Query 043366
Match_columns 145
No_of_seqs 138 out of 1296
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:20:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15130 spermidine N1-acetylt 99.9 1.5E-24 3.3E-29 144.6 16.9 127 14-143 43-169 (186)
2 PRK10151 ribosomal-protein-L7/ 99.9 3.2E-24 6.8E-29 142.3 17.2 126 13-141 49-177 (179)
3 PRK10809 ribosomal-protein-S5- 99.9 6.4E-24 1.4E-28 142.5 16.0 126 17-144 64-191 (194)
4 PRK10140 putative acetyltransf 99.9 3.8E-23 8.3E-28 134.6 17.4 124 16-140 39-162 (162)
5 TIGR03585 PseH pseudaminic aci 99.9 4.7E-23 1E-27 133.6 15.6 133 1-137 20-156 (156)
6 PF13420 Acetyltransf_4: Acety 99.9 2.9E-21 6.4E-26 125.0 16.6 120 13-135 35-155 (155)
7 COG1670 RimL Acetyltransferase 99.9 1.7E-21 3.7E-26 129.0 14.8 130 13-144 49-183 (187)
8 PF13302 Acetyltransf_3: Acety 99.8 9E-20 2E-24 116.2 13.5 112 1-115 21-142 (142)
9 COG1247 Sortase and related ac 99.8 3.6E-19 7.8E-24 115.4 15.3 128 13-143 38-167 (169)
10 PRK09491 rimI ribosomal-protei 99.8 1.7E-18 3.7E-23 111.2 14.2 104 29-139 41-145 (146)
11 TIGR03827 GNAT_ablB putative b 99.8 1.8E-18 3.9E-23 121.3 13.7 116 17-138 148-264 (266)
12 TIGR01575 rimI ribosomal-prote 99.8 3.1E-18 6.6E-23 107.5 11.8 91 27-124 30-121 (131)
13 PRK10146 aminoalkylphosphonic 99.8 3.4E-18 7.4E-23 109.3 11.6 99 18-118 37-137 (144)
14 KOG3139 N-acetyltransferase [G 99.8 7.9E-17 1.7E-21 102.0 15.0 104 29-138 57-162 (165)
15 PF13523 Acetyltransf_8: Acety 99.8 1.2E-16 2.6E-21 103.3 15.7 103 25-132 45-150 (152)
16 PRK03624 putative acetyltransf 99.8 4.4E-17 9.6E-22 103.3 12.7 94 19-119 36-130 (140)
17 TIGR02382 wecD_rffC TDP-D-fuco 99.8 5.3E-17 1.1E-21 108.8 13.6 82 33-120 104-186 (191)
18 PF00583 Acetyltransf_1: Acety 99.7 4.3E-17 9.3E-22 94.8 10.9 80 34-115 2-83 (83)
19 PRK10975 TDP-fucosamine acetyl 99.7 1.1E-16 2.5E-21 107.4 14.4 87 29-121 102-190 (194)
20 TIGR02406 ectoine_EctA L-2,4-d 99.7 8.1E-17 1.7E-21 104.7 12.0 97 28-128 39-137 (157)
21 PLN02706 glucosamine 6-phospha 99.7 3E-16 6.4E-21 101.2 11.7 102 13-119 37-144 (150)
22 PHA01807 hypothetical protein 99.7 2.9E-15 6.2E-20 96.6 12.6 82 27-113 52-137 (153)
23 PTZ00330 acetyltransferase; Pr 99.7 6.7E-15 1.5E-19 94.3 13.5 102 13-119 36-141 (147)
24 PRK10514 putative acetyltransf 99.7 2.9E-15 6.3E-20 95.9 11.5 107 13-138 36-143 (145)
25 COG3981 Predicted acetyltransf 99.7 2E-15 4.3E-20 96.8 10.4 107 13-121 43-161 (174)
26 COG0456 RimI Acetyltransferase 99.7 4.6E-15 1E-19 97.8 12.5 108 17-126 44-161 (177)
27 PF13673 Acetyltransf_10: Acet 99.7 9.6E-15 2.1E-19 90.1 12.9 85 16-114 32-117 (117)
28 PHA00673 acetyltransferase dom 99.6 1.1E-14 2.4E-19 93.3 12.4 98 19-119 46-146 (154)
29 PF13508 Acetyltransf_7: Acety 99.6 1.2E-14 2.6E-19 83.9 11.2 76 28-116 3-79 (79)
30 TIGR03448 mycothiol_MshD mycot 99.6 2.8E-14 6.1E-19 101.2 12.9 86 30-119 200-288 (292)
31 TIGR03103 trio_acet_GNAT GNAT- 99.6 3.9E-14 8.4E-19 108.1 14.2 93 27-121 122-219 (547)
32 PRK10314 putative acyltransfer 99.6 1.7E-14 3.6E-19 93.5 10.4 86 28-119 48-134 (153)
33 PRK10562 putative acetyltransf 99.6 4.4E-14 9.6E-19 90.6 12.2 96 27-141 47-143 (145)
34 PRK09831 putative acyltransfer 99.6 3.6E-14 7.7E-19 91.3 11.6 92 28-140 53-145 (147)
35 PRK07757 acetyltransferase; Pr 99.6 6.1E-14 1.3E-18 90.5 10.7 79 30-119 43-122 (152)
36 PF08445 FR47: FR47-like prote 99.5 2.5E-13 5.4E-18 79.6 11.1 60 57-119 22-82 (86)
37 KOG3216 Diamine acetyltransfer 99.5 5.9E-13 1.3E-17 83.8 12.1 84 36-121 63-148 (163)
38 PRK07922 N-acetylglutamate syn 99.5 2E-13 4.4E-18 89.8 10.7 80 29-119 46-127 (169)
39 TIGR03448 mycothiol_MshD mycot 99.5 1.6E-12 3.6E-17 92.2 12.7 85 28-122 46-131 (292)
40 TIGR01686 FkbH FkbH-like domai 99.5 9.8E-13 2.1E-17 94.7 11.5 75 36-117 242-319 (320)
41 COG3393 Predicted acetyltransf 99.4 4.1E-12 8.9E-17 86.9 12.3 85 32-123 181-266 (268)
42 PLN02825 amino-acid N-acetyltr 99.4 2.3E-12 4.9E-17 97.2 11.4 82 29-119 408-490 (515)
43 COG1246 ArgA N-acetylglutamate 99.4 3.5E-12 7.6E-17 80.9 9.5 81 30-119 42-123 (153)
44 TIGR00124 cit_ly_ligase [citra 99.4 6.8E-12 1.5E-16 90.3 12.2 97 13-122 13-112 (332)
45 PRK12308 bifunctional arginino 99.4 2.7E-12 5.9E-17 99.4 10.8 82 28-120 503-585 (614)
46 cd02169 Citrate_lyase_ligase C 99.4 3.7E-12 7.9E-17 90.4 10.6 75 30-118 8-83 (297)
47 PRK05279 N-acetylglutamate syn 99.4 4E-12 8.8E-17 95.1 11.4 82 29-119 335-417 (441)
48 KOG3396 Glucosamine-phosphate 99.4 5.8E-12 1.3E-16 77.8 9.4 102 13-119 37-144 (150)
49 PF13527 Acetyltransf_9: Acety 99.4 1.5E-11 3.2E-16 77.0 11.4 93 16-117 31-127 (127)
50 TIGR01890 N-Ac-Glu-synth amino 99.4 5.6E-12 1.2E-16 94.0 11.0 82 29-119 323-405 (429)
51 KOG2488 Acetyltransferase (GNA 99.4 2.8E-12 6E-17 83.5 7.4 90 29-121 93-184 (202)
52 KOG4135 Predicted phosphogluco 99.4 1.7E-11 3.6E-16 76.9 10.2 106 13-119 48-170 (185)
53 PRK13688 hypothetical protein; 99.3 3.8E-11 8.2E-16 77.9 10.5 84 27-120 44-134 (156)
54 KOG3235 Subunit of the major N 99.3 4E-11 8.7E-16 76.0 9.5 109 16-126 30-142 (193)
55 KOG3234 Acetyltransferase, (GN 99.3 2.5E-11 5.5E-16 76.8 8.3 100 35-138 49-149 (173)
56 PF12746 GNAT_acetyltran: GNAT 99.3 2E-10 4.3E-15 80.1 12.5 90 28-126 165-254 (265)
57 PRK01346 hypothetical protein; 99.2 6.2E-10 1.4E-14 82.7 13.1 88 29-123 48-140 (411)
58 TIGR01211 ELP3 histone acetylt 99.1 1.2E-09 2.7E-14 82.8 10.4 79 36-119 422-516 (522)
59 COG3153 Predicted acetyltransf 99.1 3.8E-09 8.1E-14 69.0 11.2 87 27-121 45-133 (171)
60 KOG3397 Acetyltransferases [Ge 99.1 1.4E-09 3.1E-14 70.1 8.9 79 36-122 65-144 (225)
61 cd04301 NAT_SF N-Acyltransfera 99.1 2.8E-09 6E-14 57.7 8.3 62 31-96 2-64 (65)
62 PF08444 Gly_acyl_tr_C: Aralky 99.0 1E-09 2.2E-14 63.7 6.3 73 35-118 6-79 (89)
63 KOG3138 Predicted N-acetyltran 99.0 5.8E-10 1.3E-14 73.6 5.4 119 17-137 45-170 (187)
64 COG2153 ElaA Predicted acyltra 99.0 6.2E-09 1.3E-13 65.3 9.3 86 28-119 50-136 (155)
65 PF14542 Acetyltransf_CG: GCN5 98.8 1.2E-07 2.6E-12 54.4 9.1 70 31-112 2-72 (78)
66 PF12568 DUF3749: Acetyltransf 98.7 6.8E-07 1.5E-11 55.3 9.7 91 17-117 28-123 (128)
67 PF13718 GNAT_acetyltr_2: GNAT 98.6 3.9E-06 8.5E-11 56.2 11.9 113 19-134 18-191 (196)
68 COG5628 Predicted acetyltransf 98.5 1.9E-06 4.1E-11 52.5 8.9 81 29-115 38-119 (143)
69 PF11039 DUF2824: Protein of u 98.4 8E-06 1.7E-10 50.5 9.1 106 27-142 37-142 (151)
70 COG2388 Predicted acetyltransf 98.4 2E-06 4.4E-11 51.3 6.2 60 27-92 14-74 (99)
71 COG3053 CitC Citrate lyase syn 98.3 8.2E-06 1.8E-10 57.2 8.8 98 13-123 18-119 (352)
72 KOG4144 Arylalkylamine N-acety 98.1 6E-06 1.3E-10 52.6 4.0 81 36-120 70-162 (190)
73 COG0454 WecD Histone acetyltra 98.1 9.6E-06 2.1E-10 48.5 4.7 44 61-114 87-130 (156)
74 COG1444 Predicted P-loop ATPas 98.0 0.00022 4.9E-09 56.4 12.2 106 23-132 465-604 (758)
75 COG3818 Predicted acetyltransf 98.0 7.9E-05 1.7E-09 46.3 7.4 62 57-120 85-149 (167)
76 COG4552 Eis Predicted acetyltr 97.9 9.1E-05 2E-09 53.4 7.3 87 28-121 39-129 (389)
77 PF00765 Autoind_synth: Autoin 97.7 0.0034 7.3E-08 41.9 13.0 107 27-139 44-174 (182)
78 PF13480 Acetyltransf_6: Acety 97.4 0.0046 1E-07 38.7 9.6 66 27-98 70-135 (142)
79 PF13880 Acetyltransf_13: ESCO 97.3 0.00056 1.2E-08 38.1 3.7 52 60-112 10-61 (70)
80 PF06852 DUF1248: Protein of u 97.2 0.027 5.8E-07 37.5 11.5 78 36-119 55-137 (181)
81 TIGR03694 exosort_acyl putativ 97.1 0.034 7.3E-07 38.8 12.5 97 29-131 56-209 (241)
82 PHA00771 head assembly protein 97.1 0.0069 1.5E-07 37.5 7.4 103 30-142 40-142 (151)
83 COG1243 ELP3 Histone acetyltra 97.1 0.0012 2.6E-08 49.4 4.8 79 36-119 415-509 (515)
84 KOG2535 RNA polymerase II elon 97.0 0.0014 2.9E-08 47.6 4.7 51 65-119 497-547 (554)
85 PRK13834 putative autoinducer 97.0 0.057 1.2E-06 36.8 13.7 92 33-130 59-175 (207)
86 COG3882 FkbH Predicted enzyme 96.9 0.0028 6.1E-08 47.9 5.5 93 19-118 449-549 (574)
87 PF04377 ATE_C: Arginine-tRNA- 96.8 0.035 7.5E-07 34.9 9.1 68 28-101 39-106 (128)
88 TIGR03827 GNAT_ablB putative b 96.8 0.0059 1.3E-07 43.1 6.4 64 71-143 21-84 (266)
89 COG3375 Uncharacterized conser 96.5 0.074 1.6E-06 36.5 9.9 94 27-124 45-142 (266)
90 COG3916 LasI N-acyl-L-homoseri 96.4 0.16 3.4E-06 34.4 12.5 101 32-138 57-181 (209)
91 PF05301 Mec-17: Touch recepto 96.4 0.012 2.7E-07 36.2 5.1 72 36-112 17-98 (120)
92 PRK01305 arginyl-tRNA-protein 96.1 0.23 4.9E-06 34.7 10.7 68 29-102 145-212 (240)
93 PF01853 MOZ_SAS: MOZ/SAS fami 95.9 0.092 2E-06 35.1 7.6 46 38-87 66-112 (188)
94 cd04264 DUF619-NAGS DUF619 dom 95.8 0.16 3.4E-06 30.5 7.6 63 32-103 12-75 (99)
95 PF01233 NMT: Myristoyl-CoA:pr 95.7 0.31 6.8E-06 31.7 10.1 80 13-94 59-147 (162)
96 TIGR03019 pepcterm_femAB FemAB 95.6 0.13 2.7E-06 37.5 8.1 93 29-128 196-290 (330)
97 PHA01733 hypothetical protein 95.2 0.047 1E-06 35.1 4.2 85 31-121 50-134 (153)
98 PHA00432 internal virion prote 95.0 0.5 1.1E-05 30.0 8.5 84 26-119 35-121 (137)
99 PLN03238 probable histone acet 94.8 0.16 3.5E-06 36.1 6.5 48 36-87 139-187 (290)
100 cd04265 DUF619-NAGS-U DUF619 d 94.6 0.52 1.1E-05 28.2 7.8 60 34-103 15-75 (99)
101 KOG2036 Predicted P-loop ATPas 94.4 0.36 7.8E-06 38.8 7.9 29 60-88 619-647 (1011)
102 COG2401 ABC-type ATPase fused 93.6 0.054 1.2E-06 40.8 2.2 60 57-118 242-307 (593)
103 PTZ00064 histone acetyltransfe 93.4 0.25 5.4E-06 37.9 5.4 47 37-87 369-416 (552)
104 PLN03239 histone acetyltransfe 93.4 0.31 6.8E-06 35.7 5.8 47 37-87 198-245 (351)
105 PF04958 AstA: Arginine N-succ 92.8 0.68 1.5E-05 34.0 6.7 57 27-83 58-149 (342)
106 PLN00104 MYST -like histone ac 92.4 0.24 5.1E-06 37.6 4.2 47 37-87 291-338 (450)
107 TIGR03243 arg_catab_AOST argin 92.3 0.87 1.9E-05 33.4 6.8 53 27-79 54-141 (335)
108 KOG2696 Histone acetyltransfer 92.3 0.82 1.8E-05 33.8 6.6 59 39-100 200-259 (403)
109 TIGR03245 arg_AOST_alph argini 92.0 1.3 2.9E-05 32.5 7.4 53 27-79 55-142 (336)
110 TIGR03244 arg_catab_AstA argin 91.8 1.3 2.9E-05 32.5 7.2 53 27-79 54-141 (336)
111 PRK10456 arginine succinyltran 91.8 1.2 2.7E-05 32.7 7.1 53 27-79 56-143 (344)
112 KOG4601 Uncharacterized conser 90.4 0.71 1.5E-05 31.9 4.4 51 57-112 110-160 (264)
113 PF02474 NodA: Nodulation prot 90.4 1 2.2E-05 29.8 5.0 53 55-113 84-137 (196)
114 KOG2747 Histone acetyltransfer 90.2 0.55 1.2E-05 35.0 4.1 45 42-87 247-292 (396)
115 PRK14852 hypothetical protein; 90.1 3.2 7E-05 34.9 8.7 100 31-138 78-197 (989)
116 PF04816 DUF633: Family of unk 90.1 4.5 9.8E-05 27.6 8.8 67 71-139 74-140 (205)
117 PF13444 Acetyltransf_5: Acety 89.9 2 4.4E-05 25.5 5.8 51 27-77 29-100 (101)
118 PF09924 DUF2156: Uncharacteri 89.4 3.3 7.2E-05 29.7 7.6 65 29-99 181-247 (299)
119 PF11090 DUF2833: Protein of u 87.6 3.9 8.5E-05 23.8 6.2 27 91-117 56-82 (86)
120 PRK02983 lysS lysyl-tRNA synth 86.0 7 0.00015 33.6 8.5 58 36-100 429-487 (1094)
121 COG2935 Putative arginyl-tRNA: 84.9 8.8 0.00019 27.0 7.2 61 36-102 159-219 (253)
122 PF11124 Pho86: Inorganic phos 84.5 13 0.00029 27.0 9.5 88 31-118 172-270 (304)
123 COG5027 SAS2 Histone acetyltra 83.5 0.84 1.8E-05 33.5 1.9 38 39-80 249-287 (395)
124 PF09390 DUF1999: Protein of u 83.3 9.7 0.00021 24.5 9.2 87 27-119 54-141 (161)
125 PHA02769 hypothetical protein; 82.1 2 4.2E-05 26.4 2.8 45 73-120 94-140 (154)
126 PRK00756 acyltransferase NodA; 79.5 7.6 0.00016 25.7 5.0 52 55-112 84-136 (196)
127 PF12953 DUF3842: Domain of un 79.2 6.1 0.00013 24.9 4.3 63 66-134 6-68 (131)
128 KOG0207 Cation transport ATPas 78.8 30 0.00064 29.2 9.0 76 13-116 689-764 (951)
129 KOG2779 N-myristoyl transferas 78.2 9.1 0.0002 28.5 5.6 96 14-111 117-224 (421)
130 COG2898 Uncharacterized conser 76.8 21 0.00046 28.2 7.5 61 34-100 399-460 (538)
131 PF04768 DUF619: Protein of un 75.6 15 0.00033 24.3 5.7 72 34-112 66-138 (170)
132 cd09012 Glo_EDI_BRP_like_24 Th 74.2 5.9 0.00013 24.0 3.5 16 103-118 12-27 (124)
133 cd08350 BLMT_like BLMT, a bleo 73.5 12 0.00025 22.5 4.6 18 104-121 15-32 (120)
134 KOG3698 Hyaluronoglucosaminida 73.4 6.1 0.00013 31.4 3.9 56 62-119 823-878 (891)
135 cd08356 Glo_EDI_BRP_like_17 Th 73.1 5.1 0.00011 24.0 3.0 21 104-124 14-34 (113)
136 PF02100 ODC_AZ: Ornithine dec 69.7 14 0.0003 22.5 4.2 58 61-119 26-87 (108)
137 cd08358 Glo_EDI_BRP_like_21 Th 69.6 13 0.00027 23.3 4.2 18 102-119 13-31 (127)
138 cd07235 MRD Mitomycin C resist 68.1 7.3 0.00016 23.3 2.9 25 93-118 3-27 (122)
139 COG2384 Predicted SAM-dependen 67.4 39 0.00085 23.5 7.3 67 71-139 93-159 (226)
140 COG5092 NMT1 N-myristoyl trans 65.5 25 0.00054 25.9 5.4 72 15-86 116-196 (451)
141 COG2348 Peptidoglycan interpep 65.5 60 0.0013 24.9 9.6 90 29-123 41-148 (418)
142 cd08353 Glo_EDI_BRP_like_7 Thi 63.7 7.3 0.00016 24.2 2.3 29 90-119 3-31 (142)
143 KOG1472 Histone acetyltransfer 63.4 2.3 5E-05 34.4 -0.0 103 13-122 404-508 (720)
144 PTZ00129 40S ribosomal protein 62.7 40 0.00086 21.9 6.9 52 68-121 68-131 (149)
145 PF00571 CBS: CBS domain CBS d 60.4 12 0.00026 19.0 2.5 19 28-46 31-49 (57)
146 cd07267 THT_Oxygenase_N N-term 60.1 26 0.00057 20.7 4.3 29 91-120 4-32 (113)
147 COG2231 Uncharacterized protei 59.5 14 0.0003 25.3 3.1 40 70-118 121-160 (215)
148 PF07315 DUF1462: Protein of u 50.4 37 0.00081 20.0 3.5 30 13-43 52-81 (93)
149 cd08342 HPPD_N_like N-terminal 50.3 39 0.00085 20.8 4.0 28 93-121 3-31 (136)
150 cd08344 MhqB_like_N N-terminal 50.2 33 0.00072 20.2 3.6 29 90-119 2-30 (112)
151 KOG4387 Ornithine decarboxylas 49.6 78 0.0017 21.3 5.9 59 61-120 105-166 (191)
152 PF12681 Glyoxalase_2: Glyoxal 49.1 32 0.00069 19.8 3.3 23 103-125 7-30 (108)
153 PRK14019 bifunctional 3,4-dihy 48.8 32 0.0007 25.8 3.8 47 63-121 317-363 (367)
154 PF12261 T_hemolysin: Thermost 48.7 80 0.0017 21.2 5.4 99 13-119 11-142 (179)
155 smart00116 CBS Domain in cysta 48.7 29 0.00062 16.0 3.3 19 28-46 24-42 (49)
156 PF00925 GTP_cyclohydro2: GTP 47.4 63 0.0014 21.3 4.7 47 64-121 122-168 (169)
157 COG0826 Collagenase and relate 45.9 75 0.0016 23.7 5.4 39 80-118 103-142 (347)
158 COG2217 ZntA Cation transport 45.7 1.8E+02 0.0038 24.2 9.0 23 30-52 519-541 (713)
159 COG3607 Predicted lactoylgluta 45.0 19 0.00042 22.6 1.8 19 103-121 15-33 (133)
160 PF06559 DCD: 2'-deoxycytidine 44.5 13 0.00029 27.4 1.3 35 35-72 322-356 (364)
161 cd08346 PcpA_N_like N-terminal 43.7 56 0.0012 19.2 3.9 29 91-120 2-31 (126)
162 PF06564 YhjQ: YhjQ protein; 43.6 37 0.00081 23.9 3.3 43 70-115 11-53 (243)
163 cd07238 Glo_EDI_BRP_like_5 Thi 43.4 31 0.00066 20.2 2.6 15 104-118 13-28 (112)
164 cd07240 ED_TypeI_classII_N N-t 41.3 72 0.0016 18.5 4.2 31 91-122 3-34 (117)
165 PRK15312 antimicrobial resista 41.1 39 0.00085 24.5 3.2 61 13-76 190-251 (298)
166 COG3138 AstA Arginine/ornithin 41.0 1.4E+02 0.0031 21.8 6.2 23 97-119 227-249 (336)
167 PF00903 Glyoxalase: Glyoxalas 40.2 45 0.00098 19.6 3.1 30 91-121 2-32 (128)
168 PF06491 Disulph_isomer: Disul 39.2 51 0.0011 20.9 3.1 26 26-51 94-119 (136)
169 PF04339 DUF482: Protein of un 38.9 1.7E+02 0.0037 22.1 7.7 92 16-123 237-333 (370)
170 TIGR03628 arch_S11P archaeal r 38.5 96 0.0021 19.1 7.0 52 68-121 42-105 (114)
171 PF04015 DUF362: Domain of unk 38.1 98 0.0021 20.8 4.7 45 73-119 21-67 (206)
172 PF01136 Peptidase_U32: Peptid 38.0 89 0.0019 21.4 4.6 39 81-119 27-66 (233)
173 PRK11033 zntA zinc/cadmium/mer 37.6 2.4E+02 0.0052 23.5 9.3 60 29-115 549-608 (741)
174 PF07395 Mig-14: Mig-14; Inte 37.6 51 0.0011 23.6 3.3 72 13-87 160-236 (264)
175 PRK09607 rps11p 30S ribosomal 37.6 1.1E+02 0.0023 19.5 6.7 52 68-121 49-112 (132)
176 COG3473 Maleate cis-trans isom 37.4 60 0.0013 22.5 3.4 30 90-119 117-149 (238)
177 PF13380 CoA_binding_2: CoA bi 37.1 98 0.0021 18.8 5.2 78 29-118 29-107 (116)
178 KOG3014 Protein involved in es 37.1 1.2E+02 0.0027 21.5 5.0 50 60-111 188-238 (257)
179 COG0807 RibA GTP cyclohydrolas 37.0 1.2E+02 0.0025 20.7 4.8 52 60-122 119-170 (193)
180 cd08362 BphC5-RrK37_N_like N-t 36.5 90 0.002 18.2 4.8 35 90-125 3-38 (120)
181 PF08901 DUF1847: Protein of u 36.2 96 0.0021 20.3 4.1 44 77-122 43-90 (157)
182 cd04582 CBS_pair_ABC_OpuCA_ass 35.7 74 0.0016 18.1 3.5 20 29-48 26-45 (106)
183 PRK13886 conjugal transfer pro 35.3 93 0.002 21.9 4.3 46 69-116 11-56 (241)
184 TIGR03645 glyox_marine lactoyl 35.2 49 0.0011 21.3 2.8 27 90-117 4-31 (162)
185 PRK10291 glyoxalase I; Provisi 34.9 55 0.0012 19.8 2.9 18 103-120 8-26 (129)
186 cd07253 Glo_EDI_BRP_like_2 Thi 34.9 68 0.0015 18.7 3.3 31 90-121 3-34 (125)
187 PRK01122 potassium-transportin 34.3 2.7E+02 0.0058 23.1 9.4 25 28-52 425-449 (679)
188 cd04590 CBS_pair_CorC_HlyC_ass 34.0 94 0.002 17.8 3.8 31 16-46 76-106 (111)
189 PF06399 GFRP: GTP cyclohydrol 33.8 69 0.0015 18.4 2.8 45 74-119 25-69 (83)
190 cd04641 CBS_pair_28 The CBS do 33.7 83 0.0018 18.5 3.5 33 14-46 83-115 (120)
191 PF14696 Glyoxalase_5: Hydroxy 33.6 18 0.00039 23.1 0.5 32 90-122 9-40 (139)
192 PRK00393 ribA GTP cyclohydrola 33.4 1.5E+02 0.0033 20.0 5.1 46 64-120 124-169 (197)
193 PRK14010 potassium-transportin 33.4 2.8E+02 0.006 23.0 9.2 59 29-114 422-480 (673)
194 cd04619 CBS_pair_6 The CBS dom 33.1 86 0.0019 18.2 3.5 33 14-46 77-109 (114)
195 TIGR01497 kdpB K+-transporting 32.7 2.9E+02 0.0062 22.9 8.9 59 29-114 427-485 (675)
196 TIGR00505 ribA GTP cyclohydrol 32.7 1.6E+02 0.0034 19.8 5.1 46 64-120 121-166 (191)
197 cd07255 Glo_EDI_BRP_like_12 Th 32.6 83 0.0018 18.6 3.4 34 90-124 2-36 (125)
198 PLN02300 lactoylglutathione ly 32.5 62 0.0013 23.0 3.1 42 77-119 11-53 (286)
199 cd04266 DUF619-NAGS-FABP DUF61 32.2 1.2E+02 0.0026 18.5 7.8 63 35-103 16-82 (108)
200 cd04610 CBS_pair_ParBc_assoc T 31.9 95 0.0021 17.6 3.5 31 16-46 72-102 (107)
201 cd07265 2_3_CTD_N N-terminal d 31.8 70 0.0015 19.0 3.0 30 90-120 4-34 (122)
202 cd04604 CBS_pair_KpsF_GutQ_ass 31.6 92 0.002 17.9 3.4 31 16-46 79-109 (114)
203 cd08347 PcpA_C_like C-terminal 31.6 1.1E+02 0.0024 19.6 4.0 31 90-121 1-32 (157)
204 cd04583 CBS_pair_ABC_OpuCA_ass 31.3 1E+02 0.0022 17.5 3.6 19 28-46 86-104 (109)
205 PF04339 DUF482: Protein of un 31.2 2.3E+02 0.0051 21.4 6.6 94 29-127 45-167 (370)
206 COG1724 Predicted RNA binding 30.8 68 0.0015 17.7 2.4 18 103-120 10-27 (66)
207 PRK05031 tRNA (uracil-5-)-meth 30.7 1.3E+02 0.0027 22.5 4.6 51 61-121 292-343 (362)
208 cd07243 2_3_CTD_C C-terminal d 30.6 1E+02 0.0022 19.3 3.6 30 90-120 6-36 (143)
209 cd04587 CBS_pair_CAP-ED_DUF294 30.2 83 0.0018 18.0 3.1 32 15-46 77-108 (113)
210 COG2092 EFB1 Translation elong 30.1 1.1E+02 0.0023 18.0 3.2 37 6-45 9-49 (88)
211 PRK09319 bifunctional 3,4-dihy 30.1 3E+02 0.0064 22.2 7.1 31 90-122 350-380 (555)
212 PRK09318 bifunctional 3,4-dihy 29.9 1.8E+02 0.0038 22.2 5.2 48 63-121 309-356 (387)
213 COG0346 GloA Lactoylglutathion 29.7 87 0.0019 18.1 3.2 31 90-121 2-33 (138)
214 PRK12303 tumor necrosis factor 29.7 1.2E+02 0.0025 19.2 3.6 48 71-118 104-151 (192)
215 PF12652 CotJB: CotJB protein; 29.5 34 0.00074 19.5 1.1 36 75-112 3-38 (78)
216 cd04603 CBS_pair_KefB_assoc Th 29.4 1.2E+02 0.0026 17.5 3.8 32 15-46 75-106 (111)
217 KOG1201 Hydroxysteroid 17-beta 29.3 1.6E+02 0.0035 21.6 4.7 41 67-113 45-86 (300)
218 cd04615 CBS_pair_2 The CBS dom 29.3 1.2E+02 0.0025 17.4 3.6 31 16-46 78-108 (113)
219 cd08357 Glo_EDI_BRP_like_18 Th 28.8 86 0.0019 18.4 3.0 17 103-119 11-28 (125)
220 PF02374 ArsA_ATPase: Anion-tr 28.6 1E+02 0.0022 22.5 3.7 47 71-118 11-57 (305)
221 cd04640 CBS_pair_27 The CBS do 28.6 1.3E+02 0.0029 17.8 4.2 31 16-46 90-121 (126)
222 PF02743 Cache_1: Cache domain 28.5 67 0.0015 17.7 2.3 30 13-42 39-68 (81)
223 cd07264 Glo_EDI_BRP_like_15 Th 28.5 1.1E+02 0.0023 18.1 3.4 16 103-118 12-28 (125)
224 TIGR02990 ectoine_eutA ectoine 28.4 2E+02 0.0043 20.2 5.0 40 78-119 109-151 (239)
225 cd08364 FosX FosX, a fosfomyci 28.3 1.4E+02 0.0029 18.2 3.9 29 90-119 4-33 (131)
226 cd07250 HPPD_C_like C-terminal 28.2 83 0.0018 21.0 3.0 31 90-120 3-35 (191)
227 COG0100 RpsK Ribosomal protein 27.9 1.6E+02 0.0036 18.6 6.6 59 61-121 50-112 (129)
228 COG3250 LacZ Beta-galactosidas 27.8 45 0.00097 28.0 1.9 43 89-131 258-300 (808)
229 cd04627 CBS_pair_14 The CBS do 27.8 1.1E+02 0.0025 18.0 3.4 31 16-46 88-118 (123)
230 cd07266 HPCD_N_class_II N-term 27.4 84 0.0018 18.5 2.8 29 90-119 4-33 (121)
231 cd07241 Glo_EDI_BRP_like_3 Thi 27.4 1.1E+02 0.0023 18.0 3.2 27 92-119 3-30 (125)
232 cd07263 Glo_EDI_BRP_like_16 Th 27.4 76 0.0016 18.3 2.6 18 103-120 10-28 (119)
233 KOG1412 Aspartate aminotransfe 27.1 2.3E+02 0.0049 21.3 5.1 31 90-121 124-154 (410)
234 cd04592 CBS_pair_EriC_assoc_eu 27.1 1.5E+02 0.0032 18.3 3.9 20 28-47 25-44 (133)
235 PF05651 Diacid_rec: Putative 27.0 1.1E+02 0.0024 19.3 3.3 25 27-51 71-95 (135)
236 cd04596 CBS_pair_DRTGG_assoc T 26.9 1.3E+02 0.0028 17.2 3.5 32 15-46 72-103 (108)
237 cd04624 CBS_pair_11 The CBS do 26.9 1.2E+02 0.0027 17.3 3.4 19 29-47 26-44 (112)
238 cd07246 Glo_EDI_BRP_like_8 Thi 26.7 1.4E+02 0.003 17.4 4.3 18 103-120 13-31 (122)
239 cd04606 CBS_pair_Mg_transporte 26.7 1.2E+02 0.0027 17.3 3.4 32 16-47 73-104 (109)
240 PRK13913 3-methyladenine DNA g 26.6 87 0.0019 21.7 2.9 38 70-116 127-164 (218)
241 cd08343 ED_TypeI_classII_C C-t 26.6 1.5E+02 0.0033 17.9 3.9 17 103-119 11-28 (131)
242 cd08361 PpCmtC_N N-terminal do 26.5 1E+02 0.0022 18.6 3.0 28 91-119 7-35 (124)
243 COG1437 CyaB Adenylate cyclase 26.5 1.9E+02 0.0042 19.4 4.4 31 92-123 79-109 (178)
244 cd04611 CBS_pair_PAS_GGDEF_DUF 26.3 1.3E+02 0.0028 17.1 3.4 17 30-46 90-106 (111)
245 cd04585 CBS_pair_ACT_assoc2 Th 26.2 1.2E+02 0.0026 17.5 3.3 18 29-46 100-117 (122)
246 cd07242 Glo_EDI_BRP_like_6 Thi 26.1 1.5E+02 0.0032 17.5 4.1 29 91-120 2-34 (128)
247 cd04607 CBS_pair_NTP_transfera 26.1 1.3E+02 0.0029 17.2 3.5 31 16-46 78-108 (113)
248 cd04883 ACT_AcuB C-terminal AC 26.0 1.1E+02 0.0025 16.1 3.9 28 91-118 42-70 (72)
249 cd08355 Glo_EDI_BRP_like_14 Th 26.0 1.1E+02 0.0023 18.1 3.1 18 103-120 11-29 (122)
250 cd04597 CBS_pair_DRTGG_assoc2 25.8 1.5E+02 0.0033 17.5 3.8 32 15-46 77-108 (113)
251 TIGR01512 ATPase-IB2_Cd heavy 25.7 3.4E+02 0.0074 21.5 7.5 37 77-115 367-403 (536)
252 cd04602 CBS_pair_IMPDH_2 This 25.5 1.5E+02 0.0032 17.2 3.6 31 16-46 79-109 (114)
253 PRK14968 putative methyltransf 25.5 1.9E+02 0.0042 18.6 6.3 46 75-122 129-174 (188)
254 PLN02831 Bifunctional GTP cycl 25.4 2.1E+02 0.0046 22.3 5.0 47 64-121 363-409 (450)
255 PF07927 YcfA: YcfA-like prote 25.3 1E+02 0.0022 15.7 2.5 15 105-119 4-18 (56)
256 cd08359 Glo_EDI_BRP_like_22 Th 25.3 1.5E+02 0.0033 17.3 3.8 16 104-119 14-30 (119)
257 cd04605 CBS_pair_MET2_assoc Th 25.1 1.4E+02 0.0031 16.9 3.6 19 29-47 27-45 (110)
258 PRK15452 putative protease; Pr 25.1 1.7E+02 0.0036 22.7 4.5 23 96-118 117-139 (443)
259 PF05891 Methyltransf_PK: AdoM 25.0 85 0.0018 21.8 2.6 35 103-138 183-217 (218)
260 cd04635 CBS_pair_22 The CBS do 24.9 1.5E+02 0.0032 17.3 3.6 31 16-46 87-117 (122)
261 COG3159 Uncharacterized protei 24.8 2.1E+02 0.0044 19.9 4.3 54 32-87 158-212 (218)
262 PRK14831 undecaprenyl pyrophos 24.6 97 0.0021 22.0 2.9 36 65-102 41-77 (249)
263 TIGR00068 glyox_I lactoylgluta 24.6 1.1E+02 0.0023 19.2 3.0 29 90-119 17-46 (150)
264 cd08352 Glo_EDI_BRP_like_1 Thi 24.5 1.5E+02 0.0033 17.1 3.9 29 90-119 3-32 (125)
265 cd08349 BLMA_like Bleomycin bi 24.4 1.5E+02 0.0032 16.9 4.2 17 104-120 11-28 (112)
266 cd04600 CBS_pair_HPP_assoc Thi 24.0 1.6E+02 0.0034 17.2 3.6 31 16-46 89-119 (124)
267 cd04601 CBS_pair_IMPDH This cd 23.9 1.5E+02 0.0032 16.8 3.4 30 18-47 77-106 (110)
268 cd04639 CBS_pair_26 The CBS do 23.8 1.5E+02 0.0033 16.8 3.4 19 29-47 26-44 (111)
269 cd04632 CBS_pair_19 The CBS do 23.7 1.7E+02 0.0037 17.3 3.7 19 28-46 25-43 (128)
270 cd04612 CBS_pair_SpoIVFB_EriC_ 23.6 1.5E+02 0.0033 16.8 3.6 31 16-46 76-106 (111)
271 cd07252 BphC1-RGP6_N_like N-te 23.6 94 0.002 18.5 2.5 29 90-119 2-31 (120)
272 cd09013 BphC-JF8_N_like N-term 23.4 1.6E+02 0.0035 17.3 3.5 31 90-121 6-37 (121)
273 KOG2779 N-myristoyl transferas 23.3 3.4E+02 0.0074 20.7 7.2 80 29-117 308-395 (421)
274 cd07262 Glo_EDI_BRP_like_19 Th 23.2 1.6E+02 0.0035 17.3 3.5 26 93-120 3-33 (123)
275 cd04623 CBS_pair_10 The CBS do 23.1 1.6E+02 0.0034 16.7 3.5 19 29-47 26-44 (113)
276 PF02794 HlyC: RTX toxin acylt 23.0 2.1E+02 0.0045 18.1 4.1 33 13-47 22-54 (133)
277 cd08348 BphC2-C3-RGP6_C_like T 23.0 1.8E+02 0.0039 17.4 4.6 29 92-121 3-32 (134)
278 cd07256 HPCD_C_class_II C-term 22.9 1.2E+02 0.0026 19.4 3.0 28 90-118 3-31 (161)
279 cd07254 Glo_EDI_BRP_like_20 Th 22.5 1.8E+02 0.0038 17.1 3.6 24 96-119 5-30 (120)
280 PRK09311 bifunctional 3,4-dihy 22.5 2.7E+02 0.0059 21.3 5.1 47 64-121 329-375 (402)
281 cd08354 Glo_EDI_BRP_like_13 Th 22.5 1.6E+02 0.0034 17.1 3.4 16 103-118 12-28 (122)
282 cd04642 CBS_pair_29 The CBS do 22.4 1.5E+02 0.0033 17.5 3.3 19 28-46 103-121 (126)
283 PRK06724 hypothetical protein; 22.2 1.8E+02 0.0039 17.9 3.6 27 90-117 7-37 (128)
284 cd04593 CBS_pair_EriC_assoc_ba 22.2 1.7E+02 0.0037 16.8 3.6 20 28-47 25-44 (115)
285 cd07237 BphC1-RGP6_C_like C-te 22.1 2.2E+02 0.0047 18.0 4.1 29 90-119 9-38 (154)
286 TIGR01511 ATPase-IB1_Cu copper 22.1 4.2E+02 0.009 21.2 7.6 36 77-115 410-445 (562)
287 PRK11478 putative lyase; Provi 21.9 1.4E+02 0.003 17.7 3.0 28 90-118 6-34 (129)
288 cd04801 CBS_pair_M50_like This 21.9 1.7E+02 0.0038 16.8 3.8 19 29-47 92-110 (114)
289 cd04614 CBS_pair_1 The CBS dom 21.7 1.7E+02 0.0036 16.5 3.4 18 29-46 74-91 (96)
290 PF04555 XhoI: Restriction end 21.7 2.7E+02 0.0059 19.0 4.9 55 39-96 121-178 (196)
291 PRK08815 GTP cyclohydrolase; P 21.6 2.9E+02 0.0064 21.0 5.0 48 63-121 294-341 (375)
292 cd06587 Glo_EDI_BRP_like This 21.4 1.2E+02 0.0027 16.7 2.7 20 102-121 9-29 (112)
293 PF01418 HTH_6: Helix-turn-hel 21.4 64 0.0014 18.0 1.3 25 91-115 37-61 (77)
294 PRK03681 hypA hydrogenase nick 21.4 1.4E+02 0.0031 18.2 2.9 39 71-111 5-49 (114)
295 PF06414 Zeta_toxin: Zeta toxi 21.0 2.6E+02 0.0057 18.5 5.4 43 73-117 78-123 (199)
296 COG3543 Uncharacterized conser 20.9 1.8E+02 0.0038 18.5 3.2 36 65-101 14-49 (135)
297 cd07249 MMCE Methylmalonyl-CoA 20.9 1E+02 0.0023 18.1 2.3 28 92-120 2-30 (128)
298 KOG0139 Short-chain acyl-CoA d 20.7 2.1E+02 0.0045 21.7 4.0 57 57-116 81-137 (398)
299 PF13530 SCP2_2: Sterol carrie 20.7 2.8E+02 0.0062 18.8 10.5 78 14-100 8-90 (218)
300 cd04591 CBS_pair_EriC_assoc_eu 20.4 1.9E+02 0.0041 16.6 3.7 17 30-46 84-100 (105)
301 cd04620 CBS_pair_7 The CBS dom 20.3 1.9E+02 0.0041 16.6 3.3 18 29-46 93-110 (115)
No 1
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.93 E-value=1.5e-24 Score=144.60 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=110.1
Q ss_pred hHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcce
Q 043366 14 DGINFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQR 93 (145)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~ 93 (145)
+..+++......+....|++..+|++||++++....... ..++++++|+|+|||+|+|++++..+++++++.. ++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~--~~~~~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~-~~~r 119 (186)
T PRK15130 43 ELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVH--RRAEFQIIISPEYQGKGLATRAAKLAMDYGFTVL-NLYK 119 (186)
T ss_pred HHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCC--CeEEEEEEECHHHcCCCHHHHHHHHHHHHHhhcC-CceE
Confidence 344556555444455677788899999999998765432 3478899999999999999999999999999887 9999
Q ss_pred EEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEeccCcc
Q 043366 94 LEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTDH 143 (145)
Q Consensus 94 i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~~~ 143 (145)
+.+.|...|.+|+++|+|+||+.++..++.+..+|++.|.+.|++++++|
T Consensus 120 v~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~~~~~~~~~~~ 169 (186)
T PRK15130 120 LYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNTIRMCIFQHQY 169 (186)
T ss_pred EEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEEEEEEeeHHHH
Confidence 99999999999999999999999999998888899999999999999987
No 2
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.93 E-value=3.2e-24 Score=142.26 Aligned_cols=126 Identities=24% Similarity=0.293 Sum_probs=109.3
Q ss_pred hhHHHHHHhhhc---CCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCC
Q 043366 13 EDGINFFKNKVI---NNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWP 89 (145)
Q Consensus 13 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~ 89 (145)
++.++|++.... ......+++..+|++||++++....... ..+++|++|+|+|||+|+|++++.++++++++..
