Query 043362
Match_columns 516
No_of_seqs 720 out of 3937
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.6E-35 1.6E-39 306.1 40.6 370 2-380 76-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-31 7.7E-36 278.2 32.1 346 11-363 199-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.4E-31 227.6 41.3 354 18-380 5-368 (388)
4 4g26_A Pentatricopeptide repea 100.0 5.5E-29 1.9E-33 251.3 22.0 197 101-298 9-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 3.5E-29 1.2E-33 252.8 20.3 212 29-262 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1E-25 3.5E-30 222.3 37.0 349 11-366 32-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.7E-23 9.1E-28 209.0 35.6 317 11-358 25-370 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.8E-23 6.3E-28 213.7 31.6 362 11-380 5-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3.2E-21 1.1E-25 193.7 33.6 294 81-380 25-358 (450)
10 3fp2_A TPR repeat-containing p 99.9 4.9E-21 1.7E-25 196.9 33.1 361 11-380 24-491 (537)
11 2gw1_A Mitochondrial precursor 99.9 3.6E-21 1.2E-25 196.7 29.3 344 9-357 36-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 3.7E-19 1.3E-23 172.5 32.6 322 12-363 3-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.5E-18 5.1E-23 168.2 34.1 304 48-380 4-335 (359)
14 3hym_B Cell division cycle pro 99.8 1.1E-18 3.7E-23 167.3 27.5 286 79-367 19-321 (330)
15 3fp2_A TPR repeat-containing p 99.8 1.4E-18 4.9E-23 178.5 28.6 338 10-353 57-498 (537)
16 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.6E-23 168.6 22.3 276 2-312 26-309 (449)
17 3hym_B Cell division cycle pro 99.8 3.3E-17 1.1E-21 156.9 30.3 286 44-334 19-322 (330)
18 1fch_A Peroxisomal targeting s 99.8 7E-18 2.4E-22 164.5 25.0 280 93-376 36-355 (368)
19 2xm6_A Protein corresponding t 99.8 7.7E-16 2.6E-20 156.5 40.9 352 10-382 37-434 (490)
20 3mkr_A Coatomer subunit epsilo 99.8 2.7E-16 9.4E-21 148.0 30.3 268 92-373 9-287 (291)
21 4eqf_A PEX5-related protein; a 99.8 1.7E-17 5.9E-22 161.8 22.3 276 97-376 46-352 (365)
22 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4.1E-23 168.2 12.1 281 59-373 15-304 (449)
23 2xm6_A Protein corresponding t 99.8 3.7E-15 1.3E-19 151.4 38.3 335 10-363 73-452 (490)
24 4g1t_A Interferon-induced prot 99.8 4.1E-16 1.4E-20 157.5 30.1 365 11-390 50-469 (472)
25 4eqf_A PEX5-related protein; a 99.8 5.7E-17 1.9E-21 158.1 22.6 263 46-312 64-354 (365)
26 1fch_A Peroxisomal targeting s 99.8 5.3E-17 1.8E-21 158.2 22.1 295 24-344 37-357 (368)
27 3cv0_A Peroxisome targeting si 99.8 1.4E-16 4.8E-21 152.3 23.7 259 114-377 22-312 (327)
28 2ooe_A Cleavage stimulation fa 99.7 4.1E-15 1.4E-19 152.7 34.7 364 11-381 12-455 (530)
29 3cv0_A Peroxisome targeting si 99.7 2.2E-16 7.6E-21 150.9 21.7 276 10-312 19-313 (327)
30 3mkr_A Coatomer subunit epsilo 99.7 4.5E-16 1.5E-20 146.5 22.4 246 120-380 6-264 (291)
31 3spa_A Mtrpol, DNA-directed RN 99.7 3.6E-18 1.2E-22 177.5 5.9 166 179-345 123-309 (1134)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.9E-22 172.5 9.3 148 81-228 126-286 (1134)
33 2ooe_A Cleavage stimulation fa 99.7 4.7E-14 1.6E-18 144.8 32.2 340 35-380 2-420 (530)
34 1xi4_A Clathrin heavy chain; a 99.7 2.4E-13 8.1E-18 146.0 35.2 321 16-375 989-1340(1630)
35 3uq3_A Heat shock protein STI1 99.6 1.4E-14 4.9E-19 133.1 21.5 225 115-379 7-235 (258)
36 3uq3_A Heat shock protein STI1 99.6 8.5E-15 2.9E-19 134.6 19.5 233 82-357 5-253 (258)
37 1xi4_A Clathrin heavy chain; a 99.6 3.4E-13 1.2E-17 144.9 32.8 317 15-373 1052-1377(1630)
38 2pl2_A Hypothetical conserved 99.6 2.5E-14 8.5E-19 128.4 18.4 194 180-377 2-211 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.1E-14 2.4E-18 129.9 21.0 241 125-374 17-269 (275)
40 2pl2_A Hypothetical conserved 99.6 4.5E-14 1.5E-18 126.8 18.3 195 10-209 3-211 (217)
41 3u4t_A TPR repeat-containing p 99.6 1E-13 3.5E-18 128.8 20.1 246 84-364 5-268 (272)
42 4g1t_A Interferon-induced prot 99.6 5.9E-13 2E-17 134.2 24.4 332 11-357 93-470 (472)
43 1ouv_A Conserved hypothetical 99.6 1.9E-12 6.4E-17 120.5 26.0 225 113-350 6-255 (273)
44 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-13 5.8E-18 124.8 18.0 213 114-362 24-238 (243)
45 2ho1_A Type 4 fimbrial biogene 99.5 9.8E-13 3.3E-17 120.6 23.2 206 113-353 37-245 (252)
46 2vq2_A PILW, putative fimbrial 99.5 1.7E-12 5.8E-17 116.4 24.1 199 154-355 14-220 (225)
47 1ouv_A Conserved hypothetical 99.5 3.1E-12 1E-16 119.0 26.6 224 147-382 5-253 (273)
48 2vq2_A PILW, putative fimbrial 99.5 1E-12 3.5E-17 117.9 22.3 199 180-380 5-211 (225)
49 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.9E-13 1.7E-17 124.2 20.1 242 22-272 15-269 (275)
50 2ho1_A Type 4 fimbrial biogene 99.5 8.7E-13 3E-17 120.9 21.4 197 183-381 37-239 (252)
51 2h6f_A Protein farnesyltransfe 99.5 7E-13 2.4E-17 129.1 21.4 244 114-363 98-365 (382)
52 3u4t_A TPR repeat-containing p 99.5 3.1E-12 1.1E-16 118.6 24.8 228 47-278 3-250 (272)
53 3e4b_A ALGK; tetratricopeptide 99.5 7.5E-13 2.6E-17 132.7 21.8 343 18-382 9-389 (452)
54 2q7f_A YRRB protein; TPR, prot 99.5 4.1E-13 1.4E-17 122.2 17.1 197 181-380 21-222 (243)
55 3e4b_A ALGK; tetratricopeptide 99.5 6.7E-13 2.3E-17 133.0 19.9 311 53-382 9-353 (452)
56 4a1s_A PINS, partner of inscut 99.5 2.5E-13 8.5E-18 134.3 16.7 195 185-379 128-371 (411)
57 3sf4_A G-protein-signaling mod 99.5 4.4E-13 1.5E-17 132.0 18.3 262 117-379 13-335 (406)
58 3sf4_A G-protein-signaling mod 99.5 1.7E-12 5.7E-17 127.8 21.6 257 84-368 49-364 (406)
59 3ro2_A PINS homolog, G-protein 99.5 9.2E-13 3.1E-17 125.7 18.9 262 118-380 10-332 (338)
60 2h6f_A Protein farnesyltransfe 99.5 1.9E-12 6.6E-17 126.0 19.5 226 148-379 97-347 (382)
61 3vtx_A MAMA; tetratricopeptide 99.5 1E-11 3.5E-16 108.0 20.8 165 213-380 4-170 (184)
62 4a1s_A PINS, partner of inscut 99.4 2E-12 6.7E-17 127.8 17.5 270 50-348 51-374 (411)
63 4abn_A Tetratricopeptide repea 99.4 1.5E-12 5E-17 131.4 16.2 208 165-377 85-318 (474)
64 3ro2_A PINS homolog, G-protein 99.4 4.6E-12 1.6E-16 120.8 17.7 98 251-348 225-334 (338)
65 2ond_A Cleavage stimulation fa 99.4 7.5E-11 2.6E-15 111.8 25.5 219 130-352 33-276 (308)
66 3vtx_A MAMA; tetratricopeptide 99.4 8.9E-12 3.1E-16 108.3 16.7 167 182-351 4-175 (184)
67 3nf1_A KLC 1, kinesin light ch 99.4 1.9E-12 6.4E-17 122.4 12.5 164 114-277 28-223 (311)
68 3ulq_A Response regulator aspa 99.4 1.5E-11 5E-16 120.6 18.2 163 216-379 186-367 (383)
69 3ulq_A Response regulator aspa 99.4 6.1E-11 2.1E-15 116.1 21.4 229 119-347 109-369 (383)
70 2ond_A Cleavage stimulation fa 99.4 1.9E-10 6.4E-15 109.0 23.8 177 99-278 81-270 (308)
71 1hz4_A MALT regulatory protein 99.3 1E-09 3.6E-14 106.8 28.4 259 121-379 22-321 (373)
72 4gyw_A UDP-N-acetylglucosamine 99.3 5.1E-11 1.7E-15 125.2 19.2 162 213-379 8-173 (723)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.1E-11 3.7E-16 117.1 12.4 246 82-349 27-310 (311)
74 3as5_A MAMA; tetratricopeptide 99.3 2.6E-10 9E-15 98.4 20.3 165 184-351 9-178 (186)
75 3as5_A MAMA; tetratricopeptide 99.3 1.1E-10 3.7E-15 100.9 17.6 163 215-380 9-173 (186)
76 3q15_A PSP28, response regulat 99.3 1.4E-10 4.7E-15 113.4 19.5 220 158-378 111-363 (378)
77 4e6h_A MRNA 3'-END-processing 99.3 3.8E-09 1.3E-13 109.8 31.0 366 10-380 64-570 (679)
78 4abn_A Tetratricopeptide repea 99.3 1.7E-10 5.7E-15 116.3 18.7 207 129-341 84-316 (474)
79 3q15_A PSP28, response regulat 99.2 1.5E-09 5.3E-14 105.9 23.8 229 118-346 106-365 (378)
80 4i17_A Hypothetical protein; T 99.2 4E-10 1.4E-14 101.5 18.2 204 146-360 5-223 (228)
81 1hz4_A MALT regulatory protein 99.2 3.9E-09 1.3E-13 102.7 25.7 224 18-241 20-280 (373)
82 4i17_A Hypothetical protein; T 99.2 5.8E-10 2E-14 100.4 18.3 187 182-380 6-209 (228)
83 3edt_B KLC 2, kinesin light ch 99.2 3.7E-10 1.2E-14 104.8 14.9 151 126-276 14-196 (283)
84 1qqe_A Vesicular transport pro 99.1 1.2E-09 4.2E-14 102.4 15.8 217 97-350 32-273 (292)
85 4gyw_A UDP-N-acetylglucosamine 99.1 8.6E-10 3E-14 115.9 16.0 160 183-347 9-175 (723)
86 1qqe_A Vesicular transport pro 99.1 1.6E-08 5.4E-13 94.9 21.7 231 29-312 2-267 (292)
87 3qky_A Outer membrane assembly 99.1 1.1E-08 3.9E-13 94.0 19.8 203 183-426 15-247 (261)
88 4e6h_A MRNA 3'-END-processing 99.0 4.4E-07 1.5E-11 94.3 32.7 352 28-382 48-535 (679)
89 3mv2_B Coatomer subunit epsilo 99.0 3.4E-08 1.2E-12 91.4 21.2 235 95-351 26-287 (310)
90 3edt_B KLC 2, kinesin light ch 99.0 5.5E-09 1.9E-13 96.7 16.0 220 23-242 12-280 (283)
91 3mv2_B Coatomer subunit epsilo 99.0 2.4E-08 8.1E-13 92.5 19.5 180 132-316 85-285 (310)
92 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.8E-13 81.6 16.7 130 216-348 3-134 (136)
93 3qky_A Outer membrane assembly 99.0 9.8E-09 3.4E-13 94.4 16.4 186 146-352 13-230 (261)
94 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4E-13 82.6 14.8 128 251-380 3-132 (136)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.8E-08 2E-12 87.1 19.9 181 184-382 5-215 (225)
96 3qou_A Protein YBBN; thioredox 98.9 2.6E-08 9E-13 93.0 17.1 173 202-378 105-282 (287)
97 4ga2_A E3 SUMO-protein ligase 98.9 1.2E-09 4.1E-14 91.3 6.3 140 222-366 5-149 (150)
98 2pzi_A Probable serine/threoni 98.9 5.3E-09 1.8E-13 110.1 12.1 168 194-366 402-583 (681)
99 3rjv_A Putative SEL1 repeat pr 98.8 1.6E-07 5.6E-12 83.3 17.7 161 213-382 17-199 (212)
100 2pzi_A Probable serine/threoni 98.8 4.9E-08 1.7E-12 102.8 16.1 168 58-229 402-583 (681)
101 2ifu_A Gamma-SNAP; membrane fu 98.8 1.6E-07 5.4E-12 88.7 18.0 219 126-372 4-253 (307)
102 2vsy_A XCC0866; transferase, g 98.8 9.7E-08 3.3E-12 98.5 17.8 160 196-358 2-169 (568)
103 2r5s_A Uncharacterized protein 98.8 4E-08 1.4E-12 84.4 12.6 75 304-378 93-171 (176)
104 2vsy_A XCC0866; transferase, g 98.8 5.6E-08 1.9E-12 100.3 15.6 151 227-381 2-158 (568)
105 3qou_A Protein YBBN; thioredox 98.8 3.6E-07 1.2E-11 85.3 18.5 164 145-310 114-280 (287)
106 3urz_A Uncharacterized protein 98.8 1.9E-07 6.6E-12 82.5 15.6 131 189-323 60-196 (208)
107 3urz_A Uncharacterized protein 98.8 3.7E-07 1.3E-11 80.7 17.4 129 117-249 58-190 (208)
108 2uy1_A Cleavage stimulation fa 98.8 6.1E-06 2.1E-10 83.0 28.3 348 14-379 17-412 (493)
109 4ga2_A E3 SUMO-protein ligase 98.7 1.9E-08 6.5E-13 83.9 7.5 122 255-379 3-128 (150)
110 3gyz_A Chaperone protein IPGC; 98.7 9.4E-08 3.2E-12 79.6 11.4 101 280-380 30-133 (151)
111 3rjv_A Putative SEL1 repeat pr 98.7 6.5E-07 2.2E-11 79.4 17.1 159 183-348 18-199 (212)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.7E-07 1.6E-11 80.0 16.1 125 252-381 9-151 (213)
113 3u3w_A Transcriptional activat 98.7 2.8E-06 9.6E-11 79.4 22.1 160 220-379 81-265 (293)
114 2yhc_A BAMD, UPF0169 lipoprote 98.7 4.8E-07 1.6E-11 81.0 16.0 185 147-352 3-219 (225)
115 3dra_A Protein farnesyltransfe 98.7 9.4E-06 3.2E-10 75.7 24.9 226 126-357 46-299 (306)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1E-06 3.4E-11 77.8 17.8 145 186-350 9-154 (213)
117 3dra_A Protein farnesyltransfe 98.7 4.2E-06 1.4E-10 78.1 21.9 213 163-379 48-286 (306)
118 2r5s_A Uncharacterized protein 98.7 2.6E-07 9.1E-12 79.2 12.8 153 187-344 10-171 (176)
119 4gco_A Protein STI-1; structur 98.7 4E-07 1.4E-11 73.3 12.9 107 251-359 15-123 (126)
120 2uy1_A Cleavage stimulation fa 98.7 3.5E-06 1.2E-10 84.8 22.6 323 24-377 6-380 (493)
121 2vgx_A Chaperone SYCD; alterna 98.6 1.1E-07 3.9E-12 79.0 9.6 97 284-380 20-118 (148)
122 1na0_A Designed protein CTPR3; 98.6 6.6E-07 2.3E-11 71.0 13.7 114 250-365 10-125 (125)
123 2qfc_A PLCR protein; TPR, HTH, 98.6 7.7E-07 2.6E-11 83.2 16.2 163 216-378 77-264 (293)
124 1a17_A Serine/threonine protei 98.6 7.2E-07 2.5E-11 75.1 14.4 126 251-378 15-144 (166)
125 4gco_A Protein STI-1; structur 98.6 3.7E-07 1.3E-11 73.5 11.7 100 281-380 8-110 (126)
126 2vyi_A SGTA protein; chaperone 98.6 7.8E-07 2.7E-11 71.2 13.2 117 249-367 12-130 (131)
127 2lni_A Stress-induced-phosphop 98.6 7.1E-07 2.4E-11 71.9 12.6 116 249-366 16-133 (133)
128 2c2l_A CHIP, carboxy terminus 98.6 1.1E-07 3.8E-12 88.5 8.6 50 330-379 148-198 (281)
129 2ifu_A Gamma-SNAP; membrane fu 98.6 4.3E-07 1.5E-11 85.6 12.8 197 160-378 3-222 (307)
130 3u3w_A Transcriptional activat 98.6 3.9E-06 1.3E-10 78.4 19.2 158 120-277 82-265 (293)
131 1p5q_A FKBP52, FK506-binding p 98.5 7.4E-07 2.5E-11 85.2 13.4 143 214-378 147-292 (336)
132 2xcb_A PCRH, regulatory protei 98.5 9.4E-07 3.2E-11 72.7 11.5 96 285-380 18-115 (142)
133 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.7E-11 76.2 12.8 151 195-345 4-175 (203)
134 2e2e_A Formate-dependent nitri 98.5 5.5E-07 1.9E-11 77.1 9.5 118 261-380 22-144 (177)
135 3upv_A Heat shock protein STI1 98.5 1.4E-06 4.7E-11 69.9 11.2 95 285-379 4-100 (126)
136 2qfc_A PLCR protein; TPR, HTH, 98.5 5.6E-06 1.9E-10 77.3 17.1 94 115-208 77-180 (293)
137 4f3v_A ESX-1 secretion system 98.4 2.3E-06 8E-11 78.1 13.2 126 220-349 108-240 (282)
138 2kck_A TPR repeat; tetratricop 98.4 1.3E-06 4.5E-11 67.8 10.3 97 285-381 6-107 (112)
139 4f3v_A ESX-1 secretion system 98.4 7.1E-06 2.4E-10 74.9 16.3 137 185-323 104-247 (282)
140 3gw4_A Uncharacterized protein 98.4 1.4E-06 4.6E-11 76.2 11.1 82 95-176 5-94 (203)
141 3q49_B STIP1 homology and U bo 98.4 3E-06 1E-10 68.8 12.1 97 284-380 8-106 (137)
142 1hxi_A PEX5, peroxisome target 98.4 1.4E-06 4.8E-11 69.4 9.6 94 287-380 19-114 (121)
143 3q7a_A Farnesyltransferase alp 98.4 0.0003 1E-08 66.3 26.9 180 15-198 57-257 (349)
144 2fbn_A 70 kDa peptidylprolyl i 98.4 3.2E-06 1.1E-10 73.8 12.5 171 189-380 10-186 (198)
145 1elw_A TPR1-domain of HOP; HOP 98.4 5.8E-06 2E-10 64.6 12.8 107 251-359 6-114 (118)
146 2e2e_A Formate-dependent nitri 98.4 2.7E-06 9.3E-11 72.7 11.7 126 225-353 21-151 (177)
147 2vgx_A Chaperone SYCD; alterna 98.4 1.6E-06 5.4E-11 71.9 9.8 103 249-353 21-125 (148)
148 2dba_A Smooth muscle cell asso 98.4 7.2E-06 2.5E-10 67.3 13.9 109 249-360 28-142 (148)
149 3sz7_A HSC70 cochaperone (SGT) 98.4 2.5E-06 8.6E-11 71.9 11.3 92 287-378 13-106 (164)
150 1na0_A Designed protein CTPR3; 98.4 4.1E-06 1.4E-10 66.3 11.7 96 285-380 9-106 (125)
151 1wao_1 Serine/threonine protei 98.4 3.3E-06 1.1E-10 84.7 13.6 117 257-376 14-135 (477)
152 1a17_A Serine/threonine protei 98.4 1.5E-05 5.1E-10 66.8 15.6 128 215-345 14-145 (166)
153 1elw_A TPR1-domain of HOP; HOP 98.4 4.4E-06 1.5E-10 65.3 11.4 97 284-380 3-101 (118)
154 2c2l_A CHIP, carboxy terminus 98.3 5.3E-06 1.8E-10 77.0 13.2 191 147-347 3-200 (281)
155 3gyz_A Chaperone protein IPGC; 98.3 3.9E-06 1.3E-10 69.6 10.8 97 251-350 38-137 (151)
156 3upv_A Heat shock protein STI1 98.3 6.3E-06 2.1E-10 65.9 11.8 108 251-360 6-121 (126)
157 2lni_A Stress-induced-phosphop 98.3 6.7E-06 2.3E-10 66.0 12.0 117 9-127 13-132 (133)
158 3q7a_A Farnesyltransferase alp 98.3 0.00034 1.2E-08 66.0 25.0 230 115-350 56-336 (349)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 8.1E-06 2.8E-10 68.7 12.7 107 249-357 11-119 (164)
160 2xcb_A PCRH, regulatory protei 98.3 5.1E-06 1.7E-10 68.2 11.1 104 251-356 20-125 (142)
161 4gcn_A Protein STI-1; structur 98.3 4.7E-06 1.6E-10 67.0 10.1 95 285-379 8-111 (127)
162 2dba_A Smooth muscle cell asso 98.3 8.3E-06 2.9E-10 66.9 11.9 97 284-380 27-128 (148)
163 2vyi_A SGTA protein; chaperone 98.2 9.1E-06 3.1E-10 64.8 11.2 97 284-380 11-109 (131)
164 3dss_A Geranylgeranyl transfer 98.2 0.00037 1.2E-08 65.4 23.2 192 164-360 90-318 (331)
165 3q49_B STIP1 homology and U bo 98.2 1.2E-05 4.1E-10 65.1 11.5 100 248-349 8-109 (137)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.9E-05 6.4E-10 78.8 14.5 95 285-379 317-414 (457)
167 3rkv_A Putative peptidylprolyl 98.2 1.5E-05 5.3E-10 66.8 11.6 63 317-379 63-125 (162)
168 1wao_1 Serine/threonine protei 98.2 1.2E-05 4E-10 80.7 12.5 114 225-341 17-134 (477)
169 2kck_A TPR repeat; tetratricop 98.2 1.5E-05 5.3E-10 61.5 10.7 99 251-351 8-111 (112)
170 1p5q_A FKBP52, FK506-binding p 98.2 3.4E-05 1.2E-09 73.5 14.9 113 162-276 127-257 (336)
171 2hr2_A Hypothetical protein; a 98.2 1E-05 3.5E-10 66.7 9.6 62 318-379 58-130 (159)
172 1elr_A TPR2A-domain of HOP; HO 98.1 1.1E-05 3.9E-10 64.3 9.5 96 285-380 4-108 (131)
173 4b4t_Q 26S proteasome regulato 98.1 2.1E-05 7.3E-10 77.6 13.3 162 217-378 58-243 (434)
174 2xev_A YBGF; tetratricopeptide 98.1 9.5E-06 3.2E-10 64.9 8.8 89 291-379 8-104 (129)
175 2fbn_A 70 kDa peptidylprolyl i 98.1 7.4E-06 2.5E-10 71.5 8.7 147 154-305 10-176 (198)
176 1elr_A TPR2A-domain of HOP; HO 98.1 4.2E-05 1.4E-09 60.9 12.2 105 253-360 8-121 (131)
177 3dss_A Geranylgeranyl transfer 98.1 0.00061 2.1E-08 63.9 21.5 179 199-380 90-304 (331)
178 4b4t_Q 26S proteasome regulato 98.1 0.0002 6.9E-09 70.5 19.3 57 120-176 11-83 (434)
179 4gcn_A Protein STI-1; structur 98.1 6E-05 2.1E-09 60.3 12.6 59 217-276 11-69 (127)
180 2xev_A YBGF; tetratricopeptide 98.1 5.9E-05 2E-09 60.1 12.5 99 255-353 8-112 (129)
181 2if4_A ATFKBP42; FKBP-like, al 98.1 1.5E-05 5.2E-10 76.0 10.2 147 214-380 179-328 (338)
182 3ro3_A PINS homolog, G-protein 98.1 3.9E-05 1.3E-09 63.6 11.6 92 288-379 52-157 (164)
183 3k9i_A BH0479 protein; putativ 98.1 4.2E-06 1.4E-10 66.1 5.2 61 318-378 28-88 (117)
184 3ro3_A PINS homolog, G-protein 98.0 2.7E-05 9.3E-10 64.5 10.5 132 216-347 11-159 (164)
185 3n71_A Histone lysine methyltr 98.0 5.1E-05 1.8E-09 75.7 13.9 124 258-381 318-465 (490)
186 1ihg_A Cyclophilin 40; ppiase 98.0 4.5E-05 1.6E-09 73.6 13.0 137 215-373 224-363 (370)
187 2hr2_A Hypothetical protein; a 98.0 1.7E-05 6E-10 65.4 8.5 72 287-358 59-143 (159)
188 1hxi_A PEX5, peroxisome target 98.0 3.3E-05 1.1E-09 61.3 9.3 96 12-109 17-112 (121)
189 3k9i_A BH0479 protein; putativ 97.9 1.7E-05 5.7E-10 62.5 6.8 91 262-353 3-97 (117)
190 3rkv_A Putative peptidylprolyl 97.9 4.1E-05 1.4E-09 64.2 9.5 74 284-357 62-138 (162)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 4E-05 1.4E-09 73.1 9.9 152 183-351 179-333 (338)
192 2l6j_A TPR repeat-containing p 97.9 3.3E-05 1.1E-09 59.7 7.6 92 284-375 3-102 (111)
193 1na3_A Designed protein CTPR2; 97.8 9.2E-05 3.1E-09 54.7 9.1 81 285-365 9-91 (91)
194 1dce_A Protein (RAB geranylger 97.8 0.00071 2.4E-08 69.1 18.5 167 200-369 46-244 (567)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00016 5.6E-09 72.0 11.7 96 285-380 268-380 (457)
196 3ma5_A Tetratricopeptide repea 97.7 0.00013 4.4E-09 55.5 8.3 64 316-379 6-69 (100)
197 3n71_A Histone lysine methyltr 97.7 0.00021 7.3E-09 71.3 11.5 95 184-278 352-464 (490)
198 2kat_A Uncharacterized protein 97.6 0.00024 8.3E-09 55.4 8.7 76 304-379 4-81 (115)
199 1ihg_A Cyclophilin 40; ppiase 97.6 0.00051 1.7E-08 66.2 11.9 118 84-203 225-361 (370)
200 1zu2_A Mitochondrial import re 97.5 7.1E-05 2.4E-09 61.6 4.6 85 297-381 14-121 (158)
201 2l6j_A TPR repeat-containing p 97.5 8.2E-05 2.8E-09 57.4 4.7 97 11-109 3-105 (111)
202 1klx_A Cysteine rich protein B 97.4 0.0017 5.9E-08 52.5 11.2 111 228-347 9-127 (138)
203 3bee_A Putative YFRE protein; 97.4 0.00088 3E-08 50.0 8.4 68 315-382 4-74 (93)
204 3qwp_A SET and MYND domain-con 97.3 0.00077 2.6E-08 66.2 9.8 116 292-425 294-427 (429)
205 2kat_A Uncharacterized protein 97.3 0.00067 2.3E-08 52.8 7.7 80 268-349 4-85 (115)
206 1zu2_A Mitochondrial import re 97.3 0.00023 7.7E-09 58.6 4.7 51 301-351 62-125 (158)
207 1klx_A Cysteine rich protein B 97.3 0.0075 2.6E-07 48.7 13.8 112 263-382 9-128 (138)
208 1na3_A Designed protein CTPR2; 97.2 0.0016 5.4E-08 47.8 8.7 83 11-95 8-90 (91)
209 3ly7_A Transcriptional activat 97.1 0.013 4.4E-07 55.3 15.3 138 212-351 192-344 (372)
210 3qww_A SET and MYND domain-con 97.1 0.0023 8E-08 62.6 10.8 92 261-352 310-422 (433)
211 1dce_A Protein (RAB geranylger 97.1 0.012 4.3E-07 59.9 16.4 171 26-201 43-244 (567)
212 3qwp_A SET and MYND domain-con 97.1 0.0038 1.3E-07 61.2 11.8 101 255-355 293-414 (429)
213 3qww_A SET and MYND domain-con 97.0 0.0012 4.2E-08 64.6 8.1 83 297-379 310-410 (433)
214 3mkq_A Coatomer beta'-subunit; 97.0 0.027 9.3E-07 60.1 19.4 95 93-208 610-706 (814)
215 3ma5_A Tetratricopeptide repea 97.0 0.0035 1.2E-07 47.3 8.8 64 213-277 6-69 (100)
216 2kc7_A BFR218_protein; tetratr 96.9 0.005 1.7E-07 46.0 9.1 64 291-354 6-72 (99)
217 3mkq_A Coatomer beta'-subunit; 96.9 0.077 2.6E-06 56.6 21.3 153 21-208 608-761 (814)
218 2kc7_A BFR218_protein; tetratr 96.6 0.0044 1.5E-07 46.3 6.6 59 323-381 6-65 (99)
219 1pc2_A Mitochondria fission pr 96.5 0.013 4.6E-07 47.5 9.0 65 315-379 30-99 (152)
220 1wy6_A Hypothetical protein ST 96.5 0.16 5.4E-06 39.8 14.0 140 225-383 18-157 (172)
221 3ly7_A Transcriptional activat 96.2 0.076 2.6E-06 50.1 13.6 62 213-276 276-337 (372)
222 3bee_A Putative YFRE protein; 96.2 0.03 1E-06 41.4 9.0 69 282-350 3-76 (93)
223 3u64_A Protein TP_0956; tetrat 96.1 0.019 6.6E-07 51.9 8.4 86 301-386 179-275 (301)
224 3mkq_B Coatomer subunit alpha; 96.0 0.38 1.3E-05 40.0 15.2 129 90-240 13-141 (177)
225 1pc2_A Mitochondria fission pr 96.0 0.059 2E-06 43.7 10.0 69 283-351 30-105 (152)
226 3lvg_A Clathrin heavy chain 1; 95.8 0.013 4.4E-07 56.7 6.3 210 11-235 53-325 (624)
227 2v5f_A Prolyl 4-hydroxylase su 95.8 0.049 1.7E-06 41.2 8.5 71 286-356 6-85 (104)
228 1qsa_A Protein (soluble lytic 95.5 2.6 8.8E-05 43.0 26.2 314 15-345 10-347 (618)
229 3mkq_B Coatomer subunit alpha; 95.4 0.28 9.6E-06 40.8 12.3 129 191-343 13-141 (177)
230 3u64_A Protein TP_0956; tetrat 95.0 0.18 6E-06 45.7 10.5 113 95-209 134-266 (301)
231 3lvg_A Clathrin heavy chain 1; 94.6 6.1E-06 2.1E-10 79.2 -20.1 198 81-297 53-275 (624)
232 1nzn_A CGI-135 protein, fissio 94.6 0.26 8.8E-06 38.4 9.3 27 325-351 82-108 (126)
233 2v5f_A Prolyl 4-hydroxylase su 93.8 0.25 8.5E-06 37.2 7.8 65 252-316 8-78 (104)
234 4gns_B Protein CSD3, chitin bi 93.7 0.2 6.8E-06 52.2 9.1 54 325-378 345-398 (754)
235 1nzn_A CGI-135 protein, fissio 93.4 1.2 4.1E-05 34.6 11.0 86 228-316 15-106 (126)
236 4h7y_A Dual specificity protei 92.8 0.82 2.8E-05 36.6 9.2 99 6-107 8-119 (161)
237 1y8m_A FIS1; mitochondria, unk 91.1 4.7 0.00016 31.9 12.3 47 333-379 58-105 (144)
238 1wy6_A Hypothetical protein ST 91.0 4.7 0.00016 31.7 15.2 137 126-281 20-156 (172)
239 4ady_A RPN2, 26S proteasome re 91.0 8.6 0.00029 41.0 17.2 157 158-320 500-664 (963)
240 4h7y_A Dual specificity protei 90.9 0.48 1.6E-05 37.9 5.9 51 331-381 74-124 (161)
241 3lpz_A GET4 (YOR164C homolog); 89.1 14 0.00048 34.1 22.1 166 187-379 39-215 (336)
242 2ff4_A Probable regulatory pro 88.6 0.86 3E-05 43.7 7.2 67 321-387 175-246 (388)
243 3ffl_A Anaphase-promoting comp 88.3 3.5 0.00012 33.6 9.4 23 290-312 127-149 (167)
244 2uwj_G Type III export protein 87.9 6.4 0.00022 28.8 9.4 86 163-253 21-106 (115)
245 2p58_C Putative type III secre 87.4 6.9 0.00024 28.7 9.6 85 163-252 22-106 (116)
246 1v54_E Cytochrome C oxidase po 87.4 3.2 0.00011 30.5 7.6 64 229-294 25-88 (109)
247 3o48_A Mitochondria fission 1 86.8 3.5 0.00012 32.2 8.2 45 334-378 60-105 (134)
248 4fhn_B Nucleoporin NUP120; pro 86.4 12 0.0004 41.5 15.5 164 86-267 816-989 (1139)
249 2wpv_A GET4, UPF0363 protein Y 86.3 20 0.00068 32.8 19.9 169 84-278 35-217 (312)
250 3lpz_A GET4 (YOR164C homolog); 86.2 21 0.00071 33.0 21.2 168 84-277 37-215 (336)
251 4fhn_B Nucleoporin NUP120; pro 85.0 32 0.0011 38.1 18.0 142 154-303 818-989 (1139)
252 2ff4_A Probable regulatory pro 85.0 7.7 0.00026 37.0 11.6 71 217-288 174-248 (388)
253 4gns_B Protein CSD3, chitin bi 84.9 26 0.00088 36.5 16.0 52 258-312 346-398 (754)
254 4b4t_P 26S proteasome regulato 84.6 24 0.00084 34.2 15.2 187 126-312 29-245 (445)
255 2uwj_G Type III export protein 84.3 10 0.00035 27.8 9.8 88 61-153 20-107 (115)
256 2wpv_A GET4, UPF0363 protein Y 84.1 25 0.00086 32.1 22.1 180 158-378 23-215 (312)
257 2p58_C Putative type III secre 83.7 11 0.00038 27.7 10.2 88 61-153 21-108 (116)
258 1zbp_A Hypothetical protein VP 83.1 20 0.00067 31.9 12.2 125 222-352 5-135 (273)
259 1v54_E Cytochrome C oxidase po 82.0 9 0.00031 28.2 7.9 60 30-90 28-87 (109)
260 2y69_E Cytochrome C oxidase su 81.2 6.6 0.00023 30.6 7.3 64 229-294 68-131 (152)
261 3o48_A Mitochondria fission 1 81.0 9.2 0.00031 29.9 8.3 35 317-351 78-112 (134)
262 3ffl_A Anaphase-promoting comp 78.9 23 0.0008 28.8 10.4 27 184-210 123-149 (167)
263 1y8m_A FIS1; mitochondria, unk 77.1 25 0.00087 27.8 11.3 70 282-351 36-111 (144)
264 4b4t_P 26S proteasome regulato 74.6 64 0.0022 31.2 22.8 176 96-275 30-244 (445)
265 2y69_E Cytochrome C oxidase su 72.2 21 0.00072 27.9 7.9 45 65-109 71-115 (152)
266 3ltm_A Alpha-REP4; protein eng 71.5 44 0.0015 28.0 18.1 49 79-127 30-78 (211)
267 4ady_A RPN2, 26S proteasome re 69.1 1.3E+02 0.0043 32.3 21.7 248 92-344 384-656 (963)
268 2qx5_A Nucleoporin NIC96; mRNA 63.4 1.4E+02 0.0046 30.6 17.8 45 14-60 155-199 (661)
269 1zbp_A Hypothetical protein VP 62.9 15 0.00051 32.6 6.3 58 293-350 5-64 (273)
270 4b4t_R RPN7, 26S proteasome re 62.1 51 0.0018 31.7 10.7 59 218-276 135-195 (429)
271 3txn_A 26S proteasome regulato 61.9 1.1E+02 0.0037 29.0 18.2 162 149-310 20-206 (394)
272 3esl_A Checkpoint serine/threo 61.3 73 0.0025 26.8 10.1 105 302-432 61-171 (202)
273 4b4t_R RPN7, 26S proteasome re 60.5 24 0.00081 34.1 8.0 93 115-209 133-234 (429)
274 3ltm_A Alpha-REP4; protein eng 60.1 74 0.0025 26.5 19.3 80 45-128 31-110 (211)
275 3ltj_A Alpharep-4; protein eng 57.2 81 0.0028 26.0 19.8 81 79-163 25-105 (201)
276 3txn_A 26S proteasome regulato 52.2 1.6E+02 0.0054 27.8 26.2 213 154-382 105-345 (394)
277 2qx5_A Nucleoporin NIC96; mRNA 52.0 2.1E+02 0.0072 29.2 14.6 21 296-316 549-569 (661)
278 1k1a_A B-cell lymphoma 3-encod 51.3 77 0.0026 26.8 9.3 93 11-109 6-103 (241)
279 2nsz_A Programmed cell death p 49.2 74 0.0025 24.5 7.7 63 85-147 10-77 (129)
280 1n11_A Ankyrin; clathrin, BAND 48.8 1.4E+02 0.0047 28.3 11.5 14 419-432 358-371 (437)
281 4b4t_S RPN3, 26S proteasome re 47.7 1.7E+02 0.0057 28.8 11.4 177 183-382 231-431 (523)
282 1wdy_A 2-5A-dependent ribonucl 47.5 90 0.0031 27.1 9.3 15 194-208 113-127 (285)
283 3mv2_A Coatomer subunit alpha; 47.5 1.7E+02 0.0057 26.7 12.1 54 313-380 201-256 (325)
284 1n11_A Ankyrin; clathrin, BAND 46.2 74 0.0025 30.3 9.0 331 18-384 17-370 (437)
285 2l0z_A Glycoprotein G2; zinc-b 46.1 6.6 0.00023 23.0 0.8 10 506-515 20-29 (42)
286 3ltj_A Alpharep-4; protein eng 45.6 1.2E+02 0.0043 24.8 17.8 17 182-198 151-167 (201)
287 2d2s_A Exocyst complex compone 45.5 65 0.0022 28.0 7.5 87 221-311 25-117 (235)
288 2k0q_A Putative uncharacterize 45.3 6.3 0.00022 26.4 0.7 21 492-512 8-28 (74)
289 1k1a_A B-cell lymphoma 3-encod 44.2 1.1E+02 0.0037 25.8 9.1 54 56-109 15-70 (241)
290 2d2s_A Exocyst complex compone 42.9 1.2E+02 0.0042 26.2 8.9 23 119-141 24-46 (235)
291 2nsz_A Programmed cell death p 42.9 63 0.0022 24.9 6.4 60 187-246 11-75 (129)
292 3jxi_A Vanilloid receptor-rela 40.3 31 0.001 30.1 4.8 91 19-109 9-117 (260)
293 2ion_A PDCD4, programmed cell 39.6 71 0.0024 25.5 6.3 62 85-146 12-78 (152)
294 4a1g_A Mitotic checkpoint seri 38.5 1.5E+02 0.0051 23.6 9.3 48 336-383 84-133 (152)
295 3eu9_A Huntingtin-interacting 38.4 34 0.0012 29.0 4.8 90 9-107 4-98 (240)
296 2r9g_A AAA ATPase, central reg 37.7 1.8E+02 0.0062 24.4 8.8 62 118-180 16-85 (204)
297 3ygs_P Procaspase 9; apoptosis 37.6 35 0.0012 24.8 3.9 38 96-133 51-88 (97)
298 4gq2_M Nucleoporin NUP120; bet 36.4 3.1E+02 0.011 29.4 12.7 52 88-140 816-867 (950)
299 4a1g_A Mitotic checkpoint seri 35.8 1.7E+02 0.0057 23.4 8.0 51 99-149 82-137 (152)
300 3hra_A Ankyrin repeat family p 35.4 1.3E+02 0.0044 24.5 7.9 18 92-109 12-29 (201)
301 3aji_A 26S proteasome non-ATPa 35.4 87 0.003 26.3 6.9 85 18-107 9-95 (231)
302 3ljn_A Hypothetical protein; a 35.3 1.6E+02 0.0054 27.0 9.2 14 297-310 253-266 (364)
303 2ion_A PDCD4, programmed cell 34.1 59 0.002 26.0 5.0 59 187-245 13-76 (152)
304 3twe_A Alpha4H; unknown functi 33.1 49 0.0017 16.6 2.6 17 410-426 3-19 (27)
305 1qsa_A Protein (soluble lytic 33.1 4E+02 0.014 26.9 29.8 239 128-384 229-483 (618)
306 4b4t_S RPN3, 26S proteasome re 32.9 1.4E+02 0.0048 29.3 8.3 64 249-312 231-297 (523)
307 1oyz_A Hypothetical protein YI 32.2 2.5E+02 0.0086 24.4 19.4 18 80-97 35-52 (280)
308 3qye_A TBC1 domain family memb 32.2 2.9E+02 0.0099 25.1 10.5 131 26-163 163-309 (331)
309 3hra_A Ankyrin repeat family p 31.4 1E+02 0.0036 25.0 6.6 82 21-107 11-94 (201)
310 2p1h_A APAF-1, apoptotic prote 30.9 1.3E+02 0.0044 21.4 6.1 38 95-132 49-86 (94)
311 3mv2_A Coatomer subunit alpha; 29.6 3.2E+02 0.011 24.8 11.6 49 114-177 208-256 (325)
312 3ygs_P Procaspase 9; apoptosis 28.6 62 0.0021 23.5 3.9 38 197-234 51-88 (97)
313 3bqo_A Telomeric repeat-bindin 27.6 2.7E+02 0.0093 23.3 8.0 57 301-357 94-157 (211)
314 1wdy_A 2-5A-dependent ribonucl 27.5 2.9E+02 0.0099 23.6 9.3 80 193-273 155-240 (285)
315 2yru_A Steroid receptor RNA ac 27.3 1.1E+02 0.0037 23.2 5.1 43 135-177 48-90 (118)
316 1oai_A Nuclear RNA export fact 27.2 40 0.0014 21.9 2.3 24 25-48 33-57 (59)
317 2wvi_A Mitotic checkpoint seri 26.6 2.5E+02 0.0087 22.6 9.3 48 336-383 79-128 (164)
318 2fe3_A Peroxide operon regulat 25.8 1.3E+02 0.0045 23.5 5.8 63 238-302 11-73 (145)
319 2xig_A Ferric uptake regulatio 25.3 1.8E+02 0.0062 22.9 6.5 63 238-302 16-78 (150)
320 1ug3_A EIF4GI, eukaryotic prot 25.2 3.9E+02 0.013 24.4 10.8 61 85-145 14-78 (339)
321 3bge_A Predicted ATPase; struc 24.9 3E+02 0.01 23.0 8.3 45 118-162 9-56 (201)
322 3kea_A K1L; tropism, ANK repea 24.4 2.3E+02 0.0078 24.8 8.0 18 190-207 165-182 (285)
323 2ko4_A Mediator of RNA polymer 23.5 87 0.003 21.6 3.5 33 6-38 29-62 (81)
324 1oyz_A Hypothetical protein YI 23.3 3.6E+02 0.012 23.3 22.7 18 181-198 140-157 (280)
325 2hgo_A CASSIICOLIN; toxin, dis 23.3 16 0.00055 18.5 -0.1 13 504-516 8-22 (27)
326 3kea_A K1L; tropism, ANK repea 22.9 2.2E+02 0.0076 24.9 7.6 89 292-385 133-222 (285)
327 3esl_A Checkpoint serine/threo 21.9 3.5E+02 0.012 22.6 11.2 54 229-283 94-148 (202)
328 2rfa_A Transient receptor pote 21.9 1.7E+02 0.0057 24.5 6.3 87 88-179 78-182 (232)
329 2pk8_A Uncharacterized protein 21.2 62 0.0021 23.1 2.4 45 408-457 13-58 (103)
330 2lo3_A SAGA-associated factor 21.1 29 0.00099 20.6 0.7 10 472-481 16-25 (44)
331 4aez_C MAD3, mitotic spindle c 21.0 3.9E+02 0.013 22.8 8.2 49 334-382 131-181 (223)
332 3qye_A TBC1 domain family memb 20.6 4.7E+02 0.016 23.6 10.3 41 169-209 209-249 (331)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-35 Score=306.11 Aligned_cols=370 Identities=11% Similarity=0.004 Sum_probs=321.4
Q ss_pred ccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC
Q 043362 2 FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 2 f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
|+. +| .+++.+|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|...|++++|.++++.+... +++
T Consensus 76 ~~~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 149 (597)
T 2xpi_A 76 QNT-DS-LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS 149 (597)
T ss_dssp --------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC
T ss_pred ccc-ch-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc
Confidence 556 77 789999999999999999999999999999854 688899999999999999999999999987654 788
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccC-CC------------------CchHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVP-EK------------------GLITWNAMISGYAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~-~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 142 (516)
..+++.++.+|.++|++++|.++|+++. .. ++.+|+.++.+|.+.|++++|+++|++|.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999543 33 3689999999999999999999999998654
Q ss_pred CC----------------------------------------------------------------------CCCHHHHH
Q 043362 143 GV----------------------------------------------------------------------CPDAVTFV 152 (516)
Q Consensus 143 g~----------------------------------------------------------------------~p~~~t~~ 152 (516)
+. +++..++.
T Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 31 26777888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC---------------------------------CCchHHHHHHHHHHHhCCCH
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQANGF---------------------------------GSNPFLNNALINMYARCGNL 199 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~g~---------------------------------~~~~~~~~~li~~y~~~g~~ 199 (516)
.++.++.+.|++++|.++++++.+.+. +.+..+++.++.+|.++|++
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 889999999999999999999876432 33567888899999999999
Q ss_pred HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 200 KKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 200 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998774 3468899999999999999999999999998863 4578899999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-------VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 277 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
+. .+.++.+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|...|++++|...++++.+.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 64 23478899999999999999999999999884 3676 7899999999999999999999999999999
Q ss_pred CCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 348 PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 348 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-31 Score=278.16 Aligned_cols=346 Identities=10% Similarity=-0.040 Sum_probs=306.3
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-hhhHHH-------------------------------------
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEIN-SVTMLC------------------------------------- 52 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~------------------------------------- 52 (516)
++.+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 68999999999999999999999999999864 43 333222
Q ss_pred -HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCchHHHHHHHHHHHcCC
Q 043362 53 -LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KGLITWNAMISGYAQNGL 128 (516)
Q Consensus 53 -ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 128 (516)
++..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence 244556778899999999988776 68999999999999999999999999999853 357899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 129 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
+++|.++|+++.+. .+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999865 35578899999999999999999999999999864 45688999999999999999999999998
Q ss_pred CC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCC
Q 043362 209 MP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GLQ 282 (516)
Q Consensus 209 m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~ 282 (516)
+. ..+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +..
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 75 3478899999999999999999999999999863 4578899999999999999999999999998643 557
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 283 PG--PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 283 p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
