Query 043364
Match_columns 335
No_of_seqs 186 out of 1327
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0z_A Glycoprotein G2; zinc-b 52.8 5 0.00017 23.7 1.0 15 238-252 22-36 (42)
2 3e1k_B Lactose regulatory prot 44.0 1.9 6.5E-05 21.4 -1.4 12 324-335 5-16 (22)
3 3bts_E Regulatory protein GAL4 39.0 1.8 6.3E-05 22.4 -2.0 11 325-335 4-14 (26)
4 2ezd_A High mobility group pro 33.7 35 0.0012 17.7 2.3 12 308-319 3-14 (26)
5 2fcj_A Small toprim domain pro 19.3 69 0.0024 23.9 2.6 32 41-72 50-84 (119)
6 4g3o_A E3 ubiquitin-protein li 18.6 99 0.0034 19.8 2.8 27 51-77 17-43 (58)
7 2bw3_A Transposase; DNA recomb 17.5 1.9E+02 0.0066 26.9 6.1 66 10-80 132-200 (534)
8 1hyk_A Agouti related protein; 17.2 40 0.0014 20.3 0.7 17 238-254 29-45 (46)
9 2ejs_A Autocrine motility fact 13.4 1.6E+02 0.0056 18.8 2.9 27 50-76 12-38 (58)
10 2esy_A LUNG surfactant protein 13.0 63 0.0022 17.6 0.7 8 247-254 12-19 (32)
No 1
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=52.85 E-value=5 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=13.0
Q ss_pred ceecccCcccCCCcc
Q 043364 238 MTCSCRLWQLSGIPC 252 (335)
Q Consensus 238 ~~CsC~~~~~~giPC 252 (335)
..|+|+.|...|.|=
T Consensus 22 ~~C~CG~y~~~~kp~ 36 (42)
T 2l0z_A 22 GGCRCGKYPNLKKPT 36 (42)
T ss_dssp SSBTTTTBCCCCCCC
T ss_pred ceeccccccCCCCcc
Confidence 689999999988873
No 2
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=43.99 E-value=1.9 Score=21.42 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=8.4
Q ss_pred cccccccCCCCC
Q 043364 324 SKVTTLNDIFPY 335 (335)
Q Consensus 324 ~~~~~~~~~~~~ 335 (335)
+--|+|+|+|.|
T Consensus 5 fntttmddvyny 16 (22)
T 3e1k_B 5 FNTTTMDDVYNY 16 (26)
T ss_pred cccccHHHHHHH
Confidence 345788888765
No 3
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=38.96 E-value=1.8 Score=22.37 Aligned_cols=11 Identities=36% Similarity=0.927 Sum_probs=7.9
Q ss_pred ccccccCCCCC
Q 043364 325 KVTTLNDIFPY 335 (335)
Q Consensus 325 ~~~~~~~~~~~ 335 (335)
--|+|||||-|
T Consensus 4 NTTTMDDvyNy 14 (26)
T 3bts_E 4 NTTTMDDVYNY 14 (26)
T ss_pred ccccHHHHHHH
Confidence 35788888854
No 4
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=33.74 E-value=35 Score=17.74 Aligned_cols=12 Identities=0% Similarity=0.030 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCC
Q 043364 308 MKNSTNSSASNE 319 (335)
Q Consensus 308 ~~~r~~~~~~~~ 319 (335)
..+||+|+..+-
T Consensus 3 tpKrpRgRpkGS 14 (26)
T 2ezd_A 3 TPKRPRGRPKGS 14 (26)
T ss_dssp SCCCCSSCCTTC
T ss_pred CCcCCCCCcCcc
Confidence 346777665543
No 5
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=19.28 E-value=69 Score=23.87 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=25.7
Q ss_pred CCceEEEcCCchh---HHHHHHhhCCccchhhhHH
Q 043364 41 GEGLCILADGDNG---VDEAVEEFLPYGVYRQCCF 72 (335)
Q Consensus 41 ~~~~~iisD~~~~---l~~Ai~~vfP~a~h~~C~~ 72 (335)
...+.|+||.|.+ |..-+.+.+|++.|.+-.+
T Consensus 50 ~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r 84 (119)
T 2fcj_A 50 GYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDR 84 (119)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCT
