BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043366
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P05332|YP20_BACLI Uncharacterized N-acetyltransferase p20 OS=Bacillus licheniformis
GN=p20 PE=4 SV=1
Length = 178
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 48 NSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQK 107
N D RA +GY + +WGKG A+ AV+ + F +L R+EA V+ +N S K
Sbjct: 82 NMIDQENGRAEIGYDLGRNHWGKGFASEAVQKLIDYGFTSL-NLNRIEAKVEPENTPSIK 140
Query: 108 VLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTDH 143
+L F++EG+LR Y KG+ DV MFSLL ++
Sbjct: 141 LLNSLSFQKEGLLRDYEKAKGRLIDVYMFSLLKREY 176
>sp|O31633|YJCK_BACSU Putative ribosomal-protein-alanine acetyltransferase OS=Bacillus
subtilis (strain 168) GN=yjcK PE=3 SV=1
Length = 181
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 57 AILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKR 116
A +GY + + GKGI T AV++V F E L R+EA V NL S +VL+KAGF +
Sbjct: 94 AFIGYFLDKAHNGKGIMTEAVRLVVDYAFHELK-LHRIEAGVMPRNLGSMRVLEKAGFHK 152
Query: 117 EGVLRKYITLKGKATDVVMFSLLSTD 142
EG+ RK + + G D + ++L+ D
Sbjct: 153 EGIARKNVKINGVWEDHQVLAILNPD 178
>sp|O34569|YOAA_BACSU Uncharacterized N-acetyltransferase YoaA OS=Bacillus subtilis
(strain 168) GN=yoaA PE=3 SV=2
Length = 177
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 56 RAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115
RA +GY + ++W G A+ + V F L R+ A V DN AS ++L K GF+
Sbjct: 91 RAEIGYEIIPEHWRNGFASEVISKVVSYGFSALG-LSRIGAVVFTDNEASNRLLLKMGFQ 149
Query: 116 REGVLRKYITLKGKATDVVMFSLL 139
+EGVLR+Y+ G D ++S++
Sbjct: 150 KEGVLRQYMYQNGTPYDTNVYSIV 173
>sp|O31995|YOKL_BACSU SPBc2 prophage-derived uncharacterized N-acetyltransferase YokL
OS=Bacillus subtilis (strain 168) GN=yokL PE=3 SV=1
Length = 177
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 30 FKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVA--SKYWGKGIATRAVKMVTGIIFDE 87
F A+ N +G I + DC++ GY +A Y GKG A + MV F E
Sbjct: 62 FIAVESDNNIVGMI----ETFDCDRKNGTFGYYLAVFEPYRGKGFAKEMILMVLRFFFLE 117
Query: 88 WPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTDHKI 145
+ Q++ TV N S ++ +K GF +EG LRK I KG D + F + + ++
Sbjct: 118 LAY-QKVNTTVYSFNNPSIRLHEKLGFMKEGQLRKIIFTKGAYYDGICFGMTREEFEL 174
>sp|P96579|YDAF_BACSU Putative ribosomal N-acetyltransferase YdaF OS=Bacillus subtilis
(strain 168) GN=ydaF PE=1 SV=1
Length = 183
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 56 RAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115
+A +GY +A ++ GKGI T A + + F+E L R+ V N S+ V ++ GF
Sbjct: 93 KAEIGYWIAKEFEGKGIITAACRKLITYAFEEL-ELNRVAICAAVGNEKSRAVPERIGFL 151
Query: 116 REGVLRKYITLKGKATDVVMFSLLSTD 142
EG R + + G D+V +SLL +
Sbjct: 152 EEGKARDGLYVNGMHHDLVYYSLLKRE 178
>sp|Q9I2H6|RIMJ_PSEAE Ribosomal-protein-alanine acetyltransferase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rimJ PE=3 SV=1
Length = 189
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 59 LGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118
LG+ +A+ G+G+ RA+++ F++ L R+ A+ N S+++L+ GF++EG
