 AYSLIALGN 608 (1018)
T ss_pred hhHHHHhhH
Confidence 455544443
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=7.2e-11 Score=105.69 Aligned_cols=223 Identities=11% Similarity=0.125 Sum_probs=125.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHH
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN----PFLNNALINMYA 194 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~ 194 (516)
|..-|...|-++.|..+|..+.+.+ .--......++..|-...++++|+.+-.++.+.+-.+. ...|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 3344444444444444444444322 11122333444444444444444444444444332221 123444555555
Q ss_pred hCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 043362 195 RCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
...+.+.|..++.+..+. .+..--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 556666666666655432 22233334556777788888888888777765444455667777888888888888888
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh
Q 043362 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE-SMLVEPDGAVWGALLGACKI---HKNVELAELAFGKVIK 345 (516)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~ 345 (516)
+.++.+. .++...-..+.+.-....-.+.|...+. .+..+|+...+..|+..-.. .|...+...+++.|..
T Consensus 272 L~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 272 LRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 8887754 3444444555555555555566665544 44467888888888876543 3345556666666654
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=9.7e-11 Score=109.14 Aligned_cols=220 Identities=12% Similarity=0.119 Sum_probs=164.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH------------------------------------HhCCCHHH
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY------------------------------------ARCGNLKK 201 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y------------------------------------~~~g~~~~ 201 (516)
+.+.|+++.|.+++.-..+..-..-...-+.|-..+ ...|++++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 567799999999988776643222122222111111 13478888
Q ss_pred HHHHHhcCCCCCHhHHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 202 ARAIFDGMPRKTVVSWTAIIG---GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 202 A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|.+.|++....|...-.++.. .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s- 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS- 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-
Confidence 888888887777665444433 466789999999999887653 344667788888899999999999999988763
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-L-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 279 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
-++.|+.+...|.+.|-+.|+-.+|.+..-.- . +.-+..+..-|..-|....-+++|+..|+++.-+.|+....-..
T Consensus 587 -lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 587 -LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred -cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 45558899999999999999999999875443 3 33467776667788888888999999999999899977655556
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.++.+.|+++.|..+++.+..+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh
Confidence 667778899999999999988653
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.3e-10 Score=104.82 Aligned_cols=326 Identities=14% Similarity=0.098 Sum_probs=227.8
Q ss_pred CChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc-hHHHHHHHHH
Q 043362 45 INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGY 123 (516)
Q Consensus 45 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~ 123 (516)
-|.+.+-.-...+.+.|....|...+...+..- +..|.+-+...--.-+.+.+..+-...+..+. ..=-.+..+|
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 343333333333445555666666655554321 22333333333334455555554444443321 1111244556
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhCCCHH-
Q 043362 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF--GSNPFLNNALINMYARCGNLK- 200 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~- 200 (516)
....+.++++.-.......|++-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-.-..+..+.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 66667788888888888888766655555555666678899999999999988631 134667777663332222222
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 201 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
-|..+++ +.+=.+.|...+.+-|+-.++.++|...|++..+.+ +-....|+.+..-|....+...|.+-++++.+
T Consensus 318 LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--- 392 (559)
T KOG1155|consen 318 LAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--- 392 (559)
T ss_pred HHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---
Confidence 2233322 222234566667777888899999999999998853 22356777888899999999999999999984
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 281 LQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 281 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
+.| |-..|-.|.++|.-.+...-|+-+|++.. .+| |...|.+|...|.+.++.++|++.|.++...+-.+...+..|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 344 77889999999999999999999999887 566 799999999999999999999999999999887677899999
Q ss_pred hhHHHHcCChhHHHHHHHHHHh
Q 043362 358 SNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 358 ~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+.+|.+.++.++|.+.+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999987765
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.9e-10 Score=108.40 Aligned_cols=355 Identities=14% Similarity=0.076 Sum_probs=244.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEIN-SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD-FSVGNCLMTMY 92 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~ 92 (516)
+-+.-.-|-++|.+++|++.|.+..+. .|| +.-|...-.+|...|++++..+--...++.+ |+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 344556788899999999999999986 788 6667777778888999998887776666553 33 23444455566
Q ss_pred HHcCCHHHHHH----------------------HHcc---------cCC-CC-chHHHHHHHHHHH--------------
Q 043362 93 VKCGSVDYGRK----------------------LFDQ---------VPE-KG-LITWNAMISGYAQ-------------- 125 (516)
Q Consensus 93 ~~~g~~~~A~~----------------------~f~~---------~~~-~~-~~~~~~li~~~~~-------------- 125 (516)
-..|++++|+. ++.. +.+ +. +..-.+.|..|..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 66666665542 1111 010 00 1111112222211
Q ss_pred ---------------cC---ChhHHHHHHHHHHH---CCCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043362 126 ---------------NG---LATHVLELYREMKS---LGVCPD---------AVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 126 ---------------~g---~~~~A~~~~~~m~~---~g~~p~---------~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 175 (516)
.+ .+.+|.+.+.+-.. .....+ ..+......-+.-.|+.-.+.+-++..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 11 12222222222110 000111 1111111122334578888889999998
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHH
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTA 251 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t 251 (516)
+.... +...|--+..+|....+.++..+.|++..+ .|..+|-.-.+.+.-.+++++|..=|++.... .| +...
T Consensus 354 ~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYA 430 (606)
T ss_pred hcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHH
Confidence 87533 333477777889999999999999988763 36677877777778888999999999998884 44 4567
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---------HHHHH
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD---------GAVWG 321 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---------~~~~~ 321 (516)
|..+..+.-+.+.++++...|+...++ ++..+++|+.....+...+++++|.+.|+... .+|+ +.+--
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 777777778899999999999999974 56678899999999999999999999999875 3443 22223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+++..- -.+++..|+.+++++.+++|....+|..|+..-.+.|+.++|.++|++-..
T Consensus 509 a~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 509 ALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333322 348999999999999999999999999999999999999999999997643
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=3.5e-10 Score=114.21 Aligned_cols=355 Identities=13% Similarity=0.115 Sum_probs=263.0
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 043362 22 YVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG 101 (516)
Q Consensus 22 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 101 (516)
|++ |+.++|..++.+..+.. +.+...|.+|...+-+.|+.+++...+-.+.-.. +.|...|-.+.....+.|.+++|
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 444 99999999999999875 6677889999999999999999987765554444 66778999999999999999999
Q ss_pred HHHHcccCCCCchHH---HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHH
Q 043362 102 RKLFDQVPEKGLITW---NAMISGYAQNGLATHVLELYREMKSLGVCPDAV----TFVGVLSSCAHLGAHSVGLEVEQQI 174 (516)
Q Consensus 102 ~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~ 174 (516)
.-.|.+..+.++.-| ---+..|.+.|+...|++.|.++.....+.|.. +.-.++..+...++-+.|.+.+...
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999887665333 334678899999999999999998863222222 2333455666677778888888777
Q ss_pred HHc-CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC----CCH----------------------hHHH----HHHHH
Q 043362 175 QAN-GFGSNPFLNNALINMYARCGNLKKARAIFDGMPR----KTV----------------------VSWT----AIIGG 223 (516)
Q Consensus 175 ~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----------------------~~~~----~li~~ 223 (516)
... +-..+...++.++.+|.+...++.|......+.. +|. .+|+ .+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 662 2234556788899999999999988777654432 111 1111 12233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRP--DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
+......+....+.....+..+.| +...|.-+..++.+.|.+.+|..+|..+... ...-+..+|-.+...|-..|..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhH
Confidence 444444444444555555555444 4567889999999999999999999999865 3333577999999999999999
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---------CCCccchHHHhhHHHHcCChhHH
Q 043362 302 NEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLE---------PMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
++|.+.++... ..|+ ...--+|-..+.+.|+.++|.+.++.+..-+ +++..........|...|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999886 5564 5566667788899999999999999876433 12233455677888999999988
Q ss_pred HHHHHHHHhC
Q 043362 371 MRVRMMMRER 380 (516)
Q Consensus 371 ~~~~~~m~~~ 380 (516)
..+-..|.+.
T Consensus 546 i~t~~~Lv~~ 555 (895)
T KOG2076|consen 546 INTASTLVDD 555 (895)
T ss_pred HHHHHHHHHH
Confidence 7777777653
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.44 E-value=3e-09 Score=103.74 Aligned_cols=353 Identities=12% Similarity=0.006 Sum_probs=248.7
Q ss_pred CCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 043362 25 NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKL 104 (516)
Q Consensus 25 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 104 (516)
....+.|.-++.+..+- -|.. .-|.-++++...++.|+.++....+. ++.+..+|.+-...=-..|+.+...++
T Consensus 389 lE~~~darilL~rAvec--cp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC--CPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34455566666665543 1221 12334455556666666666665543 455666666555555566666665555
Q ss_pred Hccc---------------------------------------CCCC------chHHHHHHHHHHHcCChhHHHHHHHHH
Q 043362 105 FDQV---------------------------------------PEKG------LITWNAMISGYAQNGLATHVLELYREM 139 (516)
Q Consensus 105 f~~~---------------------------------------~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 139 (516)
.++- ..-+ -.+|+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 5432 1111 135666666667777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhH
Q 043362 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVS 216 (516)
Q Consensus 140 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~ 216 (516)
.+. ++-+...|.-....--.-|..+.-..++++++..- +.....|-....-+...|+...|+.++...-+ .+...
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 654 23344555555555555677777777777777763 44556666667777778898888888776542 35678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 296 (516)
|-+-+.....+.+++.|..+|.+... ..|+...|.--+..---.++.++|.++++...+. ++.-...|..+.+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 88888888899999999999998877 4677777776666666788999999999998864 3334567888899999
Q ss_pred hcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 297 RAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
+.++++.|.+.|..-. .-| .+..|-.|...--+.|++-.|..++++..-.+|++...|...+.+-.+.|+.++|..+.
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888765 346 47888888888888899999999999999999999999999999999999999999988
Q ss_pred HHHHhCCCCCCCceeEE
Q 043362 375 MMMRERRLKKDPGYSYV 391 (516)
Q Consensus 375 ~~m~~~~~~~~~~~s~i 391 (516)
.+..+.- |..+.-|.
T Consensus 777 akALQec--p~sg~LWa 791 (913)
T KOG0495|consen 777 AKALQEC--PSSGLLWA 791 (913)
T ss_pred HHHHHhC--CccchhHH
Confidence 8776542 33444553
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=2.8e-13 Score=90.42 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=48.5
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhc
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 59 (516)
||+++||+||++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=4.8e-10 Score=100.49 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=90.5
Q ss_pred CCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHHcCCHHHHH
Q 043362 26 SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL---DFSVGNCLMTMYVKCGSVDYGR 102 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~ 102 (516)
.++++|+++|-+|.+.. +-+..+-.+|.+.+.+.|..+.|+.+|+.++++.--+ .....-.|..-|.+.|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34445555555554421 1122223334444444455555555555444431000 0112233444444455555555
Q ss_pred HHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043362 103 KLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV----TFVGVLSSCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 103 ~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~ 175 (516)
.+|..+.+.+. .+.-.|+..|.+..++++|+++-+++.+.+-++..+ .|.-+...+....+.+.|+.++.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55554444221 233344445555555555555544444433222221 12223333333344444555554444
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV----VSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.|. .+...+..+|.+.|+.++....+.++.+
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 432 12233333344444455555555555554443332 1233444445555555555555544444
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=2.5e-09 Score=98.91 Aligned_cols=277 Identities=13% Similarity=0.040 Sum_probs=175.0
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC--C--chHHHHHHHHHHHcCChhHHHHHH
Q 043362 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK--G--LITWNAMISGYAQNGLATHVLELY 136 (516)
Q Consensus 61 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~ 136 (516)
|++.+|++....-.+.+ +.....|..-..+--..|+.+.|-.++.+..+. | ....-+........|++..|..-.
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 55666665555544443 111222333334444556666666665555443 2 234445555555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP-------FLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 137 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
.++.+.+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6555543 223444555556666666666666666666665544332 34566666555555555555666666
Q ss_pred CC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHH
Q 043362 210 PR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286 (516)
Q Consensus 210 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 286 (516)
+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+.. .+-.+.+.++.+.-.+..+.-.+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 63 356666677778888888888888888888877666622 23345667777777777777666544444 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
.+.+|...|.+.+.+.+|...|+... ..|+..+|+-+..++.+.|+.++|.+..++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77788888888888888888888665 668888888888888888888888888887764
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1e-10 Score=106.85 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=157.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 258 (516)
....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677778888888888888888876542 356677788888888999999999998888753 3355667777888
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A 336 (516)
+...|++++|.+.+...............+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999887642222345567778888999999999999998875 334 467788888889999999999
Q ss_pred HHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
...+++..+..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888878888889999999999999998887754
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-09 Score=102.05 Aligned_cols=285 Identities=11% Similarity=0.023 Sum_probs=163.9
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc------hHHHHHHHHHHHcC
Q 043362 54 LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------ITWNAMISGYAQNG 127 (516)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g 127 (516)
..++......+++.+-.+.....|++.+...-+....++-...++++|+.+|+.+.+.|+ .+|...+ |+++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 345555556667777777777777766666666666666667777777777777765543 3444433 33333
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHh
Q 043362 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207 (516)
Q Consensus 128 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 207 (516)
+..-+.-.-....-...+ +.|..++.+-|+-.++.+.|...|++.++.+ +....+|+.+.+-|....+...|.+-|+
T Consensus 312 ~skLs~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222211110111111122 2455666666666666777777777776654 3345566666666777777777766666
Q ss_pred cCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 043362 208 GMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284 (516)
Q Consensus 208 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 284 (516)
... .+|-..|-.+.++|.-.+.+.-|+-.|++.... -+-|...|.+|...|.+.++.++|+..|.+...- -..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte 465 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTE 465 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccc
Confidence 554 335566666777777777777777777766663 1334566667777777777777777777666642 2224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML--------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 346 (516)
...+..|.++|.+.++.++|...|++-. ..|. ....--|..-+.+.+++++|.....+....
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 4566666777777777777666665432 1121 111111334455666666666555544443
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=4.1e-10 Score=111.21 Aligned_cols=232 Identities=16% Similarity=0.148 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCch-HHHHHHHHHHHhCCCHHHHHHHHhcCCC--------C
Q 043362 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-----GF-GSNP-FLNNALINMYARCGNLKKARAIFDGMPR--------K 212 (516)
Q Consensus 148 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~ 212 (516)
..|+..+...|...|+++.|..++++.++. |. .|.+ ...+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 457777889999999999999999988774 21 2222 2345577889999999999999987742 1
Q ss_pred ---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcC--
Q 043362 213 ---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-----SGIR-PDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNKYG-- 280 (516)
Q Consensus 213 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 280 (516)
-..+++.|..+|.+.|++++|...+++..+ .|.. |.. ..++.+...|...+.+++|..++....+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235677788899999999998888877653 1222 222 3466777889999999999999998776544
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-------C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-
Q 043362 281 LQPG----PEHYTCMVDLLGRAGQLNEALELIESML-------V--EP-DGAVWGALLGACKIHKNVELAELAFGKVIK- 345 (516)
Q Consensus 281 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~--~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~- 345 (516)
+.++ ..+++.|...|...|++++|.++++++. . .+ .....+.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4679999999999999999999999875 1 22 256677888999999999999999998765
Q ss_pred ---cCCCC---ccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 346 ---LEPMN---TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 346 ---~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+|++ ..+|..|+.+|.+.|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444 45688999999999999999999988763
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.8e-08 Score=94.97 Aligned_cols=375 Identities=8% Similarity=0.063 Sum_probs=267.7
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 88 (516)
.+++..|-.-+..=.++..+..|..++++....-...|..-|. -+-.=-..|++..|+++|+.-..- .|+...|++.
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sf 180 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSF 180 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 4677778778888888888888888888887652222332222 222223468899999999887654 7999999999
Q ss_pred HHHHHHcCCHHHHHHHHccc--CCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCh
Q 043362 89 MTMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GV-CPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~~~~~~g~~ 164 (516)
|+.=.+-..++.|..++++. ..|++.+|--...-=.++|+...|..+|....+. |- .-+...|++...--.+...+
T Consensus 181 I~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999885 4678888888888888889999999998887653 10 11222334444434456678
Q ss_pred HHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhCCCHHHHHHHH--------hcCCCC---CHhHHHHHHHHHHhcCCHH
Q 043362 165 SVGLEVEQQIQANGFGSN--PFLNNALINMYARCGNLKKARAIF--------DGMPRK---TVVSWTAIIGGYGIHGHGE 231 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~--------~~m~~~---~~~~~~~li~~~~~~g~~~ 231 (516)
+.|.-+|+..+.. ++.+ ...|..+...=-+-|+.....+.. +.+... |-.+|--.+..-...|+.+
T Consensus 261 ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 261 ERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence 8888888888875 2333 455666665555556654443332 222222 5567777777778889999
Q ss_pred HHHHHHHHHHHcCCCCCHH-------HHHHH---HHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH----Hh
Q 043362 232 VAVQLFDEMLKSGIRPDGT-------AFVSV---LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL----GR 297 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~-------t~~~l---l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~ 297 (516)
...++|++.... ++|-.. .|.-+ +-.-....+++.+.++++..++ -++....|+.-+--+| .+
T Consensus 340 ~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 340 RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHH
Confidence 999999998875 566321 12111 1122357889999999998885 3444555655554444 47
Q ss_pred cCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 298 AGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 298 ~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
+-++..|.+++.... .-|-..++...|..-.+.++++....++++.++..|.+-.+|.-.+..-...|+++.|..+|..
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 889999999998876 5688889988888888999999999999999999999988999999988999999999999998
Q ss_pred HHhCCCCCCCceeE
Q 043362 377 MRERRLKKDPGYSY 390 (516)
Q Consensus 377 m~~~~~~~~~~~s~ 390 (516)
..+....--|..-|
T Consensus 497 Ai~qp~ldmpellw 510 (677)
T KOG1915|consen 497 AISQPALDMPELLW 510 (677)
T ss_pred HhcCcccccHHHHH
Confidence 88765443444444
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=8e-12 Score=83.37 Aligned_cols=50 Identities=34% Similarity=0.602 Sum_probs=46.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 043362 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261 (516)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 261 (516)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=3.4e-09 Score=98.00 Aligned_cols=277 Identities=16% Similarity=0.130 Sum_probs=210.5
Q ss_pred cCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 171 (516)
.|++.+|+++..+-.+.. +..|..-+.+.-+.|+.+.+-.++.+..+..-.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 699999999998765433 35666667778889999999999999877532444555666667788999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-----------hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV-----------VSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 172 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
..+.+.+ +.++.+......+|.+.|++.....+...+.+... .+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998876 45678889999999999999999999998875422 46777777666666666655566665
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGA 318 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~ 318 (516)
... .+-++..-.+++.-+.+.|+.++|.++.....++ +..|+.. .++ ...+-++.+.-.+..+.-. ..| ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 443 4556667778888899999999999999998876 5555511 111 1234455444444433322 123 468
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.+|...|.+++.+.+|...|+..++..|.. ..|..++.++.+.|+..+|.+++++..-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88999999999999999999999999988854 6899999999999999999999987763
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=2.4e-09 Score=110.58 Aligned_cols=257 Identities=14% Similarity=0.029 Sum_probs=185.6
Q ss_pred CchHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHHH
Q 043362 112 GLITWNAMISGYAQ-----NGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAH---------LGAHSVGLEVEQQIQA 176 (516)
Q Consensus 112 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~ 176 (516)
+..+|...+.+-.. .+..++|+++|++..+. .|+ ...+..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34556666665322 13467899999998875 454 4455555444432 2447899999999998
Q ss_pred cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHH
Q 043362 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG-TAF 252 (516)
Q Consensus 177 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 252 (516)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 45678888899999999999999999998753 3 5668888999999999999999999999885 4443 233
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKI 329 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~ 329 (516)
..++..+...|++++|...+.++.+. ..| ++..+..+...|...|++++|...+.++. ..|+ ...++.+...|..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34455566789999999999998754 234 45567778888999999999999998875 3454 4445555566677
Q ss_pred cCCHHHHHHHHHHHhhcC---CCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 330 HKNVELAELAFGKVIKLE---PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.| +.|...++++.+.. |.++ ..+...|+-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 76 47777777776633 4433 3366777778888887777 7776653
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=1.1e-09 Score=110.20 Aligned_cols=82 Identities=23% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 043362 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291 (516)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 291 (516)
++..++.+.+..-.-.|+.+.|..++.+|.+.|++.+..-|-.|+-+ .++...+..++..|.+. |+.|+.+|+.-.
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 45555555555555556666666666666665555555555555433 44555555555555543 555555555544
Q ss_pred HHHHHh
Q 043362 292 VDLLGR 297 (516)
Q Consensus 292 i~~~~~ 297 (516)
+-.+..
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 433333
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.4e-09 Score=103.03 Aligned_cols=257 Identities=13% Similarity=0.048 Sum_probs=207.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 043362 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195 (516)
Q Consensus 116 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 195 (516)
.-.-..-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=.++++. .|....+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 333445567789999999999998876 3556566666667888888877777776677765 46678889999999999
Q ss_pred CCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 196 CGNLKKARAIFDGMPRKT---VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..+...-+. ++-....+.-+..-|.+.++.+.|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999876443 468999999999999999999999887663 2222333444556788899999999999
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 273 YGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML--------VEP-DGAVWGALLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 273 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~ 342 (516)
.... ++.| |+.+.+-+.-.....+.+.+|...|+... ..+ -..+++.|..+|++.+.+++|+..+++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9987 5555 67777777777777889999999988764 112 245688889999999999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.+.+.|.++.+|..++-+|...|+++.|...|.+..
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999998775
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=1.6e-09 Score=98.90 Aligned_cols=194 Identities=14% Similarity=0.044 Sum_probs=121.3
Q ss_pred hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHH
Q 043362 47 SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGY 123 (516)
Q Consensus 47 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~ 123 (516)
...+..+...+...|++++|.+.++.+++.. +.+...+..+...|...|++++|.+.|++..+. +...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555666666666666666666666553 344556666666666777777777666655432 234566666666
Q ss_pred HHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHH
Q 043362 124 AQNGLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 202 (516)
...|++++|.+.|++.......| ....+..+..++...|++++|...+.+..+.. +.+...+..+...+.+.|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766532112 23345555666677777777777777776653 23455666677777777777777
Q ss_pred HHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 203 RAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 203 ~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
.+.+++.. ..+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77776543 23455555666677777777777777776654
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=3.6e-09 Score=109.23 Aligned_cols=258 Identities=9% Similarity=-0.044 Sum_probs=167.9
Q ss_pred CChhhHHHHHHHhh-----cCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHH---------cCCHHHHHHHHcccCC
Q 043362 45 INSVTMLCLLPICV-----DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK---------CGSVDYGRKLFDQVPE 110 (516)
Q Consensus 45 p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~---------~g~~~~A~~~f~~~~~ 110 (516)
.+...|...+.+-. ..+++++|.+.++..++.. +.+...+..+..+|.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44444545554431 1234578888888888764 3345566666555442 2447888888888765
Q ss_pred CC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHH
Q 043362 111 KG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187 (516)
Q Consensus 111 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 187 (516)
.+ ..+|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++++.+.... +...+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 43 4677788888888899999999998888753 334556777778888889999999999888886422 223333
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC---C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcc
Q 043362 188 ALINMYARCGNLKKARAIFDGMPR---K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA-FVSVLSACSHA 262 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~ 262 (516)
.++..+...|++++|.+.+++... | +...+..+..+|...|+.++|...++++... .|+..+ .+.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 344456667888889888877632 2 4556777778888899999999988887653 444433 33444455666
Q ss_pred CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
| +.+...++.+.+...-.|....+ +-..|.-.|+-+.+... +++.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 6 47777777766543333333333 33344555666666655 6664
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.24 E-value=5.6e-10 Score=112.24 Aligned_cols=258 Identities=14% Similarity=0.181 Sum_probs=190.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC
Q 043362 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213 (516)
Q Consensus 134 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 213 (516)
.++..+...|+.|+.+||..++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999998888899999999999999999887765 678
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
..+|+.+..+|.++|+... ++..++ -+..+...++..|....-..++..+.-..+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8899999999999999766 333333 2233455666677766666666655433345556543 455
Q ss_pred HHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 294 LLGRAGQLNEALELIESMLVE-PDGAVWGALLGACKIHK-NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
.+.-.|.++.+.+++..+|.. .+. .....+.-+.... .+++-....+...+ .| ++.+|..+...-..+|+.+.|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHH
Confidence 566778899999999888821 111 1111244444333 33443344444444 44 5578999999999999999999
Q ss_pred HHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC
Q 043362 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432 (516)
Q Consensus 372 ~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~ 432 (516)
.++..|+++|++-.+.+.|-.+-+. . ....++.+.+-|++.|+.|+
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g~--------~-------~~q~~e~vlrgmqe~gv~p~ 270 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLGI--------N-------AAQVFEFVLRGMQEKGVQPG 270 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhcC--------c-------cchHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999665431 1 12234667889999999998
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.1e-09 Score=99.41 Aligned_cols=282 Identities=11% Similarity=0.062 Sum_probs=167.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
-.-.+-+-..+++.+...+++...+.. ++....+..-|..+...|+..+-..+-..+++.- |....+|-++.--|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 334445555677777777777776653 5555555555556666666666555555555553 55566777777777777
Q ss_pred CCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043362 96 GSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172 (516)
Q Consensus 96 g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 172 (516)
|...+|++.|.+...-|. ..|-.+...|+-.|.-++|+..+...-+. ++-....+--+.--|.+.+++..|.+.|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 777777777777655443 57777777777777777777777665442 11111222233444666777777777777
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043362 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252 (516)
Q Consensus 173 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 252 (516)
+..... |.|+.+.+-+.-+....+.+.+|..+|+.... ..+..... ...-..++
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~e-~~~w~p~~ 458 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLNE-KIFWEPTL 458 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhcccc-ccchhHHH
Confidence 776653 45666666666666666666666666654321 00110010 00123455
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHH
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACK 328 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~ 328 (516)
+.|..+|.+.+.+++|+..+++... -.+.+..++.++.-.|...|+++.|.+.|.+.. .+|+..+...++..+.
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 6666666666666666666666653 223356666666666666666666666666655 5566655555555443
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.4e-08 Score=90.27 Aligned_cols=285 Identities=10% Similarity=-0.016 Sum_probs=204.8
Q ss_pred CchHHHHHHHHHHHh-CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHH---HHHHHHHcCChhHHHHHHH
Q 043362 62 YLWLGMCCHCICVKF-GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA---MISGYAQNGLATHVLELYR 137 (516)
Q Consensus 62 ~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~ 137 (516)
+-..+.+.+..+... -++.|+....++.+.|...|+.++|...|++....|+.+..+ ..-.+.+.|+++....+..
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 333344444433332 357788889999999999999999999999887666533322 2333567888888888777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC--C-CCH
Q 043362 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--R-KTV 214 (516)
Q Consensus 138 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~-~~~ 214 (516)
.+.... +-+...|..-+......++++.|..+-++.++.. +.++..+-.-...+...|+.++|.-.|+... . -+.
T Consensus 291 ~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 291 YLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred HHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence 776531 2233334444444556778888888888888764 3345555555666778899999999998654 3 378
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-cCChHHHHHHHHHhHHhcCCCCC-HHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL-SACSH-AGLTDKGLEYFYGMKNKYGLQPG-PEHYTCM 291 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 291 (516)
.+|.-++.+|...|++.+|..+-+...+. .+.+..++..+. ..|.. ...-++|..++++-. .+.|+ ....+.+
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLI 444 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHH
Confidence 89999999999999999998877765543 344555554442 23322 233478888888776 44665 3455677
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 292 VDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
...+...|..+++..++++.. ..||....+.|...+...+.+++|...|..++.++|++..
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 788889999999999999876 5689999999999999999999999999999999998763
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.2e-09 Score=96.39 Aligned_cols=225 Identities=16% Similarity=0.091 Sum_probs=191.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcC
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--K-TVVSWTAIIGGYGIHG 228 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g 228 (516)
+.+..+|.+.|.+.+|...++..++.. |-+.+|-.|-..|.+..+.+.|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 567788999999999999999988864 4566777888999999999999999988764 3 4444555777888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
+.++|.++|+...+.. +.+......+...|.-.++++.|..+++++.+. |+. +++.|+.+.-.+.-.+++|-++--|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999988852 445666777777888899999999999999975 654 7888888888888899999999988
Q ss_pred HhcC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 309 ESML---VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 309 ~~m~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
++.. ..|+ ..+|-.|.......||+..|.+.|+-.+..+|++..+++.|+-.-.+.|+.++|..++....+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8775 3354 67898898888899999999999999999999999999999999999999999999999887653
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=2.2e-08 Score=99.10 Aligned_cols=227 Identities=16% Similarity=0.131 Sum_probs=151.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHH-----cC--CCCchH
Q 043362 119 MISGYAQNGLATHVLELYREMKSL-----G-VCPDAVT-FVGVLSSCAHLGAHSVGLEVEQQIQA-----NG--FGSNPF 184 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g--~~~~~~ 184 (516)
+...|...|+++.|..+++...+. | ..|...+ ...+...|...+.+++|..+|+.+.. .| .+.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 555666666666666666554432 1 1222222 22345556666777777777666654 12 112234
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCC----------CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC--
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMP----------RKTVV-SWTAIIGGYGIHGHGEVAVQLFDEMLKS---GIRPD-- 248 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-- 248 (516)
+++.|..+|.+.|++++|...+++.. .+.+. ..+.++..+...+++++|..+++...+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 55666677777787777766665442 11222 3555677788888899998888875541 12223
Q ss_pred --HHHHHHHHHHHhccCChHHHHHHHHHhHHhc----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------
Q 043362 249 --GTAFVSVLSACSHAGLTDKGLEYFYGMKNKY----G-LQP-GPEHYTCMVDLLGRAGQLNEALELIESML-------- 312 (516)
Q Consensus 249 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------- 312 (516)
..+++.+...|.+.|++++|.++|+.+.... + ..+ ....++.|...|.+.+++++|.++|.+..
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 3578899999999999999999999887652 1 122 24567888899999999999998888754
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 313 VEPD-GAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 313 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3354 67899999999999999999999998874
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=3.4e-09 Score=95.15 Aligned_cols=229 Identities=15% Similarity=0.133 Sum_probs=195.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
+.|..+|.+.|.+.+|...|+.-.+. .|-..||..+-.+|.+..+...|..++.+-++. ++-|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999988775 577788999999999999999999999998876 456666667778888889
Q ss_pred CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043362 197 GNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273 (516)
Q Consensus 197 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 273 (516)
++.++|.++|+...+ .++.+...+..+|.-.++++-|+..|+++...|+. +...|+.+.-.|.-.+.+|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999988764 36667777788899999999999999999999865 67889999999999999999999999
Q ss_pred HhHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 274 GMKNKYGLQPG--PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 274 ~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
+.... --.|+ ..+|-.|.......|++.-|.+.|+-.. ..| ....++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98864 33344 4678888888888999999999998776 344 4788999998889999999999999999988886
Q ss_pred C
Q 043362 350 N 350 (516)
Q Consensus 350 ~ 350 (516)
-
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 4
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=1.1e-06 Score=83.18 Aligned_cols=363 Identities=11% Similarity=0.045 Sum_probs=269.5
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
-+-.=-..|++..|.++|++-... .|+...|.+.++.=.+-..++.|+.+++..+-. .|++..|--....=.++|.
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 333334568999999999988765 899999999999999999999999999988765 6999999999999999999
Q ss_pred HHHHHHHHcccCCC---C---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHH
Q 043362 98 VDYGRKLFDQVPEK---G---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSCAHLGAHSVGLE 169 (516)
Q Consensus 98 ~~~A~~~f~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~ 169 (516)
+..|..+|+...+. + ...+++...-=.++..++.|.-+|+-.+.. ++-+ ...|......--+-|+......
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999876532 1 235555555556678889999898887765 3333 3445544444444555443332
Q ss_pred H--------HHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHH--------HHhcC
Q 043362 170 V--------EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK-----TVVSWTAIIGG--------YGIHG 228 (516)
Q Consensus 170 ~--------~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~--------~~~~g 228 (516)
. ++..++.+ +.|-.+|--.+..-...|+.+...++|++.... .-..|...|-. =....
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 34444433 567777777888888889999999999987521 11223332221 12467
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC----SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 304 (516)
+.+.+.++|+...+. ++...+||.-+--.| .++.++..|.+++.... |.-|-..++...|..=.+.+.+|..
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 889999999998884 566677877654444 45789999999999998 8899999999999999999999999
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 305 LELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN--TGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 305 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..++++.. ..| +-.+|.-....-...|+.+.|..+|+-++....-+ ...+-..+..-...|.++.|..+++.+.+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999876 556 67889888888889999999999999887643211 123445556667789999999999999876
Q ss_pred CCCCCCceeEEEE
Q 043362 381 RLKKDPGYSYVEL 393 (516)
Q Consensus 381 ~~~~~~~~s~i~~ 393 (516)
.-.. -+||..
T Consensus 537 t~h~---kvWisF 546 (677)
T KOG1915|consen 537 TQHV---KVWISF 546 (677)
T ss_pred cccc---hHHHhH
Confidence 4321 257654
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.5e-08 Score=95.86 Aligned_cols=210 Identities=15% Similarity=0.109 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHHcC-CCCc--hHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANG-FGSN--PFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQL 236 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 236 (516)
..+.+..-+.+++... ..|+ ...|..+...|.+.|++++|...|++..+ .+...|+.+...|...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555565665422 1222 34566677778888888888887776542 3567788888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 043362 237 FDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--V 313 (516)
Q Consensus 237 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~ 313 (516)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|.+.. .
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8887763 443 556667777777788888888888887753 4432211222223345667888888885543 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 314 EPDGAVWGALLGACKIHKNVELAELAFGKVI-------KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 314 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.|+...| .+. ....|+...+ ..++.+. ++.|+...+|..++.+|.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 122 2223444333 2333333 3445556678888888888888888888888877544
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=9.3e-08 Score=90.53 Aligned_cols=216 Identities=13% Similarity=0.011 Sum_probs=139.2
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 127 GLATHVLELYREMKSLG-VCPD--AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|.+.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34566666666666431 2222 2345666667777788888888887777764 345677888888888888888888
Q ss_pred HHHhcCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 204 AIFDGMPR--K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 204 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
+.|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88877643 2 4567777888888888888888888888774 44433222222233456778888888866553 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH--HHHHHHhcC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 281 LQPGPEHYTCMVDLLGRAGQLNE--ALELIESML-----VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 281 ~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m~-----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
..|+...+ .++.. ..|+..+ +.+.+.+.. ..| ....|..+...+...|++++|+..|+++++.+|.+
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 23332222 23332 3444433 332232211 112 24678889999999999999999999999999754
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.3e-07 Score=87.00 Aligned_cols=311 Identities=13% Similarity=0.018 Sum_probs=203.5
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHc
Q 043362 51 LCLLPICVDPGYLWLGMCCHCICVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQN 126 (516)
Q Consensus 51 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~ 126 (516)
-+..+-|-+.+.+++|++.+.+.+.. .|| +..|.....+|...|++++..+--....+-++ -+++--.+++-+.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 33445667888999999999998887 566 77788888999999999888877666655553 3555566677777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHH-cC--CCCchHHHHHHHHHH--
Q 043362 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ--------QIQA-NG--FGSNPFLNNALINMY-- 193 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~-~g--~~~~~~~~~~li~~y-- 193 (516)
|++++|+.=..- .+++..+....-.-.+.+++. .-.+ .+ .-|+....++....+
T Consensus 197 g~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 197 GKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred ccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 777776532221 222222221111111111111 1111 11 112221111111111
Q ss_pred -------------------------HhC-CCHHHHHHHHhcC-------CCCC---------HhHHHHHHHHHHhcCCHH
Q 043362 194 -------------------------ARC-GNLKKARAIFDGM-------PRKT---------VVSWTAIIGGYGIHGHGE 231 (516)
Q Consensus 194 -------------------------~~~-g~~~~A~~~~~~m-------~~~~---------~~~~~~li~~~~~~g~~~ 231 (516)
... ..+..|...+.+- ...+ ..+.+.-..-+.-.|+.-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 100 0122222222111 0111 111211222234568888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
.|..-|+........++. .|.-+..+|....+.++..+.|+...+ +.| ++.+|..-.+++.-.+++++|..=|++
T Consensus 344 ~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886444333 277778889999999999999999984 444 677888888888888999999999998
Q ss_pred cC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 311 ML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 311 m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.. ..| ++..|-.+..+.-+.+.+++++..|++..+..|..+..|...+.++...+++++|.+.++...+.