|+ ..+|..++.+|.+.|++++|.++++++. ..| +..+|..+..+|...|++++|...++++++++|+++.++..++
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 77 7899999999999999999999999886 335 7999999999999999999999999999999999999999998
Q ss_pred hHHHH
Q 043362 359 NIYSE 363 (516)
Q Consensus 359 ~~~~~ 363 (516)
.+|..
T Consensus 592 ~~~~~ 596 (597)
T 2xpi_A 592 RALEE 596 (597)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 88753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.9e-26 Score=227.61 Aligned_cols=354 Identities=13% Similarity=0.060 Sum_probs=310.8
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
+...+.+.|++++|+..+..+.+.. +.+...+..+...+...+++++|...++..++.. +.+..++..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4567788999999999999998763 3344556666777888999999999999998876 6788899999999999999
Q ss_pred HHHHHHHHcccCC--C-CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 043362 98 VDYGRKLFDQVPE--K-GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLGAHSVGLEVEQQ 173 (516)
Q Consensus 98 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 173 (516)
+++|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998753 3 3468999999999999999999999999875 354 45667778889999999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043362 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250 (516)
Q Consensus 174 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 250 (516)
+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...+...|++++|+..|++..... +.+..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 99874 4567899999999999999999999999875 3467789999999999999999999999998853 33578
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGAC 327 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 327 (516)
++..+..++...|++++|...|+++.+. .| ++..|..+...|.+.|++++|.+.++++. .+++..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 8899999999999999999999999864 34 57789999999999999999999999886 334789999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.5e-29 Score=251.34 Aligned_cols=197 Identities=15% Similarity=0.188 Sum_probs=162.7
Q ss_pred HHHHHcccCCCCc-----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 043362 101 GRKLFDQVPEKGL-----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA---------HSV 166 (516)
Q Consensus 101 A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~ 166 (516)
+..+++++.++.. ..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4444455544332 45788888899999999999999999988999999999999998886554 678
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
|.++|++|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999998886 46889999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 043362 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298 (516)
Q Consensus 243 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 298 (516)
.|+.||..||++||.+|++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999876 9999999999999888753
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.5e-29 Score=252.79 Aligned_cols=212 Identities=12% Similarity=0.097 Sum_probs=176.8
Q ss_pred hHHHHHHHHhHHCCCCCCh-hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 043362 29 SEAVSLFGKMREQGVEINS-VTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ 107 (516)
Q Consensus 29 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~ 107 (516)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 4556677788877766554 358888999999999999999999999999999999999999999887754321
Q ss_pred cCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHH
Q 043362 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187 (516)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 187 (516)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1234578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 188 ALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999986 5799999999999999999999999999999999999999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1e-25 Score=222.32 Aligned_cols=349 Identities=12% Similarity=0.045 Sum_probs=308.2
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
++..+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 45667778888999999999999999988764 6678899999999999999999999999999885 556778999999
Q ss_pred HHHHcCCHHHHHHHHcccCC--CC-chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 91 MYVKCGSVDYGRKLFDQVPE--KG-LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
.|.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764 33 4678889999999999999999999998753 34578899999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 244 (516)
...++++++.+ +.+...+..+...+...|++++|...|++.. ..+..+|..+..+|.+.|++++|++.|+++.+..
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999975 4567889999999999999999999998764 3467899999999999999999999999999853
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHH
Q 043362 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGA 322 (516)
Q Consensus 245 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ 322 (516)
+.+..++..+..++...|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++. ..| +..++..
T Consensus 268 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T 1w3b_A 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 335678999999999999999999999999874 35578899999999999999999999999987 445 5889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
+...+...|++++|...++++++..|+++.+|..++.++...|+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999988877653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.7e-23 Score=209.03 Aligned_cols=317 Identities=12% Similarity=0.050 Sum_probs=213.9
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
++.+|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34445555555555555555555555555432 2334445555555555555555555555555443 333444444455
Q ss_pred HHHHcCCHHHHHHHHcccCCCCc------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKGL------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 164 (516)
+|.+.|++++|.+.|+++.+.+. .+|..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 55555555555555444433221 2333332221100 111223346667788
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887777754 4467777888888888888888888887764 3467788888888888888889988888888
Q ss_pred HcCCCCC-HHHHHHH------------HHHHhccCChHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 043362 242 KSGIRPD-GTAFVSV------------LSACSHAGLTDKGLEYFYGMKNKYGLQPG-----PEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 242 ~~g~~p~-~~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 303 (516)
.. .|+ ...+..+ ...|.+.|++++|..+|..+.+. .|+ ..++..+...+.+.|++++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 64 344 3333333 78899999999999999999865 444 4578899999999999999
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 304 ALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 304 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
|...++++. ..| +..+|..+..+|...|++++|...+++++++.|+++.++..+.
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999875 345 6899999999999999999999999999999999998888888
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-23 Score=213.71 Aligned_cols=362 Identities=11% Similarity=-0.057 Sum_probs=308.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
.+..|-.....+.+.|++++|+..|+++.... |+..++..+..++...|++++|.+.++.+++.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 45567788899999999999999999999874 799999999999999999999999999999986 667789999999
Q ss_pred HHHHcCCHHHHHHHHcccCCCC----------------------------------------------------------
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKG---------------------------------------------------------- 112 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~---------------------------------------------------------- 112 (516)
+|.+.|++++|...|+++.+.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999998763221
Q ss_pred ------------------------chHHHHHHHHHHH---cCChhHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 043362 113 ------------------------LITWNAMISGYAQ---NGLATHVLELYREMKS-----LGV--------CPDAVTFV 152 (516)
Q Consensus 113 ------------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~ 152 (516)
...|......+.. .|++++|+..|+++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1222333333343 8999999999999987 311 12345777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGH 229 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 229 (516)
.+...+...|++++|...++.+.+.... ..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999987633 88899999999999999999999987653 367789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
+++|+..|++..+.. +.+..++..+...+...|++++|...+..+.+. .+.+...+..+...|.+.|++++|...++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998863 335678889999999999999999999999865 23356788999999999999999999998
Q ss_pred hcC----CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 310 SML----VEPD----GAVWGALLGACKI---HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 310 ~m~----~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
++. ..|+ ..+|..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 875 1222 4488899999999 9999999999999999999999999999999999999999999999987
Q ss_pred hC
Q 043362 379 ER 380 (516)
Q Consensus 379 ~~ 380 (516)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.2e-21 Score=193.74 Aligned_cols=294 Identities=13% Similarity=0.043 Sum_probs=213.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 157 (516)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 334444555555555555555555544432 123445555555555555555555555554432 2234444455555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCch---HHHHH------------HHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHH
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNP---FLNNA------------LINMYARCGNLKKARAIFDGMP---RKTVVSWTA 219 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~------------li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~ 219 (516)
+...|++++|...++.+.+.. +.+. ..+.. +...|.+.|++++|.+.|+++. ..+...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 555555555555555554432 1122 33333 3555888999999999999875 347889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHH-------
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCM------- 291 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l------- 291 (516)
+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+... .| +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 456789999999999999999999999999864 44 34444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 292 -----VDLLGRAGQLNEALELIESML-VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 292 -----i~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
...+.+.|++++|.+.|+++. ..|+ ...|..+...+...|++++|+..++++++..|+++.++..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 788999999999999999886 4455 45788889999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 043362 361 YSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 361 ~~~~g~~~~a~~~~~~m~~~ 380 (516)
|...|++++|.+.++.+.+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=4.9e-21 Score=196.93 Aligned_cols=361 Identities=12% Similarity=-0.004 Sum_probs=295.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
....|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34678888999999999999999999999874 5577889999999999999999999999999987 667889999999
Q ss_pred HHHHcCCHHHHHHHHcccCC-CCch-------------------------------------------------------
Q 043362 91 MYVKCGSVDYGRKLFDQVPE-KGLI------------------------------------------------------- 114 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~-~~~~------------------------------------------------------- 114 (516)
.|.+.|++++|...|+.+.. ++..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999864421 1100
Q ss_pred --------------HHHHHHHHHH--------HcCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHhcCCh
Q 043362 115 --------------TWNAMISGYA--------QNGLATHVLELYREMKSLGVCPD--------AVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 115 --------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~g~~ 164 (516)
.+..+...+. ..|++++|+.+|+++.+. .|+ ..++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 1111111111 124788999999999875 344 23466667788899999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
++|...++.+.+.. |+..++..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|...|++..
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999974 457889999999999999999999999875 3467889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C---C---
Q 043362 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V---E--- 314 (516)
Q Consensus 242 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~--- 314 (516)
+.. +.+...+..+...+...|++++|..++..+.+. .+.+...+..+...|...|++++|.+.++++. . .
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 863 335678889999999999999999999999875 23357788999999999999999999999875 1 1
Q ss_pred -CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 315 -PDGAVWGALLGACKIH----------KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 315 -p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.....+..+...+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++...+.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223344555667777 99999999999999999999999999999999999999999999998764
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.6e-21 Score=196.67 Aligned_cols=344 Identities=13% Similarity=-0.029 Sum_probs=288.7
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC--------
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL-------- 80 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------- 80 (516)
.||+.+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|...++.+++.+...
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 4789999999999999999999999999999874 4556789999999999999999999999988775211
Q ss_pred ----------------------------------------------------------------------ChhHHHHHHH
Q 043362 81 ----------------------------------------------------------------------DFSVGNCLMT 90 (516)
Q Consensus 81 ----------------------------------------------------------------------~~~~~~~ll~ 90 (516)
+...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 1222233333
Q ss_pred HHHH---cCCHHHHHHHHcccCC-----C------------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 043362 91 MYVK---CGSVDYGRKLFDQVPE-----K------------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150 (516)
Q Consensus 91 ~~~~---~g~~~~A~~~f~~~~~-----~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 150 (516)
.+.. .|++++|...|+++.+ . +..+|..+...+...|++++|+..|+++.+.. |+..+
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 3333 8999999999988755 2 24678899999999999999999999998864 44778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhc
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIH 227 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 227 (516)
+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++.. ..+..+|..+...|...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 8889999999999999999999999864 4567889999999999999999999998764 34677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHh---cCC
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGR---AGQ 300 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~ 300 (516)
|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+...-.++ ...+..+...|.. .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998853 345678889999999999999999999998865322233 4488999999999 999
Q ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 301 LNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 301 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
+++|...++++. ..| +..+|..+...+...|++++|...++++.++.|+++..+..+
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999876 334 588899999999999999999999999999999887666554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3.7e-19 Score=172.48 Aligned_cols=322 Identities=11% Similarity=0.035 Sum_probs=211.5
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+++.. +.+..++..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556666777777777777777777776653 3345556666666666666666666666666654 3345556666666
Q ss_pred HHHcCCHHHHHHHHcccCCCCc------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043362 92 YVKCGSVDYGRKLFDQVPEKGL------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 165 (516)
|.+.|++++|...|++..+.+. ..|..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666665543222 12222210000 001112245566667777
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 166 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
+|...++.+.+.. +.+..++..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777766653 3456666777777777777777777776654 23566777777778888888888888887776
Q ss_pred cCCCCCHHHHH------------HHHHHHhccCChHHHHHHHHHhHHhcCCCCC-H----HHHHHHHHHHHhcCCHHHHH
Q 043362 243 SGIRPDGTAFV------------SVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-P----EHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 243 ~g~~p~~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~ 305 (516)
.. +.+...+. .+...+...|++++|...++.+.+. .|+ . ..+..+...|...|++++|.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 42 22222222 2355678889999999999888865 233 2 23556778888899999999
Q ss_pred HHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 306 ELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 306 ~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
+.+++.. ..| +..+|..+...+...|++++|...++++++++|++...+..+..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9988876 345 688888888999999999999999999999999888777777666543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.5e-18 Score=168.20 Aligned_cols=304 Identities=12% Similarity=-0.000 Sum_probs=217.9
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHH
Q 043362 48 VTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYA 124 (516)
Q Consensus 48 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~ 124 (516)
..+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+. +..+|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555555666666666666666666554 344555666666666666666666666554321 2345555666666
Q ss_pred HcCChhHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHH
Q 043362 125 QNGLATHVLELYREMKSLGVCP---D-AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200 (516)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 200 (516)
..|++++|+..|++..+. .| + ...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 666666666666665543 23 1 111111111100 111233467889999999
Q ss_pred HHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 201 KARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 201 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
+|.+.|+++. ..+...|..+...|...|++++|+..+++..+.. +.+..++..+...+...|++++|...++...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999875 3477889999999999999999999999998863 45678889999999999999999999999986
Q ss_pred hcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHhcC-CCCC-H----HHHHHHHHHHHhcCCHHHHHHH
Q 043362 278 KYGLQPGPEHYT------------CMVDLLGRAGQLNEALELIESML-VEPD-G----AVWGALLGACKIHKNVELAELA 339 (516)
Q Consensus 278 ~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~-~~p~-~----~~~~~ll~~~~~~g~~~~A~~~ 339 (516)
.. +.+...+. .+...+.+.|++++|.+.++++. ..|+ . ..+..+...+...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 52 22333332 33667899999999999999876 3454 3 2345577889999999999999
Q ss_pred HHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 340 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++++.+..|+++.++..++.+|...|++++|.+.++...+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999764
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.1e-18 Score=167.26 Aligned_cols=286 Identities=15% Similarity=0.066 Sum_probs=180.2
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043362 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155 (516)
Q Consensus 79 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 155 (516)
+.+..++..+...+...|++++|.++|+++.+. +...+..++..+.+.|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 334444455555555556666666655554322 22344455555566666666666666655532 22344555555
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHH
Q 043362 156 SSCAHLG-AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGE 231 (516)
Q Consensus 156 ~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 231 (516)
..+...| ++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++. ..+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5556666 5666666666665543 2344556666666666666666666665543 223455555666677777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG-------LQPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 304 (516)
+|...|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777766642 33456666777777777777777777777665321 123456777888888888888888
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH-HHcCCh
Q 043362 305 LELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY-SEARNL 367 (516)
Q Consensus 305 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 367 (516)
.+.+++.. ..| +...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888765 233 5777888888888888888888888888888888888888888777 344443
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.4e-18 Score=178.47 Aligned_cols=338 Identities=13% Similarity=0.046 Sum_probs=269.9
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCC----------
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLD---------- 79 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---------- 79 (516)
.++.+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|...++.+ .....
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPML 134 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHH
Confidence 478899999999999999999999999999875 456778888999999999999999988633 21100
Q ss_pred ---------------------------CChh------------------------------HHHHHHHHHHH--------
Q 043362 80 ---------------------------LDFS------------------------------VGNCLMTMYVK-------- 94 (516)
Q Consensus 80 ---------------------------~~~~------------------------------~~~~ll~~~~~-------- 94 (516)
|+.. ....+...+..
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0000 22222222221
Q ss_pred cCCHHHHHHHHcccCCCCc----------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 043362 95 CGSVDYGRKLFDQVPEKGL----------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 164 (516)
.|++++|..+|+++.+.+. .+|..+...+...|++++|+..|++..+. .|+..++..+...+...|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 2478899999988865432 35777888899999999999999999885 56778888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
++|...+..+.+.. +.+..++..+...|...|++++|.+.|++.. ..+...|..+...|...|++++|...|+++.
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999875 4568889999999999999999999999875 3467789999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhc----------CCHHHHHHH
Q 043362 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP----GPEHYTCMVDLLGRA----------GQLNEALEL 307 (516)
Q Consensus 242 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~ 307 (516)
+.. +.+...+..+...+...|++++|...++.+.+...-.+ ....+..+...|.+. |++++|...
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 863 44567888999999999999999999999876421111 222344556777788 999999999
Q ss_pred HHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 308 IESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 308 ~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
+++.. ..| +..+|..+...+...|++++|...++++.++.|++...
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99876 345 58889999999999999999999999999999987644
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.1e-18 Score=168.62 Aligned_cols=276 Identities=12% Similarity=0.084 Sum_probs=139.9
Q ss_pred ccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC
Q 043362 2 FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 2 f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
|++ ++ .| .+|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++..++. .++
T Consensus 26 ae~-~~-~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~ 93 (449)
T 1b89_A 26 AER-CN-EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHh-CC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Ccc
Confidence 455 55 55 4999999999999999999999965 367789999999999999999999988887774 556
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 161 (516)
+.+.+.|+.+|.++|+++++.++|+. ++..+|+.+...|...|.+++|...|..+ ..|..+..++.+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp ---------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence 78899999999999999999988864 66779999999999999999999999977 3789999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|..+++...
T Consensus 162 g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 162 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999988 378999999999999999999988887765 444445568999999999999999999987
Q ss_pred HcCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 242 KSGIRPDGTAFVSVLSACSH--AGLTDKGLEYFYGMKNKYGLQP------GPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 242 ~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
... +-....|+.+.-++++ .+++.+..+.|.. +-+++| +...|..++-.|..-++++.|...+-+-+
T Consensus 235 ~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 643 3345566666555554 4445555554442 224444 46789999999999999999988766554
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.3e-17 Score=156.89 Aligned_cols=286 Identities=12% Similarity=0.020 Sum_probs=193.6
Q ss_pred CCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCchHHHHHH
Q 043362 44 EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KGLITWNAMI 120 (516)
Q Consensus 44 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li 120 (516)
+.+...+..+...+...|++++|.++++.+++.. +.+...+..++..+.+.|++++|..+|+++.+ .+..+|..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3444455555555556666666666666666554 34444555566666666666666666665543 2345666666
Q ss_pred HHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCH
Q 043362 121 SGYAQNG-LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199 (516)
Q Consensus 121 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 199 (516)
..+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 6777777777766542 2245566666677777777777777777776654 23445566677777777777
Q ss_pred HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHhccCChHHH
Q 043362 200 KKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--------IRPDGTAFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 200 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a 268 (516)
++|.+.|++.. ..+...|..+...|...|++++|...|++..+.. .+.+..++..+...+...|++++|
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777654 2356777888888888888888888888876631 133456788888888999999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHH-HhcCCHH
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGAC-KIHKNVE 334 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~-~~~g~~~ 334 (516)
...+++..+.. +.+...+..+...|.+.|++++|.+.+++.. ..| +...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999888641 3356788888999999999999999999886 455 577777777766 4555543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=7e-18 Score=164.52 Aligned_cols=280 Identities=13% Similarity=-0.023 Sum_probs=219.1
Q ss_pred HHcCCHHHHHH-HHcccCCC-------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 043362 93 VKCGSVDYGRK-LFDQVPEK-------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 93 ~~~g~~~~A~~-~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 164 (516)
.-.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 77654321 24567888888889999999999999888763 44667888888888889999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHH---------------HHHHHHh
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTA---------------IIGGYGI 226 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~---------------li~~~~~ 226 (516)
++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999998888865 456778888888899999999998888876421 2222221 1333448
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
.|++++|+..|+++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999998853221 4788999999999999999999999999864 2335788999999999999999999
Q ss_pred HHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----------ccchHHHhhHHHHcCChhHHHH
Q 043362 306 ELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN-----------TGYYVLLSNIYSEARNLDGIMR 372 (516)
Q Consensus 306 ~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 372 (516)
..++++. ..| +..+|..+...+...|++++|...+++++++.|++ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999876 344 58899999999999999999999999999988877 7789999999999999999998
Q ss_pred HHHH
Q 043362 373 VRMM 376 (516)
Q Consensus 373 ~~~~ 376 (516)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=7.7e-16 Score=156.47 Aligned_cols=352 Identities=13% Similarity=0.067 Sum_probs=298.0
Q ss_pred CCcccHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhc----CCCchHHHHHHHHHHHhCCCCC
Q 043362 10 HLTVCYNALISGYVL----NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD----PGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 10 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
.|+.++..|-..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366777778888888 899999999999998875 45677777777877 899999999999998875 6
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHcccCCCC-chHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043362 82 FSVGNCLMTMYVK----CGSVDYGRKLFDQVPEKG-LITWNAMISGYAQ----NGLATHVLELYREMKSLGVCPDAVTFV 152 (516)
Q Consensus 82 ~~~~~~ll~~~~~----~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 152 (516)
...+..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777889999998 889999999999876654 5688888888888 789999999999998865 677788
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----CCCHHHHHHHHhcCCC-CCHhHHHHHHHH
Q 043362 153 GVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR----CGNLKKARAIFDGMPR-KTVVSWTAIIGG 223 (516)
Q Consensus 153 ~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~ 223 (516)
.+...+.. .++.++|...+++..+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888887 899999999999999876 56778889999987 8999999999998654 467778888888
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 224 YGI----HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA-----GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 224 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+|.+..+. + +...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 888 899999999999998764 455667777777776 8999999999999864 2 56778888888
Q ss_pred HHhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH----
Q 043362 295 LGRAG---QLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE---- 363 (516)
Q Consensus 295 ~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 363 (516)
|...| ++++|.+.|++.....+...+..|...|.. .+++++|...++++.+.+ ++.++..|+.+|.+
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88867 789999999988644678899999999988 899999999999998865 46789999999998
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 043362 364 ARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 364 ~g~~~~a~~~~~~m~~~~~ 382 (516)
.++.++|...+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.7e-16 Score=147.97 Aligned_cols=268 Identities=10% Similarity=-0.007 Sum_probs=216.6
Q ss_pred HHHcCCHHHHHHHHcccCCCCc----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 92 YVKCGSVDYGRKLFDQVPEKGL----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
....|+++.|...++.....+. .....+..+|...|++++|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4457999999999888766543 3556678899999999999986654 2356777888888899999999999
Q ss_pred HHHHHHHHHcCC-CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043362 168 LEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246 (516)
Q Consensus 168 ~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 246 (516)
.+.++.+...+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 999999988764 44577788888999999999999999998 567889999999999999999999999999986 3
Q ss_pred CCHHHH---HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHH
Q 043362 247 PDGTAF---VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWG 321 (516)
Q Consensus 247 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 321 (516)
|+.... ...+..+...|++++|..+|+++.+. .+.++..++.+...+.+.|++++|...+++.. ..| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 554321 12334445669999999999999975 34578899999999999999999999999976 456 688999
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHH
Q 043362 322 ALLGACKIHKNVEL-AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 322 ~ll~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
.++..+...|+.++ +..+++++++++|+++. +.....+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHH
Confidence 99999999998865 67899999999999874 33455566666655543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=1.7e-17 Score=161.76 Aligned_cols=276 Identities=12% Similarity=-0.043 Sum_probs=216.4
Q ss_pred CHHHHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043362 97 SVDYGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173 (516)
Q Consensus 97 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 173 (516)
....+...+...+. .+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp -------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444443332 234668889999999999999999999998753 44677888999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC-------------HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT-------------VVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 174 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
+.+.. +.+..++..+...|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|+..|+++
T Consensus 125 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 125 CLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 98874 4567889999999999999999999998875321 223344578899999999999999999
Q ss_pred HHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CH
Q 043362 241 LKSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DG 317 (516)
Q Consensus 241 ~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~ 317 (516)
.+.... ++..++..+...+...|++++|...|+++.+. .+.+...|..+...|.+.|++++|...|+++. ..| +.