Sbjct: 106 LGFSLAAAAQGRGLMARALRVANRYCFEQL-GLHRIMASHLPRNARSERLLESLGFEKEG 164
Query: 119 VLRKYITLKGKATDVVMFSLLST 141
R Y+ + G D V+ +L+
Sbjct: 165 YARAYLKIAGVWEDHVLRALVDA 187
>sp|P46854|YHHY_ECOLI Uncharacterized N-acetyltransferase YhhY OS=Escherichia coli
(strain K12) GN=yhhY PE=3 SV=1
Length = 162
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 34 CLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQR 93
C+ +G + + A G V S++ +G+A+ ++ + + D W + R
Sbjct: 57 CIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMREMIEMC-DNWLRVDR 115
Query: 94 LEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFS 137
+E TV VDN + KV +K GF+ EG +KY G+ D +
Sbjct: 116 IELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMA 159
>sp|P40586|YIW2_YEAST Uncharacterized protein YIR042C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YIR042C PE=4 SV=1
Length = 236
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 59 LGYVVASKYWGKGI-ATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKRE 117
+GYVV S K I AT A ++ +FD+ + +R E D N S++ + GFK E
Sbjct: 118 VGYVVFSPELQKTIIATEAQFLLMKYVFDDLQY-RRYEWKCDSLNGPSRRAAMRLGFKYE 176
Query: 118 GVLRKYITLKGKATDVVMFSLLSTD 142
G R+ + KG+ D FS++ +
Sbjct: 177 GTFRQVVVYKGRTRDTQWFSIIDKE 201
>sp|P0A950|RIMJ_SHIFL Ribosomal-protein-alanine acetyltransferase OS=Shigella flexneri
GN=rimJ PE=3 SV=1
Length = 194
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 50 GDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVL 109
G + C LGY + K+ GKG+ A+ + H+ R+ A N S +L
Sbjct: 100 GSFHAC--YLGYSIGQKWQGKGLMFEALTAAIRYM-QRTQHIHRIMANYMPHNKRSGDLL 156
Query: 110 QKAGFKREGVLRKYITLKGKATDVVMFSLLSTD 142
+ GF++EG + Y+ + G+ D V+ +L + D
Sbjct: 157 ARLGFEKEGYAKDYLLIDGQWRDHVLTALTTPD 189
>sp|P0A948|RIMJ_ECOLI Ribosomal-protein-alanine acetyltransferase OS=Escherichia coli
(strain K12) GN=rimJ PE=3 SV=1
Length = 194
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 50 GDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVL 109
G + C LGY + K+ GKG+ A+ + H+ R+ A N S +L
Sbjct: 100 GSFHAC--YLGYSIGQKWQGKGLMFEALTAAIRYM-QRTQHIHRIMANYMPHNKRSGDLL 156
Query: 110 QKAGFKREGVLRKYITLKGKATDVVMFSLLSTD 142
+ GF++EG + Y+ + G+ D V+ +L + D
Sbjct: 157 ARLGFEKEGYAKDYLLIDGQWRDHVLTALTTPD 189
>sp|P0A949|RIMJ_ECO57 Ribosomal-protein-alanine acetyltransferase OS=Escherichia coli
O157:H7 GN=rimJ PE=3 SV=1
Length = 194
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 50 GDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVL 109
G + C LGY + K+ GKG+ A+ + H+ R+ A N S +L
Sbjct: 100 GSFHAC--YLGYSIGQKWQGKGLMFEALTAAIRYM-QRTQHIHRIMANYMPHNKRSGDLL 156
Query: 110 QKAGFKREGVLRKYITLKGKATDVVMFSLLSTD 142
+ GF++EG + Y+ + G+ D V+ +L + D
Sbjct: 157 ARLGFEKEGYAKDYLLIDGQWRDHVLTALTTPD 189
>sp|P0A951|ATDA_ECOLI Spermidine N(1)-acetyltransferase OS=Escherichia coli (strain K12)
GN=speG PE=1 SV=2
Length = 186
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 56 RAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115
