BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043364
         (335 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q66HG5|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2
           PE=2 SV=1
          Length = 663

 Score = 38.5 bits (88), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 185 GWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 243
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 244 LWQLSGIPCEH-ACRCIHSWGDK 265
           LW L G P  + A R   S+G +
Sbjct: 406 LWVLLGTPAGYVAARFYKSFGGE 428


>sp|Q5R8Y6|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2
           SV=1
          Length = 663

 Score = 38.5 bits (88), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 185 GWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 243
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 244 LWQLSGIPCEH-ACRCIHSWGDK 265
           LW L G P  + A R   S+G +
Sbjct: 406 LWVLLGTPAGYVAARFYKSFGGE 428


>sp|P58021|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2
           SV=1
          Length = 662

 Score = 38.5 bits (88), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 185 GWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 243
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 346 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 404

Query: 244 LWQLSGIPCEH-ACRCIHSWGDK 265
           LW L G P  + A R   S+G +
Sbjct: 405 LWVLLGTPAGYVAARFYKSFGGE 427


>sp|Q99805|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1
           SV=1
          Length = 663

 Score = 38.5 bits (88), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 185 GWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 243
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 244 LWQLSGIPCEH-ACRCIHSWGDK 265
           LW L G P  + A R   S+G +
Sbjct: 406 LWVLLGTPAGYVAARFYKSFGGE 428


>sp|Q9UGT4|SUSD2_HUMAN Sushi domain-containing protein 2 OS=Homo sapiens GN=SUSD2 PE=1
           SV=1
          Length = 822

 Score = 32.7 bits (73), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 10  LPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQ 69
           LP   C + +   DS  FF     YG   E+G  +C    G      +V+  L YG  +Q
Sbjct: 310 LPDCPCTLTQARADSGRFFTD---YGCDMEQGS-VCTYHPGAVHCVRSVQASLRYGSGQQ 365

Query: 70  CCFSLYGRMVV 80
           CC++  G  ++
Sbjct: 366 CCYTADGTQLL 376


>sp|Q5UBY2|FRS1_ARATH Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1
           PE=1 SV=1
          Length = 687

 Score = 32.3 bits (72), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 238 MTCSCRLWQLSGIPCEHACRCIHSWGDKL--DKYVHRLWSVD 277
           + CSCRL++L G  C HA   +   G+     +YV + W+ D
Sbjct: 451 VVCSCRLFELKGFLCRHAMIVLQMSGELSIPSQYVLKRWTKD 492


>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2
           PE=2 SV=1
          Length = 807

 Score = 32.0 bits (71), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 223 FVSRHGFVFEVNRELMT--CSCRLWQLSGIPCEHACRCIHS 261
           F  R  F   +N EL+   CSC L++  G  C+HA   + S
Sbjct: 493 FEERQNFFVALNNELLDACCSCHLFEYQGFLCKHAILVLQS 533


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,140,281
Number of Sequences: 539616
Number of extensions: 5124051
Number of successful extensions: 9851
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9849
Number of HSP's gapped (non-prelim): 10
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)