T Consensus 204 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Confidence 986422 16788999999999999999999999999865 23468899999999999999999999999876 445 58
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------------CccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPM------------NTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.+|..+...|...|++++|...+++++++.|+ +...+..+..++...|+.+.+.++.+.
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 89999999999999999999999999998766 356788999999999999988877654
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.2e-18 Score=168.23 Aligned_cols=281 Identities=10% Similarity=0.068 Sum_probs=134.5
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHH
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 138 (516)
+.|++++|.+.++.+ +++.+|..|..++.+.|++++|.+.|.+. +|..+|..++.++.+.|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456788888888776 23358889999999999999999999764 5666888888899999999999997766
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHH
Q 043362 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218 (516)
Q Consensus 139 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 218 (516)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 6653 4557788888999999999998887774 366778999999999999999999999977 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 043362 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298 (516)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 298 (516)
.++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHC
Confidence 9999999999999999999987 2678999999999999999999655443 223555566788999999
Q ss_pred CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhcCC-----CCccchHHHhhHHHHcCChhH
Q 043362 299 GQLNEALELIESML-VEP-DGAVWGALLGACKIH--KNVELAELAFGKVIKLEP-----MNTGYYVLLSNIYSEARNLDG 369 (516)
Q Consensus 299 g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~ 369 (516)
|++++|..+++... .++ ....|+-|.-+|++. ++..+.+++|..-+.+.| .+...|..+...|.+-++++.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999999998876 333 477777777777665 455666666665555556 677889999999999999998
Q ss_pred HHHH
Q 043362 370 IMRV 373 (516)
Q Consensus 370 a~~~ 373 (516)
|..+
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=3.7e-15 Score=151.42 Aligned_cols=335 Identities=13% Similarity=0.034 Sum_probs=281.0
Q ss_pred CCcccHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhc----CCCchHHHHHHHHHHHhCCCCC
Q 043362 10 HLTVCYNALISGYVL----NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD----PGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 10 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
-++.++..|-..|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|...++...+.| +
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 146 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---R 146 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 356778888888988 899999999999998875 55666677777776 789999999999998876 5
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHcccCCC-CchHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043362 82 FSVGNCLMTMYVK----CGSVDYGRKLFDQVPEK-GLITWNAMISGYAQ----NGLATHVLELYREMKSLGVCPDAVTFV 152 (516)
Q Consensus 82 ~~~~~~ll~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 152 (516)
...+..|..+|.. .++.++|.+.|++..+. +..++..+...|.+ .+++++|++.|++..+.| +..++.
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 223 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQL 223 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778888999988 78999999999987654 46788889999988 899999999999998865 556777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----CCCHHHHHHHHhcCCC-CCHhHHHHHHHH
Q 043362 153 GVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR----CGNLKKARAIFDGMPR-KTVVSWTAIIGG 223 (516)
Q Consensus 153 ~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~ 223 (516)
.+...+.. .+++++|...+++..+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+...
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777775 789999999999999875 55677788888888 8999999999998764 467788888888
Q ss_pred HHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 224 YGIH-----GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 224 ~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .++..+..|..+|
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNAL 373 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 8887 89999999999999865 4556677777777656 789999999999864 3688888999999
Q ss_pred Hh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC---CccchHHHhhHHHH
Q 043362 296 GR----AGQLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPM---NTGYYVLLSNIYSE 363 (516)
Q Consensus 296 ~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 363 (516)
.. .+++++|.+.|++.....+...+..|...|.. .++.++|...|+++.+.+|+ ++.....+..++..
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 98 89999999999988644578888889988887 89999999999999999854 66677777777654
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=4.1e-16 Score=157.49 Aligned_cols=365 Identities=10% Similarity=-0.059 Sum_probs=248.1
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHC-----C---CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC-----
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQ-----G---VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG----- 77 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 77 (516)
.+..||.|...+...|++++|++.|++..+. + .+....+|..+..++...|++++|...++.+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999887542 1 12235678899999999999999999998887641
Q ss_pred -C-CCChhHHHHHHHHHHHcC--CHHHHHHHHcccCC--C-CchHHHHHHHH---HHHcCChhHHHHHHHHHHHCCCCCC
Q 043362 78 -L-DLDFSVGNCLMTMYVKCG--SVDYGRKLFDQVPE--K-GLITWNAMISG---YAQNGLATHVLELYREMKSLGVCPD 147 (516)
Q Consensus 78 -~-~~~~~~~~~ll~~~~~~g--~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 147 (516)
. .....+++.+..++.+.| ++++|...|++..+ | +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 123456666666666654 68999999998754 3 34455555544 345678889999999887753 335
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHH
Q 043362 148 AVTFVGVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAI 220 (516)
Q Consensus 148 ~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~l 220 (516)
..++..+...+.. .+++++|.+.+++..+.. +.+..++..+...|.+.|++++|.+.|++.. ..+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 5566666555554 457788999999988865 4567888999999999999999999998865 2356667766
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 043362 221 IGGYGIH-------------------GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281 (516)
Q Consensus 221 i~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 281 (516)
...|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++..+.
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--- 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK--- 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---
Confidence 6665432 23567888888877753 334567788889999999999999999998854
Q ss_pred CCCHH----HHHHHHH-HHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 282 QPGPE----HYTCMVD-LLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 282 ~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
.|+.. .+..+.. .+...|+.++|...+++.. ..|+...+... ...+..++++.++.+|+++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 33332 2233333 2346799999999998875 56664433222 34566778888889999999999
Q ss_pred HHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeE
Q 043362 356 LLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 390 (516)
.|+.+|...|++++|.+.+++..+.+-..+...+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999998876544444555
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=5.7e-17 Score=158.07 Aligned_cols=263 Identities=11% Similarity=-0.007 Sum_probs=184.1
Q ss_pred ChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCchHHHHHHHH
Q 043362 46 NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KGLITWNAMISG 122 (516)
Q Consensus 46 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 122 (516)
+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456666666777777777777777777665 45666777777777777777777777776543 234677777777
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CchHHHHHHH
Q 043362 123 YAQNGLATHVLELYREMKSLGVCPDA-----------VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNALI 190 (516)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li 190 (516)
|.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...++++.+.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 77777777777777777653 2321 22233466777888888888888888776422 1577788888
Q ss_pred HHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 043362 191 NMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 267 (516)
..|.+.|++++|.+.|++.. ..+..+|+.+..+|...|++++|+..|+++.+.. +.+..++..+..+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 88888888888888887754 3467788888888888888888888888887752 3346778888888888899999
Q ss_pred HHHHHHHhHHhcCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 268 GLEYFYGMKNKYGLQ----------PGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 268 a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
|...|+++.+...-. .+...|..+...+...|+.+.|..+.++-+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 988888887542110 135778899999999999999998887643
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.3e-17 Score=158.23 Aligned_cols=295 Identities=11% Similarity=-0.002 Sum_probs=138.5
Q ss_pred hCCCchHHHH-HHHHhHHCCC-CC--ChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 043362 24 LNSLVSEAVS-LFGKMREQGV-EI--NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD 99 (516)
Q Consensus 24 ~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 99 (516)
..|++++|++ .|++...... .| +...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455555555 5554432210 01 23345555555566666666666666666553 444555566666666666666
Q ss_pred HHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043362 100 YGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 100 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 175 (516)
+|...|+++.+ .+..+|..+...|...|++++|++.|+++.... |+. ..+..+... .
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~---------- 176 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------A---------- 176 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------h----------
Confidence 66666655432 233455556666666666666666666655532 221 111100000 0
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC--CC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 250 (516)
+.......+..+...+ ..|++++|.+.|+++. .| +..+|..+...|.+.|++++|+..|+++.... +.+..
T Consensus 177 --~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 177 --GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred --hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0000000000112222 4455555555554432 11 24455555555555555555555555555431 22344
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-C-----------H
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-D-----------G 317 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~-----------~ 317 (516)
++..+...+...|++++|...++++.+. -+.+...+..+...|.+.|++++|...++++. ..| + .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 5555555555556666666555555542 12234555555566666666666665555543 111 1 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
.+|..+..++...|+.++|..++++.+
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 566666666666666666666655433
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.4e-16 Score=152.28 Aligned_cols=259 Identities=8% Similarity=-0.046 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 193 (516)
..|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555556666666666666666655532 2244555555566666666666666666665543 33455566666666
Q ss_pred HhCCCHHHHHHHHhcCCC---CCHhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043362 194 ARCGNLKKARAIFDGMPR---KTVVSWTAI--------------IG-GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255 (516)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 255 (516)
...|++++|.+.|+++.+ .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666666655431 122222222 22 3677889999999999998863 3467888899
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCH
Q 043362 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNV 333 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~ 333 (516)
...+...|++++|...+..+.+. .+.+...+..+...|...|++++|.+.++++. ..| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999864 23357889999999999999999999999876 334 588999999999999999
Q ss_pred HHHHHHHHHHhhcCCC------------CccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 334 ELAELAFGKVIKLEPM------------NTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
++|...++++.+..|+ +...+..++.+|.+.|++++|..+++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999998 6788999999999999999999988644
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=4.1e-15 Score=152.67 Aligned_cols=364 Identities=10% Similarity=0.002 Sum_probs=242.8
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
|+.+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|+.+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 7789999998 578999999999999999762 4456678889999999999999999999998874 57778887775
Q ss_pred HH-HHcCCHHHHHH----HHcccC-----C-CCchHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHHH
Q 043362 91 MY-VKCGSVDYGRK----LFDQVP-----E-KGLITWNAMISGYAQ---------NGLATHVLELYREMKSLGVCPDAVT 150 (516)
Q Consensus 91 ~~-~~~g~~~~A~~----~f~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t 150 (516)
.. ...|+++.|.+ +|++.. . .+...|...+....+ .|++++|..+|++..+....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45677776655 666542 1 234678777776654 6889999999999887311111233
Q ss_pred HHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCCc--------hHHHHHHHHHHHhC----
Q 043362 151 FVGVLSSC-------------AHLGAHSVGLEVEQQIQ------ANG---FGSN--------PFLNNALINMYARC---- 196 (516)
Q Consensus 151 ~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~li~~y~~~---- 196 (516)
|....... ...+.+..|..++.... +.. ++|+ ...|...+..-...
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 33222111 12345566666665532 111 2332 23555555433221
Q ss_pred CCH----HHHHHHHhcCC---CCCHhHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHH
Q 043362 197 GNL----KKARAIFDGMP---RKTVVSWTAIIGGYGI-------HGHGE-------VAVQLFDEMLKSGIRPDGTAFVSV 255 (516)
Q Consensus 197 g~~----~~A~~~~~~m~---~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~l 255 (516)
++. +.|..+|++.. ..+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...+..+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 222 35566666654 2356777777777765 67766 788888877652123346677777
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHH-HHhc
Q 043362 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPG-P-EHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGA-CKIH 330 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~-~~~~ 330 (516)
+..+...|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++.. ..|+ ...|...... +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence 77778888888888888888753 443 2 477777777778888888888888765 2232 2222222212 3357
Q ss_pred CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 888888888888888888888888888888888888888888888877653
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=2.2e-16 Score=150.88 Aligned_cols=276 Identities=8% Similarity=-0.076 Sum_probs=176.2
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
.+...|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 366777788888888888888888888887763 3456667777777778888888888888877764 45566677777
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCh
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS--SCAHLGAH 164 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~ 164 (516)
..|.+.|++++|.+.|+++.+.+. ..+..+... .|+......+.. .+...|++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 777777777777777766543221 222222000 011111111101 24455666
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|...|+++.
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666543 2345566666666666666666666666543 2345667777777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-----------GPEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 242 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
+.. +.+..++..+...+...|++++|...++++.+.. ... +...+..+...|.+.|+.++|..++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 642 3346667777777778888888888887776541 110 356777888888888888888888776
Q ss_pred cC
Q 043362 311 ML 312 (516)
Q Consensus 311 m~ 312 (516)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 54
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=4.5e-16 Score=146.53 Aligned_cols=246 Identities=10% Similarity=0.023 Sum_probs=203.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 043362 120 ISGYAQNGLATHVLELYREMKSLGVCPDA--VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 197 (516)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456678999999999887644 34554 3556678899999999999976644 24567888899999999999
Q ss_pred CHHHHHHHHhcCC----CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 198 NLKKARAIFDGMP----RK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 198 ~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566778888999999999999999987 467788889999999999999999999
Q ss_pred HHhHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 273 YGMKNKYGLQPGPEH---YTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
+.+.+. .|+... ...++..+...|++++|..+|+++. ...+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 455321 2234455556699999999999986 33478999999999999999999999999999999
Q ss_pred CCCccchHHHhhHHHHcCChhH-HHHHHHHHHhC
Q 043362 348 PMNTGYYVLLSNIYSEARNLDG-IMRVRMMMRER 380 (516)
Q Consensus 348 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 380 (516)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888888753
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=3.6e-18 Score=177.51 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=130.9
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC-------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043362 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMP-------RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251 (516)
Q Consensus 179 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 251 (516)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCh-HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CCHHHHHHHHHH
Q 043362 252 FVSVLSACSHAGLT-DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE----PDGAVWGALLGA 326 (516)
Q Consensus 252 ~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll~~ 326 (516)
|+++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....+.+-++...++...+... |...+...|...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999999984 7899999999987 99999999999998887765555554443333211 113344445555
Q ss_pred HHhcC---------CHHHHHHHHHHHhh
Q 043362 327 CKIHK---------NVELAELAFGKVIK 345 (516)
Q Consensus 327 ~~~~g---------~~~~A~~~~~~~~~ 345 (516)
|.+.+ ..++-...|++-+.
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql~ 309 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQLH 309 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 66544 34566666665543
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=172.48 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=125.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccC-------CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVP-------EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 153 (516)
-..+||+||++|+++|++++|.++|++|. .+|++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997763 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHhc
Q 043362 154 VLSSCAHLGAH-SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK-----TVVSWTAIIGGYGIH 227 (516)
Q Consensus 154 ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~ 227 (516)
+|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+..+ .+.+...+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999999888876666666665555421 123333445555544
Q ss_pred C
Q 043362 228 G 228 (516)
Q Consensus 228 g 228 (516)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=4.7e-14 Score=144.78 Aligned_cols=340 Identities=11% Similarity=0.032 Sum_probs=246.0
Q ss_pred HHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC--CC
Q 043362 35 FGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KG 112 (516)
Q Consensus 35 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~ 112 (516)
|++.++.. +-|..+|..++.. .+.|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|.++|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 34444432 4466788888884 67899999999999999874 67788999999999999999999999999865 45
Q ss_pred chHHHHHHHH-HHHcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHH
Q 043362 113 LITWNAMISG-YAQNGLATHVLE----LYREMKS-LGVCP-DAVTFVGVLSSCAH---------LGAHSVGLEVEQQIQA 176 (516)
Q Consensus 113 ~~~~~~li~~-~~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~ 176 (516)
+..|...+.. ....|+.++|.+ +|++... .|..| +...|...+..... .|+++.|+.+|++.++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 5677777653 345678777665 7776654 35544 45566666665544 6889999999999998
Q ss_pred cCCCCchHHHHHHHHHH-------------HhCCCHHHHHHHHhc-------CC------CCC--------HhHHHHHHH
Q 043362 177 NGFGSNPFLNNALINMY-------------ARCGNLKKARAIFDG-------MP------RKT--------VVSWTAIIG 222 (516)
Q Consensus 177 ~g~~~~~~~~~~li~~y-------------~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~ 222 (516)
.........|....... .+.++++.|..++.. +. .|+ ...|...+.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 42222234444333211 134567777766553 11 111 346666664
Q ss_pred HHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHhHHhcC
Q 043362 223 GYGIH----GHG----EVAVQLFDEMLKSGIRPDGTAFVSVLSACSH-------AGLTD-------KGLEYFYGMKNKYG 280 (516)
Q Consensus 223 ~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~~~~~~~ 280 (516)
-.... ++. ..|..+|++.... .+-+...|..+...+.. .|+++ +|..++++..+ .
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~--~ 315 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--T 315 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--T
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--H
Confidence 43332 232 4788899998875 24456778777777765 79987 99999999984 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 281 LQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-G-AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 281 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
+.| +...|..++..+.+.|++++|.++|+++. ..|+ . ..|..++..+.+.|++++|..+|+++++..|.+...|..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 445 58889999999999999999999999886 4564 3 589999999999999999999999999988876666655
Q ss_pred HhhH-HHHcCChhHHHHHHHHHHhC
Q 043362 357 LSNI-YSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 357 l~~~-~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+.+ +...|+.++|..+|+...+.
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHH
Confidence 4444 34689999999999988764
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=2.4e-13 Score=146.04 Aligned_cols=321 Identities=12% Similarity=0.131 Sum_probs=234.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCC--CCChhhHHHHH---------------------------HHhhcCCCchHH
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGV--EINSVTMLCLL---------------------------PICVDPGYLWLG 66 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll---------------------------~~~~~~~~~~~a 66 (516)
...+.+|...|.+.+|++++++....+- .-+...-+.++ ..+...|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 4578899999999999999999985421 01122222222 233344555555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 043362 67 MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146 (516)
Q Consensus 67 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 146 (516)
..+|+... ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -
T Consensus 1069 f~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 55555431 1111112222 25566666666666553 2467888999999999999999998653 4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 043362 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226 (516)
Q Consensus 147 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 226 (516)
|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++...+. ..++...|..+...|..
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHh
Confidence 67778889999999999999999998887754 34334445888899999988654443 35566777788888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
.|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..++...|++..|..
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999874 378889999999999999999888763 56888888888888999999988
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc--CChhHHHHHHH
Q 043362 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA--RNLDGIMRVRM 375 (516)
Q Consensus 307 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 375 (516)
....+. -+...+..++..|...|.+++|+.+++..++++|.+...|..|+.+|++- ++..++.++|.
T Consensus 1272 cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1272 CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 877643 35556668889999999999999999999999998888888888888764 34445555544
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.4e-14 Score=133.11 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG--SNPFLNNALINM 192 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~ 192 (516)
.|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|...+..+.+.... ++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45555555555555555555555555543 44445555555555555555555555554442100 0000
Q ss_pred HHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
....+|..+...|...|++++|+..|++.... .|+. ..+...|++++|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00345666666666777777777777776663 3442 2344556677777777
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
+.+... .+.+...+..+...+...|++++|...+++.. ..| +..+|..+...+...|++++|...++++++..|++
T Consensus 129 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 129 EAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 777642 12245566777777778888888888777765 223 57777778888888888888888888888888888
Q ss_pred ccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+.++..++.+|...|++++|.+.++...+
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888888888888877764
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=8.5e-15 Score=134.65 Aligned_cols=233 Identities=10% Similarity=0.028 Sum_probs=157.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCC--CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC----HHHHHH
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMKSLG--VCPD----AVTFVG 153 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 153 (516)
...+..+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999987633 567889999999999999999999999987642 1122 467777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 233 (516)
+...+...|++++|...++.+.+.. |+. ..+ ...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~-------------------------------~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DIL-------------------------------TKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHH-------------------------------HHHhHHHHH
Confidence 8888888888888888888887753 231 223 333444555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 043362 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML- 312 (516)
Q Consensus 234 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 312 (516)
...++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555554421 112334555555566666666666666666543 12245566666666677777777777666654
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCccchHHH
Q 043362 313 VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLE------PMNTGYYVLL 357 (516)
Q Consensus 313 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l 357 (516)
..| +..+|..+...+...|++++|...++++.++. |++...+..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 233 46677777777777788888888877777776 6555444433
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=3.4e-13 Score=144.88 Aligned_cols=317 Identities=12% Similarity=0.097 Sum_probs=252.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 94 (516)
...+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+.+ .+..+|..+..++.+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 3445677888999999999999862 11122233333 567899998888754 457889999999999
Q ss_pred cCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 174 (516)
.|++++|...|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.+++++...+.
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 99999999999764 667889999999999999999999999877654 44333445889999999988644442
Q ss_pred HHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043362 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254 (516)
Q Consensus 175 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 254 (516)
+ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 2 345566778999999999999999999985 58999999999999999999999976 35689999
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh--c
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKI--H 330 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~--~ 330 (516)
+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|..+++... .+| ....|+-|...+.+ .
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 999999999999998876543 3467788899999999999999999998875 333 35566666666654 4
Q ss_pred CCHHHHHHHHHHHhhcCC-----CCccchHHHhhHHHHcCChhHHHHH
Q 043362 331 KNVELAELAFGKVIKLEP-----MNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
++..++.++|..-..+.| .+...|..++..|.+.|+++.|...
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 567777777776666555 5677899999999999999999854
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2.5e-14 Score=128.45 Aligned_cols=194 Identities=11% Similarity=0.022 Sum_probs=147.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 256 (516)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45566777777778888888888888876542 356777888888888888888888888887753 33456777778
Q ss_pred HHHhcc-----------CChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 043362 257 SACSHA-----------GLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGAL 323 (516)
Q Consensus 257 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 323 (516)
.++... |++++|...+++..+. .| +...+..+...|...|++++|...|++.. ...+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999998864 44 57788889999999999999999998876 22678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
...+...|++++|+..++++++.+|+++..+..++.++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=7.1e-14 Score=129.93 Aligned_cols=241 Identities=12% Similarity=-0.067 Sum_probs=181.2
Q ss_pred HcCChhHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHH
Q 043362 125 QNGLATHVLELYREMKSLGV--CP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201 (516)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 201 (516)
..|++++|+..|+++.+... +| +..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677888888888876531 11 34567777778888888888888888888764 3467788888888888888888
Q ss_pred HHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 202 ARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 202 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|.+.|++.. ..+..+|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888888765 236778888899999999999999999998884 455555555555667779999999999888764
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 279 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
.+++...+ .++..+...++.++|.+.+++.. ..|+ ..+|..+...+...|++++|...++++++..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23333333 46777788888899999998876 2221 578888999999999999999999999999987643
Q ss_pred chHHHhhHHHHcCChhHHHHHH
Q 043362 353 YYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 353 ~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
....++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466778888888887765
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=4.5e-14 Score=126.76 Aligned_cols=195 Identities=10% Similarity=-0.051 Sum_probs=140.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 477788889999999999999999999998764 4566778888888999999999999999999886 66777888888
Q ss_pred HHHHHc-----------CCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043362 90 TMYVKC-----------GSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155 (516)
Q Consensus 90 ~~~~~~-----------g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 155 (516)
..|.+. |++++|...|++..+. +...|..+...|...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 7778877777776432 34567777777777777777777777777665 5666777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 156 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
.++...|++++|...++++++.. +.+..++..+...|.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777777754 345666677777777777777777776654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1e-13 Score=128.77 Aligned_cols=246 Identities=11% Similarity=0.005 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSC 158 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 158 (516)
++......|.+.|++++|...|++..+. +..+|..+...|...|++++|+..|++..+.+-.|+ ..+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445566677777777777777765432 245677777777777777777777777766321111 22366666777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHH-HHHHhcCCHHHHH
Q 043362 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAII-GGYGIHGHGEVAV 234 (516)
Q Consensus 159 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li-~~~~~~g~~~~A~ 234 (516)
...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|++..+ .+...|..+. ..|. .+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHH
Confidence 77777777777777777653 33456666777777777777777777766553 2444555555 3333 34666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGL---TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 311 (516)
..|++..+.. +.+...+..+...+...|+ +++|...++++.+. ....
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~ 212 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV-----------------------------CAPG 212 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH-----------------------------HGGG
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-----------------------------Hhcc
Confidence 6666655531 1123334444444444443 33344444333321 1111
Q ss_pred CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 312 LVEPD------GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 312 ~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
|+ ..+|..+...|...|++++|...++++++++|+++.+...+.......
T Consensus 213 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 213 ---GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp ---GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ---cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 22 246677778888899999999999999999999887776666555443
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=5.9e-13 Score=134.24 Aligned_cols=332 Identities=8% Similarity=-0.043 Sum_probs=215.3
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHC-----C-CCC-ChhhHHHHHHHhh--cCCCchHHHHHHHHHHHhCCCCC
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQ-----G-VEI-NSVTMLCLLPICV--DPGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
..++|+.+...|...|++++|...|++..+. + ..+ ...++.....++. ..+++++|+..|+.+++.. +.+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4678999999999999999999999887642 1 112 2345555544443 3467899999999999886 555
Q ss_pred hhHHHHHHHHH---HHcCCHHHHHHHHcccCC---CCchHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 043362 82 FSVGNCLMTMY---VKCGSVDYGRKLFDQVPE---KGLITWNAMISGYAQ----NGLATHVLELYREMKSLGVCPDAVTF 151 (516)
Q Consensus 82 ~~~~~~ll~~~---~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 151 (516)
+..+..+...+ ...++.++|.+.|++..+ .+..++..+...+.. .|++++|.+.+++..... +.+...+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 66666666554 455777788888776543 234566666555544 467889999999987753 4567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC-------------------CCHHHHHHHHhcCC--
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC-------------------GNLKKARAIFDGMP-- 210 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-------------------g~~~~A~~~~~~m~-- 210 (516)
..+...+...|++++|...+.++.+.. +.+..++..+...|... +.++.|...|++..
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 899999999999999999999999874 44567777777766432 23556777776553
Q ss_pred -CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCChHHHHHHHHHhHHhcCCCCCHH
Q 043362 211 -RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT--AFVSVLS-ACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286 (516)
Q Consensus 211 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 286 (516)
..+..+|..+...|...|++++|+..|++..+....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccH
Confidence 3456788899999999999999999999998864433321 2222222 34578999999999999885 455543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
...... +.+.++++... ..| +..+|..|...|...|++++|+..|+++++++|.++.+...+
T Consensus 407 ~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 407 EKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 322222 23333443332 234 678999999999999999999999999999998887665544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1.9e-12 Score=120.49 Aligned_cols=225 Identities=13% Similarity=-0.013 Sum_probs=138.9
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHHHHH
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFLNNA 188 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 188 (516)
..++..+...|...|++++|+..|++..+. -+..++..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 345555666666666666666666666552 234455555556666 666666666666666654 4555556
Q ss_pred HHHHHHh----CCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043362 189 LINMYAR----CGNLKKARAIFDGMPR-KTVVSWTAIIGGYGI----HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259 (516)
Q Consensus 189 li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 259 (516)
|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 6666666 6666666666655432 245556666666666 667777777777766654 344555555566
Q ss_pred hc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 043362 260 SH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AGQLNEALELIESMLVEPDGAVWGALLGACKI-- 329 (516)
Q Consensus 260 ~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-- 329 (516)
.. .+++++|..+|++..+. .++..+..+...|.. .+++++|.+.+++.....+...+..+...|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 55 67777777777766643 245556666666666 67777777777665422235566666666666
Q ss_pred --cCCHHHHHHHHHHHhhcCCCC
Q 043362 330 --HKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 330 --~g~~~~A~~~~~~~~~~~p~~ 350 (516)
.+++++|...++++.+.+|++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHH
Confidence 677777777777777766654
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.7e-13 Score=124.79 Aligned_cols=213 Identities=14% Similarity=0.106 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 193 (516)
.+|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------
Confidence 445555555666666666666666655431 2234444445555555555555555555544432
Q ss_pred HhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043362 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273 (516)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 273 (516)
..+..+|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++
T Consensus 88 -----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 88 -----------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred -----------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1234445555555556666666666666655542 2345556666666666777777777776
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 274 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
++.+. .+.+...+..+...|.+.|++++|.+.++++. ..| +..+|..+...+...|++++|...++++.+..|+++
T Consensus 150 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 150 RAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 66643 12345666677777777777777777777654 223 467777788888888888888888888888888877
Q ss_pred cchHHHhhHHH
Q 043362 352 GYYVLLSNIYS 362 (516)
Q Consensus 352 ~~~~~l~~~~~ 362 (516)
..+..+..+..
T Consensus 228 ~~~~~~~~l~~ 238 (243)
T 2q7f_A 228 LALHAKKLLGH 238 (243)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHHHh
Confidence 66666655543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=9.8e-13 Score=120.61 Aligned_cols=206 Identities=15% Similarity=0.039 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 192 (516)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~----- 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN----- 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH-----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH-----
Confidence 3566666777777777777777777766542 2345555555666666666666666666655542 12333344
Q ss_pred HHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHH
Q 043362 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
.+...|...|++++|.+.|+++...+..| +...+..+...+...|++++|..+
T Consensus 110 --------------------------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 110 --------------------------NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------------HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444445555555555444422223 233445555555666666666666
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
+.++.+. .+.+...+..+...|...|++++|...++++. .. .+...+..+...+...|+.++|...++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6665543 12235566666666777777777777776654 22 34666666777777777777777777777777777
Q ss_pred Cccc
Q 043362 350 NTGY 353 (516)
Q Consensus 350 ~~~~ 353 (516)
++..
T Consensus 242 ~~~~ 245 (252)
T 2ho1_A 242 SLEY 245 (252)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6543
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=1.7e-12 Score=116.42 Aligned_cols=199 Identities=12% Similarity=-0.057 Sum_probs=104.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhc-CC
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIH-GH 229 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g~ 229 (516)
+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++++|.+.|+++. ..+..+|..+...|... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3333333344444444443333321 1223333344444444444444444443332 12344455555555555 66
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 230 GEVAVQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
+++|...|+++.+.+..|+ ...+..+...+...|++++|...+..+.+. .+.+...+..+...|.+.|++++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666555222232 345555566666666666666666666543 1223555666666666667777776666
Q ss_pred HhcC-C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 309 ESML-V-E-PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 309 ~~m~-~-~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
+++. . . .+...+..+...+...|+.+.|...++.+.+..|+++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6654 2 2 34555655666666777777777777777767776654433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=3.1e-12 Score=119.02 Aligned_cols=224 Identities=15% Similarity=0.030 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----CCCHHHHHHHHhcCCC-CCHhHHHHHH
Q 043362 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR----CGNLKKARAIFDGMPR-KTVVSWTAII 221 (516)
Q Consensus 147 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 221 (516)
+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .|++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55677788888999999999999999999843 56788889999999 9999999999988653 3778899999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 222 GGYGI----HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 222 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888899998 99999999999999864 3 6777888889
Q ss_pred HHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH--
Q 043362 294 LLGR----AGQLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE-- 363 (516)
Q Consensus 294 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 363 (516)
.|.. .+++++|...+++.....+...+..+...|.. .+++++|...++++.+.+| +..+..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987634567888889999999 9999999999999999876 5688899999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 043362 364 --ARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 364 --~g~~~~a~~~~~~m~~~~~ 382 (516)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1e-12 Score=117.89 Aligned_cols=199 Identities=13% Similarity=0.060 Sum_probs=174.0
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 256 (516)
+.+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.... +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3456778889999999999999999998765 3467889999999999999999999999998863 44677888999
Q ss_pred HHHhcc-CChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043362 257 SACSHA-GLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN 332 (516)
Q Consensus 257 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~ 332 (516)
..+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.++++. ..| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999986 233443 6788899999999999999999999876 334 58889999999999999
Q ss_pred HHHHHHHHHHHhhcCC-CCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 333 VELAELAFGKVIKLEP-MNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+++|...++++.+..| ++...+..+...+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 89888999999999999999999999998753
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=4.9e-13 Score=124.17 Aligned_cols=242 Identities=12% Similarity=-0.053 Sum_probs=175.4
Q ss_pred HHhCCCchHHHHHHHHhHHCCCC---CChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH
Q 043362 22 YVLNSLVSEAVSLFGKMREQGVE---INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV 98 (516)
Q Consensus 22 ~~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 98 (516)
+...|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999999876321 235677888888999999999999999999886 56788899999999999999
Q ss_pred HHHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043362 99 DYGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 99 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 175 (516)
++|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+....
