BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043366
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FBU|A Chain A, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
pdb|3FBU|B Chain B, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
Length = 168
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 12 SEDGINFFKNKVINNHPWFKAICLG-NKPIGAILVTPNSGDCNKCRAILGYVVASKYWGK 70
ED NF + N F I +G N +G I+ G+ +G+V KY+ K
Sbjct: 41 EEDTRNFVNKNMGENAKNFPVILIGENILVGHIVFHKYFGEHT---YEIGWVFNPKYFNK 97
Query: 71 GIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKA 130
G A+ A + F E L R+ AT +N S +V++K G +REG +K I +
Sbjct: 98 GYASEAAQATLKYGFKEMK-LHRIIATCQPENTPSYRVMEKIGMRREGYFKKCIPHGNEW 156
Query: 131 TDVVMFSLLSTD 142
D +++L +
Sbjct: 157 WDEYYYAILEEE 168
>pdb|3IGR|A Chain A, The Crystal Structure Of Ribosomal-protein-s5-alanine
Acetyltransferase From Vibrio Fischeri To 2.0a
pdb|3IGR|B Chain B, The Crystal Structure Of Ribosomal-protein-s5-alanine
Acetyltransferase From Vibrio Fischeri To 2.0a
Length = 184
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 59 LGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118
+GY + S+Y GKGI RAV + F +L R+ A N S KVL GF +EG
Sbjct: 99 VGYSLDSEYQGKGIXRRAVNVTIDWXFKA-QNLHRIXAAYIPRNEKSAKVLAALGFVKEG 157
Query: 119 VLRKYITLKGKATDVVMFSLLSTD 142
+KY+ + G D ++ S ++ D
Sbjct: 158 EAKKYLYINGAWEDHILTSKINDD 181
>pdb|1NSL|A Chain A, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|B Chain B, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|C Chain C, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|D Chain D, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|E Chain E, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|F Chain F, Crystal Structure Of Probable Acetyltransferase
Length = 184
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 56 RAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115
+A +GY +A ++ GKGI T A + + F+E L R+ V N S+ V ++ GF
Sbjct: 94 KAEIGYWIAKEFEGKGIITAACRKLITYAFEEL-ELNRVAICAAVGNEKSRAVPERIGFL 152
Query: 116 REGVLRKYITLKGKATDVVMFSLLSTD 142
EG R + + G D+V +SLL +
Sbjct: 153 EEGKARDGLYVNGXHHDLVYYSLLKRE 179
>pdb|3TCV|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase
From Brucella Melitensis
pdb|3TCV|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase
From Brucella Melitensis
Length = 246
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 27 HPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL------GYV-VASKYWGKGIATRAVKM 79
PW + P+ ++ SG +A++ G + + S YWG I+ R
Sbjct: 86 EPWLDKASKSDDPLFFAVIDKASGKVAGRQALMRIDPANGVIEIGSIYWGPLISRRPAAT 145
Query: 80 VTGIIFDEWPH----LQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVM 135
+F ++ +R E +N S++ ++ GF+ EG+ R+++ +KG+ D
Sbjct: 146 EAQFLFMQYVFDVLGYRRYEWECHNENGPSRRAAERFGFRFEGIFRQHMVVKGRNRDTAW 205
Query: 136 FSLLSTD 142
FS+L ++
Sbjct: 206 FSVLDSE 212
>pdb|2VI7|A Chain A, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|B Chain B, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|C Chain C, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
Length = 177
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 59 LGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118
+G VA + GKG+ +R + + I D W +L+R+E TV DN + + +K GF+ EG
Sbjct: 89 IGMGVAVAWQGKGVGSRLLGELLDIA-DNWMNLRRVELTVYTDNAPALALYRKFGFETEG 147
Query: 119 VLRKYITLKGKATDVVMFSLL 139
+R Y G+ DV + L
Sbjct: 148 EMRDYAVRDGRFVDVYSMARL 168
>pdb|2Z10|A Chain A, Crystal Structure Of Putative Acetyltransferase
pdb|2Z11|A Chain A, Crystal Structure Of Putative Acetyltransferase
Length = 194
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 32 AICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHL 91
AI G + G I V + K LG ++ +WG A ++ F+
Sbjct: 67 AILFGKEVAGRISVIAPEPEHAKLE--LGTMLFKPFWGSPANKEAKXLLLRHAFEVL-RA 123
Query: 92 QRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLK-GKATDVVMFSLLSTD 142
+R++ VD+ N SQ+ L+ G REGVLRK L G D V++S+L +
Sbjct: 124 ERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEE 175
>pdb|2ZXV|A Chain A, Crystal Structure Of Putative Acetyltransferase From T.