T Consensus 49 ~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~~--~~~~ig~~i~~~~~g~G~~tea~~~l~~~~~~~~- 125 (179)
T PRK10151 49 EDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIEPLN--KTAYIGYWLDESHQGQGIISQALQALIHHYAQSG- 125 (179)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeeccCC--CceEEEEEEChhhcCCcHHHHHHHHHHHHHHhhC-
Confidence 777888886532 2123467777899999999998765442 3489999999999999999999999999999887
Q ss_pred CcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEeccC
Q 043366 90 HLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLST 141 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~ 141 (145)
+++++.+.+.++|.+|+++++|+||+.+++.++....+|.+.|.+.|+++..
T Consensus 126 ~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~~g~~~D~~~~~~~~~ 177 (179)
T PRK10151 126 ELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYLNGAYDDVNLYARIID 177 (179)
T ss_pred CccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEECCEEEEEEEEEEeec
Confidence 8999999999999999999999999999999999888999999999998764
No 3
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.93 E-value=6.4e-24 Score=142.45 Aligned_cols=126 Identities=20% Similarity=0.329 Sum_probs=106.5
Q ss_pred HHHHhhhcCCCCceEEEEe--CCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceE
Q 043366 17 NFFKNKVINNHPWFKAICL--GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRL 94 (145)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i 94 (145)
.++......+....|++.. ++++||.+++....... ...+++|++|.|++||+|+|++++..+++++++.+ +++++
T Consensus 64 ~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~~~~~-~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l-~l~~i 141 (194)
T PRK10809 64 GMINEFHKQGSAFYFALLDPDEKEIIGVANFSNVVRGS-FHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQ-HMHRI 141 (194)
T ss_pred HHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEeecCCC-eeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcC-CceEE
Confidence 3444433343444566654 68999999998765422 34589999999999999999999999999999988 99999
Q ss_pred EEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEeccCccc
Q 043366 95 EATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTDHK 144 (145)
Q Consensus 95 ~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 144 (145)
.+.|.++|.+|+++|+|+||+.++..++....+|++.|.+.|++++.+|.
T Consensus 142 ~~~v~~~N~~S~~l~ek~Gf~~~g~~~~~~~~~g~~~d~~~~~~~~~~~~ 191 (194)
T PRK10809 142 MANYMPHNKRSGDLLARLGFEKEGYAKDYLLIDGQWRDHVLTALTTPEWT 191 (194)
T ss_pred EEEeeCCCHHHHHHHHHCCCcEEeeeccccccCCeEEEEEEeeeehhhhh
Confidence 99999999999999999999999999988878899999999999999885
No 4
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.92 E-value=3.8e-23 Score=134.64 Aligned_cols=124 Identities=21% Similarity=0.267 Sum_probs=102.0
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEE
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLE 95 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~ 95 (145)
..|............+++..+|++||++++.........+.++++++|+|++||+|+|++++..+++++++.. +++++.
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~-~~~~i~ 117 (162)
T PRK10140 39 HMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWL-RVDRIE 117 (162)
T ss_pred HHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhhC-CccEEE
Confidence 3444433333334567777799999999998654321133477899999999999999999999999998856 899999
Q ss_pred EEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEecc
Q 043366 96 ATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLS 140 (145)
Q Consensus 96 ~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~ 140 (145)
+.+.++|.+|++||+|+||+..+..+.+...+|.+.|...|++++
T Consensus 118 l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~d~~~~~~~~ 162 (162)
T PRK10140 118 LTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMARVK 162 (162)
T ss_pred EEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEEEEEEEEecC
Confidence 999999999999999999999999998888889999999998764
No 5
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.91 E-value=4.7e-23 Score=133.56 Aligned_cols=133 Identities=23% Similarity=0.284 Sum_probs=112.4
Q ss_pred CcccccccCCCc----hhHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHH
Q 043366 1 DDQVTRFCTWES----EDGINFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRA 76 (145)
Q Consensus 1 d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l 76 (145)
||++++|+...+ ++.+.|++.....+....+++..+|++||++++...... ....++|+++.|.+| +|+|+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~--~~~~~~g~~~~~~~~-~G~g~~~ 96 (156)
T TIGR03585 20 HPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLV--HKSAFWGIYANPFCK-PGVGSVL 96 (156)
T ss_pred CHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChh--hCeEEEEEEeChhhh-cCchHHH
Confidence 456667653222 777888888776545567777889999999999876643 234788988999999 9999999
Q ss_pred HHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEE
Q 043366 77 VKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFS 137 (145)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~ 137 (145)
+..+++++++.. +++++.+.|...|.+|+++|+|+||+.++..+++...+|.+.|++.|.
T Consensus 97 ~~~~~~~a~~~~-~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~~~ 156 (156)
T TIGR03585 97 EEAALEYAFEHL-GLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLMY 156 (156)
T ss_pred HHHHHHHHHhhC-CeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEEeC
Confidence 999999999877 999999999999999999999999999999999998999999999874
No 6
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.89 E-value=2.9e-21 Score=125.05 Aligned_cols=120 Identities=23% Similarity=0.295 Sum_probs=103.1
Q ss_pred hhHHHHHHhhhcCCCCceEEEEe-CCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCc
Q 043366 13 EDGINFFKNKVINNHPWFKAICL-GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHL 91 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~ 91 (145)
+..+.|++.....+....+.+.. +|++||++.+...... ...++++++|.+++|++|+|+.|+..++++|++.. ++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~--~~~~~~~~~v~~~~~~~gig~~l~~~l~~~af~~~-~~ 111 (155)
T PF13420_consen 35 ESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPY--NHTAELSIYVSPDYRGKGIGRKLLDELIEYAFKEL-GI 111 (155)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSG--TTEEEEEEEEEGGGTTSSHHHHHHHHHHHHH-HHT-T-
T ss_pred HHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeecc--CCEEEEeeEEChhHCCCcHHHHHHHHHHHHhhhcc-Ce
Confidence 66788888775333566777776 9999999999988764 46689999999999999999999999999996666 99
Q ss_pred ceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEE
Q 043366 92 QRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVM 135 (145)
Q Consensus 92 ~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~ 135 (145)
+++.+.|.+.|.+|++||+++||+.+++.+++...+|.+.|+++
T Consensus 112 ~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~~~y~D~~~ 155 (155)
T PF13420_consen 112 HKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFINGKYYDVVW 155 (155)
T ss_dssp CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEECCeEEEeEC
Confidence 99999999999999999999999999999999999999999864
No 7
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.7e-21 Score=128.99 Aligned_cols=130 Identities=35% Similarity=0.472 Sum_probs=108.8
Q ss_pred hhHHHHHHhhhcCCCCceEEEEe--C--CEEEEEEEEeeCCC-CCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 13 EDGINFFKNKVINNHPWFKAICL--G--NKPIGAILVTPNSG-DCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~vG~~~~~~~~~-~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
+....++...........|.+.. + +++||.+++..... .. ....++|+++.|+++|+|+|++++.++++++|..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~-~~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~ 127 (187)
T COG1670 49 EELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIGLSDIDRAAN-GDLAEIGYWLDPEYWGKGYATEALRALLDYAFEE 127 (187)
T ss_pred HHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEEEEEeccccc-cceEEEEEEEChHHhcCchHHHHHHHHHHHhhhh
Confidence 44455555544443444444443 3 49999999998763 21 3459999999999999999999999999999998
Q ss_pred CCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEeccCccc
Q 043366 88 WPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTDHK 144 (145)
Q Consensus 88 ~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 144 (145)
+ +++++.+.|.+.|.+|+++++|+||+.++..+.....+|.+.|.+.|++++++|.
T Consensus 128 ~-~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~~~~~g~~~d~~~~~~~~~e~~ 183 (187)
T COG1670 128 L-GLHRIEATVDPENEASIRVYEKLGFRLEGELRQHEFIKGRWRDTVLYSLLRDEWE 183 (187)
T ss_pred c-CceEEEEEecCCCHHHHHHHHHcCChhhhhhhhceeeCCeeeeEEEEEEechhhh
Confidence 7 9999999999999999999999999999999988778899999999999999986
No 8
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.85 E-value=9e-20 Score=116.23 Aligned_cols=112 Identities=31% Similarity=0.495 Sum_probs=88.4
Q ss_pred CcccccccCCCc-----hhHHHHHHhhhc---CCCCceEEEEe--CCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCC
Q 043366 1 DDQVTRFCTWES-----EDGINFFKNKVI---NNHPWFKAICL--GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGK 70 (145)
Q Consensus 1 d~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~--~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~ 70 (145)
||++.+|+++.+ ++..+|+++... ......|++.. ++++||++++...... ...+++|++|.|++||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~--~~~~eig~~i~~~~~g~ 98 (142)
T PF13302_consen 21 DPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKN--NNWAEIGYWIGPDYRGK 98 (142)
T ss_dssp TTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETT--TTEEEEEEEEEGGGTTS
T ss_pred CHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccC--CCccccccchhHHHHhh
Confidence 578888864443 777888874222 11245566666 4589999999654333 35599999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcE
Q 043366 71 GIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115 (145)
Q Consensus 71 G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~ 115 (145)
|+|++++..+++++++.. ++.++.+.|.++|.+|+++++|+||+
T Consensus 99 G~~~~~~~~~~~~~~~~~-~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 99 GYGTEALKLLLDWAFEEL-GLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp SHHHHHHHHHHHHHHHTS-TSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred hHHHHHHHHHHHHHHhcC-CcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 999999999999998887 99999999999999999999999996
No 9
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=3.6e-19 Score=115.36 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=109.6
Q ss_pred hhHHHHHHhhhcCCCCceEEEEe-CCEEEEEEEEeeCCCCC-CCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCC
Q 043366 13 EDGINFFKNKVINNHPWFKAICL-GNKPIGAILVTPNSGDC-NKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPH 90 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~-~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~ 90 (145)
+...+|+...... ....+++.. +|+++|++.+.+..... -..+++.+++|+|++||+|+|++|++++++.+... |
T Consensus 38 ~~~~~~~~~~~~~-g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~--g 114 (169)
T COG1247 38 EERAAWFSGRTRD-GYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARAL--G 114 (169)
T ss_pred HHHHHHHHhcccC-CceEEEEEcCCCeEEEEEEeeeccCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhC--C
Confidence 7777788876665 334444544 59999999999876654 34568889999999999999999999999999777 9
Q ss_pred cceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEeccCcc
Q 043366 91 LQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTDH 143 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~~~ 143 (145)
...+.+.+..+|.+|+++++++||+.+|..++.....|.+.|+++|++..++.
T Consensus 115 ~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~~~~l~~~ 167 (169)
T COG1247 115 VRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLMQLLLEEG 167 (169)
T ss_pred eEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeeeehhhccc
Confidence 99999999999999999999999999999999888889999999999876653
No 10
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.81 E-value=1.7e-18 Score=111.18 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=87.7
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKV 108 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 108 (145)
..+++..++++||++.+....... ...+++|+|++||+|+|++++..+++.+++. ++..+.+.|...|.+|+++
T Consensus 41 ~~~~~~~~~~~vG~~~~~~~~~~~----~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~~~~~~~~~~N~~a~~~ 114 (146)
T PRK09491 41 LNLKLTVNGQMAAFAITQVVLDEA----TLFNIAVDPDYQRQGLGRALLEHLIDELEKR--GVATLWLEVRASNAAAIAL 114 (146)
T ss_pred eEEEEEECCeEEEEEEEEeecCce----EEEEEEECHHHccCCHHHHHHHHHHHHHHHC--CCcEEEEEEccCCHHHHHH
Confidence 345566799999999987654331 3337889999999999999999999999765 9999999999999999999
Q ss_pred HHHcCcEEEEEEEeeEEe-CCeEeEEEEEEec
Q 043366 109 LQKAGFKREGVLRKYITL-KGKATDVVMFSLL 139 (145)
Q Consensus 109 ~~k~Gf~~~~~~~~~~~~-~g~~~~~~~~~l~ 139 (145)
|+|+||+..+..+.+... +| +.|.+.|++.
T Consensus 115 y~k~Gf~~~~~~~~~~~~~~~-~~d~~~~~~~ 145 (146)
T PRK09491 115 YESLGFNEVTIRRNYYPTADG-REDAIIMALP 145 (146)
T ss_pred HHHcCCEEeeeeeccccCCCC-ceeEEEEecc
Confidence 999999999988877654 56 9999999874
No 11
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.80 E-value=1.8e-18 Score=121.34 Aligned_cols=116 Identities=11% Similarity=0.200 Sum_probs=98.0
Q ss_pred HHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEE
Q 043366 17 NFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLE 95 (145)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~ 95 (145)
+++.+.+.. ...++++..+|++||++++...... ..+++ .++|+|+|||+|+|++|+..+++++++. ++..+.
T Consensus 148 ~~l~~~~~~-~~~~~v~~~~g~iVG~~~~~~~~~~---~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~--g~~~l~ 221 (266)
T TIGR03827 148 AYLLETMKS-NVVYFGVEDGGKIIALASAEMDPEN---GNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEK--GIRTAY 221 (266)
T ss_pred HHHHHHhcC-CcEEEEEEECCEEEEEEEEecCCCC---CcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCcEEE
Confidence 455555543 4556777789999999987533322 23778 5889999999999999999999999876 999999
Q ss_pred EEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEe
Q 043366 96 ATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSL 138 (145)
Q Consensus 96 ~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l 138 (145)
+.+...|.+|+++|+|+||+..|+.++....+|.+.|+.+|..
T Consensus 222 ~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k 264 (266)
T TIGR03827 222 TIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYK 264 (266)
T ss_pred eehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeee
Confidence 9999999999999999999999999999999999999998864
No 12
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.79 E-value=3.1e-18 Score=107.52 Aligned_cols=91 Identities=23% Similarity=0.336 Sum_probs=78.3
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHH
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLAS 105 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a 105 (145)
...++++..++++||++.+...... ..+ +++|+|++||+|+|++|+..++++++.. ++.++.+.+.+.|.+|
T Consensus 30 ~~~~~~~~~~~~~vg~~~~~~~~~~-----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~~i~~~~~~~n~~~ 102 (131)
T TIGR01575 30 HLCYLLARIGGKVVGYAGVQIVLDE-----AHILNIAVKPEYQGQGIGRALLRELIDEAKGR--GVNEIFLEVRVSNIAA 102 (131)
T ss_pred CceEEEEecCCeEEEEEEEEecCCC-----eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCeEEEEEecccHHH
Confidence 3445556669999999998765433 444 7899999999999999999999999876 8999999999999999
Q ss_pred HHHHHHcCcEEEEEEEeeE
Q 043366 106 QKVLQKAGFKREGVLRKYI 124 (145)
Q Consensus 106 ~~~~~k~Gf~~~~~~~~~~ 124 (145)
++||+|+||+.++..+++.
T Consensus 103 ~~~y~~~Gf~~~~~~~~~~ 121 (131)
T TIGR01575 103 QALYKKLGFNEIAIRRNYY 121 (131)
T ss_pred HHHHHHcCCCccccccccc
Confidence 9999999999999888765
No 13
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.79 E-value=3.4e-18 Score=109.33 Aligned_cols=99 Identities=10% Similarity=0.117 Sum_probs=78.5
Q ss_pred HHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCC-CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEE
Q 043366 18 FFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDC-NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLE 95 (145)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~-~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~ 95 (145)
.+.+.+..+...++++..++++||++.+....... ....+++ .++|+|++||+|+|+.|+..++++|++. ++..+.
T Consensus 37 ~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~--~~~~i~ 114 (144)
T PRK10146 37 GFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQA--GAEMTE 114 (144)
T ss_pred HHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHc--CCcEEE
Confidence 33344444345566777899999999987543211 1112566 6899999999999999999999999877 999999
Q ss_pred EEecCCCHHHHHHHHHcCcEEEE
Q 043366 96 ATVDVDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 96 ~~~~~~N~~a~~~~~k~Gf~~~~ 118 (145)
+.+...|.+|++||+|+||+..+
T Consensus 115 l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 115 LSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred EecCCCchHHHHHHHHcCCchhh
Confidence 99999999999999999998765
No 14
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.77 E-value=7.9e-17 Score=102.02 Aligned_cols=104 Identities=22% Similarity=0.352 Sum_probs=83.4
Q ss_pred ceEEEEeC-CEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 29 WFKAICLG-NKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 29 ~~~~~~~~-~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
++++..++ +..||.+......... ...++| .+.|+++|||+|||++|++.+++.++.+ |++.+.++|...|.+|.
T Consensus 57 ~~~~a~d~~~~~VGai~ck~~~~r~-~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~--g~~eVvLeTe~~n~~A~ 133 (165)
T KOG3139|consen 57 FCFLALDEKGDTVGAIVCKLDTHRN-TLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSR--GYSEVVLETEVTNLSAL 133 (165)
T ss_pred EEEEEEcCCCceEEEEEEeccccCC-cceEEEEEEEechhhccccHHHHHHHHHHHHHHHC--CCcEEEEeccccchHHH
Confidence 34444443 3379998887665543 345888 5789999999999999999999999888 99999999999999999
Q ss_pred HHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEe
Q 043366 107 KVLQKAGFKREGVLRKYITLKGKATDVVMFSL 138 (145)
Q Consensus 107 ~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l 138 (145)
++|+++||+..++...++. +|. |...+.|
T Consensus 134 ~LY~sLGF~r~~r~~~YYl-ng~--dA~rl~L 162 (165)
T KOG3139|consen 134 RLYESLGFKRDKRLFRYYL-NGM--DALRLKL 162 (165)
T ss_pred HHHHhcCceEecceeEEEE-CCc--ceEEEEe
Confidence 9999999999999887764 443 4444443
No 15
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.76 E-value=1.2e-16 Score=103.27 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=78.8
Q ss_pred CCCCceEEEEeCCEEEEEEEEeeCCCCC--CCceeEEEE-EECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCC
Q 043366 25 NNHPWFKAICLGNKPIGAILVTPNSGDC--NKCRAILGY-VVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVD 101 (145)
Q Consensus 25 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~~~i~~-~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 101 (145)
.+....+++..+|+++|++.+....... ......++. ++.+++||+|+|+.++.++++++++.. ++..+.+.+.++
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 123 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDP-GVDRIVLDPHED 123 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTST-T--EEEEEEBTT
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCC-CCCEEEEecCcC
Confidence 4456778888999999999997532221 123355654 468999999999999999999999875 899999999999
Q ss_pred CHHHHHHHHHcCcEEEEEEEeeEEeCCeEeE
Q 043366 102 NLASQKVLQKAGFKREGVLRKYITLKGKATD 132 (145)
Q Consensus 102 N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~ 132 (145)
|.+|+++|+|+||+.+++.. +++....
T Consensus 124 N~~~~~~~~k~GF~~~g~~~----~~~~~~~ 150 (152)
T PF13523_consen 124 NTRAIRLYEKAGFRKVGEFE----FPDKPAH 150 (152)
T ss_dssp -HHHHHHHHHTT-EEEEEEE----ESSEEEE
T ss_pred CHHHHHHHHHcCCEEeeEEE----CCCCeec
Confidence 99999999999999999764 3555443
No 16
>PRK03624 putative acetyltransferase; Provisional
Probab=99.76 E-value=4.4e-17 Score=103.25 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=76.2
Q ss_pred HHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEE
Q 043366 19 FKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEAT 97 (145)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~ 97 (145)
+.+....+...++++..++++||++.+...... ..+ .++|+|+|||+|+|++++..+++++++. +++.+.+.
T Consensus 36 ~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~-----~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~--~~~~~~~~ 108 (140)
T PRK03624 36 IERKLNHDPSLFLVAEVGGEVVGTVMGGYDGHR-----GWAYYLAVHPDFRGRGIGRALVARLEKKLIAR--GCPKINLQ 108 (140)
T ss_pred HHHHhcCCCceEEEEEcCCcEEEEEEeeccCCC-----ceEEEEEECHHHhCCCHHHHHHHHHHHHHHHC--CCCEEEEE
Confidence 333333334566777779999999987643322 334 6789999999999999999999999876 99999999
Q ss_pred ecCCCHHHHHHHHHcCcEEEEE
Q 043366 98 VDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 98 ~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
+.++|.+|+++|+|+||+..+.
T Consensus 109 ~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 109 VREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred EecCcHHHHHHHHHcCCccccE
Confidence 9999999999999999998764
No 17
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.76 E-value=5.3e-17 Score=108.78 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=71.9
Q ss_pred EEeCCEEEEEEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHH
Q 043366 33 ICLGNKPIGAILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQK 111 (145)
Q Consensus 33 ~~~~~~~vG~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k 111 (145)
+..+|++||++.+....... ++++ ++|+|++||+|+|++|+..+++++++. |+.++.+.|.++|.+|++||+|
T Consensus 104 ~~~~g~iiG~i~l~~~~~~~----~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~--g~~~I~l~v~~~N~~A~~~Y~k 177 (191)
T TIGR02382 104 RDASGDPRGYVTLRELNDTD----ARIGLLAVFPGAQSRGIGAELMQTALNWCYAR--GLTRLRVATQMGNTAALRLYIR 177 (191)
T ss_pred EccCCeEEEEEEEEecCCCc----eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHH
Confidence 34489999999998765432 7786 558999999999999999999999865 9999999999999999999999
Q ss_pred cCcEEEEEE
Q 043366 112 AGFKREGVL 120 (145)
Q Consensus 112 ~Gf~~~~~~ 120 (145)
+||+.+++.
T Consensus 178 lGF~~~~~~ 186 (191)
T TIGR02382 178 SGANIESTA 186 (191)
T ss_pred cCCccccce
Confidence 999988864
No 18
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.75 E-value=4.3e-17 Score=94.84 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=70.4
Q ss_pred EeCCEEEEEEEEeeCCCCC-CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHH
Q 043366 34 CLGNKPIGAILVTPNSGDC-NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQK 111 (145)
Q Consensus 34 ~~~~~~vG~~~~~~~~~~~-~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k 111 (145)
+.+|++||++.+....... ....+.+ .++|+|+|||+|+|+.|+..+++++++. ++..+.+.+.++|.+++++|+|
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~--g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKR--GIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHT--TESEEEEEEETTGHHHHHHHHH
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhc--CccEEEEEEeCCCHHHHHHHHH
Confidence 5699999999999776641 0133666 7899999999999999999999999885 9999999999999999999999
Q ss_pred cCcE
Q 043366 112 AGFK 115 (145)
Q Consensus 112 ~Gf~ 115 (145)
+||+
T Consensus 80 ~Gf~ 83 (83)
T PF00583_consen 80 LGFE 83 (83)
T ss_dssp TTEE
T ss_pred cCCC
Confidence 9996
No 19
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.75 E-value=1.1e-16 Score=107.36 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=73.9
Q ss_pred ceEEEE-eCCEEEEEEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 29 WFKAIC-LGNKPIGAILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 29 ~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
..+++. .+|++||++.+...... ..+++ ++|+|++||+|+|++|+..+++++++. +++++.+.|..+|.+|+
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~----~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~--g~~~i~l~v~~~N~~a~ 175 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDT----DARIGLLAVFPGAQGRGIGARLMQAALNWCQAR--GLTRLRVATQMGNLAAL 175 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCC----ceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcHHHH
Confidence 344333 47899999999865433 27786 558999999999999999999999876 99999999999999999
Q ss_pred HHHHHcCcEEEEEEE
Q 043366 107 KVLQKAGFKREGVLR 121 (145)
Q Consensus 107 ~~~~k~Gf~~~~~~~ 121 (145)
+||+|+||+.+++..