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999988754 34678999999999999999999999998874 4554445555556677789999999998877
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC-------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT-------VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 248 (516)
... +++...+. ++..+...++.++|.+.++.....+ ..+|..+...|...|++++|...|++.... .|+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 753 33444443 6777777888888888887766542 356666777777777777777777777663 332
Q ss_pred HHHHHHHHHHHhccCChHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 112233444555555555443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=8.7e-13 Score=120.95 Aligned_cols=197 Identities=10% Similarity=-0.002 Sum_probs=168.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 259 (516)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4566777777888888888888877654 3366788888889999999999999999988763 34677888899999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 260 SHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A 336 (516)
...|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.++++. ..| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999986 23455 56778889999999999999999999876 334 588899999999999999999
Q ss_pred HHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
...++++.+..|++...+..++.+|...|++++|.++++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997643
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=7e-13 Score=129.07 Aligned_cols=244 Identities=10% Similarity=0.072 Sum_probs=199.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA-HSVGLEVEQQIQANGFGSNPFLNNALINM 192 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 192 (516)
.+|+.+...+.+.|++++|++.|++..+.. +-+...|..+..++...|+ +++|...++++++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 578888889999999999999999988753 3356788888889999996 999999999999875 4478889999999
Q ss_pred HHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCChHHH
Q 043362 193 YARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH-AGLTDKG 268 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a 268 (516)
|.+.|++++|...|+++. ..+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999998875 3477899999999999999999999999999863 3357788888888888 6665777
Q ss_pred -----HHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC--------
Q 043362 269 -----LEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAG--QLNEALELIESMLVEP-DGAVWGALLGACKIHK-------- 331 (516)
Q Consensus 269 -----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g-------- 331 (516)
+..+.+..+. .| +...|..+..+|...| ++++|.+.+.++...| +...+..+...|...|
T Consensus 255 ~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 4788888754 44 5678888888888888 6889999888875445 4788888888887764
Q ss_pred -CHHHHHHHHHHH-hhcCCCCccchHHHhhHHHH
Q 043362 332 -NVELAELAFGKV-IKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 332 -~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 363 (516)
..++|+.+++++ .+++|.....|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999888888877776553
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=3.1e-12 Score=118.65 Aligned_cols=228 Identities=7% Similarity=-0.042 Sum_probs=181.5
Q ss_pred hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC--CCc----hHHHHHH
Q 043362 47 SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGL----ITWNAMI 120 (516)
Q Consensus 47 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~----~~~~~li 120 (516)
...+......+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566778889999999999999999875 55666889999999999999999999988755 222 3589999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH-HHHHhCCCH
Q 043362 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI-NMYARCGNL 199 (516)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~y~~~g~~ 199 (516)
..|...|++++|+..|++..+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998853 3456788999999999999999999999998873 45677788888 5555 4699
Q ss_pred HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhccCChH
Q 043362 200 KKARAIFDGMP---RKTVVSWTAIIGGYGIHGH---GEVAVQLFDEMLKSG-IRPDG------TAFVSVLSACSHAGLTD 266 (516)
Q Consensus 200 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 266 (516)
++|.+.|++.. ..+...|..+...+...|+ +++|...|++..+.. ..|+. .++..+...|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999875 3356788888888888888 888999999887631 12331 45666777777778888
Q ss_pred HHHHHHHHhHHh
Q 043362 267 KGLEYFYGMKNK 278 (516)
Q Consensus 267 ~a~~~~~~~~~~ 278 (516)
+|...++++.+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888777754
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=7.5e-13 Score=132.66 Aligned_cols=343 Identities=11% Similarity=0.022 Sum_probs=231.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCc---hHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL---WLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 94 (516)
+...+.+.|++++|+.+|++..+.| .|+ .+..+...+...|+. ++|...++...+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-~~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-YSE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-CCT--GGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667788999999999999998876 333 334444555556777 8999999988754 55556667775555
Q ss_pred cC-----CHHHHHHHHcccCCCC-chHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043362 95 CG-----SVDYGRKLFDQVPEKG-LITWNAMISGYAQNGLATH---VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165 (516)
Q Consensus 95 ~g-----~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 165 (516)
.| ++++|...|++..+++ ..++..|...|...+...+ +.+.+.+....|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 55 7889999998876654 5678888888888765443 4555555554442 345556666777777554
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC---CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc----CCHHHHHH
Q 043362 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCG---NLKKARAIFDGMPR---KTVVSWTAIIGGYGIH----GHGEVAVQ 235 (516)
Q Consensus 166 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~ 235 (516)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44444333333222234448888999999999 99999999987653 3444446677777554 68999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--hccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 043362 236 LFDEMLKSGIRPDGTAFVSVLSA-C--SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG-----QLNEALEL 307 (516)
Q Consensus 236 ~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 307 (516)
.|++.. .| +...+..+... + ...+++++|..+|.+..+. | ++..+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 33 44555556555 3 5689999999999999864 4 6778888888887 55 99999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH----cCChhHHHHHHHHHHh
Q 043362 308 IESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE----ARNLDGIMRVRMMMRE 379 (516)
Q Consensus 308 ~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 379 (516)
|++.. ..+...+..|...|.. ..+.++|...|++..+.+ ++.....|+.+|.. ..+.++|...++...+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99998 5578888888877766 449999999999988754 45678889998875 4589999999999887
Q ss_pred CCC
Q 043362 380 RRL 382 (516)
Q Consensus 380 ~~~ 382 (516)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 664
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=4.1e-13 Score=122.25 Aligned_cols=197 Identities=11% Similarity=0.083 Sum_probs=154.5
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043362 181 SNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 257 (516)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3445666777778888888888888877642 367788888999999999999999999988863 346788888999
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVEL 335 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~ 335 (516)
.+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.++++. ..| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999875 23467889999999999999999999999876 334 68889999999999999999
Q ss_pred HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|...++++.+..|++..++..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998764
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=6.7e-13 Score=133.01 Aligned_cols=311 Identities=12% Similarity=0.055 Sum_probs=221.0
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH---HHHHHHHcccCCCCchHHHHHHHHHHHcC--
Q 043362 53 LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV---DYGRKLFDQVPEKGLITWNAMISGYAQNG-- 127 (516)
Q Consensus 53 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 127 (516)
+...+.+.|++++|.++++...+.| +...+..|..+|...|+. ++|...|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455667799999999999999887 334455677777788888 99999999988777778888887666665
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC----
Q 043362 128 ---LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS---VGLEVEQQIQANGFGSNPFLNNALINMYARCG---- 197 (516)
Q Consensus 128 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 197 (516)
++++|+..|++..+.|.. + .+..+...|...+..+ .+.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 788999999999987643 3 5566666666655433 3455555555555 3556777888888877
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CChHHHHH
Q 043362 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHG---HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA----GLTDKGLE 270 (516)
Q Consensus 198 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~ 270 (516)
+.+++..+++.....++.++..+...|...| +.++|++.|++..+.| .++...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 5666777787777777789999999999999 9999999999999987 45556556677777655 79999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Q 043362 271 YFYGMKNKYGLQPGPEHYTCMVDL-L--GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK-----NVELAELAFGK 342 (516)
Q Consensus 271 ~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~~ 342 (516)
+|++.. +-++..+..|..+ | ...|++++|.+.|++.....+...+..|...|. .| ++++|...|++
T Consensus 239 ~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 239 LLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 999886 2356677777777 4 468999999999998864457888888888877 55 99999999999
Q ss_pred HhhcCCCCccchHHHhhHHHH----cCChhHHHHHHHHHHhCCC
Q 043362 343 VIKLEPMNTGYYVLLSNIYSE----ARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 382 (516)
.. |.++.++..|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 313 Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 313 AV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred Hh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 88 7888899999999987 3489999999999887664
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=2.5e-13 Score=134.34 Aligned_cols=195 Identities=14% Similarity=0.028 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCC---------CHhHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMPRK---------TVVSWTAIIGGYGIHGH-----------------GEVAVQLFD 238 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 238 (516)
++..+...|...|++++|.+.|++..+. ...++..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3444444444444444444444433210 12345555555555666 666666655
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 239 EMLKS----GIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 239 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
+..+. +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54331 1111 1235566666777777777777777776543111111 2256677777888888888887777
Q ss_pred hcC-C---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------CccchHHHhhHHHHcCChhHHHHHHH
Q 043362 310 SML-V---EP----DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM------NTGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 310 ~m~-~---~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
+.. . .. ...++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 654 0 11 1456677777888888888888888888775432 23467788888888889888888888
Q ss_pred HHHh
Q 043362 376 MMRE 379 (516)
Q Consensus 376 ~m~~ 379 (516)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=4.4e-13 Score=132.01 Aligned_cols=262 Identities=16% Similarity=0.065 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CchHHHH
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSLGVCPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFG-SNPFLNN 187 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~ 187 (516)
......+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...++++.+. +.. ....++.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333444444444444444444444321 111 123334444444444444444444443321 101 1123444
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 043362 188 ALINMYARCGNLKKARAIFDGMPR-----KT----VVSWTAIIGGYGIHGH--------------------GEVAVQLFD 238 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 238 (516)
.+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 455555555555555555444321 11 2345555556666666 666666665
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 239 EMLKS----GIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 239 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
+.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 54331 11111 235566666777777777777777766543211122 2356667777777788877777776
Q ss_pred hcC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------ccchHHHhhHHHHcCChhHHHHHHH
Q 043362 310 SML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN------TGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 310 ~m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
+.. ..++ ..++..+...+...|++++|...++++.++.+.. ..++..++.+|...|++++|.+.++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 654 1112 4566677777788888888888888777654322 4467777888888888888888887
Q ss_pred HHHh
Q 043362 376 MMRE 379 (516)
Q Consensus 376 ~m~~ 379 (516)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.7e-12 Score=127.83 Aligned_cols=257 Identities=11% Similarity=-0.028 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCC---------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEK---------GLITWNAMISGYAQNGLATHVLELYREMKSLGV-CPD----AV 149 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~ 149 (516)
++..+...|...|++++|...|++..+. ...+|..+...|...|++++|+..+++..+... .++ ..
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3444455555555555555554443110 023555666666666777777666666543200 011 23
Q ss_pred HHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 150 TFVGVLSSCAHLGA--------------------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 150 t~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
++..+...+...|+ +++|...+....+. +...
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~ 180 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL----------------------------VTAL 180 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHT
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhc
Confidence 45555556666666 55555555444331 1111
Q ss_pred CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 043362 210 PRK--TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD----GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282 (516)
Q Consensus 210 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 282 (516)
..+ ...++..+...|...|++++|...|++..+... .++ ..++..+...+...|++++|...+++..+...-.
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 110 123455566666666666666666666543210 111 2356666777777788888877777765431111
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---
Q 043362 283 PG----PEHYTCMVDLLGRAGQLNEALELIESML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLE--- 347 (516)
Q Consensus 283 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 347 (516)
++ ..++..+...|...|++++|...+++.. ..++ ..++..+...+...|++++|...++++.++.
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 11 4567777888888888888888887764 1122 5677788888999999999999999988753
Q ss_pred ---CCCccchHHHhhHHHHcCChh
Q 043362 348 ---PMNTGYYVLLSNIYSEARNLD 368 (516)
Q Consensus 348 ---p~~~~~~~~l~~~~~~~g~~~ 368 (516)
+....++..++.+|...|+..
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 341 GDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCcchhHHHHHHHHHHHHhhHhH
Confidence 223456677777887777654
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=9.2e-13 Score=125.72 Aligned_cols=262 Identities=16% Similarity=0.066 Sum_probs=164.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CchHHHHH
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGVCPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFG-SNPFLNNA 188 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~ 188 (516)
.....+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34445555555566655555555432 111 234445555555556666665555554331 111 11344555
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 043362 189 LINMYARCGNLKKARAIFDGMPR-----KT----VVSWTAIIGGYGIHGH--------------------GEVAVQLFDE 239 (516)
Q Consensus 189 li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 239 (516)
+...|...|++++|.+.|++..+ .+ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666666666666666655421 11 2356666666777777 7777777766
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 240 MLKS----GIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 240 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5431 1111 1335667777788888888888888877643211112 23677788888889999999888887
Q ss_pred cC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------ccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 311 ML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN------TGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 311 m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.. ..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 64 1122 5567778888999999999999999988764322 34677899999999999999999998
Q ss_pred HHhC
Q 043362 377 MRER 380 (516)
Q Consensus 377 m~~~ 380 (516)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8754
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.9e-12 Score=125.97 Aligned_cols=226 Identities=10% Similarity=0.076 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC-HHHHHHHHhcCC---CCCHhHHHHHHHH
Q 043362 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN-LKKARAIFDGMP---RKTVVSWTAIIGG 223 (516)
Q Consensus 148 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~m~---~~~~~~~~~li~~ 223 (516)
...|..+..++...|++++|...++++++.. +.+..+|+.+..+|.+.|+ +++|.+.|++.. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467777888899999999999999999975 4568899999999999997 999999999876 3478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHh-cCCH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGR-AGQL 301 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~ 301 (516)
+...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++. .| +...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999863 346788999999999999999999999999965 44 67889999999999 6665
Q ss_pred HHH-----HHHHHhcC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC-------
Q 043362 302 NEA-----LELIESML-VEP-DGAVWGALLGACKIHK--NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR------- 365 (516)
Q Consensus 302 ~~A-----~~~~~~m~-~~p-~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 365 (516)
++| ++.+++.. ..| +...|..+...+...| ++++|...++++ +.+|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 47777665 456 5889999999998888 689999999998 889999999999999999875
Q ss_pred --ChhHHHHHHHHH-Hh
Q 043362 366 --NLDGIMRVRMMM-RE 379 (516)
Q Consensus 366 --~~~~a~~~~~~m-~~ 379 (516)
..++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999998 54
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=1e-11 Score=107.95 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=119.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 292 (516)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45567777777777777777777777776642 234566677777777777777777777777653 223455666667
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
..+...+++++|.+.+.+.. ..| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 77777788888777777655 334 4677777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhC
Q 043362 371 MRVRMMMRER 380 (516)
Q Consensus 371 ~~~~~~m~~~ 380 (516)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888777653
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=2e-12 Score=127.83 Aligned_cols=270 Identities=12% Similarity=0.012 Sum_probs=164.2
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHcccCCC---------CchHH
Q 043362 50 MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDF----SVGNCLMTMYVKCGSVDYGRKLFDQVPEK---------GLITW 116 (516)
Q Consensus 50 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---------~~~~~ 116 (516)
+..+...+...|++++|...++.+++.. +.+. .++..+...|...|++++|...|++..+. ...+|
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3444556667788888888888777764 2233 35667777777777777777777665321 12456
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSL----GVCP-DAVTFVGVLSSCAHLGA-----------------HSVGLEVEQQI 174 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~~~~~~~ 174 (516)
..+...|...|++++|+..|++..+. +-.| ...++..+...+...|+ +++|...+.+.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66777777777777777777665442 1011 12344555555556666 45555444443
Q ss_pred HHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC---
Q 043362 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK--TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD--- 248 (516)
Q Consensus 175 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--- 248 (516)
.+. +.....+ ...+|..+...|...|++++|+..|++..+... .++
T Consensus 210 l~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 210 LKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 321 0000000 123455556666666666666666666544210 011
Q ss_pred -HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C---CCC---
Q 043362 249 -GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP----GPEHYTCMVDLLGRAGQLNEALELIESML-V---EPD--- 316 (516)
Q Consensus 249 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~--- 316 (516)
..++..+...+...|++++|...+++......-.. ....+..+...|...|++++|...+++.. . .++
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 22566677777777788777777777664311111 14567778888888888888888887764 0 112
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 317 -GAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 317 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
..++..+...+...|++++|...++++.++.+
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 45677788889999999999999999988664
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=1.5e-12 Score=131.35 Aligned_cols=208 Identities=9% Similarity=-0.020 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCH-HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL-KKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
+.+.+.+....... +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|.+.|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 33555666666666666776 66666666553 235667888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHA---------GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA--------GQLNE 303 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 303 (516)
.+. .|+...+..+...+... |++++|...+++..+. -+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57777888888888888 9999999999998864 123577888889999888 89999
Q ss_pred HHHHHHhcC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 304 ALELIESML-VEP----DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 304 A~~~~~~m~-~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
|.+.|++.. ..| +...|..+...|...|++++|...++++++++|+++.++..+..++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999876 355 68899999999999999999999999999999999999999999999999999998765433
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=4.6e-12 Score=120.81 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIESML----VEPD----GA 318 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~ 318 (516)
++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++.. ..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4445555555556666665555554432111111 3455666666777777777776666553 0011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
++..+...+...|++++|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566677777888888888888888777654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=7.5e-11 Score=111.76 Aligned_cols=219 Identities=12% Similarity=0.072 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 043362 130 THVLELYREMKSLGVCPDAVTFVGVLSSCA-------HLGAH-------SVGLEVEQQIQANGFGSNPFLNNALINMYAR 195 (516)
Q Consensus 130 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 195 (516)
++|+.+|++..... +-+...|......+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 335556666665554 34775 7888888888873224456688888888888
Q ss_pred CCCHHHHHHHHhcCCC--C-CHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCChHHHHH
Q 043362 196 CGNLKKARAIFDGMPR--K-TVV-SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC-SHAGLTDKGLE 270 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 270 (516)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887653 2 333 78888888888999999999999988753 23444444333332 23699999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV----EP--DGAVWGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 271 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
+|++..+.. +-+...|..++..+.+.|++++|..+|++... .| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988652 23678888899999999999999999988752 34 36788888888889999999999999999
Q ss_pred hcCCCCcc
Q 043362 345 KLEPMNTG 352 (516)
Q Consensus 345 ~~~p~~~~ 352 (516)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 99987653
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=8.9e-12 Score=108.30 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 258 (516)
+..+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 55677777777777788888877777654 2366778888888888888888888888887753 3345666777778
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A 336 (516)
+...++++.+...+...... .+.+...+..+...|.+.|++++|.+.|++.. ..| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88889999999998888764 23357788888999999999999999998876 445 588899999999999999999
Q ss_pred HHHHHHHhhcCCCCc
Q 043362 337 ELAFGKVIKLEPMNT 351 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~ 351 (516)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.9e-12 Score=122.41 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-C
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSL-------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN------G-F 179 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g-~ 179 (516)
.+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46677777777777777777777777652 12223445666777777778888888777777653 1 1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPR----------K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----- 243 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 243 (516)
+....++..+...|...|++++|.+.|++..+ + ...++..+...|...|++++|++.|++....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22355667777777788888877777765431 1 2334556666666666666666666666542
Q ss_pred -CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 244 -GIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 244 -g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
+..|+ ..++..+...+...|++++|..+++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23455555566666666666666666553
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=1.5e-11 Score=120.55 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CC-CCCHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD----GTAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GL-QPGPE 286 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~ 286 (516)
+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+.+..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 444555555555555555555555443100 011 1245555556666666666666666555310 11 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCccchHH
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML------VEPD-GAVWGALLGACKIHKN---VELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
++..+...|.+.|++++|.+.+++.. ..|. ...+..+...+...|+ .++|...+++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 45566666666666666666665543 0111 1223445555666666 55555555554 222333345666
Q ss_pred HhhHHHHcCChhHHHHHHHHHHh
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
++.+|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777766653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=6.1e-11 Score=116.11 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=161.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC----CchHHHH
Q 043362 119 MISGYAQNGLATHVLELYREMKSL----GVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFG----SNPFLNN 187 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~----~~~~~~~ 187 (516)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777777777777776553 1111 2345666677777777777777777776652 111 1134667
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 043362 188 ALINMYARCGNLKKARAIFDGMPR-----KT----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----GI-RPDGTAFV 253 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 253 (516)
.+...|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888887776541 11 246777888899999999999999887762 33 33356788
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGRAGQ---LNEALELIESMLVEPD-GAVWGALLGA 326 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 326 (516)
.+...+...|++++|...+++..+...-..+ ...+..+...|...|+ +++|..++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888999999999999999887753211112 2335667788888898 8999999998864343 4567778889
Q ss_pred HHhcCCHHHHHHHHHHHhhcC
Q 043362 327 CKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~ 347 (516)
|...|++++|...++++.++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=1.9e-10 Score=109.04 Aligned_cols=177 Identities=13% Similarity=0.084 Sum_probs=97.0
Q ss_pred HHHHHHHcccCC---C-CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHhcCChHHHHHHHH
Q 043362 99 DYGRKLFDQVPE---K-GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA-V-TFVGVLSSCAHLGAHSVGLEVEQ 172 (516)
Q Consensus 99 ~~A~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~g~~~~a~~~~~ 172 (516)
++|..+|++..+ | +...|..++..+.+.|++++|.++|++..+. .|+. . .|..+...+.+.|++++|+.+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555554432 1 1235555555555555555555555555542 3322 1 45555555555566666666666
Q ss_pred HHHHcCCCCchHHHHHHHHHHH-hCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 043362 173 QIQANGFGSNPFLNNALINMYA-RCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRP 247 (516)
Q Consensus 173 ~~~~~g~~~~~~~~~~li~~y~-~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 247 (516)
++++.. +.+..+|........ ..|++++|.++|++.. ..+...|..++..+.+.|++++|..+|++..... .+|
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 555543 223333433333322 2466666666666553 2245666666666666677777777777766642 344
Q ss_pred --CHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 248 --DGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 248 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
....|..++......|+.+.|..+++++.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2445666666666677777777777776654
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=1e-09 Score=106.77 Aligned_cols=259 Identities=12% Similarity=-0.026 Sum_probs=143.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----hHHHHHHHH
Q 043362 121 SGYAQNGLATHVLELYREMKSLGVCPDAV----TFVGVLSSCAHLGAHSVGLEVEQQIQANGF-GSN----PFLNNALIN 191 (516)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~ 191 (516)
..+...|++++|...+++.....-..+.. ++..+...+...|++++|...+++..+... ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445555555555555554432111111 233334445555666666655555544210 001 122344555
Q ss_pred HHHhCCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHH
Q 043362 192 MYARCGNLKKARAIFDGMPR----------K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR--P--DGTAFVSVL 256 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 256 (516)
.|...|++++|.+.+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666666666666554321 1 1234455566667777777777777766553211 1 124555666
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHHH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT-----CMVDLLGRAGQLNEALELIESML-VEPD-----GAVWGALLG 325 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~ 325 (516)
..+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 667777777777777777654311111111111 23344667788888888877765 1111 234556667
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC------CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPM------NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+...|++++|...++++.+..+. ....+..++.+|...|+.++|...++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888888888888877654321 112566677788888888888888877654
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=5.1e-11 Score=125.17 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=122.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTC 290 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 290 (516)
+..+|+.+...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...|++..+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456777777777777777777777777764 33 3566777777777788888888887777753 34 4667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChh
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 368 (516)
+..+|.+.|++++|.+.|++.. ..| +...|..+...+...|++++|+..|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 8888888888888888887765 445 47778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 043362 369 GIMRVRMMMRE 379 (516)
Q Consensus 369 ~a~~~~~~m~~ 379 (516)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776653
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=117.10 Aligned_cols=246 Identities=13% Similarity=0.035 Sum_probs=151.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCC--------CC---chHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVPE--------KG---LITWNAMISGYAQNGLATHVLELYREMKSL------GV 144 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 144 (516)
..++..+...|...|++++|..+|+++.+ .+ ..+|..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44566677777777777777777766543 12 256777777888888888888888777653 22
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----
Q 043362 145 CP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN------GF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRK---- 212 (516)
Q Consensus 145 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---- 212 (516)
.| ...++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|.+.|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3456777888888889999999888888764 22 233567888999999999999999998876421
Q ss_pred -------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH
Q 043362 213 -------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285 (516)
Q Consensus 213 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 285 (516)
...++..+...|...|++++|...|+++.+.. |+. .+..+- ....... ...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~----------------~~~ 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW----------------MHA 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------HHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH----------------HHH
Confidence 34578889999999999999999999987631 100 000000 0000000 011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
..+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 112222333344455555555555544 223 3566777777788888888888888887776653
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=2.6e-10 Score=98.39 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
..+..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456667777777888888888877653 255667777777777777777777777776642 334556666666777
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
..|++++|.++++.+.+. .+.+...+..+...|...|++++|.+.++++. ..| +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776653 22345566666666666666666666666554 222 45566666666666666666666
Q ss_pred HHHHHhhcCCCCc
Q 043362 339 AFGKVIKLEPMNT 351 (516)
Q Consensus 339 ~~~~~~~~~p~~~ 351 (516)
.++++.+..|++.
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 6666666665554
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=1.1e-10 Score=100.86 Aligned_cols=163 Identities=14% Similarity=0.009 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 467778888999999999999999987642 346778888999999999999999999999865 23467888999999
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHH
Q 043362 295 LGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 372 (516)
|...|++++|.+.++++. ...+...|..+...+...|++++|...++++.+..|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999876 334688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 043362 373 VRMMMRER 380 (516)
Q Consensus 373 ~~~~m~~~ 380 (516)
.++...+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988754
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.4e-10 Score=113.35 Aligned_cols=220 Identities=12% Similarity=0.032 Sum_probs=121.0
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CC---CchHHHHHHHHHHHhCCCHHHHHHHHhcCC-------CC---CHhHHHHHHH
Q 043362 158 CAHLGAHSVGLEVEQQIQANG--FG---SNPFLNNALINMYARCGNLKKARAIFDGMP-------RK---TVVSWTAIIG 222 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~---~~~~~~~li~ 222 (516)
+...|++++|...+.++.+.. .+ ....++..+...|...|+++.|...+++.. .. ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445555666666555555421 01 113345555556666666655555554432 10 1235556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCCCCHHHHHHHHHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKS----GIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GLQPGPEHYTCMVDL 294 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 294 (516)
.|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...+.+..+.. +.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 666666666666666665441 1111 12345566666777777777777776665411 111124556666777
Q ss_pred HHhcCCHHHHHHHHHhcC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 295 LGRAGQLNEALELIESML------VEPD-GAVWGALLGACKIHKN---VELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~------~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
|.+.|++++|...+++.. ..|. ...+..+...+...++ +.+|...+++.. ..|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHC
Confidence 777777777777776653 1122 2334444455566666 666666665521 1233334566777777777
Q ss_pred CChhHHHHHHHHHH
Q 043362 365 RNLDGIMRVRMMMR 378 (516)
Q Consensus 365 g~~~~a~~~~~~m~ 378 (516)
|++++|...+++..
T Consensus 350 g~~~~A~~~~~~al 363 (378)
T 3q15_A 350 CHFEQAAAFYRKVL 363 (378)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88777777777664
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=3.8e-09 Score=109.76 Aligned_cols=366 Identities=11% Similarity=0.013 Sum_probs=200.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCC---chHHHHHHHHHHHhC-CCCChhHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY---LWLGMCCHCICVKFG-LDLDFSVG 85 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 85 (516)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+.++|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 48889999999999999999999999999876 34555667777777677777 899999999888764 13788888
Q ss_pred HHHHHHHHHcCCH--------HHHHHHHcccC------CCC-chHHHHHHHHHH---------HcCChhHHHHHHHHHHH
Q 043362 86 NCLMTMYVKCGSV--------DYGRKLFDQVP------EKG-LITWNAMISGYA---------QNGLATHVLELYREMKS 141 (516)
Q Consensus 86 ~~ll~~~~~~g~~--------~~A~~~f~~~~------~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 141 (516)
...+....+.++. +...++|+... .++ ...|...+.-.. .+++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665543 33446676522 222 246766665432 23446677777777764
Q ss_pred CCCCCC--HHHHH---HHHHHH----------HhcCChHHHHH-------------------------------------
Q 043362 142 LGVCPD--AVTFV---GVLSSC----------AHLGAHSVGLE------------------------------------- 169 (516)
Q Consensus 142 ~g~~p~--~~t~~---~ll~~~----------~~~g~~~~a~~------------------------------------- 169 (516)
. +.. ..+|. ..-... .....++.|+.
T Consensus 223 i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 223 Q--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp S--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred C--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 2 221 11221 111110 00011122222
Q ss_pred ------------------------------HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH-HHHhcCC---CCCHh
Q 043362 170 ------------------------------VEQQIQANGFGSNPFLNNALINMYARCGNLKKAR-AIFDGMP---RKTVV 215 (516)
Q Consensus 170 ------------------------------~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~---~~~~~ 215 (516)
+|++++.. ++.+..+|-..+..+...|+.++|. ++|++.. ..+..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~ 379 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH
Confidence 23333322 1223334444444444555555554 5555443 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSG---------IRPD------------GTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
.|-..+...-+.|++++|.++|+++.... -.|+ ...|...+....+.|..+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666666655421 0121 12355555555556666666666666
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--
Q 043362 275 MKNKYGLQPGPEHYTCMVDLLGRAG-QLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-- 349 (516)
Q Consensus 275 ~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-- 349 (516)
+.+.. ..+....|...+.+-.+.| +.+.|.++|+... ...+...|...+......|+.+.|..+|++++...|+
T Consensus 460 A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 65420 1112233333333333333 3666666666554 2224555555565555666666666666666665552
Q ss_pred -CccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 350 -NTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 350 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2334555555555666666666666666553
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=1.7e-10 Score=116.26 Aligned_cols=207 Identities=13% Similarity=0.008 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHh
Q 043362 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH-SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207 (516)
Q Consensus 129 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 207 (516)
+++++..+.+.... .+.+...+..+..++...|++ ++|...++++++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444455444332 122445555555556666666 66666666665543 2345556666666666666666666665
Q ss_pred cCC--CCCHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CChHHH
Q 043362 208 GMP--RKTVVSWTAIIGGYGIH---------GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA--------GLTDKG 268 (516)
Q Consensus 208 ~m~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a 268 (516)
+.. .|+...|..+...|... |++++|+..|++..+.. +.+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 543 23445555566666666 66666666666666642 22455566666666666 667777
Q ss_pred HHHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 269 LEYFYGMKNKYGLQP----GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFG 341 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~ 341 (516)
...|++..+. .| +...|..+...|...|++++|.+.|++.. ..| +...|..+...+...|++++|...+.
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777666643 33 55666667777777777777777776654 334 35566666666666666666665443
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1.5e-09 Score=105.86 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=160.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---C-CchHHH
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGV-CPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GF---G-SNPFLN 186 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~---~-~~~~~~ 186 (516)
.....+...|++++|+..|++..+.-. .+| ..++..+..++...|+++.|...+.+..+. .. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677788888888777764310 122 345666777777788888888777776652 11 1 124566
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 043362 187 NALINMYARCGNLKKARAIFDGMPR-----K----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----GIRPDGTAFV 253 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~ 253 (516)
+.+...|...|++++|.+.|++..+ . ...+++.+...|...|++++|+..|++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 7788888888888888887766532 1 2346777888888999999999999887761 2223366788
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGRAGQ---LNEALELIESMLVEPD-GAVWGALLGA 326 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 326 (516)
.+...+.+.|++++|...+++..+...-.++ ...+..+...|...|+ +++|...+++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888999999999999999998865322222 3445666667777888 8899999988653333 4566678888
Q ss_pred HHhcCCHHHHHHHHHHHhhc
Q 043362 327 CKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~ 346 (516)
|...|++++|...++++.+.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=4e-10 Score=101.49 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=155.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHH
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIG 222 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~ 222 (516)
.|...+......+...|++++|...++.+++...+++...+..+..+|.+.|++++|.+.|++.. ..+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888888999999999999999999997654677777779999999999999999998765 235678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---HHHHHHHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKSGIRPDG-------TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMV 292 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 292 (516)
.|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|+++.+ +.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999988853 2234 4577777888899999999999999884 4565 56677777
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 293 DLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
..|...|+. .++++. ...+...+..+. ....+.+++|...+++++++.|+++.+...+..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777665543 233322 123444454443 3345668999999999999999998666655544
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=3.9e-09 Score=102.69 Aligned_cols=224 Identities=8% Similarity=-0.115 Sum_probs=130.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChh----hHHHHHHHhhcCCCchHHHHHHHHHHHhCC-CCC----hhHHHHH
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSV----TMLCLLPICVDPGYLWLGMCCHCICVKFGL-DLD----FSVGNCL 88 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~l 88 (516)
....+...|++++|...+++.....-..+.. ++..+...+...|+++.|.+.++..++... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445667888999999988887753212221 344455566677888888888877665321 111 1234566
Q ss_pred HHHHHHcCCHHHHHHHHcccCC-------C---C-chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C--CHHHHHH
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPE-------K---G-LITWNAMISGYAQNGLATHVLELYREMKSLGVC--P--DAVTFVG 153 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~-------~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 153 (516)
...|...|++++|...+++..+ + . ..++..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6777777888777777765431 1 1 134555666777777777777777776543111 1 1234556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc-hHHHH-----HHHHHHHhCCCHHHHHHHHhcCCCCC-------HhHHHHH
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSN-PFLNN-----ALINMYARCGNLKKARAIFDGMPRKT-------VVSWTAI 220 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~-----~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~l 220 (516)
+...+...|++++|...+++.......++ ...+. .++..+...|++++|...+++....+ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66667777777777777777655311111 11111 23344666777777777776655321 1134455
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 043362 221 IGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~ 241 (516)
...+...|++++|...+++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666554
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=5.8e-10 Score=100.43 Aligned_cols=187 Identities=12% Similarity=-0.049 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCC---C-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMP---R-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVL 256 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 256 (516)
|+..+..+...|.+.|++++|.+.|++.. . ++...|..+..++...|++++|+..|++..+. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 44555666666666666666666666543 1 45555555666666666666666666666653 23 334555666
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQP-GP-------EHYTCMVDLLGRAGQLNEALELIESML-VEPD---GAVWGALL 324 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll 324 (516)
..+...|++++|...+++..+. .| +. ..|..+...+...|++++|.+.|++.. ..|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666666666666666643 22 22 345555566666666666666666654 3343 34444444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..+.. .+...++++..+.+.+...|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 44432 23344455555554443333222 233445568999999888764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=3.7e-10 Score=104.76 Aligned_cols=151 Identities=10% Similarity=-0.010 Sum_probs=83.0
Q ss_pred cCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCchHHHHHHHH
Q 043362 126 NGLATHVLELYREMKS-------LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN------GF-GSNPFLNNALIN 191 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~ 191 (516)
.|++++|+.+|++..+ ...+....++..+...+...|++++|...+.++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555433 111223456667777777778888887777777653 11 223456667777
Q ss_pred HHHhCCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHH
Q 043362 192 MYARCGNLKKARAIFDGMPR----------K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS------GIRPD-GTAFV 253 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~ 253 (516)
.|...|++++|.+.|++..+ + ...+|..+...|...|++++|...|++..+. +..|+ ..++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777777777777665421 1 2334555555555666666666666555442 11111 23444
Q ss_pred HHHHHHhccCChHHHHHHHHHhH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
.+...+...|++++|..+++++.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555555555544
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=1.2e-09 Score=102.45 Aligned_cols=217 Identities=8% Similarity=0.006 Sum_probs=120.8
Q ss_pred CHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 043362 97 SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL----GVCPD-AVTFVGVLSSCAHLGAHSVGLEVE 171 (516)
Q Consensus 97 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 171 (516)
++++|...|++. ...|...|++++|++.|.+..+. |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776553 66788888888888888776542 22222 346667777777777777777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-CC-
Q 043362 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH-GHGEVAVQLFDEMLKSGIR-PD- 248 (516)
Q Consensus 172 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~- 248 (516)
++.++. +...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 766552 1112222221 12344555556664 6666666666665442100 01
Q ss_pred ---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH--
Q 043362 249 ---GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP-----EHYTCMVDLLGRAGQLNEALELIESML-VEPDG-- 317 (516)
Q Consensus 249 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~-- 317 (516)
..++..+...+...|++++|...|++..+...-.+.. ..|..+...+...|++++|...+++.. ..|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2345566666666777777777776666431111111 134556666667777777777776654 23331
Q ss_pred ----HHHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCC
Q 043362 318 ----AVWGALLGACK--IHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 318 ----~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
..+..++.++. ..+++++|+..|+++..++|..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 12333444443 3455677777776666666543
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.11 E-value=8.6e-10 Score=115.86 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSA 258 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 258 (516)
...++.|...|.+.|++++|.+.|++.. ..+..+|+.+..+|.+.|++++|++.|++..+. .| +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4566666666666666666666666553 235566777777777777777777777777764 33 35677777777
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVEL 335 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~ 335 (516)
+...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++.. ..| +...|..+...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888777753 34 46677888888888888888888887765 455 47778888888888888888
Q ss_pred HHHHHHHHhhcC
Q 043362 336 AELAFGKVIKLE 347 (516)
Q Consensus 336 A~~~~~~~~~~~ 347 (516)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888888877644
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.6e-08 Score=94.85 Aligned_cols=231 Identities=12% Similarity=0.089 Sum_probs=143.6
Q ss_pred hHHHHHHHHhHHCCCCCChhhHHHHHHHhhcC-C-CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHc
Q 043362 29 SEAVSLFGKMREQGVEINSVTMLCLLPICVDP-G-YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD 106 (516)
Q Consensus 29 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~ 106 (516)
.+|.+++.+..+. .++....| .++ ... + ++++|...+..+ ...|...|++++|...|+
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 3567777777665 23222223 333 221 2 478888777765 456788999999999988
Q ss_pred ccCCC-----C----chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 107 QVPEK-----G----LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 107 ~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
+..+. + ..+|+.+...|.+.|++++|+..|++..+.. ...|+...+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~~---------- 116 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------THRGQFRRG---------- 116 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHH----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHHHH----------
Confidence 76431 1 3689999999999999999999999876521 111221111
Q ss_pred CCCCchHHHHHHHHHHHhC-CCHHHHHHHHhcCCCC-----C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043362 178 GFGSNPFLNNALINMYARC-GNLKKARAIFDGMPRK-----T----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247 (516)
Q Consensus 178 g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 247 (516)
..+++.+..+|... |++++|.+.|++..+. + ..+|+.+...|.+.|++++|+..|++..+.....
