Query 043364
Match_columns 335
No_of_seqs 186 out of 1327
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 06:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043364.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043364hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bw3a2 c.55.3.12 (A:163-609) 24.8 61 0.0045 26.7 6.4 67 10-80 45-113 (447)
2 d1no1a_ a.179.1.1 (A:) Repliso 19.3 71 0.0052 18.4 3.7 12 53-64 8-19 (67)
3 d2ch5a2 c.55.1.5 (A:1-117) N-a 17.4 48 0.0035 22.4 3.2 53 3-57 62-115 (117)
4 d1ob1c2 g.3.11.4 (C:46-96) Mer 14.7 22 0.0016 20.4 0.6 18 237-254 28-49 (51)
5 d1k36a_ g.3.11.1 (A:) Epiregul 12.0 16 0.0012 20.8 -0.7 33 222-256 12-45 (46)
6 d1xdtr_ g.3.11.1 (R:) Heparin- 8.8 9.1 0.00066 21.4 -2.5 31 222-254 8-39 (41)
7 d1g1ta2 g.3.11.1 (A:119-157) E 8.7 60 0.0044 17.3 1.1 27 229-256 13-39 (39)
8 d1b8aa2 d.104.1.1 (A:104-438) 8.2 31 0.0022 28.4 -0.6 49 20-70 281-334 (335)
9 d1pdoa_ c.54.1.1 (A:) IIA doma 7.6 1.5E+02 0.011 20.1 3.2 43 11-55 30-72 (129)
10 d1oqya1 a.5.2.1 (A:160-200) DN 7.5 1.3E+02 0.0091 16.2 2.1 24 247-270 13-36 (41)
No 1
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}
Probab=24.82 E-value=61 Score=26.68 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=43.9
Q ss_pred EEEEEEEeecc--ccccHHHHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCccchhhhHHHHHHhhhh
Q 043364 10 LPIAFCEVQEE--NLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVV 80 (335)
Q Consensus 10 ~~lafa~~~~E--~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~ 80 (335)
..|||.-++.+ +.++..-.+...-+..++....-..+.+|+...|..+ +++..+..|..|.+.-+.+
T Consensus 45 ~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~~~~~D~a~n~~~~----~~~~~~i~C~aH~Lnl~v~ 113 (447)
T d2bw3a2 45 LILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKS----LANNIRINCSSHLLSNVLE 113 (447)
T ss_dssp EEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHH----TTTSEEEECHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEEEEEcCCcHhhHHH----hhccccccchhhhhhhhhH
Confidence 45566546543 4466544444332345566666788999998777654 6778889999998876543
No 2
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=19.33 E-value=71 Score=18.37 Aligned_cols=12 Identities=42% Similarity=0.542 Sum_probs=8.1
Q ss_pred hHHHHHHhhCCc
Q 043364 53 GVDEAVEEFLPY 64 (335)
Q Consensus 53 ~l~~Ai~~vfP~ 64 (335)
.|..|+++.+|+
T Consensus 8 qilkavsefypg 19 (67)
T d1no1a_ 8 QILKAVSEFYPG 19 (67)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHHHCCC
Confidence 356777777775
No 3
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.41 E-value=48 Score=22.44 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=36.1
Q ss_pred ccCCCCeEEEEEEEeeccccccHHHHHHHhhhcccccC-CCceEEEcCCchhHHHH
Q 043364 3 RDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFER-GEGLCILADGDNGVDEA 57 (335)
Q Consensus 3 ~D~~~~~~~lafa~~~~E~~~~w~wfl~~l~~~~~~~~-~~~~~iisD~~~~l~~A 57 (335)
++....+..+++++..-++.+.-..+.+.|+ ..++. ...+.|.+|-..++..|
T Consensus 62 ~~~~~~i~~i~~GlAG~~~~~~~~~l~~~l~--~~~~~~~~~v~v~nDa~~Al~~a 115 (117)
T d2ch5a2 62 VDPLVPLRSLGLSLSGGDQEDAGRILIEELR--DRFPYLSESYLITTDAAGSIATA 115 (117)
T ss_dssp CCTTCCBSEEEEEETTTTCHHHHHHHHHHHH--HHCTTSBSCEEEEEHHHHHHHHH
T ss_pred CCCCccccEEEEEeeccCcchhHHHHHHHHH--HHCCCCCceEEEeccHHHHHhhc
Confidence 3444566778889988888888888888884 34433 24677888876665543
No 4
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=14.70 E-value=22 Score=20.44 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=14.0
Q ss_pred cceecccCccc----CCCcchh
Q 043364 237 LMTCSCRLWQL----SGIPCEH 254 (335)
Q Consensus 237 ~~~CsC~~~~~----~giPC~H 254 (335)
...|+|.+... .|+-|+|
T Consensus 28 kIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 28 KITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp CCEEEECSTTCCEEGGGTEECC
T ss_pred eEEEEecCCCCCcccceEEeec
Confidence 57899988764 5888887
No 5