Thermophilus Hb8
pdb|2ZXV|B Chain B, Crystal Structure Of Putative Acetyltransferase From T.
Thermophilus Hb8
pdb|2ZXV|C Chain C, Crystal Structure Of Putative Acetyltransferase From T.
Thermophilus Hb8
pdb|2ZXV|D Chain D, Crystal Structure Of Putative Acetyltransferase From T.
Thermophilus Hb8
Length = 194
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 32 AICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHL 91
AI G + G I V + K LG ++ +WG A ++ F+
Sbjct: 67 AILFGKEVAGRISVIAPEPEHAKLE--LGTMLFKPFWGSPANKEAKYLLLRHAFEVL-RA 123
Query: 92 QRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLK-GKATDVVMFSLLSTD 142
+R++ VD+ N SQ+ L+ G REGVLRK L G D V++S+L +
Sbjct: 124 ERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEE 175
>pdb|2Z0Z|A Chain A, Crystal Structure Of Putative Acetyltransferase
Length = 194
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 32 AICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHL 91
AI G + G I V + K LG ++ +WG A ++ F+
Sbjct: 67 AILFGKEVAGRISVIAPEPEHAKLE--LGTMLFKPFWGSPANKEAKYLLLRHAFEVL-RA 123
Query: 92 QRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLK-GKATDVVMFSLLSTD 142
+R++ VD+ N SQ+ L+ G REGVLRK L G D V++S+L +
Sbjct: 124 ERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEE 175
>pdb|2GE3|A Chain A, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|B Chain B, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|C Chain C, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|D Chain D, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
Length = 170
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 18 FFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAV 77
F + + N+HP F AI G+ IG + LG + Y KG+ R
Sbjct: 49 FVLDXIENDHPQFVAIADGDV-IGWCDIRRQDRATRAHCGTLGXGILPAYRNKGLGARLX 107
Query: 78 KMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFS 137
+ + L R+E +V DN + + +K GF EG R +++ G D + +
Sbjct: 108 RRTLDAAHEFG--LHRIELSVHADNARAIALYEKIGFAHEGRARDAVSIDGHYIDSLNXA 165
Query: 138 LL 139
++
Sbjct: 166 II 167
>pdb|3R95|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Acetyl-Coa
pdb|3R95|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Acetyl-Coa
pdb|3R96|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Acetyl-Coa And
Amp
pdb|3R96|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Acetyl-Coa And
Amp
pdb|3R9E|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Aspartyl Sulfamoyl Adenosine (Dsa)
pdb|3R9E|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Aspartyl Sulfamoyl Adenosine (Dsa)
pdb|3R9F|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Glutamyl Sulfamoyl Adenosine (Esa)
pdb|3R9F|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Glutamyl Sulfamoyl Adenosine (Esa)
pdb|3R9G|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Processed Microcin C7 Antibiotic
pdb|3R9G|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Processed Microcin C7 Antibiotic
Length = 188
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 13 EDGINFFKNKVINNHPWFKAICLGNKPIGAI--LVTPNSGDCNKCRAILGYVVASKYWGK 70
D ++F + +I+N KA+ L K I +V+ N D A +GY + + + GK
Sbjct: 60 SDSVSFIEQSMIDNQNE-KALILFIKYKTKIAGVVSFNIIDHANKTAYIGYWLGANFQGK 118
Query: 71 GIATRAV-KMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGK 129
GI T A+ K++ + + ++R VDN S + GF EGVL+K L G
Sbjct: 119 GIVTNAINKLIQE--YGDSGVIKRFVIKCIVDNKKSNATALRCGFTLEGVLQKAEILNGV 176
Query: 130 ATDVVMFS 137
+ D ++S
Sbjct: 177 SYDQNIYS 184
>pdb|1V0C|A Chain A, Structure Of Aac(6')-Ib In Complex With Kanamycin C And
Acetylcoa.
pdb|2BUE|A Chain A, Structure Of Aac(6')-Ib In Complex With Ribostamycin And
Coenzyme A.