T Consensus 176 ~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 176 RLYIRSGANIESTAY 190 (194)
T ss_pred HHHHHCCCeEeEEEe
Confidence 999999999998755
No 20
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.74 E-value=8.1e-17 Score=104.75 Aligned_cols=97 Identities=20% Similarity=0.162 Sum_probs=77.4
Q ss_pred CceEEEE-eCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHH
Q 043366 28 PWFKAIC-LGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLAS 105 (145)
Q Consensus 28 ~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a 105 (145)
...+++. .++++||++.+....... ....+ .++|+|++||+|+|++|+..++++++.. ++.++.+.|.++|.+|
T Consensus 39 ~~~~v~~~~~~~ivG~~~~~~~~~~~--~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~--~~~~i~~~v~~~N~~a 114 (157)
T TIGR02406 39 DTSIVAESEGGEIVGFVSGYLRPDRP--DVLFVWQVAVDPRARGKGLARRLLEALLERVACE--RVRHLETTITPDNQAS 114 (157)
T ss_pred CcEEEEEcCCCeEEEEEEEEecCCCC--CeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhC--CCCEEEEEEcCCCHHH
Confidence 3455555 478999999876444332 22445 7889999999999999999999999877 8899999999999999
Q ss_pred HHHHHHcCcEEEEEEEeeEEeCC
Q 043366 106 QKVLQKAGFKREGVLRKYITLKG 128 (145)
Q Consensus 106 ~~~~~k~Gf~~~~~~~~~~~~~g 128 (145)
+++|+|+||+......+...++|
T Consensus 115 ~~ly~k~G~~~~~~~~~~~~~~~ 137 (157)
T TIGR02406 115 RALFKALARRRGVHLIEEPFFDG 137 (157)
T ss_pred HHHHHHhCcccCCCeEeeccccc
Confidence 99999999988777666554443
No 21
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.71 E-value=3e-16 Score=101.15 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=76.2
Q ss_pred hhHHHHHHhhhcCC-CCceEEEEe--CCEEEEEEEEeeCCC--CCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhh
Q 043366 13 EDGINFFKNKVINN-HPWFKAICL--GNKPIGAILVTPNSG--DCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFD 86 (145)
Q Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~--~~~~vG~~~~~~~~~--~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~ 86 (145)
+...+++....... ....+++.. +|++||++.+..... ......+.+ .++|+|+|||+|+|++|+..++++|++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~ 116 (150)
T PLN02706 37 EEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARS 116 (150)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH
Confidence 66677777655532 234455555 689999998853211 110122344 478999999999999999999999987
Q ss_pred cCCCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 87 EWPHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 87 ~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
. +++++.+.|.++|. +||+|+||+.++.
T Consensus 117 ~--g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 117 A--GCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred c--CCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 6 99999999999995 5999999998874
No 22
>PHA01807 hypothetical protein
Probab=99.67 E-value=2.9e-15 Score=96.64 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=69.2
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-E---EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCC
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-G---YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDN 102 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~---~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N 102 (145)
....+++..+|++||++++...... +...+ + ++|+|+|||+|+|++|+..++++|++. |+..+.+++..+|
T Consensus 52 ~~~~lva~~dg~lvG~~~l~~~~~~---~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~--G~~~l~l~v~~~n 126 (153)
T PHA01807 52 DRTELLVFRDGKLAGIAVLVFEDDP---HVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEG--NLPLIAFSHREGE 126 (153)
T ss_pred CceEEEEEECCEEEEEEEEEcCCCc---ceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEecCCc
Confidence 4555667779999999999866533 22333 3 699999999999999999999999887 9999999999999
Q ss_pred HHHHHHHHHcC
Q 043366 103 LASQKVLQKAG 113 (145)
Q Consensus 103 ~~a~~~~~k~G 113 (145)
.+|++||++.-
T Consensus 127 ~~a~~~y~~~~ 137 (153)
T PHA01807 127 GRYTIHYRRVK 137 (153)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 23
>PTZ00330 acetyltransferase; Provisional
Probab=99.66 E-value=6.7e-15 Score=94.32 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=73.6
Q ss_pred hhHHHHHHhhhcCCC-CceEEEEeCCEEEEEEEEeeCCCC--CCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcC
Q 043366 13 EDGINFFKNKVINNH-PWFKAICLGNKPIGAILVTPNSGD--CNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEW 88 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~ 88 (145)
++...+......... ...+++..+|++||++.+...... .....+++ .++|+|++||+|+|++|++.+++++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~- 114 (147)
T PTZ00330 36 EELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSS- 114 (147)
T ss_pred hHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC-
Confidence 444555543322211 233444568999999998754321 11123456 6899999999999999999999999876
Q ss_pred CCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 89 PHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 89 ~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
++.++.+.+ |.+|++||+|+||+....
T Consensus 115 -~~~~l~l~~---n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 115 -GCYKVILDC---TEDMVAFYKKLGFRACER 141 (147)
T ss_pred -CCCEEEEec---ChHHHHHHHHCCCEEece
Confidence 888887765 889999999999998764
No 24
>PRK10514 putative acetyltransferase; Provisional
Probab=99.66 E-value=2.9e-15 Score=95.90 Aligned_cols=107 Identities=17% Similarity=0.266 Sum_probs=78.2
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCc
Q 043366 13 EDGINFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHL 91 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~ 91 (145)
+....++...... ....+++..++++||++.+.. ..+ +++|+|++||+|+|++|+..+++.+
T Consensus 36 ~~~~~~~~~~~~~-~~~~~~~~~~~~~iG~~~~~~---------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~------- 98 (145)
T PRK10514 36 AEIEELVRSFLPE-APLWVAVDERDQPVGFMLLSG---------GHMEALFVDPDVRGCGVGRMLVEHALSLH------- 98 (145)
T ss_pred HHHHHHHHHHhcc-CceEEEEecCCcEEEEEEEec---------CcEeEEEECHHhccCCHHHHHHHHHHHhc-------
Confidence 4444555544332 233333445899999998852 112 7899999999999999988888653
Q ss_pred ceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEe
Q 043366 92 QRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSL 138 (145)
Q Consensus 92 ~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l 138 (145)
.++.+.+...|.+|++||+|+||+..+..... ..|...+.+.|.-
T Consensus 99 ~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~~--~~~~~~~~~~~~~ 143 (145)
T PRK10514 99 PELTTDVNEQNEQAVGFYKKMGFKVTGRSEVD--DQGRPYPLLHLAY 143 (145)
T ss_pred cccEEEeecCCHHHHHHHHHCCCEEecccccC--CCCCccceEEEEe
Confidence 34678889999999999999999999876633 4677778777753
No 25
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.66 E-value=2e-15 Score=96.75 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=86.4
Q ss_pred hhHHHHHHhhhcC-----------CCCceEEEEeCCEEEEEEEEeeCCCCC-CCceeEEEEEECcCccCCCHHHHHHHHH
Q 043366 13 EDGINFFKNKVIN-----------NHPWFKAICLGNKPIGAILVTPNSGDC-NKCRAILGYVVASKYWGKGIATRAVKMV 80 (145)
Q Consensus 13 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~vG~~~~~~~~~~~-~~~~~~i~~~v~~~~rg~G~g~~l~~~~ 80 (145)
+....|++..... +...+|++..++++||++.+...-... ....+.||+.|.|+.||+|+|++|++.+
T Consensus 43 ~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~ 122 (174)
T COG3981 43 EDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLA 122 (174)
T ss_pred ccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHH
Confidence 4556777763332 123456777789999999998765433 1224899999999999999999999999
Q ss_pred HHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEE
Q 043366 81 TGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
++.|++. |++++.++|+.+|.+|.+..+++|-..+.+..
T Consensus 123 L~~ar~l--gi~~Vlvtcd~dN~ASrkvI~~NGGile~~~~ 161 (174)
T COG3981 123 LEKAREL--GIKKVLVTCDKDNIASRKVIEANGGILENEFF 161 (174)
T ss_pred HHHHHHc--CCCeEEEEeCCCCchhhHHHHhcCCEEeEEEc
Confidence 9999776 99999999999999999999999988876544
No 26
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.66 E-value=4.6e-15 Score=97.81 Aligned_cols=108 Identities=18% Similarity=0.278 Sum_probs=80.9
Q ss_pred HHHHhhhcCCCCceEEEEe---CC----EEEEEEEEeeCCCCC-CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 17 NFFKNKVINNHPWFKAICL---GN----KPIGAILVTPNSGDC-NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~---~~----~~vG~~~~~~~~~~~-~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
..+...+.......++... ++ +++|++......... ....++| .+.|+|+|||+|+|++|+..+++.+.+.
T Consensus 44 ~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~ 123 (177)
T COG0456 44 EYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRER 123 (177)
T ss_pred HHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhc
Confidence 4444444443444444444 23 599999996333311 0012566 7999999999999999999999999887
Q ss_pred CCCc-ceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEe
Q 043366 88 WPHL-QRLEATVDVDNLASQKVLQKAGFKREGVLRKYITL 126 (145)
Q Consensus 88 ~~~~-~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~ 126 (145)
+. ..+.+.|.++|.+|++||+|+||+..+...+++..
T Consensus 124 --~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~~ 161 (177)
T COG0456 124 --GLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYAD 161 (177)
T ss_pred --CCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhccC
Confidence 65 89999999999999999999999999998876633
No 27
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.65 E-value=9.6e-15 Score=90.10 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=67.1
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceE
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRL 94 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i 94 (145)
.+.+.+.+..+...++++..++++||++.+. .. ..+ .++|+|++||+|+|++|+..+++++ +. ++..+
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~---~~-----~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~-~~--~~~~l 100 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE---PD-----GEISHLYVLPEYRGRGIGRALLDAAEKEA-KD--GIRRL 100 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEETTEEEEEEEEE---TC-----EEEEEEEE-GGGTTSSHHHHHHHHHHHHH-TT--TCEEE
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEEc---CC-----CeEEEEEEChhhcCCcHHHHHHHHHHHHH-Hc--CCcEE
Confidence 5556666665456788888999999999986 22 346 6889999999999999999999998 44 67777
Q ss_pred EEEecCCCHHHHHHHHHcCc
Q 043366 95 EATVDVDNLASQKVLQKAGF 114 (145)
Q Consensus 95 ~~~~~~~N~~a~~~~~k~Gf 114 (145)
.+. .|..+.+||+++||
T Consensus 101 ~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 101 TVE---ANERARRFYRKLGF 117 (117)
T ss_dssp EEE---C-HHHHHHHHHTT-
T ss_pred EEE---eCHHHHHHHHhCCC
Confidence 766 79999999999998
No 28
>PHA00673 acetyltransferase domain containing protein
Probab=99.64 E-value=1.1e-14 Score=93.29 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCC--CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEE
Q 043366 19 FKNKVINNHPWFKAICLGNKPIGAILVTPNSGDC--NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLE 95 (145)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~ 95 (145)
+..+..+++...++.+++|++||++.+...+... +...+.| +++|+|++||+|+|++|+..++++|++. |+..++
T Consensus 46 f~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~--Gc~~ly 123 (154)
T PHA00673 46 YAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDL--GATGLY 123 (154)
T ss_pred HHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHC--CCCEEE
Confidence 6667777778888888899999999888766443 2234677 7899999999999999999999999888 999999
Q ss_pred EEecCCCHHHHHHHHHcCcEEEEE
Q 043366 96 ATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 96 ~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
++..++ .....||.+.|++.+.+
T Consensus 124 is~~p~-~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 124 VSGPTE-GRLVQLLPAAGYRETNR 146 (154)
T ss_pred EecCCC-ccchHHHHhCCchhhch
Confidence 986663 46789999999998753
No 29
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.64 E-value=1.2e-14 Score=83.94 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=62.2
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
..++++.+++++||++.+...+.. ..+ .++|+|++||+|+|+.|+..+.+.+.. ..+.+.+ |+.+.
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~~-----~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~-----~~i~l~~---~~~~~ 69 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNEDF-----AYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS-----KKIFLFT---NPAAI 69 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTE-----EEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC-----SEEEEEE---EHHHH
T ss_pred cEEEEEEECCEEEEEEEEEEcCCE-----EEEEEEEECHHHcCCCHHHHHHHHHHHHcCC-----CcEEEEE---cHHHH
Confidence 457788889999999999776653 677 688999999999999999999888732 3466655 67899
Q ss_pred HHHHHcCcEE
Q 043366 107 KVLQKAGFKR 116 (145)
Q Consensus 107 ~~~~k~Gf~~ 116 (145)
.||+|+||++
T Consensus 70 ~fY~~~GF~~ 79 (79)
T PF13508_consen 70 KFYEKLGFEE 79 (79)
T ss_dssp HHHHHTTEEE
T ss_pred HHHHHCcCCC
Confidence 9999999974
No 30
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.60 E-value=2.8e-14 Score=101.25 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=70.1
Q ss_pred eEEEEe--CCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 30 FKAICL--GNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 30 ~~~~~~--~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
.+++.. +|++||++.+...... ....++ .+.|+|+|||+|+|++|+..+++++++. ++..+.+.+.++|.+|+
T Consensus 200 ~~~a~~~~~~~~vG~~~~~~~~~~--~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~--g~~~v~l~v~~~N~~a~ 275 (292)
T TIGR03448 200 LFLAFDDAPGELLGFHWTKVHPDE--PALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAAR--GLPAVMLYVEADNEAAV 275 (292)
T ss_pred eEEEEECCCCcEEEEEEEEecCCC--CceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEEeCCCHHHH
Confidence 444555 6899999765543322 122555 3679999999999999999999999886 89999999999999999
Q ss_pred HHHHHcCcEEEEE
Q 043366 107 KVLQKAGFKREGV 119 (145)
Q Consensus 107 ~~~~k~Gf~~~~~ 119 (145)
+||+|+||+..+.
T Consensus 276 ~~y~k~GF~~~~~ 288 (292)
T TIGR03448 276 RTYEKLGFTVAEV 288 (292)
T ss_pred HHHHHcCCEEccc
Confidence 9999999998765
No 31
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.60 E-value=3.9e-14 Score=108.07 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=73.9
Q ss_pred CCceEEEEe--CCEEEEEEEEeeCCC--CCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCC
Q 043366 27 HPWFKAICL--GNKPIGAILVTPNSG--DCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVD 101 (145)
Q Consensus 27 ~~~~~~~~~--~~~~vG~~~~~~~~~--~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 101 (145)
...++++.. +|++||++.+..... .+.....++ .++|+|+|||+|+|++|+..+++++++. |+..+.+.|..+
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~--G~~~i~L~V~~~ 199 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSR--GCAYMDLSVMHD 199 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEEcCC
Confidence 445566654 699999997643211 111122444 7999999999999999999999999776 999999999999
Q ss_pred CHHHHHHHHHcCcEEEEEEE
Q 043366 102 NLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 102 N~~a~~~~~k~Gf~~~~~~~ 121 (145)
|.+|++||+|+||+.++...
T Consensus 200 N~~Ai~fY~klGf~~~~~y~ 219 (547)
T TIGR03103 200 NEQAIALYEKLGFRRIPVFA 219 (547)
T ss_pred CHHHHHHHHHCCCEEeeEEE
Confidence 99999999999999887644
No 32
>PRK10314 putative acyltransferase; Provisional
Probab=99.60 E-value=1.7e-14 Score=93.46 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=69.4
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
...+++..++++||++.+...... .....+ .++|+|+|||+|+|++|+..+++++.+.. +...+.+.+ |..+.
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~--~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~-~~~~i~L~a---~~~a~ 121 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDD--LEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHW-PDKPVYLGA---QAHLQ 121 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCC--CCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHC-CCCcEEEeh---HHHHH
Confidence 445566679999999999875432 123778 48999999999999999999999997764 667777765 56788
Q ss_pred HHHHHcCcEEEEE
Q 043366 107 KVLQKAGFKREGV 119 (145)
Q Consensus 107 ~~~~k~Gf~~~~~ 119 (145)
.||+|+||+.++.
T Consensus 122 ~fY~k~GF~~~g~ 134 (153)
T PRK10314 122 NFYQSFGFIPVTE 134 (153)
T ss_pred HHHHHCCCEECCC
Confidence 9999999999885
No 33
>PRK10562 putative acetyltransferase; Provisional
Probab=99.60 E-value=4.4e-14 Score=90.57 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=72.9
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHH
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLAS 105 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a 105 (145)
....+++..+|++||++++... ..+ .++|+|++||+|+|+.|+..+++. +..+.+.+...|.+|
T Consensus 47 ~~~~~v~~~~~~~iG~~~~~~~--------~~i~~~~v~~~~rg~G~g~~ll~~~~~~-------~~~~~~~v~~~N~~s 111 (145)
T PRK10562 47 AAQTWVWEEDGKLLGFVSVLEG--------RFVGALFVAPKAVRRGIGKALMQHVQQR-------YPHLSLEVYQKNQRA 111 (145)
T ss_pred cccEEEEEECCEEEEEEEEeec--------cEEEEEEECHHHcCCCHHHHHHHHHHhh-------CCeEEEEEEcCChHH
Confidence 3456677788999999998532 345 488999999999999988877653 345788889999999
Q ss_pred HHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEeccC
Q 043366 106 QKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLST 141 (145)
Q Consensus 106 ~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~ 141 (145)
++||+|+||+.++... ..+...+..+|+.-.+
T Consensus 112 ~~~y~k~Gf~~~~~~~----~~~~~~~~~~~~~~~~ 143 (145)
T PRK10562 112 VNFYHAQGFRIVDSAW----QEETQHPTWIMSWQAD 143 (145)
T ss_pred HHHHHHCCCEEccccc----cCCCCCEEEEEEecCC
Confidence 9999999999998532 2333457777766544
No 34
>PRK09831 putative acyltransferase; Provisional
Probab=99.60 E-value=3.6e-14 Score=91.26 Aligned_cols=92 Identities=17% Similarity=0.284 Sum_probs=72.7
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
..++++..+|++||++.+.. ..+ .++|+|++||+|+|++|+..+++.+.. + .+.. |..++
T Consensus 53 ~~~~v~~~~~~iiG~~~~~~---------~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-------l--~v~~-~~~a~ 113 (147)
T PRK09831 53 SQVRVAVINAQPVGFITCIE---------HYIDMLFVDPEYTRRGVASALLKPLIKSESE-------L--TVDA-SITAK 113 (147)
T ss_pred CceEEEEECCEEEEEEEehh---------ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-------e--Eeec-chhhH
Confidence 34666777999999998752 223 688999999999999999999987632 2 2332 57899
Q ss_pred HHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEecc
Q 043366 107 KVLQKAGFKREGVLRKYITLKGKATDVVMFSLLS 140 (145)
Q Consensus 107 ~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~ 140 (145)
+||+|+||+.++..+ ...+|.+.+.+.|.+..
T Consensus 114 ~~Y~k~Gf~~~g~~~--~~~~g~~~~~~~m~~~~ 145 (147)
T PRK09831 114 PFFERYGFQTVKQQR--VECRGEWFINFYMRYKP 145 (147)
T ss_pred HHHHHCCCEEeeccc--eEECCEEEEeeEEEecC
Confidence 999999999999876 33578899999998753
No 35
>PRK07757 acetyltransferase; Provisional
Probab=99.57 E-value=6.1e-14 Score=90.50 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=66.2
Q ss_pred eEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHH
Q 043366 30 FKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKV 108 (145)
Q Consensus 30 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 108 (145)
++++..+|++||++.+....... .++ +++|+|++||+|+|++|+..+++++++. ++..+.+.+. +.+|
T Consensus 43 ~~i~~~~~~lvG~~~l~~~~~~~----~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~--g~~~i~~~~~-----~~~~ 111 (152)
T PRK07757 43 FYVAEEEGEIVGCCALHILWEDL----AEIRSLAVSEDYRGQGIGRMLVEACLEEAREL--GVKRVFALTY-----QPEF 111 (152)
T ss_pred EEEEEECCEEEEEEEEEeccCCc----eEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCCeEEEEeC-----cHHH
Confidence 56667799999999998654432 677 7899999999999999999999999765 8988876653 4689
Q ss_pred HHHcCcEEEEE
Q 043366 109 LQKAGFKREGV 119 (145)
Q Consensus 109 ~~k~Gf~~~~~ 119 (145)
|+|+||+..+.
T Consensus 112 Y~k~GF~~~~~ 122 (152)
T PRK07757 112 FEKLGFREVDK 122 (152)
T ss_pred HHHCCCEEccc
Confidence 99999999875
No 36
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.55 E-value=2.5e-13 Score=79.64 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=49.8
Q ss_pred eEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 57 AIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 57 ~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
+.+ ++++.|+|||+|+|+.++..+.+.+.++ |.. ..+.+..+|.+|+++|+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~--g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLER--GKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT--TSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 455 7889999999999999999999999886 554 56779999999999999999998854
No 37
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.53 E-value=5.9e-13 Score=83.76 Aligned_cols=84 Identities=25% Similarity=0.188 Sum_probs=71.9
Q ss_pred CCEEEEEEEEeeCCCC-CCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcC
Q 043366 36 GNKPIGAILVTPNSGD-CNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAG 113 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~-~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~G 113 (145)
+++++|++.+...-.. .......+ .++|.|+|||+|+|+.|++.+.+.|.+. |+.++...|..-|.+|+.||++.|
T Consensus 63 ~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~--G~~rv~w~vldwN~rAi~lY~k~g 140 (163)
T KOG3216|consen 63 GEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKL--GTPRVEWVVLDWNHRAILLYEKVG 140 (163)
T ss_pred CCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHc--CCCcEEEEEeccchhHHHHHHHhC
Confidence 8899999998865432 11233666 7999999999999999999999999776 999999999999999999999999
Q ss_pred cEEEEEEE
Q 043366 114 FKREGVLR 121 (145)
Q Consensus 114 f~~~~~~~ 121 (145)
++..+..+
T Consensus 141 aq~l~~W~ 148 (163)
T KOG3216|consen 141 AQDLKEWR 148 (163)
T ss_pred ccccceeE
Confidence 99887644
No 38
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.53 E-value=2e-13 Score=89.76 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=66.2
Q ss_pred ceEEEE-eCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 29 WFKAIC-LGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 29 ~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
.++++. .++++||++++...... .+++ .++|+|++||+|+|++|+..+++++++. ++.++.+.+. +.
T Consensus 46 ~~~va~~~~~~iiG~~~~~~~~~~----~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~--g~~~l~~~~~-----~~ 114 (169)
T PRK07922 46 EFWVAEHLDGEVVGCGALHVMWED----LAEIRTVAVDPAARGRGVGHAIVERLLDVAREL--GLSRVFVLTF-----EV 114 (169)
T ss_pred cEEEEEecCCcEEEEEEEeecCCC----ceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHc--CCCEEEEEec-----cH
Confidence 455666 79999999988765432 2778 5889999999999999999999999876 9999987764 36
Q ss_pred HHHHHcCcEEEEE
Q 043366 107 KVLQKAGFKREGV 119 (145)
Q Consensus 107 ~~~~k~Gf~~~~~ 119 (145)
+||+|+||+..+.
T Consensus 115 ~fY~k~GF~~~~~ 127 (169)
T PRK07922 115 EFFARHGFVEIDG 127 (169)
T ss_pred HHHHHCCCEECcc
Confidence 8999999998764
No 39
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.47 E-value=1.6e-12 Score=92.22 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=68.2
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
...+++..++++||++.+....... ..+ .++|+|++||+|+|++|+..+++.+. ..+.+.+...|.+++
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~----~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~------~~~~~~~~~~n~~a~ 115 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTD----PAMAELVVHPAHRRRGIGRALIRALLAKGG------GRLRVWAHGDLPAAR 115 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCc----ceEEEEEECHhhcCCCHHHHHHHHHHHhcc------CceEEEEcCCCHHHH
Confidence 3456667799999999988764332 344 68999999999999999999998752 347777888999999
Q ss_pred HHHHHcCcEEEEEEEe
Q 043366 107 KVLQKAGFKREGVLRK 122 (145)
Q Consensus 107 ~~~~k~Gf~~~~~~~~ 122 (145)
+||+++||+.......
T Consensus 116 ~fy~~~Gf~~~~~~~~ 131 (292)
T TIGR03448 116 ALASRLGLVPTRELLQ 131 (292)
T ss_pred HHHHHCCCEEccEEEE
Confidence 9999999998876443
No 40
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.47 E-value=9.8e-13 Score=94.66 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=65.2
Q ss_pred CCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEec--CCCHHHHHHHHHc
Q 043366 36 GNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVD--VDNLASQKVLQKA 112 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~--~~N~~a~~~~~k~ 112 (145)
++.+||++.+...... ++| .++|+|++||+|+|+.|+..+++++++. |++.+.+.+. ..|.+|++||+++
T Consensus 242 d~givG~~~~~~~~~~-----~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~--G~~~i~l~v~~~~~N~~A~~fY~~~ 314 (320)
T TIGR01686 242 DSGIIGIFVFEKKEGN-----LFIDDLCMSCRALGRGVETRMLRWLFEQALDL--GNHNARLYYRRTERNMPFLSFYEQI 314 (320)
T ss_pred CCceEEEEEEEecCCc-----EEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHc--CCCeEEEEEeeCCCchHHHHHHHHc
Confidence 6789999988754332 667 7999999999999999999999999887 9999999875 4899999999999
Q ss_pred CcEEE
Q 043366 113 GFKRE 117 (145)
Q Consensus 113 Gf~~~ 117 (145)
||+.+
T Consensus 315 GF~~~ 319 (320)
T TIGR01686 315 GFEDE 319 (320)
T ss_pred CCccC
Confidence 99854
No 41
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.44 E-value=4.1e-12 Score=86.93 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=70.4
Q ss_pred EEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHH
Q 043366 32 AICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQ 110 (145)
Q Consensus 32 ~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~ 110 (145)
-+..+|++|..+......... +.| |.+++|+|||+|+|+.++..+..-.... |.. -.+.+..+|..|.++|+
T Consensus 181 f~~~d~~iVa~A~t~a~~~~~----~~I~gV~T~peyR~kGyAt~lva~L~~~lL~e--Gk~-~~L~~~~~N~~A~~iY~ 253 (268)
T COG3393 181 FLEGDGKIVAKAETAAENPAY----AQINGVYTHPEYRGKGYATALVATLAAKLLAE--GKI-PCLFVNSDNPVARRIYQ 253 (268)
T ss_pred EEccCCcEEEeeeccccCCcc----eEEEEEEcCHHHccccHHHHHHHHHHHHHHhC--CCe-eEEEEecCCHHHHHHHH
Confidence 344466999999988777654 888 8999999999999999999999998887 433 34446689999999999
Q ss_pred HcCcEEEEEEEee
Q 043366 111 KAGFKREGVLRKY 123 (145)
Q Consensus 111 k~Gf~~~~~~~~~ 123 (145)
|+||+..|+...+
T Consensus 254 riGF~~~g~~~~~ 266 (268)
T COG3393 254 RIGFREIGEFREY 266 (268)
T ss_pred HhCCeecceEEEE
Confidence 9999999976644
No 42
>PLN02825 amino-acid N-acetyltransferase
Probab=99.43 E-value=2.3e-12 Score=97.15 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=70.0
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQK 107 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 107 (145)
.+++++.||++||++.+.+.... ..+++ .++|+|+|||+|+|++|+..++++|++. |++++.+.+ +.+.+
T Consensus 408 ~f~V~e~Dg~IVG~aal~~~~~~---~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~--G~~~L~Llt----t~a~~ 478 (515)
T PLN02825 408 SFVVVEREGSIIACAALFPFFEE---KCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASL--GLEKLFLLT----TRTAD 478 (515)
T ss_pred cEEEEEECCEEEEEEEEEeecCC---CcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEe----CcHHH
Confidence 46777889999999998866543 23788 5899999999999999999999999877 999999876 24789
Q ss_pred HHHHcCcEEEEE
Q 043366 108 VLQKAGFKREGV 119 (145)
Q Consensus 108 ~~~k~Gf~~~~~ 119 (145)
||+++||+..+.
T Consensus 479 fY~k~GF~~~~~ 490 (515)
T PLN02825 479 WFVRRGFSECSI 490 (515)
T ss_pred HHHHCCCEEeCh
Confidence 999999998775
No 43
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.41 E-value=3.5e-12 Score=80.93 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=70.2
Q ss_pred eEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHH
Q 043366 30 FKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKV 108 (145)
Q Consensus 30 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 108 (145)
+++++.+|.+||++.+.+.... ..+++ ++.|+|++|++|+|.+|+..++..|++. |++++.+-+. .+..|
T Consensus 42 F~i~E~~g~viGC~aL~~~~~~---~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~--gi~~lf~LTt----~~~~~ 112 (153)
T COG1246 42 FTIIERDGKVIGCAALHPVLEE---DLGELRSLAVHPDYRGSGRGERLLERLLADAREL--GIKELFVLTT----RSPEF 112 (153)
T ss_pred heeeeeCCcEEEEEeecccCcc---CeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHc--CCceeeeeec----ccHHH
Confidence 6678889999999999974443 23899 7999999999999999999999999877 9999998774 57789
Q ss_pred HHHcCcEEEEE
Q 043366 109 LQKAGFKREGV 119 (145)
Q Consensus 109 ~~k~Gf~~~~~ 119 (145)
|+++||+.+..
T Consensus 113 F~~~GF~~vd~ 123 (153)
T COG1246 113 FAERGFTRVDK 123 (153)
T ss_pred HHHcCCeECcc
Confidence 99999998865
No 44
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.41 E-value=6.8e-12 Score=90.26 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=78.2
Q ss_pred hhHHHHHHhhh-cC--CCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCC
Q 043366 13 EDGINFFKNKV-IN--NHPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWP 89 (145)
Q Consensus 13 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~ 89 (145)
++..+|+.+.. .. +...++++..+|++||++++.. + ..-.++|+|++||+|+|++|+..+++++++.
T Consensus 13 ~~v~~fL~~~~l~~d~~~d~~vv~~~~~~lVg~g~l~g----~----~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~-- 82 (332)
T TIGR00124 13 CGIKNFLHQNELSLDAPLEIFIAVYEDEEIIGCGGIAG----N----VIKCVAIDESLRGEGLALQLMTELENLAYEL-- 82 (332)
T ss_pred HHHHHHHHhcCCcccCCCCEEEEEEECCEEEEEEEEec----C----EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHc--
Confidence 56778887652 21 2356677778999999999842 1 2227899999999999999999999999887
Q ss_pred CcceEEEEecCCCHHHHHHHHHcCcEEEEEEEe
Q 043366 90 HLQRLEATVDVDNLASQKVLQKAGFKREGVLRK 122 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~ 122 (145)
|+.++.+.+.+.| .+||+++||...+...+
T Consensus 83 G~~~l~l~Tk~~~---~~fy~klGF~~i~~~~~ 112 (332)
T TIGR00124 83 GRFHLFIFTKPEY---AALFEYCGFKTLAEAKD 112 (332)
T ss_pred CCCEEEEEECchH---HHHHHHcCCEEeeeecc
Confidence 9999999997665 46999999999988764
No 45
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.41 E-value=2.7e-12 Score=99.39 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=68.1
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
..++++..+|++||++.+...... ..++ .++|+|+|||+|+|+.|+..+++++++. |+..+.+.+ .+.
T Consensus 503 ~~~~Va~~~g~IVG~~~l~~~~~~----~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~--g~~~i~l~~-----~a~ 571 (614)
T PRK12308 503 GSFAVAEHHGEVTGCASLYIYDSG----LAEIRSLGVEAGWQVQGQGSALVQYLVEKARQM--AIKKVFVLT-----RVP 571 (614)
T ss_pred CcEEEEEECCEEEEEEEEEEcCCC----eEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEee-----CcH
Confidence 345677789999999998765432 2677 7999999999999999999999999877 899988754 246
Q ss_pred HHHHHcCcEEEEEE
Q 043366 107 KVLQKAGFKREGVL 120 (145)
Q Consensus 107 ~~~~k~Gf~~~~~~ 120 (145)
+||+|+||+.++..
T Consensus 572 ~FYek~GF~~~~~~ 585 (614)
T PRK12308 572 EFFMKQGFSPTSKS 585 (614)
T ss_pred HHHHHCCCEECCcc
Confidence 89999999988754
No 46
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.41 E-value=3.7e-12 Score=90.36 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=63.5
Q ss_pred eEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHH
Q 043366 30 FKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKV 108 (145)
Q Consensus 30 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 108 (145)
+++..+++++||++++.. ..+ .++|+|+|||+|+|++|+..+++++++. |+.++.+.+...| ..|
T Consensus 8 ~~v~~~~~~iVG~~~l~~---------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~--g~~~i~L~t~~~~---~~f 73 (297)
T cd02169 8 VGIFDDAGELIATGSIAG---------NVLKCVAVCPKYQGEGLALKIVSELINKAYEE--GIFHLFLFTKPKN---AKF 73 (297)
T ss_pred EEEEEECCEEEEEEEecc---------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEEcccH---HHH
Confidence 444556799999998852 234 7899999999999999999999999887 9999999886554 589
Q ss_pred HHHcCcEEEE
Q 043366 109 LQKAGFKREG 118 (145)
Q Consensus 109 ~~k~Gf~~~~ 118 (145)
|+|+||+..+
T Consensus 74 Yek~GF~~~~ 83 (297)
T cd02169 74 FRGLGFKELA 83 (297)
T ss_pred HHHCCCEEec
Confidence 9999999988
No 47
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.41 E-value=4e-12 Score=95.11 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=68.3
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQK 107 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 107 (145)
.++++..++++||++.+...... ..+++ .++|+|+|||+|+|++|+..+++++++. ++..+.+.+ ..+++
T Consensus 335 ~~~va~~dg~iVG~~~~~~~~~~---~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~--g~~~l~l~~----~~a~~ 405 (441)
T PRK05279 335 KFTVIERDGLIIGCAALYPFPEE---KMGEMACLAVHPDYRGSGRGERLLKRIEQRARQL--GLKRLFVLT----TRTAH 405 (441)
T ss_pred cEEEEEECCEEEEEEEEEEcCCC---CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEec----chHHH
Confidence 35677789999999988876542 23677 6899999999999999999999999877 888887543 46899
Q ss_pred HHHHcCcEEEEE
Q 043366 108 VLQKAGFKREGV 119 (145)
Q Consensus 108 ~~~k~Gf~~~~~ 119 (145)
||+|+||+.++.
T Consensus 406 fY~k~GF~~~g~ 417 (441)
T PRK05279 406 WFLERGFVPVDV 417 (441)
T ss_pred HHHHCcCEECCh
Confidence 999999999886
No 48
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.39 E-value=5.8e-12 Score=77.77 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=79.7
Q ss_pred hhHHHHHHhhhcCCCCce-EEEEe--CCEEEEEEEEeeCCCCC--CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhh
Q 043366 13 EDGINFFKNKVINNHPWF-KAICL--GNKPIGAILVTPNSGDC--NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFD 86 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~vG~~~~~~~~~~~--~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~ 86 (145)
++....++.+....+.++ .++++ .+++||.+++...-..- ....+.+ .++|++++||+++|+.++..+...++.
T Consensus 37 e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~ 116 (150)
T KOG3396|consen 37 EQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKS 116 (150)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHh
Confidence 666777776666644333 34444 79999999988543321 2334777 799999999999999999999999977
Q ss_pred cCCCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 87 EWPHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 87 ~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
. |+-++.+.|.+.|. .||+|+||...+.