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 87 556 46777777777677789999999999999999999999999999999999999999999988753
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=1.3e-06 Score=87.73 Aligned_cols=255 Identities=15% Similarity=0.043 Sum_probs=153.8
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCChhh-HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC--
Q 043362 20 SGYVLNSLVSEAVSLFGKMREQGVEINSVT-MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG-- 96 (516)
Q Consensus 20 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-- 96 (516)
..+...|++++|++.+..-... -+|..+ +......+.+.|+.++|..++..+++.+ +.|..-|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 4457889999999999775543 455544 4556677888999999999999999987 556666666666663222
Q ss_pred ---CHHHHHHHHcccCC----------------------------------CCc-hHHHHHHHHHHHcCChhHHHHHHHH
Q 043362 97 ---SVDYGRKLFDQVPE----------------------------------KGL-ITWNAMISGYAQNGLATHVLELYRE 138 (516)
Q Consensus 97 ---~~~~A~~~f~~~~~----------------------------------~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 138 (516)
+.+....+++++.+ +++ .+++.+-..|.......-..+++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 45666666666532 122 2334444444433333333344444
Q ss_pred HHHC----C----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHH
Q 043362 139 MKSL----G----------VCPDAV--TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202 (516)
Q Consensus 139 m~~~----g----------~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 202 (516)
.... + -+|+.. ++..+...|...|++++|.++.+..++.. |..+..|..-...|-+.|++.+|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3321 1 123332 33444555667777777777777777753 22356666777777777777777
Q ss_pred HHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHhccCChHHHHHH
Q 043362 203 RAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA--------FVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 203 ~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~a~~~~g~~~~a~~~ 271 (516)
.+..+....- |-..=+..+..+.+.|+.++|.+++......+..|-... ......+|.+.|++..|+..
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777665543 334445556666777777777777777665554332211 13345566777777777777
Q ss_pred HHHhHHh
Q 043362 272 FYGMKNK 278 (516)
Q Consensus 272 ~~~~~~~ 278 (516)
|..+.+.
T Consensus 328 ~~~v~k~ 334 (517)
T PF12569_consen 328 FHAVLKH 334 (517)
T ss_pred HHHHHHH
Confidence 7666543
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.7e-06 Score=78.38 Aligned_cols=262 Identities=10% Similarity=-0.061 Sum_probs=178.0
Q ss_pred CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 043362 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT-FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189 (516)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 189 (516)
.|+.....+...+...|+.++|+..|++.+.. .|+..+ .-.-.-.+.+.|+++....+...+.... +.....|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 35667788888888888888888888887653 344332 1111122346677777766666655432 1122222222
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 043362 190 INMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 266 (516)
........+++.|..+-++..+. ++..+-.-...+.+.|+.++|.-.|+..+.. -+-+...|..|+..|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHH
Confidence 33344456778888777766543 4444444456778889999999999988774 1345678999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 267 KGLEYFYGMKNKYGLQPGPEHYTCMV-DLLG-RAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 267 ~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 342 (516)
+|...-+...+. +..+..+.+.+. ..+. ....-++|.+++++.. .+|+ ....+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 988777766642 333444444432 2222 2233578888888765 6677 56667777888899999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+...|++ ..++.|+..+...+.+++|...|.....
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99888866 5888999999999999999999887754
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=4.2e-08 Score=84.39 Aligned_cols=163 Identities=16% Similarity=0.112 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDL 294 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 294 (516)
+...+.-+|.+.|+...|..-+++.++.. +-+..++..+...|...|..+.|.+-|++..+ +.| +..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34456677888888888888888888752 23456777888888888888888888888874 345 56677888888
Q ss_pred HHhcCCHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH
Q 043362 295 LGRAGQLNEALELIESMLVEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
+|..|++++|...|++....|+ ..+|..+.-...+.|+.+.|...+++.++.+|+.+.+...+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 8889999999999988764443 567888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 043362 371 MRVRMMMRERRL 382 (516)
Q Consensus 371 ~~~~~~m~~~~~ 382 (516)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988876544
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=7.7e-07 Score=89.33 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-------------CCCCCHH--HHHHHHHHHH
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY-------------GLQPGPE--HYTCMVDLLG 296 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~ 296 (516)
.+...+..+...|+++ +|+.|-..|......+-..+++....... .-.|+.. ++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3444556666677553 45555555555555555555555443221 0123332 3355577788
Q ss_pred hcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 297 RAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
..|++++|++++++.. ..|+ +..|..-...+...|++.+|....+.+.++++.|...-.-.+..+.++|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888776 5575 6777777788888899999998888888888888766666777788888999888888
Q ss_pred HHHHhCCC
Q 043362 375 MMMRERRL 382 (516)
Q Consensus 375 ~~m~~~~~ 382 (516)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 87766554
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=8e-06 Score=79.66 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=194.9
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH--HHHHH--HH
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC--LMTMY--VK 94 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--ll~~~--~~ 94 (516)
++-+.++|++++|+....+++..+ +-|...+..-+-++.+.+.++.|..+.+.- + -..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHHH
Confidence 456777889999999999998765 555666777777788888888887543321 1 0011111 12333 25
Q ss_pred cCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----------------------------CC
Q 043362 95 CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV----------------------------CP 146 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------~p 146 (516)
.+..|+|.+.++.....+..+...-...+-+.|++++|+++|+.+.+.+. .|
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 56666666666644444433444445555666666666666666633321 01
Q ss_pred CHHHHHHHHH---HHHhcCChHHHHHHHHHHHHcCC-------------CCchH-HHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 147 DAVTFVGVLS---SCAHLGAHSVGLEVEQQIQANGF-------------GSNPF-LNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 147 ~~~t~~~ll~---~~~~~g~~~~a~~~~~~~~~~g~-------------~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
..||..+.+ .+...|++.+|+++++...+.+. ..... .---|.-.+-..|+.++|..+|...
T Consensus 172 -e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 -EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred -cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 112332222 23345666666666666522110 00000 1112333344556666666655544
Q ss_pred CCC---CH------------------------------------------------------------------------
Q 043362 210 PRK---TV------------------------------------------------------------------------ 214 (516)
Q Consensus 210 ~~~---~~------------------------------------------------------------------------ 214 (516)
... |.
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 211 00
Q ss_pred ---------hHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH--------Hh
Q 043362 215 ---------VSWTAIIGGY--GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY--------GM 275 (516)
Q Consensus 215 ---------~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~~ 275 (516)
..+.+++... ++...+.+|.+++...-+....-........+......|+++.|.+++. .+
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 0111111111 1111233444444443332111112344455566677899999999988 44
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043362 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 276 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 346 (516)
.+ +.-.+.+..+++..|.+.++-+-|..++.+.. ..+. ..+|.-+...-.++|+-++|..+++++.+.
T Consensus 411 ~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 411 LE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 32 23345566778888888888776776666553 1121 234444445556789999999999999999
Q ss_pred CCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 347 EPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 347 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
.|++..+...++.+|++. +.+.|..+-+.+
T Consensus 488 n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 488 NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999876 456666554443
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=5.9e-08 Score=93.98 Aligned_cols=216 Identities=15% Similarity=0.128 Sum_probs=172.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHH
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 234 (516)
+.+.|++.+|.-.|+..++.. +.+...|--|.-.....++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788888888888888875 45678888888888888888888888877653 36677777888899999888999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVL-----------SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 303 (516)
..++.-.... |.. ..+. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9998876532 110 0000 12222333455666777776665666889999999999999999999
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 304 ALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 304 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
|.+.|+... .+| |...||-|....+...+.++|+..|.+++++.|.-..+.+.|+-.|...|.+++|.+.|-....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999887 677 5899999999999999999999999999999999999999999999999999999998876654
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=4.4e-06 Score=81.81 Aligned_cols=193 Identities=8% Similarity=-0.058 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhc
Q 043362 188 ALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPDG--TAFVSVLSACSH 261 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~ 261 (516)
.+...+...|++++|.+.+++..+ .+...+..+...|...|++++|...+++...... .|+. ..+..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 344455555555555555554432 2334445555555555555555555555544211 1121 123344455555
Q ss_pred cCChHHHHHHHHHhHHhcCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHhcCCC-C---CHHHHHHHHHHHHhcC
Q 043362 262 AGLTDKGLEYFYGMKNKYGLQPGPEHY-T--CMVDLLGRAGQLNEALEL---IESMLVE-P---DGAVWGALLGACKIHK 331 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~~-p---~~~~~~~ll~~~~~~g 331 (516)
.|++++|..+++.........+..... + .++.-+...|..+.+.+. ....... | ..........++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 566666666665553211101111111 1 112222222321111111 1110000 1 1122223445566777
Q ss_pred CHHHHHHHHHHHhhcC-C--------CCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 332 NVELAELAFGKVIKLE-P--------MNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+.+.|..+++.+.... . .........+.++...|++++|.+.+......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777765422 1 12334456667778899999999998887654
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=1e-05 Score=79.79 Aligned_cols=347 Identities=12% Similarity=0.101 Sum_probs=193.9
Q ss_pred CCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 043362 26 SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f 105 (516)
|+-++|.+..+.-.... .-+.+.|..+.-.+....++++|...+..+++.+ +.|..++.-|.-.-++.|+++.....-
T Consensus 55 g~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44455555544443322 2233344444444444455666666666655554 444555555555555555555444433
Q ss_pred cccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH------HHHhcCChHHHHHHHHHHH
Q 043362 106 DQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLS------SCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 106 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~a~~~~~~~~ 175 (516)
.+..+. .-..|..++.++.-.|++..|..+.++..+.. -.|+...+..... .....|.++.|.+.+....
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 333222 23678888888888888888888888887653 2455555543322 2345566666666554443
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHH-HHHHHHhcCCHHHHH-HHHH-------------
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK--TVVSWTA-IIGGYGIHGHGEVAV-QLFD------------- 238 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~-li~~~~~~g~~~~A~-~~~~------------- 238 (516)
.. +......-..-.+.+.+.+++++|..++..+..+ |..-|.- +..++.+-.+.-+++ .+|.
T Consensus 213 ~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 213 KQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred hH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 32 2222333455667778888888888888887654 3333332 223332222222222 3333
Q ss_pred ---------------------HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-----C------------
Q 043362 239 ---------------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY-----G------------ 280 (516)
Q Consensus 239 ---------------------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~------------ 280 (516)
.+.+.|+++ +|..+.+.|-.-...+ +++++...+ |
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCccccccc
Confidence 333334332 2222222222211111 222211110 1
Q ss_pred CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 281 LQPGPEH--YTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 281 ~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
-+|.... +-.++..|-+.|+++.|...++... ..|+ +..|.+=.+.+...|++++|...++++.+++..|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 1344443 4456788889999999999999886 4465 4455555577888899999999999999988655433334
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
-+.-..++++.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 45556788899999998888776553
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=3.1e-07 Score=85.85 Aligned_cols=245 Identities=15% Similarity=0.121 Sum_probs=156.6
Q ss_pred cCCHHHHHHHHcccCCCC----chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKG----LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
.|++..+..-.+ ....+ .....-+.++|...|+++.++ .++.... .|.......+...+....+-+.+..-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 566666665443 11111 234555667777777766544 3333322 45555544444444333333344333
Q ss_pred HHHHHHcCCC-CchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 171 EQQIQANGFG-SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 171 ~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
+......... .+..+......+|...|++++|.+++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD- 163 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED- 163 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-
Confidence 3333222222 23344444456677889999999988876 46667777889999999999999999999874 334
Q ss_pred HHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHH
Q 043362 250 TAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGAL 323 (516)
Q Consensus 250 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l 323 (516)
.+...+..++.. ...+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++.. ..| +..+...+
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 444555554433 3468999999999875 446788889999999999999999999998876 344 46677778
Q ss_pred HHHHHhcCCH-HHHHHHHHHHhhcCCCCc
Q 043362 324 LGACKIHKNV-ELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 324 l~~~~~~g~~-~~A~~~~~~~~~~~p~~~ 351 (516)
+......|+. +.+.+.+.++....|+.+
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8777777877 778889999998888765
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=7.8e-06 Score=82.14 Aligned_cols=365 Identities=14% Similarity=0.068 Sum_probs=225.1
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC-ChhHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL-DFSVGNCLM 89 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll 89 (516)
|...|..|--+....|+++.+.+.|++....- .-....|..+-..+...|.-..|..+++........| |+.++-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 55667777777788888888888888766432 2334556666666777777777777777655433223 333333333
Q ss_pred HHHHH-cCCHHHHHHHHcccCC--------CCchHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCC-CCCCH
Q 043362 90 TMYVK-CGSVDYGRKLFDQVPE--------KGLITWNAMISGYAQN-----------GLATHVLELYREMKSLG-VCPDA 148 (516)
Q Consensus 90 ~~~~~-~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~p~~ 148 (516)
..|.+ .|.++++..+-.+... .....|-.+.-+|... ....++++.+++..+.+ -.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 33332 2444444333332221 1123444444444321 12345666677666543 23333
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----------------
Q 043362 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---------------- 212 (516)
Q Consensus 149 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------------- 212 (516)
..|. .--++-.++++.|.+..++..+.+-..+...|.-|.-.+.-.+++.+|+.+.+...+.
T Consensus 481 if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3332 3335556777788887777777655667777777777777777777777776543210
Q ss_pred -------CHhHHHHHHHHHH------h-----------------cCCHHHHHHHHHHHH--------HcC---------C
Q 043362 213 -------TVVSWTAIIGGYG------I-----------------HGHGEVAVQLFDEML--------KSG---------I 245 (516)
Q Consensus 213 -------~~~~~~~li~~~~------~-----------------~g~~~~A~~~~~~m~--------~~g---------~ 245 (516)
-+.+...++..+- + .++..+|.+..+++. ..| +
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 0011111111111 0 011111211111110 001 1
Q ss_pred C--CCH------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 043362 246 R--PDG------TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD 316 (516)
Q Consensus 246 ~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 316 (516)
. |+. ..+......+...+..++|...+.+.... ..-....|......+...|+.++|.+.|.... ..|+
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 1 121 12334455677788888888887777642 23356677777888899999999999998876 6775
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 317 -GAVWGALLGACKIHKNVELAEL--AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 317 -~~~~~~ll~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+.+..++...+.+.|+...|.. ++..+.+++|.++.+|..++.++.+.|+.++|...|....+.
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7888899999999999888888 999999999999999999999999999999999999988754
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.1e-05 Score=73.80 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=77.9
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-CCHHHHHHHH-HHHHhcCCHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV-E-PDGAVWGALL-GACKIHKNVELAE 337 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~~~~~~ll-~~~~~~g~~~~A~ 337 (516)
-...+++.+.+++.+.. |=..-|...+ .+.++++..|.+.+|+++|-++.. + .|..+|.+++ ..|.+.+.++.|.
T Consensus 371 L~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 33456666666666653 2222333333 467888899999999999988761 1 3567776665 5577888888876
Q ss_pred HHHHHHhhcC-CCC-ccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 338 LAFGKVIKLE-PMN-TGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 338 ~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
.++ ++.+ |.+ .......++-|.+++.+--|.+.|+.+...+.
T Consensus 449 ~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 449 DMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 554 4444 322 22344667889999999999999998876443
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=1.4e-05 Score=78.24 Aligned_cols=197 Identities=13% Similarity=-0.036 Sum_probs=112.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCCChhhHHH-HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH--
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLC-LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC-- 87 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 87 (516)
+..|..+...+...|+.+.+...+....+.. ..++...... ....+...|+++.|...++.+++.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4566667777777788888776666655432 1122211111 1223456688888888888887764 444444442
Q ss_pred -HHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043362 88 -LMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163 (516)
Q Consensus 88 -ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 163 (516)
+.......|..+.+.+.++.....+. ..+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234555556665554322222 233344556677777777777777777653 3344555666666777777
Q ss_pred hHHHHHHHHHHHHcCC-CCch--HHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 164 HSVGLEVEQQIQANGF-GSNP--FLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 164 ~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+++|...++...+... .++. ..|..+...+...|++++|.++|++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777665421 1221 233455666666677766666666643
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=6.9e-06 Score=91.04 Aligned_cols=324 Identities=11% Similarity=-0.027 Sum_probs=205.4
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC----CCC------c--hHHHHHHHHHHH
Q 043362 58 VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP----EKG------L--ITWNAMISGYAQ 125 (516)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~~~------~--~~~~~li~~~~~ 125 (516)
...|++..+..++..+.......+..........+...|++++|...++... ..+ . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3456666655555443111112223333445556677899999888886542 111 1 122233455678
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCchHHHHHHHHHHHhC
Q 043362 126 NGLATHVLELYREMKSLGVCPDA----VTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GF-GSNPFLNNALINMYARC 196 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~ 196 (516)
.|++++|...+++....--..+. .+.+.+...+...|++++|...+.+.... |. .........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 99999999999987763111121 23445556677899999999999888753 21 11123456677788899
Q ss_pred CCHHHHHHHHhcCCC-------C----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhc
Q 043362 197 GNLKKARAIFDGMPR-------K----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--GIRPD--GTAFVSVLSACSH 261 (516)
Q Consensus 197 g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~ 261 (516)
|++++|.+.+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999988776431 1 1223445556677789999999999887552 11122 2344455667788
Q ss_pred cCChHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhcCCC--CCH----HHHHHHHHHHHhc
Q 043362 262 AGLTDKGLEYFYGMKNKYGLQPGPEHY-----TCMVDLLGRAGQLNEALELIESMLVE--PDG----AVWGALLGACKIH 330 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 330 (516)
.|+.++|...+........-......+ ...+..+...|+.+.|...+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875421111111111 11224455689999999998776411 111 1134566778889
Q ss_pred CCHHHHHHHHHHHhhcC------CCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 331 KNVELAELAFGKVIKLE------PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
|+.++|...++++.+.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999987642 1223456778889999999999999999887654
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.81 E-value=5.6e-05 Score=74.60 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC---------CC
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD---GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL---------QP 283 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---------~p 283 (516)
.|-.+...|-.+|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|.++.+........ .|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 466666666666777777777766655321110 122333333333455566666665555421000 00
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CC
Q 043362 284 -------GPEHYTCMVDLLGRAGQLNEALELIESML----VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLE--PM 349 (516)
Q Consensus 284 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~ 349 (516)
+...|..+++.....|-++....+++++. ..|. +..|.. .+-.|.-++++.+++++-+.+. |.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm---fLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM---FLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 12345555555556666666666666664 2232 112222 2234455677777777766655 22
Q ss_pred CccchHHHhhHHHH---cCChhHHHHHHHHHHh
Q 043362 350 NTGYYVLLSNIYSE---ARNLDGIMRVRMMMRE 379 (516)
Q Consensus 350 ~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 379 (516)
-...|+..+.-+.+ ....+.|..+|+...+
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 22333333332222 2356777777777766
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.7e-06 Score=82.09 Aligned_cols=216 Identities=12% Similarity=0.070 Sum_probs=145.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh----------HHHHHH
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV----------SWTAII 221 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~----------~~~~li 221 (516)
..+.++..+..+++.+.+-+...+... .++.-++....+|...|.+.++...-+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345566666667777777777777754 46666677777788777777766655543322111 122234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHHhcCC
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE-HYTCMVDLLGRAGQ 300 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 300 (516)
.+|.+.++++.|+..|.+.......||.. .+....+++........ -+.|... --..=...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 45666677778888887766544444322 12223344443333332 2233321 11122556778899
Q ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 301 LNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 301 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
+..|...+.++. ..| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 456 588899999999999999999999999999999999899988889999999999999998876
Q ss_pred hCC
Q 043362 379 ERR 381 (516)
Q Consensus 379 ~~~ 381 (516)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 643
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=1.8e-07 Score=87.35 Aligned_cols=244 Identities=11% Similarity=0.014 Sum_probs=163.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHH
Q 043362 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200 (516)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 200 (516)
+-+.-.|++..++.-.+ .....-..+..+...+.+++...|..+.+. ..+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34555788888886555 222211223345566778888888876543 3443433 566666665555444445666
Q ss_pred HHHHHHhcCC-CC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 043362 201 KARAIFDGMP-RK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275 (516)
Q Consensus 201 ~A~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 275 (516)
.+..-++... ++ +....-.....+...|++++|++++.+- .+.......+..+...++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665433 22 2222222234566789999999988652 35667777889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 276 KNKYGLQPGPEHYTCMVDL----LGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 276 ~~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.+ +..|. +...|..+ +.-.+.+.+|..+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|+
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 73 44443 33334433 333447999999999987 3467888999999999999999999999999999999
Q ss_pred CccchHHHhhHHHHcCCh-hHHHHHHHHHHh
Q 043362 350 NTGYYVLLSNIYSEARNL-DGIMRVRMMMRE 379 (516)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 379 (516)
++.+...++.+....|+. +.+.+++..+++
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999999998 667788888765
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=2.9e-06 Score=73.25 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 194 (516)
+...|.-+|.+.|++..|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|++.++.. +.+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45566777888888888888888877752 2234577777777778888888888888877764 345667777777777
Q ss_pred hCCCHHHHHHHHhcCC-CC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 195 RCGNLKKARAIFDGMP-RK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
..|.+++|...|++.. .| -..+|..+.-+..+.|+++.|.+.|++..+.. +-...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 7777777777777654 23 23466666666667777777777777766642 222345555666666666666666
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043362 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 307 (516)
.+++..... ..++..+.-..|..-.+.|+-+.|.+.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 666666543 225555555555555555555554443
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.79 E-value=0.00011 Score=72.53 Aligned_cols=215 Identities=15% Similarity=0.152 Sum_probs=138.7
Q ss_pred CChHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-------hHHHHHHHHHHhcCC
Q 043362 162 GAHSVGLEVEQQIQANG-----FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV-------VSWTAIIGGYGIHGH 229 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~~~g~ 229 (516)
|+..+-...+.++++.= ...-...|..+.+.|-..|+++.|+.+|++..+-+- ..|-.-...=.++.+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 34455555566655521 111234678899999999999999999999875432 345555555567888
Q ss_pred HHHHHHHHHHHHHcCCC-----------CC------HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 043362 230 GEVAVQLFDEMLKSGIR-----------PD------GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~-----------p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 292 (516)
++.|+++.++.....-. +. ...|...+..--..|-++....+++++.+-.-..| ...-...
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyA 518 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYA 518 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHH
Confidence 99999988876542111 11 12233344444556788888889998886522233 3323333
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CC-CC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCc-c-chHHHhhHHHH
Q 043362 293 DLLGRAGQLNEALELIESML--VE-PD-GAVWGALLGACKI---HKNVELAELAFGKVIKLEPMNT-G-YYVLLSNIYSE 363 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~--~~-p~-~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~-~-~~~~l~~~~~~ 363 (516)
..+....-++++.+++++-. ++ |+ -..|++.+.-+.+ ...++.|..+|+++++.-|+.. . .|...+..-.+
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34556677999999999876 33 55 5678887766543 2478999999999999766432 2 23333333445
Q ss_pred cCChhHHHHHHHHHH
Q 043362 364 ARNLDGIMRVRMMMR 378 (516)
Q Consensus 364 ~g~~~~a~~~~~~m~ 378 (516)
-|....|..++++..
T Consensus 599 ~GLar~amsiyerat 613 (835)
T KOG2047|consen 599 HGLARHAMSIYERAT 613 (835)
T ss_pred hhHHHHHHHHHHHHH
Confidence 678888888888754
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=0.00021 Score=72.16 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=110.4
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHH
Q 043362 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV-TFV 152 (516)
Q Consensus 77 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 152 (516)
.+.-|..+|..|.-+..++|+++.+.+.|++...-. ...|+.+...|...|.-..|+.+.+.-....-.|+.. .+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 355678888888888888999999888888765432 3678888888888888888888887765432224333 333
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHHc--CC--CCchHHHHHHHHHHHhC----C-------CHHHHHHHHhcCC-----C
Q 043362 153 GVLSSCA-HLGAHSVGLEVEQQIQAN--GF--GSNPFLNNALINMYARC----G-------NLKKARAIFDGMP-----R 211 (516)
Q Consensus 153 ~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~----g-------~~~~A~~~~~~m~-----~ 211 (516)
..-..|. +.+..+++..+-.+++.. +. ......|-.+.-+|... . ...++.+.+++.. +
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2333333 455666666665555541 10 11123333333333321 1 1223344444332 1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|++.-|- .--|+..++.+.|++..++..+.+-.-+...|..|.-.++..+++.+|+.+.+.....
T Consensus 478 p~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 478 PLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred chHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 2222222 2234455566666666666666544445555555555555555666665555555444
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=2.3e-05 Score=71.59 Aligned_cols=304 Identities=17% Similarity=0.143 Sum_probs=148.0
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHH---HHHhhcCCCchHHHHHHHHHHHhCCCCChhH-HHHHHHHHHH
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCL---LPICVDPGYLWLGMCCHCICVKFGLDLDFSV-GNCLMTMYVK 94 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~ll~~~~~ 94 (516)
-..+..+|++..|+.-|....+- |+..|.++ ...|...|+-..|..=+..+++. +||-.. .-.-...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34444555556666665555432 22222222 23445555555555555555544 344321 1112234455
Q ss_pred cCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 174 (516)
.|.+++|..=|+.+.+.+.. +|...+|.+-+.... ........+..+...|+...++.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 66666666666555433220 000011100000000 0011222334445566777777777777
Q ss_pred HHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043362 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDG---MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251 (516)
Q Consensus 175 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 251 (516)
++.. +.|...+..-..+|...|++..|+.=++. +...+....--+-..+-..|+.+.++...++-.+ +.||...
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 6653 45666666777777777777777554433 3344555555555666677777777777776665 4555432
Q ss_pred HHH----H---------HHHHhccCChHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 043362 252 FVS----V---------LSACSHAGLTDKGLEYFYGMKNKYGLQPG-----PEHYTCMVDLLGRAGQLNEALELIESML- 312 (516)
Q Consensus 252 ~~~----l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~- 312 (516)
... | +......+.+.++.+-.+...+. .|. ...+..+-..|...|++-+|++.-.+..
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 111 0 01122334444444444444432 222 1122333344445566666665555443
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 313 VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 313 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
..|| +.++---..+|.....++.|+.-|+++.+.+|++.
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 3343 45555555556656666666666666666666554
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.68 E-value=0.00012 Score=72.48 Aligned_cols=362 Identities=13% Similarity=0.085 Sum_probs=242.9
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
-..-|-.++..|- .+++...+.+.+..+.. .+-...|.....-.+...|+.++|....+..++.. ..+.+.|..+.-
T Consensus 7 E~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl 83 (700)
T KOG1156|consen 7 ENALFRRALKCYE-TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHH
Confidence 3344555666553 56788888888887763 23334455444444566789999988877776654 445567887777
Q ss_pred HHHHcCCHHHHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHH
Q 043362 91 MYVKCGSVDYGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 166 (516)
.+-...++++|.+.|..... .|...|-.+.-.-++.|+++.....-.+..+. .| ....|.....+..-.|+...
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 77778899999999987643 34677877777778889999998888888774 34 44577888888888999999
Q ss_pred HHHHHHHHHHcC-CCCchHHHHHHH------HHHHhCCCHHHHHHHHhcCCCC--C-HhHHHHHHHHHHhcCCHHHHHHH
Q 043362 167 GLEVEQQIQANG-FGSNPFLNNALI------NMYARCGNLKKARAIFDGMPRK--T-VVSWTAIIGGYGIHGHGEVAVQL 236 (516)
Q Consensus 167 a~~~~~~~~~~g-~~~~~~~~~~li------~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~ 236 (516)
|..+.+...+.. -.|+...+.-.. ....+.|..++|.+.+...... | ...-.+....+.+.++.++|..+
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 999999988864 345555553322 2346778899998888776543 2 22334456678899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHh-c-cCChHHHHHHHHHhHHhc---------------------------------CC
Q 043362 237 FDEMLKSGIRPDGTAFVSVLSACS-H-AGLTDKGLEYFYGMKNKY---------------------------------GL 281 (516)
Q Consensus 237 ~~~m~~~g~~p~~~t~~~ll~a~~-~-~g~~~~a~~~~~~~~~~~---------------------------------~~ 281 (516)
+..+... .||..-|...+..+. + .+..+....+|....+.+ |+
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9999985 577776665554443 2 222222224444443321 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHhcC-------------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHH
Q 043362 282 QPGPEHYTCMVDLLGRAGQLNE----ALELIESML-------------VEPDGAVWGA--LLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 282 ~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~-------------~~p~~~~~~~--ll~~~~~~g~~~~A~~~~~~ 342 (516)
++ ++..+...|-.-...+- +..+...+. ..|....|.. +...+-..|+++.|+...+.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 21 22222222221111111 111111111 1467666655 55668899999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
+++.-|.-+..|..-+.++.++|..++|..++++..+.+.
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9998887777888888999999999999999999987654
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=2e-06 Score=76.82 Aligned_cols=303 Identities=11% Similarity=0.047 Sum_probs=170.9
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc--hHHH-HHHHHHHHc
Q 043362 50 MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL--ITWN-AMISGYAQN 126 (516)
Q Consensus 50 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~--~~~~-~li~~~~~~ 126 (516)
+.+++.-+.+..++..+.+++..-.+.. +.+....+.|...|....++..|...++++...-+ .-|. --....-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444455556666666665555443 33444555666666666667777766666643221 1111 012344556
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 043362 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSS--CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 204 (516)
+.+.+|+++...|... |+...-..-+.+ ..+.+++..++.+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6777777777766542 222221111222 234556666666666554322 34444445555667777887777
Q ss_pred HHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 205 IFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 205 ~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
-|+...+- ....||..+.. .+.|+++.|+++..++.+.|++..+.. + .|..-++..+ +.+ |
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiDv-rsv----g 230 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGIDV-RSV----G 230 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCch-hcc----c
Confidence 77766532 34566654444 356778888888888887776532210 0 0111111000 000 0
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 281 LQPG-------PEHYTCMVDLLGRAGQLNEALELIESML----VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 281 ~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.|- ...+|.-...+.+.|+++.|.+.+..|| .+.|++|...+.-. -..+++.++.+-+.-++++.|-
T Consensus 231 -Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 231 -NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred -chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 011 1122333344567899999999999998 23466666554322 2345566666777777888887
Q ss_pred CccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 350 NTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.+.++..++-.|++..-++-|..++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 778999999999999988888887754
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=2.9e-06 Score=90.05 Aligned_cols=200 Identities=16% Similarity=0.166 Sum_probs=166.8
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRK--------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 251 (516)
|.....|-..|......+++++|++++++.... -.-.|.++++.-...|.-+...++|+++.+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 445678888899999999999999999887532 23578888888888888888999999988742 22356
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHHHHH
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD---GAVWGALLGAC 327 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~ 327 (516)
|..|+..|.+.+.+++|.++++.|.++++ ....+|..+++.+.+..+-+.|..++++.. .-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998766 577899999999999999999999998875 2232 44445555666
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
.++||.+.+..+|+..+.-.|.....|..++.+-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999887764
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=5.3e-05 Score=67.94 Aligned_cols=254 Identities=11% Similarity=0.061 Sum_probs=147.7
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHH-HHHHHH
Q 043362 14 CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGN-CLMTMY 92 (516)
Q Consensus 14 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~ll~~~ 92 (516)
-+++.+.-+.+..+++.|++++..-.+.. +.+...++.+...|-...++..|-..++++-.. .|...-|. --...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 35666667778888899999888877763 336666777777777777888888777776554 23222211 111223
Q ss_pred HHcCCHHHHHHHHcccCC-----------------------------------CCchHHHHHHHHHHHcCChhHHHHHHH
Q 043362 93 VKCGSVDYGRKLFDQVPE-----------------------------------KGLITWNAMISGYAQNGLATHVLELYR 137 (516)
Q Consensus 93 ~~~g~~~~A~~~f~~~~~-----------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 137 (516)
.+.+.+.+|+++...|.. .+..+.+.......+.|+++.|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 344455555555444432 222333333334456778888888887
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------Cch--------HHHHHHHH----
Q 043362 138 EMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-------------SNP--------FLNNALIN---- 191 (516)
Q Consensus 138 ~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-------------~~~--------~~~~~li~---- 191 (516)
...+- |..| ...|+..+. ..+.++.+.|.+...+++++|+. +|+ -.-++++.
T Consensus 169 aAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 77664 4433 455655543 34567778888887777776542 111 11123333
Q ss_pred ---HHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 043362 192 ---MYARCGNLKKARAIFDGMPRK-----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263 (516)
Q Consensus 192 ---~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 263 (516)
.+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+.+.+ +....||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhH
Confidence 345667777787777777744 555544432211 2344555555555555543 234567777777777777
Q ss_pred ChHHHHHHHHH
Q 043362 264 LTDKGLEYFYG 274 (516)
Q Consensus 264 ~~~~a~~~~~~ 274 (516)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 77777766643
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=4.5e-06 Score=76.52 Aligned_cols=181 Identities=11% Similarity=-0.010 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMPR--K-TV---VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG--TAFV 253 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 253 (516)
....+-.+...|.+.|++++|...|+++.. | +. .+|..+..+|.+.|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344555666666777777777777765542 1 11 34555666677777777777777776653211111 1333
Q ss_pred HHHHHHhcc--------CChHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH
Q 043362 254 SVLSACSHA--------GLTDKGLEYFYGMKNKYGLQPGP-EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324 (516)
Q Consensus 254 ~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 324 (516)
.+..++... |+.++|.+.++.+.+. .|+. ..+..+.... ...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 334444433 5566666666666643 2322 1221111110 000000 00112445
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMN---TGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..+...|++++|...++++++..|++ +..+..++.+|.+.|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66888999999999999999987654 467889999999999999999999888654
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=6e-08 Score=58.09 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=28.3
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 77 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=7.7e-05 Score=82.80 Aligned_cols=326 Identities=9% Similarity=-0.041 Sum_probs=205.0
Q ss_pred HhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCC------CCC--hhHHHHHHHHHHH
Q 043362 23 VLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL------DLD--FSVGNCLMTMYVK 94 (516)
Q Consensus 23 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~ll~~~~~ 94 (516)
...|++..+..++..+.......+..........+...++++++...+......-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666655553211111222223333445567899999988887755311 111 1222334455678
Q ss_pred cCCHHHHHHHHcccCC----CCc----hHHHHHHHHHHHcCChhHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhc
Q 043362 95 CGSVDYGRKLFDQVPE----KGL----ITWNAMISGYAQNGLATHVLELYREMKSLG--V-CPD--AVTFVGVLSSCAHL 161 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~t~~~ll~~~~~~ 161 (516)
.|++++|...+++..+ .+. .+++.+...+...|++++|...+.+..... . .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 9999999998877532 221 345667777888999999999998876421 1 111 23445566678889
Q ss_pred CChHHHHHHHHHHHHc----CCCC---chHHHHHHHHHHHhCCCHHHHHHHHhcCCC------C--CHhHHHHHHHHHHh
Q 043362 162 GAHSVGLEVEQQIQAN----GFGS---NPFLNNALINMYARCGNLKKARAIFDGMPR------K--TVVSWTAIIGGYGI 226 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~--~~~~~~~li~~~~~ 226 (516)
|+++.|...+++.... +... ....+..+...+...|++++|...+++... + ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999998887652 2211 233455666777888999999988876532 1 12344456667888
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHh
Q 043362 227 HGHGEVAVQLFDEMLKSGIR-PDGTAF-----VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGR 297 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~ 297 (516)
.|++++|.+.+.+....... .....+ ...+..+...|+.+.|..++...... ..... ...+..+..++..
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHH
Confidence 99999999999887542111 111111 11223445588999999988765531 11111 1113456778889
Q ss_pred cCCHHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 298 AGQLNEALELIESML-------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 298 ~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.|+.++|...+++.. ..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 999999999888764 1111 345556667789999999999999999987643
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.61 E-value=2.1e-05 Score=78.45 Aligned_cols=189 Identities=15% Similarity=0.211 Sum_probs=95.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043362 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236 (516)
Q Consensus 157 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 236 (516)
+......+..|..+++.+..... -...|.-+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|+++.|.++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 33444555566666655554431 12234455566666666666666665432 234445556666666666655
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC
Q 043362 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316 (516)
Q Consensus 237 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 316 (516)
-.+.. |.......|.+-..-.-..|++.+|.+++-.+. .|+ .-|.+|-+.|..++..++.++-. |+
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h--~d 879 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHH--GD 879 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhC--hh
Confidence 54432 223333444444444555566666665554332 233 23555666666666666665532 33
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 317 --GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 317 --~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
..|...+..-+-..|++..|+.-|-++- -|..-.++|...+.|++|.++-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHH
Confidence 2333444445555566666655544432 2334445555555555555543
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=8.3e-05 Score=76.91 Aligned_cols=336 Identities=14% Similarity=0.121 Sum_probs=196.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-ChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC-----------
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCICVKFG----------- 77 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----------- 77 (516)
.|...-+.-+.++...+-+.+-++++++..-.+-.. ....+..++-.-+-.-+.....+..+++-..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 344444556788889999999999999887543111 11112122111111112222222222211111
Q ss_pred ------------CCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 043362 78 ------------LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145 (516)
Q Consensus 78 ------------~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 145 (516)
+..+....+.|+. .-+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 1122222222222 12344444444444333 357999999999999999999877543
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--------------
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-------------- 211 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------------- 211 (516)
-|+..|..++..+.+.|.+++-...+....+..-+|.+ -+.|+-+|++.+++.+-+++...-..
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence 36678999999999999999999999888877655544 46789999999999887776543211
Q ss_pred ---------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC-
Q 043362 212 ---------KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL- 281 (516)
Q Consensus 212 ---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~- 281 (516)
.++.-|..+...+...|++..|.+.-++. .+..||-.+-.+|...+.+..|. |. |+
T Consensus 1209 ~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iC---GL~ 1274 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----IC---GLN 1274 (1666)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hc---Cce
Confidence 03344556666666666666666655542 24567777777777766655442 21 32
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 282 -QPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 282 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
.....-..-|+..|...|.+++-..+++... .+.....|+-|.-.|.+.+ +++..+.++-.-.. ...--++
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKvi 1348 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVI 1348 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHH
Confidence 2244556677888888888888888887665 2234455666665565543 34333333322211 1112456
Q ss_pred hHHHHcCChhHHHHHHHHHH
Q 043362 359 NIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~m~ 378 (516)
.++..+.-|.+..=++..-.