RA +++ +Y GKG+ATRA K+ F +L +L VD +N + + +K GF
Sbjct: 83 RAEFQIIISPEYQGKGLATRAAKLAMDYGFTVL-NLYKLYLIVDKENEKAIHIYRKLGFS 141
Query: 116 REGVLRKYITLKGKATDVV 134
EG L + G+ + +
Sbjct: 142 VEGELMHEFFINGQYRNAI 160
>sp|P0A952|ATDA_ECO57 Spermidine N(1)-acetyltransferase OS=Escherichia coli O157:H7
GN=speG PE=3 SV=2
Length = 186
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 56 RAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115
RA +++ +Y GKG+ATRA K+ F +L +L VD +N + + +K GF
Sbjct: 83 RAEFQIIISPEYQGKGLATRAAKLAMDYGFTVL-NLYKLYLIVDKENEKAIHIYRKLGFS 141
Query: 116 REGVLRKYITLKGKATDVV 134
EG L + G+ + +
Sbjct: 142 VEGELMHEFFINGQYRNAI 160
>sp|P49855|YKKB_BACSU Uncharacterized protein YkkB OS=Bacillus subtilis (strain 168)
GN=ykkB PE=4 SV=1
Length = 172
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 59 LGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118
+GY+ A ++WG G A A + F+E ++ A +D N AS +V +K G
Sbjct: 96 IGYMFARRHWGNGYAQEAARACLDYGFNE-RQFGKMAALIDPGNKASIRVAEKIGMHYSK 154
Query: 119 VLRKY 123
+RK+
Sbjct: 155 TIRKW 159
>sp|P14510|KANR_RHIRD Kanamycin resistance protein (Fragment) OS=Rhizobium radiobacter
PE=4 SV=1
Length = 108
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 56 RAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115
R I + + GKG+ T+ V+ + ++F++ P + +++ NL + + +KAGF+
Sbjct: 21 RGIDQSLANASQLGKGLGTKLVRALVELLFND-PEVTKIQTDPSPSNLRAIRCYEKAGFE 79
Query: 116 REGVL 120
R+G +
Sbjct: 80 RQGTV 84
>sp|P20092|AAC6_SERMA Aminoglycoside N(6')-acetyltransferase type 1 OS=Serratia
marcescens GN=aacA4 PE=1 SV=1
Length = 201
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 34 CLGNKPIGAI--LVTPNSGDC-------NKCRAILGYVVASKYWGKGIATRAVKMVTGII 84
L +PIG V SGD R I + + GKG+ T+ V+ + ++
Sbjct: 83 MLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDQLLANASQLGKGLGTKLVRALVELL 142
Query: 85 FDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVL 120
F++ P + +++ NL + + +KAGF+R+G +
Sbjct: 143 FND-PEVTKIQTDPSPSNLRAIRCYEKAGFERQGTV 177
>sp|P19650|AAC6_KLEPN Aminoglycoside N(6')-acetyltransferase type 1 OS=Klebsiella
pneumoniae GN=aacA4 PE=3 SV=1
Length = 201
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 55 CRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGF 114
R I + + GKG+ T+ V+ + ++F++ P + +++ NL + + +KAGF
Sbjct: 113 VRGIDQLLANASQLGKGLGTKLVRALVELLFND-PEVTKIQTDPSPSNLRAIRCYEKAGF 171
Query: 115 KREGVL 120
+R+G +
Sbjct: 172 ERQGTV 177
>sp|Q03503|NAA30_YEAST N-alpha-acetyltransferase 30 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MAK3 PE=1 SV=1
Length = 176
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 24 INNHPWFKAICLGNK------PIGAILVTPNSGDCNKCRAILGYV-VASKYWGKGIATRA 76
+N P I + NK PIG I+ + + R +G + V S Y G GIA +
Sbjct: 40 LNQWPELTYIAVDNKSGTPNIPIGCIVCKMDPHRNVRLRGYIGMLAVESTYRGHGIAKKL 99
Query: 77 VKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVM 135
V++ + E H + +V+N A+ + + GF R + +Y +G A +++
Sbjct: 100 VEIAIDKMQRE--HCDEIMLETEVENSAALNLYEGMGFIRMKRMFRYYLNEGDAFKLIL 156