T Consensus 117 l--gcYKi~LdC~~~nv---~FYeKcG~s~~~~ 144 (150)
T KOG3396|consen 117 L--GCYKIILDCDPKNV---KFYEKCGYSNAGN 144 (150)
T ss_pred c--CcEEEEEecchhhh---hHHHHcCccccch
Confidence 6 99999999999986 5999999988763
No 49
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.39 E-value=1.5e-11 Score=76.95 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=66.7
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCC---CceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCc
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCN---KCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHL 91 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~---~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~ 91 (145)
..+....... ..++++.++|++||.+.+.+..-... ...+.+ +++|+|++||+|+|++|+..+++.++++ ++
T Consensus 31 ~~~~~~~~~~--~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~--g~ 106 (127)
T PF13527_consen 31 WEYFRNLYGP--GRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARER--GV 106 (127)
T ss_dssp HHHHHHHHHT--TEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT--T-
T ss_pred hhhhhcccCc--CcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CC
Confidence 3444555543 46778888999999999986522110 122444 5789999999999999999999999887 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCcEEE
Q 043366 92 QRLEATVDVDNLASQKVLQKAGFKRE 117 (145)
Q Consensus 92 ~~i~~~~~~~N~~a~~~~~k~Gf~~~ 117 (145)
..+.+.. .+..+|+|+||+.+
T Consensus 107 ~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 107 PFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp SEEEEE------SSHHHHHHTTEEEE
T ss_pred CEEEEec-----CChhhhhcCCCEEC
Confidence 8777655 23689999999863
No 50
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.39 E-value=5.6e-12 Score=94.04 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=67.3
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQK 107 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 107 (145)
.++++..++++||++.+.+.... ..+++ .++|+|+|||+|+|++|+..++++|+++ ++..+.+. ..| +.+
T Consensus 323 ~~~V~~~dg~iVG~~~~~~~~~~---~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~--G~~~l~v~--~~~--a~~ 393 (429)
T TIGR01890 323 EFSIIEHDGNIIGCAALYPYAEE---DCGEMACLAVSPEYQDGGRGERLLAHIEDRARQM--GISRLFVL--TTR--TGH 393 (429)
T ss_pred cEEEEEECCEEEEEEEEEecCCC---CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEe--ecc--hHH
Confidence 35666779999999999876432 23778 5899999999999999999999999887 88887643 334 579
Q ss_pred HHHHcCcEEEEE
Q 043366 108 VLQKAGFKREGV 119 (145)
Q Consensus 108 ~~~k~Gf~~~~~ 119 (145)
||+|+||+.++.
T Consensus 394 fY~k~GF~~~g~ 405 (429)
T TIGR01890 394 WFRERGFQTASV 405 (429)
T ss_pred HHHHCCCEECCh
Confidence 999999999986
No 51
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.37 E-value=2.8e-12 Score=83.52 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=72.1
Q ss_pred ceEEEEeC-CEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 29 WFKAICLG-NKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 29 ~~~~~~~~-~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
.++++..+ +.+|||+++....+.. .....+ .+-|.++|||+|||+.|+..+...+... ..+++.++|...|.+|+
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g-~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~--~~~kVmLTVf~~N~~al 169 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTG-DPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSR--HMRKVMLTVFSENIRAL 169 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccC-CeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHH--HhhhheeeeecccchhH
Confidence 34444444 4899999998776553 222222 5668899999999999999999999777 89999999999999999
Q ss_pred HHHHHcCcEEEEEEE
Q 043366 107 KVLQKAGFKREGVLR 121 (145)
Q Consensus 107 ~~~~k~Gf~~~~~~~ 121 (145)
+||+++||......+
T Consensus 170 ~Fy~~~gf~~~~~sp 184 (202)
T KOG2488|consen 170 GFYHRLGFVVDEESP 184 (202)
T ss_pred HHHHHcCcccCCCCC
Confidence 999999998876544
No 52
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.7e-11 Score=76.90 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=81.3
Q ss_pred hhHHHHHHhhhcCCCCceEEEEe-----C-----CEEEEEEEEeeCCCCC------CCceeEEEEEE-CcCccCCCHHHH
Q 043366 13 EDGINFFKNKVINNHPWFKAICL-----G-----NKPIGAILVTPNSGDC------NKCRAILGYVV-ASKYWGKGIATR 75 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~vG~~~~~~~~~~~------~~~~~~i~~~v-~~~~rg~G~g~~ 75 (145)
++-.+....+..+.+...|++.+ . ...||-+.+......+ ..-++++.++| -|..||+|+|++
T Consensus 48 deEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~e 127 (185)
T KOG4135|consen 48 DEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTE 127 (185)
T ss_pred hHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHH
Confidence 44444444444444556676663 1 2378888887654433 12347787887 599999999999
Q ss_pred HHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 76 AVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 76 l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
++.+++.|+...+ ++.+..+.+..+|.+|+++|+|++|..+..
T Consensus 128 av~~ml~y~~s~l-~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~ 170 (185)
T KOG4135|consen 128 AVRAMLAYAYSVL-KLDKYEVKIGMDNKPSLRLFKKFLFTQVFY 170 (185)
T ss_pred HHHHHHHHHHHHh-hhheEEEEecCCCchHHHHHHHhhheeeee
Confidence 9999999999988 999999999999999999999999998865
No 53
>PRK13688 hypothetical protein; Provisional
Probab=99.32 E-value=3.8e-11 Score=77.87 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=59.7
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCC------CCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEec
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGD------CNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVD 99 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~------~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~ 99 (145)
...++++..++++||++.+...... .....+++ .++|+|+|||+|+|++|+..+. +. ++. + .+.
T Consensus 44 ~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~--~~~-~--~~~ 114 (156)
T PRK13688 44 ESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SF--QLP-I--KTI 114 (156)
T ss_pred CCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----Hh--CCe-E--EEE
Confidence 3556777789999999887543211 01233677 6899999999999999987544 33 433 2 344
Q ss_pred CCCHHHHHHHHHcCcEEEEEE
Q 043366 100 VDNLASQKVLQKAGFKREGVL 120 (145)
Q Consensus 100 ~~N~~a~~~~~k~Gf~~~~~~ 120 (145)
..| .+.+||+|+||+.++..
T Consensus 115 ~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 115 ARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred ecc-chHHHHHhCCCEEeEEe
Confidence 556 47899999999999876
No 54
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.31 E-value=4e-11 Score=76.03 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=85.7
Q ss_pred HHHHHhhhcCCCCceEEEE-eCCEEEEEEEEeeCCCCC-CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcc
Q 043366 16 INFFKNKVINNHPWFKAIC-LGNKPIGAILVTPNSGDC-NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQ 92 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~-~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~ 92 (145)
.-|+-..+.- ....|+.. .+|.+||++-....++.. ....+.| ++.|..+||+.|+|++||.+......+.. +..
T Consensus 30 kyylyh~lsw-p~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~-~A~ 107 (193)
T KOG3235|consen 30 KYYLYHGLSW-PQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVY-EAK 107 (193)
T ss_pred HHHHHhhccc-ccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhh-cce
Confidence 3444444443 34456565 599999999877665322 1223667 89999999999999999999988887777 899
Q ss_pred eEEEEecCCCHHHHHHHH-HcCcEEEEEEEeeEEe
Q 043366 93 RLEATVDVDNLASQKVLQ-KAGFKREGVLRKYITL 126 (145)
Q Consensus 93 ~i~~~~~~~N~~a~~~~~-k~Gf~~~~~~~~~~~~ 126 (145)
.+.+.|...|.+|+.+|. .+||++.+..+.|+..
T Consensus 108 yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYad 142 (193)
T KOG3235|consen 108 YVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYAD 142 (193)
T ss_pred EEEEeeecccHHHHHhhhhccceEEeecccccccc
Confidence 999999999999999999 8999999988877643
No 55
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=76.78 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=80.2
Q ss_pred eCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcC
Q 043366 35 LGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAG 113 (145)
Q Consensus 35 ~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~G 113 (145)
.+|++.|++.....+....++ +.+ ++.|.|+||+.|+|+.+|..+++-..+. +.-.+.+-|...|+.|+.+|+++|
T Consensus 49 p~~~imgyimgk~Eg~~~~wh-~HvTAltVap~~Rrl~la~~lm~~led~~d~~--~a~fvDLfVr~sN~iAI~mYkkLG 125 (173)
T KOG3234|consen 49 PTGEIMGYIMGKVEGKDTEWH-GHVTALTVAPDYRRLGLAAKLMDTLEDVSDVD--NAYFVDLFVRVSNQIAIDMYKKLG 125 (173)
T ss_pred CCCceEEEEeeeccccCccee-eEEEEEEechhHHHHHHHHHHHHHHHHHHHhh--hhheeeeeeeccchhHHHHHHhcC
Confidence 389999999885555443344 444 7889999999999999999999998665 778899999999999999999999
Q ss_pred cEEEEEEEeeEEeCCeEeEEEEEEe
Q 043366 114 FKREGVLRKYITLKGKATDVVMFSL 138 (145)
Q Consensus 114 f~~~~~~~~~~~~~g~~~~~~~~~l 138 (145)
|..-.+..+++.. |...|..-|++
T Consensus 126 Y~~YR~Vi~YY~~-g~deda~dMRK 149 (173)
T KOG3234|consen 126 YSVYRTVIEYYSV-GPDEDAYDMRK 149 (173)
T ss_pred ceEEEeeeeeecc-CCCcchHhhhh
Confidence 9999988888753 54445555543
No 56
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.27 E-value=2e-10 Score=80.07 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=66.0
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHH
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQK 107 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 107 (145)
..-+++..+|++|+.+.-....... .+|++..+|+|||+|+|+.+...++..++++ ++.-.+- + .|.+|++
T Consensus 165 G~Gf~i~~~~~iVs~~~s~~~~~~~----~EI~I~T~~~yR~kGLA~~~aa~~I~~Cl~~--~l~P~WD-c--~N~~S~~ 235 (265)
T PF12746_consen 165 GFGFCILHDGEIVSGCSSYFVYENG----IEIDIETHPEYRGKGLATAVAAAFILECLEN--GLYPSWD-C--HNLASIA 235 (265)
T ss_dssp --EEEEEETTEEEEEEEEEEEETTE----EEEEEEE-CCCTTSSHHHHHHHHHHHHHHHT--T-EEE-E-E--SSHHHHH
T ss_pred CcEEEEEECCEEEEEEEEEEEECCE----EEEEEEECHHhhcCCHHHHHHHHHHHHHHHC--CCCcCee-C--CCHHHHH
Confidence 3567788899998655444333332 9999999999999999999999999999998 7665443 4 5999999
Q ss_pred HHHHcCcEEEEEEEeeEEe
Q 043366 108 VLQKAGFKREGVLRKYITL 126 (145)
Q Consensus 108 ~~~k~Gf~~~~~~~~~~~~ 126 (145)
+.+|+||+......-+...
T Consensus 236 lA~kLGf~~~~~Y~~Y~v~ 254 (265)
T PF12746_consen 236 LAEKLGFHFDFEYTAYEVN 254 (265)
T ss_dssp HHHHCT--EEEEEEEE---
T ss_pred HHHHcCCcccceeeeeeec
Confidence 9999999999887766533
No 57
>PRK01346 hypothetical protein; Provisional
Probab=99.20 E-value=6.2e-10 Score=82.70 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=67.0
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCC----CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDC----NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNL 103 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~----~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~ 103 (145)
..+++..+|++||++.+.+..... ......+ +++|+|+|||+|+|++||..+++.+++. |...+.+.+..
T Consensus 48 ~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~--g~~~~~L~~~~--- 122 (411)
T PRK01346 48 RTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRER--GEPVAALTASE--- 122 (411)
T ss_pred CeEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHC--CCcEEEEECCc---
Confidence 456777899999999987543111 0122455 7899999999999999999999999877 88777776532
Q ss_pred HHHHHHHHcCcEEEEEEEee
Q 043366 104 ASQKVLQKAGFKREGVLRKY 123 (145)
Q Consensus 104 ~a~~~~~k~Gf~~~~~~~~~ 123 (145)
.+||+|+||........+
T Consensus 123 --~~~Y~r~Gf~~~~~~~~~ 140 (411)
T PRK01346 123 --GGIYGRFGYGPATYSQSL 140 (411)
T ss_pred --hhhHhhCCCeeccceEEE
Confidence 369999999988765544
No 58
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.09 E-value=1.2e-09 Score=82.82 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCEEEEEEEEeeCCCCC-------CCceeEEEEE---------ECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEec
Q 043366 36 GNKPIGAILVTPNSGDC-------NKCRAILGYV---------VASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVD 99 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~~-------~~~~~~i~~~---------v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~ 99 (145)
++.+||++.+....... ....-++.++ ..++|||+|+|++|+.+++++|++. |+..+.+..
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~--G~~~i~v~s- 498 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEE--GSEKILVIS- 498 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHC--CCCEEEEee-
Confidence 67899999998765421 0111244433 3589999999999999999999887 999998744
Q ss_pred CCCHHHHHHHHHcCcEEEEE
Q 043366 100 VDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 100 ~~N~~a~~~~~k~Gf~~~~~ 119 (145)
|..+++||+|+||+..+.
T Consensus 499 --~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 499 --GIGVREYYRKLGYELDGP 516 (522)
T ss_pred --CchHHHHHHHCCCEEEcc
Confidence 789999999999998875
No 59
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.09 E-value=3.8e-09 Score=69.00 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=67.9
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCCC-CCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHH
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGDC-NKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLA 104 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~~-~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~ 104 (145)
....++..++|++||.+.+.+..-.. ......++ +.|+|++||||||.+|++..++.++.. |...+.+-=++
T Consensus 45 ~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~--G~~~v~vlGdp---- 118 (171)
T COG3153 45 LTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLA--GASAVVVLGDP---- 118 (171)
T ss_pred cceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHC--CCCEEEEecCc----
Confidence 45677888899999999999876552 12223344 779999999999999999999999776 88877764433
Q ss_pred HHHHHHHcCcEEEEEEE
Q 043366 105 SQKVLQKAGFKREGVLR 121 (145)
Q Consensus 105 a~~~~~k~Gf~~~~~~~ 121 (145)
.+|.++||+......
T Consensus 119 --~YY~rfGF~~~~~~~ 133 (171)
T COG3153 119 --TYYSRFGFEPAAGAK 133 (171)
T ss_pred --ccccccCcEEccccc
Confidence 389999999987644
No 60
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.09 E-value=1.4e-09 Score=70.11 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCc
Q 043366 36 GNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGF 114 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf 114 (145)
..++||...+.+..... +...+ .++|+.++||+|+|+.+|+.++.|++.. +++++++++.. -.+||+++||
T Consensus 65 ~~~VigH~rLS~i~n~~--~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~--gf~~~yLsT~D----Q~~FYe~lGY 136 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRD--HALWVESVVVKKDQRGLGFGKFLMKSTEKWMREK--GFNEAYLSTDD----QCRFYESLGY 136 (225)
T ss_pred ccceeeeeccccCCCCC--ceeEEEEEEEehhhccccHHHHHHHHHHHHHHHh--hhhheeeeccc----chhhhhhhcc
Confidence 67899999999888764 54666 6889999999999999999999999888 89999998865 4579999999
Q ss_pred EEEEEEEe
Q 043366 115 KREGVLRK 122 (145)
Q Consensus 115 ~~~~~~~~ 122 (145)
+...-...
T Consensus 137 e~c~Pi~~ 144 (225)
T KOG3397|consen 137 EKCDPIVH 144 (225)
T ss_pred cccCceec
Confidence 97665443
No 61
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.06 E-value=2.8e-09 Score=57.73 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=51.7
Q ss_pred EEEEeCCEEEEEEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEE
Q 043366 31 KAICLGNKPIGAILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEA 96 (145)
Q Consensus 31 ~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~ 96 (145)
+++..+++++|++.+...... ...++++ ++++|++||+|+|++++..+++++++. +.+++.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~--~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~--~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSG--GDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARER--GAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCC--CccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHc--CCcEEEe
Confidence 455668999999999988743 2337885 889999999999999999999999875 8888765
No 62
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.04 E-value=1e-09 Score=63.72 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=62.8
Q ss_pred eCCEEEEEEEEeeCCCCCCCceeEEEEE-ECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcC
Q 043366 35 LGNKPIGAILVTPNSGDCNKCRAILGYV-VASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAG 113 (145)
Q Consensus 35 ~~~~~vG~~~~~~~~~~~~~~~~~i~~~-v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~G 113 (145)
.+|++|.++..... +++++. ..|+|||||+.+.++...++++.+. |+. ++..|+.+|+.++++.+++|
T Consensus 6 peG~PVSW~lmdqt--------ge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~--g~P-~Y~hv~~~N~~~~r~~~~lg 74 (89)
T PF08444_consen 6 PEGNPVSWSLMDQT--------GEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKL--GFP-FYGHVDEDNEASQRLSKSLG 74 (89)
T ss_pred CCCCEeEEEEeccc--------ccccccccCHhHhcCCHHHHHHHHHHHHHHHC--CCC-eEeehHhccHHHHHHHHHCC
Confidence 48889988877543 777654 6899999999999999999999776 766 88999999999999999999
Q ss_pred cEEEE
Q 043366 114 FKREG 118 (145)
Q Consensus 114 f~~~~ 118 (145)
|....
T Consensus 75 ~~~~p 79 (89)
T PF08444_consen 75 FIFMP 79 (89)
T ss_pred CeecC
Confidence 98754
No 63
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.02 E-value=5.8e-10 Score=73.60 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=84.6
Q ss_pred HHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCC-----c-eeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCC
Q 043366 17 NFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNK-----C-RAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWP 89 (145)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~-----~-~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~ 89 (145)
.|++......+...+++. ++..+|..+.......... . ...+ .+.|.+.||.+|+|+.++..+.+++....
T Consensus 45 kfy~~~~~~~~~~~~A~~-~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~- 122 (187)
T KOG3138|consen 45 KFYPDVLSNGDLTQLAYY-NEIAVGAVACKLIKFVQNAKRLFGNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAH- 122 (187)
T ss_pred HHHHHHHhcCCHHHhhhh-ccccccceeeeehhhhhhhhhhhccceeEEEeecccHHHHhcchHHHHHHHHHHHHhccc-
Confidence 366666665344444444 4555555555544332200 0 1334 67899999999999999999999996652
Q ss_pred CcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFS 137 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~ 137 (145)
.+..+.+.+...|..++.||++.||+.+...++++...+...+..++.
T Consensus 123 ~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~~~~l~~ 170 (187)
T KOG3138|consen 123 QCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPDDSFLRK 170 (187)
T ss_pred ccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcchhhhhh
Confidence 388899999999999999999999999999888776655544444444
No 64
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.01 E-value=6.2e-09 Score=65.30 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=69.0
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
.+.++...+|++++++.+.+..... ....|| +.|.|+.||+|+|.+||..+++.+.+..| -+.+.+.. -.-.+
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~--~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p-~~~v~l~A---QahLq 123 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEY--EEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWP-DKPVYLGA---QAHLQ 123 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCc--CceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCC-CCCeEEeh---HHHHH
Confidence 3455555599999999999887764 226686 77899999999999999999999988864 45566655 33578
Q ss_pred HHHHHcCcEEEEE
Q 043366 107 KVLQKAGFKREGV 119 (145)
Q Consensus 107 ~~~~k~Gf~~~~~ 119 (145)
.||.+.||+.+++
T Consensus 124 ~fYa~~GFv~~~e 136 (155)
T COG2153 124 DFYASFGFVRVGE 136 (155)
T ss_pred HHHHHhCcEEcCc
Confidence 8999999999885
No 65
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.81 E-value=1.2e-07 Score=54.44 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=50.7
Q ss_pred EEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHH
Q 043366 31 KAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVL 109 (145)
Q Consensus 31 ~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~ 109 (145)
|.+..+|+.+|.+.+...+ ....+ ...|.|++||||+|+.|+.+++++|+++ +.+ + .+...-+.+++
T Consensus 2 F~~~~~g~~~a~l~Y~~~~-----~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~--~~k-v----~p~C~y~~~~~ 69 (78)
T PF14542_consen 2 FELKDDGEEIAELTYREDG-----GVIVITHTEVPPELRGQGIAKKLVEAALDYAREN--GLK-V----VPTCSYVAKYF 69 (78)
T ss_dssp EEEESSTTEEEEEEEEESS-----SEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHT--T-E-E----EETSHHHHHHH
T ss_pred EEEEECCEEEEEEEEEeCC-----CEEEEEEEEECccccCCcHHHHHHHHHHHHHHHC--CCE-E----EEECHHHHHHH
Confidence 3455678899999997622 23666 7889999999999999999999999887 543 3 34455566666
Q ss_pred HHc
Q 043366 110 QKA 112 (145)
Q Consensus 110 ~k~ 112 (145)
+|.
T Consensus 70 ~~h 72 (78)
T PF14542_consen 70 RRH 72 (78)
T ss_dssp HH-
T ss_pred HhC
Confidence 653
No 66
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.66 E-value=6.8e-07 Score=55.29 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=59.6
Q ss_pred HHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEE
Q 043366 17 NFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLE 95 (145)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~ 95 (145)
+.+++.+.. ....|+...|+.++|.+-+...... +.+ .++|++--|++|+|+.|+.++.+.+ |.++...
T Consensus 28 ~~l~~~l~~-~~~l~aArFNdRlLgAv~v~~~~~~-----~~L~~l~VRevTRrRGVG~yLlee~~rq~----p~i~~w~ 97 (128)
T PF12568_consen 28 EQLEQWLDE-GHRLFAARFNDRLLGAVKVTISGQQ-----AELSDLCVREVTRRRGVGLYLLEEVLRQL----PDIKHWW 97 (128)
T ss_dssp --------S-SEEEEEEEETTEEEEEEEEEEETTE-----EEEEEEEE-TT-SSSSHHHHHHHHHHHHS-----S--EEE
T ss_pred HHHHHHhcc-CCeEEEEEechheeeeEEEEEcCcc-----eEEeeEEEeeccccccHHHHHHHHHHHHC----CCCcEEE
Confidence 344444444 5667788889999999999987654 788 6899999999999999999999765 5788887
Q ss_pred EEecC---CC-HHHHHHHHHcCcEEE
Q 043366 96 ATVDV---DN-LASQKVLQKAGFKRE 117 (145)
Q Consensus 96 ~~~~~---~N-~~a~~~~~k~Gf~~~ 117 (145)
+.... .+ .....|.+.+||...
T Consensus 98 l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 98 LADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp E--TT-S--THHHHHHHHHHHT-EE-
T ss_pred EecCCCcccchHHHHHHHHHcCcccc
Confidence 76553 23 456689999999654
No 67
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.56 E-value=3.9e-06 Score=56.15 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHhhhcCCCCceEEEEeCC--EEEEEEEEeeCCCCC---------------------------------CCceeEE-EEE
Q 043366 19 FKNKVINNHPWFKAICLGN--KPIGAILVTPNSGDC---------------------------------NKCRAIL-GYV 62 (145)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~--~~vG~~~~~~~~~~~---------------------------------~~~~~~i-~~~ 62 (145)
++...+.++...|++..++ +++|.+-+.....-+ ....+-| .+.
T Consensus 18 L~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIA 97 (196)
T PF13718_consen 18 LQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIA 97 (196)
T ss_dssp HHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEE
T ss_pred HHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEE
Confidence 3444555566778888888 999999877533210 0122444 688
Q ss_pred ECcCccCCCHHHHHHHHHHHHHh-------------------------hcCCCcceEEEEecCCCHHHHHHHHHcCcEEE
Q 043366 63 VASKYWGKGIATRAVKMVTGIIF-------------------------DEWPHLQRLEATVDVDNLASQKVLQKAGFKRE 117 (145)
Q Consensus 63 v~~~~rg~G~g~~l~~~~~~~~~-------------------------~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~ 117 (145)
|+|++|++|+|+++++.+++++. .. ++..+.+.-.. +..-.+|+.|+||..+
T Consensus 98 vhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~vDylGtSFG~-t~~Ll~FW~k~gf~pv 174 (196)
T PF13718_consen 98 VHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPP--GVDYLGTSFGA-TPELLKFWQKNGFVPV 174 (196)
T ss_dssp E-CCC-SSSHHHHHHHHHHHT-------------------------------S-SEEEEEEE---HHHHHHHHCTT-EEE
T ss_pred EChhhhcCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc--CCCEEEeccCC-CHHHHHHHHHCCcEEE
Confidence 99999999999999999999993 33 67777766554 5678899999999998
Q ss_pred EEEEeeEEeCCeEeEEE
Q 043366 118 GVLRKYITLKGKATDVV 134 (145)
Q Consensus 118 ~~~~~~~~~~g~~~~~~ 134 (145)
......-..-|.+.-+.
T Consensus 175 ~l~~~~n~~SGe~S~im 191 (196)
T PF13718_consen 175 YLGQTRNEASGEHSAIM 191 (196)
T ss_dssp EE-SS--TTT---EEEE
T ss_pred EEecCcccccCceeeeE
Confidence 76555443345544333
No 68
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.53 E-value=1.9e-06 Score=52.46 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=59.7
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQK 107 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 107 (145)
-.|.+..+|.+|||+-+-.........-..+ .++|...||++|+|+++++++..-++ ..-.+.+.++|.+|++
T Consensus 38 ~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~------g~w~Va~i~EN~PA~~ 111 (143)
T COG5628 38 EAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW------GVWQVATVRENTPARA 111 (143)
T ss_pred ceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh------ceEEEEEeccCChhHH
Confidence 4556667999999998765544320101333 47899999999999999999876542 2456668889999999
Q ss_pred HHHHcCcE
Q 043366 108 VLQKAGFK 115 (145)
Q Consensus 108 ~~~k~Gf~ 115 (145)
++++.-+.
T Consensus 112 fwK~~~~t 119 (143)
T COG5628 112 FWKRVAET 119 (143)
T ss_pred HHHhhhcc
Confidence 99998765
No 69
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=98.38 E-value=8e-06 Score=50.46 Aligned_cols=106 Identities=12% Similarity=0.174 Sum_probs=85.2
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
+..++.+...++++|+..+....... .+..-+.+|++|| ++.+.-.+.-+|+.+.. ..+.+..-+...-.-.+
T Consensus 37 ~~~Y~gVyeg~~l~Gi~~v~~i~~~~----vecHa~y~P~fRG--~a~~~~~~F~kwlL~Ns-~f~~vit~vp~kt~~Gr 109 (151)
T PF11039_consen 37 DQLYLGVYEGGQLGGIVYVEEIQPSV----VECHAMYDPGFRG--YALEIGRLFCKWLLENS-PFQNVITFVPDKTRYGR 109 (151)
T ss_pred ccEEEEEEeceEEEEEEEEEEEeeee----EEEEeeeccccch--hHHHHHHHHHHHHhcCC-ceeEEEEecccccccch
Confidence 44577888899999999998776543 8888888999997 99999999999999887 66666555655555677
Q ss_pred HHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEeccCc
Q 043366 107 KVLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTD 142 (145)
Q Consensus 107 ~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~~ 142 (145)
-..+-+|.+.+|..++++. +. .++-+|++++++
T Consensus 110 vic~llg~~RVG~id~~~~-g~--~~vTlYq~tRee 142 (151)
T PF11039_consen 110 VICRLLGARRVGHIDDYFK-GV--DGVTLYQLTREE 142 (151)
T ss_pred hHhhhhCCceeeeHHHHhc-CC--CceEEEEccHHH
Confidence 7888899999999999773 32 289999998875
No 70
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.37 E-value=2e-06 Score=51.25 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=51.6
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcc
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQ 92 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~ 92 (145)
....+.+..+|+.+|.+..++..... ..| .-+|.+++||||+|..|+..+++.|++. +.+
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~~~~~~~----i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~--g~k 74 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYYDRGENL----IIIDHTYVPDELRGQGIAQKLVEKALEEAREA--GLK 74 (99)
T ss_pred CceEEEEecCCcEEEEEEEecCCCCE----EEEecCcCCHHHcCCcHHHHHHHHHHHHHHHc--CCe
Confidence 56678888899999999999888653 666 6789999999999999999999999876 654
No 71
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.30 E-value=8.2e-06 Score=57.22 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=74.3
Q ss_pred hhHHHHHHhhhcC---CCCceEEEEe-CCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcC
Q 043366 13 EDGINFFKNKVIN---NHPWFKAICL-GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEW 88 (145)
Q Consensus 13 ~~~~~~~~~~~~~---~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~ 88 (145)
.+...++.+.... .-.++.+++. ++++|++.++....-. .+.|++.+||.|++-+++.++++++.+.
T Consensus 18 ~~i~~fL~~~~l~~d~~ve~~v~~~~~~~~iiacGsiaGnvik--------cvAvs~s~qGeGl~lkl~TeLin~ay~~- 88 (352)
T COG3053 18 AEIAEFLHQNDLRVDTTVEYFVAIYRDNEEIIACGSIAGNVIK--------CVAVSESLQGEGLALKLVTELINLAYER- 88 (352)
T ss_pred HHHHHHHhhcCceecccceEEEEEEcCCCcEEEecccccceeE--------EEEechhcccccHHHHHHHHHHHHHHHc-
Confidence 4445555543322 1234555555 5999999988744322 6789999999999999999999999888
Q ss_pred CCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEee
Q 043366 89 PHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKY 123 (145)
Q Consensus 89 ~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~ 123 (145)
|..++.+.|.+. ...+|+.+||.......+.
T Consensus 89 -g~~hLFiyTKp~---~~~lFk~~GF~~i~~~~~~ 119 (352)
T COG3053 89 -GRTHLFIYTKPE---YAALFKQCGFSEIASAENV 119 (352)
T ss_pred -CCceEEEEechh---HHHHHHhCCceEeeccCce
Confidence 999999999765 4579999999998876665
No 72
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.07 E-value=6e-06 Score=52.61 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=59.8
Q ss_pred CCEEEEEEEEeeCCCCC-----------CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCH
Q 043366 36 GNKPIGAILVTPNSGDC-----------NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNL 103 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~~-----------~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~ 103 (145)
.+.+||++.....+... ..+-+.| .+.|+|+||.||+|+.|+-.-++..-.+- -.+++.+.+ ..
T Consensus 70 ~~tLIghIigs~~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~-i~~r~~Li~---h~ 145 (190)
T KOG4144|consen 70 EGTLIGHIIGSLWDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQP-IVRRAALIC---HD 145 (190)
T ss_pred cccceehhhcccCcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCc-cccceeeee---cC
Confidence 78899999877655442 1122445 57789999999999999999777664543 556676655 44
Q ss_pred HHHHHHHHcCcEEEEEE
Q 043366 104 ASQKVLQKAGFKREGVL 120 (145)
Q Consensus 104 ~a~~~~~k~Gf~~~~~~ 120 (145)
+-.-||+++||+.++..
T Consensus 146 pLvPFYEr~gFk~vgp~ 162 (190)
T KOG4144|consen 146 PLVPFYERFGFKAVGPC 162 (190)
T ss_pred CccchhHhcCceeeccc
Confidence 67889999999999863
No 73
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.05 E-value=9.6e-06 Score=48.47 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=40.3
Q ss_pred EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCc
Q 043366 61 YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGF 114 (145)
Q Consensus 61 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf 114 (145)
++|+|++||+|+|+.|+..+++++... ++. .|..+..++.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~--g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKR--GIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHc--Cce--------ehHHHHHHHHhcCC
Confidence 899999999999999999999999776 555 78899999999998
No 74
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.99 E-value=0.00022 Score=56.45 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=75.0
Q ss_pred hcCCCCceEEEEeCC-EEEEEEEEeeCCCCC--------------------------------CCceeEE-EEEECcCcc
Q 043366 23 VINNHPWFKAICLGN-KPIGAILVTPNSGDC--------------------------------NKCRAIL-GYVVASKYW 68 (145)
Q Consensus 23 ~~~~~~~~~~~~~~~-~~vG~~~~~~~~~~~--------------------------------~~~~~~i-~~~v~~~~r 68 (145)
.+.++...+++..++ .+|+.+.+......+ ....+-| -+.|+|++|
T Consensus 465 ~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q 544 (758)
T COG1444 465 LDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVHPELQ 544 (758)
T ss_pred hcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEEeCHHHH
Confidence 334556677777655 888888777543330 0011344 578999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeE
Q 043366 69 GKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATD 132 (145)
Q Consensus 69 g~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~ 132 (145)
++|||+++++.+.+++. . ++..+.+.-.. ++.-.+|+.|+||..+...++.-...|.+.-
T Consensus 545 ~~GiGsrlL~~l~~~a~-~--~~DwlgvsFG~-t~~L~rFW~rnGF~pVhls~~rn~~SGeys~ 604 (758)
T COG1444 545 RMGIGSRLLALLIEEAR-K--GLDWLGVSFGY-TEELLRFWLRNGFVPVHLSPTRNASSGEYTA 604 (758)
T ss_pred hcCHHHHHHHHHHHHHh-c--CCCEEeeccCC-CHHHHHHHHHcCeEEEEecCccCcCCCceeE
Confidence 99999999999999995 3 67777765544 6788999999999999876665444565433
No 75
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=97.97 E-value=7.9e-05 Score=46.30 Aligned_cols=62 Identities=26% Similarity=0.209 Sum_probs=52.5
Q ss_pred eEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEe--cCCCHHHHHHHHHcCcEEEEEE
Q 043366 57 AIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATV--DVDNLASQKVLQKAGFKREGVL 120 (145)
Q Consensus 57 ~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~--~~~N~~a~~~~~k~Gf~~~~~~ 120 (145)
..+ .++|....||+|+|+++-..+..+|... |...+..+| ++.|++|..|...+||..+|+-
T Consensus 85 ~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~a--gy~~~tCEVn~DppnpasdaFHaalGF~eVG~a 149 (167)
T COG3818 85 FYVDRVVVASRARGRGVARALYADLFSYAELA--GYPYLTCEVNLDPPNPASDAFHAALGFHEVGQA 149 (167)
T ss_pred EEEEEEEEEecccccchHHHHHHHHHHHHHhc--CCceEEEEecCCCCChHHHHHhhhcCceEccce
Confidence 444 4678899999999999999999999666 777777665 5579999999999999999963
No 76
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.86 E-value=9.1e-05 Score=53.37 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=64.5
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCC----CCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCH
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDC----NKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNL 103 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~----~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~ 103 (145)
.-++++..+.++++-..+.+....- -...+-.++.+.|+|||+|+.++|+...++-..+. |..-..+..