T Consensus 1349 RA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1349 RAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 77777777777766655443
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=8e-08 Score=57.53 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 178 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=2.1e-05 Score=83.79 Aligned_cols=227 Identities=11% Similarity=0.085 Sum_probs=175.1
Q ss_pred CCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh-CC---CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC--chHHH
Q 043362 44 EINSVTMLCLLPICVDPGYLWLGMCCHCICVKF-GL---DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWN 117 (516)
Q Consensus 44 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~---~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~--~~~~~ 117 (516)
+-....|..-+.-....+++++|+++.+++++. ++ ..-..+|.+++++-..-|.-+...++|++..+-. ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334556777788888999999999999988765 22 1234578899998888898899999999987653 36788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhC
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNALINMYARC 196 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~ 196 (516)
.|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+...-+.|+.++.++++.=.. ..+....-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999875 3445667888888888888889999999998885211 2355666777888899
Q ss_pred CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChHHHHHH
Q 043362 197 GNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG--TAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 197 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.|..-...|+-+.++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999998763 35678999999999999999999999999998887753 3444555544445554443333
No 102
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00031 Score=68.94 Aligned_cols=311 Identities=13% Similarity=0.086 Sum_probs=172.9
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHH--HHHHH--HHcC
Q 043362 52 CLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA--MISGY--AQNG 127 (516)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~--~~~g 127 (516)
+=++-+...+++++|.+.-..++..+ +.|...+..=+-+..+.+++++|+++.+.-.... +++. +=.+| .+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcc
Confidence 33455677899999999999999887 6667777777778899999999997766544222 2222 23444 5789
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hH---------------------
Q 043362 128 LATHVLELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN-PF--------------------- 184 (516)
Q Consensus 128 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~--------------------- 184 (516)
..++|+..++ |..++. .+...-...|.+.+++++|..+|+.+.+.+.+.- ..
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 9999999887 334433 3666667789999999999999999977653211 11
Q ss_pred -----HHHH---HHHHHHhCCCHHHHHHHHhcC--------CCCC-----H-----hHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 185 -----LNNA---LINMYARCGNLKKARAIFDGM--------PRKT-----V-----VSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 185 -----~~~~---li~~y~~~g~~~~A~~~~~~m--------~~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
+|.. ....+...|++.+|+++++.. .+.| . ..---|.-.+...|+-++|..++.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 1111 122234455555555555544 1100 0 011122333445555556666555
Q ss_pred HHHHcCCCCCHHHH----HHHHHHHhccCChHH--HHHHHHHhHHhc------CC--CCCHHHH--HHHHHHHHhcCCHH
Q 043362 239 EMLKSGIRPDGTAF----VSVLSACSHAGLTDK--GLEYFYGMKNKY------GL--QPGPEHY--TCMVDLLGRAGQLN 302 (516)
Q Consensus 239 ~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~--a~~~~~~~~~~~------~~--~p~~~~~--~~li~~~~~~g~~~ 302 (516)
...... ++|.... |.|+ +...-.++-. ++..++...... .+ .--...+ ++++.+| .+..+
T Consensus 249 ~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 249 DIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 555542 2332111 1111 1111111111 111111110000 00 0000011 1222222 34556
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHhhcCCCC-ccchHHHhhHHHHcCChhHHHHHHH
Q 043362 303 EALELIESML-VEPDGAVWGALL-GACKIH-KNVELAELAFGKVIKLEPMN-TGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 303 ~A~~~~~~m~-~~p~~~~~~~ll-~~~~~~-g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
.+.++-...+ ..|.. .+.+++ .+.... .....+..++....+..|.+ ......++......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 325 QVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666666665 22443 334444 333222 24777888888888888876 3455567778899999999999998
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=9.8e-06 Score=81.76 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=121.7
Q ss_pred CcccHHHHH--HHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh--------C-CC
Q 043362 11 LTVCYNALI--SGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF--------G-LD 79 (516)
Q Consensus 11 ~~~~~n~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g-~~ 79 (516)
|.+|--+|+ +.|+.-|+.+.|.+-.+..+.. ..|..+.+.|.+..+++-|+-.+..|... . -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 344444444 2455567777776666555432 45777777777777776666655544221 1 11
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043362 80 LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159 (516)
Q Consensus 80 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 159 (516)
++ ..-....-.-...|.+++|+.+|.+-+. |..|-..|...|.+++|+++-+.=-...+ ..||..-..-+.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLE 869 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHH
Confidence 21 2222233334456777777777776544 33444556667777777766543221111 234444444444
Q ss_pred hcCChHHHHHHHHHHHHcC-------------------CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH
Q 043362 160 HLGAHSVGLEVEQQIQANG-------------------FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~~~g-------------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 220 (516)
..++.+.|.+.|++..... -..|...|.--....-..|+++.|+.+|.... -|-++
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~ 944 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSM 944 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhh
Confidence 5556666666554321110 01222333333333444566666666665433 24444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
+...|-.|+.++|-.+-++ .-|......|..-|...|++.+|..+|-+..
T Consensus 945 VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5555555555555554443 1233444445555666666666665555443
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=1.1e-05 Score=71.33 Aligned_cols=118 Identities=9% Similarity=0.070 Sum_probs=89.6
Q ss_pred cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCC--HHHH
Q 043362 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA-CKIHKN--VELA 336 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~g~--~~~A 336 (516)
.++.+++...+....+. -+.+...|..|...|...|++++|...+++.. ..| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55666666666666643 24467788888888888888888888888775 445 46777777765 356666 5888
Q ss_pred HHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888887643
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=5.8e-06 Score=80.50 Aligned_cols=215 Identities=13% Similarity=0.096 Sum_probs=140.3
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHH
Q 043362 58 VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLE 134 (516)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 134 (516)
.+.|++.+|.-.|+..++.. +.+...|--|....+..++-..|...+.+..+.| ..+.-+|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777777777777765 5566777777777777777777777777665543 3566666677777777777877
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 043362 135 LYREMKSLGVC--------PDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLNNALINMYARCGNLKKARAI 205 (516)
Q Consensus 135 ~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 205 (516)
.+...+....+ ++..+-.. ........+....++|-.+ ...+..+|+.++..|.-.|--.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77776543210 00000000 0111111233333444443 3345456777788888888888888888888
Q ss_pred HhcCC--C-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 206 FDGMP--R-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 206 ~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
|+... + .|...||.|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|-.++.
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88765 2 3677888888888888888888888888887 56663 2344566678888888888887766553
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=3.4e-06 Score=70.40 Aligned_cols=92 Identities=11% Similarity=-0.032 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
+..+...+...|++++|...|+... ..| +...|..+..++...|++++|...|+++.+++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344455555556666555555544 233 35555555555556666666666666666666666556666666666666
Q ss_pred ChhHHHHHHHHHHh
Q 043362 366 NLDGIMRVRMMMRE 379 (516)
Q Consensus 366 ~~~~a~~~~~~m~~ 379 (516)
++++|...++...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555543
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=4.2e-06 Score=69.86 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V 313 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 313 (516)
.+|++..+ +.|+. +..+..++...|++++|...|...... -+.+...|..+..++.+.|++++|...|++.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555555 34553 445677788899999999999988742 23367788889999999999999999999876 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 314 EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 314 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
.| +...|..+..++...|+.++|+..++++++..|+++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45 68888889999999999999999999999999999888776666544
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=6.5e-06 Score=82.23 Aligned_cols=190 Identities=20% Similarity=0.206 Sum_probs=155.5
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043362 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257 (516)
Q Consensus 178 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 257 (516)
+++|-...-..+...+.+.|-...|..+|++. ..|.-.|-+|...|+..+|..+..+..+ -+||+..|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566667778999999999999999999975 5788899999999999999999998877 4889999999999
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVEL 335 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~ 335 (516)
......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-. ..| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999998876543 11122222334688888888887654 445 57888888888888999999
Q ss_pred HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
|.+.|.....++|++...|+.+..+|.+.|+..+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999988877653
No 109
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=7e-05 Score=71.08 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV-TFVGVLSSCAHLG-AHSVGLEVEQQIQANGFGSNPFLNNALINM 192 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 192 (516)
++..+-..+...+..++|+.+..++++. .|+.. +|...-.++...| .++++...++.+.+.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 4555555566666777777777776653 34333 3444434444444 3556666666665543 2233444433333
Q ss_pred HHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
+.+.|.. ..++++.+++++.+.. +-|..+|.....++.+.|+++++++.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333331 0133444444444322 123334444444444444455555555
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc----CCHHHHHHH
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDLLGRA---GQ----LNEALELIESML-VEP-DGAVWGALLGACKIH----KNVELAELA 339 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~----g~~~~A~~~ 339 (516)
.++++. . ..+...|+.....+.+. |. .+++.++..++. ..| |...|+.+...+... ++..+|...
T Consensus 166 ~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 444432 1 11233333332222222 11 234555554433 445 577788777777663 344668888
Q ss_pred HHHHhhcCCCCccchHHHhhHHHHc
Q 043362 340 FGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 340 ~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
+.++.+.+|+++.+...|+..|...
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888888888888888888763
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00051 Score=71.39 Aligned_cols=282 Identities=14% Similarity=0.097 Sum_probs=161.4
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 043362 21 GYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100 (516)
Q Consensus 21 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 100 (516)
....++-+++|..+|+..- .+......++.- -+.++.|.+.-+.. ..+.+|+.|..+-.+.|.+.+
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHH
Confidence 3444556667777766542 223333333332 23344443332221 234567777777777777777
Q ss_pred HHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 043362 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180 (516)
Q Consensus 101 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 180 (516)
|.+-|-+. .|+..|.-.+....+.|.+++-.+.+.-.++..-.|... +.++-+|++.+++.+.+++. ..
T Consensus 1123 AieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AG 1191 (1666)
T ss_pred HHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cC
Confidence 77766443 345567777777777777777777666555554444433 34566666666665554433 11
Q ss_pred Cch--------------------------HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043362 181 SNP--------------------------FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 181 ~~~--------------------------~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 234 (516)
||. .-|..|...+...|+++.|...-++. .+..+|...-.+|...+.+.-|
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA- 1268 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA- 1268 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-
Confidence 222 23444555555555555555444333 2567888888888776655433
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHH---HHHh
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALE---LIES 310 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~---~~~~ 310 (516)
+|-..++.....-+-.++..|...|-+++-+.+++... |++. ....|+-|.-.|++- +.++.++ +|-.
T Consensus 1269 ----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky-kp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1269 ----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS 1340 (1666)
T ss_pred ----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 33333344455567789999999999999999988765 5543 345677777777764 3333333 3321
Q ss_pred -cCC----C--CCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 311 -MLV----E--PDGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 311 -m~~----~--p~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
.-+ + -....|+-|.-.|.+...++.|..
T Consensus 1341 RvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1341 RVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 110 0 134567777777766666665543
No 111
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.44 E-value=3.1e-07 Score=55.82 Aligned_cols=35 Identities=43% Similarity=0.646 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCh
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINS 47 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 47 (516)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999999999999984
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00028 Score=64.91 Aligned_cols=344 Identities=8% Similarity=0.019 Sum_probs=186.6
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHH-HHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
+.-+..+.++..|+.+++--...+-+ .......-+ ..+...|++++|...+..+.... .++..++-.|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 66777888999999998876644322 222333333 34567899999999999887754 6777777778877778899
Q ss_pred HHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 98 VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 98 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
+.+|..+-...++. ...--.|.....+.|+-++-+.+-..+... ..--.++.+.......+++|++++..++..
T Consensus 107 Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987776543 222334445556677777766665555432 122334455555566789999999999875
Q ss_pred CCCCchHHHHH-HHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHcC-------
Q 043362 178 GFGSNPFLNNA-LINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGI--HGHGEVAVQLFDEMLKSG------- 244 (516)
Q Consensus 178 g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g------- 244 (516)
+ |+....|. +.-+|.|..-++-+.++++--. .....+-|.......+ +|+. |..-.+++...+
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRT--AEDEKKELADNIDQEYPFI 256 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhcccccchhH
Confidence 4 33333332 3445788888887777765432 2234555555544433 2322 221112211110
Q ss_pred -------------------CCCC-----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHH-----HHH
Q 043362 245 -------------------IRPD-----GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV-----DLL 295 (516)
Q Consensus 245 -------------------~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~ 295 (516)
+-|. +..-..|+-.|.+.+++.+|..+.+.+. ...|-......++ +-.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhc
Confidence 1111 1122344556778889999888876654 2333332222222 222
Q ss_pred HhcCCHHHHHHHHHhcC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 296 GRAGQLNEALELIESML---VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~---~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
+....+.-|.++|+-.. ..- +..--.++.+.+.-..++++.+..+..+.....+|......++.++...|++.+|.
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHH
Confidence 22223455555555432 010 11112223333333334444444444444443333344444555555555555555
Q ss_pred HHHHHH
Q 043362 372 RVRMMM 377 (516)
Q Consensus 372 ~~~~~m 377 (516)
++|-.+
T Consensus 414 elf~~i 419 (557)
T KOG3785|consen 414 ELFIRI 419 (557)
T ss_pred HHHhhh
Confidence 554433
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=2.9e-05 Score=68.54 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=112.3
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
+-.|.+.|+++......+.+..+. ..|...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777776654443322211 01223566677887787777653 556778888888999999999999
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 270 EYFYGMKNKYGLQP-GPEHYTCMVDLL-GRAGQ--LNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 270 ~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
..|++..+. .| +...+..+..++ ...|+ .++|.+++++.. ..| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988853 44 677788888764 67777 589999999887 456 5788888888899999999999999999
Q ss_pred hhcCCCCccch
Q 043362 344 IKLEPMNTGYY 354 (516)
Q Consensus 344 ~~~~p~~~~~~ 354 (516)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998765443
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=2.4e-05 Score=71.69 Aligned_cols=182 Identities=14% Similarity=0.042 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-chHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHh---HH
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-S-NPFLNNALINMYARCGNLKKARAIFDGMPRK---TVV---SW 217 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~---~~ 217 (516)
.....+......+...|+++.|...++.+.+.... + ....+..+..+|.+.|++++|...|+++.+. +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567777888899999999999999999885421 1 1246678899999999999999999988532 222 45
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHH
Q 043362 218 TAIIGGYGIH--------GHGEVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288 (516)
Q Consensus 218 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 288 (516)
..+..++.+. |+.++|.+.|+++... .|+.. ....+... ..+... -....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~-----~~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR-----LAGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH-----HHHHH
Confidence 5556666654 7789999999999875 44432 22111111 001000 00112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 289 TCMVDLLGRAGQLNEALELIESML-V---EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~-~---~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
..+...|.+.|++++|...+++.. . .| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356677889999999999888875 2 23 257888899999999999999998888776555
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.00016 Score=73.35 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=204.7
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHC-C--------CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-G--------VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
++-+.|..|.+.+++..+.+-|.-.+-.|... | -.|+ .+=.-+.-.....|.+++|+.++.+..+.+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D--- 830 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD--- 830 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 45678999999999999998888777766432 1 1232 221122222346799999999999887653
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc-hHHHHHHHHHHHcCChhHHHHHHHHH----------HHCCC-----
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQNGLATHVLELYREM----------KSLGV----- 144 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g~----- 144 (516)
.|=..|-..|.+++|.++-+.=..-.. .||..-..-+-..++.+.|++.|++- .....
T Consensus 831 ------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 831 ------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 344567778999999988654222111 46666666666678888888887753 22110
Q ss_pred ----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH
Q 043362 145 ----CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220 (516)
Q Consensus 145 ----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 220 (516)
..|...|.--..-....|.++.|..+|..... |-+++...+-.|+.++|-++-++- .|..+.-.+
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhl 973 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHL 973 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHH
Confidence 12333344444445566777777777766654 345666667789999998887754 366677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---------------ChHHHHHHHHHhHHhcCCCCCH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG---------------LTDKGLEYFYGMKNKYGLQPGP 285 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------------~~~~a~~~~~~~~~~~~~~p~~ 285 (516)
..-|-..|++.+|...|.+.+ +|...|..|-..+ +.-.|-.+|++.- .
T Consensus 974 aR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~---- 1036 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG----G---- 1036 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----h----
Confidence 899999999999999998765 3444444443332 2223333443321 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-----------CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-----------VE--PDGAVWGALLGACKIHKNVELAELAFGKVIK------- 345 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------- 345 (516)
-...-+..|-++|.+.+|+++--+-. .. .|+...+--..-+..+.++++|..++-...+
T Consensus 1037 -~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1037 -YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred -hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234566888888888887632211 12 3566666666667777888888766554433
Q ss_pred ---------------cCC------CC---ccchHHHhhHHHHcCChhHHHHHH
Q 043362 346 ---------------LEP------MN---TGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 346 ---------------~~p------~~---~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
+-| +. ......++..|.++|.+..|-+-|
T Consensus 1116 C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1116 CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 112 11 124567888899999887766544
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=9.5e-05 Score=76.53 Aligned_cols=81 Identities=20% Similarity=0.125 Sum_probs=45.7
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHH
Q 043362 296 GRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
...|.+.-|...|-+.. ..| ...+|..+...+....|++-|...|.+...++|.+...|...+.+-...|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444443322 222 3555555555556666666666666666666666666666666666666666666666
Q ss_pred HHH
Q 043362 374 RMM 376 (516)
Q Consensus 374 ~~~ 376 (516)
|..
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 554
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=3.4e-05 Score=80.68 Aligned_cols=182 Identities=12% Similarity=0.054 Sum_probs=132.9
Q ss_pred HHHHhcCChHHH-HHHHHHHHHcCCCCchHHHHHHHHHHHhC----CCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCH
Q 043362 156 SSCAHLGAHSVG-LEVEQQIQANGFGSNPFLNNALINMYARC----GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230 (516)
Q Consensus 156 ~~~~~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 230 (516)
.+.+..|..+++ .+++.++.+ ++...+.. ..+.++..+.+.-+ .++..+-.|.....+.|.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~~~g~~ 102 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARALEAAHRS 102 (694)
T ss_pred HHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCc
Confidence 445566665554 566665543 22222222 22333444444333 2577788888889999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
++|+.+++...+ ..||. .....+...+.+.+.+++|....++.... .| +......+..++.+.|++++|..+|
T Consensus 103 ~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 103 DEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred HHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999988 46664 56677888999999999999999999853 45 5667778888899999999999999
Q ss_pred HhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 309 ESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 309 ~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
++.. ..|+ ..+|..+..++...|+.++|...|+++.+...+....|.
T Consensus 178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9987 4454 788888999999999999999999999887654444443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=5e-05 Score=76.14 Aligned_cols=218 Identities=13% Similarity=0.151 Sum_probs=170.7
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043362 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156 (516)
Q Consensus 77 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 156 (516)
+++|--..-..+...+.+.|-...|..+|+++ ..|.-.|-.|...|+..+|..+..+-.+ -+||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566778888999999999999999986 5688889999999999999998888777 3789999998888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHH
Q 043362 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVA 233 (516)
Q Consensus 157 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 233 (516)
...+..-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 887777788888877765442 1122222233468899999999865433 456888888888899999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 234 VQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 234 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
.+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+- . .-+...|...+....+.|.+++|.+.+.++.
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999988776 4555 567999999999999999999999988864 4 4455667777777888999999999988775
No 119
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.37 E-value=6.7e-05 Score=77.59 Aligned_cols=362 Identities=11% Similarity=0.032 Sum_probs=162.5
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
|+.+|......|++...++.|..+.-..-+.. ...-...|....-.+...++...+..-|+..++.. +.|...|..|.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLG 603 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLG 603 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHH
Confidence 55556666666666666666665522111110 00111122223334445566666666666666554 55666777777
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCchHHHH---HHHHHHHcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHh
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEKGLITWNA---MISGYAQNGLATHVLELYREMKSL------GVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~ 160 (516)
.+|.++|.+..|.++|++...-++.+|.. ....-+..|.+.+|+..+...... +..--..++.-+...+.-
T Consensus 604 eAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~ 683 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI 683 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777777777777776665544432221 122234456666666666555331 000011122222222222
Q ss_pred cCChHH-------HHHHHHHHHHcCCCCchHHHHHHHHHH-------------------Hh----CCCH---H---HHHH
Q 043362 161 LGAHSV-------GLEVEQQIQANGFGSNPFLNNALINMY-------------------AR----CGNL---K---KARA 204 (516)
Q Consensus 161 ~g~~~~-------a~~~~~~~~~~g~~~~~~~~~~li~~y-------------------~~----~g~~---~---~A~~ 204 (516)
.|-... +.+.+.-........+...|-.+.+++ .+ .+.. + -+.+
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~ 763 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYE 763 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHH
Confidence 222222 222222222211111222222111111 11 0100 0 0000
Q ss_pred HHhcCC--CCCHhHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 205 IFDGMP--RKTVVSWTAIIGGYGI----H----GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 205 ~~~~m~--~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
.+-.-. -.+..+|..++..|.+ . .+...|+..+++..+. ...+..+|+.|.-. +..|++.-+...|-+
T Consensus 764 c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIk 841 (1238)
T KOG1127|consen 764 CGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIK 841 (1238)
T ss_pred HhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhh
Confidence 000000 0123455555554433 1 1223556666665553 12344455544433 555566555555443
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----
Q 043362 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLE----- 347 (516)
Q Consensus 275 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----- 347 (516)
-.. ..+....+|..+.-.+....+++-|...|.... ..| +...|--....-...|+.-++..+|..--++.
T Consensus 842 s~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk 919 (1238)
T KOG1127|consen 842 SRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK 919 (1238)
T ss_pred hhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc
Confidence 331 233355566666666667777777777777665 444 45566444444455666666666666533221
Q ss_pred CCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 348 PMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 348 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
-.....+..........|+.++-....+++
T Consensus 920 a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 920 AKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred cchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 112233444445555566655555444444
No 120
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.0013 Score=63.97 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=223.1
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEIN-SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 87 (516)
.+|-+.|+.=..+|+..|++++|++=-.+-++. .|+ .-.|+....++.-.|++++|+..|..-++.. +.+...++.
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~g 109 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTG 109 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHh
Confidence 458889999999999999999998876666654 555 5678999999999999999999998877764 555566777
Q ss_pred HHHHHHHcC---------------------------------------------------CHHHHHHHHccc--------
Q 043362 88 LMTMYVKCG---------------------------------------------------SVDYGRKLFDQV-------- 108 (516)
Q Consensus 88 ll~~~~~~g---------------------------------------------------~~~~A~~~f~~~-------- 108 (516)
|.+++.... .+..|.-.+...
T Consensus 110 l~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~ 189 (539)
T KOG0548|consen 110 LAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYAS 189 (539)
T ss_pred HHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccc
Confidence 776662110 011111111100
Q ss_pred --------CCC-----C----c-------------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043362 109 --------PEK-----G----L-------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158 (516)
Q Consensus 109 --------~~~-----~----~-------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 158 (516)
..| + + .-.-.+.++.-+..++..|++-+....+.. -+..-++....++
T Consensus 190 ~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 190 GIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVY 267 (539)
T ss_pred ccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHH
Confidence 000 0 0 124446666677778888888888777653 3333445556678
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCCH
Q 043362 159 AHLGAHSVGLEVEQQIQANGFGSN------PFLNNALINMYARCGNLKKARAIFDGMPRK--TVVSWTAIIGGYGIHGHG 230 (516)
Q Consensus 159 ~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~ 230 (516)
...|.+.+....-...++.|...- ......+..+|.+.++++.|...|.+...+ +.. ...+....
T Consensus 268 ~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~ 340 (539)
T KOG0548|consen 268 LERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEA 340 (539)
T ss_pred HhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHH
Confidence 888877777776666665543211 112223455788888999999999875421 211 12233345
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
++++.......- +.|... -...-...+.+.|++..|...|.+++.+ -+-|...|....-.|.+.|.+..|+.=.+
T Consensus 341 Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 341 EKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555443 334331 1222356678899999999999999865 24478889999999999999999887666
Q ss_pred hcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 310 SML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 310 ~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
... ..|+ ...|.-=..++....+++.|...|.+.++.+|++......+..++..
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 554 4454 55565556667777899999999999999999887655555554443
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=8.3e-07 Score=53.52 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI 45 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 45 (516)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999987
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.00029 Score=74.71 Aligned_cols=168 Identities=11% Similarity=0.002 Sum_probs=108.8
Q ss_pred hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHc
Q 043362 47 SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126 (516)
Q Consensus 47 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 126 (516)
...+..|+..+...+++++|.++.+..++.. +.....|-.+...|.+.++.+++..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3456667777777777777777777555542 22233333333356666665544433 233444444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 043362 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 206 (516)
.++.-+..+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4453344444455442 3345577778888888888888888888888876 56788888888888888 888888877
Q ss_pred hcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 207 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
.+. +..|...+++.++.++|.++...
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 654 33366667778888888887774
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.30 E-value=1.6e-05 Score=65.45 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
....-.+...+...|++++|..+|+-.. ..| +..-|-.|...+...|++++|+..+.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3444556667788999999999999876 455 58889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 043362 363 EARNLDGIMRVRMMMRE 379 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~ 379 (516)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998864
No 124
>PLN02789 farnesyltranstransferase
Probab=98.28 E-value=0.00075 Score=64.14 Aligned_cols=209 Identities=9% Similarity=-0.006 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043362 83 SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNG-LATHVLELYREMKSLGVCPDAVTFVGVLSSC 158 (516)
Q Consensus 83 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 158 (516)
.++..+-..+...+..++|+.+.+.+.+.+. .+|+..-..+...| ++++++..++++.+.. +-+..+|+...-.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3566666777788899999999999876554 56776666777777 6799999999998764 33445666655555
Q ss_pred HhcCCh--HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc---CCH
Q 043362 159 AHLGAH--SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIH---GHG 230 (516)
Q Consensus 159 ~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~---g~~ 230 (516)
.+.|.. +.+..+.+.+++.. +.+..+|+....++.+.|+++++.+.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 566653 56677777777764 45677777777777777888888888877753 3566777666555443 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 043362 231 ----EVAVQLFDEMLKSGIRPDGTAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296 (516)
Q Consensus 231 ----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 296 (516)
+++++...++.... +-|...|+.+...+.. .+...+|...+...... -..+......|++.|+
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLC 266 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHH
Confidence 34455554554431 2344455555555544 12334455555444321 1123344445555554
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00053 Score=66.10 Aligned_cols=143 Identities=19% Similarity=0.188 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVD 293 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 293 (516)
.+--....+...|++++|+..++.+... .|| ..........+...++.++|.+.++++... .|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHH
Confidence 3333444455677888888888887764 344 444445556777788888888888888743 555 555666777
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 294 LLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
+|.+.|+..+|..+++... ..| |+..|..|..+|...|+..++... .+..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 8888888888888877765 234 577888888888888877666544 334566678888888
Q ss_pred HHHHHHHhC
Q 043362 372 RVRMMMRER 380 (516)
Q Consensus 372 ~~~~~m~~~ 380 (516)
.......+.
T Consensus 446 ~~l~~A~~~ 454 (484)
T COG4783 446 IFLMRASQQ 454 (484)
T ss_pred HHHHHHHHh
Confidence 887777654
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=1.8e-06 Score=52.38 Aligned_cols=34 Identities=38% Similarity=0.753 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 147 (516)
++||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=0.00012 Score=64.79 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=49.6
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN 332 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~ 332 (516)
.+......|++..|...+.+... .-++|...|+.+.-+|.+.|++++|..-|.+.. ..| +....+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 33344444444444444444432 223344444444444444444444444443332 122 23344444444444444
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHH
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
.+.|..++.......+.+...-..|..+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 44444444444444443444444444444444444444433
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00059 Score=65.75 Aligned_cols=177 Identities=17% Similarity=0.096 Sum_probs=127.8
Q ss_pred CHHHHHHHHhcCCC------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 043362 198 NLKKARAIFDGMPR------KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 198 ~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
++.++++.-+.++. ++...+...+.+.........+-.++- +... ..-...-|...+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 34555555566653 244445555554333222222222222 2221 111222333333 45567899999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
+..+... .+-|+..+....+.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+.|++.+|+..++.....+|+
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9998864 34467777788899999999999999999987 5676 778888899999999999999999999999999
Q ss_pred CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 350 NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
++..|..|+.+|...|+..++.....++..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999998887753
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00033 Score=61.63 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=111.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 186 NNALINMYARCGNLKKARAIFDGMPRK-----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 186 ~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
|.-++-+...+|+.+.|...++.+..+ -+.-..+| -+-..|++++|+++++.+.+.. +.|.+++.-=+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 334444445556666666655554322 11111111 2334678888888888888764 456666665555556
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh---cCCHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKI---HKNVEL 335 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~---~g~~~~ 335 (516)
..|.--+|++-+....+ .+..|.+.|.-+...|...|++++|.-.++++. ..| +...+..+...+-. ..+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67777788888887776 467799999999999999999999999999987 567 45555555555332 347888
Q ss_pred HHHHHHHHhhcCCCCccchH
Q 043362 336 AELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~ 355 (516)
|.+.+.+.+++.|.+...+.
T Consensus 210 arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHhChHhHHHHH
Confidence 99999999999986554443
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00065 Score=60.28 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=106.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcC
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHG 228 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g 228 (516)
...-.++...|+-+....+....... .+.|..+.+.++....+.|++..|...|.+.. .+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455566666666665555553332 24455566667777778888888888887765 346778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
++++|..-|.+..+. ..-+...++.+.-.+.-.|+.+.|..++...... -.-|..+-..|.......|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888888887774 1223456667777777778888888887777642 2236666677777777888888888776
Q ss_pred Hhc
Q 043362 309 ESM 311 (516)
Q Consensus 309 ~~m 311 (516)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 554
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=6.5e-05 Score=72.76 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=102.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
...+|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++.. ..| +..........+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3446677777888999999999999865 344 44567888888888899999988876 334 5666666667788
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
..++++.|+.+++++.+..|++..+|..|+.+|...|+++.|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=0.00021 Score=75.64 Aligned_cols=214 Identities=9% Similarity=0.087 Sum_probs=143.6
Q ss_pred CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043362 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF-VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190 (516)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 190 (516)
+...|..|+..|...+++++|.++.+...+. .|+...+ ..+...+.+.++...+..+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l--------------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLI--------------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------
Confidence 3578999999999999999999999977664 5665433 3333356666666555544 222
Q ss_pred HHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 043362 191 NMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 268 (516)
+...+..++.-..-+...|.+ .+..++-.+..+|.+.|+.++|..+|+++.+.. +-|....+.+.-.++.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222223222222222221 133466678888888899999999999988865 44677788888888888 88888
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C---------------------CCCHHHHHHHHHH
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V---------------------EPDGAVWGALLGA 326 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---------------------~p~~~~~~~ll~~ 326 (516)
.+++.++... |....++.++.+++.++. . ..-+.++-.+-..
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 8888877654 333334444444444433 1 1223445555577
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 888899999999999999999999888888888876
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.17 E-value=0.0013 Score=66.14 Aligned_cols=261 Identities=11% Similarity=0.110 Sum_probs=149.6
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCch--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEKGLI--TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 166 (516)
+.+-....++.+|..+++.+...++. -|..+...|+..|+++.|.++|.+.- .++-.+..|.+.|.++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34445566777777777777665543 35566667777777777777775431 23445666777777777
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 246 (516)
|.++-.+. .|.......|-+-..-.-+.|++.+|.++|-.+..|+. .|..|-++|..+..+++..+-....
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~-- 880 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH-- 880 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh--
Confidence 76655443 23344455566666666677777777777777766654 3566777777777777666532211
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCCHHHHHH
Q 043362 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV----EPDGAVWGA 322 (516)
Q Consensus 247 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ 322 (516)
-..|-..+..-+...|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-.- +.-...|.-
T Consensus 881 -l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 881 -LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred -hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 12344455566666777777777665443 245566777777777777766654320 001222221
Q ss_pred HH------HHHHhcCCHHH-------------HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 323 LL------GACKIHKNVEL-------------AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 323 ll------~~~~~~g~~~~-------------A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
-+ ...-++|-++. |..+.+-..+- .-+.....++..+...|++++|.+-+-+..+.
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 11 12223333333 33333322221 12345666777777888888886666555443
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=3.4e-05 Score=63.73 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
.....+...+...|++++|.+.++... ..| +...|..+...+...|+++.|...++++.+.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 445555666667777777777776654 234 466666667777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhC
Q 043362 364 ARNLDGIMRVRMMMRER 380 (516)
Q Consensus 364 ~g~~~~a~~~~~~m~~~ 380 (516)
.|++++|.+.++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766553
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.011 Score=57.92 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
+|-..+..-.+..-...|..+|.+..+.+..+ +....++++..++ .++.+.|.++|+.=.+++|- ++.--...++-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 45556666666677788888888888877777 5556666666555 46788888888877765442 44455677888
Q ss_pred HHhcCCHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----ccchHHHhhHHHHcC
Q 043362 295 LGRAGQLNEALELIESMLV---EP--DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN----TGYYVLLSNIYSEAR 365 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~~---~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 365 (516)
+...++-..|..+|++... .| ....|..+|.--..-|++..+.++-++....-|.+ ...-..+++.|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 8888888888888888751 23 25788888888888888888888887776655421 112344556666555
Q ss_pred ChhHHHHHHHHH
Q 043362 366 NLDGIMRVRMMM 377 (516)
Q Consensus 366 ~~~~a~~~~~~m 377 (516)
....-..-++.|
T Consensus 525 ~~~c~~~elk~l 536 (656)
T KOG1914|consen 525 LYPCSLDELKFL 536 (656)
T ss_pred cccccHHHHHhh
Confidence 554444444433
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.00061 Score=71.45 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 191 (516)
+..+-.|.....+.|.+++|..+++...+. .||. .....+..++.+.+.+++|....++..... +.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 445555666666666666666666666653 4543 344555566666666666666666666654 334555555666
Q ss_pred HHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 192 MYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
++.+.|++++|.++|++...+ +..+|..+..++-..|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665532 2445555556666666666666666665553
No 137
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.12 E-value=3.3e-06 Score=49.60 Aligned_cols=31 Identities=48% Similarity=0.827 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGV 43 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 43 (516)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.8e-06 Score=49.72 Aligned_cols=33 Identities=39% Similarity=0.615 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 146 (516)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00012 Score=70.87 Aligned_cols=124 Identities=13% Similarity=0.058 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 164 (516)
-.+|+..+...++++.|..+|+++.+.++..+..++..+...++..+|++++++.... .+-|...+..-...|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 3445555666677888888888887777766667777777777777888887777754 233555555555667777777
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77877777777753 3445577777777777777777777777766
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0045 Score=55.14 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=98.6
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
+.+.+.......+......-...|.+.|++++|.+.......-+....+ +..+.+..+.+-|...+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3444444433334333334445577778888888877764322333322 34455667777788888887762 245
Q ss_pred HHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHH
Q 043362 250 TAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWGAL 323 (516)
Q Consensus 250 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l 323 (516)
.|.+.|.+++.+ .+.+..|.-+|++|.+ ...|++.+.+.........|++++|..+++... .. .++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 566656555543 3456677777777764 245666666666666666777777777776665 11 234444444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhcCCCC
Q 043362 324 LGACKIHK-NVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 324 l~~~~~~g-~~~~A~~~~~~~~~~~p~~ 350 (516)
+..-...| +.+...+...++....|..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 44433333 3344455556666655554
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.03 E-value=0.00017 Score=59.51 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=87.0
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 043362 236 LFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V 313 (516)
Q Consensus 236 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 313 (516)
.|++... ..|+ ......+...+...|++++|.+.+..+... -+.+...+..+...|.+.|++++|...+++.. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455544 3443 344566777788889999999999888753 23467788888889999999999999888775 3
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 314 EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 314 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
.| +...+..+...+...|+.+.|...+++.++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5777778888899999999999999999999998764
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0018 Score=57.63 Aligned_cols=243 Identities=11% Similarity=0.032 Sum_probs=149.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCH
Q 043362 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 199 (516)
++-|.-.|.+..++..-...... +-+...-.-+-++|...|...... ..+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566667777776655444332 234445555666777776654332 2222222 33334444333333334443
Q ss_pred HHH-HHHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 200 KKA-RAIFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 200 ~~A-~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
++- .++.+.+..+ +......-...|...|++++|++...... ..+ ....=...+.+..+.+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233333322 22333333456888899999998887621 112 222223345567788889999998
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 275 MKNKYGLQPGPEHYTCMVDLLGR----AGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 275 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
|.+- -+..+.+.|..++.+ .+.+.+|.-+|++|. ..|+..+.+-...++...|++++|+.+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 8742 244556656666553 467889999999987 457888888888889999999999999999999999
Q ss_pred CCccchHHHhhHHHHcCChhHHH-HHHHHHH
Q 043362 349 MNTGYYVLLSNIYSEARNLDGIM-RVRMMMR 378 (516)
Q Consensus 349 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 378 (516)
+++.+...++-.--..|...++. +.....+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 88888888877777777765544 3444443
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.037 Score=57.55 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCC
Q 043362 319 VWGALLGACKIHKNV---ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 384 (516)
+-+.|+..|.+.++. -+|+.+++......|.|..+-..|+.+|.-.|-+..|.+.++.+.-+.+..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 345677888887765 467778888888889998888899999999999999999999886655543
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00014 Score=55.14 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
+..+...+...|++++|...+++.. ..| +...+..+...+...++++.|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456666777888888888887764 334 34666677777788888888888888888888877777888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 043362 366 NLDGIMRVRMMMRE 379 (516)
Q Consensus 366 ~~~~a~~~~~~m~~ 379 (516)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 145
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.86 E-value=0.023 Score=52.57 Aligned_cols=291 Identities=13% Similarity=0.070 Sum_probs=208.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHH---HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHh
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM---ISGYAQNGLATHVLELYREMKSLGVCPDAVTFV-GVLSSCAH 160 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~ 160 (516)
.--|-+.+...|++.+|+.-|....+.|+..|.++ ...|...|+...|+.-+.+..+ ++||-..-. .-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 34455666678888899988888888877666554 4578888888888888888876 467754322 22345678
Q ss_pred cCChHHHHHHHHHHHHcCCCCc--hHHH------------HHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSN--PFLN------------NALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGG 223 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~--~~~~------------~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 223 (516)
.|.+++|..=|+.+++.....+ ..++ ...+..+...|+...|++....+.+ .|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 8899999998888887642111 1111 2233445667888888888877653 377788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHH----HHHH---H----
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH----YTCM---V---- 292 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---i---- 292 (516)
|...|.+..|+.=++...+.. ..+..++.-+-..+-..|+.+.++...++-. .+.||-.. |..| +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999998888776643 3455666677777888999998888777776 56776432 2221 1
Q ss_pred --HHHHhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 293 --DLLGRAGQLNEALELIESML-VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 293 --~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
....+.+++.++.+-.+... ..|. ...+..+-..+...+++.+|++...++++++|++..++.--+.+|.-.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 12234566666666555443 3454 223444556678889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 043362 365 RNLDGIMRVRMMMRERR 381 (516)
Q Consensus 365 g~~~~a~~~~~~m~~~~ 381 (516)
..+++|..-++...+.+
T Consensus 355 E~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999987654
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2e-05 Score=46.14 Aligned_cols=31 Identities=39% Similarity=0.789 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGV 144 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 144 (516)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877653
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.0016 Score=54.44 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--HHHHHHHH
Q 043362 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD---GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--PEHYTCMV 292 (516)
Q Consensus 218 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li 292 (516)
..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......|.