pdb|2VQY|A Chain A, Structure Of Aac(6')-Ib In Complex With Parmomycin And
Acetylcoa
Length = 202
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 55 CRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGF 114
R I + + GKG+ T+ V+ + ++F++ P + +++ NL + + +KAGF
Sbjct: 114 VRGIDQLLANASQLGKGLGTKLVRALVELLFND-PEVTKIQTDPSPSNLRAIRCYEKAGF 172
Query: 115 KREGVL 120
+R+G +
Sbjct: 173 ERQGTV 178
>pdb|2PRB|A Chain A, Crystal Structure Of Aminoglycoside Acetyltransferase
Aac(6')-Ib In Complex Whith Coenzyme A
pdb|2QIR|A Chain A, Crystal Structure Of Aminoglycoside Acetyltransferase
Aac(6')-Ib In Complex Whith Coenzyme A And Kanamycin
Length = 196
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 55 CRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGF 114
R I + + GKG+ T+ V+ + ++F++ P + +++ NL + + +KAGF
Sbjct: 101 VRGIDQLLANASQLGKGLGTKLVRALVELLFND-PEVTKIQTDPSPSNLRAIRCYEKAGF 159
Query: 115 KREGVL 120
+R+G +
Sbjct: 160 ERQGTV 165
>pdb|2PR8|A Chain A, Crystal Structure Of Aminoglycoside N-Acetyltransferase
Aac(6')-Ib11
pdb|2PR8|B Chain B, Crystal Structure Of Aminoglycoside N-Acetyltransferase
Aac(6')-Ib11
Length = 196
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 69 GKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVL 120
GKG+ T+ V+ + ++F++ P + +++ NL + + +KAGF+R+G +
Sbjct: 115 GKGLGTKLVRALVELLFND-PEVTKIQTDPSPSNLRAIRCYEKAGFERQGTV 165
>pdb|1YRE|A Chain A, Hypothetical Protein Pa3270 From Pseudomonas Aeruginosa In
Complex With Coa
pdb|1YRE|B Chain B, Hypothetical Protein Pa3270 From Pseudomonas Aeruginosa In
Complex With Coa
pdb|1YRE|C Chain C, Hypothetical Protein Pa3270 From Pseudomonas Aeruginosa In
Complex With Coa
pdb|1YRE|D Chain D, Hypothetical Protein Pa3270 From Pseudomonas Aeruginosa In
Complex With Coa
Length = 197
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 93 RLEATVDVDNLASQKVLQKAGFKREGVLRKYITLK-GKATDVVMFSLLSTDHK 144
R++ + NL +Q + K G +REGVLR + L G+ D ++S+ TDH+
Sbjct: 133 RVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSI--TDHE 183
>pdb|3TTH|A Chain A, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|B Chain B, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|C Chain C, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|D Chain D, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|E Chain E, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|F Chain F, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|G Chain G, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|H Chain H, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|I Chain I, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|J Chain J, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|K Chain K, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|L Chain L, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
Length = 170
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 35 LGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRL 94
L + +G + +T +C +++ GKG AT A + F +L ++
Sbjct: 65 LKDNKVGLVELTEIDFIHRRCE--FAIIISPGEEGKGYATEATDLTVEYAFS-ILNLHKI 121
Query: 95 EATVDVDNLASQKVLQKAGFKREGVLRKYITLKGK 129
VD DN A+ + +K+GF EG L KG+
Sbjct: 122 YLLVDEDNPAALHIYRKSGFAEEGKLVDEYYSKGR 156
>pdb|3OWC|A Chain A, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
pdb|3OWC|B Chain B, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
Length = 188
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 62 VVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121
V+A G+G+ ++ + F + ++R+E V N A++ + ++AGF+ EG+ R
Sbjct: 100 VLAPSARGQGLGLPXLEALLAEAFAD-ADIERVELNVYDWNAAARHLYRRAGFREEGLRR 158
Query: 122 KYITLKGKATDVVMFSLLSTD 142
+ + +VV+ LL +
Sbjct: 159 SATRVGRERWNVVLXGLLRQE 179
>pdb|3EG7|A Chain A, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|B Chain B, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|C Chain C, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|D Chain D, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|E Chain E, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|F Chain F, Spermidine N1-Acetyltransferase From Vibrio Cholerae
Length = 176
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 62 VVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121
++A ++ GKG A + F +L ++ V V+N + + ++ GF EG L
Sbjct: 91 IIAPEHQGKGFARTLINRALDYSFT-ILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLV 149
Query: 122 KYITLKGKATDVVMFSLLST 141
+ + G+ DV +L +
Sbjct: 150 EEFFINGRYQDVKRXYILQS 169
>pdb|1KZW|A Chain A, Solution Structure Of Human Intestinal Fatty Acid Binding
Protein
Length = 131