T ss_pred CCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccC
Confidence 5689999999964 6777889999998877443
No 6
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=18.58 E-value=99 Score=19.82 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.7
Q ss_pred chhHHHHHHhhCCccchhhhHHHHHHh
Q 043364 51 DNGVDEAVEEFLPYGVYRQCCFSLYGR 77 (335)
Q Consensus 51 ~~~l~~Ai~~vfP~a~h~~C~~Hi~~n 77 (335)
-.+|..-|.++||+.+...=.|.+.++
T Consensus 17 l~~Mve~V~~mFPqv~~~~I~~DL~rT 43 (58)
T 4g3o_A 17 LNAMAHQIQEMFPQVPYHLVLQDLQLT 43 (58)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 346888999999999888766666554
No 7
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=17.46 E-value=1.9e+02 Score=26.94 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=41.0
Q ss_pred EEEEEEEeec--cccccHH-HHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCccchhhhHHHHHHhhhh
Q 043364 10 LPIAFCEVQE--ENLDSWA-FFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVV 80 (335)
Q Consensus 10 ~~lafa~~~~--E~~~~w~-wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~ 80 (335)
.+|+|--++. .+.++.. .+.+.+. ..++....-+.++||....+..|+... .|..|.-|++.-+.+
T Consensus 132 ~~L~~~~~~~~~~t~~~i~~~i~~~l~-~~~l~~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~ 200 (534)
T 2bw3_A 132 LILGLKSLDFERSTAENIYKKLKAIFS-QFNVEDLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLE 200 (534)
T ss_dssp EEEEEEEECGGGCSHHHHHHHHHHHHH-TTTCCCCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHH
T ss_pred EEEeEeecCCCCCCHHHHHHHHHHHHH-HcCCCcccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHH
Confidence 3455655553 3444433 3333442 234433336679999999888887643 588999999987754
No 8
>1hyk_A Agouti related protein; cysteine rich, disulfide bond, ICK, inhibitor cystine knot, melanocortin antagonists, AGRP, endogenous antagonist; NMR {Synthetic} SCOP: g.3.5.1 PDB: 1mr0_A
Probab=17.20 E-value=40 Score=20.35 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=12.6
Q ss_pred ceecccCcccCCCcchh
Q 043364 238 MTCSCRLWQLSGIPCEH 254 (335)
Q Consensus 238 ~~CsC~~~~~~giPC~H 254 (335)
.-|.|++....-.||+|
T Consensus 29 tiCyCR~l~~~~~~~~~ 45 (46)
T 1hyk_A 29 AFCYCRKLGTAMNPCSR 45 (46)
T ss_dssp SCEEEECCCCSSSCSSC
T ss_pred heeeeeecccccCccCC
Confidence 35777777777788876
No 9
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.43 E-value=1.6e+02 Score=18.78 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=19.9
Q ss_pred CchhHHHHHHhhCCccchhhhHHHHHH
Q 043364 50 GDNGVDEAVEEFLPYGVYRQCCFSLYG 76 (335)
Q Consensus 50 ~~~~l~~Ai~~vfP~a~h~~C~~Hi~~ 76 (335)
+-.+|..-|.++||+.....=.|.+.+
T Consensus 12 q~~~mv~~V~~mfP~vp~~~I~~DL~~ 38 (58)
T 2ejs_A 12 QLNAMAHQIQEMFPQVPYHLVLQDLQL 38 (58)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345788889999999887765555544
No 10
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=13.02 E-value=63 Score=17.60 Aligned_cols=8 Identities=38% Similarity=0.310 Sum_probs=6.2
Q ss_pred cCCCcchh
Q 043364 247 LSGIPCEH 254 (335)
Q Consensus 247 ~~giPC~H 254 (335)
..||||+-
T Consensus 12 rf~IPccp 19 (32)
T 2esy_A 12 RFGIPFFP 19 (32)
T ss_dssp SSSCCSTH
T ss_pred cccCcccc
Confidence 57899964
Done!