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3334443 3566666666666666542 111 122223344556666666666666666653 21121 11233445
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 293 DLLGRAGQLNEALELIESMLVE-PDGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
..+...|++++|+..++..... .....+......+...|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5566666666666666554311 12344444455566666666666665543
No 148
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.83 E-value=0.038 Score=54.26 Aligned_cols=128 Identities=11% Similarity=0.061 Sum_probs=83.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
|+.+|+.||+-+-.. .++++.+.++++... .+-....|..-+..-....+++....+|.+.+..- .+...|..-++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 899999999877655 899999999999854 23345567777888888999999999999988764 34666666665
Q ss_pred HHHH-cCCHHHH----HHHHcccCC---CC---chHHHHHHHH---------HHHcCChhHHHHHHHHHHHC
Q 043362 91 MYVK-CGSVDYG----RKLFDQVPE---KG---LITWNAMISG---------YAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 91 ~~~~-~g~~~~A----~~~f~~~~~---~~---~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 142 (516)
---+ .|+...+ .+.|+-..+ -| -..|+..+.- |..+.+.+...++|+++...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 3322 2332221 122222111 12 2346555432 44455677777788887653
No 149
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.035 Score=52.75 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
+||..+...-.+.|+.+-|..+++. .|+..-= +..+...++.+.| +...+++| .||. +|..|+.+
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L 65 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLEL------EPRASKQ---VPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHL 65 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHc------CCChHHH---HHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHH
Confidence 5788888888889999999887654 4443221 2233344554444 44555555 4443 33444443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00053 Score=54.97 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHH
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLG 325 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~ 325 (516)
+..+...+...|++++|...|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555554311111 12334445555666666666666665543 1222 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+...|+.++|...++++.+..|++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 66666666666666666666666654
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.79 E-value=0.0021 Score=53.70 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=56.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhCCCHH
Q 043362 126 NGLATHVLELYREMKSLGVCPDA---VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN--PFLNNALINMYARCGNLK 200 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~ 200 (516)
.++...+...++.+.... +.+. ...-.+...+...|++++|...|+.+......++ ....-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555666655566655542 1121 1222233445556666666666666665442222 122333455555666666
Q ss_pred HHHHHHhcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 201 KARAIFDGMPRK--TVVSWTAIIGGYGIHGHGEVAVQLFDE 239 (516)
Q Consensus 201 ~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 239 (516)
+|...++....+ ....+......|...|+.++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666554322 223444455555666666666665554
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.75 E-value=0.00041 Score=55.59 Aligned_cols=96 Identities=20% Similarity=0.121 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN---TGYYVLL 357 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 357 (516)
.++..++..+.+.|++++|.+.++.+. ..|+ ...+..+...+...|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888899999999999999886 2343 3466678888999999999999999999988875 4568889
Q ss_pred hhHHHHcCChhHHHHHHHHHHhCC
Q 043362 358 SNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 358 ~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998753
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.67 E-value=0.00013 Score=52.21 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC-ChhHHHHHHHHHHh
Q 043362 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR-NLDGIMRVRMMMRE 379 (516)
Q Consensus 316 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 379 (516)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888888899999999999999999999999999999999999998 79999998887754
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0016 Score=61.45 Aligned_cols=155 Identities=12% Similarity=0.022 Sum_probs=111.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHH-------------H
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH-------------Y 288 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~ 288 (516)
.++...|++++|...--...+.. ..+......=-.++--.++.+.|...|++.+ .+.|+-.. +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 35667888888887776666532 1122222111223345678888888888877 34554222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-C-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 289 TCMVDLLGRAGQLNEALELIESML-V-----EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~-~-----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
..=.+...+.|++.+|.+.+.+.. + +|+...|.....+..+.|+.++|+.-.+++..++|.-..+|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 222345567899999999998876 3 3456667777777889999999999999999999988888889999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 043362 363 EARNLDGIMRVRMMMRER 380 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~~ 380 (516)
..++|++|.+-++...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999987653
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=4.5e-05 Score=57.04 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhcC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 299 GQLNEALELIESML-VEP---DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 299 g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
|++++|..+++++. ..| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555555443 112 233344445555555555555555555 4444444444445556666666666666555
Q ss_pred HH
Q 043362 375 MM 376 (516)
Q Consensus 375 ~~ 376 (516)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.64 E-value=0.0029 Score=64.36 Aligned_cols=139 Identities=19% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCCHhHHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CChHHHHHHHHHhH
Q 043362 211 RKTVVSWTAIIGGYGIH--G---HGEVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHA--------GLTDKGLEYFYGMK 276 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 276 (516)
..|..+|...+.+.... + ...+|..+|++..+. .|+- ..+..+..++... .++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34667777777765432 2 256788888887773 5553 3333332222111 01122222222221
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 277 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.......++..|..+.-.....|++++|...++++. ..|+...|..+...+...|+.++|...++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 110112233444444444444555555555555554 445555555555555555555555555555555555544
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.63 E-value=0.0064 Score=60.55 Aligned_cols=268 Identities=16% Similarity=0.133 Sum_probs=144.5
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHH---------HHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHH--HHHHHHhCC
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLF---------GKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC--HCICVKFGL 78 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~---------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~ 78 (516)
+..+.+.+=+-.|...|.+.+|..+- +.+-.. ..+.--++..=++|.+.++..--+-+ ++.+.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34455666666778888888877541 111111 11223344444566655555443333 345566665
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043362 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158 (516)
Q Consensus 79 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 158 (516)
.|+... +...++-.|.+.+|.++|.+ +|....|+++|..|+--. ...-+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~ 680 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEF 680 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHH
Confidence 566543 44556667888888887755 455555666665554210 11223
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 159 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
...|..++-..+.++-.+.. .++.--.+-..++...|+.++|..+ ...+|-.+-+.++-+
T Consensus 681 ~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 681 LGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIAR 740 (1081)
T ss_pred hhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHh
Confidence 33444444333333221110 0111112344555667777776544 234555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH
Q 043362 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDG 317 (516)
Q Consensus 239 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 317 (516)
++.. .+..+...+...+.+...+..|.++|.+|-.. ..++++....+++++|..+-++.| ..||+
T Consensus 741 kld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 741 KLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 5433 23445555555566677777888888877532 467788888888999888888877 33443
Q ss_pred HH-HH----------HHHHHHHhcCCHHHHHHHHHHHh
Q 043362 318 AV-WG----------ALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 318 ~~-~~----------~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
.. |. -.-.+|.+.|+-.+|.++++++.
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 21 11 11244555566666666666554
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0024 Score=59.84 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA-CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2233444444333 33457778899999999975 4557788999999
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 294 LLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+.+.|+.+.|..+|++.. .-|. ...|...+.--.+.|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999987 2233 35999999999999999999999999999887753
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00051 Score=62.17 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=71.8
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVEL 335 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~ 335 (516)
..+.+++++|...|..+++ +.| |+..|..-..+|.+.|.++.|.+=.+... ..|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556778888888877773 454 45556666778888888888877766665 4554 6778888888888888888
Q ss_pred HHHHHHHHhhcCCCCccchHHHhhH
Q 043362 336 AELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
|++.|++.++++|++......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888887544444333
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.00089 Score=65.09 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=58.0
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCH
Q 043362 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNV 333 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~ 333 (516)
...+...|++++|...|.++++. -+.+...|..+..+|.+.|++++|...++++. ..| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 33445556666666666666642 12244555566666666666666666666654 334 355566666666666666
Q ss_pred HHHHHHHHHHhhcCCCCccchHH
Q 043362 334 ELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
++|+..|+++++++|+++.....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 66666666666666666544333
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0087 Score=52.99 Aligned_cols=161 Identities=14% Similarity=0.188 Sum_probs=121.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
|..++-+....|+.+-|...++++... + |... .-..-..-+-..|.+++|.++++.+.++ . +.|..++-.=+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHH
Confidence 334555667789999999999998876 3 4432 2221222345578999999999999975 2 34566676666677
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC---ChhHH
Q 043362 296 GRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR---NLDGI 370 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 370 (516)
-..|+--+|++-+.... +-.|...|.-|...|...|+++.|.-.+++++-+.|.++..+..++..+...| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77788777777665544 44689999999999999999999999999999999999988889999887665 46667
Q ss_pred HHHHHHHHhCC
Q 043362 371 MRVRMMMRERR 381 (516)
Q Consensus 371 ~~~~~~m~~~~ 381 (516)
.+++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 77887776543
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.55 E-value=0.0012 Score=49.88 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.+....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554431 1122333344444444444555544444443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.53 E-value=0.0029 Score=54.69 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=82.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD--GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYT 289 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 289 (516)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445666677777778888888888887776433322 345667777777788888888887777643 33 345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 290 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
.+...|...|+...+..-++... ..+++|.+.++++.+.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66666666666555443322211 12577888888888888876 4555555555443
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00024 Score=50.07 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=37.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
...+...|++++|+..|+++++..|+++..+..++.++...|++++|..+++.+.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666777777777777777776666677777777777777777777666654
No 165
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.088 Score=50.05 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 328 (516)
..+.+..+.-|...|....|.++-... . .|+..-|-..+.+|+..+++++-.++... +..+.-|...+.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 345666677778888888877765444 4 37888999999999999999998887654 345688899999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
..|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+.+
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999998887772 22456788999999999987754443
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0019 Score=62.80 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=81.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhc
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRA 298 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 298 (516)
-...+...|++++|+++|++..+.. +-+...|..+..++...|++++|...++++.+. .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456678899999999999999863 345677888888999999999999999999853 44 577888999999999
Q ss_pred CCHHHHHHHHHhcC-CCCCHHHHHHHH
Q 043362 299 GQLNEALELIESML-VEPDGAVWGALL 324 (516)
Q Consensus 299 g~~~~A~~~~~~m~-~~p~~~~~~~ll 324 (516)
|++++|...|++.. ..|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999876 556544444443
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.49 E-value=0.00047 Score=48.52 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=49.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+...+.+.|++++|.+.|++.. ..| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788899999999999886 446 478888888999999999999999999999999864
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.48 E-value=0.0014 Score=56.54 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
.+..+...|...|++++|...|++.. ..|+ ...+..+...+...|++++|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555555666666666666666553 1121 345666667777777777777777777777777777777777777
Q ss_pred HHcCC
Q 043362 362 SEARN 366 (516)
Q Consensus 362 ~~~g~ 366 (516)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 66665
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.0024 Score=49.06 Aligned_cols=82 Identities=23% Similarity=0.179 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCchH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGV-CPDAVTFVGVLSSCAHLG--------AHSVGLEVEQQIQANGFGSNPF 184 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~ 184 (516)
.+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..+++|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3455677777888999999999999999999 999999999999877653 2445677899999999999999
Q ss_pred HHHHHHHHHHh
Q 043362 185 LNNALINMYAR 195 (516)
Q Consensus 185 ~~~~li~~y~~ 195 (516)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
No 170
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.46 E-value=0.089 Score=54.89 Aligned_cols=122 Identities=15% Similarity=0.213 Sum_probs=69.9
Q ss_pred HcCCHHHHHHHHcccCCCCc-hHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 94 KCGSVDYGRKLFDQVPEKGL-ITWNAMISG--YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~~-~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
..+++.+|.+..+++.++-+ ..|...+.+ ..+.|..++|..+++.....+.. |..|...+-..|...+..+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566666666666544322 223333333 34667777777666665544322 566676677777777777777777
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhCCCHHH----HHHHHhcCCCCCHhHHH
Q 043362 171 EQQIQANGFGSNPFLNNALINMYARCGNLKK----ARAIFDGMPRKTVVSWT 218 (516)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~m~~~~~~~~~ 218 (516)
|+++.... |+......+..+|.+.+++.+ |.+++...+++--..|+
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 77776642 345555556666666665543 45555555554444444
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0004 Score=62.85 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=78.7
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
+-+.+.+++++|+..|.+.. +.| |.+.|..-..+|.+.|.++.|.+-.+..+.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999999887 566 6788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 043362 371 MRVRMMMRER 380 (516)
Q Consensus 371 ~~~~~~m~~~ 380 (516)
.+.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9998877653
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.0015 Score=56.18 Aligned_cols=93 Identities=12% Similarity=-0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhh
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 359 (516)
...|..+...+...|++++|...|++.. ..|+ ..+|..+...+...|+.++|+..++++.++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556666777777888888888888764 2222 3578888888999999999999999999988888888888888
Q ss_pred HHH-------HcCChhHHHHHHHHH
Q 043362 360 IYS-------EARNLDGIMRVRMMM 377 (516)
Q Consensus 360 ~~~-------~~g~~~~a~~~~~~m 377 (516)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 777887666666544
No 173
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0027 Score=48.81 Aligned_cols=79 Identities=11% Similarity=-0.035 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCC-CCChhhHHHHHHHhhcCCC--------chHHHHHHHHHHHhCCCCChhHHH
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGY--------LWLGMCCHCICVKFGLDLDFSVGN 86 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 86 (516)
...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +-....+++.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456677777999999999999999999 9999999999998876432 345678899999999999999999
Q ss_pred HHHHHHHH
Q 043362 87 CLMTMYVK 94 (516)
Q Consensus 87 ~ll~~~~~ 94 (516)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988764
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.031 Score=52.60 Aligned_cols=125 Identities=13% Similarity=0.163 Sum_probs=55.3
Q ss_pred HHHHHHHhC-CCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-H
Q 043362 188 ALINMYARC-GNLKKARAIFDGMPR-----KT----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR-----PDGT-A 251 (516)
Q Consensus 188 ~li~~y~~~-g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t 251 (516)
.+...|.+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|.++|++....-.. ++.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344444444 555555555544321 01 123344555566666666666666665543221 1111 2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHh-cCCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHhcC
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNK-YGLQPG--PEHYTCMVDLLGR--AGQLNEALELIESML 312 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 312 (516)
|...+-.+...|++..|...+++.... .++..+ ......|+.++-. ...+++|..-|+.+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 222233444456666666666665422 112222 2234444555532 234555666666553
No 175
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.31 E-value=0.16 Score=48.09 Aligned_cols=296 Identities=14% Similarity=0.104 Sum_probs=192.9
Q ss_pred cHHHHHHHHHh--CCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhh--cCCCchHHHHHHHHHHHhCCCCChhH--HHH
Q 043362 14 CYNALISGYVL--NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV--DPGYLWLGMCCHCICVKFGLDLDFSV--GNC 87 (516)
Q Consensus 14 ~~n~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 87 (516)
-|.+|-.++.- .|+-..|.++-.+-.+. +..|...+..+|.+-. -.|+++.|++-|+.|+.. |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35566666654 57777777776655432 4667777888887654 459999999999999753 33222 222
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHh-
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAV--TFVGVLSSCAH- 160 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 160 (516)
|.----+.|+.+.|..+-+...+.- ...|.+.+...+..|+++.|+++.+.-++.. +.++.. .-..|+.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 3223346788888888877664432 3688899999999999999999998876542 445543 22334443221
Q ss_pred --cCChHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHH
Q 043362 161 --LGAHSVGLEVEQQIQANGFGSNPFL-NNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQ 235 (516)
Q Consensus 161 --~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~ 235 (516)
..+...|+..-.+..+. .||..- --.-..+|.+.|++.++-.+++.+-+ |.+..|. +-.+++.|+ .++.
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHH
Confidence 23456666666666553 444322 22345668899999999999988754 3333333 223345554 4444
Q ss_pred HHHHHHH-cCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhcC
Q 043362 236 LFDEMLK-SGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-AGQLNEALELIESML 312 (516)
Q Consensus 236 ~~~~m~~-~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 312 (516)
=+++... ..++|| ..+...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+-+..
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 4444332 124555 4667778888889999998888777665 458888899888887655 499999999988876
Q ss_pred CCCCHHHHHH
Q 043362 313 VEPDGAVWGA 322 (516)
Q Consensus 313 ~~p~~~~~~~ 322 (516)
..|....|..
T Consensus 391 ~APrdPaW~a 400 (531)
T COG3898 391 KAPRDPAWTA 400 (531)
T ss_pred cCCCCCcccc
Confidence 4555555544
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0034 Score=57.25 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 282 QPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWGALLGACKI---HKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 282 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
+-|...|-.|...|.+.|+++.|..-|.+.. .. ++...+..+..++.. .....++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 3478899999999999999999999998876 33 457777776666432 235678999999999999999999999
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
|+..+...|++.+|...++.|.+...+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999886554
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.28 E-value=0.0011 Score=49.49 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 304 (516)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666654221 1233344455666666666666666655 21 111 122223345556666666666
Q ss_pred HHHHHh
Q 043362 305 LELIES 310 (516)
Q Consensus 305 ~~~~~~ 310 (516)
.+++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.021 Score=53.71 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=62.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA-GLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLL 295 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 295 (516)
+..|...|++..|-.++.+ +...|... |++++|.+.|.+..+-+.-... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4445555555555444443 33345555 6777777777666544322222 23455667778
Q ss_pred HhcCCHHHHHHHHHhcC---C-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 296 GRAGQLNEALELIESML---V-----EPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.+.|++++|.++|++.. . +.+.. .+-..+-.+...||+..|...+++....+|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888887654 1 11111 2222333455678888888888888887764
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.023 Score=50.64 Aligned_cols=167 Identities=11% Similarity=0.014 Sum_probs=111.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCC--CCc--------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPE--KGL--------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGV 154 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 154 (516)
+++|...|.-..-+.+-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++...+-++...+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555444444444444443322 222 24456777777788888888888888887656677778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHh
Q 043362 155 LSSCAHLGAHSVGLEVEQQIQAN-----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGI 226 (516)
Q Consensus 155 l~~~~~~g~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~ 226 (516)
.+.--+.|+.+.|...++...+. ++..+..+..+....|.-.+++..|...|.+++.. |++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888899999999999877663 33333444444555677778888888888877643 55666665556666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRPDGTAFV 253 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p~~~t~~ 253 (516)
.|+..+|++..+.|.+. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 78888888888888874 44444433
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.25 E-value=0.0036 Score=61.16 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC------chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043362 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152 (516)
Q Consensus 79 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 152 (516)
+.+......+++......+++.+..++.+..... ..|..++++.|.+.|..++++.+++.=...|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4455556667777777777888888877665321 2466799999999999999999999888899999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
.+|..+.+.|++..|.++...|...+.-.+..++.--+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888877666666665555555554
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0047 Score=57.89 Aligned_cols=128 Identities=11% Similarity=0.059 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHH-hhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI-CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
.+|-.++...-+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578888988888888999999999998553 2233344333333 33346777799999998887 57788889999999
Q ss_pred HHHcCCHHHHHHHHcccCCC------CchHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 043362 92 YVKCGSVDYGRKLFDQVPEK------GLITWNAMISGYAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 142 (516)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999887653 1247888888888888888888888887764
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.23 E-value=0.0013 Score=46.93 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHK-NVELAELAFGKVIKLEP 348 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 348 (516)
++..|..+...+...|++++|+..|++.. ..| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677888888888899999998888876 445 4778888888888888 79999999999988877
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.0004 Score=49.41 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..|++++|+..++++.+..|++..++..++.+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777777777777777766543
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=97.21 E-value=0.0027 Score=52.83 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=77.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhH
Q 043362 292 VDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 369 (516)
.--+...|++++|..+|.-+. ..| +..-|..|...+...++++.|+..|..+..++++|+.++...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 344557899999999998765 333 677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 043362 370 IMRVRMMMRE 379 (516)
Q Consensus 370 a~~~~~~m~~ 379 (516)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.20 E-value=0.001 Score=48.03 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..|...++++.|..++++++.++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888887654
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.20 E-value=0.0091 Score=49.45 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=58.2
Q ss_pred CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043362 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191 (516)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 191 (516)
+......+...+...|++++|..+|+.+.... +-+..-|-.+..+|-..|++++|...|....... +.|+..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33444455555666777777777777666532 2233445556666666677777777777776665 345555556666
Q ss_pred HHHhCCCHHHHHHHHhc
Q 043362 192 MYARCGNLKKARAIFDG 208 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~ 208 (516)
+|.+.|+.+.|++.|+.
T Consensus 112 c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 112 CYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 67777777777666664
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.17 E-value=0.047 Score=49.88 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
.+..-|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|.+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 344455566666666666666665543333 23344555566666666666665544
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.017 Score=46.08 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=62.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchHHHHHHHHHHH
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG--SNPFLNNALINMYA 194 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~ 194 (516)
+..++-..|+.++|+.+|++....|...+ ...+..+.+++...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888877775544 235556667777788888888888777664211 12222223334556
Q ss_pred hCCCHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 043362 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 224 (516)
..|+.++|.+.+-...-++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776665544333333444444433
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.00086 Score=47.64 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=28.1
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVW 320 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~ 320 (516)
..|++++|.++|+.+... .+-+...+..++..|.+.|++++|.++++++. ..|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 345555555555555543 11144444455555555555555555555554 33443333
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.0036 Score=59.00 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=89.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhH---HhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCCHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMK---NKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML--------VEPDGA 318 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~~ 318 (516)
.|..|.+.|.-.|+++.|+..++.-. +.+|-.. ....+..|.+.+.-.|+++.|.+.++... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666667788888887766432 2233221 23456777888888899999988887643 112356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLE------PMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
+.-+|..+|....+++.|+..+.+-+.+. .....++..|+++|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66778888888888999998887755421 2344678899999999999999988766554
No 191
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.09 E-value=0.077 Score=50.99 Aligned_cols=161 Identities=20% Similarity=0.103 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCC-------CHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043362 188 ALINMYARCGNLKKARAIFDGMPRK-------TVVSWTAIIGGYGI---HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 257 (516)
.|+-.|....+++...++++.+... ....--...-++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777776543 11122223444555 6778888888887665556677777776665
Q ss_pred HHhc---------cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---HhcC-------CC
Q 043362 258 ACSH---------AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN----EALELI---ESML-------VE 314 (516)
Q Consensus 258 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m~-------~~ 314 (516)
.|-. ....++|...|.+.- .+.|+..+--.++..+...|.-. +..++- .... ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5422 223667777776554 44555443333333344444321 222221 1110 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.|-..+.+++.++.-.|+.+.|.+..+++.++.|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4667778899999999999999999999999887643
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.08 E-value=0.013 Score=50.44 Aligned_cols=80 Identities=18% Similarity=0.100 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCP--DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 191 (516)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...+.. +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 456666667777777777777777776542222 12356666666777777777777777766542 222344444554
Q ss_pred HHH
Q 043362 192 MYA 194 (516)
Q Consensus 192 ~y~ 194 (516)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.083 Score=44.66 Aligned_cols=133 Identities=11% Similarity=0.054 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC---CHHHH
Q 043362 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP---DGAVW 320 (516)
Q Consensus 245 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 320 (516)
..|+...-..|..+....|+..+|...|.+...- -+.-|....-.+.++....+++.+|...+++.. ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4667667777888888999999999999888752 344577777888888888899988888887764 112 22333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
-.+...+...|.+..|+..|+.+...-|+ +..-......+.+.|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667788899999999999999887774 34555566778888888777665554443
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.02 E-value=0.029 Score=44.75 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=71.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPD--GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLG 296 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 296 (516)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999988876654 34666788888899999999999998886521111 2222233445677
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043362 297 RAGQLNEALELIESMLVEPDGAVWGALLGA 326 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 326 (516)
..|+.++|...+-... .++...|.--|..
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ 115 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRF 115 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8899999888776543 2333344433333
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.01 E-value=0.013 Score=57.44 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=103.8
Q ss_pred HHHHhHH---CCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHcCCHHHHHHHHccc
Q 043362 34 LFGKMRE---QGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG--LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV 108 (516)
Q Consensus 34 l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~ 108 (516)
++..|.+ .+.+.+...+..++..+....+++.+..++-...... ...-..+..+++..|.+.|..+.+..+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444433 3456677788889999999999999999888776652 2233456679999999999999999999876
Q ss_pred CC----CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043362 109 PE----KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161 (516)
Q Consensus 109 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 161 (516)
.. +|..++|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 55 456899999999999999999999999998888788888888888887765
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.00 E-value=0.057 Score=55.13 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHH
Q 043362 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAV 319 (516)
Q Consensus 248 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~ 319 (516)
+...+..+.......|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++.. ..|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 334555554444455677777777777663 34566666677777777777777777766654 3444333
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.93 E-value=0.31 Score=44.54 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA-VTF---VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 188 (516)
...+-.....+.+.|++++|.+.|+++... -|+. .+- -.+..++.+.+++++|...+++.++.-......-+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 333444555566677888888888877764 2332 221 2344566677777777777777766432211112222
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 043362 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 189 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 268 (516)
.+.+.+.. ......|......+.. ........+|+..|+++.+. -|+.. -.++|
T Consensus 110 Y~~g~~~~---~~~~~~~~~~~~~~~~--------~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A 163 (243)
T PRK10866 110 YMRGLTNM---ALDDSALQGFFGVDRS--------DRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDA 163 (243)
T ss_pred HHHHHhhh---hcchhhhhhccCCCcc--------ccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHH
Confidence 22221100 0000011111000000 00001123555666666653 34432 23444
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML----VEP-DGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
...+..+... =..+--.+...|.+.|.+..|..-++.+. ..| .......+..+|...|..++|......+
T Consensus 164 ~~rl~~l~~~-----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 164 TKRLVFLKDR-----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4433333321 11222355677888888887777776665 112 3455666778888889988888876654
Q ss_pred h
Q 043362 344 I 344 (516)
Q Consensus 344 ~ 344 (516)
.
T Consensus 239 ~ 239 (243)
T PRK10866 239 A 239 (243)
T ss_pred h
Confidence 3
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.0086 Score=52.04 Aligned_cols=89 Identities=17% Similarity=0.302 Sum_probs=57.5
Q ss_pred CCCchHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 043362 110 EKGLITWNAMISGYAQN-----GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL----------------GAHSVGL 168 (516)
Q Consensus 110 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------g~~~~a~ 168 (516)
.++-.+|..++..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34445555555555432 45555555666666667777777777776654321 2445677
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 043362 169 EVEQQIQANGFGSNPFLNNALINMYARCGN 198 (516)
Q Consensus 169 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 198 (516)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888766554
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.85 E-value=0.012 Score=51.09 Aligned_cols=97 Identities=16% Similarity=0.337 Sum_probs=71.6
Q ss_pred HHHHhcC--CCCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 043362 203 RAIFDGM--PRKTVVSWTAIIGGYGI-----HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA------------- 262 (516)
Q Consensus 203 ~~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 262 (516)
.+.|+.. ..+|-.++..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677777777777764 466777778888899999999999999999876542
Q ss_pred ---CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043362 263 ---GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300 (516)
Q Consensus 263 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 300 (516)
.+.+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234667888888875 4888888888888888876654
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.098 Score=46.77 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC----CCCCHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG----LQPGPEHYTCM 291 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l 291 (516)
.-+.++..+.-.|.+.-.+.++.+..+...+-++.....|.+.-.+.|+.+.|..+|++..+..+ +.-+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666667778888888888888876666777777888888888999999888887765422 11122222233
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 292 VDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
...|.-++++.+|...+.+++ ..| |+...|.-.-...-.|+...|.+..+.+.+..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 334555667777777777776 222 444444433334445778888888888888777543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.012 Score=54.34 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHHHhh
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN---TGYYVLLSN 359 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 359 (516)
|..-+..+.+.|++++|...|+... ..|+ ...+--+...|...|++++|...|+++.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555443 2232 1233345555555566666666666665555443 223334455
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 043362 360 IYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 360 ~~~~~g~~~~a~~~~~~m~~ 379 (516)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55556666666666655543
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.74 E-value=0.00083 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=30.0
Q ss_pred HHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 340 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.02 Score=47.78 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh-----CCCCCCC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE-----RRLKKDP 386 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 386 (516)
.....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++.+.+ .|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34556777788899999999999999999999999999999999999999999999988853 4665543
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.67 E-value=0.32 Score=41.28 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 043362 181 SNPFLNNALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---IRPDGTAFV 253 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~ 253 (516)
|++..--.|..+....|+..+|...|++.. ..|......+..+....+++..|...++++.+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 444444445555555555555555555433 1244444445555555566666666666655532 2233 333
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
.+...+...|...+|+.-|+....- -|+...-......+.+.|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666777677766666633 4555544445555666666655543
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.67 E-value=0.0032 Score=40.15 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhh
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 359 (516)
.+|..+..+|...|++++|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999887776653
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=0.51 Score=48.15 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=129.0
Q ss_pred CCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh-CC--------CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCch
Q 043362 44 EINSVTMLCLLPICVDPGYLWLGMCCHCICVKF-GL--------DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114 (516)
Q Consensus 44 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~ 114 (516)
.|.+..|..+.......-.++.|...|-..... |+ -.+.....+=+.+| -|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 577777777766655555556565555332211 11 11112223333444 5999999999999988875
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 190 (516)
.|..+.+.|++-.+.++++.- |-..| ...|+.+...++....+++|.+.|.+-... ..++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 456677788888777766431 11111 356788888888888888888887654321 3466
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043362 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 270 (516)
++|.+...+++-+.+-+.+++ |....-.|...+.+.|.-++|.+.|-+-- .|. ..+.+|.+.+++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHH
Confidence 777777777777766666665 34455667788888888888887764421 121 34567777888888777
Q ss_pred HHHHh
Q 043362 271 YFYGM 275 (516)
Q Consensus 271 ~~~~~ 275 (516)
+-++.
T Consensus 900 laq~~ 904 (1189)
T KOG2041|consen 900 LAQRF 904 (1189)
T ss_pred HHHhc
Confidence 66544
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.61 E-value=0.0074 Score=43.43 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
..|.+.+++++|.++++.+. ..| +...|......+...|++++|...+++..+..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 56778889999999888876 445 57777778888899999999999999999999877644
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.61 E-value=0.0086 Score=58.15 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEPDG----AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
+...++.+..+|.+.|++++|...|++.. ..|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 45667777777777777777777777754 55652 34777777777777777777777777775321 121111
Q ss_pred --hHHHHcCChhHHHHHHHHHHhCCC
Q 043362 359 --NIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 359 --~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
..+....+.++..++++.+...|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 112223344466666666666554
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.56 E-value=0.045 Score=50.51 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=63.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHH
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLG 325 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~ 325 (516)
|...+....+.|++++|...|+.+.+.+.-.+ .+..+-.+...|...|++++|...|+.+. ..|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333455777777777777776532211 12455567777777788888877777764 1232 444445556
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 67778888888888888888888764
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.54 E-value=0.035 Score=44.72 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 244 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
...|+..++.+++.+|+..|++..|.++.+...+.|+++.+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567778888888888888888888888888888787777777777776543
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.53 E-value=0.78 Score=43.67 Aligned_cols=303 Identities=14% Similarity=0.059 Sum_probs=188.1
Q ss_pred chHHHHHHHHhHHCCCCCChhhHHHHHHHh--hcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHH--HHcCCHHHHHH
Q 043362 28 VSEAVSLFGKMREQGVEINSVTMLCLLPIC--VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMY--VKCGSVDYGRK 103 (516)
Q Consensus 28 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~ 103 (516)
+..+...|..-+.. ..|..|-.++ ...|+-..|++.-.+..+. +..|..-.-.|+.+- .-.|+++.|.+
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 45666777665543 2244444433 3457888888877655432 244444444444432 34699999999
Q ss_pred HHcccCCCC-c--hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 043362 104 LFDQVPEKG-L--ITWNAMISGYAQNGLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG- 178 (516)
Q Consensus 104 ~f~~~~~~~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g- 178 (516)
-|+.|...- . .-.-.|.-.-.+.|+.+.|...-.+.-.. -| -.......+...+..|+++.|.++.+.-....
T Consensus 142 kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 142 KFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 999997522 1 12223333446788888888887776543 33 35678889999999999999999998776632
Q ss_pred CCCchHH--HHHHHHHHHh---CCCHHHHHHHHhcCC--CCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043362 179 FGSNPFL--NNALINMYAR---CGNLKKARAIFDGMP--RKTVVSW-TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250 (516)
Q Consensus 179 ~~~~~~~--~~~li~~y~~---~g~~~~A~~~~~~m~--~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 250 (516)
+.++..- -..|+.+-.. .-+...|...-.+.. .||.+.- -.-..++.+.|+..++-.+++.+-+....|+.
T Consensus 220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i- 298 (531)
T COG3898 220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI- 298 (531)
T ss_pred hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH-
Confidence 3444322 1223322211 123444544433332 3444332 22346788999999999999999887666653
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH-
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGAC- 327 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~- 327 (516)
...|.+..--+.+..-+++..+-..++|| .+.-..+..+-...|++..|..--+... ..|....|..|...-
T Consensus 299 -----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIee 373 (531)
T COG3898 299 -----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEE 373 (531)
T ss_pred -----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHh
Confidence 22344433334444445555444355664 5566667777778899887776555443 458888887777664
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 043362 328 KIHKNVELAELAFGKVIK 345 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~ 345 (516)
...||-.++.....+.++
T Consensus 374 AetGDqg~vR~wlAqav~ 391 (531)
T COG3898 374 AETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hccCchHHHHHHHHHHhc
Confidence 445999999998888876
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=1.3 Score=45.89 Aligned_cols=118 Identities=12% Similarity=0.056 Sum_probs=90.5
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHH
Q 043362 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323 (516)
Q Consensus 244 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 323 (516)
|......|.+--+.-+...|...+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334445566677777888899999988876664 5788888888899999999999888888764 36677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
..+|.+.|+.++|.+.+-+...+ .-...+|.+.|++.+|.+.--+-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 89999999999998887665322 15678889999999888775443
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.43 E-value=0.016 Score=54.79 Aligned_cols=257 Identities=14% Similarity=0.020 Sum_probs=157.4
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCCh----hhHHHHHHHhhcCCCchHHHHHHHHHH--Hh--CCC-CChhHHHHHHH
Q 043362 20 SGYVLNSLVSEAVSLFGKMREQGVEINS----VTMLCLLPICVDPGYLWLGMCCHCICV--KF--GLD-LDFSVGNCLMT 90 (516)
Q Consensus 20 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~ll~ 90 (516)
.-+++.|+....+.+|+..++.|. -|. ..|+.|..+|.-.+++++|.+.|..=+ .. |-. -.......|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 357889999999999999999883 343 346667778888899999999876322 11 100 01112223344
Q ss_pred HHHHcCCHHHHHHHHcc-c---CCCC-----chHHHHHHHHHHHcCC--------------------hhHHHHHHHHH--
Q 043362 91 MYVKCGSVDYGRKLFDQ-V---PEKG-----LITWNAMISGYAQNGL--------------------ATHVLELYREM-- 139 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~-~---~~~~-----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m-- 139 (516)
.+--.|.+++|.-.-.+ + .+.+ ..++..+...|...|+ ++.|.+.|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44445666666544222 1 0111 1244446666655443 23344444321
Q ss_pred --HHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC-CchHHHHHHHHHHHhCCCHHHHHHHHhcCC-
Q 043362 140 --KSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFG-SNPFLNNALINMYARCGNLKKARAIFDGMP- 210 (516)
Q Consensus 140 --~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~- 210 (516)
...|-. .-...|..+.+.|.-.|+++.|+..|+.-+. .|-. .....+..|.+++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111100 1123455666666777899999988875433 2311 224567789999999999999999887542
Q ss_pred ------CCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 211 ------RKT--VVSWTAIIGGYGIHGHGEVAVQLFDEMLK----SG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 211 ------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
.+. ..+.-++...|.-...+++|+.++.+-.. .+ ..-....+-+|..++...|..++|+.+.....+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333 34555678888888889999888876432 11 122346788899999999999999887766553
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.38 E-value=0.65 Score=41.18 Aligned_cols=60 Identities=7% Similarity=-0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGV--CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
.....+.+.|++.+|.+.|+++...-. +--....-.+..++.+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666777777777777665311 011223344555666666777776666666653
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.03 Score=53.22 Aligned_cols=64 Identities=16% Similarity=-0.058 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..++..|...|.+.+++..|++...+.++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4556777788899999999999999999999999999999999999999999999999999753
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.6 Score=45.19 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=71.3
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
+.-+...|+..+|.++-.+..-+|-..|-.-+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHh
Confidence 3344556778888888887777777777777788888887777665555432 1345666777788888888887
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
.++.+.. |. . -.+.+|.+.|++.+|.++--+
T Consensus 765 KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHHH
Confidence 7776553 11 1 456777788888777766544
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.39 Score=45.94 Aligned_cols=85 Identities=21% Similarity=0.203 Sum_probs=46.4
Q ss_pred hccCChHHHHHHHHHhHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH-HHHHHH--HHHHhcC
Q 043362 260 SHAGLTDKGLEYFYGMKNKYGLQP-----GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA-VWGALL--GACKIHK 331 (516)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll--~~~~~~g 331 (516)
.+.|.+..|.+.|...+ ++.| +...|........+.|++++|+.--++.. .-|.. ++..+. .++...+
T Consensus 260 fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655 3333 34445555555666677777766665553 22322 222222 3344556
Q ss_pred CHHHHHHHHHHHhhcCC
Q 043362 332 NVELAELAFGKVIKLEP 348 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p 348 (516)
++++|.+-++++.+...