T Consensus 39 ~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~k--G~p~s~L~P----- 111 (389)
T COG4552 39 PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARK--GYPVSALHP----- 111 (389)
T ss_pred CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHc--CCeeEEecc-----
Confidence 4567788889998888776442211 01213336778999999999999999999998777 777666533
Q ss_pred HHHHHHHHcCcEEEEEEE
Q 043366 104 ASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 104 ~a~~~~~k~Gf~~~~~~~ 121 (145)
.+.++|+|.||..-+...
T Consensus 112 ~s~~iYrKfGye~asn~~ 129 (389)
T COG4552 112 FSGGIYRKFGYEYASNYH 129 (389)
T ss_pred CchhhHhhccccccceEE
Confidence 577899999999887644
No 77
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.75 E-value=0.0034 Score=41.86 Aligned_cols=107 Identities=10% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCCC-----------------CCceeEE-EEEECcCccC------CCHHHHHHHHHHH
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGDC-----------------NKCRAIL-GYVVASKYWG------KGIATRAVKMVTG 82 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~~-----------------~~~~~~i-~~~v~~~~rg------~G~g~~l~~~~~~ 82 (145)
+..+++...+|+++|++.+.+..... ....+|+ -++|+++..+ .-+...|+..+.+
T Consensus 44 ~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e 123 (182)
T PF00765_consen 44 DAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVE 123 (182)
T ss_dssp T-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHH
T ss_pred CCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHH
Confidence 44555566689999999999754432 1356888 6999887432 2467899999999
Q ss_pred HHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEec
Q 043366 83 IIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLL 139 (145)
Q Consensus 83 ~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~ 139 (145)
+|..+ |++.+..-+ ..+..+++++.||.....-+. ...+|...-...+.+.
T Consensus 124 ~a~~~--gi~~~v~V~---~~~~~r~l~r~G~~~~~lG~~-~~~~~~~~~a~~i~v~ 174 (182)
T PF00765_consen 124 FALSN--GIRHIVGVV---DPAMERILRRAGWPVRRLGPP-RSIGGERVVALLIPVS 174 (182)
T ss_dssp HHHCT--T-SEEEEEE---EHHHHHHHHHCT-EEEESSEE-EEETTEEEEEEEEE-S
T ss_pred HHHHC--CCCEEEEEE---ChHHHHHHHHcCCceEECCCC-eeeCCeEEEEEEEECC
Confidence 99888 999999877 457899999999987654332 2245654444444443
No 78
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.38 E-value=0.0046 Score=38.72 Aligned_cols=66 Identities=9% Similarity=-0.028 Sum_probs=50.7
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEe
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATV 98 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~ 98 (145)
....+++..+|++||+.......... ...-..++|+++..+.|+.++..++++|.++ |++.+.+..
T Consensus 70 ~~~l~~~~~~g~~va~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~--g~~~~d~g~ 135 (142)
T PF13480_consen 70 RLRLFVLYDGGEPVAFALGFRHGGTL----YYWYGGYDPEYRKYSPGRLLLWEAIRWAIER--GLRYFDFGG 135 (142)
T ss_pred CEEEEEEEECCEEEEEEEEEEECCEE----EEEEEEECHhhHhCCHHHHHHHHHHHHHHHC--CCCEEEECC
Confidence 34556667799999999777655431 2223446999999999999999999999888 888887755
No 79
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.26 E-value=0.00056 Score=38.10 Aligned_cols=52 Identities=21% Similarity=0.143 Sum_probs=34.5
Q ss_pred EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHc
Q 043366 60 GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKA 112 (145)
Q Consensus 60 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~ 112 (145)
.++|+|.+|++|||++|+..+-....--. .+.+-.+...+......+|.++.
T Consensus 10 RIWV~~~~RR~GIAt~Lld~ar~~~iyG~-~l~~~~iAFSqPT~~G~~fA~~y 61 (70)
T PF13880_consen 10 RIWVSPSHRRKGIATRLLDAARENFIYGC-VLPKNEIAFSQPTESGKKFAKKY 61 (70)
T ss_pred EEEeChhhhhhhHHHHHHHHHHHhccCce-EechhheEecCCCHhHHHHHHHH
Confidence 47899999999999999999987643222 23333444444444566666653
No 80
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.16 E-value=0.027 Score=37.49 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=48.4
Q ss_pred CCEEEEEEEEeeCCC---CCCCceeEEEE-EECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHH
Q 043366 36 GNKPIGAILVTPNSG---DCNKCRAILGY-VVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQK 111 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~---~~~~~~~~i~~-~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k 111 (145)
..++|+.+.+..... .....-..+|+ ++.|+|||+|+++.+-..+.+..+.. +-+ ..+. .|..+.++|.+
T Consensus 55 T~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~--~~N-~~~~---~~~~~~~~w~k 128 (181)
T PF06852_consen 55 TDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSV--DDN-SVAQ---GNVKMSNFWHK 128 (181)
T ss_pred CCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccC--CCc-eeee---cCHHHHHHHHH
Confidence 677998888865433 11123367785 58999999999975555555444222 222 3333 35566667666
Q ss_pred -cCcEEEEE
Q 043366 112 -AGFKREGV 119 (145)
Q Consensus 112 -~Gf~~~~~ 119 (145)
.|+...+.
T Consensus 129 ~~G~~~~~h 137 (181)
T PF06852_consen 129 MFGFDDYGH 137 (181)
T ss_pred HhCCCCCcc
Confidence 78877765
No 81
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.14 E-value=0.034 Score=38.80 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=67.0
Q ss_pred ceEEEEe--CCEEEEEEEEeeCCC-----------C---------------CCCceeEE-EEEECcCccCC--------C
Q 043366 29 WFKAICL--GNKPIGAILVTPNSG-----------D---------------CNKCRAIL-GYVVASKYWGK--------G 71 (145)
Q Consensus 29 ~~~~~~~--~~~~vG~~~~~~~~~-----------~---------------~~~~~~~i-~~~v~~~~rg~--------G 71 (145)
..+++.. +|++||.+.+.+... . .....+|+ -++|++++|++ |
T Consensus 56 ~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~ 135 (241)
T TIGR03694 56 VHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSG 135 (241)
T ss_pred cEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCccccccccc
Confidence 3444443 589999999986410 0 01245888 48999999874 1
Q ss_pred --------------------HHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEe
Q 043366 72 --------------------IATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKAT 131 (145)
Q Consensus 72 --------------------~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~ 131 (145)
+...|+..+.+++... |++.+.+.+.+ ...+++.++|+.....-+ -...+|...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~--Gi~~~~~v~~~---~l~r~l~r~G~~~~~lG~-~~~~~G~r~ 209 (241)
T TIGR03694 136 VGVIETEAPFSESERRRFPHIPLGLYLGLIALSSAN--GITHWYAIMEP---RLARLLSRFGIQFRQVGP-PVDYHGLRA 209 (241)
T ss_pred ccccccccccchhhcccCchHHHHHHHHHHHHHHHC--CCcEEEEEeCH---HHHHHHHHhCCceEEcCC-CeeECcEec
Confidence 5577999999999887 99999987744 677899999986654332 222456543
No 82
>PHA00771 head assembly protein
Probab=97.06 E-value=0.0069 Score=37.46 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=74.4
Q ss_pred eEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHH
Q 043366 30 FKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVL 109 (145)
Q Consensus 30 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~ 109 (145)
++.+...|+.=|.+-+.....- +.+..-+.+|++||. -.+.-.+.-+|+.+.. ..+.+..-+...-.-.+-..
T Consensus 40 Y~g~~~~~~yeGivl~~eV~p~----~~ecHa~y~P~fRG~--ya~~~r~F~kwlL~Nt-~f~~vit~vp~kt~~G~vic 112 (151)
T PHA00771 40 YFEVNVHGQFGGIVYYNEIQPL----TFDCHAMYLPEIRGF--SKEIGLAFWRYILTNT-TVQCVTSFAARKFRHGQMYC 112 (151)
T ss_pred EEeecccceeeeEEEEEEeeeE----EEEEEeeeCccccch--hHHHHHHHHHHHhcCC-ceeEEEEecccccccchhhh
Confidence 3444446666666664443322 366677789999964 3388899999998887 66666665655555677788
Q ss_pred HHcCcEEEEEEEeeEEeCCeEeEEEEEEeccCc
Q 043366 110 QKAGFKREGVLRKYITLKGKATDVVMFSLLSTD 142 (145)
Q Consensus 110 ~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~~ 142 (145)
+-+|.+.+|..++++ .++ .++-+|++++++
T Consensus 113 ~lig~rRVG~id~a~-~g~--~~vT~Yq~TR~~ 142 (151)
T PHA00771 113 AMIGLKRVGTIKKYF-KGV--DDVTFYSATREE 142 (151)
T ss_pred hhhCCceeeeHHHHh-cCC--CceEEEEcCHHH
Confidence 889999999999988 444 789999998865
No 83
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.05 E-value=0.0012 Score=49.40 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=56.6
Q ss_pred CCEEEEEEEEeeCCCCC-----CCcee---EE---EEE--E---CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEec
Q 043366 36 GNKPIGAILVTPNSGDC-----NKCRA---IL---GYV--V---ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVD 99 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~~-----~~~~~---~i---~~~--v---~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~ 99 (145)
++-+||+..+....... ...++ ++ |.. | ...+|.+|+|++||..++..|.+. +..+|.+.-.
T Consensus 415 ~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~~~~~~QH~G~G~~L~~~AE~ia~ee--~~~ki~viSg 492 (515)
T COG1243 415 NDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGKREDEWQHRGYGRELLEEAERIAREE--GAKKILVISG 492 (515)
T ss_pred hhhhhheeeecccccchhhhhcccchhhhhhhhccccccccccCcchhhcccHHHHHHHHHHHHHHhh--ccccEEEEec
Confidence 47789999988665532 00111 11 111 1 267899999999999999999888 7777776543
Q ss_pred CCCHHHHHHHHHcCcEEEEE
Q 043366 100 VDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 100 ~~N~~a~~~~~k~Gf~~~~~ 119 (145)
..++..|+|+||...|-
T Consensus 493 ---iG~ReYy~k~GY~~~gp 509 (515)
T COG1243 493 ---IGVREYYRKLGYELDGP 509 (515)
T ss_pred ---ccHHHHHHHhCccccCC
Confidence 46899999999998773
No 84
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.03 E-value=0.0014 Score=47.58 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=43.6
Q ss_pred cCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 65 SKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 65 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
..||.||+|+.||.+++..|++.. |-.++.+.-.. ..+..|.|+||+..|-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EH-gS~KiavISGV---GtR~YY~klGY~LdGP 547 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEH-GSGKIAVISGV---GTRNYYRKLGYELDGP 547 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhc-CCCceEEEecc---chHHHHHhhCeeecCh
Confidence 579999999999999999999988 88888775543 4678999999998773
No 85
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.98 E-value=0.057 Score=36.79 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=63.8
Q ss_pred EEeCCEEEEEEEEeeCCCCC-----------------CCceeEE-EEEECcCcc---CCC----HHHHHHHHHHHHHhhc
Q 043366 33 ICLGNKPIGAILVTPNSGDC-----------------NKCRAIL-GYVVASKYW---GKG----IATRAVKMVTGIIFDE 87 (145)
Q Consensus 33 ~~~~~~~vG~~~~~~~~~~~-----------------~~~~~~i-~~~v~~~~r---g~G----~g~~l~~~~~~~~~~~ 87 (145)
...+|+++|++.+.+..... ....+|+ -++|+++++ +.+ +...|+..+.+++..+
T Consensus 59 ~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~ 138 (207)
T PRK13834 59 ISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMAN 138 (207)
T ss_pred EeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHC
Confidence 33488999999987552221 1346888 499998753 222 5578999999999887
Q ss_pred CCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeE
Q 043366 88 WPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKA 130 (145)
Q Consensus 88 ~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~ 130 (145)
|++.+..-+.+ ...+++.++|+.....-+.. ..+|..
T Consensus 139 --Gi~~~~~v~~~---~~~r~l~r~G~~~~~lG~~~-~~g~~~ 175 (207)
T PRK13834 139 --GYTEIVTATDL---RFERILARAGWPMQRLGEPK-AIGNTM 175 (207)
T ss_pred --CCCEEEEEECH---HHHHHHHHcCCCeEECCCCE-EECCeE
Confidence 99999887744 67789999998765433322 245543
No 86
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.89 E-value=0.0028 Score=47.85 Aligned_cols=93 Identities=14% Similarity=0.294 Sum_probs=70.9
Q ss_pred HHhhhcCCCCceEEEEe-----CCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcc
Q 043366 19 FKNKVINNHPWFKAICL-----GNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQ 92 (145)
Q Consensus 19 ~~~~~~~~~~~~~~~~~-----~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~ 92 (145)
++++...++...|.+.. |+-+||.+.+...+.. ++| .+.+.-.--|+++-+++|..+++.|... |+.
T Consensus 449 V~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk~~~-----w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~--gi~ 521 (574)
T COG3882 449 VRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKKESE-----WFIDTFLMSCRVLGRKVEQRLMNSLEEQALSE--GIN 521 (574)
T ss_pred HHHHhhCCCeEEEEEEeccccccCceEEEEEEEecCCe-----EEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Ccc
Confidence 33333333445555543 7779999998887744 777 4666777889999999999999999877 999
Q ss_pred eEEEEec--CCCHHHHHHHHHcCcEEEE
Q 043366 93 RLEATVD--VDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 93 ~i~~~~~--~~N~~a~~~~~k~Gf~~~~ 118 (145)
.+...=. ..|.+...||++.||+..+
T Consensus 522 tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 522 TIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred eeeeEecccccCCcHHHHHHHhcccccc
Confidence 8877644 4699999999999999655
No 87
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.80 E-value=0.035 Score=34.88 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=53.5
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCC
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVD 101 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 101 (145)
...+.+..+|++||.+.+...+..- -.+-.+.+|++....+|+-++-.-+++|++. ++..+++.=-..
T Consensus 39 t~~~~~~~~~kLiav~v~D~l~~gl----SaVY~fyDPd~~~~SlG~~~iL~eI~~a~~~--~l~y~YLGY~I~ 106 (128)
T PF04377_consen 39 TYHLEYRLDGKLIAVAVVDILPDGL----SAVYTFYDPDYSKRSLGTYSILREIELAREL--GLPYYYLGYWIH 106 (128)
T ss_pred CEEEEEEeCCeEEEEEEeecccchh----hheeeeeCCCccccCcHHHHHHHHHHHHHHc--CCCEEeeCeEeC
Confidence 4555666799999998888776543 3344567999999999999999999999876 999888764433
No 88
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=96.78 E-value=0.0059 Score=43.09 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEeccCcc
Q 043366 71 GIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLLSTDH 143 (145)
Q Consensus 71 G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~~~~~ 143 (145)
+-...++..+.+.|.++ |.++|.+.+..+ ...+|++.||..++..+.++ +|. |.+.|+...+++
T Consensus 21 ~~~~~~~~~~~~~a~~~--~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~f--~g~--~~~~~~~~~~~~ 84 (266)
T TIGR03827 21 NDVEALIPDLDALAKKE--GYTKIIAKVPGS---DKPLFEERGYLEEAKIPGYF--NGH--DAYFMSKYLDED 84 (266)
T ss_pred ccHHHHHHHHHHHHHHc--CCcEEEEEccHH---HHHHHHHCCCeEEEeccccc--CCC--ceEEEEEcCchH
Confidence 44788999999999888 999999999776 47899999999999999776 663 788888776654
No 89
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.074 Score=36.46 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=67.8
Q ss_pred CCceEEEEe-CCEEEEEEEEeeCCCCCCCceeEEE--EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCH
Q 043366 27 HPWFKAICL-GNKPIGAILVTPNSGDCNKCRAILG--YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNL 103 (145)
Q Consensus 27 ~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i~--~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~ 103 (145)
....+..+. +|.+||.....+-... .....-+ ..|.|+.++.|+|-+|-..=-+++..+ |++.+..+.++-|.
T Consensus 45 GGlvlgAf~~dg~lVGls~G~pg~r~--g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~--G~tli~WTfDPl~a 120 (266)
T COG3375 45 GGLVLGAFSADGRLVGLSYGYPGGRG--GSLYLYSHMLGVREEVKGSGLGVALKMKQRERALSM--GYTLIAWTFDPLNA 120 (266)
T ss_pred CCeEEEEEcCCCcEEEEEeccCCcCC--CceeeeeeehhccccccccchhhhhHHHHHHHHHhc--CeeeEEEecccchh
Confidence 566676666 6699999988873222 1112222 358999999999999988888899888 99999999999886
Q ss_pred -HHHHHHHHcCcEEEEEEEeeE
Q 043366 104 -ASQKVLQKAGFKREGVLRKYI 124 (145)
Q Consensus 104 -~a~~~~~k~Gf~~~~~~~~~~ 124 (145)
.++=-+.|+|-.-....++++
T Consensus 121 lNA~fNi~KLGa~artYi~nfY 142 (266)
T COG3375 121 LNARFNISKLGAIARTYIKNFY 142 (266)
T ss_pred hhhhcchhhhceeEEEeecccc
Confidence 344446788876665555544
No 90
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.42 E-value=0.16 Score=34.44 Aligned_cols=101 Identities=11% Similarity=0.189 Sum_probs=67.7
Q ss_pred EEEeCCEEEEEEEEeeCCCCC-----------------CCceeEE-EEEECc--CccCC---C-HHHHHHHHHHHHHhhc
Q 043366 32 AICLGNKPIGAILVTPNSGDC-----------------NKCRAIL-GYVVAS--KYWGK---G-IATRAVKMVTGIIFDE 87 (145)
Q Consensus 32 ~~~~~~~~vG~~~~~~~~~~~-----------------~~~~~~i-~~~v~~--~~rg~---G-~g~~l~~~~~~~~~~~ 87 (145)
+...+|+++|++.+-+....+ +...+|. -++|++ .-++. . .+..++.-+++|+...
T Consensus 57 ~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~ 136 (209)
T COG3916 57 ALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALAR 136 (209)
T ss_pred EEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHc
Confidence 335699999999987643321 1245777 477764 22222 2 3679999999999887
Q ss_pred CCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEe
Q 043366 88 WPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSL 138 (145)
Q Consensus 88 ~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l 138 (145)
|+++|...|. ....+.++++|+..+..-+.. ..++...-...+++
T Consensus 137 --G~~~IvtVt~---~~meril~r~Gw~~~riG~~~-~ig~~~~VA~~l~i 181 (209)
T COG3916 137 --GITGIVTVTD---TGMERILRRAGWPLTRIGPPL-TIGNERAVALLLDI 181 (209)
T ss_pred --CCceEEEEEc---hHHHHHHHHcCCCeEEcCCce-eeCCeeEEEEEeec
Confidence 9999998774 478999999999877653322 23444444444443
No 91
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=96.41 E-value=0.012 Score=36.15 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=48.5
Q ss_pred CCEEEEEEEEeeC-----CCCC---C-Cce-eEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHH
Q 043366 36 GNKPIGAILVTPN-----SGDC---N-KCR-AILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLAS 105 (145)
Q Consensus 36 ~~~~vG~~~~~~~-----~~~~---~-~~~-~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a 105 (145)
.|.++|+.-+... +... . ... +.+.++|+++.|++|+|++|...+++. + +++--.+.++.....-
T Consensus 17 ~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~---e--~~~p~~~a~DrPS~Kl 91 (120)
T PF05301_consen 17 KGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQE---E--NVSPHQLAIDRPSPKL 91 (120)
T ss_pred CceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHH---c--CCCcccceecCCcHHH
Confidence 4678898865422 2111 0 111 345899999999999999999999864 2 4454555577666777
Q ss_pred HHHHHHc
Q 043366 106 QKVLQKA 112 (145)
Q Consensus 106 ~~~~~k~ 112 (145)
.+|.+|.
T Consensus 92 l~Fl~Kh 98 (120)
T PF05301_consen 92 LSFLKKH 98 (120)
T ss_pred HHHHHHh
Confidence 7777764
No 92
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=96.11 E-value=0.23 Score=34.67 Aligned_cols=68 Identities=7% Similarity=-0.088 Sum_probs=53.6
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCC
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDN 102 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N 102 (145)
..+.+..+|++||.+.+...+..- --+-.+.+|++-..++|+-++-.-+++|++. |+..+++.--..+
T Consensus 145 ~~~ey~~~g~LiaVav~D~l~d~l----SAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~--gl~y~YLGY~I~~ 212 (240)
T PRK01305 145 RFIEFRGDGKLVAVAVTDVLDDGL----SAVYTFYDPDEEHRSLGTFAILWQIELAKRL--GLPYVYLGYWIKG 212 (240)
T ss_pred EEEEEEeCCeEEEEEEEeccCCce----eeEEEeeCCCccccCCHHHHHHHHHHHHHHc--CCCeEeeeEEECC
Confidence 445555699999999998777542 3345667999999999999999999999776 9999888754443
No 93
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.87 E-value=0.092 Score=35.08 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=34.2
Q ss_pred EEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 38 KPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 38 ~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
.+||+.+=......+ ..+ -+.+.|.||++|+|+-|+...-..++.+
T Consensus 66 h~vGyFSKEk~s~~~----~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 66 HIVGYFSKEKESWDN----NNLSCILTLPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp EEEEEEEEESS-TT-----EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEEEecccCC----eeEeehhhcchhhhcchhhhhhhhHHHHhhcc
Confidence 478888765554332 566 4788999999999999999988888766
No 94
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=95.76 E-value=0.16 Score=30.47 Aligned_cols=63 Identities=21% Similarity=0.147 Sum_probs=46.0
Q ss_pred EEEeCCEEEEEEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCH
Q 043366 32 AICLGNKPIGAILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNL 103 (145)
Q Consensus 32 ~~~~~~~~vG~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~ 103 (145)
.++.++...|.+.+.+.... .....++ +.|.++.||+|+|..+..++.+- ..++...+.++|+
T Consensus 12 ~~y~~e~y~~~aIvt~~~~~--~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-------~~~L~Wrsr~~n~ 75 (99)
T cd04264 12 AIYLSEGYNAAAIVTYEGVN--NGVPYLDKFAVSSSAQGEGTSDALWRRLRRD-------FPKLFWRSRKTNP 75 (99)
T ss_pred EEEEeCCceEEEEEeccCCC--CCceEEEEEEEchhhhhcChHHHHHHHHHhh-------CCceEEEeCCCCc
Confidence 44456777888877765422 2337774 88999999999999999988843 3467777888875
No 95
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=95.71 E-value=0.31 Score=31.70 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=53.0
Q ss_pred hhHHHHHHhhhcCCC---CceEEEEe--CCEEEEEEEEeeCCCCC---CCceeEEE-EEECcCccCCCHHHHHHHHHHHH
Q 043366 13 EDGINFFKNKVINNH---PWFKAICL--GNKPIGAILVTPNSGDC---NKCRAILG-YVVASKYWGKGIATRAVKMVTGI 83 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~---~~~~~~~~--~~~~vG~~~~~~~~~~~---~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~ 83 (145)
.-..+|++-.+..++ .+..++.. ++++|||++..+..-.- .....+|. ++|+++.|.++++--|++++.+.
T Consensus 59 ~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRR 138 (162)
T PF01233_consen 59 DYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRR 138 (162)
T ss_dssp ---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHH
T ss_pred eCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHH
Confidence 345666666666543 45677765 89999999877542211 12347776 57999999999999999999998
Q ss_pred HhhcCCCcceE
Q 043366 84 IFDEWPHLQRL 94 (145)
Q Consensus 84 ~~~~~~~~~~i 94 (145)
+-.. |+-..
T Consensus 139 vn~~--gI~qA 147 (162)
T PF01233_consen 139 VNLQ--GIWQA 147 (162)
T ss_dssp HHTT--T--EE
T ss_pred hhhc--Cceee
Confidence 8665 54433
No 96
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=95.55 E-value=0.13 Score=37.51 Aligned_cols=93 Identities=9% Similarity=-0.036 Sum_probs=66.4
Q ss_pred ceEEEE-eCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH
Q 043366 29 WFKAIC-LGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ 106 (145)
Q Consensus 29 ~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 106 (145)
..+++. .+|++||.+.+...... ... -..-.++++..+-+..|.-+++++|.++ |++...+.....|....
T Consensus 196 ~l~~a~~~~g~~va~~l~~~~~~~-----~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~--G~~~fDfG~s~~~~G~~ 268 (330)
T TIGR03019 196 EVLTVRLGDGVVASAVLSFYFRDE-----VLPYYAGGLREARDVAANDLMYWELMRRACER--GLRVFDFGRSKRGTGPF 268 (330)
T ss_pred EEEEEEeCCCCEEEEEEEEEeCCE-----EEEEeccChHHHHhhChHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCccH
Confidence 345556 58999987665544322 221 1224688998899999999999999888 99999887665565666
Q ss_pred HHHHHcCcEEEEEEEeeEEeCC
Q 043366 107 KVLQKAGFKREGVLRKYITLKG 128 (145)
Q Consensus 107 ~~~~k~Gf~~~~~~~~~~~~~g 128 (145)
+|=++.|++.+...-.+...+|
T Consensus 269 ~FK~~~G~~~~~l~~~~~~~~~ 290 (330)
T TIGR03019 269 KFKKNWGFEPQPLHYEYLLYEG 290 (330)
T ss_pred HHHhcCCCeeccceEEEEccCC
Confidence 7778899998877665554444
No 97
>PHA01733 hypothetical protein
Probab=95.16 E-value=0.047 Score=35.12 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=52.6
Q ss_pred EEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHH
Q 043366 31 KAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQ 110 (145)
Q Consensus 31 ~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~ 110 (145)
+....+|+++|.++..+.... .++..-+.-.+.-. .+-...++++-.+..+.. ....+.-.|.+.|..++++.+
T Consensus 50 ~~~~~nG~l~aI~Gv~~d~~~---~vG~pWlV~T~~v~--k~~~~f~re~r~~l~e~~-~Yp~LwNyV~~~N~~hir~Lk 123 (153)
T PHA01733 50 AFVAPDGSLAGVAGLVEDMGN---RVGEIWMVCTPAIE--KNPIALLRGAKWWLPKSR-NYDLLWNIVDKRNLVHRKLLR 123 (153)
T ss_pred EEEecCCcEEEEecccccccC---CCCceeEEecHHhH--hCCHHHHHHHHHHHHHhc-cccHHHHhHhcccHHHHHHHH
Confidence 555559999999999873222 11222222122111 133444444444443322 566788889999999999999
Q ss_pred HcCcEEEEEEE
Q 043366 111 KAGFKREGVLR 121 (145)
Q Consensus 111 k~Gf~~~~~~~ 121 (145)
.+||+.....+
T Consensus 124 ~lGF~f~~~~~ 134 (153)
T PHA01733 124 KLGFKGLRYVQ 134 (153)
T ss_pred HcCceeecccc
Confidence 99999876544
No 98
>PHA00432 internal virion protein A
Probab=95.05 E-value=0.5 Score=29.97 Aligned_cols=84 Identities=12% Similarity=-0.009 Sum_probs=48.7
Q ss_pred CCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEE-EC--cCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCC
Q 043366 26 NHPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYV-VA--SKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDN 102 (145)
Q Consensus 26 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~-v~--~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N 102 (145)
++..++.+..+|++++.++ ... ...+.++-- |. |....+.+ .+.+....+...+ ....+.-.|.+.|
T Consensus 35 ~s~~~~~~~~~G~~~aI~G----n~G--~~vW~v~T~~v~~~~~~~~reF-~k~~~~~ld~ml~---~yp~LwNyV~~~N 104 (137)
T PHA00432 35 PDSECVTLSLDGFVLAIGG----NQG--DQVWFVTSDQVWRLTKKEKREF-RKLIMEYRDMMLD---QYPSLWNYVWVGN 104 (137)
T ss_pred CCceEEEEecCCeEEEEec----CCC--CceEEEecHHhhhCChhhhHHH-HHHHHHHHHHHHH---hhhhhheeeecCC
Confidence 3456788888999998884 111 111333211 21 11111111 2222333333333 3556778899999
Q ss_pred HHHHHHHHHcCcEEEEE
Q 043366 103 LASQKVLQKAGFKREGV 119 (145)
Q Consensus 103 ~~a~~~~~k~Gf~~~~~ 119 (145)
..+++|.+.+||+....
T Consensus 105 ~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 105 KSHIRFLKSIGAVFHNE 121 (137)
T ss_pred HHHHHHHHHcCeeeecc
Confidence 99999999999998765
No 99
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=94.83 E-value=0.16 Score=36.12 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.7
Q ss_pred CCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 36 GNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
.-.+||+.+=......+ ..+ -+.+.|.||++|+|+-|+...-..++.+
T Consensus 139 g~h~vGYFSKEK~s~~~----nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~E 187 (290)
T PLN03238 139 GSHIVGYFSKEKVSAED----YNLACILTLPPYQRKGYGKFLISFAYELSKRE 187 (290)
T ss_pred CcEEEEEeceeccccCC----CcEEEEEecChhhhccHhHhHHHHHhHHhhcc
Confidence 34588887665544332 455 4678999999999999999888887665
No 100
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=94.64 E-value=0.52 Score=28.22 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=40.4
Q ss_pred EeCCEEEEEEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCH
Q 043366 34 CLGNKPIGAILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNL 103 (145)
Q Consensus 34 ~~~~~~vG~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~ 103 (145)
+.++..=|.+.+.+.... ....++ +.|.++.||+|+|..++.++.+- ..++...+.++|+
T Consensus 15 y~~e~y~~~aivt~~~~~---~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d-------~~~L~Wrsr~~n~ 75 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVD---GVPYLDKFAVSSSAQGEGTGEALWRRLRRD-------FPKLFWRSRSTNP 75 (99)
T ss_pred EEeCCCcEEEEEeccCCC---CceEEEEEEEchhhhhcChHHHHHHHHHhh-------CCceEEEeCCCCc
Confidence 334444455555444311 226774 88999999999999999988742 2357777888875
No 101
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.36 E-value=0.36 Score=38.76 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=26.0
Q ss_pred EEEECcCccCCCHHHHHHHHHHHHHhhcC
Q 043366 60 GYVVASKYWGKGIATRAVKMVTGIIFDEW 88 (145)
Q Consensus 60 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~ 88 (145)
.+.|+|+|++.|||++.++.+.+|...+.
T Consensus 619 RIAvhP~y~~MGYGsrAvqLL~~y~eG~~ 647 (1011)
T KOG2036|consen 619 RIAVHPEYQKMGYGSRAVQLLTDYFEGKF 647 (1011)
T ss_pred EEEeccchhccCccHHHHHHHHHHHhccC
Confidence 68899999999999999999999986553
No 102
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.61 E-value=0.054 Score=40.85 Aligned_cols=60 Identities=22% Similarity=0.317 Sum_probs=42.3
Q ss_pred eEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEE-ecCCCHHH----HHHHHHcCcEEEE
Q 043366 57 AIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEAT-VDVDNLAS----QKVLQKAGFKREG 118 (145)
Q Consensus 57 ~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~-~~~~N~~a----~~~~~k~Gf~~~~ 118 (145)
+.| ..+|+|+||+-|+|...+.++.+|..++ .+..+.-. -..+-.+. .-|+++.||+..-
T Consensus 242 ariarvvvhpdyr~dglg~~sv~~a~ewI~eR--riPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSVIAALEWIIER--RIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hheeEEEeccccccCccchhHHHHHHHHHHHh--hChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 455 4789999999999999999999999887 45554433 11111111 1489999998653
No 103
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.44 E-value=0.25 Score=37.87 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=35.1
Q ss_pred CEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 37 NKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 37 ~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
-.+||+.+=....... ..+ -+.+.|.||++|+|+-|+...-...+.+
T Consensus 369 ~HiVGYFSKEK~S~~~----nNLACILtLPpyQRKGYGklLIdfSYeLSrrE 416 (552)
T PTZ00064 369 CHIVGYFSKEKVSLLH----YNLACILTLPCYQRKGYGKLLVDLSYKLSLKE 416 (552)
T ss_pred cEEEEEecccccCccc----CceEEEEecchhhhcchhhhhhhhhhhhhhhc
Confidence 4688887655444332 456 4678999999999999999888887665
No 104
>PLN03239 histone acetyltransferase; Provisional
Probab=93.40 E-value=0.31 Score=35.67 Aligned_cols=47 Identities=15% Similarity=0.025 Sum_probs=34.0
Q ss_pred CEEEEEEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 37 NKPIGAILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 37 ~~~vG~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
-.+||+.+=......+ ..++ +.+.|.||++|+|+-|+...-..++.+
T Consensus 198 ~h~vGYFSKEK~s~~~----~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~E 245 (351)
T PLN03239 198 FHPVGYYSKEKYSDVG----YNLACILTFPAHQRKGYGRFLIAFSYELSKKE 245 (351)
T ss_pred eEEEEEeeecccCCCC----CceEEEEecChhhhcchhhhhHhhhhHhhhhc
Confidence 4577776654443322 4564 678999999999999999888877665
No 105
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=92.76 E-value=0.68 Score=34.04 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=36.1
Q ss_pred CCceEEEEe--CCEEEEEEEEeeCCCCC--------------------------------CCceeEE-EEEECcCccCCC
Q 043366 27 HPWFKAICL--GNKPIGAILVTPNSGDC--------------------------------NKCRAIL-GYVVASKYWGKG 71 (145)
Q Consensus 27 ~~~~~~~~~--~~~~vG~~~~~~~~~~~--------------------------------~~~~~~i-~~~v~~~~rg~G 71 (145)
..+.|++++ +|++||.+++...-... .....++ +++++|+||+.|
T Consensus 58 ~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~ 137 (342)
T PF04958_consen 58 EGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGG 137 (342)
T ss_dssp -EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSH
T ss_pred cceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCc
Confidence 346777776 79999999987421110 0122677 799999999999
Q ss_pred HHHHHHHHHHHH
Q 043366 72 IATRAVKMVTGI 83 (145)
Q Consensus 72 ~g~~l~~~~~~~ 83 (145)
.|+.|-+.-.-+
T Consensus 138 ~G~lLSr~RfLF 149 (342)
T PF04958_consen 138 NGRLLSRSRFLF 149 (342)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 998776654333
No 106
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=92.45 E-value=0.24 Score=37.59 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=34.3
Q ss_pred CEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 37 NKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 37 ~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
-.+||+.+=......+ ..+ -+.+.|.||++|+|+-|+...-...+.+
T Consensus 291 ~h~vGyFSKEk~s~~~----~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~e 338 (450)
T PLN00104 291 CHMVGYFSKEKHSEED----YNLACILTLPPYQRKGYGKFLIAFSYELSKRE 338 (450)
T ss_pred cEEEEEecccccCcCC----CceEEEEecchhhhcchhheehhheehhhhcc
Confidence 4688887655444432 456 4678999999999999888777776554
No 107
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=92.34 E-value=0.87 Score=33.36 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=36.8
Q ss_pred CCceEEEEe--CCEEEEEEEEeeCCCC--------------------------------CCCceeEE-EEEECcCccCCC
Q 043366 27 HPWFKAICL--GNKPIGAILVTPNSGD--------------------------------CNKCRAIL-GYVVASKYWGKG 71 (145)
Q Consensus 27 ~~~~~~~~~--~~~~vG~~~~~~~~~~--------------------------------~~~~~~~i-~~~v~~~~rg~G 71 (145)
..+.|++++ .|++||.+++...-.. +.....++ +++++|+||+.|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 456777776 7999999997732110 00122666 799999999999
Q ss_pred HHHHHHHH
Q 043366 72 IATRAVKM 79 (145)
Q Consensus 72 ~g~~l~~~ 79 (145)
.|+.|-+.