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.02 E-value=16 Score=20.84 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=24.8
Q ss_pred ce-EEeCCeEEEEEcccceecccCcccCCCcchhHH
Q 043364 222 SF-VSRHGFVFEVNRELMTCSCRLWQLSGIPCEHAC 256 (335)
Q Consensus 222 ~f-V~~~~~~~~V~l~~~~CsC~~~~~~giPC~H~l 256 (335)
.| +. |+-.+..+++..+|.|. ...+|--|.|++
T Consensus 12 ~yC~n-G~C~~~~~~~~~~C~C~-~gY~G~RCe~~~ 45 (46)
T d1k36a_ 12 GYCLH-GQCIYLVDMSQNYCRCE-VGYTGVRCEHFF 45 (46)
T ss_dssp SSCSS-EEEEEETTTTEEEEEEC-TTCSSTTSCCCC
T ss_pred CcCcC-CEEEEeCCCCccEeECC-CCceecCceeee
Confidence 45 54 55667778888899996 567899998864
No 6
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.83 E-value=9.1 Score=21.40 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=23.3
Q ss_pred ce-EEeCCeEEEEEcccceecccCcccCCCcchh
Q 043364 222 SF-VSRHGFVFEVNRELMTCSCRLWQLSGIPCEH 254 (335)
Q Consensus 222 ~f-V~~~~~~~~V~l~~~~CsC~~~~~~giPC~H 254 (335)
.| |. |.-.|.++++..+|.|. -..+|.-|.|
T Consensus 8 ~yCih-G~C~~i~~l~~~~C~C~-~gY~G~RCq~ 39 (41)
T d1xdtr_ 8 DFCIH-GECKYVKELRAPSCICH-PGYHGERCHG 39 (41)
T ss_dssp TCCSS-EEECCBGGGTBCCEEEC-TTEESTTCCE
T ss_pred CEeEC-cEEeecCcCCCceeECC-CCCeecCccc
Confidence 46 64 66778889999999994 5667777766
No 7
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.70 E-value=60 Score=17.35 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=18.8
Q ss_pred eEEEEEcccceecccCcccCCCcchhHH
Q 043364 229 FVFEVNRELMTCSCRLWQLSGIPCEHAC 256 (335)
Q Consensus 229 ~~~~V~l~~~~CsC~~~~~~giPC~H~l 256 (335)
.+.+...+..+|.|. ....|--|.++|
T Consensus 13 g~C~~~~~~~~C~C~-~g~~G~~Ce~~v 39 (39)
T d1g1ta2 13 GECVETINNYTCKCD-PGFSGLKCEQIV 39 (39)
T ss_dssp EEEEEETTEEEEEEC-TTEESTTSCEEC
T ss_pred cEEECCCCCEEEeCC-CCCcCcCcCccC
Confidence 344445566799995 778888887653
No 8
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=8.18 E-value=31 Score=28.41 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=35.1
Q ss_pred cccccHHHHHHHhhhcccccCCCceEEEcCCchhHHH---HHHhh--CCccchhhh
Q 043364 20 ENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDE---AVEEF--LPYGVYRQC 70 (335)
Q Consensus 20 E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~---Ai~~v--fP~a~h~~C 70 (335)
.+.+.+.||++.+ ..+++...++.+=-||-..+.. .|.+| ||...++++
T Consensus 281 ~~~e~~e~yl~al--~~G~Pp~~G~glGiDRLvm~l~~~~~IrdVi~FPr~~~~~~ 334 (335)
T d1b8aa2 281 LNPESFEFYLKAF--RYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 334 (335)
T ss_dssp CCGGGGHHHHHTT--SBCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred CCHHHHHHHHHHh--hcCCCCCceeeeHHHHHHHHHhCCCcHHheEcCCCCCCCCC
Confidence 3456789999999 7788877788888888665543 34454 787777653
No 9
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=7.61 E-value=1.5e+02 Score=20.12 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=30.8
Q ss_pred EEEEEEeeccccccHHHHHHHhhhcccccCCCceEEEcCCchhHH
Q 043364 11 PIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVD 55 (335)
Q Consensus 11 ~lafa~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~ 55 (335)
..++.+-.+++.+.+.--++.. ...+....++.|+||---|-.
T Consensus 30 i~~i~~~~~~~~~~~~~~~~~~--i~~~~~~~~vliltDl~GGsp 72 (129)
T d1pdoa_ 30 VGWIDFVPGENAETLIEKYNAQ--LAKLDTTKGVLFLVDTWGGSP 72 (129)
T ss_dssp EEEECBCTTCCHHHHHHHHHHH--HTTSCCTTCEEEEESSTTSHH
T ss_pred eEEEEccCCCCHHHHHHHHHHH--HHhcCCCCCEEEEEeccccch
Confidence 4466677888888777777666 445556678999999766654
No 10
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.46 E-value=1.3e+02 Score=16.23 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=19.3
Q ss_pred cCCCcchhHHHHHHHhCCCccccc
Q 043364 247 LSGIPCEHACRCIHSWGDKLDKYV 270 (335)
Q Consensus 247 ~~giPC~H~lav~~~~~~~~~~~v 270 (335)
-+|++=.+++.+|...+-+++.-+
T Consensus 13 ~MGF~~~~a~~AL~~~~~N~e~A~ 36 (41)
T d1oqya1 13 SMGYERERVVAALRASYNNPHRAV 36 (41)
T ss_dssp TTTCCSHHHHHHHHHSCSSTTHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHH
Confidence 489999999999999987766433
Done!