T Consensus 336 ~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 67777777777766553
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.12 E-value=0.6 Score=41.39 Aligned_cols=57 Identities=18% Similarity=0.076 Sum_probs=35.5
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCC----hhhHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEIN----SVTMLCLLPICVDPGYLWLGMCCHCICVKF 76 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 76 (516)
....+.+.|++.+|...|+.+...- |+ ....-.+..++-+.++++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445667788888888888877652 22 223444556667777777777777776665
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.03 E-value=0.33 Score=48.96 Aligned_cols=201 Identities=12% Similarity=0.105 Sum_probs=109.5
Q ss_pred ccHHHHHHHHHhCCC--chHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 13 VCYNALISGYVLNSL--VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 13 ~~~n~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
..++.-=.+|.+-.+ +-+-+.-+++|+++|-.|+.... ...|+-.|.+.+|-++|.+ .|.+ |-.+.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlE 666 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALE 666 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHH
Confidence 334555556665444 33455557888888877887654 3456677889988888754 3422 34456
Q ss_pred HHHHcCCHHHHHHHHcccCCC---------CchHH-----HHHHHHHHHcCChhHHHHHHHH------HHHCCC---CCC
Q 043362 91 MYVKCGSVDYGRKLFDQVPEK---------GLITW-----NAMISGYAQNGLATHVLELYRE------MKSLGV---CPD 147 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~---------~~~~~-----~~li~~~~~~g~~~~A~~~~~~------m~~~g~---~p~ 147 (516)
+|.....+|.|.++...-... -..++ .+....+...|+.++|..+.-+ +.+.+- ..+
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 666666666666665433210 00111 1223334455666666554321 111111 123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 043362 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227 (516)
Q Consensus 148 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 227 (516)
..+...+..-+-+...+..|.++|..|-.. .+++++....++|.+|..+-++.++--...|-....-++..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 344444444455566667777777666442 35677777888888888888877753222233333334444
Q ss_pred CCHHHHH
Q 043362 228 GHGEVAV 234 (516)
Q Consensus 228 g~~~~A~ 234 (516)
.++++|.
T Consensus 818 DrFeEAq 824 (1081)
T KOG1538|consen 818 DRFEEAQ 824 (1081)
T ss_pred hhHHHHH
Confidence 4444443
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.02 E-value=0.012 Score=42.99 Aligned_cols=26 Identities=15% Similarity=-0.031 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
++..+...+...|++++|++.+++..
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.84 E-value=0.015 Score=42.48 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKL----EPM---NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..+++.+...|...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777888888888888888887753 222 245688999999999999999999987653
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.5 Score=43.47 Aligned_cols=110 Identities=16% Similarity=0.091 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhcC-CCCC-HHHH
Q 043362 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG---QLNEALELIESML-VEPD-GAVW 320 (516)
Q Consensus 246 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~p~-~~~~ 320 (516)
+-|...|..|..+|...|+++.|..-|....+- -.+++..+..+..++.... ...++.++|+++. .+|+ +.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 456778888888888888888888888888753 2335666666666655432 3457888888876 4564 5555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
..|...+...|++.+|...++.|++..|.+. .+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHH
Confidence 5566778999999999999999999887664 344443
No 223
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.76 E-value=0.087 Score=41.73 Aligned_cols=90 Identities=22% Similarity=0.188 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc----cchHHHhhHHHHcCC
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT----GYYVLLSNIYSEARN 366 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 366 (516)
-+++..|+++.|++.|.+.. .-| ....||.-..+++-.|+.++|..-+++++++.-+.. .+|+.-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35667888888888888765 334 578888888888888888888888888888653222 246677778888889
Q ss_pred hhHHHHHHHHHHhCCC
Q 043362 367 LDGIMRVRMMMRERRL 382 (516)
Q Consensus 367 ~~~a~~~~~~m~~~~~ 382 (516)
-+.|..=|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888877654
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.65 E-value=0.099 Score=51.05 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP----EHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 246 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
+.+...++.+..+|...|++++|...|++..+ +.|+. ..|..+..+|...|++++|.+.+++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33467788888999999999999999998874 46663 348888899999999999999998875
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.51 E-value=1.6 Score=38.57 Aligned_cols=194 Identities=21% Similarity=0.131 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCC-----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMP-----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS- 257 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 257 (516)
.........+...+.+..+...+.... ......+......+...+.+..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 444445555555555555555554432 12333444444455555555566666655554322221 11111112
Q ss_pred HHhccCChHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCC
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGL--QPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD--GAVWGALLGACKIHKN 332 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~ll~~~~~~g~ 332 (516)
.+...|+++.+...+...... .. ......+......+...++.++|...+.... ..|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666665321 11 0122233333333555666666666666554 2222 4555556666666666
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.|...+.......|.....+..+...+...+.++++...+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66677776666666665334445555555555556666666655543
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.48 E-value=2.7 Score=40.93 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHH-HHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE-HYTCMV 292 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li 292 (516)
..|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+..++ .|+...|..+|+.-... -||.. --.-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 456677777777777888899999998888 5677778888887655 47778888888876654 23433 335566
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 293 DLLGRAGQLNEALELIESML--VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
.-+.+.++-+.|..+|+... ...+ ...|..+|.--..-|+...+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77778888889999998654 2223 5678888888888888888888888888887764
No 227
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.38 E-value=0.95 Score=37.29 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
..++..+.+.+.......+++.+.+.+ ..+....+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555666667777777766665 35566667777777654
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.29 Score=46.85 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
..+..|.-.|.+.+.+.+|++.-+... ..+|....---..++...|+++.|...|+++++++|+|-.+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 355677778889999999998877765 334677776777889999999999999999999999998888888777766
Q ss_pred cCChhHH-HHHHHHHHhC
Q 043362 364 ARNLDGI-MRVRMMMRER 380 (516)
Q Consensus 364 ~g~~~~a-~~~~~~m~~~ 380 (516)
.....+. .++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6655544 7788888653
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.31 E-value=0.99 Score=36.08 Aligned_cols=139 Identities=15% Similarity=0.186 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
-.|..++..++..+...+. +..-++-++.-....-+=+-..+.++.+-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 3566677777777766532 33334444433333333344444444443322211 234444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 306 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
..+-.+. .+......-+......|.-+.-.+++..+.+.+..++....-++++|.+.|+..++.+++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4443332 334445556677778888888888888887655556788889999999999999999999999888874
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.28 E-value=4.2 Score=41.89 Aligned_cols=119 Identities=9% Similarity=-0.030 Sum_probs=67.5
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCCChhhHHHHH-------HHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLL-------PICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
.|-...|..|...-.+.-.++.|...|-+...- |++.-.. +..+. ..-+--|++++|.+++-.+-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 466677887776666666666666666554331 2211000 01110 11123478888888887665543
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC-----chHHHHHHHHHHHcCChhHHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-----LITWNAMISGYAQNGLATHVLELYR 137 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 137 (516)
..+.++.+.|++-...++++.-...+ ..+|+.+...++....+++|.+.|.
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888776543221 1456666655555555555555554
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.26 E-value=0.29 Score=39.45 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCchHHHHHHHHHHH
Q 043362 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPFLNNALINMYA 194 (516)
Q Consensus 143 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~ 194 (516)
...|+..++.+++.+++..+++..|.++.+...+ .+++.+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3567777777777777777777777777777765 456666666766665433
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.14 E-value=0.28 Score=40.79 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCCHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN----KYGLQPGPEH 287 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 287 (516)
...++..+...|++++|+.+.+.+.... +.|...+..++.++...|+...|.++|..+.+ ..|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555556666666666666665542 33555666666666666666666666655432 2456665544
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.13 E-value=1.2 Score=44.44 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=99.2
Q ss_pred HHHhCCCchHHHHHHH--HhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH
Q 043362 21 GYVLNSLVSEAVSLFG--KMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV 98 (516)
Q Consensus 21 ~~~~~g~~~~A~~l~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 98 (516)
...-+|+++++.+..+ ++. ..++ ..-.+.++.-+-+.|..+.|.++- .|+ ..-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFV---------TDP---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CCh---HHHhHHHHhcCCH
Confidence 3445678888776665 222 1122 334666777777888888887763 333 2345567789999
Q ss_pred HHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043362 99 DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178 (516)
Q Consensus 99 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 178 (516)
+.|.++-++.. +...|..|.....++|+++-|.+.|.+... |..++-.|...|+.+.-.++-......|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999887776 456899999999999999999999887542 5566667777888888777777777665
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 179 FGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 179 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
-+|....++.-.|+.++..+++.+.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1344445555567777776666543
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.10 E-value=2.7 Score=40.64 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCC---c----hHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVPEKG---L----ITWNAMISGYAQ---NGLATHVLELYREMKSLGVCPDAVTFVGVLS 156 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~~~~---~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 156 (516)
.|+-.|-...+++...++.+.++... + ..-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33334666777777777777766541 1 111223344445 6777777777777555555666777766665
Q ss_pred HH
Q 043362 157 SC 158 (516)
Q Consensus 157 ~~ 158 (516)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.09 E-value=3.8 Score=44.83 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=17.3
Q ss_pred HHHHHHHHHcC--ChhHHHHHHHHHHH
Q 043362 117 NAMISGYAQNG--LATHVLELYREMKS 141 (516)
Q Consensus 117 ~~li~~~~~~g--~~~~A~~~~~~m~~ 141 (516)
-.+|.+|++.+ ..+.|+....+.+.
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35677888877 66777777666654
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.08 E-value=2.2 Score=37.65 Aligned_cols=198 Identities=17% Similarity=0.091 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHH-HH
Q 043362 150 TFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIG-GY 224 (516)
Q Consensus 150 t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~-~~ 224 (516)
.+......+...+.+..+...+...... ........+..+...+...+++..+.+.+...... +......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3334444444444444444444444331 12233334444444455555555555555544321 1122222222 56
Q ss_pred HhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCH
Q 043362 225 GIHGHGEVAVQLFDEMLKSGI--RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 301 (516)
...|+++.|...|.+...... ......+......+...++.+.+...+...... ... ....+..+...+...+.+
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccH
Confidence 777788888888877754211 112333444444466778888888888887753 222 356677777888888888
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 302 NEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
++|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888887765 3344 445555555555667788999888888888775
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.07 E-value=0.15 Score=46.17 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHH
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-------VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN---TGYYVL 356 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~ 356 (516)
.|+.-++.| +.|++.+|...|.... ..|+..-| |..++...|+++.|...|..+.+..|++ +..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355444433 4566777766665543 23455555 6677777777777777777777655443 345666
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|+....+.|+.++|..+++.+.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777643
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.05 E-value=0.18 Score=45.65 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=61.5
Q ss_pred CCCcccHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCC----------------chHHH
Q 043362 9 THLTVCYNALISGYVLN-----SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY----------------LWLGM 67 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------------~~~a~ 67 (516)
++|-.||-+++..|... +.++=.-..++.|.+.|+..|..+|+.||..+-+..- -+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 67888888888877654 4555566677888888998999999888887654322 13455
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 68 CCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 68 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
.++++|...|+-||..+-..|++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 666666666666666666666666655553
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.92 E-value=0.28 Score=44.42 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=80.7
Q ss_pred HHHHHhcCC--CCCHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----------
Q 043362 202 ARAIFDGMP--RKTVVSWTAIIGGYGIH-----GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG----------- 263 (516)
Q Consensus 202 A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 263 (516)
.++.|...+ ++|-.+|.+++..|... +..+=....++.|.+.|+.-|..+|..||+.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 77889999999988754 556777778899999999999999999998875533
Q ss_pred -----ChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 264 -----LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 264 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
.-+-++.++++|.. +|+.||.++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23457899999975 59999999999999999988864
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.69 E-value=2 Score=43.58 Aligned_cols=160 Identities=17% Similarity=0.136 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDG-----TAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPE 286 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 286 (516)
...+++...-.|+-+.+++++.+-.+.+ +.-.. ..|..++..+.. ....+.+.+++..+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3345555556677777777776655422 21111 123333333332 45778899999999865 46665
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH-HHh
Q 043362 287 HYTCM-VDLLGRAGQLNEALELIESMLV------EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV-LLS 358 (516)
Q Consensus 287 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~ 358 (516)
.|.-. .+.+...|++++|.+.|++... +-....+--+.-.+....++++|...|.++.+...-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 4667778999999999997641 112233334555577788999999999999987655444554 445
Q ss_pred hHHHHcCCh-------hHHHHHHHHHHh
Q 043362 359 NIYSEARNL-------DGIMRVRMMMRE 379 (516)
Q Consensus 359 ~~~~~~g~~-------~~a~~~~~~m~~ 379 (516)
.+|...|+. ++|.+++.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 556778888 888888887754
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.69 E-value=0.81 Score=37.38 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=34.6
Q ss_pred HhcCCHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 296 GRAGQLNEALELIESML----VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
.+.|++++|.+.|+.+. ..| ....--.|+.+|.+.+++++|...+++.+++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 35566666666666654 111 2344445666677777777777777777777766543
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=3.1 Score=37.17 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCCccchHHHhhHHHHcCChhHHHHH
Q 043362 320 WGALLGACKIHKNVELAELAFGKVIKL----EPMNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
+-+.|-.+....|+..|+..++.-.++ +|.+..+...|+.+|- .|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 333444444455666666666664442 2445555555555553 4555554444
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.52 E-value=0.088 Score=31.05 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.+|..+...|...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888889999999999998888886
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=94.36 E-value=0.87 Score=44.76 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043362 265 TDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLG---------RAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN 332 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~ 332 (516)
.+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++.. ..| |......+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 34555666666543344554 222332222211 1123445555555554 333 56666666676677777
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.|...|+++..++|+.+.+|...+..+.-+|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888877544
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.36 E-value=1.7 Score=35.57 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRP---DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 297 (516)
.....+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++.+.-.|+ ..|.....+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 33445567777777777766654 121 2234455666666777777777777776655333333 233333444333
Q ss_pred cCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 298 AGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 298 ~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
-...+. .|..+. .+.| .+....|...|+++++.-|++.
T Consensus 95 ~~~~~~---~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEG---SLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhh---HHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 222211 111111 1111 1224577778888888888764
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.36 E-value=0.87 Score=45.52 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=69.0
Q ss_pred HHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 224 YGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
..-.|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. -.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 344566666555554111 11111 23355666666667777777665433221 134455677777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 303 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.|.++.++. ++...|..|.......|+++.|++.+.+.. -+..|+-.|.-.|+.+.-.++.+....+
T Consensus 336 ~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777766654 366677777777777777777777777653 2445666666677766655555555443
No 247
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.27 E-value=7 Score=39.69 Aligned_cols=345 Identities=13% Similarity=0.085 Sum_probs=182.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhH-HHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTM-LCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
+-..|+++|..--.....+.+..++..++.. .|-.+-| .....-=.+.|..+.+..+|+..+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3455777776554445555666666766644 4554432 22222234567778888888877653 466666666666
Q ss_pred HHHH-HcCCHHHHHHHHcccCCC------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 043362 90 TMYV-KCGSVDYGRKLFDQVPEK------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC---- 158 (516)
Q Consensus 90 ~~~~-~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---- 158 (516)
.... ..|+.+.....|+....- ....|...|.--..++++.....+|++.++. |.. .|+.....+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~~-~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PLH-QLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hhh-HhHHHHHHHHHHH
Confidence 5443 346677777777665432 1245666666666666666666666666542 110 011000000
Q ss_pred Hh-----cCChHHHHHHHHHHHH--------------------------------------------------------c
Q 043362 159 AH-----LGAHSVGLEVEQQIQA--------------------------------------------------------N 177 (516)
Q Consensus 159 ~~-----~g~~~~a~~~~~~~~~--------------------------------------------------------~ 177 (516)
.+ ....+++.++-..... .
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 00 0111111111111000 0
Q ss_pred ----C-----------CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 178 ----G-----------FGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDE 239 (516)
Q Consensus 178 ----g-----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 239 (516)
+ .+++..+|+..++.-.+.|+.+.+.-+|++..-+ =...|-..+.-.-..|+.+-|..++..
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 0 0122334444455555555555555555544322 111233333333333555555555554
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHhcC-CC
Q 043362 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP-EHYTCMVDLLGRAGQLNEAL---ELIESML-VE 314 (516)
Q Consensus 240 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~-~~ 314 (516)
..+--++-.+.+-..-..-+-..|+++.|..+++.+.+.+ |+. ..-..-+....+.|..+.+. +++.... .+
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 4432222222222222223455789999999999998753 543 23333456667888888887 4444433 11
Q ss_pred CCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 315 PDGAVWGALLG-----ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 315 p~~~~~~~ll~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
-+......+.. .+...++.+.|..++.++.+..|++...|..++......+
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 22222222221 2445688999999999999999999988998888876665
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.19 E-value=2.7 Score=34.56 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=18.3
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 54 LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
+..+...+........++.+++.+ ..+....|.++..|++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 333333334444444444444443 23444555555555543
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=94.19 E-value=5.2 Score=39.53 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=102.2
Q ss_pred hHH--HHHHHHHHhcC-----CHHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHh---------ccCChHHHHHHHHHhH
Q 043362 215 VSW--TAIIGGYGIHG-----HGEVAVQLFDEMLK-SGIRPDG-TAFVSVLSACS---------HAGLTDKGLEYFYGMK 276 (516)
Q Consensus 215 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 276 (516)
..| ..++.+..... ..+.|+.+|.+... +...|+- ..|..+...+. ......+|.++-.+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666655422 35678889999882 2356653 33333322221 1234556667766666
Q ss_pred HhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 277 NKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 277 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
+ +.| |+.....+..++.-.|+++.|...|++.. ..|| ..+|......+...|+.++|.+.+++.+++.|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 4 333 66777777777788888999999999987 6676 6677767777788899999999999999999976443
Q ss_pred hH--HHhhHHHHcCChhHHHHHH
Q 043362 354 YV--LLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 354 ~~--~l~~~~~~~g~~~~a~~~~ 374 (516)
-. ..+..|... ..++|.+++
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHH
Confidence 22 223345444 355666554
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.18 E-value=0.16 Score=29.85 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
..|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888888864
No 251
>PRK15331 chaperone protein SicA; Provisional
Probab=94.16 E-value=0.66 Score=38.88 Aligned_cols=86 Identities=9% Similarity=-0.033 Sum_probs=40.3
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHH
Q 043362 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201 (516)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 201 (516)
-+-+.|++++|..+|+-+...+. -|..-+..|..++-..+.+++|...|......+. .|+...--...+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 34455666666666655544321 1222333444444455555566555555544331 222222234445555555555
Q ss_pred HHHHHhcC
Q 043362 202 ARAIFDGM 209 (516)
Q Consensus 202 A~~~~~~m 209 (516)
|+..|...
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 55555443
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=5.1 Score=37.04 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=59.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
.....|++.+|..+|+...... +-+...-..+..++...|+.+.|..++..+..+. -.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 3445566666666666655532 1122334445555566666666666665544220 0000011111223333333332
Q ss_pred HHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCccchHHHhhHHHHcC
Q 043362 303 EALELIESMLVEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 303 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 365 (516)
+..++-.+.-..| |...--.+...+...|+.+.|...+-.+++.+ -.+...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222222234 34444444455555555555555444444322 223334444444444444
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.87 E-value=4.5 Score=40.20 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=66.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCC--HHHHHHHHHHHH
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPD--GAVWGALLGACK 328 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~ 328 (516)
..+...+-+.|+.++|.+.+.++.+.+...-+..+...|+..|...+.+.++..++.+-. .-|. ...|+..+--++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345666678899999999999998754332345567788999999999999999988764 1233 456666553333
Q ss_pred hcCC---------------HHHHHHHHHHHhhcCCCCc
Q 043362 329 IHKN---------------VELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 329 ~~g~---------------~~~A~~~~~~~~~~~p~~~ 351 (516)
.-++ -..|.+...++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3332 1235577888888776544
No 254
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.79 E-value=2.1 Score=41.70 Aligned_cols=127 Identities=8% Similarity=-0.008 Sum_probs=74.2
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHHHcCCHHHHHHHHcccC--CCCchH-HHHHHHHH
Q 043362 48 VTMLCLLPICVDPGYLWLGMCCHCICVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLIT-WNAMISGY 123 (516)
Q Consensus 48 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~-~~~li~~~ 123 (516)
..|...+.+..+..-++.|+.+|..+.+.| +.+++.++++++..|+ .|+...|.++|+.-. -+|... -+-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 445566666666666677777777776666 5666667777776654 566666666665432 233322 23344445
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 124 AQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
..-++-..|..+|+.-... +..+ ...|..++.--..-|++..+..+-+.+..
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5566666676677644332 2222 34566666666666777666666655555
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.73 E-value=0.81 Score=43.08 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=114.4
Q ss_pred HHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCc---hHHHHHHHHHHHh
Q 043362 123 YAQNGLATHVLELYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFGSN---PFLNNALINMYAR 195 (516)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~y~~ 195 (516)
+.++.+.++|+..+.+-... +..---.++..+..+.+..|.++++...--..+.. ..... ...|..|..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888887776543 11111235566666777777766654432111110 01111 1223333444444
Q ss_pred CCCHHHHHHHHhc---CC---C-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHhcc
Q 043362 196 CGNLKKARAIFDG---MP---R-K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR-P----DGTAFVSVLSACSHA 262 (516)
Q Consensus 196 ~g~~~~A~~~~~~---m~---~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~t~~~ll~a~~~~ 262 (516)
.-++.+++.+-.. .+ . . .-....+|..++...+.++++++.|+...+--.. . ....+..|-+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 3344444333221 11 1 0 1123344566666777788888888776542111 1 124577777777888
Q ss_pred CChHHHHHHHHHhHH---hcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHhcC----CCCCH----HHHHHHHHH
Q 043362 263 GLTDKGLEYFYGMKN---KYGLQPGPEHYTC-----MVDLLGRAGQLNEALELIESML----VEPDG----AVWGALLGA 326 (516)
Q Consensus 263 g~~~~a~~~~~~~~~---~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~----~~p~~----~~~~~ll~~ 326 (516)
.++++|.-+..+..+ .+++.--..-|.+ |.-+|...|.+-+|.+.-++.. ...|. .....+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888887766655432 2233222222332 2334555666666666555433 12232 333455566
Q ss_pred HHhcCCHHHHHHHHHHHhhc
Q 043362 327 CKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~ 346 (516)
|+..|+.+.|..-++.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 77788888777777766543
No 256
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.68 E-value=7.7 Score=38.07 Aligned_cols=351 Identities=12% Similarity=0.056 Sum_probs=185.1
Q ss_pred cHHHHHHHH--HhCCCchHHHHHHHHhHHC--CCCC------------ChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC
Q 043362 14 CYNALISGY--VLNSLVSEAVSLFGKMREQ--GVEI------------NSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77 (516)
Q Consensus 14 ~~n~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 77 (516)
.|-.|..++ -+.+.+.+|++.|..-..+ +..| |-.-=+.....+...|++.+|+.+++.+...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444433 3467888888888776554 2222 11112234456678999999999998887664
Q ss_pred CC----CChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc-hHHHHHHHHHHHcCC------------------------
Q 043362 78 LD----LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQNGL------------------------ 128 (516)
Q Consensus 78 ~~----~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~------------------------ 128 (516)
++ -+..+||.++-++++.=-++.-. .+ ..|+ .-|.-||..|.+.=.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e----~~-s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKE----SM-SSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHH----hc-ccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHH
Confidence 44 78889999888887643222111 11 1121 234444444433211
Q ss_pred -------hhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CchHHHHHHHHHHHhC
Q 043362 129 -------ATHVLELYREMKSLGVCPDAVT-FVGVLSSCAHLGAHSVGLEVEQQIQANGFG----SNPFLNNALINMYARC 196 (516)
Q Consensus 129 -------~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~ 196 (516)
..--++++......-+.|+... ...+...+.+ +.+++..+-+.+....+. .=+.++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222222234454322 2223333332 445554444444332211 1134566677777777
Q ss_pred CCHHHHHHHHhcCC--CCCHh-------HHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH---HH
Q 043362 197 GNLKKARAIFDGMP--RKTVV-------SWTAIIGGYG----IHGHGEVAVQLFDEMLKSGIRPDGTAF-VSVLS---AC 259 (516)
Q Consensus 197 g~~~~A~~~~~~m~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~---a~ 259 (516)
++...|.+.+.-+. +|+.. +-..+-+..+ ..-+...-+.+|+......+ |..-+ ..|+. -+
T Consensus 312 ~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 312 VQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHL 389 (549)
T ss_pred HhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHH
Confidence 88887777665443 23221 1111222222 11223344555555554432 22211 11222 23
Q ss_pred hccCC-hHHHHHHHHHhHHhcCCCC-CHHHHHHHH----HHHHhc---CCHH---HHHHHHHhcCCCC----CHHHHHHH
Q 043362 260 SHAGL-TDKGLEYFYGMKNKYGLQP-GPEHYTCMV----DLLGRA---GQLN---EALELIESMLVEP----DGAVWGAL 323 (516)
Q Consensus 260 ~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g~~~---~A~~~~~~m~~~p----~~~~~~~l 323 (516)
-+.|. -++|.++++.+.+ +.| |...-|.+. ..|..+ ..+. +-.+++++....| +...-|.|
T Consensus 390 W~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 33444 7788888888874 344 332222221 122211 1111 2223333333222 44566667
Q ss_pred HHH--HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 324 LGA--CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 324 l~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
..| ...+|++.++.-.-.-+.++.| ++.+|..++-......++++|..++..+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 666 5678999999998888899999 8889999999999999999999999876
No 257
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.59 E-value=8.6 Score=38.32 Aligned_cols=156 Identities=10% Similarity=0.136 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 194 (516)
..-+++..+.++-...-+..+..+|..-| -+...|..++.+|... ..++-..+|+++.+..+. |++...-|.+.|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 45567788888888888888888888864 5777888888888877 567778888888887654 5556666777777
Q ss_pred hCCCHHHHHHHHhcCCCC------CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCC
Q 043362 195 RCGNLKKARAIFDGMPRK------TV---VSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGL 264 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~ 264 (516)
+ ++.+.+..+|.++..+ +. ..|..++..- ..+.+..+.+..+... .|..--.+.+--+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 6 8888888877765321 11 1344443311 2344455555555443 2222333444444455666667
Q ss_pred hHHHHHHHHHhHH
Q 043362 265 TDKGLEYFYGMKN 277 (516)
Q Consensus 265 ~~~a~~~~~~~~~ 277 (516)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766654
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=2.3 Score=39.79 Aligned_cols=153 Identities=10% Similarity=0.008 Sum_probs=89.5
Q ss_pred hCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHH--HHHHHHhccCChHH
Q 043362 195 RCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT--AFV--SVLSACSHAGLTDK 267 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~--~ll~a~~~~g~~~~ 267 (516)
-.|+..+|-..++++.+ .|..+|+--=.++..+|+.+.-...+++.... ..||.. +|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666676666666653 37777777777888888888777777777653 234432 222 22334456788888
Q ss_pred HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 268 GLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESMLVEPD------GAVWGALLGACKIHKNVELAELAF 340 (516)
Q Consensus 268 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~ 340 (516)
|++.-++..+ +.| |.-.-.++...+.-.|+..++.++..+-...-+ ...|--..-.+...+.++.|+++|
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8887776663 333 444445666667777888888888776541100 001111112234457788888887
Q ss_pred HHH--hhcCCCCc
Q 043362 341 GKV--IKLEPMNT 351 (516)
Q Consensus 341 ~~~--~~~~p~~~ 351 (516)
+.- .++..+|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 543 23444444
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.19 E-value=8.7 Score=37.21 Aligned_cols=150 Identities=9% Similarity=0.027 Sum_probs=81.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--H
Q 043362 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP---DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--P 285 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~ 285 (516)
.....+|..++..+.+.|+++.|...+.++...+..+ ++.....-+...-..|+..+|...++..... .+..+ .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 3455678888889999999999999888887743211 2233344455556678888888888877752 11111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 286 EHYTCMVDLLGRAGQLNEALEL-IESMLVEPDGAVWGALLGACKIH------KNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
.....+...+.. ..+..... ........-...+..+...+... ++.+++...|+++.+..|.....|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111000 00000000 00000000112222233333333 7888899999999999988777777766
Q ss_pred hHHHH
Q 043362 359 NIYSE 363 (516)
Q Consensus 359 ~~~~~ 363 (516)
..+.+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 66543
No 260
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.07 E-value=0.55 Score=40.39 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 293 DLLGRAGQLNEALELIESML-VEPD------GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
.-+.+.|++++|..-|.... .-|. .+.|..-..++.+.+.++.|+.-..+.++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34556777887777766554 1121 3344444566788899999999999999999988778888889999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 043362 366 NLDGIMRVRMMMRERR 381 (516)
Q Consensus 366 ~~~~a~~~~~~m~~~~ 381 (516)
.+++|+.=++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999887643
No 261
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.06 E-value=14 Score=39.19 Aligned_cols=79 Identities=9% Similarity=-0.063 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043362 83 SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162 (516)
Q Consensus 83 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 162 (516)
..-..-+..+++.+++.....++..- ..+...-.....+....|+.++|.+....+=..|. ........++..+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 34445555666778888777743332 23444455566677778887777766666654442 23344555555555444
Q ss_pred C
Q 043362 163 A 163 (516)
Q Consensus 163 ~ 163 (516)
.
T Consensus 178 ~ 178 (644)
T PRK11619 178 K 178 (644)
T ss_pred C
Confidence 3
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.02 E-value=5 Score=38.05 Aligned_cols=193 Identities=13% Similarity=0.072 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-------HcccCCCC--chHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCC---HHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKL-------FDQVPEKG--LITWNAMISGYAQNGLATHVLELYREMKSL-GVCPD---AVT 150 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~-------f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~t 150 (516)
++..+..+.++.|.+++++.. +....+.+ ..+|-.+..++-+.-++.+++.+-..-... |..|. ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 445555566666666555432 11111111 245666666666666666666654443321 22221 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhCCCHHHHHHHHhcC-------CCCCHh---
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQANG-----FGSNPFLNNALINMYARCGNLKKARAIFDGM-------PRKTVV--- 215 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-------~~~~~~--- 215 (516)
..++..+....+.++++.+.|+...+.. .-....++.+|...|.+..++++|.-+..+. .-.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345666777777888888887776621 1123467788888888888888775544332 222221
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 216 ---SWTAIIGGYGIHGHGEVAVQLFDEMLK----SGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 216 ---~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
+.-.|.-++...|....|.+.-++..+ .|-+|. ......+...|...|+.|.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233355567777777777776666433 343332 2334456667778888888777776654
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=6.5 Score=35.24 Aligned_cols=200 Identities=11% Similarity=0.039 Sum_probs=91.8
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC--chHHHHHHHHHHHcC
Q 043362 50 MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNG 127 (516)
Q Consensus 50 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g 127 (516)
|.-...++....++++|+..+....+. .+.+...|.+ ...++.|..+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 334445566667777777766555432 1222222221 223444555555554433 234555666677777
Q ss_pred ChhHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 128 LATHVLELYREMKS--LGVCPDAV--TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 128 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
.++-|-..+.+.-+ .++.|+.. .|.--+......++...|.++ +..+-..|.+...+++|-
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHHH
Confidence 76666555544322 22444321 222222222222222222222 223333444555555554
Q ss_pred HHHhcCCCC--------CH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCChHHHHHH
Q 043362 204 AIFDGMPRK--------TV-VSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---IRPDGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 204 ~~~~~m~~~--------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
..|.+-... +. ..+-+.|-.|.-..++..|...+++--+.+ -.-+..+...||.+|- .|+.++...+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 444332210 11 123344445555566677777776633321 1223456666666654 4566666555
Q ss_pred HH
Q 043362 272 FY 273 (516)
Q Consensus 272 ~~ 273 (516)
+.
T Consensus 250 l~ 251 (308)
T KOG1585|consen 250 LS 251 (308)
T ss_pred Hc
Confidence 43
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.96 E-value=2.1 Score=42.42 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=101.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
+..+...-+++-++..+ +.||-.+...++ +--......++.+++++..+. ....+..-- .....|..-
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-----gE~~lg~s~-~~~~~g~~~--- 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-----GEASLGKSQ-FLQHHGHFW--- 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-----HHHhhchhh-hhhcccchh---
Confidence 34445555555555555 456544332222 333455678888888877653 111111000 000111111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM--NTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 306 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
+.+..-..+|-..+-..|...+.+.|+.++|++.++++++..|. +......|++++...+.+.++..++.+-.+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11110001122333455667777888888999888888876654 4456778888888888999888888887666666
Q ss_pred CCCceeEEE--EC--CEEEEEEeCCCC-CcchHHHHHHHHHHHHHHHhCCCCCC
Q 043362 384 KDPGYSYVE--LK--GRVHLFMVGDRN-HHQTVEIYRMLDKLENLVQEHDGTKR 432 (516)
Q Consensus 384 ~~~~~s~i~--~~--~~~~~f~~~~~~-~~~~~~~~~~l~~l~~~m~~~g~~p~ 432 (516)
+....+|.. ++ ..-..|.....+ .+........++-+.+.++..+.+|.
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 665555421 00 000011111001 11111222334567777777888887
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.51 E-value=1.1 Score=35.63 Aligned_cols=89 Identities=19% Similarity=0.125 Sum_probs=46.5
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-CH---HHHHHHHHHHHhcCC
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEP-DG---AVWGALLGACKIHKN 332 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p-~~---~~~~~ll~~~~~~g~ 332 (516)
.+..|+++.|++.|.+...- .+-....||.-..++.-+|+.++|++=+++.. ..| .. ..|..-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 44555555555555555421 22245555555555555666665555555443 111 11 112222234667777
Q ss_pred HHHHHHHHHHHhhcCCC
Q 043362 333 VELAELAFGKVIKLEPM 349 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~ 349 (516)
.+.|..-|+.+-+++..