T Consensus 134 ~G~LLSr~ 141 (335)
T TIGR03243 134 NGRLLSRS 141 (335)
T ss_pred chhhHHHH
Confidence 99866554
No 108
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=92.33 E-value=0.82 Score=33.77 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=38.9
Q ss_pred EEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecC
Q 043366 39 PIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDV 100 (145)
Q Consensus 39 ~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~ 100 (145)
++|+..++....-......-+ -+.|.|.||++|+|+.++..+....... -+-+.++|..
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~---p~v~DiTVEd 259 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE---PTVLDITVED 259 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccC---CceeEEEecC
Confidence 667777775544321233555 4778999999999999999999655343 2334444543
No 109
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=92.01 E-value=1.3 Score=32.46 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=36.7
Q ss_pred CCceEEEEe--CCEEEEEEEEeeCCCC--------------------------------CCCceeEE-EEEECcCccCCC
Q 043366 27 HPWFKAICL--GNKPIGAILVTPNSGD--------------------------------CNKCRAIL-GYVVASKYWGKG 71 (145)
Q Consensus 27 ~~~~~~~~~--~~~~vG~~~~~~~~~~--------------------------------~~~~~~~i-~~~v~~~~rg~G 71 (145)
..+.|++++ .|++||.+++...-.. +.....++ +++++|+||+.|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 456777775 7999999998732110 00122666 799999999999
Q ss_pred HHHHHHHH
Q 043366 72 IATRAVKM 79 (145)
Q Consensus 72 ~g~~l~~~ 79 (145)
.|+.|-+.
T Consensus 135 ~G~lLSr~ 142 (336)
T TIGR03245 135 AAELLSRA 142 (336)
T ss_pred chhHHHHH
Confidence 99866554
No 110
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=91.82 E-value=1.3 Score=32.46 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=36.4
Q ss_pred CCceEEEEe--CCEEEEEEEEeeCCCC--------------------------------CCCceeEE-EEEECcCccCCC
Q 043366 27 HPWFKAICL--GNKPIGAILVTPNSGD--------------------------------CNKCRAIL-GYVVASKYWGKG 71 (145)
Q Consensus 27 ~~~~~~~~~--~~~~vG~~~~~~~~~~--------------------------------~~~~~~~i-~~~v~~~~rg~G 71 (145)
..+.|++++ .|++||.+++...-.. +.....++ +++++|+||+.|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 456777776 7999999998732110 00122666 789999999999
Q ss_pred HHHHHHHH
Q 043366 72 IATRAVKM 79 (145)
Q Consensus 72 ~g~~l~~~ 79 (145)
.|+.|-+.
T Consensus 134 ~G~LLSr~ 141 (336)
T TIGR03244 134 NGRLLSKS 141 (336)
T ss_pred chhhHHHH
Confidence 99866543
No 111
>PRK10456 arginine succinyltransferase; Provisional
Probab=91.79 E-value=1.2 Score=32.70 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=36.5
Q ss_pred CCceEEEEe--CCEEEEEEEEeeCCCC--------------------------------CCCceeEE-EEEECcCccCCC
Q 043366 27 HPWFKAICL--GNKPIGAILVTPNSGD--------------------------------CNKCRAIL-GYVVASKYWGKG 71 (145)
Q Consensus 27 ~~~~~~~~~--~~~~vG~~~~~~~~~~--------------------------------~~~~~~~i-~~~v~~~~rg~G 71 (145)
..+.|++++ +|++||.+++...-.. +.....++ +++++|+||+.|
T Consensus 56 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~ 135 (344)
T PRK10456 56 QGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEG 135 (344)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCC
Confidence 456777775 7999999997732110 00122566 789999999999
Q ss_pred HHHHHHHH
Q 043366 72 IATRAVKM 79 (145)
Q Consensus 72 ~g~~l~~~ 79 (145)
.|+.|-+.
T Consensus 136 ~G~LLSr~ 143 (344)
T PRK10456 136 NGYLLSKS 143 (344)
T ss_pred chhHHHHH
Confidence 99866554
No 112
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=0.71 Score=31.89 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=35.5
Q ss_pred eEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHc
Q 043366 57 AILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKA 112 (145)
Q Consensus 57 ~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~ 112 (145)
+.+.++|+++.|++|.|.+|...+++. + +.+-=.+.++......++|..|.
T Consensus 110 cILDFyVheS~QR~G~G~~lfdyMl~k---E--~vephQ~a~DrPS~kLl~Fm~kh 160 (264)
T KOG4601|consen 110 CILDFYVHESEQRSGNGFKLFDYMLKK---E--NVEPHQCAFDRPSAKLLQFMEKH 160 (264)
T ss_pred eEEEEEeehhhhhcCchHHHHHHHHHh---c--CCCchheeccChHHHHHHHHHHh
Confidence 555999999999999999999988863 2 44433444444444556666653
No 113
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=90.39 E-value=1 Score=29.78 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=40.2
Q ss_pred ceeEEEEE-ECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcC
Q 043366 55 CRAILGYV-VASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAG 113 (145)
Q Consensus 55 ~~~~i~~~-v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~G 113 (145)
-.+|+|++ |.|+.+|.||+..| ..+.-.. +++ ++.....+|. .+.++.+++++
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvL-q~L-gVPF~FGtVR---~al~~Hv~R~~ 137 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVL-QEL-GVPFGFGTVR---HALRNHVERLC 137 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHH-Hhc-CCCeecccch---HHHHHHHHHHh
Confidence 35889865 99999999999976 4555555 555 8998888884 46777777776
No 114
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=90.18 E-value=0.55 Score=35.03 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=29.8
Q ss_pred EEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 42 AILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 42 ~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
++++...+... .....++ +.+.|.||++|+|+-|+..--...+.+
T Consensus 247 ~VGYFSKEK~s-~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E 292 (396)
T KOG2747|consen 247 CVGYFSKEKES-SENYNLACILTLPPYQRKGYGKLLIDFSYELSRRE 292 (396)
T ss_pred eeeeecccccc-ccccceeeeeecChhhhcccchhhhhhhhhhhccc
Confidence 44444444332 1125564 678999999999999988877666544
No 115
>PRK14852 hypothetical protein; Provisional
Probab=90.11 E-value=3.2 Score=34.94 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=70.0
Q ss_pred EEEEeCCEEEEEEEEeeCCCCC------------------CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCc
Q 043366 31 KAICLGNKPIGAILVTPNSGDC------------------NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHL 91 (145)
Q Consensus 31 ~~~~~~~~~vG~~~~~~~~~~~------------------~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~ 91 (145)
|+....+++||..++....... +...+|+ .+.++++.+.+-+--.+++.+..|+... ++
T Consensus 78 ~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~--~~ 155 (989)
T PRK14852 78 FIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMS--EV 155 (989)
T ss_pred EEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHc--CC
Confidence 4444457777777776554421 1345777 4778888888777788888888888654 99
Q ss_pred ceEEEEecCCCHHHHHHHH-HcCcEEEEEEEeeEEeCCeEeEEEEEEe
Q 043366 92 QRLEATVDVDNLASQKVLQ-KAGFKREGVLRKYITLKGKATDVVMFSL 138 (145)
Q Consensus 92 ~~i~~~~~~~N~~a~~~~~-k~Gf~~~~~~~~~~~~~g~~~~~~~~~l 138 (145)
..+.+.| |+.-..||+ -+||+..+..+.+...+ .+.+.+.+
T Consensus 156 dd~~i~V---nPkH~~FY~r~l~f~~ig~~r~~p~Vn---aPAvll~~ 197 (989)
T PRK14852 156 DDILVTV---NPKHVKFYTDIFLFKPFGEVRHYDTVD---APAVALRI 197 (989)
T ss_pred CeEEEEE---CcchHHHHHHHhCCccccccccCCCCC---cchhheec
Confidence 9999999 556778999 58999999877665443 34444443
No 116
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=90.05 E-value=4.5 Score=27.59 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEec
Q 043366 71 GIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLL 139 (145)
Q Consensus 71 G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~ 139 (145)
|.|-.++..+++......+....+.+........-+++...+||....+ ..+.-+|.++..+.-+..
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E--~lv~e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDE--DLVEENGRFYEIIVAERG 140 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEE--EEEEETTEEEEEEEEEES
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEe--EEEeECCEEEEEEEEEeC
Confidence 7788889999988766544667888888877778889999999999874 455567887777665543
No 117
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=89.88 E-value=2 Score=25.51 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=33.9
Q ss_pred CCceEEEEeCC-EEEEEEEEeeCCCCC-------------------CCceeEEE-EEECcCccCCCHHHHHH
Q 043366 27 HPWFKAICLGN-KPIGAILVTPNSGDC-------------------NKCRAILG-YVVASKYWGKGIATRAV 77 (145)
Q Consensus 27 ~~~~~~~~~~~-~~vG~~~~~~~~~~~-------------------~~~~~~i~-~~v~~~~rg~G~g~~l~ 77 (145)
....+++..++ ++||.+.+....... ....+|++ ++|+|+||+......|.
T Consensus 29 ~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 29 HSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 44455565544 499999987543321 12457885 88999999987766654
No 118
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=89.43 E-value=3.3 Score=29.68 Aligned_cols=65 Identities=12% Similarity=-0.011 Sum_probs=42.0
Q ss_pred ceEEEEe-CCEEEEEEEEeeCCCCCCCceeEEEEEE-CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEec
Q 043366 29 WFKAICL-GNKPIGAILVTPNSGDCNKCRAILGYVV-ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVD 99 (145)
Q Consensus 29 ~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i~~~v-~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~ 99 (145)
..+++.. +|+++|++.+.+.... ..+.+.+.- +++ --+|+-..|+..+++.+++. |+..+.+...
T Consensus 181 ~~~~~~~~dgki~af~~~~~~~~~---~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~--g~~~lnLg~a 247 (299)
T PF09924_consen 181 RGFVARVADGKIVAFAIGSPLGGR---DGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAE--GVEYLNLGFA 247 (299)
T ss_dssp EEEEEEE-TTEEEEEEEEEEEE-T---TEEEEEEEEE-TT--STTHHHHHHHHHHHHS--T--T--EEE----
T ss_pred eEEEEEECCCcEEEEEEEEEccCC---ccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhC--CceEEEcccc
Confidence 4556666 9999999999988732 225556664 344 34599999999999999766 8888875443
No 119
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=87.57 E-value=3.9 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.057 Sum_probs=23.0
Q ss_pred cceEEEEecCCCHHHHHHHHHcCcEEE
Q 043366 91 LQRLEATVDVDNLASQKVLQKAGFKRE 117 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k~Gf~~~ 117 (145)
...+.=.|..+|..+++|.+.+|++-.
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~ 82 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFH 82 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEc
Confidence 345777899999999999999999854
No 120
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=86.03 E-value=7 Score=33.56 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=46.8
Q ss_pred CCEEEEEEEEeeCCCCCCCceeEEEEEE-CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecC
Q 043366 36 GNKPIGAILVTPNSGDCNKCRAILGYVV-ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDV 100 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~~~~~~~~i~~~v-~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~ 100 (145)
+|+++|++++.+..... +.+.++- +|+. -+|+..-|+..++.++++. |++.+.+..-+
T Consensus 429 ~G~i~af~s~~p~~~~g----~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~--G~~~~sLg~AP 487 (1094)
T PRK02983 429 DGQVVALLSFVPWGRRG----LSLDLMRRSPDA-PNGVIELMVAELALEAESL--GITRISLNFAV 487 (1094)
T ss_pred CCeEEEEEEEeeeCCCC----EEEEecccCCCC-CCCHHHHHHHHHHHHHHHc--CCCEEEechhh
Confidence 79999999999965321 6667665 4554 6799999999999999888 99998887655
No 121
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.93 E-value=8.8 Score=26.97 Aligned_cols=61 Identities=7% Similarity=-0.071 Sum_probs=49.5
Q ss_pred CCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCC
Q 043366 36 GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDN 102 (145)
Q Consensus 36 ~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N 102 (145)
.|++|+.+.....+... -.+-.+-+|++....+|+-++..=+.+|++. ++..+++.=-.++
T Consensus 159 ~G~LvAVavtDvL~dGl----SsVY~FydPd~s~~SLGt~~iL~~I~~aq~~--~l~yvYLGYwI~~ 219 (253)
T COG2935 159 EGKLVAVAVTDVLPDGL----SSVYTFYDPDMSKRSLGTLSILDQIAIAQRL--GLPYVYLGYWIKG 219 (253)
T ss_pred CCcEEEEEeeecccCcc----eeEEEEeCCChhhhcchHHHHHHHHHHHHHh--CCCeEEEEEEECC
Confidence 79999988888777653 3445667999999999999999999999776 9999998755543
No 122
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=84.52 E-value=13 Score=26.95 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=59.0
Q ss_pred EEEEeCCEEEEEEEEeeCCCCC--CCceeEE-EEEECcCccCCCHHHHHHHHHHHHHh----h----cCCCcceEEEEec
Q 043366 31 KAICLGNKPIGAILVTPNSGDC--NKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIF----D----EWPHLQRLEATVD 99 (145)
Q Consensus 31 ~~~~~~~~~vG~~~~~~~~~~~--~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~----~----~~~~~~~i~~~~~ 99 (145)
.++...+.||+.+++.+..... ......| |+.++.=|..-|+-..|+.=++-.++ + ..-+-=++.+++.
T Consensus 172 ~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~Y 251 (304)
T PF11124_consen 172 HIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVY 251 (304)
T ss_pred eEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEee
Confidence 3444578999999999876544 1234556 78899999988886655544422222 1 1001124566677
Q ss_pred CCCHHHHHHHHHcCcEEEE
Q 043366 100 VDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 100 ~~N~~a~~~~~k~Gf~~~~ 118 (145)
.......+..++.||+...
T Consensus 252 SFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 252 SFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred eccHHHHHHHHHCCCeeee
Confidence 7788999999999999887
No 123
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=83.45 E-value=0.84 Score=33.46 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=26.3
Q ss_pred EEEEEEEeeCCCCCCCceeEEE-EEECcCccCCCHHHHHHHHH
Q 043366 39 PIGAILVTPNSGDCNKCRAILG-YVVASKYWGKGIATRAVKMV 80 (145)
Q Consensus 39 ~vG~~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~ 80 (145)
+||+.+=......+ ..++ +.+.|.||++|+|.-|+...
T Consensus 249 ~vGyFSKEK~S~~~----yNLaCILtLP~yQRrGYG~lLIdFS 287 (395)
T COG5027 249 LVGYFSKEKESEQD----YNLACILTLPPYQRRGYGKLLIDFS 287 (395)
T ss_pred eeeeechhhccccc----CceEEEEecChhHhcccceEeeeee
Confidence 77776655544443 6664 56799999999998665443
No 124
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=83.30 E-value=9.7 Score=24.48 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=54.8
Q ss_pred CCceEEEE-eCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHH
Q 043366 27 HPWFKAIC-LGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLAS 105 (145)
Q Consensus 27 ~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a 105 (145)
..+.|+.. .++++.||+--......+ ..+..+.=.+.++-+......-|+.++.+-|-+. ++-.+.+.+.+ .-
T Consensus 54 sgHSFvA~~e~~~~~GfvLAQaVWQGd-rptVlV~ri~~~~~~~~~~~~GLLrAvvKSAYDa--~VYEv~l~l~p---~l 127 (161)
T PF09390_consen 54 SGHSFVAEDEGGELQGFVLAQAVWQGD-RPTVLVRRILLAPGEPEEVYEGLLRAVVKSAYDA--GVYEVHLHLDP---EL 127 (161)
T ss_dssp CS--EEEE-ETTEEEEEEEEEEEE-SS-SEEEEEEEE---EESSHHHHHHHHHHHHHHHHHT--T-SEEEE---T---HH
T ss_pred cCCcEEEEccCCceeeeeehhHHhcCC-CceEEEEEeecCCCCcHHHHHHHHHHHHHhhhcc--ceEEEEeeCCH---HH
Confidence 45677777 799999999887776665 4445554444555666788888999999988777 89999998877 55
Q ss_pred HHHHHHcCcEEEEE
Q 043366 106 QKVLQKAGFKREGV 119 (145)
Q Consensus 106 ~~~~~k~Gf~~~~~ 119 (145)
....+.-||...+.
T Consensus 128 ~~A~~a~~~~~~~~ 141 (161)
T PF09390_consen 128 EAAARAEGFRLGGQ 141 (161)
T ss_dssp HHHHHHTT----S-
T ss_pred HHHHhhcccccCCe
Confidence 66778888887763
No 125
>PHA02769 hypothetical protein; Provisional
Probab=82.11 E-value=2 Score=26.41 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhh--cCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEE
Q 043366 73 ATRAVKMVTGIIFD--EWPHLQRLEATVDVDNLASQKVLQKAGFKREGVL 120 (145)
Q Consensus 73 g~~l~~~~~~~~~~--~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~ 120 (145)
|-.++..+...+.+ .. |+.-+..--.++ -|.++|.|.||+.+|..
T Consensus 94 gd~lvnfl~~l~~k~~~d-g~evlwtlgfpd--hsnaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKD-GFEVLWTLGFPD--HSNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcC-CeEEEEEecCCC--cchhHHhhhhhhHhccc
Confidence 45566665554422 22 555444433444 57789999999998853
No 126
>PRK00756 acyltransferase NodA; Provisional
Probab=79.50 E-value=7.6 Score=25.65 Aligned_cols=52 Identities=23% Similarity=0.212 Sum_probs=37.0
Q ss_pred ceeEEEEE-ECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHc
Q 043366 55 CRAILGYV-VASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKA 112 (145)
Q Consensus 55 ~~~~i~~~-v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~ 112 (145)
-.+++|++ |.|+..|.||+..+ ..+.-.. +++ ++.....+|. .+.++-.+++
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvL-q~L-gVPF~FGtVR---~al~~Hv~R~ 136 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVL-QEL-GVPFAFGTVR---HALRNHVERL 136 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHH-Hhc-CCCeecccch---HHHHHHHHHH
Confidence 45888865 99999999999877 4555554 455 8888777774 3556666664
No 127
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=79.20 E-value=6.1 Score=24.87 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=41.3
Q ss_pred CccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEE
Q 043366 66 KYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVV 134 (145)
Q Consensus 66 ~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~ 134 (145)
+-||-|+|++++..+.+.. |. .+.+...-.|..|-....|.|-..-..-.+....+-...|.+
T Consensus 6 DGQGGGiG~~iv~~lr~~~----~~--~~eI~AlGTNa~AT~~MlKaGA~~gATGENaIv~n~~~aDiI 68 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKEL----PE--EVEIIALGTNAIATSAMLKAGANEGATGENAIVVNARKADII 68 (131)
T ss_pred eCCCChhHHHHHHHHHHhC----CC--CcEEEEEehhHHHHHHHHHcCCCCcccccchheeccCCCCEE
Confidence 5789999999999887543 22 244444555999999999999776555444443333333433
No 128
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=78.78 E-value=30 Score=29.21 Aligned_cols=76 Identities=8% Similarity=0.114 Sum_probs=47.3
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcc
Q 043366 13 EDGINFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQ 92 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~ 92 (145)
++....+...... +.....+..+|+++|+..+...-..+ ...+++.+++. |++
T Consensus 689 ~~i~~~~~~~e~~-g~tvv~v~vn~~l~gv~~l~D~vr~~------------------------a~~av~~Lk~~--Gi~ 741 (951)
T KOG0207|consen 689 DDILDALTESERK-GQTVVYVAVNGQLVGVFALEDQVRPD------------------------AALAVAELKSM--GIK 741 (951)
T ss_pred hhHHHhhhhHhhc-CceEEEEEECCEEEEEEEeccccchh------------------------HHHHHHHHHhc--Cce
Confidence 3444444443333 34455566699999999998776654 34444455454 755
Q ss_pred eEEEEecCCCHHHHHHHHHcCcEE
Q 043366 93 RLEATVDVDNLASQKVLQKAGFKR 116 (145)
Q Consensus 93 ~i~~~~~~~N~~a~~~~~k~Gf~~ 116 (145)
-+.+ +...+.+|.+..+.+|+..
T Consensus 742 v~mL-TGDn~~aA~svA~~VGi~~ 764 (951)
T KOG0207|consen 742 VVML-TGDNDAAARSVAQQVGIDN 764 (951)
T ss_pred EEEE-cCCCHHHHHHHHHhhCcce
Confidence 4443 6666668888888888544
No 129
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=78.22 E-value=9.1 Score=28.47 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=59.8
Q ss_pred hHHHHHHhhhcCC---CCceEEEEe--CCEEEEEEEEeeCCCCC---CCceeEEE-EEECcCccCCCHHHHHHHHHHHHH
Q 043366 14 DGINFFKNKVINN---HPWFKAICL--GNKPIGAILVTPNSGDC---NKCRAILG-YVVASKYWGKGIATRAVKMVTGII 84 (145)
Q Consensus 14 ~~~~~~~~~~~~~---~~~~~~~~~--~~~~vG~~~~~~~~~~~---~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~ 84 (145)
-..+|++..+..+ ..|..++.. ++++|||++..+..-.. -....+|. ++|+.+-|+++++--|++++.+.+
T Consensus 117 Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRv 196 (421)
T KOG2779|consen 117 YSPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRV 196 (421)
T ss_pred ccHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHh
Confidence 3456666666653 345666655 67999999876542211 02247885 679999999999999999999876
Q ss_pred hhcCCCcceE---EEEecCCCHHHHHHHHH
Q 043366 85 FDEWPHLQRL---EATVDVDNLASQKVLQK 111 (145)
Q Consensus 85 ~~~~~~~~~i---~~~~~~~N~~a~~~~~k 111 (145)
--. |+-+. ...+.+.+.+..+.+.+
T Consensus 197 nl~--gIfqA~yTaGvvLp~PVstcRY~HR 224 (421)
T KOG2779|consen 197 NLE--GIFQAAYTAGVVLPKPVSTCRYWHR 224 (421)
T ss_pred hhh--hhhhHhhhcceeeccccchhhhhhc
Confidence 443 32211 11244555555555544
No 130
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=76.79 E-value=21 Score=28.21 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=45.9
Q ss_pred EeCCEEEEEEEEeeCCCCCCCceeEEEEE-ECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecC
Q 043366 34 CLGNKPIGAILVTPNSGDCNKCRAILGYV-VASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDV 100 (145)
Q Consensus 34 ~~~~~~vG~~~~~~~~~~~~~~~~~i~~~-v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~ 100 (145)
..+|+++||+.+.+..... ...+.++ -+|+.- +|...-|...++.+++++ |++++.+..-+
T Consensus 399 ~~~g~VvaFa~l~~~~~~~---~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~--G~~~fsLgmAp 460 (538)
T COG2898 399 DNEGEVVAFANLMPTGGKE---GYSLDLMRRSPDAP-NGTMDFLFSELILWAKEE--GYQRFSLGMAP 460 (538)
T ss_pred cCCCCeEEEEeecccCCcc---eeEEEeeecCCCCC-chHHHHHHHHHHHHHHHc--CCeEEecCCcc
Confidence 3489999999999876642 1455544 445443 599999999999999888 99998876543
No 131
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=75.57 E-value=15 Score=24.30 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=42.6
Q ss_pred EeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHc
Q 043366 34 CLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKA 112 (145)
Q Consensus 34 ~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~ 112 (145)
+.++..-|.+.+.+.........+.+ -+.|.+..||.|++-.+..++. +.. .++...+..+|+.-.=+++|.
T Consensus 66 y~d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~----~d~---p~L~Wrsr~~n~~~~Wyf~rs 138 (170)
T PF04768_consen 66 YVDEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIR----KDF---PKLFWRSREDNPNNKWYFERS 138 (170)
T ss_dssp EEETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHH----HH----SSEEEEEETT-TTHHHHHHH-
T ss_pred EEeCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHH----Hhc---cceEEEecCCCCcccEEEEee
Confidence 33555556665654221111345777 5889999999999999999986 332 347777888876333333443
No 132
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=74.16 E-value=5.9 Score=23.96 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCcEEEE
Q 043366 103 LASQKVLQKAGFKREG 118 (145)
Q Consensus 103 ~~a~~~~~k~Gf~~~~ 118 (145)
.+|++||+.+||+...
T Consensus 12 ~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 12 EKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHCCCEEcc
Confidence 3899999999998764
No 133
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=73.47 E-value=12 Score=22.51 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=15.3
Q ss_pred HHHHHHHHcCcEEEEEEE
Q 043366 104 ASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 104 ~a~~~~~k~Gf~~~~~~~ 121 (145)
+|++||.++||+......
T Consensus 15 ~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 15 ATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHcCCEEEecCC
Confidence 899999999999876554
No 134
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=73.39 E-value=6.1 Score=31.35 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=47.3
Q ss_pred EECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 62 VVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 62 ~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
+++.+.-.-++.++|+..++.-++.+ |..-..++|.++..+-++||-++||...+.
T Consensus 823 ~~~~~a~D~~~~k~m~~vll~tL~aN--GsrGaf~~V~~dD~~~~~fys~lG~~d~~~ 878 (891)
T KOG3698|consen 823 YFGMDASDAHPMKKMIQVLLVTLAAN--GSRGAFLTVAIDDIERQKFYSELGLTDLGL 878 (891)
T ss_pred ccccccccchHHHHHHHHHHHHHHhc--CCcceeEEechhHHHHHHHHHHhchHHHhH
Confidence 34445556789999999999888676 999999999999999999999999987764
No 135
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.13 E-value=5.1 Score=24.01 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=16.7
Q ss_pred HHHHHHHHcCcEEEEEEEeeE
Q 043366 104 ASQKVLQKAGFKREGVLRKYI 124 (145)
Q Consensus 104 ~a~~~~~k~Gf~~~~~~~~~~ 124 (145)
+|++||+.+||+.......+.
T Consensus 14 ~s~~FY~~LGf~~~~~~~~~~ 34 (113)
T cd08356 14 ESKQFYQALGFELEWENDNLA 34 (113)
T ss_pred HHHHHHHHhCCeeEecCCCEE
Confidence 899999999999887654443
No 136
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=69.67 E-value=14 Score=22.49 Aligned_cols=58 Identities=9% Similarity=0.037 Sum_probs=27.1
Q ss_pred EEE-CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHH---cCcEEEEE
Q 043366 61 YVV-ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQK---AGFKREGV 119 (145)
Q Consensus 61 ~~v-~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k---~Gf~~~~~ 119 (145)
++| .|+.--..--++-+.+++++|-+.+ +++++.+.+..+......+.+. +||+.+..
T Consensus 26 L~V~ip~~~~~~~~K~~lvaLLElAee~L-~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 26 LFVFIPSSALGQGSKESLVALLELAEEKL-GCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp EEEE-SS---SS--SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred EEEEECCcccccccHHHHHHHHHHhcCcC-CCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 444 3433333336777888889997777 9999999887766554444444 67877764
No 137
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=69.59 E-value=13 Score=23.30 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=14.0
Q ss_pred CHHHHHHHH-HcCcEEEEE
Q 043366 102 NLASQKVLQ-KAGFKREGV 119 (145)
Q Consensus 102 N~~a~~~~~-k~Gf~~~~~ 119 (145)
-++|++||+ .+||+...+
T Consensus 13 lerSi~FY~~vLG~~~~~~ 31 (127)
T cd08358 13 RNKTIKFYREVLGMKVLRH 31 (127)
T ss_pred HHHHHHHHHHhcCCEEEee
Confidence 349999995 589997653
No 138
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=68.13 E-value=7.3 Score=23.34 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=16.8
Q ss_pred eEEEEecCCCHHHHHHHHHcCcEEEE
Q 043366 93 RLEATVDVDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 93 ~i~~~~~~~N~~a~~~~~k~Gf~~~~ 118 (145)
.+.+.|.. =.+|++||+++||+...
T Consensus 3 ~i~l~V~D-~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 3 AVGIVVAD-MAKSLDFYRRLGFDFPE 27 (122)
T ss_pred eEEEEecc-HHHHHHHHHHhCceecC
Confidence 34444432 23899999999998753
No 139
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=67.37 E-value=39 Score=23.50 Aligned_cols=67 Identities=9% Similarity=0.167 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEec
Q 043366 71 GIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSLL 139 (145)
Q Consensus 71 G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l~ 139 (145)
|.|-.++..+++...+.+++..++.+.....-..-+.+..+++|....+ ..+.-+|..+..+.-+..
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E--~ileE~~kiYEIlv~e~~ 159 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAE--TILEEDGKIYEILVVEKS 159 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeee--eeecccCeEEEEEEEecC
Confidence 8888899999998888877777888766554446668899999998764 233345776666555544
No 140
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=65.49 E-value=25 Score=25.86 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=48.5
Q ss_pred HHHHHHhhhcCC---CCceEEEEe--CCEEEEEEEEeeCCCCC---CCceeEEE-EEECcCccCCCHHHHHHHHHHHHHh
Q 043366 15 GINFFKNKVINN---HPWFKAICL--GNKPIGAILVTPNSGDC---NKCRAILG-YVVASKYWGKGIATRAVKMVTGIIF 85 (145)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~~~--~~~~vG~~~~~~~~~~~---~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~ 85 (145)
..+|++..+..+ ..++.++.. ...+|||++..+..-.. .....++. ++|+.+.|++.+..-|++++...+-
T Consensus 116 ~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n 195 (451)
T COG5092 116 SVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRAN 195 (451)
T ss_pred HHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhhh
Confidence 345555555543 346666665 45899999866432111 02247776 5799999999999999999998764
Q ss_pred h
Q 043366 86 D 86 (145)
Q Consensus 86 ~ 86 (145)
.
T Consensus 196 ~ 196 (451)
T COG5092 196 V 196 (451)
T ss_pred h
Confidence 3
No 141
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=65.47 E-value=60 Score=24.92 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=58.4
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEE-Cc--CccCCCHHHHHHHHHHHHHhhcCCCcceEEEE--------
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVV-AS--KYWGKGIATRAVKMVTGIIFDEWPHLQRLEAT-------- 97 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v-~~--~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~-------- 97 (145)
..++|..+++.|+.+++....... . ..+.+.- .| +|-++.+-.-.+..+..++++. .+-.+.+.
T Consensus 41 ~~~~v~~~~~~v~aa~ll~k~~~~--~-~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~--~~l~i~idP~l~~~~~ 115 (418)
T COG2348 41 HLIGVKKDGNAVIAASLLSKKLPL--G-FYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSK--RALFIKIDPYLVYQQF 115 (418)
T ss_pred eeEEEEecCceeeeeeeeeeeccC--C-ceEEEecCCCcccccchHHHHHHHHHHHHHHhhc--cceEEEeccchhhhcc
Confidence 446777777776666655443321 0 3333333 45 8888888889999999998764 22222211
Q ss_pred -------ecCCCHHHHHHHHHcCcEEEEEEEee
Q 043366 98 -------VDVDNLASQKVLQKAGFKREGVLRKY 123 (145)
Q Consensus 98 -------~~~~N~~a~~~~~k~Gf~~~~~~~~~ 123 (145)
....|.+.++.+..+|++..|-...+
T Consensus 116 ~~~~~~~~~~~n~~~i~~l~~lG~k~~g~t~~~ 148 (418)
T COG2348 116 DLGGEIIENYNNLAIIKLLKDLGYKHSGFTKGL 148 (418)
T ss_pred cCCCccccCcchHHHHHHHHHhhhhhcCccccc
Confidence 11558899999999999998865543
No 142
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=63.66 E-value=7.3 Score=24.16 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=20.9
Q ss_pred CcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
++.++.+.|.. =..|++||.++||+...+
T Consensus 3 ~i~Hi~i~v~D-l~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVRD-LEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeCC-HHHHHHHHHHcCCEEccc
Confidence 45667666653 347899999999987654
No 143
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=63.43 E-value=2.3 Score=34.38 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=73.6
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeCCE-EEEEEEEeeCCCCCCCceeEEEE-EECcCccCCCHHHHHHHHHHHHHhhcCCC
Q 043366 13 EDGINFFKNKVINNHPWFKAICLGNK-PIGAILVTPNSGDCNKCRAILGY-VVASKYWGKGIATRAVKMVTGIIFDEWPH 90 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~vG~~~~~~~~~~~~~~~~~i~~-~v~~~~rg~G~g~~l~~~~~~~~~~~~~~ 90 (145)
+.-++++.+...+.....++...++. +||-+++.+.+... . .++-+ .|..+.|-+|+|+.++..+.++..... +
T Consensus 404 empkEyi~rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~--f-~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~-~ 479 (720)
T KOG1472|consen 404 EMPKEYISRLVFDTSHHVMARIKDNEGVVGGICFRPFPEKG--F-TEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSS-T 479 (720)
T ss_pred cchHHHHHhhccccccccceeeccccccccccccCcCcccC--C-cceeeccccCcccccccCcCchhhHHHHhhccc-h
Confidence 44577777777776666777666555 99999999888763 2 55544 478999999999999999999986652 2
Q ss_pred cceEEEEecCCCHHHHHHHHHcCcEEEEEEEe
Q 043366 91 LQRLEATVDVDNLASQKVLQKAGFKREGVLRK 122 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~ 122 (145)
+ ..+.+..+| -++..+++.||...-....