>sp|O74311|NAA30_SCHPO N-alpha-acetyltransferase 30 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=MAK3 PE=3 SV=1
Length = 150
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 12 SEDGINFFKNKVINNHPWFKAICLGN-KPIGAILVTPNSGDCNKCRAILGYV----VASK 66
SE + ++ P F + L N + IGA++ D ++ + GY+ + +
Sbjct: 24 SEPYSKYVYRYFVHQWPEFSFVALDNDRFIGAVIC---KQDVHRGTTLRGYIAMLAIVKE 80
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKY 123
Y G+GIAT+ + ++ + Q + +VDN A+ ++ GF R L +Y
Sbjct: 81 YRGQGIATKLTQASLDVMKNRGA--QEIVLETEVDNEAAMSFYERLGFCRYKRLYRY 135
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
Length = 1375
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 59 LGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118
+GY++ +WGKG + +M F E L+ + + DN AS KV ++ ++ G
Sbjct: 405 IGYLLHRDFWGKGYGSEVARMCVKYGF-ETLGLEEVYCLIKEDNTASIKVAKRLEMQKVG 463
Query: 119 VLRKYITLKGKATDVVMFSL 138
K KGK ++F L
Sbjct: 464 EYPK--PYKGKKISHLVFRL 481
>sp|P0DKR8|ATDA_WIGBR Spermidine N(1)-acetyltransferase OS=Wigglesworthia glossinidia
brevipalpis GN=speG PE=3 SV=1
Length = 174
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 56 RAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115
RA ++ Y GKG A A K+ F +L +L VD N + + K GF
Sbjct: 84 RAEFQIIIDPNYQGKGYAVSATKLAINYAFS-ILNLYKLYLVVDESNEKAIHIYLKLGFI 142
Query: 116 REGVLRKYITLKGKATDVV 134
EG L GK DV+
Sbjct: 143 IEGRLIHEFFSNGKYRDVI 161
>sp|O94498|YBS8_SCHPO Uncharacterized N-acetyltransferase C18E5.08 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC18E5.08 PE=3 SV=1
Length = 186
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 57 AILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKR 116
A L + + YWG GIAT V V I F ++Q + N AS+KV K GF+
Sbjct: 104 ANLFFEIGPLYWGMGIATECVGRV--IEFGSENNIQNFIIDPIIGNEASKKVALKLGFED 161
Query: 117 EGVL 120
G
Sbjct: 162 SGTF 165
>sp|Q82857|ENV_JEMBR Envelope glycoprotein OS=Jembrana disease virus GN=env PE=3 SV=1
Length = 781
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 27 HPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAV 77
HPW C IG I G+ N C I+ V+ YWG G A R +
Sbjct: 50 HPWIILFCFAGA-IGVIGGWGLRGELNVCMLIVLVVLVPIYWGIGEAARNI 99
>sp|Q8XI68|NTPA_CLOPE Non-canonical purine NTP pyrophosphatase OS=Clostridium perfringens
(strain 13 / Type A) GN=CPE2253 PE=3 SV=1
Length = 204
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 95 EATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVM 135
EA +D+D K ++ FK+ +RKY+ KG++ +VM
Sbjct: 33 EAGIDIDVEEDGKTFEENSFKKANEIRKYLLSKGESDFIVM 73
>sp|A0R3F9|PAT_MYCS2 Acetyltransferase Pat OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_5458 PE=1 SV=1
Length = 333
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 53 NKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKA 112
N A + + V Y G+GI + M I+ + +QR A V DN+A +K++ +
Sbjct: 229 NATMAEVAFTVGDDYQGRGIGS--FLMGALIVSANYVGVQRFNARVLTDNMAMRKIMDRL 286
Query: 113 G 113
G
Sbjct: 287 G 287
>sp|Q82T76|RPOC_NITEU DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=rpoC PE=3 SV=1
Length = 1404