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777777766643
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.44 E-value=9.5 Score=35.72 Aligned_cols=17 Identities=18% Similarity=-0.093 Sum_probs=10.9
Q ss_pred HHhcCCHHHHHHHHHHH
Q 043362 327 CKIHKNVELAELAFGKV 343 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~ 343 (516)
+.+.++++.|...|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566777777776643
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.43 E-value=8.2 Score=34.97 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCc---cchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNT---GYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+..-|.+.|.+..|..-++++++.-|+.+ ..+..+..+|.+.|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34668899999999999999998765543 3466778889999999999998776643
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=1.3 Score=41.35 Aligned_cols=159 Identities=14% Similarity=0.008 Sum_probs=117.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHHhcCCH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM----VDLLGRAGQL 301 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 301 (516)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...||...|..+ .-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 566777888888899999999999999998875 345666544443 3345579999
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----ccchHHHhhHHHHcCChhHHHHHHH
Q 043362 302 NEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN----TGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
++|++.-++.. +.| |...-.++.......|+..++.++..+-...-... ...|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999998876 333 66777778888888999999999877765433221 1234456666777899999999999
Q ss_pred HHHhCCCCCCCc
Q 043362 376 MMRERRLKKDPG 387 (516)
Q Consensus 376 ~m~~~~~~~~~~ 387 (516)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 776555555544
No 269
>PRK09687 putative lyase; Provisional
Probab=92.34 E-value=9.7 Score=35.64 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=7.7
Q ss_pred CChhHHHHHHHHHHHcCC
Q 043362 80 LDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 80 ~~~~~~~~ll~~~~~~g~ 97 (516)
+|..+....+..+...|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 344444444444444443
No 270
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.14 E-value=5.5 Score=36.15 Aligned_cols=239 Identities=16% Similarity=0.182 Sum_probs=139.3
Q ss_pred cCCHHHHHHHHcccCCC----C---chHHHHHHHHHHHcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcC
Q 043362 95 CGSVDYGRKLFDQVPEK----G---LITWNAMISGYAQNGLATHVLELYREMKSL---GV--CPDAVTFVGVLSSCAHLG 162 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~g 162 (516)
..++++|..-|++..+. + ..+...+|..+.+.|++++.++.|.+|..- .+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34567777777665432 2 235556788888888888888888887531 11 124456777777777666
Q ss_pred ChHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---------------CHhHHHHHHH
Q 043362 163 AHSVGLEVEQQIQAN-----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---------------TVVSWTAIIG 222 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------------~~~~~~~li~ 222 (516)
+.+.-...++..++. +-..--.+-..|...|...|.+.+..+++.++... =...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666666665544331 11112233456777788888888888877766311 1246777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh-----ccCChHHHHHHHHHhHHhcCCCCCH-----HHHHHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACS-----HAGLTDKGLEYFYGMKNKYGLQPGP-----EHYTCM 291 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l 291 (516)
.|....+-.+-..+|++...- ..-|.+. ...++.-|. +.|.+++|..-|-++-+.|.-.-++ .-|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888877777777788876542 2234433 334555553 4678888876555554444322222 224555
Q ss_pred HHHHHhcCC----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043362 292 VDLLGRAGQ----LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339 (516)
Q Consensus 292 i~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 339 (516)
..++.+.|- -++|. -....|.....+.|+.+|..+ +..+-+++
T Consensus 279 ANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred HHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 666666552 11111 001346677888899888654 34433333
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.12 E-value=15 Score=37.33 Aligned_cols=158 Identities=9% Similarity=-0.060 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCCCh------hhHHHHHHHhhc----CCCchHHHHHHHHHHHhCCCCChhHH
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINS------VTMLCLLPICVD----PGYLWLGMCCHCICVKFGLDLDFSVG 85 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 85 (516)
..+++...-.|+-+.+++++.+..+.+---.. -+|..++..+.. ..+.+.+.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34555556667777777776665443211111 122223322222 34556667777766665 3444333
Q ss_pred H-HHHHHHHHcCCHHHHHHHHcccCCCC-------chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043362 86 N-CLMTMYVKCGSVDYGRKLFDQVPEKG-------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157 (516)
Q Consensus 86 ~-~ll~~~~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 157 (516)
. --...+...|++++|.+.|++..... ...+--+.-.+.-.+++++|.+.|..+.+.. .-+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 2 22344556677777777777543211 1233344455666677777777777776642 2233344444333
Q ss_pred H-HhcCCh-------HHHHHHHHHHHH
Q 043362 158 C-AHLGAH-------SVGLEVEQQIQA 176 (516)
Q Consensus 158 ~-~~~g~~-------~~a~~~~~~~~~ 176 (516)
| ...++. ++|.+++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 344555 566666655543
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=10 Score=35.11 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=68.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-hHH---HHHHHHHHhcCCHHH
Q 043362 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV-VSW---TAIIGGYGIHGHGEV 232 (516)
Q Consensus 157 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~---~~li~~~~~~g~~~~ 232 (516)
.....|++.++..+++...... +-+...--.|..+|...|+.+.|..++..++.... ..| .+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788888888888888764 23455667788899999999999999999874311 111 112223333333333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 233 AVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 233 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333222 23 344444555556666666666665544443
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.97 E-value=3.6 Score=34.73 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=53.5
Q ss_pred HHcCCHHHHHHHHcccCCCCchHHHHH-----HHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHHhcCCh
Q 043362 93 VKCGSVDYGRKLFDQVPEKGLITWNAM-----ISGYAQNGLATHVLELYREMKSLGVCPDAV-TFVGVLS--SCAHLGAH 164 (516)
Q Consensus 93 ~~~g~~~~A~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~--~~~~~g~~ 164 (516)
++.+..++|+.-|..+.+.+--.|-.| .....+.|+...|+..|.+.-...-.|-.. -..-|=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344556666666666655443333322 233445566666666666654432222221 1111111 12344445
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+......+.+...+-+.....-.+|.-+-.|.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5444444444433333333444445555555555555555555443
No 274
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.85 E-value=5.7 Score=31.92 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 281 (516)
.+..+..+...|+-++-.+++.++.+. -+|++..+..+..||.+.|+..++.+++.++-++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 445567778888888888888887653 4677788888888999999999988888888765 53
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.84 E-value=14 Score=36.37 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=136.2
Q ss_pred cCCCchHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHHcCCHHHHHHHHcccCCCC-chHHHHHHHH--HHHcCCh
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLD------FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-LITWNAMISG--YAQNGLA 129 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~--~~~~g~~ 129 (516)
+.+++.++..+|.++.+.. ..+ ....+-++++|.- .+++.....+....+.. -..|-.+..+ +-+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 4456666666666655442 111 1233455666653 33444444443333221 2234343333 3456777
Q ss_pred hHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCchHHHHHHHH
Q 043362 130 THVLELYREMKSL--GVCP------------DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG----FGSNPFLNNALIN 191 (516)
Q Consensus 130 ~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~li~ 191 (516)
.+|++.+..-.+. +-.| |-..=+..+.++...|.+.+|+.+++++...= ...+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 7777777665543 2221 11222345566778899999999888887643 4478889998888
Q ss_pred HHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCChHHHH
Q 043362 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH--AGLTDKGL 269 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~ 269 (516)
+++++=-++- -+.+...=..-|--||..|.+.=+.-++.. | ..+-|-...+..++.-..- .....--.
T Consensus 176 mlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 176 MLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred HHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 8876433221 122222112234445555543221111100 0 0122332222223222111 11111122
Q ss_pred HHHHHhHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 270 EYFYGMKNKYGLQPGPE-HYTCMVDLLGRAGQLNEALELIESML-------VEPDGAVWGALLGACKIHKNVELAELAFG 341 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 341 (516)
+++..-. ++-+.|+-. +...|++.+.. +.+++..+-+.+. .+.-..++..++....+.++...|.+.+.
T Consensus 246 q~l~~We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 246 QILENWE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2222222 224455432 33344444433 3344443333322 11235677788888888888888888888
Q ss_pred HHhhcCCCCc
Q 043362 342 KVIKLEPMNT 351 (516)
Q Consensus 342 ~~~~~~p~~~ 351 (516)
-+..++|...
T Consensus 323 lL~~ldp~~s 332 (549)
T PF07079_consen 323 LLKILDPRIS 332 (549)
T ss_pred HHHhcCCcch
Confidence 8887777653
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=16 Score=38.79 Aligned_cols=174 Identities=11% Similarity=0.029 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCchHHH----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN----AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 161 (516)
..-+++..+...++-|..+-+.-.. |..+-. .-..-+.+.|++++|...|-+-... +.|. .++.-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3455666666667777766554322 222222 2233345678888888877665432 3332 234445555
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV--SWTAIIGGYGIHGHGEVAVQLFDE 239 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 239 (516)
....+-..+++.+.+.|+. +...-..|+.+|.|.++.++-.++.+...+ ... -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5566666677778888765 455567789999999998888888777662 221 134455666666666677666554
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 240 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
... +......+ +-..+++++|.+++..+.
T Consensus 489 ~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 332 22333333 345678888888876653
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.55 E-value=0.42 Score=30.22 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
++..+...|.+.|++++|.+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555666666666555554
No 278
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.50 E-value=4 Score=37.21 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIR--PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVD 293 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 293 (516)
|+.-+..| +.|++.+|...|....+.... -....+.-|..++...|+++.|..+|..+.+.++-.|. +..+--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55544433 345566666666666553211 01123334555556666666666666665555443332 244444555
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 043362 294 LLGRAGQLNEALELIESML 312 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~ 312 (516)
...+.|+.++|...+++..
T Consensus 224 ~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 224 SLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 5555555555555555443
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.43 E-value=5.9 Score=34.14 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
.+..+.+.|.+.|+.+.|.+.|.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~ 63 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRAR 63 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34455555555555555555555544
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.30 E-value=0.42 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
+|..+...|...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888887774
No 281
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.20 E-value=10 Score=35.01 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhc-CCHHHHHHHHHhcC---C-------CCC-----HHHHHH----HHHHHHhcCCHHHHHHHHHH
Q 043362 283 PGPEHYTCMVDLLGRA-GQLNEALELIESML---V-------EPD-----GAVWGA----LLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 283 p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~---~-------~p~-----~~~~~~----ll~~~~~~g~~~~A~~~~~~ 342 (516)
-|..-|...+....+. -.++++.+++.... + .-| ..+|.. ....|...|.+.+|.++.++
T Consensus 225 ~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 225 YDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred ccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3555555555544332 34666666665543 0 011 123333 33678999999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.++|-+...+..|...++..|+--.|.+-++.+.+
T Consensus 305 ~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 305 ALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9999999999999999999999998888887777753
No 282
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.03 E-value=23 Score=37.39 Aligned_cols=68 Identities=15% Similarity=-0.080 Sum_probs=42.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCc-------hHHHHHHHHHHHhCCCCChh
Q 043362 14 CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL-------WLGMCCHCICVKFGLDLDFS 83 (516)
Q Consensus 14 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 83 (516)
.| ++|-.+.+.|++++|.++..+.... .......|...+..+....+- +....-++..++.....|++
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 44 6888999999999999999666543 456667788889988765332 23444455544443322554
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.91 E-value=1.6 Score=40.31 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMK 140 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 140 (516)
..++..+..+|+.+.+.+.++++...+. ..|..++.+|.+.|+...|+..|+++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444455555555555555555444332 355555555555555555555555543
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.88 E-value=9.2 Score=36.08 Aligned_cols=61 Identities=15% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCCCCH-HH-HHHHHHHHhccCC--hHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDG-TA-FVSVLSACSHAGL--TDKGLEYFYGMKNKYGLQPGPEHYTCMV 292 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~-~t-~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 292 (516)
+.+..+|+.+.+.|...+. .- ...++..+..... ...+.++++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4566677777776665432 22 3333332222222 34667777777765 7777777766554
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.87 E-value=30 Score=38.39 Aligned_cols=112 Identities=17% Similarity=0.114 Sum_probs=51.8
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
++.--+.|-+.+|..++.-=.+.-...|.+...-+.+.+.+++|.-.|+..-+ .--.+.+|...|++.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334445555555444433222233444444444455555555555543221 112345556666666666
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
.+..++.. +-.--..+-..|+.-+...++.-+|-++..+..
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 66555432 111111122445555556666666655555543
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.76 E-value=1.1 Score=41.29 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445556666667777777777777777777767777777777777777777777776654
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.75 E-value=13 Score=33.82 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=105.0
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH
Q 043362 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRK------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFV 253 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~ 253 (516)
|-...|+.-+. -.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....- -.|| .-|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33445554443 45679999999999998743 22344455667788999999999999977642 3333 3333
Q ss_pred HHHHHHh---cc----CCh---HHHHHHHHHhHHhcCC---CCCHHHH------------HHHHHHHHhcCCHHHHHHHH
Q 043362 254 SVLSACS---HA----GLT---DKGLEYFYGMKNKYGL---QPGPEHY------------TCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 254 ~ll~a~~---~~----g~~---~~a~~~~~~~~~~~~~---~p~~~~~------------~~li~~~~~~g~~~~A~~~~ 308 (516)
.-|.+.+ .. .+. ..|..-|+.++.++.- .||...- ..+.+-|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3343333 22 233 3455556666655422 2232211 23446678889998888888
Q ss_pred HhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 309 ESMLVE-PD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 309 ~~m~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
++|... |+ ....-.+..+|...|-.++|...-+-+....|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 877621 22 34445566889999999999887766655556654
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=12 Score=39.72 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 043362 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN--PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227 (516)
Q Consensus 150 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 227 (516)
+...-+....+...++.|..+-+ ..+.+++ ........+-+.+.|++++|...|-+...- .--.-+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHHHHHHhcCH
Confidence 34556666667666666665533 2333333 223344455556778888888777654321 1112356666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ-PGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
.+..+-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.++.+... + |.. -| ....+..+.+.+-+++|.-
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHHHHH
Confidence 67777777888888877653 3334568888888888888776665443 1 211 12 2345666677777888877
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 307 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
+-.+.. ........++ -..+++++|.+.++.+
T Consensus 485 LA~k~~--~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFK--KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhc--cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 776654 2333334333 3567788888876654
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.13 E-value=5.8 Score=40.23 Aligned_cols=150 Identities=17% Similarity=0.083 Sum_probs=105.5
Q ss_pred hCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
-.|+++.|..++..+++ ...+.++.-+.+.|..++|+++ .+|...-- ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 35788888887777763 2344555666677777777654 33332211 223567899999887765
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccch
Q 043362 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354 (516)
Q Consensus 275 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 354 (516)
.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+.....+.+.+|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 53 67789999999999999999999998764 256677777888888777777777766666553
Q ss_pred HHHhhHHHHcCChhHHHHHHHHH
Q 043362 355 VLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 355 ~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
.-.+|...|+++++.+++.+-
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHhc
Confidence 334677889999999887543
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.87 E-value=0.65 Score=27.81 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 320 WGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
|..|...|...|++++|+.++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666643
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.82 E-value=0.79 Score=27.44 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREM 139 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m 139 (516)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666777777777666663
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.40 E-value=6.6 Score=37.03 Aligned_cols=127 Identities=9% Similarity=0.030 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHH--cC----CHHHHHHHHcccCCCC-------chHHHHHHHHHHHcCC-
Q 043362 63 LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK--CG----SVDYGRKLFDQVPEKG-------LITWNAMISGYAQNGL- 128 (516)
Q Consensus 63 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~- 128 (516)
++....+++.+.+.|+..+.+++-+..-.... .. ....|..+|+.|++.- -.++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677889999999999888776664444433 22 3567888999987532 2456666544 3333
Q ss_pred ---hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043362 129 ---ATHVLELYREMKSLGVCPDAV--TFVGVLSSCAHLGA--HSVGLEVEQQIQANGFGSNPFLNNALIN 191 (516)
Q Consensus 129 ---~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~li~ 191 (516)
.+.+...|+.+...|+..+.. ..+.++..+..... ...+..+++.+.+.|++.....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 355677788888877766433 34444444333222 4467788888888888877777765543
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.38 E-value=0.72 Score=27.24 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 043362 71 CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR 102 (516)
Q Consensus 71 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 102 (516)
++.++.. |.+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4445554 667778888888888888888775
No 294
>PRK09687 putative lyase; Provisional
Probab=88.26 E-value=22 Score=33.23 Aligned_cols=228 Identities=14% Similarity=0.032 Sum_probs=137.0
Q ss_pred HHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCC
Q 043362 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH----SVGLEVEQQIQANGF 179 (516)
Q Consensus 104 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----~~a~~~~~~~~~~g~ 179 (516)
+++.+..+|....-..+.++...|. .++...+..+... +|...-...+.++++.|+. .++...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence 3444456666666666777777664 4455555555443 4555555667777777763 4556666655333
Q ss_pred CCchHHHHHHHHHHHhCCCH-----HHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043362 180 GSNPFLNNALINMYARCGNL-----KKARAIFDG-MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 253 (516)
.++..+-...+.+++..+.- ..+.+.+.. +..++...-...+.++.+.++ .+|+..+-.+.+ .+|...-.
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~ 177 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRN 177 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHH
Confidence 45666666666666665431 223333322 334566666667777777776 466777766665 34555555
Q ss_pred HHHHHHhccC-ChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043362 254 SVLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332 (516)
Q Consensus 254 ~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 332 (516)
..+.++.+.+ ..+.+...+..+.. .++..+-..-+.++++.|.. +|...+-+....++ .....+.+....|+
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 5566666543 23456666666653 45777777788888888884 45555444433344 33456777888888
Q ss_pred HHHHHHHHHHHhhcCCC
Q 043362 333 VELAELAFGKVIKLEPM 349 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~ 349 (516)
. +|...+.++.+..|+
T Consensus 251 ~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 251 K-TLLPVLDTLLYKFDD 266 (280)
T ss_pred H-hHHHHHHHHHhhCCC
Confidence 5 688888888776663
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.25 E-value=18 Score=32.27 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=16.1
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 328 KIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+..+++.+|+.+|+++....-+++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 456777888888888766554443
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.24 E-value=2 Score=35.85 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHhcC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 297 RAGQLNEALELIESML-VEPDGAVWGAL-LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+.++.+++..++..+. .+|.......+ ...+...|++.+|.++++.+.+..|..+..-..++.++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 4556666666666554 34443222222 12245566666666666666555554443333333333
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.20 E-value=26 Score=33.87 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEP----MNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
....+|..+...+++.|+++.|...+.++....+ ..+.....-+......|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999987652 13456666788889999999999998888763
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.75 E-value=8.3 Score=33.25 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCc------hHHHHHHHHHHHcCChhHHHHHHHHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------ITWNAMISGYAQNGLATHVLELYREM 139 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m 139 (516)
.+..+.+.|.+.|+.+.|.+.|.++.+..+ ..+-.+|....-.+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555555544321 23444444444455555554444443
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.58 E-value=2.4 Score=34.80 Aligned_cols=51 Identities=12% Similarity=0.019 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 555666666666666666665555555556666666666666666665543
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.58 E-value=5 Score=30.19 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456777777777788899999999999999999999999999998875433 24556766654
No 301
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.46 E-value=75 Score=38.38 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
..+|-......+..|.++.|....-.+.+..++ ..+...+......|+...|..+++...+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 678888999999999999999988887777643 5788899999999999999999999886654
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.32 E-value=1 Score=42.03 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=77.0
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-V-EPDGAVWGALLGACKIHKNV 333 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~g~~ 333 (516)
+-|.+.|.+++|+..|.... .+.| ++.++..-..+|.+..++..|+.=.+... . +.-...|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999998877 4466 88888888889999998887776555443 1 11234555555555667889
Q ss_pred HHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
.+|.+-++.+++++|++. .|-..|++.....++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhh
Confidence 999999999999999864 3444444444444443
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.12 E-value=4.8 Score=30.64 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+. ....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 356666777777788999999999999999999999999999999876443 33377766653
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.79 E-value=1.7 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777776665
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.76 E-value=21 Score=30.32 Aligned_cols=133 Identities=11% Similarity=0.157 Sum_probs=77.8
Q ss_pred HHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHc-CCHHHHHHHHcccC
Q 043362 32 VSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMTMYVKC-GSVDYGRKLFDQVP 109 (516)
Q Consensus 32 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~-g~~~~A~~~f~~~~ 109 (516)
++.++.+.+.+++|+...+..+++.+.+.|.+..-.++ +..++-+|.. +...|++.-.+. .-..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566677778888888888888888888876654443 4444444443 333333332111 01344555555553
Q ss_pred CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
..+..++..+...|++-+|+++.+..... +...-..++.+..+.++...-..+++...+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888887765321 222234456666666665555555555544
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.70 E-value=2 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
No 307
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.53 E-value=46 Score=34.08 Aligned_cols=179 Identities=11% Similarity=0.031 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 157 (516)
+..+|+.-++.-.+.|+.+.+.-+|++..-+- ...|--.+.-.-..|+.+-|-.++..-.+.-++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34577777887888888888888888765443 244555555555557777777766655544332222222222223
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH---HHHhcCCC--CCHhHHHHHHHHH-----Hhc
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR---AIFDGMPR--KTVVSWTAIIGGY-----GIH 227 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~m~~--~~~~~~~~li~~~-----~~~ 227 (516)
+-..|++..|..+++.+...- +.-+.+-..-+.+-.+.|+.+.+. +++....+ .+....+.+..-+ .-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 445678888888888887754 223333344455566677777766 33333321 1222222222222 224
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 261 (516)
++.+.|..++.++.+. .+++...|..++.-+..
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 5566666666666654 34455555555554433
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.08 E-value=3.3 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 322 ALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 355678899999999999999999999986
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.02 E-value=56 Score=34.64 Aligned_cols=89 Identities=15% Similarity=0.317 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRP-----DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
++.+++|.+.....+-| ........+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.+++++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHH
Confidence 45666666654433222 223345566677777777777777766631 3334433344557777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043362 306 ELIESMLVEPDGAVWGALLGACKIHK 331 (516)
Q Consensus 306 ~~~~~m~~~p~~~~~~~ll~~~~~~g 331 (516)
++.++ +-|...|..||.-+...-
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCc
Confidence 77765 358888888887766543
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.91 E-value=2.7 Score=39.42 Aligned_cols=85 Identities=18% Similarity=0.099 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 299 (516)
..-|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|..=......- -...+.+|.|.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 4569999999999999998776 456 8999999999999999988777655554421 123456666654
Q ss_pred -------CHHHHHHHHHhcC-CCCC
Q 043362 300 -------QLNEALELIESML-VEPD 316 (516)
Q Consensus 300 -------~~~~A~~~~~~m~-~~p~ 316 (516)
+..+|.+=.+... .+|+
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 4555554444433 4565
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.66 E-value=23 Score=29.76 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=10.8
Q ss_pred HHHHcCCHHHHHHHHcccCCC
Q 043362 91 MYVKCGSVDYGRKLFDQVPEK 111 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~ 111 (516)
.+.+.|++++|..+|+.+.+.
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555555443
No 312
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.43 E-value=30 Score=31.00 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHhHHhcCCCC-CHHHHHHHH---HHHHhcCCHHHHHHHHHhcC---CCCCHHHHHH---HHH--HHHh-
Q 043362 263 GLTDKGLEYFYGMKNKYGLQP-GPEHYTCMV---DLLGRAGQLNEALELIESML---VEPDGAVWGA---LLG--ACKI- 329 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li---~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~---ll~--~~~~- 329 (516)
.++++|+..|+..-+-|.-.- +...--|++ +.-+..|++.+|.++|++.. ...+..-|.. ++. .|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 445555555555543222111 122222332 33346788899999988765 2222222322 221 1322
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccc
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
..|.-.+...+++-.+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 367777888889989999864433
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.32 E-value=0.7 Score=38.23 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=53.5
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHH
Q 043362 53 LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132 (516)
Q Consensus 53 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 132 (516)
++..+.+.+........++.+.+.+...+....+.|+..|++.++.++..++++....-| ...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd---~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD---LDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS----CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccC---HHHHHHHHHhcchHHHH
Confidence 455666667777777777777776655667788888888888877777777777443322 23455555555666666
Q ss_pred HHHHHHH
Q 043362 133 LELYREM 139 (516)
Q Consensus 133 ~~~~~~m 139 (516)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555543
No 314
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.96 E-value=30 Score=30.63 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
..+|-+.--+...|+++.|.+.|+...+....-+ .+...-.-++--.|+++.|.+=+...-+.-.-.|-...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 4555555555666666666666666665422111 22111111233346666665544444332112222222322221
Q ss_pred HHhcCCHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------ccchHHHhhHHHHcCC
Q 043362 295 LGRAGQLNEALE-LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN-------TGYYVLLSNIYSEARN 366 (516)
Q Consensus 295 ~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 366 (516)
+.-+..+|.. +.++.. ..|..-|...|..+-- |++. .+.+++++.+...++ ..+|.-|+.-|...|.
T Consensus 178 --~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2223444443 233332 3344555554444321 1111 122333333322222 3578888888999999
Q ss_pred hhHHHHHHHHHHhCC
Q 043362 367 LDGIMRVRMMMRERR 381 (516)
Q Consensus 367 ~~~a~~~~~~m~~~~ 381 (516)
.++|..+|+.....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876543
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.81 E-value=11 Score=32.86 Aligned_cols=72 Identities=8% Similarity=0.059 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL--QPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A 304 (516)
+|.+.|-++...+.--++.....|...|. ..+.+++.+++.+..+-+.- .+|+..+.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44455544444443333333333333333 34555555555544432211 23455555555555555555544
No 316
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.75 E-value=79 Score=35.32 Aligned_cols=254 Identities=7% Similarity=-0.046 Sum_probs=114.4
Q ss_pred HHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 043362 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182 (516)
Q Consensus 103 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 182 (516)
.+...+..++...--..+..+.+.+. .++...+.+.... +|...-...+.++...+........+..+++. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444455555555555555555554 3344444444432 33333333334443332111111222223322 35
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
..+-.+.++++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543211 12234444556666555556666665544322 11121 234444545555555555
Q ss_pred CChHH-HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 263 GLTDK-GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341 (516)
Q Consensus 263 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 341 (516)
+..+. +...+..+.. .++...-...+.++...|..+.+...+..+...++..+-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 2333334332 345666666777777777655443334333334555555555666665554 33444444
Q ss_pred HHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 342 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.+++ +| +...-...+.++.+...-..+...+....
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4442 22 22344444555554322334444444443
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.69 E-value=12 Score=32.77 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN---GFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 129 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
-+.|.+.|-++...+.--++.....+. .|....+.+++.+++-+..+. +-.+|+.++.+|++.|-+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 356777777776665444444433333 344466777787777777662 23566777777888888777777663
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.55 E-value=39 Score=31.60 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 216 SWTAIIGGYGIHGHG---EVAVQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 216 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
+...++.+|...+.. ++|..+++.+... -|+ ...+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 444555555555543 3455555555443 222 334444555555567777777777777753
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.40 E-value=18 Score=27.56 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 164 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
.++|..+-+.+...+-. ...+--.=+..+...|++++|..+.+...-||...|-++-.. +.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45555555555544321 222222334446678999999999999988999999877553 567777777777777776
Q ss_pred CCCCCHHHHH
Q 043362 244 GIRPDGTAFV 253 (516)
Q Consensus 244 g~~p~~~t~~ 253 (516)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.00 E-value=18 Score=27.47 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 043362 63 LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 63 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 142 (516)
-++|..+-+.+...+ .....+--.-+..+...|++++|..+.+.+.-||++.|-+|-. .+.|...++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 345555555544433 1122233333445667899999999999988888888877754 4667777777777777766
Q ss_pred CCCCCHHHHHH
Q 043362 143 GVCPDAVTFVG 153 (516)
Q Consensus 143 g~~p~~~t~~~ 153 (516)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 455555543
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.76 E-value=2.9 Score=23.91 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=14.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
..++...|+.++|...|+++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34445555666666666666555554
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.36 E-value=3.4 Score=23.80 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666655
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.19 E-value=8.4 Score=29.03 Aligned_cols=60 Identities=7% Similarity=-0.071 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 30 EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 30 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
++.+-++.+......|++....+.|+||.+.+|+..|.++++-+.... ..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 455555666666778888888888888888888888888887665221 223345555543
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=13 Score=34.70 Aligned_cols=98 Identities=11% Similarity=0.211 Sum_probs=69.9
Q ss_pred cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043362 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247 (516)
Q Consensus 177 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 247 (516)
.|.+....+...++..-.....++++...+-++... ...+|-.++ ..-++++++.++..=...|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 345555666666776666677788888777666521 223333332 2345778888888888889999
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 248 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|..++..++..+.+.+++.+|.++.-.|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888887776654
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.58 E-value=29 Score=28.72 Aligned_cols=66 Identities=3% Similarity=-0.103 Sum_probs=35.7
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc-hHHHHHHHHHHH
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQ 125 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~ 125 (516)
...+.+.+..++..+.-.- +.....-..-...+.+.|++++|.++|+++.+... ..|..-+.+++-
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3566666666666554432 11222222333446677888888888888776553 244444444433
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.27 E-value=29 Score=35.58 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=68.3
Q ss_pred HHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
...+.|+++.|.++-.+. .+..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+....+
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 344678888887775443 3456788888888888888888888876543 45666677777776665555
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
-....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555522 22334466678888887777654
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.23 E-value=0.63 Score=38.50 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=50.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 233 (516)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.+..++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666677777777777666556677788888888888776777776663322 3333455555556666666
Q ss_pred HHHHHH
Q 043362 234 VQLFDE 239 (516)
Q Consensus 234 ~~~~~~ 239 (516)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555554
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.07 E-value=4.2 Score=24.76 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3555666666666666666666666543
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.64 E-value=21 Score=35.41 Aligned_cols=136 Identities=8% Similarity=-0.012 Sum_probs=78.6
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
..|++..|.+-+....+.+.-.|+.. ......+...|.++.+...+.... ......+-..++......|+.++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34666655554444444333334333 333344556777777777766543 23445666777777777788888888
Q ss_pred HHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 043362 339 AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400 (516)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 400 (516)
..+.|+..+-.++......+..-...|-++++...++.+...+.+ ...-|+..-+....|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~ 438 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYF 438 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceec
Confidence 887777655444444444444455667777888777777554332 233355444443344
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.49 E-value=22 Score=33.04 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 230 GEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSH--AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 230 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
..+|+.+|+.... ..+--|..+...+++.... ......-.++.+.+...++-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1233344444444444332 112222233333444444445555566666666666666666666
Q ss_pred HHHhcC----CCCCHHHHHHHHHHHHhcCCHH
Q 043362 307 LIESML----VEPDGAVWGALLGACKIHKNVE 334 (516)
Q Consensus 307 ~~~~m~----~~p~~~~~~~ll~~~~~~g~~~ 334 (516)
+++... ..-|...|..+|..-...||..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 655443 1124445555555555555443
No 331
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=80.43 E-value=35 Score=28.98 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=64.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC--CHHHHHHHHhcCC
Q 043362 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--NLKKARAIFDGMP 210 (516)
Q Consensus 133 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~ 210 (516)
++.++.+.+.+++|+...+..++..+.+.|.+..-.++ +..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34455555667777777777777777777765544333 33333333322222221111110 1223333444332
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
..+..++..+...|++-+|+++.++.... +...-..++.+..+.++...-..+++-..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23455566677777777777777664221 11122334555555555544444444443
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.30 E-value=12 Score=32.00 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
+++|...|+++.+.+|++. .|..-+.+.. .|-+++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 5667777788888899875 5655555543 56677777766654
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=11 Score=35.03 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=65.6
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC-Cc-----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 043362 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GL-----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150 (516)
Q Consensus 77 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 150 (516)
|.+....+...++..-....+++.+...+-++... +. .+-.+.++.+. .-++++++.++..=++-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 33444445555665555566777777776665432 10 11122232222 2356788888887788888889999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQANG 178 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g 178 (516)
+..+|+.+.+.+++..|.++.-.++...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9888888888888888888777776643
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.21 E-value=4.6 Score=22.08 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 320 WGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44445555556666666666666555544
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.58 E-value=57 Score=30.34 Aligned_cols=57 Identities=9% Similarity=0.147 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 186 NNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 186 ~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
.+.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345566778888888888887776533 556777888888888887777777776643
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.26 E-value=11 Score=28.76 Aligned_cols=60 Identities=7% Similarity=-0.104 Sum_probs=36.2
Q ss_pred HHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 30 EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 30 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
+...-++.+....+.|++....+.|+||.+.+++..|.++++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 344445555566677888888888888888888888888887665432 233335655544
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.25 E-value=45 Score=29.01 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=61.1
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhcCCCCC--HHHHHHHHHHH
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY-----TCMVDLLGRAGQLNEALELIESMLVEPD--GAVWGALLGAC 327 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~ 327 (516)
+...+...+++++|...++..... |....+ -.|.......|.+|+|+..++... .++ ......-...+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHH
Confidence 345667788888888888776632 222223 234567778899999999998764 222 11222233668
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC
Q 043362 328 KIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
...|+.++|...|++.++.+++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 8899999999999999887643
No 338
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.63 E-value=12 Score=24.74 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=34.8
Q ss_pred hHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCC
Q 043362 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG 429 (516)
Q Consensus 354 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 429 (516)
...++-++.+.|++++|.++.+.+.+. .|...++......+.++|++.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788999999999999999998753 23444444444567777777774
No 339
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.63 E-value=55 Score=29.09 Aligned_cols=158 Identities=11% Similarity=-0.016 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCchHHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNNALINM 192 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~ 192 (516)
.+||-|.--+...|+++.|.+.|+...+... ....+...-.-++.--|++..|.+-+.+.-+.. -.|-...|--|+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 4566565556666666666666666555321 112222222222333455555554444333322 1122222222211
Q ss_pred HHhCCCHHHHHH-HHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHhccCC
Q 043362 193 YARCGNLKKARA-IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-------DGTAFVSVLSACSHAGL 264 (516)
Q Consensus 193 y~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~t~~~ll~a~~~~g~ 264 (516)
..-+..+|.. +.++....|..-|..-|-.|---.-.+ ..+++++..- -.. -..||--+..-+...|+
T Consensus 178 --~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1123333332 233333444444544444332211111 1223333221 111 13467778888888888
Q ss_pred hHHHHHHHHHhHHh
Q 043362 265 TDKGLEYFYGMKNK 278 (516)
Q Consensus 265 ~~~a~~~~~~~~~~ 278 (516)
.++|..+|+-....
T Consensus 253 ~~~A~~LfKLaian 266 (297)
T COG4785 253 LDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877754
No 340
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.62 E-value=86 Score=31.33 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043362 115 TWNAMISGYAQ---NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162 (516)
Q Consensus 115 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 162 (516)
.+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455555555 4788888888888888887776555554554444433
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.29 E-value=5.7 Score=21.58 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=10.7
Q ss_pred HHHHHHHhCCCHHHHHHHHh
Q 043362 188 ALINMYARCGNLKKARAIFD 207 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~ 207 (516)
.|...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555555555555543
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.26 E-value=22 Score=35.28 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=82.8
Q ss_pred HhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043362 225 GIHGHGEVAV-QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 225 ~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 303 (516)
...|+.-.|- +++.-+....-.|+.+.+.+.| ..+.|.++.+.+.+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456665554 4555566655566666555544 5678999999988877754 344566778888999999999999
Q ss_pred HHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 304 ALELIESMLV--EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 304 A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
|..+-..|.. -.+......-.......|-++++.-.++++..+.|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9998887761 1233333333334456677888988899888877643
No 343
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.91 E-value=1.1e+02 Score=31.88 Aligned_cols=272 Identities=11% Similarity=0.083 Sum_probs=134.3
Q ss_pred HHHHHHHHcccCCCC-chHHHHHHH----H-HHHcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 043362 98 VDYGRKLFDQVPEKG-LITWNAMIS----G-YAQNGLATHVLELYREMKS-------LGVCPDAVTFVGVLSSCAHLG-- 162 (516)
Q Consensus 98 ~~~A~~~f~~~~~~~-~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-- 162 (516)
...|.+.++...+.+ +..-..+.. + +....+.+.|+..|+...+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777766554 222222222 2 4456678888888888766 44 2223444555555432
Q ss_pred ---ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-CCCHHHHHHHHhcCCCC-CHhHHHHHHHHHH----hcCCHHHH
Q 043362 163 ---AHSVGLEVEQQIQANGFGSNPFLNNALINMYAR-CGNLKKARAIFDGMPRK-TVVSWTAIIGGYG----IHGHGEVA 233 (516)
Q Consensus 163 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~----~~g~~~~A 233 (516)
+.+.|..++.+..+.|. |+....-..+..... ..+...|.++|...... .+.+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 56678888888888773 333333222222222 23567788888776543 2222222222222 23357788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH---Hh----cCCHHHHHH
Q 043362 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL---GR----AGQLNEALE 306 (516)
Q Consensus 234 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~----~g~~~~A~~ 306 (516)
..++++..+.| .|-..--...+..+.. +..+.+...+..+.+. +.+--...-..+.+.. .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888777 3332333333444444 6666655555555432 2221111111111111 00 123444555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc---CChhHHHHHHHHHHh
Q 043362 307 LIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA---RNLDGIMRVRMMMRE 379 (516)
Q Consensus 307 ~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 379 (516)
++.+....-+......|...|.. ..+.+.|...+.+..... ......+..++... ..+..|.++++...+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 55554433344444444433322 235666666666665544 33444555555332 115666666666554
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.69 E-value=99 Score=32.77 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCHHHHHHHHcccC---CCCchHHHHHHHHHHHcCC-------hhHHHHHHHHHHHC
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVP---EKGLITWNAMISGYAQNGL-------ATHVLELYREMKSL 142 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 142 (516)
++|-.+.|+|++++|.++..... +.....+-..+..|..+.+ -++...-|++....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 46667778888888888882222 2223445556666655432 23444455555544
No 345
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.68 E-value=53 Score=28.02 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 124 AQNGLATHVLELYREMKSLGVCPDAV-TFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
++.|..++|+.-|..+.+.|...-++ ..--......+.|+...|...|.++-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 45556666666666666554322111 111111223344555555555555444
No 346
>PRK10941 hypothetical protein; Provisional
Probab=73.33 E-value=16 Score=33.87 Aligned_cols=61 Identities=18% Similarity=0.081 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+.|-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++.-.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4556677889999999999999999999998877778888899999999998877776543
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.10 E-value=3.9 Score=23.31 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=24.1
Q ss_pred chHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 353 YYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 353 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++..++.+|.+.|++++|.++++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998764
No 348
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.93 E-value=2.6 Score=39.56 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=68.5
Q ss_pred hcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 297 RAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
..|.+++|.+.|.... ..| ....|.--.+++.+.+....|++-+....+++|+...-|-.-..+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3466888888777665 333 45555555677788888888888888888999988888888888888889999999999
Q ss_pred HHHHhCCCCCC
Q 043362 375 MMMRERRLKKD 385 (516)
Q Consensus 375 ~~m~~~~~~~~ 385 (516)
....+.++...