T Consensus 117 -----a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 117 -----ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp -----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred -----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 11233444445553 5555555555443210 1 2356677778888888888888888887743222
Q ss_pred CH------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHhcC
Q 043362 248 DG------TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP------EHYTCMVDLLG--RAGQLNEALELIESML 312 (516)
Q Consensus 248 ~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~ 312 (516)
.. .++..+..++...|++++|...|++..+ +.|+. ..+..++..|. ..+++++|.+.|+++.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 21 1456677778888888888888888763 34432 12344555554 4577999999998875
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=1.1e-08 Score=93.99 Aligned_cols=203 Identities=11% Similarity=0.028 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-C---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPR--K-T---VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD-GTAFVS 254 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ 254 (516)
...+-.+...+.+.|++++|.+.|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 44444555556666666666666665542 1 2 34555555566666666666666666555321 111 233444
Q ss_pred HHHHHhc--------cCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043362 255 VLSACSH--------AGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325 (516)
Q Consensus 255 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 325 (516)
+..++.. .|++++|...|+++.+.+ |+ ......+.......+.+ ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4445555 566666666666655432 21 11111111100000000 111356678
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc---cchHHHhhHHHHc----------CChhHHHHHHHHHHhCCCCCCCceeEEE
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPMNT---GYYVLLSNIYSEA----------RNLDGIMRVRMMMRERRLKKDPGYSYVE 392 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~i~ 392 (516)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++.+.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----------- 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----------- 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----------
Confidence 88999999999999999999998854 4788899999877 89999999999987632
Q ss_pred ECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 043362 393 LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426 (516)
Q Consensus 393 ~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 426 (516)
..+|...++...+..+...+.+
T Consensus 226 ------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2345566666666766666654
No 88
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.05 E-value=4.4e-07 Score=94.29 Aligned_cols=352 Identities=8% Similarity=-0.017 Sum_probs=235.5
Q ss_pred chHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC---HHHHHHH
Q 043362 28 VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS---VDYGRKL 104 (516)
Q Consensus 28 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~ 104 (516)
..+.+..|++.+..+ +-|..+|..++..+...+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666666664 678899999999999999999999999999988 47788899999999999999 9999999
Q ss_pred HcccCC-----CCchHHHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------
Q 043362 105 FDQVPE-----KGLITWNAMISGYAQNGLA--------THVLELYREMKS-LGV-CPD-AVTFVGVLSSCA--------- 159 (516)
Q Consensus 105 f~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~--------- 159 (516)
|++... +++..|...+.-..+.++. +.+.++|+.... .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 998754 5667888877665555543 334477777554 466 564 455655554432
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-------------CCCHHHHHHHHhc------------------
Q 043362 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR-------------CGNLKKARAIFDG------------------ 208 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~------------------ 208 (516)
..+.++.++.+|.+++......-..+|......--. ..+++.|...+..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 234577888888888764322222333211111000 0112223333221
Q ss_pred -------------------------------------------------CC---CCCHhHHHHHHHHHHhcCCHHHHH-H
Q 043362 209 -------------------------------------------------MP---RKTVVSWTAIIGGYGIHGHGEVAV-Q 235 (516)
Q Consensus 209 -------------------------------------------------m~---~~~~~~~~~li~~~~~~g~~~~A~-~ 235 (516)
.. ..+...|-..+.-+.+.|+.++|. +
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 10 012223444444455677778886 8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC--------CCCC------------HHHHHHHHHHH
Q 043362 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG--------LQPG------------PEHYTCMVDLL 295 (516)
Q Consensus 236 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~p~------------~~~~~~li~~~ 295 (516)
+|++.... .+.+...+...+......|+++.|.++|+.+..... -.|+ ..+|...++..
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 88888764 344555566777778888999999999999885310 0131 34688888888
Q ss_pred HhcCCHHHHHHHHHhcCCC-C--CHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 296 GRAGQLNEALELIESMLVE-P--DGAVWGALLGACKI-HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~~~-p--~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
.+.|.++.|..+|.++... | ....|...+..-.. .++.+.|..+|+.+++..|+++..+...+......|+.+.|.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8889999999999887522 2 23334322222223 356899999999999999988888888888888899999999
Q ss_pred HHHHHHHhCCC
Q 043362 372 RVRMMMRERRL 382 (516)
Q Consensus 372 ~~~~~m~~~~~ 382 (516)
.+|+.......
T Consensus 525 ~lferal~~~~ 535 (679)
T 4e6h_A 525 SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHhcC
Confidence 99998876544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=3.4e-08 Score=91.44 Aligned_cols=235 Identities=11% Similarity=0.031 Sum_probs=113.3
Q ss_pred cCCHHHHHHHHcccCCCCc-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 173 (516)
.|++..+..-...+...+. ..-.-+.++|...|++.... .-.|....+..+.. |...+ +...+++
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~~ 91 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELEN 91 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHHH
T ss_pred hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHHH
Confidence 5777776665555433222 22223446666666665311 11233223222222 22221 4445555
Q ss_pred HHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-
Q 043362 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-----KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP- 247 (516)
Q Consensus 174 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 247 (516)
..+.+ +++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 92 l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d 168 (310)
T 3mv2_B 92 LLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED 168 (310)
T ss_dssp TTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 44443 23333444566666666666666666665421 23445555566666666666666666666552 44
Q ss_pred ----CHHHHHHHHHHH--hccC--ChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------
Q 043362 248 ----DGTAFVSVLSAC--SHAG--LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV------ 313 (516)
Q Consensus 248 ----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------ 313 (516)
+..+...+..++ ...| +..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+..
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 234444444442 2222 566666666665532 23322222333355556666666666554321
Q ss_pred -----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 314 -----EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 314 -----~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.| ++.+...++......|+ +|.++++++.+..|+++
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 13 24444344444444444 55566666666666554
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=5.5e-09 Score=96.72 Aligned_cols=220 Identities=15% Similarity=-0.007 Sum_probs=131.1
Q ss_pred HhCCCchHHHHHHHHhHHC-------CCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh------CC-CCChhHHHHH
Q 043362 23 VLNSLVSEAVSLFGKMREQ-------GVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF------GL-DLDFSVGNCL 88 (516)
Q Consensus 23 ~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 88 (516)
...|++++|+..|++..+. ..+....++..+...+...|++++|...+..+++. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766542 21223556777788888889999999888887765 22 2234577888
Q ss_pred HHHHHHcCCHHHHHHHHcccCCC--------C---chHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHH
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEK--------G---LITWNAMISGYAQNGLATHVLELYREMKSL------GVCP-DAVT 150 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t 150 (516)
...|...|++++|...|++..+. + ..+|..+...|...|++++|+..|++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888775421 1 356777788888888888888888877653 1123 2446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-------C-CCCchHHHHHHHHHHHhCC------CHHHHHHHHhcCCCC---C
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQAN-------G-FGSNPFLNNALINMYARCG------NLKKARAIFDGMPRK---T 213 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-------g-~~~~~~~~~~li~~y~~~g------~~~~A~~~~~~m~~~---~ 213 (516)
+..+...+...|++++|...++++.+. . .......+..+...+...+ .+..+...++..... .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 667777777888888888888777653 1 1112223333333333222 233333344433322 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
..++..+...|...|++++|..+|++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455556666666666666666665543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=2.4e-08 Score=92.51 Aligned_cols=180 Identities=12% Similarity=0.059 Sum_probs=93.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 132 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
|+..|++....+ .++..++..+..++...|++++|.+++.+.+..+. ..+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 34444445555666666666666666666655442 2345555666666666666666666666654
Q ss_pred CCC-------HhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 043362 211 RKT-------VVSWTAIIGG--YGIHG--HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279 (516)
Q Consensus 211 ~~~-------~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 279 (516)
+.+ ..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 221 2333334434 22223 566666666666442 3442233333445666666666666666544321
Q ss_pred C-C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 043362 280 G-L-------QPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD 316 (516)
Q Consensus 280 ~-~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 316 (516)
. + +-++.+...+|......|+ +|.+++.++. ..|+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 0 0 2244455444444444554 5556665554 3343
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.7e-08 Score=81.62 Aligned_cols=130 Identities=19% Similarity=0.324 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
+|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 35555666666666666666666665542 224445555555566666666666666665543 122344444555555
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 296 GRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
...|++++|.+.++++. ..| +...|..+...+...|++++|...++++.+..|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 55555555555555443 112 344444555555555555555555555555444
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=9.8e-09 Score=94.43 Aligned_cols=186 Identities=11% Similarity=0.061 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C----CHhH
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN---PFLNNALINMYARCGNLKKARAIFDGMPR--K----TVVS 216 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~~~~ 216 (516)
.+...+......+...|++++|...++.+++.. +.+ ...+..+..+|.+.|++++|...|++..+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677788888999999999999999999864 223 67788899999999999999999998753 2 2456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHH
Q 043362 217 WTAIIGGYGI--------HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288 (516)
Q Consensus 217 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 288 (516)
+..+..++.. .|++++|+..|++..+. .|+.... ..+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999885 3432111 1111111111111 12235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCCcc
Q 043362 289 TCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIH----------KNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
..+...|.+.|++++|...|+++. ..|+ ...+..+..+|... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 567788888999999999888775 2343 45666777777655 8899999999999999998753
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.2e-08 Score=82.60 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=113.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|..++..+.+. .+.+...+..+...+...|++++|...++++. ...+...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788889999999999999999865 23367788889999999999999999999876 3346788889999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..|++++|...++++.+..|.+...+..++.+|...|++++|.+.++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999999889999999999999999999999988754
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=5.8e-08 Score=87.11 Aligned_cols=181 Identities=10% Similarity=-0.002 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMPR--KT----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG--TAFVSV 255 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 255 (516)
..+-.+...+.+.|++++|.+.|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444455566667777777777766542 21 235556666777777777777777776664211111 123333
Q ss_pred HHHHhc------------------cCChHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC
Q 043362 256 LSACSH------------------AGLTDKGLEYFYGMKNKYGLQPGP-EHYTCMVDLLGRAGQLNEALELIESMLVEPD 316 (516)
Q Consensus 256 l~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 316 (516)
..++.. .|+.++|...|+.+.+. .|+. ..+.++..+. .+....
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-----------
Confidence 333332 34445555555555432 1211 1111110000 000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---cchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT---GYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112455668889999999999999999999875 5688999999999999999999999887654
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=2.6e-08 Score=93.04 Aligned_cols=173 Identities=9% Similarity=-0.028 Sum_probs=134.0
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 043362 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281 (516)
Q Consensus 202 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 281 (516)
..+.+......+...+..+...+.+.|++++|...|++..... +-+...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---
Confidence 3334444334455566777788888999999999999988752 335677888888999999999999999988754
Q ss_pred CCCHHHHHHH-HHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ccchHH
Q 043362 282 QPGPEHYTCM-VDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN--TGYYVL 356 (516)
Q Consensus 282 ~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~ 356 (516)
.|+....... ...+.+.++.++|...+++.. ..| +...+..+...+...|++++|...++++++.+|++ ..++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 4554433332 233667777888888887765 445 58889999999999999999999999999999987 778999
Q ss_pred HhhHHHHcCChhHHHHHHHHHH
Q 043362 357 LSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
++.+|...|+.++|...+++..
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999988877653
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=1.2e-09 Score=91.33 Aligned_cols=140 Identities=12% Similarity=0.007 Sum_probs=101.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcC
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAG 299 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 299 (516)
..+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. .| +...|..+...|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3344556677777777765442 232 334556777777888888888888877754 33 5677888888888888
Q ss_pred CHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 300 QLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAEL-AFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 300 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
++++|...|++.. ..| +..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888765 456 47788888888888888876555 4588899999998888888888777664
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=5.3e-09 Score=110.14 Aligned_cols=168 Identities=11% Similarity=-0.069 Sum_probs=115.2
Q ss_pred HhCCCHHHHHHHHhcCC-----------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 194 ARCGNLKKARAIFDGMP-----------RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 194 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
...|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777777776654 2345667777777777777777777777777642 23456666777777777
Q ss_pred CChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 043362 263 GLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELA 339 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 339 (516)
|++++|...|+++.+. .| +...|..+...|.+.|++++ .+.|++.. ..| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777753 33 45666777777777777777 77777664 334 466777777777777777777777
Q ss_pred HHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 340 FGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 340 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
++++++++|++..++..++.+|...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777765554
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=1.6e-07 Score=83.25 Aligned_cols=161 Identities=9% Similarity=-0.046 Sum_probs=107.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHhHHhcCCCCCHHHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG----LTDKGLEYFYGMKNKYGLQPGPEHY 288 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 288 (516)
++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|++..+. -++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 45555556666666666667777776666644 44555556656665 5 677777777777542 255666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhcCC-CCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 289 TCMVDLLGR----AGQLNEALELIESMLV-EPD---GAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 289 ~~li~~~~~----~g~~~~A~~~~~~m~~-~p~---~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
..|..+|.. .+++++|.+.|++... .|+ ...+..|...|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 6777777777777652 232 6677777777766 67888888888888777 445567777
Q ss_pred HhhHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 043362 357 LSNIYSEA-R-----NLDGIMRVRMMMRERRL 382 (516)
Q Consensus 357 l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 382 (516)
|+.+|... | ++++|.+.++...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88887654 3 78888888887766543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=4.9e-08 Score=102.76 Aligned_cols=168 Identities=8% Similarity=-0.090 Sum_probs=133.5
Q ss_pred hcCCCchHHHHHHHHHH--------HhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHc
Q 043362 58 VDPGYLWLGMCCHCICV--------KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQN 126 (516)
Q Consensus 58 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~ 126 (516)
...+++++|.+.++.++ +.. +.+...+..+...|.+.|++++|...|++..+. +...|+.+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67789999999999887 433 556678888899999999999999999887642 457888889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 043362 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 206 (516)
|++++|++.|++..+.. +-+...+..+..++...|++++ .+.++++++.. +.+...+..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988753 2356678888888999999999 99999998875 446778888999999999999999999
Q ss_pred hcCCCC---CHhHHHHHHHHHHhcCC
Q 043362 207 DGMPRK---TVVSWTAIIGGYGIHGH 229 (516)
Q Consensus 207 ~~m~~~---~~~~~~~li~~~~~~g~ 229 (516)
++..+. +...|..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 988753 34567777777766554
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.6e-07 Score=88.66 Aligned_cols=219 Identities=11% Similarity=-0.010 Sum_probs=147.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 043362 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 205 (516)
.|++++|.+++++..+.. +.. + +...++++.|...+.++ ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888998888776531 111 0 11135666666665543 3456677777777777
Q ss_pred HhcCCCC-----C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCChHHHHHH
Q 043362 206 FDGMPRK-----T----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---IRPD--GTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 206 ~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
|.+..+- + ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7654311 1 3467778888888899999998888865421 1121 3567778888888 999999999
Q ss_pred HHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 043362 272 FYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIESML-V---EPD----GAVWGALLGACKIHKNVELAELA 339 (516)
Q Consensus 272 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~g~~~~A~~~ 339 (516)
|++..+.+.-..+ ..++..+...|.+.|++++|...|++.. . .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988754211111 4577888999999999999999998875 1 122 23566666777888999999999
Q ss_pred HHHHhhcCCCCccc-----hHHHhhHHHHcCChhHHHH
Q 043362 340 FGKVIKLEPMNTGY-----YVLLSNIYSEARNLDGIMR 372 (516)
Q Consensus 340 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 372 (516)
+++.+ +.|..... ...++.+| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865433 23444444 4566655544
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=9.7e-08 Score=98.49 Aligned_cols=160 Identities=11% Similarity=0.032 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 196 CGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677788888877653 356778888888888999999999999888753 335677888888899999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcC
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIH---KNVELAELAFGKVIKLE 347 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~ 347 (516)
++..+. -+.+...+..+...|.+.|++++|.+.+++.. ..| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998864 12357788889999999999999999998876 345 578888899999999 99999999999999999
Q ss_pred CCCccchHHHh
Q 043362 348 PMNTGYYVLLS 358 (516)
Q Consensus 348 p~~~~~~~~l~ 358 (516)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98887777665
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=4e-08 Score=84.38 Aligned_cols=75 Identities=15% Similarity=-0.011 Sum_probs=58.3
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 304 ALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN--TGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 304 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
|...+++.. ..| +...+..+...+...|++++|...++++++.+|+. ...+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555443 345 47888888888888999999999999998888764 4478888899999999999888887654
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=5.6e-08 Score=100.28 Aligned_cols=151 Identities=17% Similarity=0.065 Sum_probs=117.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 305 (516)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+. .| +...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988752 335678889999999999999999999999853 44 5788999999999999999999
Q ss_pred HHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc---CChhHHHHHHHHHHhC
Q 043362 306 ELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA---RNLDGIMRVRMMMRER 380 (516)
Q Consensus 306 ~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 380 (516)
+.+++.. ..| +...|..+...+...|++++|...++++.+.+|++...+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999876 345 5889999999999999999999999999999999999999999999999 9999999999887654
Q ss_pred C
Q 043362 381 R 381 (516)
Q Consensus 381 ~ 381 (516)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=3.6e-07 Score=85.29 Aligned_cols=164 Identities=9% Similarity=0.019 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHH-HHH
Q 043362 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWT-AII 221 (516)
Q Consensus 145 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~-~li 221 (516)
+.+...+..+...+...|++++|...++++.+.. +.+...+..|...|.+.|++++|.+.|+++.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3445567777788888999999999999998864 44677888899999999999999999998874 3333222 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
..+.+.++.++|...|++..... +.+...+..+..++...|++++|...|.++.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34666777778888888877752 34566777888888888888888888888876521111256677778888888887
Q ss_pred HHHHHHHHh
Q 043362 302 NEALELIES 310 (516)
Q Consensus 302 ~~A~~~~~~ 310 (516)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 777776654
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=1.9e-07 Score=82.50 Aligned_cols=131 Identities=11% Similarity=0.001 Sum_probs=59.5
Q ss_pred HHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-
Q 043362 189 LINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL- 264 (516)
Q Consensus 189 li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 264 (516)
+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. +.+..++..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 4555555555555555555443 2244555555555555555555555555555532 2234444445444443332
Q ss_pred -hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 043362 265 -TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGAL 323 (516)
Q Consensus 265 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 323 (516)
.+.+...+.... ...|....+..+...+...|++++|...|++.. ..|+......+
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 222333333322 111111222233344445566666666666554 44554444333
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=3.7e-07 Score=80.68 Aligned_cols=129 Identities=14% Similarity=0.042 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
+.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++++++.. +.+..++..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 336777777777777777777776642 2345667777777777777777777777777754 34566666676666554
Q ss_pred CC--HHHHHHHHhcCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 197 GN--LKKARAIFDGMPRKTVV--SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 197 g~--~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
|. .+.+...|+....++.. .|.....++...|++++|...|++..+ ..|+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCH
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCH
Confidence 43 34455566665555433 223334445556666666666666665 34554
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=6.1e-06 Score=83.01 Aligned_cols=348 Identities=9% Similarity=-0.041 Sum_probs=196.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCC-CchHHHHHHHHHHHh-CC-CCChhHHHHHHH
Q 043362 14 CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG-YLWLGMCCHCICVKF-GL-DLDFSVGNCLMT 90 (516)
Q Consensus 14 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~-g~-~~~~~~~~~ll~ 90 (516)
.|...+..|-. |+++.+..+|++.+.. .|+...|..-+.-..+.+ ..+....+|+.++.. |. ..+..+|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 35555555544 7899999999998875 578888877776655544 345667788877765 43 335677887777
Q ss_pred HHH----HcCCHHHHHHHHcccCCC---Cc-hHHHHHHHHHH-------------HcCChhHHHHHHHHHHHCCCCCCHH
Q 043362 91 MYV----KCGSVDYGRKLFDQVPEK---GL-ITWNAMISGYA-------------QNGLATHVLELYREMKSLGVCPDAV 149 (516)
Q Consensus 91 ~~~----~~g~~~~A~~~f~~~~~~---~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~ 149 (516)
.+. ..|+++.+.++|++.... +. ..|......-. ..+.+..|..++..+...--..+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 654 346788899998887442 11 12222211100 0112233343443333210001222
Q ss_pred HHHHHHHHHHhc--CC-----hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC-C-CHhHHHHH
Q 043362 150 TFVGVLSSCAHL--GA-----HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-K-TVVSWTAI 220 (516)
Q Consensus 150 t~~~ll~~~~~~--g~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~-~~~~~~~l 220 (516)
.|...+.--... +- .+.+..+|++++... +.+..+|-..+..+.+.|+.++|.++|++... | +...|.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~-- 250 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL-- 250 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH--
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH--
Confidence 343333322111 11 234667888877753 45577777777878888888888888875432 2 222232
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---------CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKS---------GI-RP--DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~---------g~-~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 288 (516)
.|+...+.++. ++.+.+. +. .+ ....|...+....+.+..+.|..+|.++ ... ..+...|
T Consensus 251 --~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~ 322 (493)
T 2uy1_A 251 --YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVF 322 (493)
T ss_dssp --HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHH
T ss_pred --HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHH
Confidence 22222111111 2222211 00 11 1244556666666677788888888888 321 2244455
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 289 TCMVDLLGRAG-QLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 289 ~~li~~~~~~g-~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
...+..-...| +.+.|..+|+... .-| +...|...+.-....|+.+.|..+|+++. .....|...+..-...|
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 44333333334 5888888888765 113 35556666776677888888888888873 34456666666667778
Q ss_pred ChhHHHHHHHHHHh
Q 043362 366 NLDGIMRVRMMMRE 379 (516)
Q Consensus 366 ~~~~a~~~~~~m~~ 379 (516)
+.+.+.++++++.+
T Consensus 399 ~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 399 SMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888887776653
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=1.9e-08 Score=83.94 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=101.5
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHK 331 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g 331 (516)
|...+...|++++|+..+..... ..| +...+-.+...|.+.|++++|.+.|++.. ..| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677889999999888763 344 34456788999999999999999999886 456 5899999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHH-HHHHHh
Q 043362 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV-RMMMRE 379 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 379 (516)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=9.4e-08 Score=79.58 Aligned_cols=101 Identities=7% Similarity=-0.045 Sum_probs=87.9
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 280 GLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 280 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
.+.| +...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3444 35567778888899999999999999876 455 58899999999999999999999999999999999999999
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.+|...|++++|...+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=6.5e-07 Score=79.37 Aligned_cols=159 Identities=9% Similarity=-0.089 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHG----HGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 257 (516)
+..+..|..+|...+++++|.+.|++..+ .+..++..+...|.. + ++++|+..|++..+.| +...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 34444444444444555555555444332 234444444444444 4 5666666666665543 4455556666
Q ss_pred HHhc----cCChHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CCHHHHHHHHH
Q 043362 258 ACSH----AGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGR----AGQLNEALELIESMLVE-PDGAVWGALLG 325 (516)
Q Consensus 258 a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-p~~~~~~~ll~ 325 (516)
.|.. .+++++|..+|.+..+. .|. +..+..|..+|.. .+++++|...|++.... ++...+..|..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6665 66777777777777632 332 5666777777776 66778888777776422 45556666666
Q ss_pred HHHhc------CCHHHHHHHHHHHhhcCC
Q 043362 326 ACKIH------KNVELAELAFGKVIKLEP 348 (516)
Q Consensus 326 ~~~~~------g~~~~A~~~~~~~~~~~p 348 (516)
.|... .+.++|...+++..+.+.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66532 278888888888777654
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=4.7e-07 Score=80.04 Aligned_cols=125 Identities=7% Similarity=-0.032 Sum_probs=98.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKI 329 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~ 329 (516)
+..+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|.+.+++.. ..| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556667777777777776653 4567777778888888888888888887765 234 57788888888889
Q ss_pred cCCHHHHHHHHHHHhhcCCCCc----------------cchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 330 HKNVELAELAFGKVIKLEPMNT----------------GYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.|++++|+..++++.+..|.+. .++..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998887766 788899999999999999999999987653
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=2.8e-06 Score=79.36 Aligned_cols=160 Identities=11% Similarity=-0.061 Sum_probs=118.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGI-RPDGT----AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTC 290 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 290 (516)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...+..+.....-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888899999999988876321 22221 2334666677788999999999988863222223 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----C-C--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------ccchH
Q 043362 291 MVDLLGRAGQLNEALELIESML-----V-E--PD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN------TGYYV 355 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-----~-~--p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 355 (516)
+...|...|++++|...++++. . . +. ..++..+...|...|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999998888765 1 1 11 3477888899999999999999999998765322 45788
Q ss_pred HHhhHHHHcCC-hhHHHHHHHHHHh
Q 043362 356 LLSNIYSEARN-LDGIMRVRMMMRE 379 (516)
Q Consensus 356 ~l~~~~~~~g~-~~~a~~~~~~m~~ 379 (516)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887753
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=4.8e-07 Score=81.00 Aligned_cols=185 Identities=12% Similarity=0.037 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CH---hHHH
Q 043362 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS--NPFLNNALINMYARCGNLKKARAIFDGMPR--K-TV---VSWT 218 (516)
Q Consensus 147 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~---~~~~ 218 (516)
+...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|.+.|++..+ | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667778899999999999999999864221 245778889999999999999999998752 2 22 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 043362 219 AIIGGYGI------------------HGHGEVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKY 279 (516)
Q Consensus 219 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 279 (516)
.+..++.. .|+.++|+..|+++.+. .|+.. ..... .....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence 55555554 57899999999999884 45432 22111 111111110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 280 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
.......+...|.+.|++++|...|+++. ..|+ ...+..+..++...|+.++|...++++....|++..
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01122356778899999999999999876 3354 256788889999999999999999999988887654
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=9.4e-06 Score=75.72 Aligned_cols=226 Identities=10% Similarity=0.071 Sum_probs=148.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchHHHHHHHHHH----HhC--
Q 043362 126 NGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLG--AHSVGLEVEQQIQANGFGSNPFLNNALINMY----ARC-- 196 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~-- 196 (516)
....++|++++.+++.. .|+ ...|+.--.++...+ +++++...++.++... +.+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33446788888888774 354 445676667777777 8888888888888764 34555555444444 444
Q ss_pred -CCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------
Q 043362 197 -GNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGE--VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL------ 264 (516)
Q Consensus 197 -g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 264 (516)
++++++.++++++. .+|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 67778888777765 346677777777777777777 88888888887642 355566655555555555
Q ss_pred hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHhcC-C----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE-ALELIESML-V----EPDGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~-~----~p~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
++++++.+..+... -+-|...|+.+-..+.+.|+..+ +.++.++.. . ..+...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 67777777777653 12356677777777777776433 444555543 1 2356777777777777777777887
Q ss_pred HHHHHhh-cCCCCccchHHH
Q 043362 339 AFGKVIK-LEPMNTGYYVLL 357 (516)
Q Consensus 339 ~~~~~~~-~~p~~~~~~~~l 357 (516)
+++.+.+ .+|.....|...
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHH
Confidence 7777775 677665555443
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=1e-06 Score=77.84 Aligned_cols=145 Identities=10% Similarity=-0.069 Sum_probs=94.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 043362 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265 (516)
Q Consensus 186 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 265 (516)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34456667777888888888877777777777777777777788888877777776642 33455666677777777777
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP-DGAVWGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 266 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
++|...|+...+...-.+... +...| +...| ....|..+...+...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777664311111000 00000 01122 24667777777888888888888888888
Q ss_pred hcCCCC
Q 043362 345 KLEPMN 350 (516)
Q Consensus 345 ~~~p~~ 350 (516)
+..|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888765
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=4.2e-06 Score=78.11 Aligned_cols=213 Identities=14% Similarity=0.112 Sum_probs=169.6
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC--CHHHHHHHHhcCC---CCCHhHHHHHHHHH----Hhc---CCH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--NLKKARAIFDGMP---RKTVVSWTAIIGGY----GIH---GHG 230 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~----~~~---g~~ 230 (516)
..++|..+.+.++..+ +.+..+|+.--..+...| +++++++.++.+. ..+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3468899999998875 446777888888888888 9999999999876 34667788765555 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD--KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ------LN 302 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~ 302 (516)
++++++++++.+.. +-|...|..-...+.+.|.++ ++++.+.++.+. . .-|-..|+.-...+.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999864 446778877777778888888 999999999975 1 2366677766666777776 89
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhcC---CCCccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 303 EALELIESML-VEP-DGAVWGALLGACKIHKNVE-LAELAFGKVIKLE---PMNTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 303 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
++++.++++. ..| |...|+-+...+...|+.. ....+++++.+++ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999988776 445 7899999888888887744 4556778877766 78888999999999999999999999999
Q ss_pred HHh
Q 043362 377 MRE 379 (516)
Q Consensus 377 m~~ 379 (516)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=2.6e-07 Score=79.17 Aligned_cols=153 Identities=13% Similarity=0.053 Sum_probs=88.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhcc
Q 043362 187 NALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA-CSHA 262 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~ 262 (516)
..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+......+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3445556666666666666666552 24556666666666666666666666665543 2233222111111 1111
Q ss_pred CChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHHHHHHhcCCHHHHH
Q 043362 263 GLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD---GAVWGALLGACKIHKNVELAE 337 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~~g~~~~A~ 337 (516)
+....|...+++..+. .| +...+..+...|...|++++|...|+++. ..|+ ...+..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223356666666643 33 46667777777777777777777777654 3343 456777777777777777777
Q ss_pred HHHHHHh
Q 043362 338 LAFGKVI 344 (516)
Q Consensus 338 ~~~~~~~ 344 (516)
..+++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=4e-07 Score=73.26 Aligned_cols=107 Identities=9% Similarity=0.030 Sum_probs=72.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+......+.+.|++++|.+.|++..+. -+.+...|..+...|.+.|++++|.+.+++.. ..| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455566666677777777777766643 12246666677777777777777777777655 334 4677777777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhh
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 359 (516)
..|++++|+..|+++++++|++..++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 8888888888888888888877766655544
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=3.5e-06 Score=84.79 Aligned_cols=323 Identities=10% Similarity=-0.060 Sum_probs=200.0
Q ss_pred hCC-CchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC-HHHH
Q 043362 24 LNS-LVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS-VDYG 101 (516)
Q Consensus 24 ~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~A 101 (516)
+.| +++.|..+|+.+... -|. ++++.+.++|+..+.. .|+..+|...+..-.+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888887754 343 7899999999999885 5799999999998888774 3455
Q ss_pred HHHHcccCC------CCchHHHHHHHHHH----HcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHh---------
Q 043362 102 RKLFDQVPE------KGLITWNAMISGYA----QNGLATHVLELYREMKSLGVCPDA--VTFVGVLSSCAH--------- 160 (516)
Q Consensus 102 ~~~f~~~~~------~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~--------- 160 (516)
..+|+.... .+...|...+.-+. .+++.+.+..+|++.... ++.. ..|..... +..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~ 144 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHH
Confidence 666665431 23467887776543 356788899999999873 3321 12221111 111
Q ss_pred -----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC--C-----HHHHHHHHhcCCC---CCHhHHHHHHHHHH
Q 043362 161 -----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--N-----LKKARAIFDGMPR---KTVVSWTAIIGGYG 225 (516)
Q Consensus 161 -----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~-----~~~A~~~~~~m~~---~~~~~~~~li~~~~ 225 (516)
.+.+..|+.+++.+...--..+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-+.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1223344555554443100123446666665433221 1 3445667776542 35778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC--------CCC---CHHHHHHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG--------LQP---GPEHYTCMVDL 294 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~p---~~~~~~~li~~ 294 (516)
+.|+.++|..+|++.... |+...+.. +|......++ +++.+.+.+- ..+ ....|...++.
T Consensus 225 ~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 999999999999999987 44332221 2222111111 1333332210 001 13457777787
Q ss_pred HHhcCCHHHHHHHHHhcCCCC--CHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 295 LGRAGQLNEALELIESMLVEP--DGAVWGALLGAC-KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
+.+.|.++.|..+|++.. .| +...|......- ...++.+.|..+|+.+++..|+++..+...+....+.|+.+.|.
T Consensus 296 ~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 778889999999999883 33 344454322221 22347999999999999988888777777788888999999999
Q ss_pred HHHHHH
Q 043362 372 RVRMMM 377 (516)
Q Consensus 372 ~~~~~m 377 (516)
.+++..