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 38 KPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKM-----VTGIIFDEWPHLQ 92
KP G+I+ TP + + + IL Y +++ KG+A A+K +T + D L
Sbjct: 760 KPDGSIIETPITANFREGLNILQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLV 819
Query: 93 RLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVV 134
E D D K L + G E LR+ I + ATD+V
Sbjct: 820 ITEDDCDTDGGVIMKALVEGGDVIES-LRERILGRVAATDIV 860
>sp|A9AJQ9|TIG_BURM1 Trigger factor OS=Burkholderia multivorans (strain ATCC 17616 /
249) GN=tig PE=3 SV=1
Length = 448
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A ++ +LA + K +RE
Sbjct: 232 YHGKDVAGKTAQFTVTMKKVEWPHLPEIDAEFAKSLGIEDGDLAKMRNEIKENLEREAKR 291
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 292 RTQAIVKNQVMDALL 306
>sp|A6T3L2|RPOC_JANMA DNA-directed RNA polymerase subunit beta' OS=Janthinobacterium sp.
(strain Marseille) GN=rpoC PE=3 SV=1
Length = 1414
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 35 LGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKM-----VTGIIFDEWP 89
L KP G+I+ TP + + + +L Y +++ KG+A A+K +T + D
Sbjct: 747 LMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQ 806
Query: 90 HLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVV 134
L +E N AS K L + G E LR I + A D+V
Sbjct: 807 DLVVIEDDCGTSNGASMKALVEGGEVIEA-LRDRILGRVAANDIV 850
>sp|A4G9U4|RPOC_HERAR DNA-directed RNA polymerase subunit beta' OS=Herminiimonas
arsenicoxydans GN=rpoC PE=3 SV=1
Length = 1414
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 35 LGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKM-----VTGIIFDEWP 89
L KP G+I+ TP + + + +L Y +++ KG+A A+K +T + D
Sbjct: 747 LMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQ 806
Query: 90 HLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVV 134
L +E N AS K L + G E LR I + A D+V
Sbjct: 807 DLVVIEDDCGTSNGASMKALVEGGEVIEA-LRDRILGRVAANDIV 850
>sp|Q2S9P3|HSLU_HAHCH ATP-dependent protease ATPase subunit HslU OS=Hahella chejuensis
(strain KCTC 2396) GN=hslU PE=3 SV=1
Length = 442
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 72 IATRAVKMV--TGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGK 129
I RA++ V GI+F + ++D +A + A REGV R + L
Sbjct: 238 IKQRALRAVEENGIVFID-----------EIDKVAKRSETSSADVSREGVQRDLLPLIEG 286
Query: 130 ATDVVMFSLLSTDH 143
T F +L TDH
Sbjct: 287 CTVSTKFGMLKTDH 300
>sp|Q63V42|TIG_BURPS Trigger factor OS=Burkholderia pseudomallei (strain K96243) GN=tig
PE=3 SV=1
Length = 449
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A V+ +L + K +RE
Sbjct: 233 YHGKDVAGKTAQFTVTLKKVEWPHLPEIDADFAKSLGVEDGDLTKMRAEIKENLEREAKR 292
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 293 RTQSIVKNQVMDALL 307
>sp|A3NAI6|TIG_BURP6 Trigger factor OS=Burkholderia pseudomallei (strain 668) GN=tig
PE=3 SV=1
Length = 449
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A V+ +L + K +RE
Sbjct: 233 YHGKDVAGKTAQFTVTLKKVEWPHLPEIDADFAKSLGVEDGDLTKMRAEIKENLEREAKR 292
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 293 RTQSIVKNQVMDALL 307