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88888777544
No 349
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.71 E-value=50 Score=29.90 Aligned_cols=55 Identities=9% Similarity=-0.054 Sum_probs=47.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..+...|++-++++...+++...|.|..+|..-+.+.+..=+.++|..=|....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 4455678999999999999999999999999999998888888888888887765
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.46 E-value=1.1e+02 Score=30.50 Aligned_cols=207 Identities=10% Similarity=-0.035 Sum_probs=106.4
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCCChhh--HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHHcCC
Q 043362 22 YVLNSLVSEAVSLFGKMREQGVEINSVT--MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS--VGNCLMTMYVKCGS 97 (516)
Q Consensus 22 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~ 97 (516)
-++.|+.+- ++.+.+.|..|+... -.+.+..++..++.+ +.+.+++.|..|+.. ...+.+...++.|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 345566544 444455677666432 233444455566655 445556667555432 12334556678899
Q ss_pred HHHHHHHHcccCCCCc----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHH
Q 043362 98 VDYGRKLFDQVPEKGL----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT--FVGVLSSCAHLGAHSVGLEVE 171 (516)
Q Consensus 98 ~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~ 171 (516)
.+.+..+++.-...+. .-+ +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L- 154 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL- 154 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-
Confidence 9988888876432211 112 233334455655 34555566676665322 12344455566776554444
Q ss_pred HHHHHcCCCCchH--HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043362 172 QQIQANGFGSNPF--LNNALINMYARCGNLKKARAIFDGMPRKTVVS---WTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246 (516)
Q Consensus 172 ~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 246 (516)
.+.|..++.. ...+-+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.+-+.+.|..
T Consensus 155 ---l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad 227 (413)
T PHA02875 155 ---IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGAD 227 (413)
T ss_pred ---HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcC
Confidence 4444433321 12233444556788887777776554443221 123333334556553 44445566766
Q ss_pred CCH
Q 043362 247 PDG 249 (516)
Q Consensus 247 p~~ 249 (516)
++.
T Consensus 228 ~n~ 230 (413)
T PHA02875 228 CNI 230 (413)
T ss_pred cch
Confidence 654
No 351
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.94 E-value=25 Score=30.63 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=31.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043362 121 SGYAQNGLATHVLELYREMKSLGVCPDA-----VTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178 (516)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 178 (516)
.-+.++|++++|..-|.+.+.. +++.. +.|..-..+..+++.++.|..-....++.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~ 164 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN 164 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC
Confidence 3456678888888877777664 23322 223333334455555666655555555543
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.53 E-value=11 Score=21.65 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKS 141 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 141 (516)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777766554
No 353
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.20 E-value=8.7 Score=37.97 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=56.7
Q ss_pred HHhcCCHHHHHHHHHhcC-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHH
Q 043362 295 LGRAGQLNEALELIESML-VEPDGAVW-GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~-~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 372 (516)
+...+.++.|..++.++. .+|+-..| ..=..++.+.+++..|..-+.++++.+|.....|+.-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 344556666666666655 45653333 2223566777778888888888888888777777777778888888888877
Q ss_pred HHHHHH
Q 043362 373 VRMMMR 378 (516)
Q Consensus 373 ~~~~m~ 378 (516)
.|+...
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 776554
No 354
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.07 E-value=46 Score=25.74 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043362 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140 (516)
Q Consensus 61 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 140 (516)
...++|..+.+.+...+ .....+--.-+..+.+.|++++|...=.....||++.|-+|- -.+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 44567777777776665 233334444455667788888886665666677888886664 457777777777777776
Q ss_pred HCCCCCCHHHH
Q 043362 141 SLGVCPDAVTF 151 (516)
Q Consensus 141 ~~g~~p~~~t~ 151 (516)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 654 3444444
No 355
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.93 E-value=10 Score=33.88 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=36.6
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 313 VEPDG-AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 313 ~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
..|++ .-|+.=+-.+.+.++++.+..--++++++.|+.......++........+++|...+.+..
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 44544 2333334444455556666666666666666665556666666666666666666655553
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.57 E-value=48 Score=25.68 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
..++|..+.+.+...+- ....+--.-+..+...|++++|...=.....||...|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46677777777776653 233333344455667788888855555556677777776543 466777777777776655
Q ss_pred cC
Q 043362 243 SG 244 (516)
Q Consensus 243 ~g 244 (516)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 357
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.10 E-value=1.5e+02 Score=31.08 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhcCC
Q 043362 333 VELAELAFGKVIKLEP 348 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p 348 (516)
+..|.+.+++..+.+.
T Consensus 525 ~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 525 LHLAKRYYDQASEEDS 540 (552)
T ss_pred hHHHHHHHHHHHhcCc
Confidence 6677777777766554
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.02 E-value=1.4e+02 Score=30.36 Aligned_cols=169 Identities=9% Similarity=0.077 Sum_probs=79.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 259 (516)
|....-++++.++..-.+.-.+.+-.+|. ..+-..+..++.+|.++ ..++-..+++++.+. ..|.+.+.--+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 33344455555555555554444444443 22445555666666665 445556666666653 22333333333333
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCCHHHHHHHHHHHHh
Q 043362 260 SHAGLTDKGLEYFYGMKNKYGLQPG------PEHYTCMVDLLGRAGQLNEALELIESML----VEPDGAVWGALLGACKI 329 (516)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~ 329 (516)
...++...+..+|.++..+ +-|. .+.|..|+..- ..+.+.-..+...+. ...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3335666666666665532 2221 12344443321 123333333333332 11123334444455566
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
..++.+|++++..+++.+..+..+...+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 6666666666666666554443333333
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.92 E-value=59 Score=30.05 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=52.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLK--SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR- 297 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 297 (516)
|++++..+++.+++...-+--+ +.++|...- .-|-.|++.+.+..+.++-..-... .-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6677777887777765444332 224444333 3344577788877777777666654 112233346666666543
Q ss_pred ----cCCHHHHHHHHHh
Q 043362 298 ----AGQLNEALELIES 310 (516)
Q Consensus 298 ----~g~~~~A~~~~~~ 310 (516)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5888888888744
No 360
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.49 E-value=31 Score=27.97 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhh-cCCCC-ccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 331 KNVELAELAFGKVIK-LEPMN-TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 331 g~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+..+++.+++.+.+ -.|.. ......|+-++.+.++++.+.++.+...+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 356667777777775 33432 23445667778888888888888877764
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.19 E-value=48 Score=24.55 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 234 (516)
.+++..+.+.|+- +....+.+-.+-...|+.+.|.++++.++ +..-.+..+++++...|+.+-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3455555555532 22222322222234577777777777777 77777777777777777655443
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.11 E-value=18 Score=36.87 Aligned_cols=96 Identities=22% Similarity=0.135 Sum_probs=63.6
Q ss_pred cCChHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 262 AGLTDKGLEYFYGMKNKYGLQPG--PEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAE 337 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~ 337 (516)
.|+...|...+..+.. ..|- -.....|.+.+.+.|...+|-.++.+.. ....+.++.++..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4667777777666653 2332 2233455666667777777777766544 2234566777788888888888888
Q ss_pred HHHHHHhhcCCCCccchHHHhhH
Q 043362 338 LAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
+.|+++++.+|+++..-..|..+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHH
Confidence 88888888888887666555443
No 363
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.02 E-value=59 Score=25.32 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
-|..++.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467778888888888888888887766
No 364
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.70 E-value=2.4e+02 Score=31.61 Aligned_cols=267 Identities=12% Similarity=-0.013 Sum_probs=152.9
Q ss_pred HHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH-HHHHHHHcccC
Q 043362 31 AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV-DYGRKLFDQVP 109 (516)
Q Consensus 31 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~f~~~~ 109 (516)
++..+..++. .||...-...+.++...+..+ +...+..+++ .++..+-...+.++.+.+.. .....+...+.
T Consensus 622 ~~~~L~~~L~---D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~ 694 (897)
T PRK13800 622 SVAELAPYLA---DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG 694 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc
Confidence 4444444443 567777677777777776544 4444444442 56666666776666655432 11222223334
Q ss_pred CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 043362 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189 (516)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 189 (516)
.+|...-...+..+...+..+ .. .+-++.. .+|...-...+.++...+..+. + ..+. -.++..+-...
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~~~VR~~a 762 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---V-AGAA---TDENREVRIAV 762 (897)
T ss_pred CCCHHHHHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCCHHHHHHH
Confidence 455544444555555443221 22 2333332 3566555566666666654432 2 1222 24567777777
Q ss_pred HHHHHhCCCHHH-H-HHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 043362 190 INMYARCGNLKK-A-RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267 (516)
Q Consensus 190 i~~y~~~g~~~~-A-~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 267 (516)
+.++...+..+. + ..+..-+.++|...-.+.+.++.+.|....+...+..+.. .+|...-...+.++...+. ++
T Consensus 763 a~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~ 838 (897)
T PRK13800 763 AKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DV 838 (897)
T ss_pred HHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cc
Confidence 777777776443 2 2333444577888888889999999887665555555554 3566666677888888776 44
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH
Q 043362 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324 (516)
Q Consensus 268 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 324 (516)
+...+..+.+ .|+..+-...+.++.+.+.-..+...+......+|..+-....
T Consensus 839 a~~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 839 AVPALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred hHHHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5566655554 4677777777888887643445666666655455655443333
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.43 E-value=22 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=23.8
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGP-EHYTCMVDLLGRAGQLNEALEL 307 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 307 (516)
+....++|+..|....++..-.|+. .+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666555442222221 2445556666666666655544
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.23 E-value=1.5e+02 Score=29.22 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHhHHh
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDGT--AFVSVLSACS--HAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~ 278 (516)
+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34678888999999888876 555554 3444445554 356778888888877653
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.17 E-value=25 Score=31.15 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+..+..+.+.+++++|+...+.-. .+| |...-..++..++..|++++|..-++-.-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3455667778888888888776543 556 456667788889999999999988888888888654
No 368
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.77 E-value=56 Score=26.17 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
+..+-+..+....+.|++...-..+.||.+.+++..|.++|+-++.+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 55566666777778999999999999999999999999999988764 3344445666554
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.55 E-value=36 Score=30.36 Aligned_cols=58 Identities=16% Similarity=0.042 Sum_probs=37.3
Q ss_pred HHHHHHhcCCHH-------HHHHHHHHHhhcC--C----CCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 323 LLGACKIHKNVE-------LAELAFGKVIKLE--P----MNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 323 ll~~~~~~g~~~-------~A~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+.-.|...|+.+ .|...|++..+.+ | +.......++.++.+.|+.++|.+.|.++...
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334455555543 3444454444332 2 12345667888999999999999999998754
No 370
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.53 E-value=1.2e+02 Score=32.29 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=32.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
..+++.|.++.-.++++-. ..+.+-.-.+|+.+|.+..+.|.++.|+..
T Consensus 352 ~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 3456666666655555422 234455567889999999999999988754
No 371
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.49 E-value=30 Score=29.64 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
+++|+.-|++++.++|+...++..++++|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5667777888888999999999999999987653
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.12 E-value=19 Score=22.73 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.55 E-value=58 Score=25.36 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKS 141 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 141 (516)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588888899999999999999988876
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.49 E-value=35 Score=29.75 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
|+..++..++.++...|+.++|.+..+++...-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455555555555555555555555555554444
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.37 E-value=20 Score=22.66 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=13.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC
Q 043362 119 MISGYAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~ 142 (516)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555566666666666555543
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.81 E-value=91 Score=25.77 Aligned_cols=77 Identities=6% Similarity=0.106 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccC---------CCCchHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVP---------EKGLITWNAMISGYAQNGL-ATHVLELYREMKSLGVCPDAVTFVGV 154 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 154 (516)
.|.+++-.+..+.+.-...+++.+. ..+-.+|++++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445544444455544444444432 1223467777776655544 33356667777766667777777777
Q ss_pred HHHHHhc
Q 043362 155 LSSCAHL 161 (516)
Q Consensus 155 l~~~~~~ 161 (516)
+.+|.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766543
No 377
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.45 E-value=1.2e+02 Score=27.06 Aligned_cols=123 Identities=20% Similarity=0.162 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC----CHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP----GPEHYTCMV 292 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li 292 (516)
.+.-++.+.+.+...+|+...++-.+.. +.|.-+-..++..++-.|++++|..-++... .+.| ....|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 4455777888889999999888877752 3355566678888999999999988777665 2344 345566665
Q ss_pred HHHHhcCCHHHHH-HHHHhc--C---CCCCHHHHHH-HHHHHHh--cCCHHHHHHHHHHHhhcCCCCc
Q 043362 293 DLLGRAGQLNEAL-ELIESM--L---VEPDGAVWGA-LLGACKI--HKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 293 ~~~~~~g~~~~A~-~~~~~m--~---~~p~~~~~~~-ll~~~~~--~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+.- .+. ++|..- + ..| ...|-. |+.+..- .|.-+.+..+-++..+..|...
T Consensus 80 r~e-------a~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RCE-------AARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 432 222 234322 1 113 334444 4444332 2344445555566666655443
No 378
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.32 E-value=1.4e+02 Score=27.59 Aligned_cols=187 Identities=11% Similarity=0.091 Sum_probs=115.3
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHH---cCC--CCchHHHHHHHHHHHhC
Q 043362 125 QNGLATHVLELYREMKSLGVCPDAV---TFVGVLSSCAHLGAHSVGLEVEQQIQA---NGF--GSNPFLNNALINMYARC 196 (516)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~---~g~--~~~~~~~~~li~~y~~~ 196 (516)
+..++++|+.-|++..+..-.-... .+..++....+.+++++....+.+++. +.+ ..+....|++++.-+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457899999999987642222223 445567888999999999988887754 111 22345678888887777
Q ss_pred CCHHHHHHHHhcCC-----CCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----C-------HHHHHHHH
Q 043362 197 GNLKKARAIFDGMP-----RKTVV----SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP----D-------GTAFVSVL 256 (516)
Q Consensus 197 g~~~~A~~~~~~m~-----~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~-------~~t~~~ll 256 (516)
.+.+--.++|+.-. .+|.. +-+.+...|...|.+.+..++++++..+-..- | ...|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 77766666655332 12222 23456667777888888888888876531111 1 13455666
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHHhcCCHHHHH-HHHHhc
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM----VDLLGRAGQLNEAL-ELIESM 311 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~-~~~~~m 311 (516)
..|....+-..-..++++......--|.+.....+ ..+..+.|++++|. ++|+..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 77777777777777777665443445555443322 23445667777765 344443
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.24 E-value=19 Score=27.02 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..+++.++.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445556667777777777777777777777777777666544
No 380
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.60 E-value=2.5e+02 Score=30.13 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMPRKTV 214 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 214 (516)
..-..|+..|...+++++|...+-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3444589999999999999999988876654
No 381
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.98 E-value=16 Score=20.39 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 331 KNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
|+.+.+..+|++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567777788888777776666655544
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.21 E-value=2.6e+02 Score=29.61 Aligned_cols=188 Identities=12% Similarity=0.053 Sum_probs=100.0
Q ss_pred CChhhHHHHHHHhhcCCCchHHHHHHHHHHH-hCCCCCh--hHHHHHHHHHH-HcCCHHHHHHHHcccC----CCCc---
Q 043362 45 INSVTMLCLLPICVDPGYLWLGMCCHCICVK-FGLDLDF--SVGNCLMTMYV-KCGSVDYGRKLFDQVP----EKGL--- 113 (516)
Q Consensus 45 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~--~~~~~ll~~~~-~~g~~~~A~~~f~~~~----~~~~--- 113 (516)
.+...|..++.. |.+.++.+.+ ..++|.. .+.--+...|. ...+++.|+..+++.. +.+.
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 445566666653 6677777774 3344433 34555666665 6778999999888652 1221
Q ss_pred --hHHHHHHHHHHHcCChhHHHHHHHHHHHC--C--CCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcC---CCCch
Q 043362 114 --ITWNAMISGYAQNGLATHVLELYREMKSL--G--VCPDAVTFVGV-LSSCAHLGAHSVGLEVEQQIQANG---FGSNP 183 (516)
Q Consensus 114 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~g---~~~~~ 183 (516)
..-..++..+.+.+... |+..+++..+. + ..+-...|..+ +..+...++...|.+.++.+.... -.+..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 23345566677766655 88888876653 1 11222233333 222223368888888887776632 23334
Q ss_pred HHHHHHHHHHH--hCCCHHHHHHHHhcCC-------------CCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 043362 184 FLNNALINMYA--RCGNLKKARAIFDGMP-------------RKTVVSWTAIIGG--YGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 184 ~~~~~li~~y~--~~g~~~~A~~~~~~m~-------------~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~ 242 (516)
.++-.++.+.. +.+..+++.+..+.+. .+-..+|..++.. +...|+++.+...++++..
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444332 3344455555544331 1123445555443 3445666666665555543
No 383
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=56.90 E-value=1.5e+02 Score=30.47 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 187 NALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 357778888899999988888886
No 384
>PRK10941 hypothetical protein; Provisional
Probab=56.80 E-value=81 Score=29.30 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 289 TCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
+.+-.+|.+.++++.|..+.+.+. ..| |..-+.--.-.|.+.|.+..|..-++..++.-|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 445567788888888888888876 456 46667777777888899999999888888888887744
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.55 E-value=1.1e+02 Score=25.22 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=35.9
Q ss_pred CHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 043362 213 TVVSWTAIIGGYGIHGH-GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 263 (516)
+..+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++.+|.+..
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 45677777777755554 3346677788877777888888888888877653
No 386
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.32 E-value=1.8e+02 Score=27.12 Aligned_cols=134 Identities=12% Similarity=0.061 Sum_probs=68.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCchHHHHH
Q 043362 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVT-------FVGVLSSCAHLGAHSVGLEVEQQ----IQANGFGSNPFLNNA 188 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~----~~~~g~~~~~~~~~~ 188 (516)
.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|+...-.+.... |....-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3444566677777777777776666555433 33445556666654443333222 111111223344455
Q ss_pred HHHHHHhC-CCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCCHHHHHHHHH----HHHHcCCCCCHHHHH
Q 043362 189 LINMYARC-GNLKKARAIFDGMPR-----K----TVVSWTAIIGGYGIHGHGEVAVQLFD----EMLKSGIRPDGTAFV 253 (516)
Q Consensus 189 li~~y~~~-g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~ 253 (516)
|++.+... ..++.-.++.....+ + ....-..+|..+.+.|++.+|+.+.. ++.+..-+|+..+..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 55555432 234444444433221 0 11122346778888999998887654 444455566655543
No 387
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.26 E-value=1.8e+02 Score=28.92 Aligned_cols=188 Identities=16% Similarity=0.130 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCCChhH--HHHHHHHHHHcCCHHHHHHHHcccCCCCch--HHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 043362 69 CHCICVKFGLDLDFSV--GNCLMTMYVKCGSVDYGRKLFDQVPEKGLI--TWNAMISGYAQNGLATHVLELYREMKSLGV 144 (516)
Q Consensus 69 ~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 144 (516)
+.+.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+-+...+..|+.+.+..+++ .|.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCC
Confidence 3444556676665432 344556667788888777766654333321 11233445567777766544443 332
Q ss_pred CCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHH--HHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhH
Q 043362 145 CPDAV---TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL--NNALINMYARCGNLKKARAIFDGMPRK---TVVS 216 (516)
Q Consensus 145 ~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~ 216 (516)
..+.. .-.+.+...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-... |..-
T Consensus 93 ~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 168 (413)
T PHA02875 93 FADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCG 168 (413)
T ss_pred cccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Confidence 11110 0112333344556553 4445555665554321 223445556678887777776654322 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCChHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF---VSVLSACSHAGLTDKGL 269 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~ 269 (516)
++.+..+ +..|+.+ +.+.+.+.|..|+...- .+++......|..+-+.
T Consensus 169 ~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~ 219 (413)
T PHA02875 169 CTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR 219 (413)
T ss_pred CCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHH
Confidence 3333322 3345543 44455566666654321 23444334455554433
No 388
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.85 E-value=13 Score=29.93 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=25.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 259 (516)
..|.-..|-.+|++|++.|-+|| .|+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34566689999999999999998 566676654
No 389
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.32 E-value=1.7e+02 Score=27.26 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=49.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-
Q 043362 119 MISGYAQNGLATHVLELYREMKS--LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR- 195 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~- 195 (516)
=|.+++..|++.+++...-+--+ +.++|...-. -|-.|++.+....+.++-..-.+..-..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 36777888888887765444332 2344443333 333466777777766666555553222333446666666544
Q ss_pred ----CCCHHHHHHHH
Q 043362 196 ----CGNLKKARAIF 206 (516)
Q Consensus 196 ----~g~~~~A~~~~ 206 (516)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 47777777765
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.93 E-value=55 Score=28.54 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=38.0
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
......+.+......+.+.+.....|++.+|..++..+...|+.++|.+...++.
T Consensus 117 ~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 117 LARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3335555555555544444444557888888888888888888888888888775
No 391
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.78 E-value=3.3e+02 Score=29.76 Aligned_cols=215 Identities=11% Similarity=-0.043 Sum_probs=113.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHH-HHhCCCHHHHHHHHhcCC--------CCCHhHHHHHHH
Q 043362 159 AHLGAHSVGLEVEQQIQANGFGSNP-------FLNNALINM-YARCGNLKKARAIFDGMP--------RKTVVSWTAIIG 222 (516)
Q Consensus 159 ~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~-y~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~ 222 (516)
....++.+|..+..++...-..|+. ..+++|-.. ....|+++.|.++-+... ...++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3557888999888887764222221 123333221 234588888877655432 236677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHhccCC--hHHHHHHHHHhHHhcCCC-----CCHHHHHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL-----SACSHAGL--TDKGLEYFYGMKNKYGLQ-----PGPEHYTC 290 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-----~a~~~~g~--~~~a~~~~~~~~~~~~~~-----p~~~~~~~ 290 (516)
+..-.|++++|..+.++..+..-.-+...|.... ..+...|. ..+....|......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999888766542233333332221 23445663 233333444433321111 11233444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCC-HHHH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-cc-chHH---
Q 043362 291 MVDLLGRAGQLNEALELIESML-----VEPD-GAVW---GALLGACKIHKNVELAELAFGKVIKLEPMN-TG-YYVL--- 356 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-----~~p~-~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-~~-~~~~--- 356 (516)
+...+.+ ++.+..-..... ..|. ...+ ..|.......|++++|.....++..+-.++ +. .|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 333332222211 1232 1222 245677788999999999998887654222 11 2221
Q ss_pred --HhhHHHHcCChhHHHHHHHH
Q 043362 357 --LSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 357 --l~~~~~~~g~~~~a~~~~~~ 376 (516)
-.......|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 11222456777777766655
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.52 E-value=91 Score=23.16 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=25.7
Q ss_pred HcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHH
Q 043362 94 KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 132 (516)
..|+.+.|.++++.++ ++.-.|..+++++-..|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466777777777777 6667777777777666665544
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.23 E-value=2.4e+02 Score=27.73 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMPR------KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
..+.-+.+.|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++......-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567788889999999999998888542 1223455555555556777776666666554
No 394
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.13 E-value=80 Score=30.02 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML----VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~----~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
|.-=.+-|.+..++..|...|.+.. ..|| .+.|+.-..+-...|++..++.-..+++.++|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3334556778888999999887765 2343 667777777777789999999999999999999988888878887
Q ss_pred HHcCChhHHHHHHHH
Q 043362 362 SEARNLDGIMRVRMM 376 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~ 376 (516)
....++++|...-++
T Consensus 164 ~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 164 LELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777776666554443
No 395
>PRK12798 chemotaxis protein; Reviewed
Probab=51.95 E-value=2.5e+02 Score=27.80 Aligned_cols=179 Identities=18% Similarity=0.231 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHhcCCCC----CHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChH
Q 043362 196 CGNLKKARAIFDGMPRK----TVVSWTAIIGGY-GIHGHGEVAVQLFDEMLKSGIRPDG----TAFVSVLSACSHAGLTD 266 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~~----~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 266 (516)
.|+.++|.+.+..+... ....+-+|+.+- ....++.+|+++|++..-. -|-. ..+.--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58888888888777532 445566666554 3456788999999887652 3432 23333344567889999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHH-HHHHHHHh---cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 267 KGLEYFYGMKNKYGLQPGPEHYT-CMVDLLGR---AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 267 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 342 (516)
++..+-.....+|.-.|-...|. .++..+.+ .-..+.-..++..|...--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887777777666566443332 23333333 334455556666664222367888888888999999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHc-----CChhHHHHHHHHH
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEA-----RNLDGIMRVRMMM 377 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m 377 (516)
...+... ...-...+..|... ...+++.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9887633 23444455555432 3455555555444
No 396
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.63 E-value=31 Score=37.00 Aligned_cols=96 Identities=18% Similarity=0.331 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
+.++++.+.+.+.-.--| .++|..+.+.|-.+-|+.+.+.-..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 445666665554432222 234555566666666665554333221 22346788888887
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043362 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 307 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 346 (516)
.-.++ -|..+|..|......+|+.+-|+..|++....
T Consensus 665 ~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 665 AAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred HHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 77765 36778888888888888888888887776543
No 397
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.45 E-value=1.7e+02 Score=25.65 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=48.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhH--HHHHHHHHHhcCCHHH
Q 043362 157 SCAHLGAHSVGLEVEQQIQANGFGSN--PFLNNALINMYARCGNLKKARAIFDGMPRKTVVS--WTAIIGGYGIHGHGEV 232 (516)
Q Consensus 157 ~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~ 232 (516)
.+...+++++|..-++......-+.+ ..+--.|.......|.+++|...++....++-.+ -..-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 35555666666666665554311111 1112234455566677777777777666553222 2223445677777777
Q ss_pred HHHHHHHHHHcC
Q 043362 233 AVQLFDEMLKSG 244 (516)
Q Consensus 233 A~~~~~~m~~~g 244 (516)
|..-|++..+.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 777777766654
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.80 E-value=2.6e+02 Score=27.59 Aligned_cols=54 Identities=7% Similarity=-0.209 Sum_probs=32.8
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCCChh--hHHHHHHHh--hcCCCchHHHHHHHHHHHh
Q 043362 22 YVLNSLVSEAVSLFGKMREQGVEINSV--TMLCLLPIC--VDPGYLWLGMCCHCICVKF 76 (516)
Q Consensus 22 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~--~~~~~~~~a~~~~~~~~~~ 76 (516)
+...+++..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33667788888888888776 555444 233333333 2455667777777766554
No 399
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.51 E-value=55 Score=21.05 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=19.7
Q ss_pred HhCCCchHHHHHHHHhHHCCCCCChhhHHHHHH
Q 043362 23 VLNSLVSEAVSLFGKMREQGVEINSVTMLCLLP 55 (516)
Q Consensus 23 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 55 (516)
.+.|...++..++++|.+.|+.-+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666666666666555555555543
No 400
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=50.31 E-value=3.3e+02 Score=28.63 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 234 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
....+++...-.-.+.....-++..|.+.|..+.+.++.+.+-.+ - .....|..-+.-+.++|+.....
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~-~--~~~~~~g~AL~~~~ra~d~~~v~ 458 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR-L--LKEGRYGEALSWFIRAGDYSLVT 458 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-H--HHCCCHHHHHHHHHHCCCHHHHH
Confidence 333444443322334556667778888888888888887766543 1 11223334444444555544433
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.27 E-value=18 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=25.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043362 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 158 (516)
-..|.-..|-.+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446677899999999999999985 55666544
No 402
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.17 E-value=2.9e+02 Score=27.98 Aligned_cols=145 Identities=16% Similarity=0.053 Sum_probs=84.1
Q ss_pred HHHHHHHHcccCCCCc----------hHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCC--HH-----HHHHHHH-HH
Q 043362 98 VDYGRKLFDQVPEKGL----------ITWNAMISGYAQNGLATHVLELYREMKSLG-VCPD--AV-----TFVGVLS-SC 158 (516)
Q Consensus 98 ~~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~-----t~~~ll~-~~ 158 (516)
-|+|....++.++.+. .+...++..-.-.|++.+|++-...|.+.- -.|. .. ....++. -|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 3555555666666662 122233334456799999999999997642 1233 11 1222332 34
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH--------HHH--HHh
Q 043362 159 AHLGAHSVGLEVEQQIQANGFGSNPF--LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI--------IGG--YGI 226 (516)
Q Consensus 159 ~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l--------i~~--~~~ 226 (516)
...+.++.|+.-|....+.--..|.. .-..+.-.|.+.|+.++-.++++.+..+|..++..- +.+ ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 56678888888777776643333332 334566678888988888888888876654433221 111 124
Q ss_pred cCCHHHHHHHHHHHHH
Q 043362 227 HGHGEVAVQLFDEMLK 242 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~ 242 (516)
.+++.+|...+++-.+
T Consensus 458 qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLK 473 (629)
T ss_pred hccHHHHHHHHHHHHh
Confidence 5667777776666444
No 403
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.14 E-value=2.7e+02 Score=27.73 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 043362 217 WTAIIGGYGI---HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261 (516)
Q Consensus 217 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 261 (516)
+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444555544 46788888888888888877765554444444433
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.09 E-value=1.2e+02 Score=24.29 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=33.6
Q ss_pred HHHHHHHHHhh--cCCCCccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 335 LAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 335 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.+..+|+.|.. ++...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888865 5566777888999999999999999998864
No 405
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=49.98 E-value=2.2e+02 Score=26.62 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 043362 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALINMYARCGNLKKARAIF 206 (516)
Q Consensus 145 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 206 (516)
.++..+...++..++..+++..-.+++...... +...|...|..+|..-.+.|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 444444555555555555555555555444443 33444444555555544445444444443
No 406
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.81 E-value=1.3e+02 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~ 306 (516)
...+..|..++...|++++++.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHH
Confidence 3344555666666666665543
No 407
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.28 E-value=54 Score=23.78 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCChHHHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPD-G-TAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
..++.++|+..|+...+.-..|. . .++..++.+++..|++++++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888776433322 2 46677888888888888776653
No 408
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.07 E-value=3.2e+02 Score=28.29 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCC-CccchHHHhhHHH-HcCChhHHHHHHHHHH
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYS-EARNLDGIMRVRMMMR 378 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 378 (516)
....+.|-+..|.+..+.+..++|. ||.....+++.|+ ++.+++=-+++++..+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3345667777777777777777766 6666666666664 4555555555555553
No 409
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.93 E-value=35 Score=31.91 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 153 (516)
-||..|....+.||+++|+.++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888888888888888888888886654445443
No 410
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=47.60 E-value=3.2e+02 Score=27.78 Aligned_cols=75 Identities=7% Similarity=-0.172 Sum_probs=49.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 87 (516)
|+..|..-|..+-+.+.+.+.-.+|.+|.... -.||...+.+ ..-+-...+++.|+.++...++.. +.++..|-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALFLRGLRFN-PDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHHHHHhhcC-CCChHHHHH
Confidence 88899999977777777999999999998752 3333333321 122333345888888888777764 333444433
No 411
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.47 E-value=2.5e+02 Score=26.56 Aligned_cols=82 Identities=16% Similarity=-0.007 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 265 TDKGLEYFYGMKNKYGL---QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 341 (516)
.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56777888887763111 345566666677777778876666666655555678888889999998999999889999
Q ss_pred HHhhc
Q 043362 342 KVIKL 346 (516)
Q Consensus 342 ~~~~~ 346 (516)
.+..-
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 88874
No 412
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.36 E-value=3.8e+02 Score=29.39 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=87.7
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043362 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 270 (516)
.....+|+++.|.+.-.++. |...|..|...-...|+.+-|+..|++... |.-|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999988877665 556899999999999999999999987654 2233334666788888777
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 271 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
+.+.+..+ .|... ....-.-.|++++=.++++.....| ..|- ....+|.-++|.++.++...
T Consensus 720 m~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLP--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCccc--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 66655432 12211 1111123578888888888765322 2221 22467888899999888765
No 413
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=46.82 E-value=3.1e+02 Score=27.37 Aligned_cols=192 Identities=8% Similarity=-0.021 Sum_probs=91.1
Q ss_pred HHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 043362 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180 (516)
Q Consensus 101 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 180 (516)
...+.+.+...+.......+.++...+...-. ..+..+.+. ++...-...+.++...+. + ....+..+.+ .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~-~~L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d 158 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE-PWLEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---H 158 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH-HHHHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---C
Confidence 34444444444444455555555555443333 223333321 233333344444444331 1 1222222222 3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
++..+-..-+.+++..+..+..-.+-.-....|...-..-+.+....|. .+|......... .|+..+...+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHH
Confidence 4555555555555555554333333333445566666666666677776 566665555332 122222222222222
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
..| .+++...+..+.++ ..+-...+.++++.|+...+.-+.+.|.
T Consensus 235 l~~-~~~a~~~L~~ll~d------~~vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 235 VAG-GPDAQAWLRELLQA------AATRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hCC-chhHHHHHHHHhcC------hhhHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 222 23666666666542 2255566777778888777777777664
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.61 E-value=64 Score=24.23 Aligned_cols=52 Identities=6% Similarity=-0.073 Sum_probs=31.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC----C-----ccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 328 KIHKNVELAELAFGKVIKLEPM----N-----TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.||+..|.+.+.+..+.... . ..+...++..+...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666666655555442211 1 12334566777888888888888887754
No 415
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=46.09 E-value=3e+02 Score=26.99 Aligned_cols=186 Identities=13% Similarity=0.172 Sum_probs=111.0
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHH-HH-HHHHcCCCCCHHHHHHHH
Q 043362 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL-FD-EMLKSGIRPDGTAFVSVL 256 (516)
Q Consensus 179 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~-~~-~m~~~g~~p~~~t~~~ll 256 (516)
...+..+...+++.+...++|+.--+.. ....-++|+...|..- .+ -|.-..-.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 3445566677777888888777543321 1222356777766542 22 233223356666655555
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHH------------H
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL------------L 324 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l 324 (516)
..+... .++ ++|-+.. -...-..|...+..+|++++|.+++.+.+ +.||.++ +
T Consensus 114 ~tLr~V---teg-kIyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~----VETygsm~~~ekV~fiLEQm 178 (439)
T KOG1498|consen 114 ETLRTV---TEG-KIYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQ----VETYGSMEKSEKVAFILEQM 178 (439)
T ss_pred HHHHHh---hcC-ceEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcc----hhhhhhhHHHHHHHHHHHHH
Confidence 443221 000 0110000 12233456777888999999999998876 2233332 4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcC---CCC----ccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEE
Q 043362 325 GACKIHKNVELAELAFGKVIKLE---PMN----TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~ 393 (516)
..|...+|+-.|.-+-+++.... |+- ...|..++....+.+.+=++.+.++.+.+.|-.+....-|+..