T Consensus 375 ~l~er~ 380 (493)
T 2uy1_A 375 ALFKRL 380 (493)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 999986
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=1.1e-07 Score=78.96 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44566777888888999999999888775 345 6888888888899999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 043362 362 SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888653
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=6.6e-07 Score=70.98 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 043362 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGAC 327 (516)
Q Consensus 250 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 327 (516)
..+..+...+...|++++|..++.++.+. .+.+...+..+...+.+.|++++|...++++. ...+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555666666667777777776666643 12345666677777777777777777777665 223577788888888
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
...|++++|...++++.+..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888899999888888888888877777777765543
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=7.7e-07 Score=83.23 Aligned_cols=163 Identities=10% Similarity=-0.079 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCC--CCC--HH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD-G----TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL--QPG--PE 286 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 286 (516)
.+...+..+...|++++|.+.+++..+.....+ . ..+..+...+...|++++|...+.+..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566677888888888888887776432211 1 12334555667788999999988887643111 111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------Cc
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML----VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPM------NT 351 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 351 (516)
.++.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888899999999999998888764 1222 257888889999999999999999998875432 14
Q ss_pred cchHHHhhHHHHcCChhHH-HHHHHHHH
Q 043362 352 GYYVLLSNIYSEARNLDGI-MRVRMMMR 378 (516)
Q Consensus 352 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 378 (516)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5678899999999999999 77677664
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=7.2e-07 Score=75.06 Aligned_cols=126 Identities=8% Similarity=-0.010 Sum_probs=90.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555666667777777777666643 12246666777777777777777777777654 233 5777888888888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhh--HHHHcCChhHHHHHHHHHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSN--IYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 378 (516)
..|++++|...++++.+..|.+...+..+.. .+...|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8899999999999998888888777644444 4778888999888887664
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=3.7e-07 Score=73.47 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=89.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 281 LQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 281 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
+.|+ ...+......|.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4453 4567788899999999999999999876 445 689999999999999999999999999999999999999999
Q ss_pred hhHHHHcCChhHHHHHHHHHHhC
Q 043362 358 SNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 358 ~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=7.8e-07 Score=71.21 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA 326 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 326 (516)
...+..+...+...|++++|...+.+.... .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666777777777777776653 12356667777777777888888887777665 234 47778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCCh
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 367 (516)
+...|++++|...++++.+..|++...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999998888888888888887765
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=7.1e-07 Score=71.88 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA 326 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 326 (516)
...+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++.. ..| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555566666666666666665532 12245556666666666677777776666654 223 46777777788
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
+...|++++|...++++.+..|.+...+..+..++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888877777777777766553
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=1.1e-07 Score=88.46 Aligned_cols=50 Identities=6% Similarity=-0.098 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc-CChhHHHHHHHHHHh
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA-RNLDGIMRVRMMMRE 379 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 379 (516)
.|+.++|...++++.+.+|++......+...+.+. +.+++|.++|..+.+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57788888888888888887776666676666665 678888888887765
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=4.3e-07 Score=85.62 Aligned_cols=197 Identities=9% Similarity=-0.059 Sum_probs=149.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 239 (516)
..|++++|.+++++..+... .. .+...+++++|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35778899999988876421 11 01115889999888764 36678899999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 240 MLKS----GIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 240 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
..+. +-.+. ..+|..+...|...|++++|...|++..+.+.-..+ ..++..+...|.. |++++|...+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 347888889999999999999999988754211111 3567888889988 999999999988
Q ss_pred cC-CC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------cchHHHhhHHHHcCChhHHHHHHHH
Q 043362 311 ML-VE---PD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT------GYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 311 m~-~~---p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.. .. .+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 75 11 11 46788888999999999999999999998765432 2566777888889999999999998
Q ss_pred HH
Q 043362 377 MR 378 (516)
Q Consensus 377 m~ 378 (516)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=3.9e-06 Score=78.39 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=79.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hHHHHHH
Q 043362 120 ISGYAQNGLATHVLELYREMKSLG-VCPDAV----TFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SN----PFLNNAL 189 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 189 (516)
+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...+.++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555544421 111211 1222333444445555555555555542111 11 1245555
Q ss_pred HHHHHhCCCHHHHHHHHhcCC-------CC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMP-------RK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK----SGIRPD-GTAFVS 254 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~-------~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ 254 (516)
...|...|++++|...|+++. .. ...+|..+...|.+.|++++|+..+++..+ .+..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 555666666655555555443 11 123555666666666777777666666543 121222 456666
Q ss_pred HHHHHhccCC-hHHHHHHHHHhHH
Q 043362 255 VLSACSHAGL-TDKGLEYFYGMKN 277 (516)
Q Consensus 255 ll~a~~~~g~-~~~a~~~~~~~~~ 277 (516)
+..++...|+ .++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6677777773 4777777766654
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=7.4e-07 Score=85.17 Aligned_cols=143 Identities=14% Similarity=0.040 Sum_probs=103.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
...|..+...|.+.|++++|+..|++..... |+...+ ..+.+.+.- .. ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-AL--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-HH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-HH--------HHHHHHHHHH
Confidence 4456666666666666666666666666532 221000 001111100 00 1467788888
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH-
Q 043362 294 LLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI- 370 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 370 (516)
.|.+.|++++|...+++.. ..| +...|..+..++...|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988876 345 6888999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 043362 371 MRVRMMMR 378 (516)
Q Consensus 371 ~~~~~~m~ 378 (516)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44566664
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.51 E-value=9.4e-07 Score=72.67 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455666777888899999988888775 345 67888888888999999999999999999999999889999999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 043362 363 EARNLDGIMRVRMMMRER 380 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~~ 380 (516)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.4e-06 Score=76.17 Aligned_cols=151 Identities=16% Similarity=0.082 Sum_probs=79.4
Q ss_pred hCCCHHHHHH---HHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHhccCChH
Q 043362 195 RCGNLKKARA---IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK----SGIRP-DGTAFVSVLSACSHAGLTD 266 (516)
Q Consensus 195 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 266 (516)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 44443333445566666666666666666666666544 11111 1234555556666667777
Q ss_pred HHHHHHHHhHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCH
Q 043362 267 KGLEYFYGMKNKYGLQP-G----PEHYTCMVDLLGRAGQLNEALELIESML----VEPD----GAVWGALLGACKIHKNV 333 (516)
Q Consensus 267 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~g~~ 333 (516)
+|...+.+..+...-.+ + ...+..+...+...|++++|...+++.. ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 76666666554311111 1 2335555666666666666666665543 1111 22344555556666666
Q ss_pred HHHHHHHHHHhh
Q 043362 334 ELAELAFGKVIK 345 (516)
Q Consensus 334 ~~A~~~~~~~~~ 345 (516)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=5.5e-07 Score=77.10 Aligned_cols=118 Identities=9% Similarity=0.066 Sum_probs=71.5
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCCH--HH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA-CKIHKNV--EL 335 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~g~~--~~ 335 (516)
..|++++|...+....+. -+.+...+..+...|...|++++|...|++.. ..| +...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345556666666655543 12245566666666666666666666666554 223 45566666666 5566666 77
Q ss_pred HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|...++++++.+|+++.++..++.+|...|++++|...++...+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777667777777777777777777777766554
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.4e-06 Score=69.87 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455666677777788888888777765 334 57777778888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHh
Q 043362 363 EARNLDGIMRVRMMMRE 379 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~ 379 (516)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 88888888888887765
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=5.6e-06 Score=77.28 Aligned_cols=94 Identities=12% Similarity=0.055 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---Cc--hH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPD-A----VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG---SN--PF 184 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~---~~--~~ 184 (516)
.+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...+.+..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456666777777777777776665421111 0 11222333344455555555555555432111 11 22
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 185 LNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
+++.+...|...|++++|...|++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~k 180 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444445555444444443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=2.3e-06 Score=78.10 Aligned_cols=126 Identities=9% Similarity=-0.116 Sum_probs=67.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHh
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--PEHYTCMVDLLGR 297 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 297 (516)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|...... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 344445555555555555554432 233223333334555566666666666544321 0 110 1245555666666
Q ss_pred cCCHHHHHHHHHhcCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 298 AGQLNEALELIESMLVE---PD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 298 ~g~~~~A~~~~~~m~~~---p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.|++++|+..|++.... |. ...+..+..++...|+.++|...|+++...+|+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666666655311 32 234555566667777777777777777777776
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=1.3e-06 Score=67.76 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CccchHHHhhH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM--NTGYYVLLSNI 360 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 360 (516)
...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4455666777777778888777777664 223 5677777788888888888888888888888888 77788888888
Q ss_pred HHHc-CChhHHHHHHHHHHhCC
Q 043362 361 YSEA-RNLDGIMRVRMMMRERR 381 (516)
Q Consensus 361 ~~~~-g~~~~a~~~~~~m~~~~ 381 (516)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888876543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=7.1e-06 Score=74.90 Aligned_cols=137 Identities=15% Similarity=0.049 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHh
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD--GTAFVSVLSACS 260 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~ 260 (516)
..-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 445567778888999999999988863 332355556667888899999999887554321 111 235677788888
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPG--PEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGAL 323 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 323 (516)
..|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++. ..|+...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999888742 22253 3456667778888999999999998876 45664444433
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=1.4e-06 Score=76.19 Aligned_cols=82 Identities=7% Similarity=-0.059 Sum_probs=36.4
Q ss_pred cCCHHHHHH---HHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChHH
Q 043362 95 CGSVDYGRK---LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS----LGVCP-DAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 95 ~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~ 166 (516)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..+++... .+..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 33332222234555555555555555555555555443 11111 12234444444555555555
Q ss_pred HHHHHHHHHH
Q 043362 167 GLEVEQQIQA 176 (516)
Q Consensus 167 a~~~~~~~~~ 176 (516)
|...+.+..+
T Consensus 85 A~~~~~~al~ 94 (203)
T 3gw4_A 85 ARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=3e-06 Score=68.80 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+...+..+...+...|++++|...|++.. ..| +...|..+...+...|++++|...++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 56667777777778888888887777665 334 4777777888888888888888888888888888888888888888
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 043362 362 SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|...++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888877653
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=1.4e-06 Score=69.42 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
.+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35566777888999999999998876 445 6888888889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 043362 365 RNLDGIMRVRMMMRER 380 (516)
Q Consensus 365 g~~~~a~~~~~~m~~~ 380 (516)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=0.0003 Score=66.32 Aligned_cols=180 Identities=8% Similarity=-0.128 Sum_probs=122.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCC-CchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG-YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV 93 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 93 (516)
|+-+-....+.+..++|+++++.++..+ +-+..+|+.--.++...+ .++++...++.++... +.+..+|+.--..+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333344455566678999999988763 333445666666666666 5888888888888775 667778888777777
Q ss_pred Hc-C-CHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 94 KC-G-SVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLAT--------HVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 94 ~~-g-~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
+. + ++++++++++++.+.+. .+|+--.-...+.|.++ ++++.+.++.+.. +-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 76 6 78888888888877654 56665555555555555 7888888887754 3466677777766666
Q ss_pred cCC-------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 043362 161 LGA-------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198 (516)
Q Consensus 161 ~g~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 198 (516)
.+. ++++.+....++... +.|...|+-+-..+.+.|.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665 567777777777654 4466777666666665554
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=3.2e-06 Score=73.78 Aligned_cols=171 Identities=9% Similarity=-0.053 Sum_probs=103.5
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 043362 189 LINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265 (516)
Q Consensus 189 li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 265 (516)
.+......|++++|.+.++.-.+. ....|..+...+...|++++|+..|++.... .|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH
Confidence 344445556777776666644322 3445666777777888888888888877763 2221100000 00
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 266 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
+.- ...+ ....+..+...|.+.|++++|...+++.. ..| +...|..+..++...|++++|...++++
T Consensus 80 ~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 0000 13566777888888899999988888775 334 5788888999999999999999999999
Q ss_pred hhcCCCCccchHHHhhHHHHcCChhHHH-HHHHHHHhC
Q 043362 344 IKLEPMNTGYYVLLSNIYSEARNLDGIM-RVRMMMRER 380 (516)
Q Consensus 344 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 380 (516)
+++.|++..++..+..++...++.+++. ..++.|...
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998888877776 555555443
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=5.8e-06 Score=64.65 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=62.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++.. ..| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555555566666555555542 12244555556666666666666666665544 223 4566666666777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhh
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 359 (516)
..|++++|...++++.+..|+++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7777777777777777777766655544443
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=2.7e-06 Score=72.67 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=97.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCCH--
Q 043362 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL-LGRAGQL-- 301 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 301 (516)
...|++++|+..+++..... +.+...+..+...+...|++++|...|.++.+.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 3466788888888899999999999999888642 2356777788888 7788998
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 302 NEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
++|...+++.. ..| +...|..+...+...|++++|...++++++..|++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 99999998876 345 57888888899999999999999999999999987543
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=1.6e-06 Score=71.93 Aligned_cols=103 Identities=9% Similarity=-0.065 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA 326 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 326 (516)
...+..+...+...|++++|...|..+... -+.+...|..+..+|...|++++|...|++.. ..| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345566677778888888888888887754 12367777888888888899999888888775 345 57788888899
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
+...|++++|...|++++++.|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999887644
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=7.2e-06 Score=67.26 Aligned_cols=109 Identities=14% Similarity=0.025 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGA 322 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ 322 (516)
...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++.. ..| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34444555555555555555555555552 2343 4555666666667777777777666554 233 4667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
+...+...|++++|...++++++..|++...+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77777788888888888888888888776555544444
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=2.5e-06 Score=71.94 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
.+..+...+.+.|++++|.+.|++.. ..| +...|..+...+...|++++|+..++++++++|++...|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444444444455555554444443 222 3444444555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHH
Q 043362 365 RNLDGIMRVRMMMR 378 (516)
Q Consensus 365 g~~~~a~~~~~~m~ 378 (516)
|++++|.+.+++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555555444
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.37 E-value=4.1e-06 Score=66.26 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...+..+...+...|++++|.+.++++. ..| +..+|..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888999999999999999999876 334 68889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 043362 363 EARNLDGIMRVRMMMRER 380 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~~ 380 (516)
..|++++|...++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 151
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=3.3e-06 Score=84.72 Aligned_cols=117 Identities=9% Similarity=0.017 Sum_probs=94.2
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNV 333 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~ 333 (516)
..+...|++++|.+.+++..+. .| +...|..+...|.+.|++++|.+.+++.. ..| +...|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456678888888888888764 33 47788888888999999999999888876 445 588899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccchHHHhhH--HHHcCChhHHHHHHHH
Q 043362 334 ELAELAFGKVIKLEPMNTGYYVLLSNI--YSEARNLDGIMRVRMM 376 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 376 (516)
++|+..+++++++.|++...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999998888888888 8889999999999874
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.36 E-value=1.5e-05 Score=66.81 Aligned_cols=128 Identities=13% Similarity=-0.016 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
..|..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+.+..+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456667777778888888888888877652 335667777778888888888888888888764 13356777888888
Q ss_pred HHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHH--HHHHhcCCHHHHHHHHHHHhh
Q 043362 295 LGRAGQLNEALELIESML-VEP-DGAVWGALL--GACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~ 345 (516)
|...|++++|...+++.. ..| +...+..+. ..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888765 334 455553333 336677888888888877654
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=4.4e-06 Score=65.34 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
....+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35567788889999999999999999876 334 6888999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 043362 362 SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988764
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=5.3e-06 Score=76.96 Aligned_cols=191 Identities=9% Similarity=-0.027 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHH
Q 043362 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGG 223 (516)
Q Consensus 147 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 223 (516)
+...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455556666667777777777777776653 33566777777777788888888877776553 356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
|...|++++|+..|++..+.. |+. ..+...+..... ..++.... ..... ....+......+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 888888888888888876632 211 011111111111 11111111 12221 3444555544443332 68899
Q ss_pred HHHHHHHhcC-CCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHhhcC
Q 043362 303 EALELIESML-VEPDGA-VWGALLGACKIH-KNVELAELAFGKVIKLE 347 (516)
Q Consensus 303 ~A~~~~~~m~-~~p~~~-~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~ 347 (516)
+|.+.++... ..|+.. ....+...+... +.+++|..+|+++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9998887765 456543 333443444444 66888999999887643
No 155
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.32 E-value=3.9e-06 Score=69.64 Aligned_cols=97 Identities=12% Similarity=-0.033 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGAC 327 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~ 327 (516)
.+..+...+.+.|++++|...|+++... .| ++..|..+..+|...|++++|.+.|++.. ..| +...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4445555555666666666666666543 23 45566666666666677777766666654 334 366677777777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCC
Q 043362 328 KIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
...|++++|+..|++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777777754
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=6.3e-06 Score=65.89 Aligned_cols=108 Identities=9% Similarity=-0.054 Sum_probs=71.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|...|.+..+. -+.+...|..+...|.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4445555666666666666666666643 12245666777777777777777777777665 334 4677777778888
Q ss_pred hcCCHHHHHHHHHHHhhcC------CCCccchHHHhhH
Q 043362 329 IHKNVELAELAFGKVIKLE------PMNTGYYVLLSNI 360 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 360 (516)
..|++++|...++++++++ |++......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888877 6665555444443
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.32 E-value=6.7e-06 Score=65.98 Aligned_cols=117 Identities=3% Similarity=-0.110 Sum_probs=86.2
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 88 (516)
..++..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...+++++|...++.+++.. +.+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3466778888899999999999999999988763 3466777778888888889999988888888875 4566677777
Q ss_pred HHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcC
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNG 127 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g 127 (516)
...|.+.|++++|.+.|++..+. +...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777788888877777765432 2345555555555443
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00034 Score=66.00 Aligned_cols=230 Identities=12% Similarity=0.042 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLG-AHSVGLEVEQQIQANGFGSNPFLNNALINM 192 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 192 (516)
+++.+-....+.+..++|++++.++... .|+ ...|+.--.++...+ .++++...++.++... +.+..+|+.-...
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444444555667888888888875 344 445676666667777 5888888888888765 4567777766666
Q ss_pred HHhC-C-CHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043362 193 YARC-G-NLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGE--------VAVQLFDEMLKSGIRPDGTAFVSVLSAC 259 (516)
Q Consensus 193 y~~~-g-~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 259 (516)
+.+. + +++++.++++++.+. |..+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6665 6 778888888887643 5667776655555555555 7888888888764 33666777666666
Q ss_pred hccCC-------hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhcC
Q 043362 260 SHAGL-------TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL--------------------NEALELIESML 312 (516)
Q Consensus 260 ~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~ 312 (516)
.+.+. ++++.+.+.++... -+-|...|+.+-..+.+.|+. .+..++...+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 66665 57777777777653 123566666666666655542 23333333332
Q ss_pred -C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCC
Q 043362 313 -V-------EPDGAVWGALLGACKIHKNVELAELAFGKVI-KLEPMN 350 (516)
Q Consensus 313 -~-------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~p~~ 350 (516)
. .+....+..|+..|...|+.++|.++++.+. +.+|-.
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 1 1345555556666666666666666666654 444543
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=8.1e-06 Score=68.73 Aligned_cols=107 Identities=18% Similarity=0.063 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA 326 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 326 (516)
...+..+...+...|++++|...|.+..+.. +.+...|..+...|.+.|++++|...+++.. ..| +...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456666677777778888887777777541 2256777888888888888888888888775 345 58888999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
+...|++++|...++++++++|++...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999988755443
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=5.1e-06 Score=68.18 Aligned_cols=104 Identities=12% Similarity=-0.035 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|...|..+... -+.+...|..+...|.+.|++++|...|++.. ..| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556667777777777777777653 12256667777777888888888888887765 334 4677778888888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
..|++++|...+++++++.|+++.....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 8899999999999998888877654433
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.28 E-value=4.7e-06 Score=66.97 Aligned_cols=95 Identities=6% Similarity=-0.011 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc-------chH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG-------YYV 355 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~ 355 (516)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..+++++++.|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3456678888889999999999998876 445 5888889999999999999999999999998876643 566
Q ss_pred HHhhHHHHcCChhHHHHHHHHHHh
Q 043362 356 LLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 778888899999999999988754
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=8.3e-06 Score=66.87 Aligned_cols=97 Identities=13% Similarity=0.020 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
+...+..+...+...|++++|.+.|++.. ..|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 56788888999999999999999999876 5576 678888889999999999999999999999999999999999
Q ss_pred hHHHHcCChhHHHHHHHHHHhC
Q 043362 359 NIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988754
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=9.1e-06 Score=64.78 Aligned_cols=97 Identities=11% Similarity=0.045 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999876 334 6888999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 043362 362 SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00037 Score=65.43 Aligned_cols=192 Identities=13% Similarity=0.042 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC--CHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC-HHHHHHHH
Q 043362 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--NLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGH-GEVAVQLF 237 (516)
Q Consensus 164 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 237 (516)
++++..+++.++... +.+..+|+.-...+.+.| .++++.++++++. .+|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666666653 445666666555666666 3677777777665 3466677766666666676 47777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc--------------CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-----
Q 043362 238 DEMLKSGIRPDGTAFVSVLSACSHA--------------GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA----- 298 (516)
Q Consensus 238 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 298 (516)
.++.+.. +-|...|+.....+.+. +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 7777653 23455555444333332 3456667776666643 122455555544444444
Q ss_pred ------CCHHHHHHHHHhcC-CCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 299 ------GQLNEALELIESML-VEPDGAVWGALLG-----ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 299 ------g~~~~A~~~~~~m~-~~p~~~~~~~ll~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
+.++++++.++++. ..||. .|..+.. +....+..++....+.++.+++|.....|..+..-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 34667777776665 45653 2332211 11235666777778888888887766555555443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=1.2e-05 Score=65.08 Aligned_cols=100 Identities=9% Similarity=-0.117 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHH
Q 043362 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLG 325 (516)
Q Consensus 248 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~ 325 (516)
+...+..+...+...|++++|...|...... .+.+...+..+...|...|++++|...+++.. ..| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666777777777777777776653 12245667777777777777777777777665 334 4777778888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888887776
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=1.9e-05 Score=78.83 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...|..+..+|.+.|++++|...+++.. ..| +...|..+..+|...|++++|+..|+++++++|++..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678888899999999999999998876 344 68889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHH-HHHHHHh
Q 043362 363 EARNLDGIMR-VRMMMRE 379 (516)
Q Consensus 363 ~~g~~~~a~~-~~~~m~~ 379 (516)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988774 4555543
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=1.5e-05 Score=66.84 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 467777888888888899999999888888888888888888889999999999888888765
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=1.2e-05 Score=80.73 Aligned_cols=114 Identities=13% Similarity=-0.020 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 304 (516)
.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+++..+. -+.+...+..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555544431 122444444455555555555555555554432 111344444555555555555555
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043362 305 LELIESML-VEP-DGAVWGALLGA--CKIHKNVELAELAFG 341 (516)
Q Consensus 305 ~~~~~~m~-~~p-~~~~~~~ll~~--~~~~g~~~~A~~~~~ 341 (516)
.+.+++.. ..| +...+..+..+ +...|++++|+..++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55554443 122 12223333322 444455555555555
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=1.5e-05 Score=61.50 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC---CHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP---DGAVWGALLGA 326 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~ 326 (516)
.+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++.. ..| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4444555556666666666666666543 12245556666666777777777777766654 223 46677777777
Q ss_pred HHhc-CCHHHHHHHHHHHhhcCCCCc
Q 043362 327 CKIH-KNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 327 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+... |++++|.+.++++.+..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7778 888888888888887777653
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=3.4e-05 Score=73.50 Aligned_cols=113 Identities=9% Similarity=-0.045 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-C---------------HhHHHHHHHH
Q 043362 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--K-T---------------VVSWTAIIGG 223 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~---------------~~~~~~li~~ 223 (516)
+++++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+ | + ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444433321 22467888999999999999999999987642 2 2 2455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|+++.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555432 2234444444445555555555555554444
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=1e-05 Score=66.73 Aligned_cols=62 Identities=10% Similarity=-0.086 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCCccch----HHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKL-------EPMNTGYY----VLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888888 88888888 8888999999999999988888765
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=1.1e-05 Score=64.29 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------ccchH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN-------TGYYV 355 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 355 (516)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|...++++.+..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456677777888888888888888765 233 57778888888888999999999999998887765 67788
Q ss_pred HHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 356 LLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8999999999999999999988763
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.1e-05 Score=77.60 Aligned_cols=162 Identities=8% Similarity=-0.081 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCCC-CHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDG----TAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GLQP-GPEH 287 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~ 287 (516)
+..+...|...|++++|.+.+.++... +..++. .+.+.+-..+...|+.+++..++....... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555555555555555555554331 001111 112222223344566666666665554321 1112 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCC----cc
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLE---PMN----TG 352 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~ 352 (516)
+..|...|...|++++|..++++.. .+|. ..++..++..|...|++++|...++++.... ++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 5666777777777777777666543 1121 4556666677777777777777777766543 211 12
Q ss_pred chHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 353 YYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 353 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666666777777776665553
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=9.5e-06 Score=64.92 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHHHhhHHH
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEPD-G---AVWGALLGACKIHKNVELAELAFGKVIKLEPMN---TGYYVLLSNIYS 362 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p~-~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 362 (516)
+...+...|++++|...|++.. ..|+ . ..+..+...+...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444555555666555555543 1222 1 345555555666666666666666666666655 444566666666
Q ss_pred HcCChhHHHHHHHHHHh
Q 043362 363 EARNLDGIMRVRMMMRE 379 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~ 379 (516)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.12 E-value=7.4e-06 Score=71.47 Aligned_cols=147 Identities=11% Similarity=0.031 Sum_probs=82.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCH----------------
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTV---------------- 214 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~---------------- 214 (516)
........|.++.+.+.+....... ......+..+...|.+.|++++|.+.|++... .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444556677777777665433321 12345677888999999999999999987642 222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVD 293 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 293 (516)
..|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+. .| +...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 556666666667777777777777666642 234555566666666666666666666666543 22 3444555555
Q ss_pred HHHhcCCHHHHH
Q 043362 294 LLGRAGQLNEAL 305 (516)
Q Consensus 294 ~~~~~g~~~~A~ 305 (516)
.+...++.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 555544444443
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=4.2e-05 Score=60.86 Aligned_cols=105 Identities=12% Similarity=0.035 Sum_probs=53.4
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C----CCC----HHHHHHH
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V----EPD----GAVWGAL 323 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~----~p~----~~~~~~l 323 (516)
..+...+...|++++|...+...... .+.+...+..+...|...|++++|...+++.. . .++ ..+|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33344444444444444444444432 11233444445555555555555555554443 1 111 4556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
...+...|++++|...++++.+..| ++.....+..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 6667777777777777777777666 34444444333
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.00061 Score=63.90 Aligned_cols=179 Identities=11% Similarity=0.087 Sum_probs=131.1
Q ss_pred HHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-hHHHHHHH
Q 043362 199 LKKARAIFDGMP---RKTVVSWTAIIGGYGIHGH--GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL-TDKGLEYF 272 (516)
Q Consensus 199 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 272 (516)
++++.++++.+. .++..+|+.-...+...|+ +++++.++.++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 466777776654 4578899988888888884 899999999999864 4467777777777777887 58999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc------
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDLLGRA--------------GQLNEALELIESML-VEP-DGAVWGALLGACKIH------ 330 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~------ 330 (516)
..+.+. . +-|...|+.....+.+. +.++++++.+++.. ..| |...|+-+-..+...
T Consensus 169 ~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH-C-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999975 2 33666777666666554 45888999988876 445 688887666555544
Q ss_pred -----CCHHHHHHHHHHHhhcCCCCccchHHHhhHH---HHcCChhHHHHHHHHHHhC
Q 043362 331 -----KNVELAELAFGKVIKLEPMNTGYYVLLSNIY---SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 331 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 380 (516)
+.++++++.+++++++.|++.-.+..++... ...|..++....+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4588999999999999999854444333322 2356777888888888753
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=0.0002 Score=70.47 Aligned_cols=57 Identities=7% Similarity=0.032 Sum_probs=33.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 120 ISGYAQNGLATHVLELYREMKSLGVCPDA----------------VTFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+.+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44567788888888888887765321110 1244555556666666666666555544
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=6e-05 Score=60.34 Aligned_cols=59 Identities=7% Similarity=-0.084 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+.+..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555555555555555555554431 1233444445555555555555555555444
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=5.9e-05 Score=60.12 Aligned_cols=99 Identities=12% Similarity=-0.006 Sum_probs=59.7
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHH
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACK 328 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~ 328 (516)
+...+...|++++|...|..+.+...-.+. ...+..+...|.+.|++++|...+++.. ..|+ ...+..+...+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334455556666666666665543111110 1355556666666777777776666654 2232 455666777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
..|++++|...++++++..|+++..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHH
Confidence 7888888888888888877776533
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=1.5e-05 Score=76.04 Aligned_cols=147 Identities=13% Similarity=-0.056 Sum_probs=80.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666777777888888888888887763 344331 22333333333222 1 136778888
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH-HHcCChhHH
Q 043362 294 LLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY-SEARNLDGI 370 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 370 (516)
.|.+.|++++|...+++.. ..| +...|..+..+|...|++++|+..|+++++++|++..++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988875 345 5888889999999999999999999999999999888888887774 445667777
Q ss_pred HHHHHHHHhC
Q 043362 371 MRVRMMMRER 380 (516)
Q Consensus 371 ~~~~~~m~~~ 380 (516)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7888777643
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=3.9e-05 Score=63.57 Aligned_cols=92 Identities=18% Similarity=0.082 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCccc
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEP------MNTGY 353 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~ 353 (516)
+..+...|...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++.++..+ .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 3344444444455554444444432 0011 33445555566666666666666666654321 11335
Q ss_pred hHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 354 YVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 354 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+..++.+|...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66677777777777777777776543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.05 E-value=4.2e-06 Score=66.06 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
..|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...+++..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555555555555555544443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=2.7e-05 Score=64.55 Aligned_cols=132 Identities=14% Similarity=0.039 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR-PD----GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PE 286 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 286 (516)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554431100 11 124455555666666666666666665432111111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
.+..+...+...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++..++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566667777777777777766553 0111 3456667777888888888888888877643
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=5.1e-05 Score=75.73 Aligned_cols=124 Identities=13% Similarity=-0.005 Sum_probs=98.8
Q ss_pred HHhccCChHHHHHHHHHhHHhcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HHHHH
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYG--LQP----GPEHYTCMVDLLGRAGQLNEALELIESML---------VEPD-GAVWG 321 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~ 321 (516)
.+...|++++|..++++..+... +.| ...+++.|..+|...|++++|..++++.. ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999999888775432 122 24578899999999999999999888764 3354 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCccc---hHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 322 ALLGACKIHKNVELAELAFGKVIK-----LEPMNTGY---YVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.|...|...|++++|+.+++++++ ++|+++.+ ...+..++...+++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 56777654 4567788889999999999999998743
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=4.5e-05 Score=73.62 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVD 293 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 293 (516)
..|..+...+.+.|++++|+..|++..+. .|+.. .....+++. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 34666666777777777777777766542 00000 000011100 0112 4567888899
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 294 LLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
.|.+.|++++|.+.+++.. ..| +...|..+..+|...|++++|+..+++++++.|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 445 58889999999999999999999999999999999989999999998888877765
Q ss_pred HH
Q 043362 372 RV 373 (516)
Q Consensus 372 ~~ 373 (516)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=1.7e-05 Score=65.37 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-C-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-V-------EPD-GAVW----GALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~-------~p~-~~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 66666677777777777776666554 4 776 6788 899999999999999999999999999988766
Q ss_pred hHHHh
Q 043362 354 YVLLS 358 (516)
Q Consensus 354 ~~~l~ 358 (516)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 55443
No 188
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.98 E-value=3.3e-05 Score=61.28 Aligned_cols=96 Identities=8% Similarity=-0.125 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+...
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~ 94 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 94 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445556666667777777777777766652 3345555556666666666666666666666654 3445555666666
Q ss_pred HHHcCCHHHHHHHHcccC
Q 043362 92 YVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~ 109 (516)
|.+.|++++|...|++..
T Consensus 95 ~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 666666666666665543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=1.7e-05 Score=62.50 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=61.2
Q ss_pred cCChHHHHHHHHHhHHhcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 043362 262 AGLTDKGLEYFYGMKNKYGL-QP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAE 337 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~ 337 (516)
.|++++|...|++..+. +. .| +...+..+...|...|++++|.+.|++.. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666777666632 10 12 34566777777778888888888777765 334 4777777888888888888888
Q ss_pred HHHHHHhhcCCCCccc
Q 043362 338 LAFGKVIKLEPMNTGY 353 (516)
Q Consensus 338 ~~~~~~~~~~p~~~~~ 353 (516)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877643
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=4.1e-05 Score=64.17 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc-cchHHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT-GYYVLL 357 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l 357 (516)
+...|..+..+|.+.|++++|...+++.. ..| +...|..+..++...|++++|...++++++++|+++ .....+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34677888888999999999999988876 445 588899999999999999999999999999999876 333333
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=4e-05 Score=73.11 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577888899999999999999987642211111 1223344444433221 13677788889999
Q ss_pred CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHH-HHhcCCHHHHHHH
Q 043362 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGA-CKIHKNVELAELA 339 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~-~~~~g~~~~A~~~ 339 (516)
|++++|...+.+..+. -+.+...|..+..+|...|++++|...|++.. ..|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998864 12367788899999999999999999999886 4564 4555555544 3445677888889
Q ss_pred HHHHhhcCCCCc
Q 043362 340 FGKVIKLEPMNT 351 (516)
Q Consensus 340 ~~~~~~~~p~~~ 351 (516)
++++.+..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999998888664
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=3.3e-05 Score=59.72 Aligned_cols=92 Identities=10% Similarity=-0.036 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------ccchH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN------TGYYV 355 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 355 (516)
+...+..+...+.+.|++++|.+.+++.. ..| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667778888888999999999888775 344 68888889999999999999999999999999988 66677
Q ss_pred HHhhHHHHcCChhHHHHHHH
Q 043362 356 LLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~~~ 375 (516)
.++.++...|+.++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777766655443
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=9.2e-05 Score=54.73 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++.+.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566777788888888888888888765 334 57788888888999999999999999999999988888888888776
Q ss_pred HcC
Q 043362 363 EAR 365 (516)
Q Consensus 363 ~~g 365 (516)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00071 Score=69.07 Aligned_cols=167 Identities=8% Similarity=-0.017 Sum_probs=123.2
Q ss_pred HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--C
Q 043362 200 KKARAIFDGMP---RKTVVSWTAIIGGYGIHGH----------GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG--L 264 (516)
Q Consensus 200 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 264 (516)
++|.+.++.+. ..+..+|+.--.++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 45555555544 2244566665555555555 788888888888753 335667777777777888 6
Q ss_pred hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc-----------
Q 043362 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG-QLNEALELIESML-VEP-DGAVWGALLGACKIH----------- 330 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~----------- 330 (516)
++++.+.++++.+.. +-+...|+.-...+.+.| .++++.+.++++. ..| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 688999998888651 235667777777777888 8899999988887 445 678888777666552
Q ss_pred ---CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhH
Q 043362 331 ---KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369 (516)
Q Consensus 331 ---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 369 (516)
+.++++.+.+.+++..+|++..+|..+..++.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999998888555
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.74 E-value=0.00016 Score=71.97 Aligned_cols=96 Identities=9% Similarity=-0.098 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEPD----------------GAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
...+..+...|.+.|++++|...|++.. ..|+ ...|..+..+|.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3455666677777777777777777654 2232 5788899999999999999999999999999
Q ss_pred CCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 348 PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 348 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|++..+|..++.+|...|++++|...+++..+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999865
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=0.00013 Score=55.48 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 316 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+...|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5778888889999999999999999999999999999999999999999999999999988764
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00021 Score=71.26 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-C
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMPR----------K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-----SGI-R 246 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~ 246 (516)
.+++.|..+|...|++++|..++++..+ | ...+++.|...|...|++++|+.++++..+ .|. .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555555555554444321 1 123455566666666666666666655442 121 1
Q ss_pred CCH-HHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 247 PDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 247 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|+. .+...+-.++...+.+++|+.++.++++.