>sp|Q3JRC7|TIG_BURP1 Trigger factor OS=Burkholderia pseudomallei (strain 1710b) GN=tig
PE=3 SV=1
Length = 449
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A V+ +L + K +RE
Sbjct: 233 YHGKDVAGKTAQFTVTLKKVEWPHLPEIDADFAKSLGVEDGDLTKMRAEIKENLEREAKR 292
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 293 RTQSIVKNQVMDALL 307
>sp|A3NWA7|TIG_BURP0 Trigger factor OS=Burkholderia pseudomallei (strain 1106a) GN=tig
PE=3 SV=1
Length = 449
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A V+ +L + K +RE
Sbjct: 233 YHGKDVAGKTAQFTVTLKKVEWPHLPEIDADFAKSLGVEDGDLTKMRAEIKENLEREAKR 292
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 293 RTQSIVKNQVMDALL 307
>sp|A1V4X2|TIG_BURMS Trigger factor OS=Burkholderia mallei (strain SAVP1) GN=tig PE=3
SV=1
Length = 449
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A V+ +L + K +RE
Sbjct: 233 YHGKDVAGKTAQFTVTLKKVEWPHLPEIDADFAKSLGVEDGDLTKMRAEIKENLEREAKR 292
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 293 RTQSIVKNQVMDALL 307
>sp|Q62JK6|TIG_BURMA Trigger factor OS=Burkholderia mallei (strain ATCC 23344) GN=tig
PE=3 SV=1
Length = 449
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A V+ +L + K +RE
Sbjct: 233 YHGKDVAGKTAQFTVTLKKVEWPHLPEIDADFAKSLGVEDGDLTKMRAEIKENLEREAKR 292
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 293 RTQSIVKNQVMDALL 307
>sp|A2SBG2|TIG_BURM9 Trigger factor OS=Burkholderia mallei (strain NCTC 10229) GN=tig
PE=3 SV=1
Length = 449
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A V+ +L + K +RE
Sbjct: 233 YHGKDVAGKTAQFTVTLKKVEWPHLPEIDADFAKSLGVEDGDLTKMRAEIKENLEREAKR 292
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 293 RTQSIVKNQVMDALL 307
>sp|A3MKJ9|TIG_BURM7 Trigger factor OS=Burkholderia mallei (strain NCTC 10247) GN=tig
PE=3 SV=1
Length = 449
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A V+ +L + K +RE
Sbjct: 233 YHGKDVAGKTAQFTVTLKKVEWPHLPEIDADFAKSLGVEDGDLTKMRAEIKENLEREAKR 292
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 293 RTQSIVKNQVMDALL 307
>sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU OS=Aromatoleum
aromaticum (strain EbN1) GN=hslU PE=3 SV=1
Length = 442
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 70 KGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGK 129
K A RAV+ GI+F + ++D +AS+ Q A R+GV R + L
Sbjct: 239 KAEAVRAVEQ-NGIVFLD-----------EIDKVASRSEGQGADVSRQGVQRDLLPLVEG 286
Query: 130 ATDVVMFSLLSTDH 143
T + ++ TDH
Sbjct: 287 TTISTKYGMIKTDH 300
>sp|Q7M9K3|ECTA_WOLSU L-2,4-diaminobutyric acid acetyltransferase OS=Wolinella
succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 /
NCTC 11488 / FDC 602W) GN=ectA PE=3 SV=1
Length = 173
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 62 VVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAG 113
+ +K GKGIA RA++ + + + +Q +EAT NLAS+ + G
Sbjct: 73 AIEAKSRGKGIAKRAIEAILKNLERKGHCIQAIEATYTPSNLASKALFHALG 124
>sp|Q0BEF5|TIG_BURCM Trigger factor OS=Burkholderia ambifaria (strain ATCC BAA-244 /
AMMD) GN=tig PE=3 SV=1