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 66788889999988888775421 221 2357888888889999999999999998876555533446543
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.73 E-value=2.5e+02 Score=26.73 Aligned_cols=54 Identities=15% Similarity=0.021 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHh
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA---FVSVLSACSHAGLTDKGLEYFYGM 275 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~ 275 (516)
+.-+-.+.|+..+|.+.|+++.+. .|-... -..|+.+|.....+.....++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445677888888888776653 232222 225666666666666655555444
No 417
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.17 E-value=45 Score=31.17 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 256 (516)
.-|+..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788888899999999999999999988765555555433
No 418
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.06 E-value=3.3e+02 Score=27.22 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 289 TCMVDLLGRAGQLNEALELIESMLV--EPDGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
..|+.-|.-.|.+.+|...++++.. -...+++.+++.+.-+.|+-+.-..+++..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455556666666666666665431 123555666666666666554444444433
No 419
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.49 E-value=1e+02 Score=25.42 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 302 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
+.|.++.+-|. .....-.........|++..|..+.+.++..+|++..+-...+.+|...|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44555555553 223333344455678999999999999999999998888888888776654
No 420
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=43.85 E-value=8.7 Score=26.58 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.3
Q ss_pred ceEEEecCCccccccccccC
Q 043362 492 RQFIVRDATRFHHFKSGFCS 511 (516)
Q Consensus 492 ~~~~~~~~~~~h~~~~g~~~ 511 (516)
..|-+.|.+..|+|+||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 36778899999999999865
No 421
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.74 E-value=1.8e+02 Score=23.79 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhcCCHH---HHHHHHHhcC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 283 PGPEHYTCMVDLLGRAGQLN---EALELIESML--VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 283 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
++..+--.+..++.+..+.+ +...+++... ..|+ ....--|.-++.+.++++.+.++.+.+++.+|+|.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 34444444555555544433 3344444443 1222 22333455678889999999999999999999876
No 422
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.63 E-value=1.2e+02 Score=24.39 Aligned_cols=44 Identities=5% Similarity=-0.038 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 66 GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 66 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
.++.+..+...++-|++.+-.+-+.++-+.+++..|.++|+.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444555555666666666666666666666666666554
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.33 E-value=1.8e+02 Score=25.21 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=15.5
Q ss_pred HHHHhccCChHHHHHHHHHhHH
Q 043362 256 LSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~ 277 (516)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3467777777777777777764
No 424
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.25 E-value=2.9e+02 Score=26.08 Aligned_cols=76 Identities=24% Similarity=0.325 Sum_probs=39.6
Q ss_pred HhCCCCChhHHHHHHH-HHHHcCC-HHHHHHHHcccC-CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 043362 75 KFGLDLDFSVGNCLMT-MYVKCGS-VDYGRKLFDQVP-EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151 (516)
Q Consensus 75 ~~g~~~~~~~~~~ll~-~~~~~g~-~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 151 (516)
..| .|...+++.|.+ -+.+.|- ..-|.++|.... +.| .|.+++.+.+.+.-+.-+++ ++|+..+-
T Consensus 159 ~nG-t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmef--------fPpnkrs~ 226 (412)
T KOG2297|consen 159 SNG-TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEF--------FPPNKRSV 226 (412)
T ss_pred hCC-CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHh--------cCCcchhH
Confidence 335 344444454443 3444443 344667776543 333 35666666665554444444 47777666
Q ss_pred HHHHHHHHhcC
Q 043362 152 VGVLSSCAHLG 162 (516)
Q Consensus 152 ~~ll~~~~~~g 162 (516)
......+...|
T Consensus 227 E~Fak~Ft~ag 237 (412)
T KOG2297|consen 227 EHFAKYFTDAG 237 (412)
T ss_pred HHHHHHHhHhh
Confidence 55555554444
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.75 E-value=59 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=11.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHhH
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
..++.++...|++++|.++.+.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555444
No 426
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.36 E-value=76 Score=23.38 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=28.2
Q ss_pred HcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHH
Q 043362 94 KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 132 (516)
...+.++|.++++.++.++..+|.++..+.-..|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445577788888888888888888877777777655444
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.24 E-value=41 Score=30.10 Aligned_cols=55 Identities=25% Similarity=0.369 Sum_probs=31.0
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 296 GRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
.+.|+.+.|.+++.+.. ..| ....|--+...--+.|+.+.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34555555555555554 223 35555555555556666666666666666655544
No 428
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.79 E-value=94 Score=19.95 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=13.9
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043362 125 QNGLATHVLELYREMKSLGVCPDAVTFVGV 154 (516)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 154 (516)
+.|-..++..++++|.+.|+.-+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444444555555554544444444333
No 429
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.37 E-value=53 Score=30.72 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=24.8
Q ss_pred hcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 297 RAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+.|+.++|..+|+... ..|+ +....-+....-.++++-+|-+.+-+++.+.|.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 4455555555555433 2332 22222222333334455555555555555555444
No 430
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.27 E-value=4.8e+02 Score=27.95 Aligned_cols=94 Identities=10% Similarity=-0.100 Sum_probs=57.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCccchHHHhhHHHHcCChh
Q 043362 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE---PMNTGYYVLLSNIYSEARNLD 368 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 368 (516)
+..+...|...+|...+..+....+......+.......|..+.++....+....+ -.-+..|...+..+++.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 45566778888888888776534555556666666678888888887776543321 112334666666666666666
Q ss_pred HHHHHHHHHHhCCCCCC
Q 043362 369 GIMRVRMMMRERRLKKD 385 (516)
Q Consensus 369 ~a~~~~~~m~~~~~~~~ 385 (516)
.+.-.--...+.++.|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 66543333335555543
No 431
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.11 E-value=3.8e+02 Score=26.76 Aligned_cols=180 Identities=16% Similarity=0.126 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 225 (516)
++...-..+..++...+..+....+...+ +. .+..+..+.+.++...+. +-...+..-+...+...-..-+.++.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L-~~---~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLL-AA---SEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHh-cC---CChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34445566666666666555444433333 22 233444444455544331 11112222233445555555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
..+.. .+...+..+.. .+|...-...+.+....|. +.|...+..... .++..+...+...+...| -+++.
T Consensus 173 ~l~~~-~a~~~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~----~~g~~~~~~l~~~lal~~-~~~a~ 242 (410)
T TIGR02270 173 ELPRR-LSESTLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV----LEGGPHRQRLLVLLAVAG-GPDAQ 242 (410)
T ss_pred hhccc-cchHHHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh----ccCccHHHHHHHHHHhCC-chhHH
Confidence 55553 33333444332 3455555555666666666 555554444222 223333333333333332 23555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 306 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 342 (516)
+.+.....+++ +-...+.++.+.|+......+.+.
T Consensus 243 ~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~L~~~ 277 (410)
T TIGR02270 243 AWLRELLQAAA--TRREALRAVGLVGDVEAAPWCLEA 277 (410)
T ss_pred HHHHHHhcChh--hHHHHHHHHHHcCCcchHHHHHHH
Confidence 55555442333 444555666666665544444443
No 432
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.64 E-value=69 Score=23.22 Aligned_cols=21 Identities=10% Similarity=-0.328 Sum_probs=10.1
Q ss_pred hhcCCCchHHHHHHHHHHHhC
Q 043362 57 CVDPGYLWLGMCCHCICVKFG 77 (516)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~g 77 (516)
+.+..-.++|.++.+.+.+.|
T Consensus 41 L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 41 LRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 333344445555555555554
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.42 E-value=51 Score=22.59 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
.-.-.+|.+|.+.|++++|.++.+++..
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344567788888888888888777654
No 434
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.35 E-value=4.2e+02 Score=26.81 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhCCC
Q 043362 369 GIMRVRMMMRERRL 382 (516)
Q Consensus 369 ~a~~~~~~m~~~~~ 382 (516)
+..+-.+.|+...+
T Consensus 366 ~C~~ei~~mk~~~i 379 (480)
T PHA03100 366 ECEKEIERMKEIKL 379 (480)
T ss_pred HHHHHHHHHHhcEE
Confidence 34455666766555
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.04 E-value=4e+02 Score=26.37 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
+..+..+..-| .+++...+++++++.
T Consensus 306 Pqlr~il~~fy--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 306 PQLREILFKFY--SSKYASCLELLREIK 331 (466)
T ss_pred hHHHHHHHHHh--hhhHHHHHHHHHHhc
Confidence 33344444433 346677777777665
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.77 E-value=1.6e+02 Score=30.91 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCChH
Q 043362 219 AIIGGYGIHGHGEVAVQLFDEMLKS--GIRPDGTAFVSVLSACSHAGLTD 266 (516)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~ 266 (516)
+++.+|..+|++..+..+++..... |-+.-...++..|+...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 5667777777777777777766542 22222345566666666666543
No 437
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.55 E-value=1.7e+02 Score=30.75 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=39.6
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCC--CCChhHHHHHHHHHHHcCCHH------HHHHHHcccC-CCCchHHHHHHHH
Q 043362 52 CLLPICVDPGYLWLGMCCHCICVKFGL--DLDFSVGNCLMTMYVKCGSVD------YGRKLFDQVP-EKGLITWNAMISG 122 (516)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~------~A~~~f~~~~-~~~~~~~~~li~~ 122 (516)
+++.+|...|++..+.++++......- ..=...+|..++-..+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 677777777777777777777665531 112234566666666666543 3334443322 2234455555544
Q ss_pred H
Q 043362 123 Y 123 (516)
Q Consensus 123 ~ 123 (516)
.
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 438
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.28 E-value=4.5e+02 Score=26.83 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=21.0
Q ss_pred HHHHHHHH-HhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 043362 67 MCCHCICV-KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ 107 (516)
Q Consensus 67 ~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~ 107 (516)
...+.... +.|+.-+..+...++... .|++..|...++.
T Consensus 182 ~~~L~~i~~~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~ 221 (472)
T PRK14962 182 IKRLQEVAEAEGIEIDREALSFIAKRA--SGGLRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 33333333 345556665555555532 4677777666655
No 439
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.74 E-value=1.4e+02 Score=30.92 Aligned_cols=133 Identities=15% Similarity=0.070 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHhcc--CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhcC-CCC--CHHH
Q 043362 246 RPDGTAFVSVLSACSHA--GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG-RAGQLNEALELIESML-VEP--DGAV 319 (516)
Q Consensus 246 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~-~~p--~~~~ 319 (516)
-|+..+.-.++.-.... ...+-|..++..|.. .+.|--...| +...|- ..|+...|...+.... ..| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 45555555555443332 223344455554432 2333211111 223333 3588888888777654 333 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
...|.....+.|-...|-.++.+.+.+....+-++..++++|....+.+.|.+.|+...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 44455555666667778889988888887778899999999999999999999998876653
No 440
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.01 E-value=3.4e+02 Score=25.04 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 35677888899999999999999887655443333332233222222222222 122222233 344
Q ss_pred ccCChHHHHHHHHHhHHh
Q 043362 261 HAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~ 278 (516)
..++...|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567777777777666543
No 441
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.41 E-value=73 Score=28.57 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=49.9
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
....+|.+.+.+++.+++++-|.....|..+...-.++|+.+.|.+.+++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3567899999999999999999999999999999999999999999999887654
No 442
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=35.96 E-value=98 Score=18.48 Aligned_cols=18 Identities=11% Similarity=-0.204 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 043362 322 ALLGACKIHKNVELAELA 339 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~ 339 (516)
.+...+-..|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555666666665
No 443
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.91 E-value=3.3e+02 Score=24.51 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=24.8
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHh
Q 043362 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC-----MVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~ 310 (516)
+......|+.+.|.+....+... -+..|...+-. +|. +.|.|..++|+++.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIE-liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIE-LIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Confidence 33445555555555555544322 22223211111 111 3466677777777664
No 444
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.84 E-value=7.2e+02 Score=28.45 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=12.0
Q ss_pred HHHhCCCHHHHHHHHhcC
Q 043362 192 MYARCGNLKKARAIFDGM 209 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m 209 (516)
+|..+|...+|...|.+.
T Consensus 929 ~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred eeecCCchHHHHHHHHHH
Confidence 466677777777776654
No 445
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.81 E-value=3.7e+02 Score=25.03 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=75.4
Q ss_pred CCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHcccCCCCc-hHHHHHHHHHHH----cCChh
Q 043362 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK----CGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQ----NGLAT 130 (516)
Q Consensus 60 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~----~g~~~ 130 (516)
.+++..+...+......+ +......+..+|.. ..+..+|...|....+.+. .....|...|.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHH
Confidence 345555666665555433 22333444444443 2346777777776665553 333445555544 33677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----C---ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----CCCH
Q 043362 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHL----G---AHSVGLEVEQQIQANGFGSNPFLNNALINMYAR----CGNL 199 (516)
Q Consensus 131 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~ 199 (516)
+|...|++..+.|..+-..+...+...+..- + +...|...+.++...+ +......|..+|.. ..+.
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCH
Confidence 7888888877776544322222232333221 1 2235666666666665 33344444444533 2356
Q ss_pred HHHHHHHhcCCC
Q 043362 200 KKARAIFDGMPR 211 (516)
Q Consensus 200 ~~A~~~~~~m~~ 211 (516)
++|...|....+
T Consensus 208 ~~A~~wy~~Aa~ 219 (292)
T COG0790 208 KKAFRWYKKAAE 219 (292)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 446
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.11 E-value=66 Score=30.21 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGA-LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 281 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
+..|+..|...+.--.+.|.+.+...++.+.. ..| |+..|-. --.-+..+++++.+..+|.+.++++|++|..|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34466666666655556666667666666654 345 5666643 2233567889999999999999999888876654
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.56 E-value=2.5e+02 Score=24.37 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043362 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 325 (516)
+-.|.+.|.+++|.+++++....|+......-+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~ 151 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLL 151 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHH
Confidence 4456677777777777777654555444444333
No 448
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.83 E-value=2.5e+02 Score=22.51 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHh
Q 043362 166 VGLEVEQQIQANGFGSN-PFLNNALINMYARCGNLKKARAIFD 207 (516)
Q Consensus 166 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~ 207 (516)
.+.++|..|...|+-.. ...|..-...+.+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666554433 4456666666666777777776664
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.12 E-value=2e+02 Score=23.75 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 236 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
+.+.+.+.|++++..- ..++..+.+.+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 3445556666665432 34566666666667788888888765 4444555555556777777765
No 450
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.12 E-value=2.1e+02 Score=22.83 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------cCCCCccchH----HHhhHHHHcCChhHHHHHHHHH
Q 043362 316 DGAVWGALLGACKIHKNVELAELAFGKVIK-------LEPMNTGYYV----LLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 316 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 377 (516)
|...+..|-.++...|++++++...++.+. +..+.-..|. .-+.++...|+.++|.+.|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 455667777889999999988877666653 4444433343 3455677889999999988754
No 451
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.05 E-value=1.6e+02 Score=21.95 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=26.2
Q ss_pred HcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCCh
Q 043362 94 KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 129 (516)
..-+.+++.++++.++.++..+|..+..++...|..
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 345667788888888888888888888777665543
No 452
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.96 E-value=2.2e+02 Score=28.40 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
..+.++-+..+.+++|+..|..+.++++++.|..
T Consensus 300 ~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 300 ILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 4556667777889999999999999999998854
No 453
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=32.27 E-value=3.5e+02 Score=23.79 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
...+.++..+...|+++.|-+.|.-+.... +.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDi 75 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDI 75 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCCh
Confidence 456778888888899999999998888753 3443
No 454
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.23 E-value=2e+02 Score=21.20 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=26.0
Q ss_pred hCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043362 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 232 (516)
...+.+.|.++++.++.++..+|.++..++...|+..-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 44556777777777777777777777777766665443
No 455
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.23 E-value=4.9e+02 Score=25.43 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=43.4
Q ss_pred CHHHHHHHH---HHHHhcCCHHHHHHHHHHHhhcCCC-CccchHHHhhHHH-HcCChhHHHHHHHHHHh
Q 043362 316 DGAVWGALL---GACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYS-EARNLDGIMRVRMMMRE 379 (516)
Q Consensus 316 ~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 379 (516)
|...|.++. ....+.|-+..|.++.+-+..++|. |+..-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 455555543 5567788888888888888888887 6666666666664 56666666666665443
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.81 E-value=1.8e+02 Score=26.51 Aligned_cols=9 Identities=33% Similarity=0.032 Sum_probs=3.4
Q ss_pred HhcCCHHHH
Q 043362 328 KIHKNVELA 336 (516)
Q Consensus 328 ~~~g~~~~A 336 (516)
...|+.+..
T Consensus 229 ~~~~~~~~~ 237 (247)
T PF11817_consen 229 KRLGDVEDY 237 (247)
T ss_pred HHhCCHHHH
Confidence 333333333
No 457
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=31.75 E-value=7.3e+02 Score=27.33 Aligned_cols=306 Identities=13% Similarity=0.069 Sum_probs=157.5
Q ss_pred HHHHHHHHhHHCCCC-------CChhhHHHHHHHhh----cCCCchHHHHHHHHH----HHhCCCCChhHHHHHHHHHHH
Q 043362 30 EAVSLFGKMREQGVE-------INSVTMLCLLPICV----DPGYLWLGMCCHCIC----VKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 30 ~A~~l~~~m~~~g~~-------p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~ll~~~~~ 94 (516)
....+++++...|+. ++-+-|..++.-+. +.+......++|..+ ...| .|+. -|.--.+
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g-~~~e-----AI~hAla 372 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHG-LPSE-----AIDHALA 372 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCC-ChHH-----HHHHHHh
Confidence 345666777766632 23344555554433 222234445555433 3344 2322 2333446
Q ss_pred cCCHHHHHHHHcccC----CCC-c---------------hHHHH--HHH--HHHHcCChhHHHHHHHHHHHCCCCCC---
Q 043362 95 CGSVDYGRKLFDQVP----EKG-L---------------ITWNA--MIS--GYAQNGLATHVLELYREMKSLGVCPD--- 147 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~----~~~-~---------------~~~~~--li~--~~~~~g~~~~A~~~~~~m~~~g~~p~--- 147 (516)
.|+++.|..++++-. ..+ + ..... +.. ....+.++.+|..+..+....-..|+
T Consensus 373 A~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~ 452 (894)
T COG2909 373 AGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR 452 (894)
T ss_pred CCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc
Confidence 778877777776641 111 1 11111 112 23456789999999888765422222
Q ss_pred -HH---HHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----CH
Q 043362 148 -AV---TFVGVLS-SCAHLGAHSVGLEVEQQIQAN----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK----TV 214 (516)
Q Consensus 148 -~~---t~~~ll~-~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~ 214 (516)
.. .+..+-. .....|+++.+..+-+..... -..+....+..+..+..-.|++++|..+.....+. |+
T Consensus 453 ~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~ 532 (894)
T COG2909 453 QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV 532 (894)
T ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc
Confidence 22 2333222 234568889988887776653 23455677788888888899999998887655432 43
Q ss_pred h---HHHHHHH--HHHhcCCH--HHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhcc-CChHHHHHHHHHhHHhcC
Q 043362 215 V---SWTAIIG--GYGIHGHG--EVAVQLFDEMLKS--GIRP----DGTAFVSVLSACSHA-GLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 215 ~---~~~~li~--~~~~~g~~--~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~ 280 (516)
. .|..+.. .+...|+. .+.+..|...... +-+| -..+...++.++.+. +...++..-+.--. .+.
T Consensus 533 ~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~-~~~ 611 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGS-VYT 611 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhh-hcc
Confidence 3 3333332 24455632 3333334333321 1112 223455555555552 11222222222221 112
Q ss_pred CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHhcC---CCC----CHHHHHHHHH--HHHhcCCHHHHHHHHHH
Q 043362 281 LQPGPEHY--TCMVDLLGRAGQLNEALELIESML---VEP----DGAVWGALLG--ACKIHKNVELAELAFGK 342 (516)
Q Consensus 281 ~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~---~~p----~~~~~~~ll~--~~~~~g~~~~A~~~~~~ 342 (516)
..|-...+ ..|+..+...|++++|...++++. ..+ +..+-...+. .....||.+.+.....+
T Consensus 612 ~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 612 PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222 367788889999999999888775 222 2222222222 23467888877776665
No 458
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.38 E-value=1.8e+02 Score=26.56 Aligned_cols=18 Identities=6% Similarity=0.082 Sum_probs=9.2
Q ss_pred HHhhHHHHcCChhHHHHH
Q 043362 356 LLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~ 373 (516)
.+..++.+.|+.++...+
T Consensus 223 ~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 223 RLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 344455555555555544
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.27 E-value=1.7e+02 Score=24.87 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=40.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 240 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
+...|++++..-. .++.........-.|.++++.+.+. +..++..|.-.-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 4456776665433 4445555556667788888888765 55666666666677888888764
No 460
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.21 E-value=5.1e+02 Score=25.32 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=24.9
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHh
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQP--GPEHYTCMVDLLG-RAGQLNEALELIES 310 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~ 310 (516)
..+.+.|-+..|.++.+-+. .+.| |+.....+|+.|+ ++++++--.++.+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 34455555666665555554 2233 3444444455553 44555544444443
No 461
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.17 E-value=4.5e+02 Score=27.11 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCC--Cc---hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEK--GL---ITWNAMISGYAQNGLATHVLELYREMKS 141 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 141 (516)
..|+.-|.+.+++++|..++..|.=. +- .+.+.+.+...+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 46778899999999999999888522 12 3344444455555444444444554443
No 462
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.08 E-value=4.1e+02 Score=24.13 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=77.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH-AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 298 (516)
++..+-+.|+++++...++++...+...+..--+.|-.+|-. .|....+++++..+..+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455667788888888888888887666665555545445432 34444555555555443111111 2222223222211
Q ss_pred ------CCHHHHHHHHHhcCC----CCCHHH-HHHHHHHH----H-------hcCCHHHHHHHHHHHhh-----cCCCCc
Q 043362 299 ------GQLNEALELIESMLV----EPDGAV-WGALLGAC----K-------IHKNVELAELAFGKVIK-----LEPMNT 351 (516)
Q Consensus 299 ------g~~~~A~~~~~~m~~----~p~~~~-~~~ll~~~----~-------~~g~~~~A~~~~~~~~~-----~~p~~~ 351 (516)
.--.+...+++.... .+...+ |.-+-.-| + +..-.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 112334444444321 111111 21111111 1 11124667777777654 456665
Q ss_pred cchHHHh----hHHHHcCChhHHHHHHHHHHhCC
Q 043362 352 GYYVLLS----NIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 352 ~~~~~l~----~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
......+ -.|...|+.++|.++-+...+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4332222 23466899999998888776543
No 463
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.01 E-value=2.2e+02 Score=21.09 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccc
Q 043362 68 CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV 108 (516)
Q Consensus 68 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~ 108 (516)
++|+.....|+..|+.++..+++...-+=..+...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55555556666666666666666554444444444444444
No 464
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.83 E-value=2.3e+02 Score=21.14 Aligned_cols=62 Identities=15% Similarity=-0.027 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CccchHHHhhHHHHcCCh-hHHHHHHHHH
Q 043362 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM--NTGYYVLLSNIYSEARNL-DGIMRVRMMM 377 (516)
Q Consensus 316 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 377 (516)
|...--.+...+...|+++.|...+-.+++.+|+ +...-..|+.++.-.|.- .-+.++..+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4556666667777778888887777777776643 344556666666666653 2444444443
No 465
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.65 E-value=3.7e+02 Score=28.21 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 194 (516)
.|-.-+.-+...++.. ....+.+...-.-.+.....-++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 4544444443333222 344444444322335556667777788888777777777765443221 223455566677
Q ss_pred hCCCHHHHHHHHhcCC
Q 043362 195 RCGNLKKARAIFDGMP 210 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~ 210 (516)
++|+......+-+.+.
T Consensus 450 ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLL 465 (566)
T ss_dssp ----------------
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7787777666655443
No 466
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.63 E-value=6.5e+02 Score=28.39 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
++-|-..++|+.+=+-+++++.++.|... -| .+=.+.++++.|++-+.+
T Consensus 878 l~VAq~SQkDPKEYLPfL~~L~~l~~~~r-ry----~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 878 LMVAQQSQKDPKEYLPFLQELQKLPPLYR-RY----KIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHHhccChHHHHHHHHHHHhCChhhe-ee----eHhhhhCCHHHHHHHHHh
Confidence 44455566777777777777777665321 11 222356888888876654
No 467
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.58 E-value=2.9e+02 Score=24.34 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc-chHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTG-YYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
..+.++..|...||++.|.++|.-++...+-|.. .|..=+.++.+.+.-....++++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 3445556666666666666666666654433322 23344445555555444445555553
No 468
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.55 E-value=1e+02 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=8.8
Q ss_pred HHHHHHHcCChhHHHHHHHH
Q 043362 119 MISGYAQNGLATHVLELYRE 138 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~ 138 (516)
++..|...|+.++|...+.+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHH
Confidence 33444444555555444444
No 469
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.36 E-value=79 Score=29.62 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=34.6
Q ss_pred hccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC
Q 043362 260 SHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP 315 (516)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 315 (516)
.+.|+.++|..+|..... +.| ++.....+........++-+|-.++-+.. ..|
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 568999999999998874 455 34454444444445566667777766654 444
No 470
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=30.33 E-value=3.1e+02 Score=27.19 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC-----------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMPR-----------KTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
..-.|+..++-.|++..|.++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777888888888776641 134456666777777888888888777654
No 471
>PRK14700 recombination factor protein RarA; Provisional
Probab=29.82 E-value=4.9e+02 Score=24.64 Aligned_cols=124 Identities=9% Similarity=0.011 Sum_probs=68.5
Q ss_pred CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccc-C--CCCchHHHHH
Q 043362 43 VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-P--EKGLITWNAM 119 (516)
Q Consensus 43 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~-~--~~~~~~~~~l 119 (516)
+.-+......+... ..||...|...++.+.......+.. .+ ..+...++..+- . .++-..+..+
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~----~i-------t~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEI----YL-------NKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCC----cc-------CHHHHHHHHhHHHhcccCCcchhHHH
Confidence 34455555555543 3578888888887755421011100 00 122222222211 1 1222334446
Q ss_pred HHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCC
Q 043362 120 ISGYAQ---NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA-----HSVGLEVEQQIQANGF 179 (516)
Q Consensus 120 i~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~g~ 179 (516)
|+++.+ ..+++.|+-.+.+|.+.|-.|....-..++.++...|. +..|...++....-|+
T Consensus 130 iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 130 LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 777754 57899999999999999988887777777777776663 3334444444444444
No 472
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.50 E-value=5e+02 Score=24.67 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 234 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
.++++.|.+.++.|.-+.|.-+.-.+++.=.+.....+++.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35666666666777766666666566666666677777776664
No 473
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.44 E-value=5.2e+02 Score=24.88 Aligned_cols=54 Identities=7% Similarity=0.135 Sum_probs=25.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHhccCChHHHHHHHHHhHH
Q 043362 224 YGIHGHGEVAVQLFDEMLKS---GIRPDGTAFV--SVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
.-+.++.++|++.++++.+. --.|+.+.|. .....+...|+..++.+.+....+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444555565555555431 1234444433 233344455666666655555543
No 474
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.37 E-value=3.9e+02 Score=23.40 Aligned_cols=50 Identities=10% Similarity=0.160 Sum_probs=25.9
Q ss_pred HHhCCCHHHHHHHHhcCCC------CCHhHHHHHHH-HHHhcCC--HHHHHHHHHHHHH
Q 043362 193 YARCGNLKKARAIFDGMPR------KTVVSWTAIIG-GYGIHGH--GEVAVQLFDEMLK 242 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 242 (516)
....|++++|.+-++++.+ +-...|..+.. +|+.++. +.+|..++.-...
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 4455667777666665542 12234444443 5555554 4456555555444
No 475
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=4.9e+02 Score=24.49 Aligned_cols=95 Identities=17% Similarity=0.073 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHH----HCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCc----h
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMK----SLGVCPDAVTFVG-VLSSCAHLGAHSVGLEVEQQIQANGFGSN----P 183 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~ 183 (516)
..+|-.+..-|++-++.+.+.+...+.. ..|.+.|.....+ +.-.|....-.++-.+..+.+++.|-..+ .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 3577788888888888888877766543 3567777654333 33345555556777777788888775433 2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
.+|-.+-.+- ..++.+|-.+|...
T Consensus 195 K~Y~Gi~~m~--~RnFkeAa~Ll~d~ 218 (412)
T COG5187 195 KVYKGIFKMM--RRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 3444443332 35677776666544
No 476
>PF15161 Neuropep_like: Neuropeptide-like
Probab=29.26 E-value=27 Score=22.95 Aligned_cols=15 Identities=40% Similarity=0.888 Sum_probs=10.7
Q ss_pred eeecccchhHHHHHhh
Q 043362 473 LRICGDCHLFIKLVSK 488 (516)
Q Consensus 473 l~~~~~~~~a~~~~s~ 488 (516)
-|-|.|||.+. |+..
T Consensus 13 sRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 13 SRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCchhhHHHH-HHHH
Confidence 36799999776 5543
No 477
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.00 E-value=2.7e+02 Score=26.19 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=26.8
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS 141 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 141 (516)
++..+.+..++......+..+. .+..-...+......|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444431 223334455666667777777777666554
No 478
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.97 E-value=8.2e+02 Score=26.98 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----H-
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS-----S- 157 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-----~- 157 (516)
++..-.+.|.+.+++..|.+++.++ ..++-...--+....+.+ ++..|-.=+-..++|...+-..++. .
T Consensus 391 Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~ 465 (911)
T KOG2034|consen 391 VLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELY 465 (911)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence 3344445666777777777777776 233444444455555555 4444433222334554433333222 1
Q ss_pred HHhcCChH----HHHHHHHH--------HHH-cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 043362 158 CAHLGAHS----VGLEVEQQ--------IQA-NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224 (516)
Q Consensus 158 ~~~~g~~~----~a~~~~~~--------~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 224 (516)
+.+.++++ ++..-++. +.+ .....+.....+........|+.+.+..+-.-|. -|..++.-+
T Consensus 466 L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~ 540 (911)
T KOG2034|consen 466 LEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIK-----DYEFVVSYW 540 (911)
T ss_pred HHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHH
Confidence 12333322 22221111 111 1111222233344444555566665554433322 245566667
Q ss_pred HhcCCHHHHHHHHHH
Q 043362 225 GIHGHGEVAVQLFDE 239 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~ 239 (516)
.+.+.+++|++++..
T Consensus 541 ~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 541 IQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777776654
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.68 E-value=4.5e+02 Score=23.92 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=21.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043362 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 248 (516)
+|.+.....|+..+. .+++++|.+++.++-+.|..|.
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 444444455554433 4556677777776666666654
No 480
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.21 E-value=4.8e+02 Score=24.06 Aligned_cols=89 Identities=11% Similarity=-0.075 Sum_probs=39.7
Q ss_pred HHHhCCCchHHHHHHHHh----HHCCCCCChhhHHHHHHHhhcCCCch-HHHHHHHHHH---HhC--CCCChhHHHHHHH
Q 043362 21 GYVLNSLVSEAVSLFGKM----REQGVEINSVTMLCLLPICVDPGYLW-LGMCCHCICV---KFG--LDLDFSVGNCLMT 90 (516)
Q Consensus 21 ~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~---~~g--~~~~~~~~~~ll~ 90 (516)
.+.++|+...|-++-.-| .+.++++|......++..+...+.-+ .-.++...++ +.| -.-|+.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 445566665555543333 33456666655555555444332211 1222222222 222 1235566677777
Q ss_pred HHHHcCCHHHHHHHHcccC
Q 043362 91 MYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~ 109 (516)
.|.+.|++.+|+..|-.-.
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-
T ss_pred HHHhhccHHHHHHHHHhcC
Confidence 7777777777776665443
No 481
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.81 E-value=4.6e+02 Score=23.75 Aligned_cols=58 Identities=7% Similarity=0.012 Sum_probs=31.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA-HLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~ 175 (516)
.++..+-+.|++++++..++++...+...+..--+.+-.+|- ..|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 355666777888888888888877765555544444444442 2233344444444443
No 482
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.80 E-value=85 Score=21.83 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=34.1
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhh
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV 58 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 58 (516)
.|+...+|-|+..+++..-.++++..+.++...|. -+..+|.--++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 56677788888888888888888888888888873 45555554444443
No 483
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=27.41 E-value=6.2e+02 Score=25.32 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=58.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHH--------HHhCCCHHHHHHHHhcCCCC-
Q 043362 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM--------YARCGNLKKARAIFDGMPRK- 212 (516)
Q Consensus 142 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~~~~m~~~- 212 (516)
..+.||.++.+-+.+.++..-..+....+|+...+.+ .|-.+.+-+||-. -.+...-+++.++++.|+..
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4578999999988888888888888999999888876 3444444333321 13456678999999999842
Q ss_pred ---CHhHHHHHHHHHH
Q 043362 213 ---TVVSWTAIIGGYG 225 (516)
Q Consensus 213 ---~~~~~~~li~~~~ 225 (516)
|+.-+-.+..-|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 5555555555554
No 484
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.25 E-value=1.4e+02 Score=23.28 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=27.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCc
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 63 (516)
++..+...+..-.|-++++.+.+.+..++..|.-..|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555555566777777777766555666655555555555443
No 485
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=27.10 E-value=1.8e+02 Score=26.86 Aligned_cols=57 Identities=18% Similarity=0.039 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+=.++...++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-++...+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 335677888899999999999999998887777788888999988888888777543
No 486
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.05 E-value=2.7e+02 Score=20.76 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=9.5
Q ss_pred HHhccCChHHHHHHHHHhH
Q 043362 258 ACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~ 276 (516)
.....|..++|...+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3344455555555555444
No 487
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=26.60 E-value=57 Score=22.49 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.1
Q ss_pred CCCchHHHHHHHHhHHCC-CCCChh
Q 043362 25 NSLVSEAVSLFGKMREQG-VEINSV 48 (516)
Q Consensus 25 ~g~~~~A~~l~~~m~~~g-~~p~~~ 48 (516)
+-+++.|+..|.++...| ++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 347889999999998765 666544
No 488
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=26.56 E-value=3.4e+02 Score=21.83 Aligned_cols=58 Identities=17% Similarity=-0.026 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW-GALLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~ 342 (516)
..+..++..++.-.|..++|.+++......++-... .-++..|+...+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445566666777777777777777776543332222 3356666666666555554443
No 489
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.50 E-value=5.9e+02 Score=24.56 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV-LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 165 (516)
.+.+.++|.++-+.+..+-..++.--.....++..++-...-.+.. ..+++.+... ||..+...++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 3455556665555555554444443334444444444333333322 2233333322 66666666666666555555
Q ss_pred HHHHHHHHHHHc
Q 043362 166 VGLEVEQQIQAN 177 (516)
Q Consensus 166 ~a~~~~~~~~~~ 177 (516)
.....+..+.+.
T Consensus 248 ~~~~~i~~~L~~ 259 (340)
T PF12069_consen 248 LVAILIDALLQS 259 (340)
T ss_pred HHHHHHHHHhcC
Confidence 444444455444
No 490
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.70 E-value=1e+03 Score=26.95 Aligned_cols=28 Identities=11% Similarity=0.325 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHhcCCCC
Q 043362 185 LNNALINMYARCG--NLKKARAIFDGMPRK 212 (516)
Q Consensus 185 ~~~~li~~y~~~g--~~~~A~~~~~~m~~~ 212 (516)
....++.+|++.+ ++++|+....++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3455666666666 666666666666544
No 491
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.38 E-value=1e+02 Score=23.89 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhH
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMR 39 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~ 39 (516)
+.+|..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456778888899999999988864
No 492
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.05 E-value=2.3e+02 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=5.2
Q ss_pred HcCCHHHHHHHHc
Q 043362 94 KCGSVDYGRKLFD 106 (516)
Q Consensus 94 ~~g~~~~A~~~f~ 106 (516)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444443
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.36 E-value=1.7e+02 Score=22.78 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=21.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 264 (516)
..+...+..-.|.++++++.+.+..++..|....|..+...|.
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333334444555555555555544555554444555544443
No 494
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=23.73 E-value=46 Score=16.94 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=8.2
Q ss_pred cchhHHHHHhh
Q 043362 478 DCHLFIKLVSK 488 (516)
Q Consensus 478 ~~~~a~~~~s~ 488 (516)
..|+++|++|.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 45888888874
No 495
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.69 E-value=6.2e+02 Score=23.83 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 164 HSVGLEVEQQIQANGF----GSNPFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 164 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
.+.+.+.+......+. ..++.....+.....+.|+.+.-..+++.... ++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3445555555555311 23444444555555555554443333333322 234444555555555555555555555
Q ss_pred HHHH
Q 043362 239 EMLK 242 (516)
Q Consensus 239 ~m~~ 242 (516)
....
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 5444
No 496
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.52 E-value=1.1e+03 Score=26.42 Aligned_cols=209 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCchHHHHHHH
Q 043362 116 WNAMISGYAQNGLATHVLELYREMKS---LGVCPDAVTFVGVLSSCAHLGAH--SVGLEVEQQIQANGFGSNPFLNNALI 190 (516)
Q Consensus 116 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~li 190 (516)
|..|+-.|...|+.++|++++.+... ....--...+--++.-....+.. +...++-....+........++...-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------
Q 043362 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL------ 264 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 264 (516)
.--+.+=+.++....+. ....+-+...++.+....-.++..-.+.++.-|...=+
T Consensus 587 ~~~~~sis~~~Vl~~l~-------------------~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLK-------------------SKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCCHHHHHHHhh-------------------hhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Q ss_pred ----------hHHHHHHHHHhHHhcCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043362 265 ----------TDKGLEYFYGMKNKYGLQ------PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328 (516)
Q Consensus 265 ----------~~~a~~~~~~~~~~~~~~------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 328 (516)
+.+=...+......|... |....|....-.++|.|+-++|+.++-...
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L---------------- 711 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL---------------- 711 (877)
T ss_pred hccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh----------------
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+|++.|.......-+.++.+...|..++..|
T Consensus 712 --~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 712 --DDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred --cchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 497
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=23.15 E-value=9.5e+02 Score=26.64 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=27.7
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHhc
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE---HYTCMVDLLGRAGQLNEALELIESM 311 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m 311 (516)
..+...+..|+.+-+..+++ +|..++.. -.+.| ..-+..|+.+-+.-+++.-
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll~-----~Gadin~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~G 678 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELLK-----QGLNVDSEDHQGATAL-QVAMAEDHVDMVRLLIMNG 678 (823)
T ss_pred hHHHHHHHhCCHHHHHHHHH-----CCCCCCCCCCCCCCHH-HHHHHCCcHHHHHHHHHcC
Confidence 34555666777766655543 24444322 22222 3334667777777666644
No 498
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=5.9e+02 Score=23.29 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHh
Q 043362 414 YRMLDKLENLVQE 426 (516)
Q Consensus 414 ~~~l~~l~~~m~~ 426 (516)
...+.+++....+
T Consensus 189 ~kel~elf~~v~e 201 (284)
T KOG4642|consen 189 TKELSELFSKVDE 201 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 3445666665543
No 499
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=22.88 E-value=6.1e+02 Score=23.48 Aligned_cols=77 Identities=10% Similarity=-0.076 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC-------------
Q 043362 303 EALELIESMLVEPDGAVWGALLGAC----KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR------------- 365 (516)
Q Consensus 303 ~A~~~~~~m~~~p~~~~~~~ll~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 365 (516)
.|...+.++-..-+......|...| ....|.++|...|.+.-+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 4555555543222333333333333 234477778888877777665 33444444 444444
Q ss_pred --ChhHHHHHHHHHHhCCC
Q 043362 366 --NLDGIMRVRMMMRERRL 382 (516)
Q Consensus 366 --~~~~a~~~~~~m~~~~~ 382 (516)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55566666665554443
No 500
>PF14044 NETI: NETI protein
Probab=22.79 E-value=83 Score=21.04 Aligned_cols=16 Identities=0% Similarity=-0.110 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCCCCC
Q 043362 417 LDKLENLVQEHDGTKR 432 (516)
Q Consensus 417 l~~l~~~m~~~g~~p~ 432 (516)
+.+-+.+|++.||.|-
T Consensus 10 I~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPV 25 (57)
T ss_pred HHHHHHHHHHcCCCce
Confidence 3677899999999997
Done!