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23344455666677777777777777653
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00024 Score=55.37 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=56.0
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 304 ALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 304 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
|.+.|++.. ..| +...|..+...+...|++++|+..++++++.+|++..++..++.+|...|++++|...++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444433 234 4677777777788888888888888888888888777888888888888888888888877754
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.56 E-value=0.00051 Score=66.21 Aligned_cols=118 Identities=8% Similarity=-0.014 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCC----------------C---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPE----------------K---GLITWNAMISGYAQNGLATHVLELYREMKSLGV 144 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~----------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 144 (516)
.+..+...|.+.|++++|.+.|++..+ . +..+|+.+..+|.+.|++++|++.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 456677777788888888877776543 1 13456666666777777777777777666542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 145 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
+.+...+..+..++...|++++|...++++.+.. +.+...+..+..++.+.++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2245566666666666677777776666666653 234555555555555555555543
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=7.1e-05 Score=61.59 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 297 RAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN----------VELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
+.+++++|.+.++... ..| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4455666666666654 344 46666666666665554 56999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHhCC
Q 043362 365 R-----------NLDGIMRVRMMMRERR 381 (516)
Q Consensus 365 g-----------~~~~a~~~~~~m~~~~ 381 (516)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998643
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=8.2e-05 Score=57.41 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=68.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC------hhH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD------FSV 84 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~ 84 (516)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 45667778888888888888888888887763 4456677777777888888888888888877654 222 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
+..+...+...|+.+.|...|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 5556666666666666666665554
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.39 E-value=0.0017 Score=52.53 Aligned_cols=111 Identities=14% Similarity=-0.001 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AGQLNE 303 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 303 (516)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35677777777777765 33333 555566666677777777776653 245566666666665 566666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcC
Q 043362 304 ALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLE 347 (516)
Q Consensus 304 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~ 347 (516)
|.+.|++.....+...+..|...|.. .+|.++|...+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666655433445555555555555 556666666666555543
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.36 E-value=0.00088 Score=49.97 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 315 PDGAVWGALLGACKIHKN---VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
++...+..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...++.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467777777777654444 69999999999999999999999999999999999999999999987644
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.00077 Score=66.15 Aligned_cols=116 Identities=9% Similarity=0.079 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---cc
Q 043362 292 VDLLGRAGQLNEALELIESML------VEPD----GAVWGALLGACKIHKNVELAELAFGKVIK-----LEPMNT---GY 353 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~------~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~ 353 (516)
+..+.+.|++++|..++++.. ..|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788888888887653 2222 56788888999999999999999998876 345544 45
Q ss_pred hHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 043362 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ 425 (516)
Q Consensus 354 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 425 (516)
+..|+.+|...|++++|..++++..+.-.. .. ...||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------TH-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hc-CCCChHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999887652110 01 2469999999888888777765
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.00067 Score=52.75 Aligned_cols=80 Identities=14% Similarity=0.046 Sum_probs=49.5
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 268 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
+...|+...+. -+.+...+..+...|...|++++|...+++.. ..| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555431 12245566666666667777777777666654 233 466667777777777777777777777776
Q ss_pred cCCC
Q 043362 346 LEPM 349 (516)
Q Consensus 346 ~~p~ 349 (516)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.29 E-value=0.00023 Score=58.58 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCCc
Q 043362 301 LNEALELIESML-VEP-DGAVWGALLGACKIH-----------KNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 301 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+++|+..|++.. ..| +..+|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 346666666654 445 366677777776655 589999999999999999875
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.27 E-value=0.0075 Score=48.65 Aligned_cols=112 Identities=9% Similarity=-0.030 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 043362 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAEL 338 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~ 338 (516)
+++++|..+|.+..+. + .|+.. |..+|...+.+++|.+.|++.....+...+..|...|.. .+|.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678888888888764 4 33332 777777778888899888887644677888888888877 788999999
Q ss_pred HHHHHhhcCCCCccchHHHhhHHHH----cCChhHHHHHHHHHHhCCC
Q 043362 339 AFGKVIKLEPMNTGYYVLLSNIYSE----ARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 382 (516)
.+++..+. .++.++..|+.+|.. .++.++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988876 356678888888888 7889999999988887765
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.24 E-value=0.0016 Score=47.78 Aligned_cols=83 Identities=13% Similarity=-0.008 Sum_probs=59.2
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
+...|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45677777788888888888888888887653 3355667777777778888888888888877765 445566666666
Q ss_pred HHHHc
Q 043362 91 MYVKC 95 (516)
Q Consensus 91 ~~~~~ 95 (516)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.013 Score=55.29 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=75.5
Q ss_pred CCHhHHHHHHHHHH--hcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----cC-ChHHH---HHHHHHhHH
Q 043362 212 KTVVSWTAIIGGYG--IHGH---GEVAVQLFDEMLKSGIRPD-GTAFVSVLSACSH----AG-LTDKG---LEYFYGMKN 277 (516)
Q Consensus 212 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----~g-~~~~a---~~~~~~~~~ 277 (516)
.+..+|...+.+.. ..+. ..+|..+|++..+. .|+ ...+..+..++.. .+ ..... ...+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 36777777776643 2333 47889999998884 565 3444443333321 00 00111 111111110
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 278 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
....+.++..|..+...+...|++++|...++++. ..|+...|..+...+...|++++|...++++..++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 00123355666666555555677777777776665 446666665566666667777777777777777776543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0023 Score=62.63 Aligned_cols=92 Identities=14% Similarity=0.028 Sum_probs=66.4
Q ss_pred ccCChHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HHHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYG--LQPG----PEHYTCMVDLLGRAGQLNEALELIESML---------VEPD-GAVWGALL 324 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll 324 (516)
+.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45778888888877665321 2222 4567888888888888888888887764 2344 56788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhh-----cCCCCcc
Q 043362 325 GACKIHKNVELAELAFGKVIK-----LEPMNTG 352 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~ 352 (516)
..|...|++++|+.+++++++ ++|+++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888999999888888876 4576653
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.10 E-value=0.012 Score=59.87 Aligned_cols=171 Identities=9% Similarity=-0.010 Sum_probs=115.4
Q ss_pred CCchHHHHHHHHhHHCCCCCC-hhhHHHHHHHhhcCCC----------chHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 043362 26 SLVSEAVSLFGKMREQGVEIN-SVTMLCLLPICVDPGY----------LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 94 (516)
...++|++.++.+... .|+ ...|+.--.++...++ ++++...++.+++.. +.+..+|+.-...+.+
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3456778888888876 344 3445554444444444 778888888888776 6677788887777888
Q ss_pred cC--CHHHHHHHHcccCCCC---chHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 043362 95 CG--SVDYGRKLFDQVPEKG---LITWNAMISGYAQNG-LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL------- 161 (516)
Q Consensus 95 ~g--~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------- 161 (516)
.| +++++.+.++++.+.| ..+|+--.....+.| .++++++.+.++.+.. +-|...|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 88 6688888888876544 467777777777777 7788888888877653 33566676666665553
Q ss_pred -------CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHH
Q 043362 162 -------GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201 (516)
Q Consensus 162 -------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 201 (516)
+.++++.+.+..++... +.|...|+-+-..+.+.+..++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 44577777777777654 4466677777666666665433
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.07 E-value=0.0038 Score=61.20 Aligned_cols=101 Identities=12% Similarity=-0.058 Sum_probs=76.1
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HH
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYG--LQPG----PEHYTCMVDLLGRAGQLNEALELIESML---------VEPD-GA 318 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~-~~ 318 (516)
.+..+...|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34456677888999888888775321 2222 4568888889999999999998888764 3344 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCccchH
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIK-----LEPMNTGYYV 355 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 355 (516)
+++.|...|...|++++|+.+++++++ ++|+++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 788899999999999999999999876 5687764433
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.0012 Score=64.64 Aligned_cols=83 Identities=17% Similarity=0.062 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHHhcC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---cchHHHh
Q 043362 297 RAGQLNEALELIESML---------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIK-----LEPMNT---GYYVLLS 358 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~ 358 (516)
..|++++|..++++.. ..|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ .++..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578889888887653 2243 57889999999999999999999999986 345554 4588899
Q ss_pred hHHHHcCChhHHHHHHHHHHh
Q 043362 359 NIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.027 Score=60.14 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=46.0
Q ss_pred HHcCCHHHHHH-HHcccC-CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 93 VKCGSVDYGRK-LFDQVP-EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 93 ~~~g~~~~A~~-~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
...+++++|.+ ++..++ .. ....++..+.+.|.+++|+++.+. |+ .-.......|+++.|.++
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGKD---SLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCHH---HHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCchH---HHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHH
Confidence 34566777666 554443 21 125555556666666666654321 10 001223344555555554
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
.+.+ .+...|..|..++.+.|+++.|.+.|.+
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3221 2344555555555555555555555443
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.01 E-value=0.0035 Score=47.28 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=36.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555556666666666666666666665542 22344555566666666666666666665553
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.94 E-value=0.005 Score=46.02 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=49.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccch
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEP-DGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 354 (516)
....+.+.|++++|...+++.. ..| +.. .|..+...+...|++++|+..++++++++|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3456677888888888887765 345 466 788888888888889999999998888888877655
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.077 Score=56.57 Aligned_cols=153 Identities=12% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHHhCCCchHHHH-HHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 043362 21 GYVLNSLVSEAVS-LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD 99 (516)
Q Consensus 21 ~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 99 (516)
.....+++++|.+ ++..+ |+......++..+...|..+.|.++.+ +. ..-......+|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHH
Confidence 3445778888876 44221 112223566666777788777776542 21 12244566789999
Q ss_pred HHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043362 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179 (516)
Q Consensus 100 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 179 (516)
+|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.....|.
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 9999987774 347899999999999999999999988743 33444555556777666665555555441
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
++.-..+|.+.|++++|.++|.+
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 23344456666777777665543
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.63 E-value=0.0044 Score=46.34 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCcc-chHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNTG-YYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
....+...|++++|+..++++++..|+++. .+..++.+|...|++++|.+.++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445677899999999999999999999998 99999999999999999999999987643
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.53 E-value=0.013 Score=47.49 Aligned_cols=65 Identities=5% Similarity=-0.038 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 315 PDGAVWGALLGACKIHK---NVELAELAFGKVIKLE-P-MNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
++..+.-.+..++.+.+ +.++++.+++++.+.+ | ++...++.|+-+|.+.|++++|.++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45666666666666665 5557777777777766 5 3456677777777777777777777777754
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.46 E-value=0.16 Score=39.80 Aligned_cols=140 Identities=11% Similarity=0.033 Sum_probs=93.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 304 (516)
.-.|..++..++..+.... .+..-++-++.-....-+=+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3456677777777776653 23344454554444444445555555555432222 245666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 305 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
...+-.+. .+....+.-+......|.-+.-.++...++...|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66655553 355556666777888899999999988877667777888999999999999999999999999998874
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.23 E-value=0.076 Score=50.06 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=28.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+.+..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444443444455555555555444432 444444444444444455555555444444
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.23 E-value=0.03 Score=41.44 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 282 QPGPEHYTCMVDLLGRAGQ---LNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 282 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
+.++..+..+..++...++ .++|..++++.. ..| ++..+..+...+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3467777777777765544 688888888776 455 47777777888889999999999999999988873
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.09 E-value=0.019 Score=51.90 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCC-ccchHHHhhHHHHc-CChhH
Q 043362 301 LNEALELIESML-VEPD---GAVWGALLGACKI-----HKNVELAELAFGKVIKLEPMN-TGYYVLLSNIYSEA-RNLDG 369 (516)
Q Consensus 301 ~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 369 (516)
..+|...+++.. ..|+ ...|..|...|.. .|+.++|.+.|++++++.|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 445666666554 5565 5678888888877 489999999999999999964 88888999988884 88999
Q ss_pred HHHHHHHHHhCCCCCCC
Q 043362 370 IMRVRMMMRERRLKKDP 386 (516)
Q Consensus 370 a~~~~~~m~~~~~~~~~ 386 (516)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999988876554333
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.38 Score=39.96 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=79.0
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 169 (516)
+....+|+++.|.++.+.+ .+...|..|.....++|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455678888888887766 3456788888888888888888888877642 3444445556677666665
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
+-+.....| -++.-...+.-.|+++++.++|.+..+.... +.....+|..+.|.++.+++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 555555544 1333444455568888887777655432111 11112355566666666554
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.95 E-value=0.059 Score=43.68 Aligned_cols=69 Identities=17% Similarity=0.041 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHhcC-CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 283 PGPEHYTCMVDLLGRAG---QLNEALELIESML-VE-P--DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 283 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~-p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
++..+.-.+.-++++.+ +++++..+++... .. | ....+-.|.-+|.+.|++++|.+.++.+++.+|++.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45555555566666655 4446666665544 22 3 244555667778999999999999999999999886
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.81 E-value=0.013 Score=56.72 Aligned_cols=210 Identities=10% Similarity=0.053 Sum_probs=119.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
....|..|..+..+.+++.+|++.|-+ .-|...|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 345677777777777777777766532 234455667777777777777777766655544 334444567777
Q ss_pred HHHHcCCHHHHHHH----------------------------HcccC------------------------CCCchHHHH
Q 043362 91 MYVKCGSVDYGRKL----------------------------FDQVP------------------------EKGLITWNA 118 (516)
Q Consensus 91 ~~~~~g~~~~A~~~----------------------------f~~~~------------------------~~~~~~~~~ 118 (516)
+|+|.+++.+-.++ |..+. ..++.||-.
T Consensus 125 ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 125 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp HHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 77777765543332 22221 112345555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 198 (516)
.-.+|...+++.-|.-.--.+.- .||. ...++..|...|.+++-+.+++..... -.....+++-|.-.|+|- +
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-C
Confidence 55556555555554333222221 1111 122333445555566555555554422 124566778888888875 3
Q ss_pred HHHHHHHHhcCC----CC-------CHhHHHHHHHHHHhcCCHHHHHH
Q 043362 199 LKKARAIFDGMP----RK-------TVVSWTAIIGGYGIHGHGEVAVQ 235 (516)
Q Consensus 199 ~~~A~~~~~~m~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 235 (516)
.++..+.++..- -| ....|.-++-.|.+..+++.|..
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 444444444322 12 44578889988988888887653
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.77 E-value=0.049 Score=41.22 Aligned_cols=71 Identities=15% Similarity=0.032 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML---------VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
.-+-.|...+.+.|+++.|...++... ..+...++..|..++.+.|+++.|...++++.++.|++..+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334445555555555555555554432 01346777888888899999999999999999999988655333
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.49 E-value=2.6 Score=43.01 Aligned_cols=314 Identities=7% Similarity=-0.049 Sum_probs=158.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG-LDLDFSVGNCLMTMYV 93 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~ 93 (516)
|.....+ .+.|++..+..+...+....+.| -..|..+...+.. .... ++-..+.+.. .+.....-+.-+..+.
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l~~-~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDLMN-QPAV---TVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTGGG-CCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCccc-CCHH---HHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 3333433 45678887777766664332211 1234444333221 1222 4444444432 2222345566677788
Q ss_pred HcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH--HHHHH
Q 043362 94 KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV--GLEVE 171 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~~~ 171 (516)
+.+++.....++.. +..+...-.....+....|+..+|......+-..| .........++..+.+.|.+.. ..+-+
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~ 161 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERI 161 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 89999999998877 43445445556677888899888887777765554 2233445556666665554322 22222
Q ss_pred HHHHHcC-----------CCCch-HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh---HHHHHHHHHHhcCCHHHHHHH
Q 043362 172 QQIQANG-----------FGSNP-FLNNALINMYARCGNLKKARAIFDGMPRKTVV---SWTAIIGGYGIHGHGEVAVQL 236 (516)
Q Consensus 172 ~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~ 236 (516)
..+...| ++++. .....++..+.+-..+ ....... .++.. ....-+.-+++ .+.+.|..+
T Consensus 162 ~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~ 236 (618)
T 1qsa_A 162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLM 236 (618)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHH
Confidence 2222221 11111 1122233222222222 1121111 11111 11112222333 367888888
Q ss_pred HHHHHHcCCCCCHHHH----HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 237 FDEMLKSGIRPDGTAF----VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 237 ~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
|....... ..+.... ..+.......+...++...+...... .++.....-.+..-.+.|+++.|...|+.|+
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 237 IPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHcc
Confidence 88876543 2233222 22333334445355666666655432 2333334444444556788999999898887
Q ss_pred CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 313 VEP-D-GAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 313 ~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
..+ + ..-.-=+..+....|+.++|..+|+++.+
T Consensus 313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 322 2 22112244566778888888888888875
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.28 Score=40.78 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=70.9
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043362 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 270 (516)
+...++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345567777777766655 3556777777777777777777777766432 2233334444566555444
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 271 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
+-+....+ | -++.-...+.-.|+++++.+++.+...-|... -....+|-.+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43333322 1 12333444555677777777776654212111 1123356667777776654
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.97 E-value=0.18 Score=45.68 Aligned_cols=113 Identities=9% Similarity=0.009 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHcccCCCCc--hHHHHHHHH-HHHc--CC------hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 043362 95 CGSVDYGRKLFDQVPEKGL--ITWNAMISG-YAQN--GL------ATHVLELYREMKSLGVCPD---AVTFVGVLSSCAH 160 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~ 160 (516)
.|+..+-.+.+.+....++ ..|..++.+ +... |+ ...|..++++..+. .|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 4454555556666655454 356655543 3332 32 34555555555552 444 3455666666665
Q ss_pred c-----CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC-CCHHHHHHHHhcC
Q 043362 161 L-----GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC-GNLKKARAIFDGM 209 (516)
Q Consensus 161 ~-----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m 209 (516)
. |+.++|++.|++.++.+..-+..++....+.++.. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 66666666666666654322345555555555553 5555555555544
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.63 E-value=6.1e-06 Score=79.15 Aligned_cols=198 Identities=9% Similarity=0.054 Sum_probs=110.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
.+.+|..|..++.+.|.+.+|.+-|-+ ..|...|...|.+..+.|.+++-+..+.-.++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 345677777777777777777665533 3455566777777778888887777666555442223 333467777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC------------------------CCHhH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR------------------------KTVVS 216 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------~~~~~ 216 (516)
.+++.+-.+++ -.||..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77765543333 124554555667777777777777777766542 14445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ-PGPEHYTCMVDLL 295 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~ 295 (516)
|-.+-.+|...+.+.-|.-.--.+. +.|| .+..++..|...|.+++-+.+++.-. |++ .....++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 5555555555555544433222222 1111 11234444555555555555555443 222 2344555555555
Q ss_pred Hh
Q 043362 296 GR 297 (516)
Q Consensus 296 ~~ 297 (516)
++
T Consensus 274 sK 275 (624)
T 3lvg_A 274 SK 275 (624)
T ss_dssp HS
T ss_pred Hh
Confidence 54
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.60 E-value=0.26 Score=38.39 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=13.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
-++.+.|+++.|.+.++.+++.+|+|.
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 344445555555555555555555443
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.80 E-value=0.25 Score=37.15 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYG-----LQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD 316 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 316 (516)
+..+...+.+.|+++.|..+|+...+... -.+....+..|..+|.+.|++++|..++++.. ..|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34455555555555555555555544321 11234556666666666666666666666654 4443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.2 Score=52.18 Aligned_cols=54 Identities=11% Similarity=-0.074 Sum_probs=49.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.-+...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999998873
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.42 E-value=1.2 Score=34.61 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH---HHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCCHH
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK---GLEYFYGMKNKYGLQP--GPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 302 (516)
.....+.+-|.+....|. |+..+-..+..++.+...... ++.++..+.+. + .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455555655555443 666666667777777766555 77777777643 1 13 2233344566777888888
Q ss_pred HHHHHHHhcC-CCCC
Q 043362 303 EALELIESML-VEPD 316 (516)
Q Consensus 303 ~A~~~~~~m~-~~p~ 316 (516)
+|.+.++.+. .+|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 8888877765 4563
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.76 E-value=0.82 Score=36.63 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=58.6
Q ss_pred CCCCCCcccHHHHHHHHHhCCCc------hHHHHHHHHhHHCCCCCChhh----HHHHHHH---hhcCCCchHHHHHHHH
Q 043362 6 IKSTHLTVCYNALISGYVLNSLV------SEAVSLFGKMREQGVEINSVT----MLCLLPI---CVDPGYLWLGMCCHCI 72 (516)
Q Consensus 6 m~~~~~~~~~n~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~t----~~~ll~~---~~~~~~~~~a~~~~~~ 72 (516)
|. ..|..+|-..+...-++|++ ++..++|++.... ++|+... |..+.-- +...++.+.|+++|+.
T Consensus 8 ~~-p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MM-ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred eC-CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44 56888999999888888999 8888888888764 5665311 2111111 1122566677777766
Q ss_pred HHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 043362 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ 107 (516)
Q Consensus 73 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~ 107 (516)
+++.. +.=..+|......-.+.|++..|.+++.+
T Consensus 86 a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 86 ARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 66552 11144555555555555555555555544
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.14 E-value=4.7 Score=31.91 Aligned_cols=47 Identities=11% Similarity=-0.069 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhcCCC-CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 333 VELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..+++.+++.+....|. .......|+-+|.+.|++++|.++.+.+.+
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555566666555552 333445566666666666666666666654
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.04 E-value=4.7 Score=31.67 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=79.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 043362 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 205 (516)
.|..++..++..+.... .+..-++-++--....-+-+-..++++.+-+. .| ...||++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 45555556665555442 23333444443333333333334444333221 11 1245555555555
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 043362 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281 (516)
Q Consensus 206 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 281 (516)
|-.+.. +....+..+..+...|+-++-.+++.++.. +.+|++..+..+..||.+.|+..++.+++.++-++ |+
T Consensus 84 ~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 84 GVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 544432 333445567777888888888888888544 25777888888888888888888888888888765 54
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.00 E-value=8.6 Score=41.00 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=71.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH--HHHhCCCHHHHHHHHhcCCC-CCH-hHHH---HHHHHHHhcCCH
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN--MYARCGNLKKARAIFDGMPR-KTV-VSWT---AIIGGYGIHGHG 230 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~m~~-~~~-~~~~---~li~~~~~~g~~ 230 (516)
+...|+-+....++..+.+.. +..+...+.- ++.-.|+.+.+..+.+.+.. .|. +-|. ++..+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 345566666666666555432 2222222222 23345665555555544431 222 2222 233455666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL-NEALELIE 309 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 309 (516)
....+++..+... ...+......+.-+....|+.+.+.+++..+.+. -.|.+..-.++.-+....|.. .+|.+++.
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 5555577666653 1122222222222333455555555555544431 233333333333333334332 45666666
Q ss_pred hcCCCCCHHHH
Q 043362 310 SMLVEPDGAVW 320 (516)
Q Consensus 310 ~m~~~p~~~~~ 320 (516)
.+...+|..+-
T Consensus 654 ~L~~D~d~~Vr 664 (963)
T 4ady_A 654 PLTKDPVDFVR 664 (963)
T ss_dssp HHHTCSSHHHH
T ss_pred HHccCCCHHHH
Confidence 66544554443
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.89 E-value=0.48 Score=37.95 Aligned_cols=51 Identities=10% Similarity=-0.102 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
+|+++|.++|+.++.+...-+..|...+..-.+.|+.+.|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 566666666666665533334445555555566777777777777666543
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.06 E-value=14 Score=34.13 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=100.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF----DEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
.++..=|.+.+++++|.+++.. -...+.++|+...|-++- +-..+.++++|..+...|+..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3445558888999999887542 234456677776665554 4455678888888877777777655
Q ss_pred CChH-HHHHHHHHhHH---hcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 263 GLTD-KGLEYFYGMKN---KYG--LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 263 g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A 336 (516)
..-+ .=..+.+.+.+ +.| ..-|+.....+...|.+.+++.+|...|-.- ..+.+..+..++.-+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg-~~~s~~~~a~mL~ew~~~~~---- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG-TKESPEVLARMEYEWYKQDE---- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS-CTTHHHHHHHHHHHHHHTSC----
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc-CCchHHHHHHHHHHHHHhcC----
Confidence 4311 11222222221 113 2336777888999999999999999888432 23334666555554444332
Q ss_pred HHHHHHHhhcCCCCccch-HHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 337 ELAFGKVIKLEPMNTGYY-VLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
|.....| ...+--|.-.++...|..+++...+
T Consensus 183 -----------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222 2334446777889999887776654
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.63 E-value=0.86 Score=43.70 Aligned_cols=67 Identities=9% Similarity=0.017 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh-----CCCCCCCc
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE-----RRLKKDPG 387 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 387 (516)
..++.++...|+.+++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33455566677777777777777777777777777777777777777777777776643 36665543
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.30 E-value=3.5 Score=33.63 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 043362 290 CMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 290 ~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
-+...|.+.|+.++|+.+++.++
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 35555666666666666666665
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.89 E-value=6.4 Score=28.82 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
..++|..+-+.+...+- ...+--.=+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46677777777766653 33333333445677899999999999999999999988755 467888888888878777
Q ss_pred cCCCCCHHHHH
Q 043362 243 SGIRPDGTAFV 253 (516)
Q Consensus 243 ~g~~p~~~t~~ 253 (516)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.40 E-value=6.9 Score=28.68 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
..++|..+-+.+...+- ...+--.=+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46677777777766653 33333333445677899999999999999999999988765 366777788777777766
Q ss_pred cCCCCCHHHH
Q 043362 243 SGIRPDGTAF 252 (516)
Q Consensus 243 ~g~~p~~~t~ 252 (516)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444444
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.37 E-value=3.2 Score=30.53 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4556777777887888899999999999999999999999999999987543 334567776653
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.77 E-value=3.5 Score=32.18 Aligned_cols=45 Identities=9% Similarity=-0.085 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhcCCC-CccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 334 ELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.+++.+++.+.+.+|. ....+..|+-++.+.|++++|.++.+.+.
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555444442 23344455555555555555555555544
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.42 E-value=12 Score=41.53 Aligned_cols=164 Identities=9% Similarity=-0.006 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 165 (516)
..++..+.+.+..+.|.++....+. +...-..+..+|...|++++|.+.|.+.- .|+..+..... ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~----------~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------SHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------hhc
Confidence 3455666677777777776655544 33333456677888888888888887642 12221111000 000
Q ss_pred HHHHHHHHHHHc-C-CCCchHHHHHHHHHHHhCCCHHHHHHHHh----cCCCCCH----hHHHHHHHHHHhcCCHHHHHH
Q 043362 166 VGLEVEQQIQAN-G-FGSNPFLNNALINMYARCGNLKKARAIFD----GMPRKTV----VSWTAIIGGYGIHGHGEVAVQ 235 (516)
Q Consensus 166 ~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~----~m~~~~~----~~~~~li~~~~~~g~~~~A~~ 235 (516)
. +..+... . ...-..-|.-++..+.+.|.++.+.++-. .....+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0011110 0 11122345556666666666665554432 2222221 258888899999999999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 043362 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267 (516)
Q Consensus 236 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 267 (516)
.+-.+.....+ ...+..|+...+..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88887765433 4456667776676666543
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.30 E-value=20 Score=32.82 Aligned_cols=169 Identities=11% Similarity=0.025 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL----YREMKSLGVCPDAVTFVGVLSSCA 159 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 159 (516)
.+.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+.++++|.....-++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777788899999998876442 2334556665555443 444555677888777777776665
Q ss_pred hcCChH-HHHHHHHHHH----HcC--CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc---CC
Q 043362 160 HLGAHS-VGLEVEQQIQ----ANG--FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH---GH 229 (516)
Q Consensus 160 ~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 229 (516)
....-+ .=.++.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432111 1123333333 332 2236778888999999999999999888633322455555555444443 43
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
..++- ...-.+++ -|...|+...|..++....+.
T Consensus 184 ~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 33321 11111222 244567888888888776543
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.25 E-value=21 Score=32.99 Aligned_cols=168 Identities=11% Similarity=0.050 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY----REMKSLGVCPDAVTFVGVLSSCA 159 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 159 (516)
.+.++..-|.+.+++++|.+++..- ...+.+.|+..-|-++- +...+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777789999999999875432 23345556655444433 44445667777777666666665
Q ss_pred hcCChH-HHHHHHHHHH----HcC--CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043362 160 HLGAHS-VGLEVEQQIQ----ANG--FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232 (516)
Q Consensus 160 ~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 232 (516)
....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|+..|---.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 444311 1122333332 323 234577788899999999999999998853222223555555544444332111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 233 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
++.+.-.+++ -|...+++..|..++....+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34456788888877766554
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.00 E-value=32 Score=38.09 Aligned_cols=142 Identities=12% Similarity=0.024 Sum_probs=84.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---------------------
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK--------------------- 212 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------------------- 212 (516)
++..+...+..+.+.++... .+.+....-.+..+|..+|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555666555554332 2234333345667788889999999998776311
Q ss_pred -----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 043362 213 -----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG----TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283 (516)
Q Consensus 213 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 283 (516)
-..-|..++..|.+.|.++.+.++-+...+...+-+. ..|..+..++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 0012556677777788888877777665553211111 14566777888888888887777666532 22
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~ 303 (516)
-......||..++..|++++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 34455666666666655443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.00 E-value=7.7 Score=36.98 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCCHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN----KYGLQPGPEHY 288 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 288 (516)
...++..+...|++++|+..++.+... -+.+...+..++.++...|+..+|.+.|+...+ ..|+.|++.+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566677778888888777777664 245677788888888888888888887777543 34777876653
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.92 E-value=26 Score=36.51 Aligned_cols=52 Identities=17% Similarity=0.036 Sum_probs=36.4
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
-|...|+++.|+.+-++... ..| +-.+|..|...|...|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556777777777777764 244 45677777777777777777777777775
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.62 E-value=24 Score=34.18 Aligned_cols=187 Identities=8% Similarity=0.005 Sum_probs=120.4
Q ss_pred cCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCchHH--HHHHHHHHHhCC
Q 043362 126 NGLATHVLELYREMKS-----LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPFL--NNALINMYARCG 197 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~~--~~~li~~y~~~g 197 (516)
.|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+ +|..+...+ .+.+++......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3788999988876654 23444566788899999999999998887776655 333222211 122333333333
Q ss_pred C--HHHHHHHHhcCCC---C-------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHh
Q 043362 198 N--LKKARAIFDGMPR---K-------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--GIRPD---GTAFVSVLSACS 260 (516)
Q Consensus 198 ~--~~~A~~~~~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~ 260 (516)
. .+.-..+.+.... . .......|...|...|++.+|.+++.++... |..+. ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2233334443321 1 1123456778899999999999999998753 22222 235666778899
Q ss_pred ccCChHHHHHHHHHhHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 261 HAGLTDKGLEYFYGMKNKY-GLQPG----PEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
..+++..|..++.++.... ...++ ...|.+++..+...+++.+|...|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999875321 12222 2456788888888999999888776653
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.25 E-value=10 Score=27.76 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043362 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140 (516)
Q Consensus 61 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 140 (516)
..-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||++.|-+|-. .+.|...++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667666666666552 33333334455678999999999999999999999987754 57788888888887887
Q ss_pred HCCCCCCHHHHHH
Q 043362 141 SLGVCPDAVTFVG 153 (516)
Q Consensus 141 ~~g~~p~~~t~~~ 153 (516)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 765 455555543
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.10 E-value=25 Score=32.12 Aligned_cols=180 Identities=12% Similarity=0.038 Sum_probs=108.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHH-
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL- 236 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~- 236 (516)
....|++-+|.+.+ .++..=|.+.+++++|.+++.. -...+.++|+...|-++
T Consensus 23 ~I~~G~yYEAhQ~~---------------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 23 KIKAGDYYEAHQTL---------------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHTCHHHHHHHH---------------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HhhccChHHHHHHH---------------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34456666665554 4455558888999999887543 23445677887766664
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHhHH---hcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043362 237 ---FDEMLKSGIRPDGTAFVSVLSACSHAGLTD-KGLEYFYGMKN---KYG--LQPGPEHYTCMVDLLGRAGQLNEALEL 307 (516)
Q Consensus 237 ---~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 307 (516)
.+-..+.+++++......++..+..-..-+ .=.++.+.+.+ +.| ..-++.....+...|.+.|++.+|...
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 444556788888888777777665532111 11222333321 112 223778888999999999999999998
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 308 IESMLVEPDGAVWGALLGACKIH---KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 308 ~~~m~~~p~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
|-... .-|...+..++.-+... |...++-...- ..+--|.-.|+...|..+++...
T Consensus 157 ~i~~~-~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 157 FMLGT-HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTSC-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhCC-CccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 76321 11455666555554444 55444322222 22234556788889988888664
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.66 E-value=11 Score=27.65 Aligned_cols=88 Identities=16% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043362 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140 (516)
Q Consensus 61 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 140 (516)
..-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||++.|-+|-. .+.|...++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667666666666552 33333334455678999999999999999999999987754 46777788877777777
Q ss_pred HCCCCCCHHHHHH
Q 043362 141 SLGVCPDAVTFVG 153 (516)
Q Consensus 141 ~~g~~p~~~t~~~ 153 (516)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.10 E-value=20 Score=31.90 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=70.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
....+.|..++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+...-..+...+.++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHH
Confidence 34556788888888877777652 445666667778888888888888888777643 45433222222222222111
Q ss_pred HHHHHHHHhc--C--CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 302 NEALELIESM--L--VEPDGAVWGALLGAC--KIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 302 ~~A~~~~~~m--~--~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
. .++|..- + ......-...|+.+. ...|+.++|..+-.++.+.-|..+.
T Consensus 81 R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 81 R--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp H--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred H--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1 1233221 1 111222223344443 3468888888888888777665543
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.96 E-value=9 Score=28.21 Aligned_cols=60 Identities=5% Similarity=-0.087 Sum_probs=42.0
Q ss_pred HHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 30 EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 30 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
++.+-++.+....+.|++....+.|+||.+.+++..|.++++-+...- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555566666666778888888888888888888888888887765432 333445665554
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.17 E-value=6.6 Score=30.65 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
+.-+..+-++.+....+.|++....+.|.+|.+.+++..|.++|+.++.+. .+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 344666777777778899999999999999999999999999999998753 3445567777653
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.00 E-value=9.2 Score=29.86 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
...+--|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 33444556677778888888888888888888775
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.93 E-value=23 Score=28.79 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
.+---+..+|.+.|++++|..+++.++
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 343446666777777777777777765
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.08 E-value=25 Score=27.76 Aligned_cols=70 Identities=10% Similarity=0.011 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHhcC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 282 QPGPEHYTCMVDLLGRAGQLN---EALELIESML-VEP-D-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 282 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~-~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.|+..+--.+.-++.+..+.+ ++..+++... ..| + ....-.|.-++.+.|++++|.+..+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 345555445555555555433 3444444433 223 2 33334466778999999999999999999999886
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.58 E-value=64 Score=31.18 Aligned_cols=176 Identities=8% Similarity=0.005 Sum_probs=108.0
Q ss_pred CCHHHHHHHHcccC-----CCC----chHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHH----HHhc
Q 043362 96 GSVDYGRKLFDQVP-----EKG----LITWNAMISGYAQNGLATHVLELYREMKS-LGVCPDAVTFVGVLSS----CAHL 161 (516)
Q Consensus 96 g~~~~A~~~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~----~~~~ 161 (516)
|+++.|.+.+-.+. ..| ......++..|...|+++...+.+..+.. .|..+... ..++.. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcC
Confidence 67888887765443 222 23567788999999999998887776654 34333332 333333 3333
Q ss_pred CChHHHHHHHHHHHH------cC-CCC---chHHHHHHHHHHHhCCCHHHHHHHHhcCCC----C-----CHhHHHHHHH
Q 043362 162 GAHSVGLEVEQQIQA------NG-FGS---NPFLNNALINMYARCGNLKKARAIFDGMPR----K-----TVVSWTAIIG 222 (516)
Q Consensus 162 g~~~~a~~~~~~~~~------~g-~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~-----~~~~~~~li~ 222 (516)
...+.... ..... .| +-. .......|...|...|++.+|.+++..+.. . -+..+..-+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332211 11221 11 111 233456789999999999999999887641 1 1346677788
Q ss_pred HHHhcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHh
Q 043362 223 GYGIHGHGEVAVQLFDEMLK----SGIRPDG--TAFVSVLSACSHAGLTDKGLEYFYGM 275 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~ 275 (516)
.|...+++.+|..++++... ....|+. ..+...+..+.+.+++.+|.+.|..+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 89999999999999998643 2222221 23445556667778887776665444
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.22 E-value=21 Score=27.88 Aligned_cols=45 Identities=7% Similarity=-0.028 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 65 LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 65 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
+.++-++.+...++-|++.+..+.+.++-+.+++..|.++|+.++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555566666666666666666666666666666554
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.53 E-value=44 Score=27.97 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=20.9
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcC
Q 043362 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127 (516)
Q Consensus 79 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 127 (516)
.++..+-...+..+.+.|..+....+.+.+..++...-...+.+..+.+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 3455555555555555555333333333333333333333333333333
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.15 E-value=1.3e+02 Score=32.29 Aligned_cols=248 Identities=9% Similarity=-0.013 Sum_probs=129.1
Q ss_pred HHHcCCHHHHHHHHcccCCC----Cc--hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 043362 92 YVKCGSVDYGRKLFDQVPEK----GL--ITWNAMISGYAQNGLATHVLELYREMKSLGV--C-----PDAVTFVGVLSSC 158 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~t~~~ll~~~ 158 (516)
....|+.+++..+++.-... +. ..-..+.-|....|..+++++++.......- . +....-.++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567788888888876541 21 2233344455666666678887777654311 0 1111112222223
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCCHHH
Q 043362 159 AHLGA-HSVGLEVEQQIQANGFGSNP--FLNNALINMYARCGNLKKARAIFDGMPR--K-TVVSWTAIIGGYGIHGHGEV 232 (516)
Q Consensus 159 ~~~g~-~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~ 232 (516)
+..|. -+++...+..++...- ... ...-+|...|.-.|+-+....++..+.+ . ++.-..++.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 33332 2455555555554321 111 1223444556677887776666654431 2 22223334445567899988
Q ss_pred HHHHHHHHHHcCCCCCHHHHH---HHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 233 AVQLFDEMLKSGIRPDGTAFV---SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 233 A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
+..+.+.+... ..|. .-|. ++..+|+..|+.....+++..+.++ ...++.....+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888763 1222 2232 3455788899988888899888753 22233333333334445676666667766
Q ss_pred hcCCCCCHHHHHH--HHHHHHhcCCH-HHHHHHHHHHh
Q 043362 310 SMLVEPDGAVWGA--LLGACKIHKNV-ELAELAFGKVI 344 (516)
Q Consensus 310 ~m~~~p~~~~~~~--ll~~~~~~g~~-~~A~~~~~~~~ 344 (516)
.+....|..+-.. +.-+....|+. .++..++..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 5542234333322 22222223322 45666666664
No 268
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.44 E-value=1.4e+02 Score=30.60 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=28.6
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcC
Q 043362 14 CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60 (516)
Q Consensus 14 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 60 (516)
.| ++|-.+.+.|.+++|.++.++.... +.--...|...+..++..