Length = 448
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A ++ +L + K +RE
Sbjct: 232 YHGKDVAGKTAQFTVTMKKIEWPHLPEIDAEFAKSLGIEDGDLTKMRAEIKENLEREAKR 291
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 292 RTQSIVKNQVMDALL 306
>sp|B4EBM4|TIG_BURCJ Trigger factor OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=tig PE=3 SV=1
Length = 448
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A ++ +L + K +RE
Sbjct: 232 YHGKDVAGKTAQFTVTMKKIEWPHLPEIDAEFAKSLGIEDGDLTKMRAEIKENLEREAKR 291
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 292 RTQSIVKNQVMDALL 306
>sp|A0K848|TIG_BURCH Trigger factor OS=Burkholderia cenocepacia (strain HI2424) GN=tig
PE=3 SV=1
Length = 448
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A ++ +L + K +RE
Sbjct: 232 YHGKDVAGKTAQFTVTMKKIEWPHLPEIDAEFAKSLGIEDGDLTKMRAEIKENLEREAKR 291
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 292 RTQSIVKNQVMDALL 306
>sp|B1JTV1|TIG_BURCC Trigger factor OS=Burkholderia cenocepacia (strain MC0-3) GN=tig
PE=3 SV=1
Length = 448
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A ++ +L + K +RE
Sbjct: 232 YHGKDVAGKTAQFTVTMKKIEWPHLPEIDAEFAKSLGIEDGDLTKMRAEIKENLEREAKR 291
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 292 RTQSIVKNQVMDALL 306
>sp|Q1BH86|TIG_BURCA Trigger factor OS=Burkholderia cenocepacia (strain AU 1054) GN=tig
PE=3 SV=1
Length = 448
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A ++ +L + K +RE
Sbjct: 232 YHGKDVAGKTAQFTVTMKKIEWPHLPEIDAEFAKSLGIEDGDLTKMRAEIKENLEREAKR 291
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 292 RTQSIVKNQVMDALL 306
>sp|B1YRZ6|TIG_BURA4 Trigger factor OS=Burkholderia ambifaria (strain MC40-6) GN=tig
PE=3 SV=1
Length = 448
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A ++ +L + K +RE
Sbjct: 232 YHGKDVAGKTAQFTVTMKKIEWPHLPEIDAEFAKSLGIEDGDLTKMRAEIKENLEREAKR 291
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 292 RTQSIVKNQVMDALL 306
>sp|B2T3Z9|TIG_BURPP Trigger factor OS=Burkholderia phytofirmans (strain DSM 17436 /
PsJN) GN=tig PE=3 SV=1
Length = 448
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEAT------VDVDNLASQKVLQKAGFKREGVL 120
Y GK +A + + + EWPHL ++A ++ +L + K +RE
Sbjct: 232 YHGKDVAGKTAQFTITMKKIEWPHLPEIDAEFAKSLGIEDGDLTKMRAEIKDNLEREAKR 291
Query: 121 RKYITLKGKATDVVM 135
R +K + D ++
Sbjct: 292 RTQAIVKNQVMDALL 306
>sp|Q11CL4|HSLU_MESSB ATP-dependent protease ATPase subunit HslU OS=Mesorhizobium sp.
(strain BNC1) GN=hslU PE=3 SV=1
Length = 436
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 99 DVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTDH 143
++D +AS++ AG REGV R + L T + + TDH
Sbjct: 250 EIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDH 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,907,847
Number of Sequences: 539616
Number of extensions: 1904232
Number of successful extensions: 5021
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 4996
Number of HSP's gapped (non-prelim): 62
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)