T Consensus 480 i--~~~ltyad~-~aigyfkkqgfs~ei~~~~ 508 (720)
T KOG1472|consen 480 I--DYALTYADE-GAIGYFKKQGFSKEIKFEK 508 (720)
T ss_pred H--HHHHHhhhh-cccccccCccchhhccccc
Confidence 2 333455555 5777888888876544443
No 144
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=62.69 E-value=40 Score=21.88 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=38.8
Q ss_pred cCCCHHH-HHHHHHHHHHhhcCCCcceEEEEe-----------cCCCHHHHHHHHHcCcEEEEEEE
Q 043366 68 WGKGIAT-RAVKMVTGIIFDEWPHLQRLEATV-----------DVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 68 rg~G~g~-~l~~~~~~~~~~~~~~~~~i~~~~-----------~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
.+.-++. .+...+.+.+.+. |++.+.+.+ -+..++|++.+.+.|+++.....
T Consensus 68 KsTpyAAq~aa~~~a~k~~~~--Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~D 131 (149)
T PTZ00129 68 ESSPYAAMMAAQDVAARCKEL--GINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIED 131 (149)
T ss_pred CCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 4444554 4455566666665 999999998 67888999999999999876643
No 145
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=60.44 E-value=12 Score=19.03 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=13.5
Q ss_pred CceEEEEeCCEEEEEEEEe
Q 043366 28 PWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~ 46 (145)
....++..+|+++|.+...
T Consensus 31 ~~~~V~d~~~~~~G~is~~ 49 (57)
T PF00571_consen 31 SRLPVVDEDGKLVGIISRS 49 (57)
T ss_dssp SEEEEESTTSBEEEEEEHH
T ss_pred cEEEEEecCCEEEEEEEHH
Confidence 3455555799999998754
No 146
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=60.14 E-value=26 Score=20.69 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=19.6
Q ss_pred cceEEEEecCCCHHHHHHHHHcCcEEEEEE
Q 043366 91 LQRLEATVDVDNLASQKVLQKAGFKREGVL 120 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~ 120 (145)
+.++.+.|.. =.+|.+||..+||+.....
T Consensus 4 l~hv~l~v~D-l~~s~~FY~~lGl~~~~~~ 32 (113)
T cd07267 4 IAHVRFEHPD-LDKAERFLTDFGLEVAART 32 (113)
T ss_pred EEEEEEccCC-HHHHHHHHHHcCCEEEEec
Confidence 4455555542 2378999999999876543
No 147
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=59.54 E-value=14 Score=25.33 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEE
Q 043366 70 KGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 70 ~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~ 118 (145)
+|+|.+.+..++-||+++- +.+-..-+.+++.|+|+....
T Consensus 121 KGIG~ETaDsILlYa~~rp---------~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDRP---------VFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcCc---------ccchhHHHHHHHHHhcccccc
Confidence 5999999999999997762 222245789999999998764
No 148
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=50.41 E-value=37 Score=19.98 Aligned_cols=30 Identities=3% Similarity=0.208 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeCCEEEEEE
Q 043366 13 EDGINFFKNKVINNHPWFKAICLGNKPIGAI 43 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~ 43 (145)
+..++|.++...+ ..++=++..+|++||=.
T Consensus 52 ~~~~~~a~~I~ed-e~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 52 DHDQQFAERILED-ELFYPLVVINDEIVAEG 81 (93)
T ss_dssp HHHHHHHHHHHTT-SS-SSEEEETTEEEEES
T ss_pred HHHHHHHHHHHhc-ccccceEEECCEEEecC
Confidence 4567777777765 44444667799999854
No 149
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=50.25 E-value=39 Score=20.81 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=19.7
Q ss_pred eEEEEecCCCHHHHHHHHH-cCcEEEEEEE
Q 043366 93 RLEATVDVDNLASQKVLQK-AGFKREGVLR 121 (145)
Q Consensus 93 ~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~ 121 (145)
++.+.|. +=.+|++||++ +||+......
T Consensus 3 Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 3 HVEFYVG-NAKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCeEEEecC
Confidence 4555552 33488999999 9999877543
No 150
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=50.15 E-value=33 Score=20.17 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=20.0
Q ss_pred CcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
++.++.+.|.- =.+|.+||..+||+....
T Consensus 2 ~i~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 34556665532 248999999999998654
No 151
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=49.65 E-value=78 Score=21.27 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=43.0
Q ss_pred EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH---HHHHHcCcEEEEEE
Q 043366 61 YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ---KVLQKAGFKREGVL 120 (145)
Q Consensus 61 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~---~~~~k~Gf~~~~~~ 120 (145)
++.-|+..--+..++=+.+++++|.+++ .+.++.+.....|..-- +-+.=+||+.+...
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl-~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~ 166 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKL-HVDKVFICFDKNREDRAALLRTFSYVGFEPVRPD 166 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhh-ccceEEEEEecCccChHhhhhhehcceeeecCCC
Confidence 3445776667788899999999999998 99999997776654333 33334788887643
No 152
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=49.11 E-value=32 Score=19.78 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=17.6
Q ss_pred HHHHHHHHH-cCcEEEEEEEeeEE
Q 043366 103 LASQKVLQK-AGFKREGVLRKYIT 125 (145)
Q Consensus 103 ~~a~~~~~k-~Gf~~~~~~~~~~~ 125 (145)
..|.+||++ +||+..........
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~~~~~ 30 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDPDYVD 30 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEETSEEE
T ss_pred HHHHHHHHHhcCCEEEEeCCCeEE
Confidence 378999998 99999885554443
No 153
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=48.78 E-value=32 Score=25.83 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=35.0
Q ss_pred ECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEE
Q 043366 63 VASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 63 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
..++.|.-|+|.++++. + |++++.+-+ |+.-..-.+..|-+++++.+
T Consensus 317 ~~~d~R~y~igaqIL~~--------L-gv~~irLlT---np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 317 RPVDYRTYGIGAQILRD--------L-GVGKMRLLS---SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred CCcccceehHHHHHHHH--------c-CCCeEEECC---CcHHHHhhhhCCcEEEEEec
Confidence 36678999999888753 3 889999866 55566667888988886543
No 154
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=48.70 E-value=80 Score=21.15 Aligned_cols=99 Identities=10% Similarity=0.120 Sum_probs=64.5
Q ss_pred hhHHHHHHhhhcC--------CCCceEEE-EeCCEEEEEEEEeeCCCCC------------------------CCceeEE
Q 043366 13 EDGINFFKNKVIN--------NHPWFKAI-CLGNKPIGAILVTPNSGDC------------------------NKCRAIL 59 (145)
Q Consensus 13 ~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~vG~~~~~~~~~~~------------------------~~~~~~i 59 (145)
.+.++||++.... .....+++ ..+|++++.+++..-.... -....|+
T Consensus 11 ~~~e~fI~~~y~~~~~A~i~~f~P~ll~l~~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEv 90 (179)
T PF12261_consen 11 AEVEQFIRQRYAQAYGATIRHFMPQLLALRDSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEV 90 (179)
T ss_pred HHHHHHHHHHHHHHhCCcCCccchHHhhhccCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEe
Confidence 5566666655442 11233455 4599999999988544221 0122555
Q ss_pred EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 60 GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 60 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
|-.- -.+.|.+..++..+..++... |++.+.++. +..-++++.|+|......
T Consensus 91 GnLA---s~~~g~~~~l~~~l~~~L~~~--g~~w~vfTa---T~~lr~~~~rlgl~~~~L 142 (179)
T PF12261_consen 91 GNLA---SFSPGAARLLFAALAQLLAQQ--GFEWVVFTA---TRQLRNLFRRLGLPPTVL 142 (179)
T ss_pred echh---hcCcccHHHHHHHHHHHHHHC--CCCEEEEeC---CHHHHHHHHHcCCCceec
Confidence 4221 124688999999999998776 888887765 568899999999876543
No 155
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=48.66 E-value=29 Score=15.97 Aligned_cols=19 Identities=5% Similarity=0.083 Sum_probs=12.7
Q ss_pred CceEEEEeCCEEEEEEEEe
Q 043366 28 PWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~ 46 (145)
...+++..+++++|.+...
T Consensus 24 ~~~~v~~~~~~~~g~i~~~ 42 (49)
T smart00116 24 RRLPVVDEEGRLVGIVTRR 42 (49)
T ss_pred CcccEECCCCeEEEEEEHH
Confidence 3445555568999988753
No 156
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=47.36 E-value=63 Score=21.25 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=24.9
Q ss_pred CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEE
Q 043366 64 ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 64 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
.+++|--|+|.++++ .+ |++++.+-+ .|+.-....+..|-++++..+
T Consensus 122 ~~d~R~ygigaqIL~--------dL-GV~~~rLLt--nnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 122 PEDLRDYGIGAQILR--------DL-GVKKMRLLT--NNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp -S----THHHHHHHH--------HT-T--SEEEE---S-HHHHHHHHHTT--EEEEE-
T ss_pred ccccccHHHHHHHHH--------Hc-CCCEEEECC--CChhHHHHHhcCCCEEEEEec
Confidence 355666666666554 34 888887655 367888888999988887643
No 157
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=45.92 E-value=75 Score=23.71 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=26.7
Q ss_pred HHHHHhhcCCCcc-eEEEEecCCCHHHHHHHHHcCcEEEE
Q 043366 80 VTGIIFDEWPHLQ-RLEATVDVDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 80 ~~~~~~~~~~~~~-~i~~~~~~~N~~a~~~~~k~Gf~~~~ 118 (145)
++.++++..|++. ++...+...|....+||.++|.+.+-
T Consensus 103 ~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvV 142 (347)
T COG0826 103 LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVV 142 (347)
T ss_pred HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEE
Confidence 3445555544444 34556778899999999999977653
No 158
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=45.72 E-value=1.8e+02 Score=24.24 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=18.4
Q ss_pred eEEEEeCCEEEEEEEEeeCCCCC
Q 043366 30 FKAICLGNKPIGAILVTPNSGDC 52 (145)
Q Consensus 30 ~~~~~~~~~~vG~~~~~~~~~~~ 52 (145)
...+..||+++|.+.+......+
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~ 541 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPD 541 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChh
Confidence 45555699999999999887765
No 159
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=44.97 E-value=19 Score=22.61 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCcEEEEEEE
Q 043366 103 LASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 103 ~~a~~~~~k~Gf~~~~~~~ 121 (145)
.+|.+||.++||+.-....
T Consensus 15 ~~S~~Fy~alGfk~Npq~s 33 (133)
T COG3607 15 EASKAFYTALGFKFNPQFS 33 (133)
T ss_pred HHHHHHHHHhCcccCCCcc
Confidence 3789999999999765533
No 160
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=44.53 E-value=13 Score=27.41 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=14.3
Q ss_pred eCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCH
Q 043366 35 LGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGI 72 (145)
Q Consensus 35 ~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~ 72 (145)
++||+||-..+.+..... . ...|-.+...||+||+
T Consensus 322 ehGQ~vgrLvyE~m~~~P--~-~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 322 EHGQIVGRLVYERMAERP--E-RLYGAGIGSNYQGQGL 356 (364)
T ss_dssp ETT-EEEEEEEEEBSS-------TTSS-----------
T ss_pred eCCcEEEEEEehhhccCc--c-ccccccccccchhhhh
Confidence 499999999999876653 0 1114557889999986
No 161
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=43.67 E-value=56 Score=19.21 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=19.2
Q ss_pred cceEEEEecCCCHHHHHHHHH-cCcEEEEEE
Q 043366 91 LQRLEATVDVDNLASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~ 120 (145)
+.++.+.|.. =..|.+||++ +||+.....
T Consensus 2 i~hv~l~v~d-~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 2 LHHVTLITRD-AQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cccEEEEcCC-hhHhHHHHHHccCCEEeeeE
Confidence 4455555532 2378999986 899887654
No 162
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=43.59 E-value=37 Score=23.91 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcE
Q 043366 70 KGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115 (145)
Q Consensus 70 ~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~ 115 (145)
-|.|+-.+.+.+.++..+. |-+-+.++.++.| +.+++-.+.+.
T Consensus 11 GGvG~TTltAnLA~aL~~~-G~~VlaID~dpqN--~Lrlhfg~~~~ 53 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARL-GESVLAIDLDPQN--LLRLHFGLPLD 53 (243)
T ss_pred CCCCHHHHHHHHHHHHHHC-CCcEEEEeCCcHH--HHHHhcCCCCc
Confidence 4999999999999999988 8888888888887 55555555443
No 163
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=43.42 E-value=31 Score=20.19 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=12.7
Q ss_pred HHHHHHHH-cCcEEEE
Q 043366 104 ASQKVLQK-AGFKREG 118 (145)
Q Consensus 104 ~a~~~~~k-~Gf~~~~ 118 (145)
.|.+||++ +||+...
T Consensus 13 ~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 13 AAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHhcCceEEE
Confidence 78999997 9999764
No 164
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=41.33 E-value=72 Score=18.51 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=20.8
Q ss_pred cceEEEEecCCCHHHHHHHHH-cCcEEEEEEEe
Q 043366 91 LQRLEATVDVDNLASQKVLQK-AGFKREGVLRK 122 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~~ 122 (145)
+.++.+.+. +=.++++||++ +||+.......
T Consensus 3 l~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~~~ 34 (117)
T cd07240 3 IAYAELEVP-DLERALEFYTDVLGLTVLDRDAG 34 (117)
T ss_pred eeEEEEecC-CHHHHHHHHHhccCcEEEeecCC
Confidence 445555443 23488999999 99998866533
No 165
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=41.14 E-value=39 Score=24.53 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=38.1
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHH
Q 043366 13 EDGINFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRA 76 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l 76 (145)
++..+++..... .-+-.++..+|+|+++.-+...+... +-..+. .-.++|++..--.|+-|
T Consensus 190 ~~l~e~f~~Lr~--l~fG~VLfl~~~PcA~qlv~k~eSp~-wi~~D~iNgG~Dpe~~~~spGSIL 251 (298)
T PRK15312 190 DNLANFFSQLRH--LLFGHILYIEGIPCAFDIVLKSESQM-NVYFDVPNGAVKNECMPLSPGSIL 251 (298)
T ss_pred HHHHHHHHHhHH--hheeeEEEECCcceEEEEEEEecCCC-cEEEecccCccCcccccCCCccEE
Confidence 444555554333 23334666799999999999887653 212222 44689998877777644
No 166
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=40.95 E-value=1.4e+02 Score=21.82 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=17.6
Q ss_pred EecCCCHHHHHHHHHcCcEEEEE
Q 043366 97 TVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 97 ~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
.+.++-.++..+.++-||+..+.
T Consensus 227 qVHp~t~~A~a~Le~EGF~~~gY 249 (336)
T COG3138 227 QVHPDTAPARAVLEKEGFRYRGY 249 (336)
T ss_pred CcCCCchHHHHHHHHhCccccCe
Confidence 45556778889999999987764
No 167
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=40.22 E-value=45 Score=19.55 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=22.0
Q ss_pred cceEEEEecCCCHHHHHHHHH-cCcEEEEEEE
Q 043366 91 LQRLEATVDVDNLASQKVLQK-AGFKREGVLR 121 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~ 121 (145)
+.++.+.|..- ..+.+||.+ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 45666655443 378999998 9999988766
No 168
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=39.22 E-value=51 Score=20.91 Aligned_cols=26 Identities=12% Similarity=-0.100 Sum_probs=19.3
Q ss_pred CCCceEEEEeCCEEEEEEEEeeCCCC
Q 043366 26 NHPWFKAICLGNKPIGAILVTPNSGD 51 (145)
Q Consensus 26 ~~~~~~~~~~~~~~vG~~~~~~~~~~ 51 (145)
+++.++++..||++|-++-=+..+..
T Consensus 94 PSSPS~ALfKdGelvh~ieRh~IEGr 119 (136)
T PF06491_consen 94 PSSPSIALFKDGELVHFIERHHIEGR 119 (136)
T ss_dssp --SSEEEEEETTEEEEEE-GGGTTTS
T ss_pred CCCchheeeeCCEEEEEeehhhcCCC
Confidence 56889999999999999877766654
No 169
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=38.89 E-value=1.7e+02 Score=22.12 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=55.3
Q ss_pred HHHHHhhhcC-C-CCceEEEEeCCEEEEEEEEeeCCCCCCCceeEEE--EEECcCccCCCHHHH-HHHHHHHHHhhcCCC
Q 043366 16 INFFKNKVIN-N-HPWFKAICLGNKPIGAILVTPNSGDCNKCRAILG--YVVASKYWGKGIATR-AVKMVTGIIFDEWPH 90 (145)
Q Consensus 16 ~~~~~~~~~~-~-~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~--~~v~~~~rg~G~g~~-l~~~~~~~~~~~~~~ 90 (145)
++|++..... + ....++...+|++||+..+...... ..| +....+.. ++=-+ +--+.++||-++ |
T Consensus 237 ~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~~~~------LyGRYwG~~~~~~--~LHFe~cYYq~Ie~aI~~--G 306 (370)
T PF04339_consen 237 REFFEQLAETMPEQVVLVVARRDGQPVAFALCLRGDDT------LYGRYWGCDEEIP--FLHFELCYYQGIEYAIEH--G 306 (370)
T ss_pred HHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEeCCE------EEEeeeccccccc--CcchHHHHHHHHHHHHHc--C
Confidence 3444444332 1 3345566679999999988877543 222 22333333 33333 355889999888 9
Q ss_pred cceEEEEecCCCHHHHHHHHHcCcEEEEEEEee
Q 043366 91 LQRLEATVDVDNLASQKVLQKAGFKREGVLRKY 123 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~ 123 (145)
++.+.....-+.+ ...||+.+.+..-+
T Consensus 307 l~~f~~GaqGEHK------~~RGf~P~~t~S~H 333 (370)
T PF04339_consen 307 LRRFEPGAQGEHK------IARGFEPVPTYSAH 333 (370)
T ss_pred CCEEECCcchhHH------HHcCCccccceeee
Confidence 9998877654333 24689888765543
No 170
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=38.50 E-value=96 Score=19.13 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=37.3
Q ss_pred cCCCHHH-HHHHHHHHHHhhcCCCcceEEEEec-----------CCCHHHHHHHHHcCcEEEEEEE
Q 043366 68 WGKGIAT-RAVKMVTGIIFDEWPHLQRLEATVD-----------VDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 68 rg~G~g~-~l~~~~~~~~~~~~~~~~~i~~~~~-----------~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
++.-++. .+.+.+.+.+.+. |++.+.+.+. +..+.+++-.++.|+++.....
T Consensus 42 k~TpyAAq~aa~~~~~~~~~~--Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~D 105 (114)
T TIGR03628 42 ESSPYAAMQAAGRAAEKAKER--GITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIED 105 (114)
T ss_pred cCCHHHHHHHHHHHHHHHHHc--CCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 4445554 4555666667665 9999988874 4668999999999999876543
No 171
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=38.13 E-value=98 Score=20.78 Aligned_cols=45 Identities=9% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhcCCCcceEEEEecCCC--HHHHHHHHHcCcEEEEE
Q 043366 73 ATRAVKMVTGIIFDEWPHLQRLEATVDVDN--LASQKVLQKAGFKREGV 119 (145)
Q Consensus 73 g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N--~~a~~~~~k~Gf~~~~~ 119 (145)
-.++++++++..++. |...+.+.-.+.. ......++..||.....
T Consensus 21 ~P~vv~avv~~l~~~--g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 21 HPEVVRAVVEMLKEA--GAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CHHHHHHHHHHHHHc--CCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 358899999999777 7776666555443 47889999999987644
No 172
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=37.96 E-value=89 Score=21.38 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHhhcCCCcc-eEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 81 TGIIFDEWPHLQ-RLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 81 ~~~~~~~~~~~~-~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
+.++++..|++. .+...+...|..+.++|+..|+..+-.
T Consensus 27 ~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~l 66 (233)
T PF01136_consen 27 LELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITL 66 (233)
T ss_pred HHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEE
Confidence 444445433333 223346667889999999998876644
No 173
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=37.64 E-value=2.4e+02 Score=23.48 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=40.6
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKV 108 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 108 (145)
....+-.+++++|++.+....... +.++++.+++. |++ +.+-+......+.++
T Consensus 549 ~~v~va~~~~~~g~i~l~d~~r~~------------------------a~~~i~~L~~~--gi~-~~llTGd~~~~a~~i 601 (741)
T PRK11033 549 TVVLVLRNDDVLGLIALQDTLRAD------------------------ARQAISELKAL--GIK-GVMLTGDNPRAAAAI 601 (741)
T ss_pred EEEEEEECCEEEEEEEEecCCchh------------------------HHHHHHHHHHC--CCE-EEEEcCCCHHHHHHH
Confidence 344455589999999998776654 45555555555 765 444455555678888
Q ss_pred HHHcCcE
Q 043366 109 LQKAGFK 115 (145)
Q Consensus 109 ~~k~Gf~ 115 (145)
.+++|..
T Consensus 602 a~~lgi~ 608 (741)
T PRK11033 602 AGELGID 608 (741)
T ss_pred HHHcCCC
Confidence 8888874
No 174
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=37.61 E-value=51 Score=23.57 Aligned_cols=72 Identities=10% Similarity=-0.087 Sum_probs=44.2
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEEECcCccCCCHHHHHH----HHHHHHHhhc
Q 043366 13 EDGINFFKNKVINNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYVVASKYWGKGIATRAV----KMVTGIIFDE 87 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~----~~~~~~~~~~ 87 (145)
+...+++...-. --+-.++..+|+||++.-+...+... +-..+. .-.++|+++.--.|+-|+ +.+.+++.+.
T Consensus 160 ~~l~e~f~~Lr~--~~fG~vL~l~~~P~Aiqlv~k~es~~-wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~ 236 (264)
T PF07395_consen 160 EHLAEFFSELRH--MIFGSVLFLNGQPCAIQLVYKVESPK-WVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQ 236 (264)
T ss_pred HHHHHHHHHhHH--hheeeEEEECCcceEEEEEEEecCCC-eEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHh
Confidence 444555554333 22334666799999999999887763 211222 345799999888887553 4555555444
No 175
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=37.60 E-value=1.1e+02 Score=19.47 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=36.9
Q ss_pred cCCCHHH-HHHHHHHHHHhhcCCCcceEEEEecC-----------CCHHHHHHHHHcCcEEEEEEE
Q 043366 68 WGKGIAT-RAVKMVTGIIFDEWPHLQRLEATVDV-----------DNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 68 rg~G~g~-~l~~~~~~~~~~~~~~~~~i~~~~~~-----------~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
...-++. .+...+.+.+.+. |++.+.+.+.- ..+.|++.+++.|+++....+
T Consensus 49 K~TpyAAq~aae~~~~~~~~~--Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~D 112 (132)
T PRK09607 49 ESSPYAAMQAAEKAAEDAKEK--GITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIED 112 (132)
T ss_pred cCCHHHHHHHHHHHHHHHHHc--CCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 3444554 4555566666654 99999888744 567899999999999876643
No 176
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.43 E-value=60 Score=22.52 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=24.1
Q ss_pred CcceEEEE---ecCCCHHHHHHHHHcCcEEEEE
Q 043366 90 HLQRLEAT---VDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~---~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
+++++.+- +.+-|.+...|+++.||+.+..
T Consensus 117 ~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 117 GAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred CcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 67777664 4567999999999999998764
No 177
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.14 E-value=98 Score=18.82 Aligned_cols=78 Identities=10% Similarity=-0.027 Sum_probs=45.3
Q ss_pred ceEEEEe-CCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHH
Q 043366 29 WFKAICL-GNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQK 107 (145)
Q Consensus 29 ~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 107 (145)
-.+.+.. .+++-|.-++....+. ....++.+...|.-+ +..+++.+.+. |++.+.+.....+....+
T Consensus 29 ~v~~Vnp~~~~i~G~~~y~sl~e~--p~~iDlavv~~~~~~--------~~~~v~~~~~~--g~~~v~~~~g~~~~~~~~ 96 (116)
T PF13380_consen 29 EVYPVNPKGGEILGIKCYPSLAEI--PEPIDLAVVCVPPDK--------VPEIVDEAAAL--GVKAVWLQPGAESEELIE 96 (116)
T ss_dssp EEEEESTTCSEETTEE-BSSGGGC--SST-SEEEE-S-HHH--------HHHHHHHHHHH--T-SEEEE-TTS--HHHHH
T ss_pred EEEEECCCceEECcEEeeccccCC--CCCCCEEEEEcCHHH--------HHHHHHHHHHc--CCCEEEEEcchHHHHHHH
Confidence 4555555 5556676666655432 122666555555322 44555555455 899999999999999999
Q ss_pred HHHHcCcEEEE
Q 043366 108 VLQKAGFKREG 118 (145)
Q Consensus 108 ~~~k~Gf~~~~ 118 (145)
..++.|.+..+
T Consensus 97 ~a~~~gi~vig 107 (116)
T PF13380_consen 97 AAREAGIRVIG 107 (116)
T ss_dssp HHHHTT-EEEE
T ss_pred HHHHcCCEEEe
Confidence 99999999876
No 178
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=37.13 E-value=1.2e+02 Score=21.53 Aligned_cols=50 Identities=22% Similarity=0.106 Sum_probs=31.0
Q ss_pred EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceE-EEEecCCCHHHHHHHHH
Q 043366 60 GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRL-EATVDVDNLASQKVLQK 111 (145)
Q Consensus 60 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i-~~~~~~~N~~a~~~~~k 111 (145)
-++|.+..|++|+++.|+..+.......- -+.+. .+..+|.+ ....|..+
T Consensus 188 RIWV~s~~Rr~gIAs~lldva~~~~~~g~-~isr~~iAfs~PTd-dGk~lAt~ 238 (257)
T KOG3014|consen 188 RIWVSSLRRRKGIASLLLDVARCNFVYGE-VISREEIAFSDPTD-DGKKLATK 238 (257)
T ss_pred EEEeehhhhhhhhHHHHHHHHHHhhhhhc-ccchhheEecCCCc-hhHHHHHH
Confidence 37899999999999999988876542221 33333 23355554 34444443
No 179
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=36.96 E-value=1.2e+02 Score=20.69 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=37.0
Q ss_pred EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEe
Q 043366 60 GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRK 122 (145)
Q Consensus 60 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~ 122 (145)
.+..-++.|..|+|.++++. + |++++.+-+. |+.-+.-.+..|-.++.+.+.
T Consensus 119 ~lg~~~D~R~ygigAqIL~d--------L-GI~~irLLtn--np~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 119 ALGFPADERDYGIGAQILKD--------L-GIKKIRLLTN--NPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred hhcCCchHHHHHHHHHHHHH--------c-CCcEEEEecC--ChHHHHHHHhCCceEEEEeec
Confidence 34556788888888877643 3 8999988665 776777778888667665543
No 180
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=36.50 E-value=90 Score=18.24 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=23.5
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEEEEeeEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGVLRKYIT 125 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~~~~~ 125 (145)
++..+.+.+. +=..+.+||.+ +||+.......+..
T Consensus 3 ~i~hv~l~v~-d~~~s~~FY~~~lG~~~~~~~~~~~~ 38 (120)
T cd08362 3 ALRGVGLGVP-DLAAAAAFYREVWGLSVVAEDDGIVY 38 (120)
T ss_pred eeeEEEEecC-CHHHHHHHHHhCcCcEEEEecCCEEE
Confidence 5566766664 23489999998 99998755444433
No 181
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=36.19 E-value=96 Score=20.34 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCcceEEEEe--cCCCH--HHHHHHHHcCcEEEEEEEe
Q 043366 77 VKMVTGIIFDEWPHLQRLEATV--DVDNL--ASQKVLQKAGFKREGVLRK 122 (145)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~--~~~N~--~a~~~~~k~Gf~~~~~~~~ 122 (145)
+.+++++|++. |.+++-+.. ...++ .-.++++..||+..+..-+
T Consensus 43 veEiieFak~m--gykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~CK 90 (157)
T PF08901_consen 43 VEEIIEFAKRM--GYKKIGIAFCIGLRKEARILAKILEANGFEVYSVCCK 90 (157)
T ss_pred HHHHHHHHHHc--CCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 67888999776 999987653 22333 3346788999999887554
No 182
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=35.74 E-value=74 Score=18.05 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=13.6
Q ss_pred ceEEEEeCCEEEEEEEEeeC
Q 043366 29 WFKAICLGNKPIGAILVTPN 48 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~ 48 (145)
..+++..+|+++|.+.....
T Consensus 26 ~~~v~d~~g~~~Giv~~~dl 45 (106)
T cd04582 26 ALTVVDADGQPLGFVTRREA 45 (106)
T ss_pred EEEEECCCCCEEEEEeHHHH
Confidence 44445457999999986543
No 183
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.25 E-value=93 Score=21.93 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEE
Q 043366 69 GKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKR 116 (145)
Q Consensus 69 g~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~ 116 (145)
.-|.|+..+...+..+.... +.+-+.+++++.|....+ |..++-+.
T Consensus 11 KGGvGKSt~a~~la~~l~~~-g~~vl~iD~D~~n~~~~~-~~~l~~~~ 56 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASK-GQKPLCIDTDPVNATFEG-YKALNVRR 56 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhC-CCCEEEEECCCCCchhhh-HHhcCCcc
Confidence 34889888777777666655 888889999999964443 44555443
No 184
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=35.25 E-value=49 Score=21.30 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=19.6
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKRE 117 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~ 117 (145)
++.++.+.|.. =.+|+.||++ +||+..
T Consensus 4 ~i~Hv~i~V~D-le~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISVPD-LDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEE
Confidence 56677776643 2489999977 899875
No 185
>PRK10291 glyoxalase I; Provisional
Probab=34.88 E-value=55 Score=19.79 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=14.1
Q ss_pred HHHHHHHHH-cCcEEEEEE
Q 043366 103 LASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 103 ~~a~~~~~k-~Gf~~~~~~ 120 (145)
.+|+.||++ +||+.....
T Consensus 8 e~s~~FY~~~LG~~~~~~~ 26 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRTS 26 (129)
T ss_pred HHHHHHHHhccCCEEEEee
Confidence 489999966 999886543
No 186
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.86 E-value=68 Score=18.73 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=22.4
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGVLR 121 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~ 121 (145)
++.++.+.|. +=.++.+||++ +||+......
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~~ 34 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFGE 34 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeecccc
Confidence 5667777663 33489999998 8999876543
No 187
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=34.30 E-value=2.7e+02 Score=23.06 Aligned_cols=25 Identities=12% Similarity=0.027 Sum_probs=18.3
Q ss_pred CceEEEEeCCEEEEEEEEeeCCCCC
Q 043366 28 PWFKAICLGNKPIGAILVTPNSGDC 52 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~~~~~~ 52 (145)
...+++..+++++|.+.+.......
T Consensus 425 ~~~l~va~~~~~lG~i~l~D~~R~~ 449 (679)
T PRK01122 425 GTPLVVAEDNRVLGVIYLKDIVKPG 449 (679)
T ss_pred CcEEEEEECCeEEEEEEEeccCchh
Confidence 3445555688999999998777654
No 188
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=34.00 E-value=94 Score=17.77 Aligned_cols=31 Identities=3% Similarity=-0.060 Sum_probs=17.5
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-++.....+.....++..+|+++|.+...
T Consensus 76 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 106 (111)
T cd04590 76 DDLLEEMRKERSHMAIVVDEYGGTAGLVTLE 106 (111)
T ss_pred HHHHHHHHhcCCcEEEEEECCCCEEEEeEHH
Confidence 3333433333233444555579999998754
No 189
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=33.85 E-value=69 Score=18.42 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEE
Q 043366 74 TRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~ 119 (145)
.+||..+-+.-...+ |-+.-.-.++..-.....-.++.||+.++-
T Consensus 25 P~LM~~LgA~~~~~l-gn~f~ey~~~~~Pr~VLnKLE~~G~kVvsm 69 (83)
T PF06399_consen 25 PELMAYLGAKKRTPL-GNNFKEYHVDDPPRVVLNKLEKMGYKVVSM 69 (83)
T ss_dssp HHHHHHHT-EEE--T-T-SS-EEEESS-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHhcCceeccc-cCcceEEEcCCChHHHHHHHHhcCeEEEEE
Confidence 467777766544445 656666667666667778899999999874
No 190
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=33.71 E-value=83 Score=18.49 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=18.1
Q ss_pred hHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 14 DGINFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
...+-++.....+.....++..+|+++|.++..
T Consensus 83 ~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~ 115 (120)
T cd04641 83 CLRTIFDLIVKARVHRLVVVDENKRVEGIISLS 115 (120)
T ss_pred cHHHHHHHHHhcCccEEEEECCCCCEEEEEEHH
Confidence 334444444444233444554468999998754
No 191
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=33.62 E-value=18 Score=23.09 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=23.5
Q ss_pred CcceEEEEecCCCHHHHHHHHHcCcEEEEEEEe
Q 043366 90 HLQRLEATVDVDNLASQKVLQKAGFKREGVLRK 122 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~ 122 (145)
|+..++..+... .....+++++||+.++..+.
T Consensus 9 G~dFvEFa~~~~-~~l~~~~~~lGF~~~a~hrs 40 (139)
T PF14696_consen 9 GFDFVEFAVPDA-QALAQLFTALGFQPVARHRS 40 (139)
T ss_dssp EEEEEEEE-SST-TSCHHHHCCCCEEEECCECC
T ss_pred CeEEEEEecCCH-HHHHHHHHHhCcceEEecCC
Confidence 667788877664 45667889999999987543
No 192
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=33.42 E-value=1.5e+02 Score=20.00 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=32.9
Q ss_pred CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEE
Q 043366 64 ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVL 120 (145)
Q Consensus 64 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~ 120 (145)
.+++|.-|+|.++++. + |++++.+-+. |..-..-....|.++++..