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 55 5788999999999999998776532 111124566677777643
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.92 E-value=15 Score=32.64 Aligned_cols=58 Identities=28% Similarity=0.334 Sum_probs=43.4
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
..+.+.|.+++|++....-. ..| |...-..|+..++..|+++.|..-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34567788888887766543 456 56666677788888889998888888888888854
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.08 E-value=51 Score=31.67 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD--GTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 218 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
..+..-|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+.....++.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444455555555555555444211111 2334444555555555555555555544
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.94 E-value=1.1e+02 Score=28.98 Aligned_cols=162 Identities=9% Similarity=-0.013 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CC--CchHHHHHHHHHHHhCC-CHHHHHHHHhcCCC---CCHhHH---
Q 043362 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQAN-G-FG--SNPFLNNALINMYARCG-NLKKARAIFDGMPR---KTVVSW--- 217 (516)
Q Consensus 149 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g-~~--~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~~---~~~~~~--- 217 (516)
.....+...|.+.|+.++..+++...... + ++ ........|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777776655431 1 11 11233456666665532 23322233222211 011122
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHhHHhc-CCCCCHHHH
Q 043362 218 ---TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG-----TAFVSVLSACSHAGLTDKGLEYFYGMKNKY-GLQPGPEHY 288 (516)
Q Consensus 218 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~ 288 (516)
..++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 13566677777777777777766653111121 123344455666667666666666554321 122333222
Q ss_pred H----HHHHHHH-hcCCHHHHHHHHHh
Q 043362 289 T----CMVDLLG-RAGQLNEALELIES 310 (516)
Q Consensus 289 ~----~li~~~~-~~g~~~~A~~~~~~ 310 (516)
. +-..++. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 1 1122334 55666666665544
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.31 E-value=73 Score=26.81 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=71.5
Q ss_pred HHHHHHHHhcC-CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCccchHHHhhHHHHcCChhHHHHHHH
Q 043362 302 NEALELIESML-VEPDG---AVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
+.+...|.... .+-|. ..|-..+..| ..++...+..+|..|.. ++...+..|...+..+...|++++|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444454443 33453 4454444444 24557788899998865 557777889999999999999999999999
Q ss_pred HHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC
Q 043362 376 MMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432 (516)
Q Consensus 376 ~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~ 432 (516)
.=.+.+-. ....+.........+|.+.+++.|
T Consensus 140 ~GI~~~A~-------------------------P~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCR-------------------------PYNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCB-------------------------SHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCc-------------------------cHHHHHHHHHHHHHHHHhcCCCCC
Confidence 87765543 234455556778888888887433
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.48 E-value=24 Score=34.09 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCch----HH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN---GFGSNP----FL 185 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~~~~----~~ 185 (516)
++..+..-|.+.|++++|.+.|.++... +..--...+-.++..+...+++..+.....++... +-.++. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556666677777777777777776653 22222345556666666777777777766666442 212221 11
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 186 NNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 186 ~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
+..++ +...+++.+|...|-+.
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHH
Confidence 22222 33467777776666543
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.10 E-value=74 Score=26.47 Aligned_cols=80 Identities=11% Similarity=-0.120 Sum_probs=35.6
Q ss_pred CChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHH
Q 043362 45 INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124 (516)
Q Consensus 45 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 124 (516)
+|...-...+.++...++.+....+. .+++ .++..+-...+..+.+.|+.+....+.+.+..++...-...+.+..
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44444444555555544432222222 2222 3455555556666666665443333444444444433333444444
Q ss_pred HcCC
Q 043362 125 QNGL 128 (516)
Q Consensus 125 ~~g~ 128 (516)
+.|+
T Consensus 107 ~~~~ 110 (211)
T 3ltm_A 107 QIGD 110 (211)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4443
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=57.15 E-value=81 Score=25.97 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043362 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158 (516)
Q Consensus 79 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 158 (516)
.+|..+....+..+.+.|..+....+.+.+..++...-...+.+..+.|..+ +...+.++.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3444444444555555554333444444444444433333444444444432 3333333332 24444444455555
Q ss_pred HhcCC
Q 043362 159 AHLGA 163 (516)
Q Consensus 159 ~~~g~ 163 (516)
...++
T Consensus 101 ~~~~~ 105 (201)
T 3ltj_A 101 GQIGD 105 (201)
T ss_dssp HHHCC
T ss_pred HHhCc
Confidence 55544
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.15 E-value=1.6e+02 Score=27.85 Aligned_cols=213 Identities=11% Similarity=0.021 Sum_probs=97.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc-----hHHHHHHHHHHHhCCCHHHHHHHHhcCC------CCCHhHHH----
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSN-----PFLNNALINMYARCGNLKKARAIFDGMP------RKTVVSWT---- 218 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~~g~~~~A~~~~~~m~------~~~~~~~~---- 218 (516)
+...|...|++.+|..++..+.+.--..| ..++..-+.+|...|++.++...+.... .+++..-.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 44555566666666665555554211111 2334445555666666666655554331 01111111
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHc-C--CCCC---HHHHHHHHHHHhccCChHHHHHHHH-HhHHhcCCCCCHHHHHH
Q 043362 219 AIIGGYG-IHGHGEVAVQLFDEMLKS-G--IRPD---GTAFVSVLSACSHAGLTDKGLEYFY-GMKNKYGLQPGPEHYTC 290 (516)
Q Consensus 219 ~li~~~~-~~g~~~~A~~~~~~m~~~-g--~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~-~~~~~~~~~p~~~~~~~ 290 (516)
.-...+. ..+++..|...|-+..+. . ..|. ...|. ++.+.......+- ..++. .....+ ..|....+..
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl-vL~aLl~~~r~el-~~~l~~~~~~~~-~~pei~~l~~ 261 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM-LLCKIMLGQSDDV-NQLVSGKLAITY-SGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTCGGGH-HHHHHSHHHHTT-CSHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHcCCHHHH-HHHhcccccccc-CCccHHHHHH
Confidence 1112234 566677776666554321 0 0111 12232 2222222222222 22221 111222 3455556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC--CCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 291 MVDLLGRAGQLNEALELIESML--VEPDGAVW---GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
++.+| +.+++.+...+++... ...|.... ..|..... ...+.++ ..|-....+..++..+.-
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~iA~~l~l-- 328 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAHVAESIQL-- 328 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHHHHHHHTC--
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHHHHHHHCc--
Confidence 66665 4567777777776653 23354321 11111110 1111111 346555556666655542
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043362 366 NLDGIMRVRMMMRERRL 382 (516)
Q Consensus 366 ~~~~a~~~~~~m~~~~~ 382 (516)
..+++...+..|...|.
T Consensus 329 s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 57899999999987664
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=51.99 E-value=2.1e+02 Score=29.21 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=16.7
Q ss_pred HhcCCHHHHHHHHHhcCCCCC
Q 043362 296 GRAGQLNEALELIESMLVEPD 316 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~~~p~ 316 (516)
...|++++|++.++++.+-|.
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC
T ss_pred HHcCCHHHHHHHHHhCCCCCC
Confidence 678999999999998875553
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.31 E-value=77 Score=26.82 Aligned_cols=93 Identities=14% Similarity=0.027 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChh---hHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChh--HH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSV---TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS--VG 85 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~ 85 (516)
|..-++. +...++.|+.+-+..+++.+.+.|..++.. -.+ .+...+..|+.+ +.+.+++.|..++.. ..
T Consensus 6 d~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g 79 (241)
T 1k1a_A 6 DEDGDTP-LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPS----VVRLLVTAGASPMALDRHG 79 (241)
T ss_dssp -CTTCCH-HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTS
T ss_pred CCCCCcH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHH----HHHHHHHcCCCccccCCCC
Confidence 3333333 344566788877777777766666555432 222 233333445543 444555666554322 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccC
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
.+.+...++.|+.+-+..+++...
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAA 103 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 233444456677777666666543
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.23 E-value=74 Score=24.52 Aligned_cols=63 Identities=11% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCC
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGL--ATHVLELYREMKSLGVCPD 147 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 147 (516)
.+.++.=|...|+.++|.+.++++..+.- +...++..+.-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35677778888888888888888876532 334444444444432 3456677777776665443
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.78 E-value=1.4e+02 Score=28.25 Aligned_cols=14 Identities=7% Similarity=0.247 Sum_probs=9.0
Q ss_pred HHHHHHHhCCCCCC
Q 043362 419 KLENLVQEHDGTKR 432 (516)
Q Consensus 419 ~l~~~m~~~g~~p~ 432 (516)
++.+.+.+.|..|+
T Consensus 358 ~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 358 DIVTLLLKNGASPN 371 (437)
T ss_dssp HHHHHHHHTTCCSC
T ss_pred HHHHHHHHCcCCCC
Confidence 45555666777766
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.73 E-value=1.7e+02 Score=28.84 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-h------HHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTV-V------SWT-AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT---- 250 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~------~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 250 (516)
..++|.++..|...+.++.|..+..+..-|.. . .|. -+...++-.+++.+|.+.|......- +++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 56778889999999999999999988764422 1 222 13455667889999988888876542 22211
Q ss_pred ---H--HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043362 251 ---A--FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325 (516)
Q Consensus 251 ---t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 325 (516)
. |..++..+ .|+... ..+|. .+++......|..|+.++ +.|++++-...++.-. .
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 1 11111111 233322 11111 111111233466677765 5677766555554322 2
Q ss_pred HHHhcCCHHHHHHHHHHHhh-----cCCCCccchHHHhhHHHHcC--ChhHHHHHHHHHHhCCC
Q 043362 326 ACKIHKNVELAELAFGKVIK-----LEPMNTGYYVLLSNIYSEAR--NLDGIMRVRMMMRERRL 382 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~ 382 (516)
.+.+.|.+....++-..+.+ +... ..-..+.....+.+ ..++|+.+...|...|.
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~--YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLT--YKKISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCC--SSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 23444554444433332221 2211 11123333443333 34678988888887664
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.50 E-value=90 Score=27.12 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=7.1
Q ss_pred HhCCCHHHHHHHHhc
Q 043362 194 ARCGNLKKARAIFDG 208 (516)
Q Consensus 194 ~~~g~~~~A~~~~~~ 208 (516)
+..|+.+-...+++.
T Consensus 113 ~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 113 AVYGKVKALKFLYKR 127 (285)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344555544444443
No 283
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=47.50 E-value=1.7e+02 Score=26.73 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=40.7
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 313 VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 313 ~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+|. ..+.++-+..+.+++|+..|..+.++++++.|+.. ..++|.++...-.+.
T Consensus 201 LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 201 LSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 4453 55667777888999999999999999999998532 345677777766554
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=46.22 E-value=74 Score=30.26 Aligned_cols=331 Identities=12% Similarity=0.096 Sum_probs=153.5
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhh--HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHH
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVT--MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS--VGNCLMTMYV 93 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~ 93 (516)
.+..-+..|+.+ +++.+.+.|..|+... ..+.|...+..|+.+- .+.+++.|..++.. ...+.+...+
T Consensus 17 ~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV----AKYLLQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHH----HHHHHHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 344445667754 4444555666665332 1223333444566554 44455566544321 1233455566
Q ss_pred HcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHH
Q 043362 94 KCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPD---AVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a 167 (516)
+.|+.+-+.-+++.-..++. .-++. +...++.|+.+-+..++ +.+..++ .... +.+...+..|+.+-+
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALL----EKEASQACMTKKGF-TPLHVAAKYGKVRVA 162 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSC-CHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCC-CHHHHHHHcCCHHHH
Confidence 78998888888876544332 12222 33445667766554444 3333222 1111 234444566776544
Q ss_pred HHHHHHHHHcCCCCchH--HHHHHHHHHHhCCCHHHHHHHHhcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 168 LEVEQQIQANGFGSNPF--LNNALINMYARCGNLKKARAIFDGMPRKTV---VSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
. .+.+.|..++.. ...+.+...+..|+.+-+.-+++.-..++. ..++.+ ...+..|+.+-+. .+.+
T Consensus 163 ~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~----~Ll~ 233 (437)
T 1n11_A 163 E----LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVAR----SLLQ 233 (437)
T ss_dssp H----HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHH----HHHH
T ss_pred H----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHH----HHHH
Confidence 4 444555444321 112234455677888877777765443322 222233 3334566654443 3444
Q ss_pred cCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhcC--CC
Q 043362 243 SGIRPDGT---AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP---EHYTCMVDLLGRAGQLNEALELIESML--VE 314 (516)
Q Consensus 243 ~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~--~~ 314 (516)
.|..++.. ..+ .+...+..|..+-...+++ . +..++. .-.+ .+...++.|+.+-+.-+++.-. ..
T Consensus 234 ~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~-~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 234 YGGSANAESVQGVT-PLHLAAQEGHAEMVALLLS----K-QANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp TTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHT----T-TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred cCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHh----c-CCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCccCCC
Confidence 44443321 112 2333345566655444432 2 333321 1111 2233446678777766666532 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCC
Q 043362 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 384 (516)
.+..-++.|. .....|+.+....+++.-...+..+..-...| ..-...|..+ +.+.+.+.|..+
T Consensus 307 ~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~~ 370 (437)
T 1n11_A 307 TTRMGYTPLH-VASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGASP 370 (437)
T ss_dssp CCSSCCCHHH-HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCS
T ss_pred CCCCCCCHHH-HHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCCC
Confidence 1222222333 33456777766666554332222221112222 2233455543 444455566554
No 285
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=46.14 E-value=6.6 Score=23.03 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=8.7
Q ss_pred cccccCCCCC
Q 043362 506 KSGFCSCKDY 515 (516)
Q Consensus 506 ~~g~~~~~~~ 515 (516)
++|.|||+-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 7899999976
No 286
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=45.61 E-value=1.2e+02 Score=24.75 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=7.4
Q ss_pred chHHHHHHHHHHHhCCC
Q 043362 182 NPFLNNALINMYARCGN 198 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~ 198 (516)
+..+-...+.++.+.|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33444444444444444
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.47 E-value=65 Score=27.96 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=43.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLK--SGIRP----DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
+..+....++++|.+++++..+ .+.++ +.......+..-.....-.-+..+.+.+. . .+++......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHHH
Confidence 4455556666666666665443 11221 11111222222222222223333333332 1 4456666667778
Q ss_pred HHhcCCHHHHHHHHHhc
Q 043362 295 LGRAGQLNEALELIESM 311 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m 311 (516)
+.+.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888877554
No 288
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=45.31 E-value=6.3 Score=26.39 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.7
Q ss_pred ceEEEecCCccccccccccCC
Q 043362 492 RQFIVRDATRFHHFKSGFCSC 512 (516)
Q Consensus 492 ~~~~~~~~~~~h~~~~g~~~~ 512 (516)
..|-+.|.+..|+|+||+-+-
T Consensus 8 k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE
T ss_pred eeEecCCCcEEEEEcCCceeh
Confidence 467788999999999998653
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.22 E-value=1.1e+02 Score=25.84 Aligned_cols=54 Identities=19% Similarity=0.031 Sum_probs=30.8
Q ss_pred HhhcCCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 56 ICVDPGYLWLGMCCHCICVKFGLDLDFS--VGNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
..+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 70 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3345577777777777666666544322 12234445556777777666665433
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.87 E-value=1.2e+02 Score=26.21 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=15.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 043362 119 MISGYAQNGLATHVLELYREMKS 141 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~ 141 (516)
-+..+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566667777777777766543
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.86 E-value=63 Score=24.91 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 043362 187 NALINMYARCGNLKKARAIFDGMPRKT---VVSWTAIIGGYGIHGH--GEVAVQLFDEMLKSGIR 246 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 246 (516)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456666666777777777777665441 2233344444444332 24455666666655543
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.28 E-value=31 Score=30.09 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=50.7
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChh-------hHHHHHHHhh--cCCCchHHHHHHHHHHHhC---------CCC
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSV-------TMLCLLPICV--DPGYLWLGMCCHCICVKFG---------LDL 80 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~ 80 (516)
+...++.|+.+....+++.+.+.|..++.. -.+.|..|.. +.|+.+-++.+++.-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 334556788888888888887777666533 2344444442 5677777776666543311 000
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
......+.+...+..|+.+-+..+++.-.
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 00011223444456677777777766543
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.55 E-value=71 Score=25.50 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCC
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGL--ATHVLELYREMKSLGVCP 146 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 146 (516)
.+.++.=|...|+.++|.+.++++..+.. ++..++..+.-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45677778888888888888888866532 334444444444322 345666777776666543
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.53 E-value=1.5e+02 Score=23.63 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=37.6
Q ss_pred HHHHHHHHhh--cCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 336 AELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 336 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
+..+|..|.. ++...+..|...+..+...|++++|.++++.=.+.+-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 6777777765 45666778888899999999999999999887766543
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.40 E-value=34 Score=29.04 Aligned_cols=90 Identities=9% Similarity=0.002 Sum_probs=39.4
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhh--HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhH--
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT--MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV-- 84 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-- 84 (516)
..|....+.|.. .++.|+.+. ++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++...
T Consensus 4 ~~d~~~~~~l~~-A~~~g~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~ 74 (240)
T 3eu9_A 4 HIDDYSTWDIVK-ATQYGIYER----CRELVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGD 74 (240)
T ss_dssp CCSCGGGCCHHH-HHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTT
T ss_pred ccccccchHHHH-HHHcCChHH----HHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCC
Confidence 334444444554 345666543 344445554443221 112333334445544 3344445543322111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHcc
Q 043362 85 -GNCLMTMYVKCGSVDYGRKLFDQ 107 (516)
Q Consensus 85 -~~~ll~~~~~~g~~~~A~~~f~~ 107 (516)
..+.+...++.|+.+-+..+++.
T Consensus 75 ~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 75 LNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred cCCChhHHHHHcCCHHHHHHHHHc
Confidence 12334444556666666555554
No 296
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.71 E-value=1.8e+02 Score=24.36 Aligned_cols=62 Identities=10% Similarity=0.113 Sum_probs=41.5
Q ss_pred HHHHHHH---HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 043362 118 AMISGYA---QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA-----HSVGLEVEQQIQANGFG 180 (516)
Q Consensus 118 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~g~~ 180 (516)
-+|+++. +..+++.|+-.+.+|.+.| .|.-..-..++.+....|. +..|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3566654 5689999999999999999 7766666666667666653 33344445555555543
No 297
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.61 E-value=35 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHH
Q 043362 96 GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133 (516)
Q Consensus 96 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 133 (516)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999999899999999887767766554
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.39 E-value=3.1e+02 Score=29.43 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 140 (516)
++..+...|..+-|.++....+. +...-..+..+|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66777788999988887777765 44333467888999999999999998753
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.82 E-value=1.7e+02 Score=23.36 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=40.8
Q ss_pred HHHHHHHcccCCCCc-----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 043362 99 DYGRKLFDQVPEKGL-----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149 (516)
Q Consensus 99 ~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 149 (516)
+++..+|..|...++ ..|......+-..|++.+|.++|+.-++.+-+|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 347888888877765 457777888888999999999999999888888543
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.37 E-value=1.3e+02 Score=24.46 Aligned_cols=18 Identities=0% Similarity=0.030 Sum_probs=11.1
Q ss_pred HHHcCCHHHHHHHHcccC
Q 043362 92 YVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~ 109 (516)
.+..|+.+....++..-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345677777777766543
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.36 E-value=87 Score=26.31 Aligned_cols=85 Identities=11% Similarity=0.114 Sum_probs=38.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHHc
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS--VGNCLMTMYVKC 95 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~ 95 (516)
.+...++.|+.+....++..-...-..+|....+.+..++ ..|+.+ +.+.+++.|..++.. ...+.+...++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC-SAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH-HHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH-HcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 3555667788777777766533211122333233333332 334433 344455555444321 111233334455
Q ss_pred CCHHHHHHHHcc
Q 043362 96 GSVDYGRKLFDQ 107 (516)
Q Consensus 96 g~~~~A~~~f~~ 107 (516)
|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll~~ 95 (231)
T 3aji_A 84 GXDEIVKALLVK 95 (231)
T ss_dssp TCHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 666655555544
No 302
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.28 E-value=1.6e+02 Score=26.99 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHh
Q 043362 297 RAGQLNEALELIES 310 (516)
Q Consensus 297 ~~g~~~~A~~~~~~ 310 (516)
+.|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 44555555555554
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.11 E-value=59 Score=25.97 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 043362 187 NALINMYARCGNLKKARAIFDGMPRKT---VVSWTAIIGGYGIHGH--GEVAVQLFDEMLKSGI 245 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 245 (516)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 456666666677777777776665441 2233334444443222 2345556666555543
No 304
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.13 E-value=49 Score=16.64 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHh
Q 043362 410 TVEIYRMLDKLENLVQE 426 (516)
Q Consensus 410 ~~~~~~~l~~l~~~m~~ 426 (516)
+.++|.+++++.+.+++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778888777766653
No 305
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=33.11 E-value=4e+02 Score=26.92 Aligned_cols=239 Identities=9% Similarity=-0.038 Sum_probs=122.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 128 LATHVLELYREMKSLGVCPDAVTFVGVLSS----CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 128 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
+.+.|..+|....... ..+......+-.. ....+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6778888887775432 2233322222222 223342445555555544433 23223333444445678999999
Q ss_pred HHHhcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 204 AIFDGMPRKT---VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 204 ~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
..|+.|.... ....-=+..++...|+.++|..+|+++... . +|-.++.+ .+.|..-. . ....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-------~-~~~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-------L-KIDK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-------C-CCCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-------C-CCCC
Confidence 9998887542 111122344667788888999888887642 1 34443322 22232100 0 0000
Q ss_pred CCCC---H-H--HHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CCc
Q 043362 281 LQPG---P-E--HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEP---MNT 351 (516)
Q Consensus 281 ~~p~---~-~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p---~~~ 351 (516)
+.+. . . .-..-+..+...|....|...+.......+......+.......|..+.++....+....+. .-+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 1110 0 0 11123456778899999988877664334444444555555678888888766654433220 112
Q ss_pred cchHHHhhHHHHcCChhHHHHHHHHHHhCCCCC
Q 043362 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384 (516)
Q Consensus 352 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 384 (516)
..|...+.-+++.-.++...-.--...+.++.+
T Consensus 451 ~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 345556666666555555443322233444443
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.90 E-value=1.4e+02 Score=29.34 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH--HHH-HHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP--EHY-TCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
...++.++.-|.+.+.++.|..+..+..--..-.++. ..| -.+...+.-.+++.+|.+.+....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3557777888888888888888887764100001111 122 234556667788888888777654
No 307
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.24 E-value=2.5e+02 Score=24.36 Aligned_cols=18 Identities=6% Similarity=-0.186 Sum_probs=8.4
Q ss_pred CChhHHHHHHHHHHHcCC
Q 043362 80 LDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 80 ~~~~~~~~ll~~~~~~g~ 97 (516)
++..+-...+..+.+.|.
T Consensus 35 ~~~~vr~~A~~~L~~~~~ 52 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG 52 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHccCC
Confidence 444444444444444444
No 308
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=32.23 E-value=2.9e+02 Score=25.08 Aligned_cols=131 Identities=9% Similarity=0.069 Sum_probs=70.9
Q ss_pred CCchHHHHHHHHhHHC-C----CCCChhhHHHH---HHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 26 SLVSEAVSLFGKMREQ-G----VEINSVTMLCL---LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~-g----~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
-..++|..+|..+... + ..|+....... +..+.+.. --+++..+.+.|+.|..++..-++..+++.=.
T Consensus 163 ~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 163 MSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY----HRDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp SCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHH----CHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 3456788888777643 1 23443222211 12221111 13567777888888888888888888887777
Q ss_pred HHHHHHHHcccCCCCc--hHHH--HHHHH----HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043362 98 VDYGRKLFDQVPEKGL--ITWN--AMISG----YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163 (516)
Q Consensus 98 ~~~A~~~f~~~~~~~~--~~~~--~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 163 (516)
++.+.+++|.+-..+. ..+- +++.. ..+..++++.+..++..... .+......+++-......
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhCCc
Confidence 8888888887653332 1111 11111 12234677777776653221 234445555544444443
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.37 E-value=1e+02 Score=25.05 Aligned_cols=82 Identities=7% Similarity=-0.039 Sum_probs=40.2
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhH--HHHHHHHHHHcCCH
Q 043362 21 GYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV--GNCLMTMYVKCGSV 98 (516)
Q Consensus 21 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~ 98 (516)
..+..|+.+....++..-...--.+|....+.+..++ ..|+. ++.+.+++.|..++... ..+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3456677766666654321000112222233333333 33444 34555566665554321 12334455667888
Q ss_pred HHHHHHHcc
Q 043362 99 DYGRKLFDQ 107 (516)
Q Consensus 99 ~~A~~~f~~ 107 (516)
+-+..+++.
T Consensus 86 ~~~~~Ll~~ 94 (201)
T 3hra_A 86 EILAYMLKH 94 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 887777744
No 310
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=30.87 E-value=1.3e+02 Score=21.38 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHH
Q 043362 95 CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 132 (516)
....++|.++++.++.++..+|..++.+..+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 46678888888888888888888888888877764443
No 311
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.58 E-value=3.2e+02 Score=24.83 Aligned_cols=49 Identities=4% Similarity=-0.084 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
.+..+-+....+.+++.-|..+-+++++.+-.|+ ..++|++++....+.
T Consensus 208 LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 208 NALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHHhcC
Confidence 3556667777888888888888888887653222 235566666666554
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.59 E-value=62 Score=23.48 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=27.9
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043362 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 197 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 234 (516)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45778888888888888888888888887666655443
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.60 E-value=2.7e+02 Score=23.28 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCH--HHHH-----HHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 301 LNEALELIESMLVEPDG--AVWG-----ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 301 ~~~A~~~~~~m~~~p~~--~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
++.|+.+++.+...-|. .... ..+..|.+.|.+++|.+++++...-.+.+...-.-|
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 45677777776622221 1111 233568888999999999988777665444333333
No 314
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.52 E-value=2.9e+02 Score=23.62 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=38.0
Q ss_pred HHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCChH
Q 043362 193 YARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA--FVSVLSACSHAGLTD 266 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~ 266 (516)
.+..|+.+-+..+++... ..|..-++.+..+ +..+......++++.+.+.|..++... -.+.+...+..|..+
T Consensus 155 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 233 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233 (285)
T ss_dssp HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 344566666665555421 1222223333322 334554445566666777776554321 112333444567766
Q ss_pred HHHHHHH
Q 043362 267 KGLEYFY 273 (516)
Q Consensus 267 ~a~~~~~ 273 (516)
-+..+++
T Consensus 234 ~v~~Ll~ 240 (285)
T 1wdy_A 234 LVQRLLE 240 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
No 315
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.31 E-value=1.1e+02 Score=23.24 Aligned_cols=43 Identities=5% Similarity=-0.017 Sum_probs=29.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 135 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
+|+.+....+.|+...-..-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4556666666666554444455566788999999998887763
No 316
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.22 E-value=40 Score=21.94 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=18.4
Q ss_pred CCCchHHHHHHHHhHHCC-CCCChh
Q 043362 25 NSLVSEAVSLFGKMREQG-VEINSV 48 (516)
Q Consensus 25 ~g~~~~A~~l~~~m~~~g-~~p~~~ 48 (516)
+-+++.|+..|.++...| ++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 457899999999998765 666554
No 317
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.62 E-value=2.5e+02 Score=22.62 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=37.2
Q ss_pred HHHHHHHHhh--cCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 336 AELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 336 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
+..+|..|.. ++...+..|...+..+...|++.+|.++++.=.+.+-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 5567777754 55667778888899999999999999999887776543
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.77 E-value=1.3e+02 Score=23.51 Aligned_cols=63 Identities=8% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 238 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 346678888775433 4455555566677888999998765 55567777777788889988863
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.26 E-value=1.8e+02 Score=22.89 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=41.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 238 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
+.+.+.|.+++..- ..++..+...+..-.|.++++.+.+. +...+..|.-..++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 34566777765433 34555565666677888999988776 55567777667778888888763
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.24 E-value=3.9e+02 Score=24.37 Aligned_cols=61 Identities=10% Similarity=0.205 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCC
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNG-LATHVLELYREMKSLGVC 145 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~ 145 (516)
...++.=|...|+.++|...++++..+.. .....+..+.-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 35677888888999999999988876642 22222222222211 234455667777666543
No 321
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.94 E-value=3e+02 Score=22.96 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=33.3
Q ss_pred HHHHHHH---HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043362 118 AMISGYA---QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162 (516)
Q Consensus 118 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 162 (516)
.+|+++. +..+++.|+-.+.+|++.|-.|.-..-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4566664 56899999999999999987777666666666665554
No 322
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.42 E-value=2.3e+02 Score=24.85 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=8.6
Q ss_pred HHHHHhCCCHHHHHHHHh
Q 043362 190 INMYARCGNLKKARAIFD 207 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~ 207 (516)
+...+..|+.+-+.-+++
T Consensus 165 L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH
Confidence 333445555555544443
No 323
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=23.48 E-value=87 Score=21.62 Aligned_cols=33 Identities=6% Similarity=-0.011 Sum_probs=17.9
Q ss_pred CCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHh
Q 043362 6 IKS-THLTVCYNALISGYVLNSLVSEAVSLFGKM 38 (516)
Q Consensus 6 m~~-~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 38 (516)
||. .|++.||+-+...+-+.--..+++.+.+++
T Consensus 29 IPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 442 356777776665554444445555554443
No 324
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.30 E-value=3.6e+02 Score=23.26 Aligned_cols=18 Identities=6% Similarity=-0.056 Sum_probs=7.3
Q ss_pred CchHHHHHHHHHHHhCCC
Q 043362 181 SNPFLNNALINMYARCGN 198 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~ 198 (516)
++..+-...+.+..+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 325
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=23.28 E-value=16 Score=18.47 Aligned_cols=13 Identities=46% Similarity=1.508 Sum_probs=8.7
Q ss_pred ccccccc--CCCCCC
Q 043362 504 HFKSGFC--SCKDYW 516 (516)
Q Consensus 504 ~~~~g~~--~~~~~w 516 (516)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777777 466655
No 326
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.90 E-value=2.2e+02 Score=24.93 Aligned_cols=89 Identities=4% Similarity=-0.017 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH
Q 043362 292 VDLLGRAGQLNEALELIESMLVEPDG-AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
+...+..|+.+-+..+++.-....+. .-++ .+......|+.+-+..+++.-...+..+..-....+......|+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~--- 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLS-CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI--- 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHH-HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH---
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCcc-HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH---
Confidence 34445667777666666654422222 2333 344445678888887777765554432322222212223344553
Q ss_pred HHHHHHHHhCCCCCC
Q 043362 371 MRVRMMMRERRLKKD 385 (516)
Q Consensus 371 ~~~~~~m~~~~~~~~ 385 (516)
++.+.+.+.|..++
T Consensus 209 -~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 209 -EMLQALFKYDINIY 222 (285)
T ss_dssp -HHHHHHTTSCBCST
T ss_pred -HHHHHHHHcCCCCC
Confidence 34555666666544
No 327
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=21.90 E-value=3.5e+02 Score=22.64 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 043362 229 HGEVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 283 (516)
...++.++|..|...|+--.. .-|......+...|++.+|.++|..-++. +-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 355777777777776655442 34455555666677777777777766654 4444
No 328
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.89 E-value=1.7e+02 Score=24.51 Aligned_cols=87 Identities=14% Similarity=-0.018 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCc----------------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKGL----------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT- 150 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t- 150 (516)
.+...+..|+.+-+..+++.-...+. .-++.| ...+..|+.+ +++.+.+.|..++...
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEE----IVRLLIEHGADIRAQDS 152 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCCC
Confidence 34445567777777777665433222 112222 2333444443 3333344454443211
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043362 151 -FVGVLSSCAHLGAHSVGLEVEQQIQANGF 179 (516)
Q Consensus 151 -~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 179 (516)
-.+.+...+..|+.+.+..+.+.+.+.|.
T Consensus 153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp TSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 11233444555666666666666666553
No 329
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=21.16 E-value=62 Score=23.11 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCC-CCCchhhhhhhhhhhccHHHHHHHh
Q 043362 408 HQTVEIYRMLDKLENLVQEHDGTKR-SDQKNSEEHLNDTEVHSEKLAIAFG 457 (516)
Q Consensus 408 ~~~~~~~~~l~~l~~~m~~~g~~p~-~~~~~~~~~~~~~~~~~~~la~~~~ 457 (516)
+...++...+++-..+++..|+.|| -.+..+ ..-+.++.+-..||
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~e-----ayef~~e~v~~e~g 58 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGRE-----AYNFLSNLLKKEME 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECHH-----HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcHH-----HHHHHHHHHhHhhc
Confidence 3455667777777888889999999 122222 12245555555665
No 330
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.13 E-value=29 Score=20.55 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=8.4
Q ss_pred eeeecccchh
Q 043362 472 NLRICGDCHL 481 (516)
Q Consensus 472 ~l~~~~~~~~ 481 (516)
+.|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 6799999974
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.02 E-value=3.9e+02 Score=22.79 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhh--cCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 334 ELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 334 ~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
+.+..+|..|.. ++...+..|...+..+...|++.+|.++++.=.+.+-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 355667777754 5566777888899999999999999999987766543
No 332
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.57 E-value=4.7e+02 Score=23.58 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 169 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
+++..+.+.|+.|...+..-++..+.+.=.++.+.++++.+
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 45555666666666666666666666655666666666654
Done!