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 36 GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAV 77
GNK IG T N + N R I+G + Y +G+ + +
Sbjct: 86 GNKLIGKFKRTDNGNELNTVREIIGDELVQTYVYEGVEAKRI 127
>pdb|1KZX|A Chain A, Solution Structure Of Human Intestinal Fatty Acid Binding
Protein With A Naturally-Occurring Single Amino Acid
Substitution (A54t)
Length = 131
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 36 GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAV 77
GNK IG T N + N R I+G + Y +G+ + +
Sbjct: 86 GNKLIGKFKRTDNGNELNTVREIIGDELVQTYVYEGVEAKRI 127
>pdb|3IFB|A Chain A, Nmr Study Of Human Intestinal Fatty Acid Binding Protein
pdb|3AKM|A Chain A, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|B Chain B, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|C Chain C, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|D Chain D, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
Length = 131
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 36 GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAV 77
GNK IG T N + N R I+G + Y +G+ + +
Sbjct: 86 GNKLIGKFKRTDNGNELNTVREIIGDELVQTYVYEGVEAKRI 127
>pdb|3IWG|A Chain A, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea.
pdb|3IWG|B Chain B, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea
Length = 276
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 57 AILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEA--TVDVDNLASQKVLQKAGF 114
A LG +VA G+GIA + + +T + Q L + + + +N+A+QK + AGF
Sbjct: 208 ADLGXIVAQSNRGQGIAKKVLTFLT-----KHAATQGLTSICSTESNNVAAQKAIAHAGF 262
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc), Beta Subunit
pdb|3U9S|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|D Chain D, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|F Chain F, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|H Chain H, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|J Chain J, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|L Chain L, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 555
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 58 ILGYVVASKYWGKGIATRAVKMVTGI 83
I G++V KY GIA K+VT +
Sbjct: 396 ITGFMVGQKYEAGGIAKHGAKLVTAV 421
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNL 103
Y + + R + V +FD+WP L + A D ++
Sbjct: 281 YPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDV 317
>pdb|3QB8|A Chain A, Paramecium Chlorella Bursaria Virus1 Putative Orf A654l Is
A Polyamine Acetyltransferase
pdb|3QB8|B Chain B, Paramecium Chlorella Bursaria Virus1 Putative Orf A654l Is
A Polyamine Acetyltransferase
Length = 197
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 53 NKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKA 112
+KC + + + S+ GKG+AT+ +K I + H + D N+ SQ + +K
Sbjct: 107 DKCLYV--FAIGSEVTGKGLATKLLKKT---IEESSSHGFKY-IYGDCTNIISQNMFEKH 160
Query: 113 GFKREGVLR 121
GF+ G ++
Sbjct: 161 GFETVGSVK 169
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 38 KPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVK 78
KP G+I+ TP + + + +L Y +++ KG+A A+K
Sbjct: 749 KPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALK 789
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 38 KPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVK 78
KP G+I+ TP + + + +L Y +++ KG+A A+K
Sbjct: 749 KPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALK 789
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 7 FCTWESEDGINFFKNKVINNHPWFKAICLGNKPIGAI 43
+ W+ G +++ N+ +KA C+GN A+
Sbjct: 136 YIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAV 172
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 7 FCTWESEDGINFFKNKVINNHPWFKAICLGNKPIGAI 43
+ W+ G +++ N+ +KA C+GN A+
Sbjct: 136 YIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAV 172
>pdb|3LD2|A Chain A, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|B Chain B, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|C Chain C, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|D Chain D, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
Length = 197
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 59 LGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118
G VA K KGI V++ + ++ Q++ V N + +K GF E
Sbjct: 113 FGIAVAEKERRKGIGRALVQIFLNEVKSDY---QKVLIHVLSSNQEAVLFYKKLGFDLEA 169
Query: 119 VLRKYITLKGKATDVVMFS 137
L K LKG+ D +++S
Sbjct: 170 RLTKQFFLKGQYVDDLIYS 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,202,726
Number of Sequences: 62578
Number of extensions: 154543
Number of successful extensions: 378
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 32
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)