T Consensus 124 ~~d~R~yGiGAQIL~d--------L-GV~~mrLLtn--~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 124 AADERDYTLAADMLKA--------L-GVKKVRLLTN--NPKKVEALTEAGINIVERV 169 (197)
T ss_pred CccceehhHHHHHHHH--------c-CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 4568999999887753 3 8898876554 5545566678888887655
No 193
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=33.38 E-value=2.8e+02 Score=22.95 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=35.6
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKV 108 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 108 (145)
..+++..+++++|.+.+....... +++.++.+++. |++.+ +-+...-..+.++
T Consensus 422 ~~l~v~~~~~~lG~i~l~Dp~R~~------------------------a~e~I~~Lr~~--GI~vv-MiTGDn~~TA~aI 474 (673)
T PRK14010 422 TPLVVLEDNEILGVIYLKDVIKDG------------------------LVERFRELREM--GIETV-MCTGDNELTAATI 474 (673)
T ss_pred eEEEEEECCEEEEEEEeecCCcHH------------------------HHHHHHHHHHC--CCeEE-EECCCCHHHHHHH
Confidence 334445688999999999877764 44555555444 66533 3233333356666
Q ss_pred HHHcCc
Q 043366 109 LQKAGF 114 (145)
Q Consensus 109 ~~k~Gf 114 (145)
.+.+|.
T Consensus 475 A~elGI 480 (673)
T PRK14010 475 AKEAGV 480 (673)
T ss_pred HHHcCC
Confidence 666665
No 194
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=33.10 E-value=86 Score=18.23 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=18.0
Q ss_pred hHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 14 DGINFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
...+-++.....+.....++..+|+++|++...
T Consensus 77 ~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~ 109 (114)
T cd04619 77 LLHDVWQVMKQRGLKNIPVVDENARPLGVLNAR 109 (114)
T ss_pred CHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhH
Confidence 334444444443223344444578999998764
No 195
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=32.72 E-value=2.9e+02 Score=22.90 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=35.9
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCCCceeEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCNKCRAILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKV 108 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 108 (145)
..+++..+++++|.+.+....... +.+.++.+++. |++. .+-+......+.++
T Consensus 427 r~l~va~~~~~lG~i~l~D~~Rp~------------------------a~eaI~~l~~~--Gi~v-~miTGD~~~ta~~i 479 (675)
T TIGR01497 427 TPLVVCEDNRIYGVIYLKDIVKGG------------------------IKERFAQLRKM--GIKT-IMITGDNRLTAAAI 479 (675)
T ss_pred eEEEEEECCEEEEEEEecccchhH------------------------HHHHHHHHHHC--CCEE-EEEcCCCHHHHHHH
Confidence 344555678999999988776654 44555555454 6553 33344444466666
Q ss_pred HHHcCc
Q 043366 109 LQKAGF 114 (145)
Q Consensus 109 ~~k~Gf 114 (145)
.+++|.
T Consensus 480 A~~lGI 485 (675)
T TIGR01497 480 AAEAGV 485 (675)
T ss_pred HHHcCC
Confidence 777775
No 196
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=32.70 E-value=1.6e+02 Score=19.85 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=32.3
Q ss_pred CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEE
Q 043366 64 ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVL 120 (145)
Q Consensus 64 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~ 120 (145)
.+++|.-|+|.++++. + |++++.+-+. |..-.......|-++++..
T Consensus 121 ~~d~R~yGiGAQIL~d--------L-GV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 121 PADERDFSLCADILED--------L-GVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred cccceehhHHHHHHHH--------c-CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 3458888999888754 3 8888876554 5555666677787777654
No 197
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=32.57 E-value=83 Score=18.58 Aligned_cols=34 Identities=12% Similarity=-0.044 Sum_probs=22.7
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEEEEeeE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGVLRKYI 124 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~~~~ 124 (145)
.+.++.+.|..- .++.+||.. +||+.........
T Consensus 2 ~i~hi~l~v~d~-~~~~~Fy~~~lG~~~~~~~~~~~ 36 (125)
T cd07255 2 RIGAVTLRVADL-ERSLAFYQDVLGLEVLERTDSTA 36 (125)
T ss_pred EEEEEEEEECCH-HHHHHHHHhccCcEEEEcCCCEE
Confidence 355676666433 378899986 8999887643333
No 198
>PLN02300 lactoylglutathione lyase
Probab=32.46 E-value=62 Score=23.05 Aligned_cols=42 Identities=10% Similarity=-0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHH-cCcEEEEE
Q 043366 77 VKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQK-AGFKREGV 119 (145)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~ 119 (145)
...+++|-+....++.++.+.|.. =.+|++||++ +||+....
T Consensus 11 ~~~~~~~~~~~i~~l~Hv~l~V~D-le~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 11 AEDLLEWPKKDKRRMLHVVYRVGD-LDRTIKFYTECLGMKLLRK 53 (286)
T ss_pred hhhhhcCCccccceEEEEEEEeCC-HHHHHHHHHHhcCCEEEEe
Confidence 345667753332255566665543 2389999976 89988754
No 199
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=32.22 E-value=1.2e+02 Score=18.47 Aligned_cols=63 Identities=24% Similarity=0.194 Sum_probs=39.9
Q ss_pred eCCEEEEEEEEeeCCCCC--CCceeEE-EEEECcCccC-CCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCH
Q 043366 35 LGNKPIGAILVTPNSGDC--NKCRAIL-GYVVASKYWG-KGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNL 103 (145)
Q Consensus 35 ~~~~~vG~~~~~~~~~~~--~~~~~~i-~~~v~~~~rg-~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~ 103 (145)
.++..=|.+.+....... ....+.+ -+.|.+..|| .|++-.+..++.+ .. -+.+...+.++|+
T Consensus 16 ~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~----~f--p~~L~Wrsr~~n~ 82 (108)
T cd04266 16 IAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD----GF--PNELIWRSRKDNP 82 (108)
T ss_pred EeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH----cC--CCceEEEeCCCCc
Confidence 355555555554432210 1233666 5889999997 8999999988875 21 1237777888875
No 200
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=31.89 E-value=95 Score=17.56 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=17.3
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-++.....+.....++..+|+++|++...
T Consensus 72 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~ 102 (107)
T cd04610 72 MDAARVMFRTGISKLPVVDENNNLVGIITNT 102 (107)
T ss_pred HHHHHHHHHhCCCeEeEECCCCeEEEEEEHH
Confidence 3333333333223444555578999998764
No 201
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=31.77 E-value=70 Score=18.96 Aligned_cols=30 Identities=13% Similarity=0.011 Sum_probs=20.2
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~ 120 (145)
++..+.+.|.- =.+|.+||.+ +||+.....
T Consensus 4 ~l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 4 RPGHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEeEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 45566665542 2488999976 999876653
No 202
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=31.65 E-value=92 Score=17.85 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=17.7
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-++.....+.....++..+|+++|++...
T Consensus 79 ~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~ 109 (114)
T cd04604 79 AEALELMEENKITALPVVDDNGRPVGVLHIH 109 (114)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCEEEEEEHH
Confidence 3333333333234455555589999998754
No 203
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=31.56 E-value=1.1e+02 Score=19.58 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=20.5
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGVLR 121 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~ 121 (145)
|+.++.+.|..- .+|.+||++ +||+...+..
T Consensus 1 gl~HI~i~V~Dl-e~s~~FY~~~LG~~~~~~~~ 32 (157)
T cd08347 1 GLHGVTLTVRDP-EATAAFLTDVLGFREVGEEG 32 (157)
T ss_pred CcccEEEEeCCH-HHHHHHHHHhcCCEEEeeeC
Confidence 345566655432 488999965 6999876543
No 204
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=31.31 E-value=1e+02 Score=17.46 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=12.8
Q ss_pred CceEEEEeCCEEEEEEEEe
Q 043366 28 PWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~ 46 (145)
.+..++..+|+++|++...
T Consensus 86 ~~~~vv~~~g~~~Gvit~~ 104 (109)
T cd04583 86 KYVPVVDEDGKLVGLITRS 104 (109)
T ss_pred ceeeEECCCCeEEEEEehH
Confidence 3444455578999998754
No 205
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=31.18 E-value=2.3e+02 Score=21.41 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=62.4
Q ss_pred ceEEEEeCCEEEEEEEEeeCCCCCC---------------------------CceeEE--EEEECcCccCCCHHHHHHHH
Q 043366 29 WFKAICLGNKPIGAILVTPNSGDCN---------------------------KCRAIL--GYVVASKYWGKGIATRAVKM 79 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~~~~~~~---------------------------~~~~~i--~~~v~~~~rg~G~g~~l~~~ 79 (145)
..+++.++|++||.+-++......+ ..+... .+.+++......+...|+..
T Consensus 45 ~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~ 124 (370)
T PF04339_consen 45 RHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQA 124 (370)
T ss_pred eEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHHH
Confidence 4577888999999998886543320 011111 24556666677788899999
Q ss_pred HHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeC
Q 043366 80 VTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLK 127 (145)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~ 127 (145)
+.+.+.+. +++.+.+. .++ +.-....+..||......+ +.+.|
T Consensus 125 ~~~~a~~~--~~Ss~h~l-F~~-~~~~~~l~~~G~~~r~~~q-f~W~N 167 (370)
T PF04339_consen 125 LEQLAEEN--GLSSWHIL-FPD-EEDAAALEEAGFLSRQGVQ-FHWHN 167 (370)
T ss_pred HHHHHHHc--CCCcceee-cCC-HHHHHHHHhCCCceecCCc-eEEec
Confidence 99999777 89888764 333 3455678899998754433 33343
No 206
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=30.79 E-value=68 Score=17.66 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCcEEEEEE
Q 043366 103 LASQKVLQKAGFKREGVL 120 (145)
Q Consensus 103 ~~a~~~~~k~Gf~~~~~~ 120 (145)
...++..++.||..+...
T Consensus 10 ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 10 KEVIKALEKDGFQLVRQK 27 (66)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 357899999999988753
No 207
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=30.70 E-value=1.3e+02 Score=22.51 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=33.8
Q ss_pred EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHH-HHHHHHcCcEEEEEEE
Q 043366 61 YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLAS-QKVLQKAGFKREGVLR 121 (145)
Q Consensus 61 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a-~~~~~k~Gf~~~~~~~ 121 (145)
++++|.+ .|+...++..+.+ . + .-++++|++...+- .+.+.+ ||+......
T Consensus 292 v~lDPPR--~G~~~~~l~~l~~-~-~-----~ivyvSC~p~tlarDl~~L~~-gY~l~~v~~ 343 (362)
T PRK05031 292 IFVDPPR--AGLDDETLKLVQA-Y-E-----RILYISCNPETLCENLETLSQ-THKVERFAL 343 (362)
T ss_pred EEECCCC--CCCcHHHHHHHHc-c-C-----CEEEEEeCHHHHHHHHHHHcC-CcEEEEEEE
Confidence 5679984 6888888888865 1 1 35899998844321 344444 998876544
No 208
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=30.56 E-value=1e+02 Score=19.31 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=20.7
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~ 120 (145)
.+.++.+.|.-- .+|.+||++ +||+.....
T Consensus 6 ~l~Hv~l~v~Dl-e~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 6 RLDHCLLTGEDI-AETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eeCEEEEecCCH-HHHHHHHHHhcCCEEEEEE
Confidence 455666665432 489999977 999876553
No 209
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=30.20 E-value=83 Score=18.04 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=18.3
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 15 GINFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
..+-++.....+.....++..+++++|++...
T Consensus 77 l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~ 108 (113)
T cd04587 77 VLEALHLMVQGKFRHLPVVDKSGQVVGLLDVT 108 (113)
T ss_pred HHHHHHHHHHcCCCcccEECCCCCEEEEEEHH
Confidence 34444444444233444555578999998754
No 210
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=30.11 E-value=1.1e+02 Score=18.02 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=25.1
Q ss_pred cccCCCc----hhHHHHHHhhhcCCCCceEEEEeCCEEEEEEEE
Q 043366 6 RFCTWES----EDGINFFKNKVINNHPWFKAICLGNKPIGAILV 45 (145)
Q Consensus 6 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~ 45 (145)
+-+|+.+ ++..+-+++.+. ..+.+. ..+-++|||.--
T Consensus 9 kV~P~d~evdl~~L~~~ik~~l~--~g~~~~-~~~~epIaFGLk 49 (88)
T COG2092 9 KVMPDDPEVDLEELEEKIKEKLP--EGYELI-KIEEEPIAFGLK 49 (88)
T ss_pred EecCCCCCCCHHHHHHHHHHhcc--ccceec-cceeEeeeeeee
Confidence 4577777 777777777773 345444 558899998743
No 211
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=30.09 E-value=3e+02 Score=22.24 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=24.5
Q ss_pred CcceEEEEecCCCHHHHHHHHHcCcEEEEEEEe
Q 043366 90 HLQRLEATVDVDNLASQKVLQKAGFKREGVLRK 122 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~ 122 (145)
|++++.+-+ .|+.-+.-.+..|.+++++.+-
T Consensus 350 GI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 350 GIKRLRLIT--NNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred CCCEEEECC--CCHHHHHHHHhCCCEEEEEecc
Confidence 888887655 4877788889999999887653
No 212
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.92 E-value=1.8e+02 Score=22.25 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=33.8
Q ss_pred ECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEE
Q 043366 63 VASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 63 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
..++.|.-|+|.++++ .+ |++++.+-+ .|..-+.-.+..|.+++++.+
T Consensus 309 ~~~D~RdygigAqIL~--------dL-GV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 309 FKEDERDYAAAFQILK--------AL-GIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred CCccceeeeHHHHHHH--------Hc-CCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 3456777777766654 34 888887655 477777788899999987654
No 213
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=29.73 E-value=87 Score=18.09 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=21.4
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGVLR 121 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~ 121 (145)
++.++.+.|..- .+|+.||.. +||+......
T Consensus 2 ~l~hv~l~v~dl-~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 2 GIHHVTLAVPDL-EASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred ceEEEEEeeCCH-hHhHHHHHhhcCCeeeeecc
Confidence 344555555442 489999987 9999887654
No 214
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=29.68 E-value=1.2e+02 Score=19.18 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEE
Q 043366 71 GIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 71 G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~ 118 (145)
.+..+|..++.+-..+.+-++.++...+.+.|+..-++.+..||-...
T Consensus 104 kitnemfiqmtqpiydslmnvdrlgiyinpnneevfalvrargfdkda 151 (192)
T PRK12303 104 KITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDA 151 (192)
T ss_pred HHhHHHHHHhccHHHHHhhcchheeeeeCCCcHHHHHHHHHhcCCHHH
Confidence 444455444444333332267788999999999999999999997543
No 215
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=29.51 E-value=34 Score=19.51 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHc
Q 043366 75 RAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKA 112 (145)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~ 112 (145)
+|+..+.+.-|... =-.+++.|.+++..|+..|...
T Consensus 3 ~LL~~I~~~~Fa~~--dl~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 3 ELLREIQEVSFAVV--DLNLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHHHHHHHhhHHH--HHHHHhcCCCCcHHHHHHHHHH
Confidence 45555555544431 2248899999999999888754
No 216
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=29.41 E-value=1.2e+02 Score=17.52 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=18.5
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 15 GINFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
..+-++.+...+.....++..+|+++|.++..
T Consensus 75 l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~ 106 (111)
T cd04603 75 VTDLLRIFRETEPPVVAVVDKEGKLVGTIYER 106 (111)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhH
Confidence 34455554444223344454579999998754
No 217
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.34 E-value=1.6e+02 Score=21.56 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=27.8
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecC-CCHHHHHHHHHcC
Q 043366 67 YWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDV-DNLASQKVLQKAG 113 (145)
Q Consensus 67 ~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~-~N~~a~~~~~k~G 113 (145)
--|.|+|+++..++. ++ |..-+..+++. .|....+-.++.|
T Consensus 45 Ggg~GlGr~ialefa----~r--g~~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 45 GGGSGLGRLIALEFA----KR--GAKLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred CCCchHHHHHHHHHH----Hh--CCeEEEEeccccchHHHHHHHHhcC
Confidence 457799999987776 33 56555666655 4556667777776
No 218
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=29.29 E-value=1.2e+02 Score=17.42 Aligned_cols=31 Identities=13% Similarity=-0.147 Sum_probs=17.4
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-++.....+.....++..+|+++|.+...
T Consensus 78 ~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~ 108 (113)
T cd04615 78 AKARWLMSNNNISRLPVLDDKGKVGGIVTED 108 (113)
T ss_pred HHHHHHHHHcCCCeeeEECCCCeEEEEEEHH
Confidence 3344444333223445555578999998754
No 219
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=28.81 E-value=86 Score=18.45 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=13.3
Q ss_pred HHHHHHHHH-cCcEEEEE
Q 043366 103 LASQKVLQK-AGFKREGV 119 (145)
Q Consensus 103 ~~a~~~~~k-~Gf~~~~~ 119 (145)
.+|++||.+ +||+....
T Consensus 11 ~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 11 EAARAFYGDVLGCKEGRS 28 (125)
T ss_pred HHHHHHHHHhcCCEEeec
Confidence 478999985 89988654
No 220
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=28.62 E-value=1e+02 Score=22.48 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEE
Q 043366 71 GIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 71 G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~ 118 (145)
|+|+-.+.++......+. |.+.+.+++++...-+--|=.++|-+.+.
T Consensus 11 GVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~ 57 (305)
T PF02374_consen 11 GVGKTTVAAALALALARR-GKRTLLVSTDPAHSLSDVLGQKLGGEPTK 57 (305)
T ss_dssp TSSHHHHHHHHHHHHHHT-TS-EEEEESSTTTHHHHHHTS--BSS-EE
T ss_pred CCCcHHHHHHHHHHHhhC-CCCeeEeecCCCccHHHHhCCcCCCCCeE
Confidence 888888887777766665 89999999998776555555555554443
No 221
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=28.58 E-value=1.3e+02 Score=17.80 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=16.9
Q ss_pred HHHHHhhhcCCCCceEEEEeC-CEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLG-NKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~-~~~vG~~~~~ 46 (145)
.+-++.+...+.....++..+ |.++|.++..
T Consensus 90 ~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~ 121 (126)
T cd04640 90 GDVVETLKASGRQHALVVDREHHQIRGIISTS 121 (126)
T ss_pred HHHHHHHHHCCCceEEEEECCCCEEEEEEeHH
Confidence 334444444422334444445 7999998764
No 222
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=28.53 E-value=67 Score=17.70 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=21.4
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeCCEEEEE
Q 043366 13 EDGINFFKNKVINNHPWFKAICLGNKPIGA 42 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 42 (145)
+...+.+++.......+.+++..+|.+|..
T Consensus 39 ~~l~~~i~~~~~~~~g~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 39 DQLSEIISNIKFGNNGYAFIVDKNGTIIAH 68 (81)
T ss_dssp HHHHHHHTTSBBTTTBEEEEEETTSBBCE-
T ss_pred ceeeeEEEeeEECCCEEEEEEECCCCEEEe
Confidence 566677776665567788888889988754
No 223
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.47 E-value=1.1e+02 Score=18.06 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=12.9
Q ss_pred HHHHHHHHH-cCcEEEE
Q 043366 103 LASQKVLQK-AGFKREG 118 (145)
Q Consensus 103 ~~a~~~~~k-~Gf~~~~ 118 (145)
.+|.+||.+ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 12 EKTLEFYERAFGFERRF 28 (125)
T ss_pred HHHHHHHHHhhCCeEEe
Confidence 388999988 7998754
No 224
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.44 E-value=2e+02 Score=20.20 Aligned_cols=40 Identities=8% Similarity=0.083 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCcceEEEEec---CCCHHHHHHHHHcCcEEEEE
Q 043366 78 KMVTGIIFDEWPHLQRLEATVD---VDNLASQKVLQKAGFKREGV 119 (145)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~---~~N~~a~~~~~k~Gf~~~~~ 119 (145)
.++++-+ +.+ |++++.+-+. .-|....++|++.||+.+..
T Consensus 109 ~A~~~AL-~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 109 SAAVDGL-AAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHHH-HHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 3334433 445 8999987543 34778889999999998875
No 225
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=28.35 E-value=1.4e+02 Score=18.21 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=20.9
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~ 119 (145)
++.++.+.|. +-.+|++||.+ +||.....
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 5677777664 44589999977 99976543
No 226
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=28.23 E-value=83 Score=21.00 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=21.6
Q ss_pred CcceEEEEecCCC-HHHHHHHHH-cCcEEEEEE
Q 043366 90 HLQRLEATVDVDN-LASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 90 ~~~~i~~~~~~~N-~~a~~~~~k-~Gf~~~~~~ 120 (145)
++.++.+.|..++ ..+..||.+ +||+.....
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~ 35 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSF 35 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEE
Confidence 4667777665434 378899965 999877653
No 227
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=27.92 E-value=1.6e+02 Score=18.60 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=39.4
Q ss_pred EEECcCccCCCHHHHHHHHH-HHHHhhcCCCcceEEEEecC---CCHHHHHHHHHcCcEEEEEEE
Q 043366 61 YVVASKYWGKGIATRAVKMV-TGIIFDEWPHLQRLEATVDV---DNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 61 ~~v~~~~rg~G~g~~l~~~~-~~~~~~~~~~~~~i~~~~~~---~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
+.+..+-.+.=++-.+.... .+-+++ . |+..+.+.+.- .-+++++.+...|++......
T Consensus 50 ~gfk~~rk~tpyAA~~aa~~aa~~a~e-~-Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~D 112 (129)
T COG0100 50 MGFKGSRKSTPYAAQLAAEDAAKKAKE-H-GIKSVEVKVKGPGPGREAAIRALAAAGLKITRIED 112 (129)
T ss_pred ceEcCCCCCCHHHHHHHHHHHHHHHHH-h-CccEEEEEEECCCCcHHHHHHHHHHccceEEEEEE
Confidence 44443335555665544443 344545 4 99999888754 678999999999999876644
No 228
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=27.82 E-value=45 Score=27.96 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEeeEEeCCeEe
Q 043366 89 PHLQRLEATVDVDNLASQKVLQKAGFKREGVLRKYITLKGKAT 131 (145)
Q Consensus 89 ~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~ 131 (145)
|-+-.+.++....|.....+..+.||+.+....+.+.+||+..
T Consensus 258 P~LY~l~~~L~~~~~~~d~~~~~iGfR~iei~~~~~~iNGkpv 300 (808)
T COG3250 258 PYLYRLVVTLKDANTLIDAEALRIGFRTVEIKDGLLLINGKPV 300 (808)
T ss_pred CceEEEEEEEEeCCceeeEEEeeeccEEEEEECCeEEECCeEE
No 229
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.81 E-value=1.1e+02 Score=17.97 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=17.5
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-++.+...+.....++..+++++|.++..
T Consensus 88 ~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~ 118 (123)
T cd04627 88 IDALHLMHNEGISSVAVVDNQGNLIGNISVT 118 (123)
T ss_pred HHHHHHHHHcCCceEEEECCCCcEEEEEeHH
Confidence 4444444444223344444578999998764
No 230
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=27.45 E-value=84 Score=18.50 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=20.2
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~ 119 (145)
++.++.+.|.. =..+.+||.+ +||+....
T Consensus 4 ~i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTD-LEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCC-HHHHHHHHHhccCCEEecc
Confidence 45666766642 2378899987 99987654
No 231
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.41 E-value=1.1e+02 Score=17.95 Aligned_cols=27 Identities=4% Similarity=-0.124 Sum_probs=17.8
Q ss_pred ceEEEEecCCCHHHHHHHHH-cCcEEEEE
Q 043366 92 QRLEATVDVDNLASQKVLQK-AGFKREGV 119 (145)
Q Consensus 92 ~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~ 119 (145)
.++.+.|.. =.+|.+||++ +||+....
T Consensus 3 ~Hi~l~v~d-l~~s~~FY~~~lg~~~~~~ 30 (125)
T cd07241 3 EHVAIWTKD-LERMKAFYVTYFGATSNEK 30 (125)
T ss_pred eEEEEEecC-HHHHHHHHHHHhCCEeece
Confidence 455655542 2378899988 79986543
No 232
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.36 E-value=76 Score=18.27 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=14.8
Q ss_pred HHHHHHHHH-cCcEEEEEE
Q 043366 103 LASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 103 ~~a~~~~~k-~Gf~~~~~~ 120 (145)
.++.+||.+ +||+.....
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 478899998 999987654
No 233
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=27.08 E-value=2.3e+02 Score=21.27 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=20.8
Q ss_pred CcceEEEEecCCCHHHHHHHHHcCcEEEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
.-+.+++ -.+.=+....+++|.||+-+...+
T Consensus 124 ~~~~VY~-SnPTW~nH~~if~~aGf~tv~~Y~ 154 (410)
T KOG1412|consen 124 NKNTVYV-SNPTWENHHAIFEKAGFTTVATYP 154 (410)
T ss_pred ccceeEe-cCCchhHHHHHHHHcCCceeeeee
Confidence 3344555 334345677899999999888755
No 234
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=27.07 E-value=1.5e+02 Score=18.32 Aligned_cols=20 Identities=5% Similarity=-0.054 Sum_probs=14.2
Q ss_pred CceEEEEeCCEEEEEEEEee
Q 043366 28 PWFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~ 47 (145)
..++++..+|+++|.+....
T Consensus 25 ~~~~VvD~~g~l~Givt~~D 44 (133)
T cd04592 25 SCVLVVDSDDFLEGILTLGD 44 (133)
T ss_pred CEEEEECCCCeEEEEEEHHH
Confidence 34555556799999999654
No 235
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=26.97 E-value=1.1e+02 Score=19.35 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.2
Q ss_pred CCceEEEEeCCEEEEEEEEeeCCCC
Q 043366 27 HPWFKAICLGNKPIGAILVTPNSGD 51 (145)
Q Consensus 27 ~~~~~~~~~~~~~vG~~~~~~~~~~ 51 (145)
....+-+..+|++||.+++...+..
T Consensus 71 ~GinlPI~~~g~~iGviGItG~p~e 95 (135)
T PF05651_consen 71 PGINLPIIFNGEVIGVIGITGEPEE 95 (135)
T ss_pred cceeeeEEECCEEEEEEEEecCHHH
Confidence 3456777889999999999987654
No 236
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=26.91 E-value=1.3e+02 Score=17.19 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=18.1
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 15 GINFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
..+-++.....+.....++..+|+++|.+...
T Consensus 72 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~ 103 (108)
T cd04596 72 VASVAHMMIWEGIEMLPVVDDNKKLLGIISRQ 103 (108)
T ss_pred HHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHH
Confidence 44444444433233444555578999998754
No 237
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=26.89 E-value=1.2e+02 Score=17.27 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=13.0
Q ss_pred ceEEEEeCCEEEEEEEEee
Q 043366 29 WFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~ 47 (145)
.++++..+|+++|.+....
T Consensus 26 ~~~v~d~~~~~~G~v~~~~ 44 (112)
T cd04624 26 SVVVVDPDERPIGIVTERD 44 (112)
T ss_pred EEEEECCCCCEEEEeeHHH
Confidence 4444555799999987554
No 238
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.72 E-value=1.4e+02 Score=17.35 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=14.0
Q ss_pred HHHHHHHHH-cCcEEEEEE
Q 043366 103 LASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 103 ~~a~~~~~k-~Gf~~~~~~ 120 (145)
..|.+||.+ +||+.....
T Consensus 13 ~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 13 AAAIDFYKKAFGAEELERM 31 (122)
T ss_pred HHHHHHHHHhhCCEEEEEE
Confidence 478999985 899987654
No 239
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=26.68 E-value=1.2e+02 Score=17.28 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=17.7
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEee
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 47 (145)
.+-++.....+.....++..+|+++|.+....
T Consensus 73 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d 104 (109)
T cd04606 73 EEVARLFEKYDLLALPVVDEEGRLVGIITVDD 104 (109)
T ss_pred HHHHHHHHHcCCceeeeECCCCcEEEEEEhHH
Confidence 33333333332234445555789999987653
No 240
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=26.64 E-value=87 Score=21.69 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEE
Q 043366 70 KGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKR 116 (145)
Q Consensus 70 ~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~ 116 (145)
.|+|.+....++-+++.+ ..+.+++ -+.++..++|+..
T Consensus 127 ~GIG~kTAd~iLlya~~r----p~fvVDt-----y~~Rv~~RlG~~~ 164 (218)
T PRK13913 127 KGIGKESADAILCYVCAK----EVMVVDK-----YSYLFLKKLGIEI 164 (218)
T ss_pred CCccHHHHHHHHHHHcCC----Cccccch-----hHHHHHHHcCCCC
Confidence 499999999999998654 3344433 4789999999953
No 241
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=26.58 E-value=1.5e+02 Score=17.87 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=13.3
Q ss_pred HHHHHHHHH-cCcEEEEE
Q 043366 103 LASQKVLQK-AGFKREGV 119 (145)
Q Consensus 103 ~~a~~~~~k-~Gf~~~~~ 119 (145)
.+|.+||.+ +||+....
T Consensus 11 ~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 11 AATAAFYTEVLGFRVSDR 28 (131)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 378899987 89997654
No 242
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=26.51 E-value=1e+02 Score=18.57 Aligned_cols=28 Identities=7% Similarity=0.106 Sum_probs=17.9
Q ss_pred cceEEEEecCCCHHHHHHHHH-cCcEEEEE
Q 043366 91 LQRLEATVDVDNLASQKVLQK-AGFKREGV 119 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~ 119 (145)
+..+.+.|. +=..|.+||.+ +||+....
T Consensus 7 l~~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 7 IAYVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred eeEEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 445555443 22378899988 79987544
No 243
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=26.47 E-value=1.9e+02 Score=19.41 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=21.7
Q ss_pred ceEEEEecCCCHHHHHHHHHcCcEEEEEEEee
Q 043366 92 QRLEATVDVDNLASQKVLQKAGFKREGVLRKY 123 (145)
Q Consensus 92 ~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~~ 123 (145)
..+.+.+. +=..+..+++++||..+....+.
T Consensus 79 ~E~E~~v~-D~~~~~~il~~LGF~~~~~VkK~ 109 (178)
T COG1437 79 EEIEIEVS-DVEKALEILKRLGFKEVAVVKKT 109 (178)
T ss_pred eeEEEEeC-CHHHHHHHHHHcCCceeeEEEEE
Confidence 34555554 33468899999999988776553
No 244
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=26.27 E-value=1.3e+02 Score=17.09 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=11.7
Q ss_pred eEEEEeCCEEEEEEEEe
Q 043366 30 FKAICLGNKPIGAILVT 46 (145)
Q Consensus 30 ~~~~~~~~~~vG~~~~~ 46 (145)
..++..+|+++|++...
T Consensus 90 ~~Vv~~~~~~~Gvi~~~ 106 (111)
T cd04611 90 LVVVDDDGELLGLLSQT 106 (111)
T ss_pred EEEECCCCcEEEEEEhH
Confidence 34444568999998764
No 245
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=26.23 E-value=1.2e+02 Score=17.50 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=12.1
Q ss_pred ceEEEEeCCEEEEEEEEe
Q 043366 29 WFKAICLGNKPIGAILVT 46 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~ 46 (145)
...++..+|+++|.++..
T Consensus 100 ~~~Vv~~~~~~~Gvvt~~ 117 (122)
T cd04585 100 GLPVVDDQGRLVGIITES 117 (122)
T ss_pred ceeEECCCCcEEEEEEHH
Confidence 344444468999998754
No 246
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.15 E-value=1.5e+02 Score=17.54 Aligned_cols=29 Identities=24% Similarity=0.254 Sum_probs=19.9
Q ss_pred cceEEEEecCCCHHHHHHHHHc----CcEEEEEE
Q 043366 91 LQRLEATVDVDNLASQKVLQKA----GFKREGVL 120 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k~----Gf~~~~~~ 120 (145)
+.++.+.|. +=.++.+||+++ ||+.....
T Consensus 2 i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 2 IHHVELTVR-DLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred CceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEee
Confidence 456666663 234788999886 99987653
No 247
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=26.09 E-value=1.3e+02 Score=17.23 Aligned_cols=31 Identities=3% Similarity=-0.050 Sum_probs=16.9
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-++.....+.....++..+|+++|.++..
T Consensus 78 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 108 (113)
T cd04607 78 EEILALMRERSIRHLPILDEEGRVVGLATLD 108 (113)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCEEEEEEhH
Confidence 3333433333223344444578999998754
No 248
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.02 E-value=1.1e+02 Score=16.12 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=18.3
Q ss_pred cceEEEEecCCCH-HHHHHHHHcCcEEEE
Q 043366 91 LQRLEATVDVDNL-ASQKVLQKAGFKREG 118 (145)
Q Consensus 91 ~~~i~~~~~~~N~-~a~~~~~k~Gf~~~~ 118 (145)
...+.+.+...+. ...+..++.||+...
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3345565554455 777888888987653
No 249
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.00 E-value=1.1e+02 Score=18.08 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.8
Q ss_pred HHHHHHHH-HcCcEEEEEE
Q 043366 103 LASQKVLQ-KAGFKREGVL 120 (145)
Q Consensus 103 ~~a~~~~~-k~Gf~~~~~~ 120 (145)
.+|.+||+ .+||+.....
T Consensus 11 ~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 11 AAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred HHHHHHHHHhcCCEEEEEE
Confidence 48999998 8999987654
No 250
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.77 E-value=1.5e+02 Score=17.45 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=17.8
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 15 GINFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
..+.++.+...+.....++..+|+++|.+...
T Consensus 77 l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~ 108 (113)
T cd04597 77 LREALNLMHEHNIRTLPVVDDDGTPAGIITLL 108 (113)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence 33434433333223444555578999998764
No 251
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=25.66 E-value=3.4e+02 Score=21.51 Aligned_cols=37 Identities=5% Similarity=0.079 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcE
Q 043366 77 VKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115 (145)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~ 115 (145)
+.++++.+++. |+.++.+-+......+.++.+++|..
T Consensus 367 ~~e~i~~L~~~--Gi~~v~vvTgd~~~~a~~i~~~lgi~ 403 (536)
T TIGR01512 367 AAEAIAELKAL--GIEKVVMLTGDRRAVAERVARELGID 403 (536)
T ss_pred HHHHHHHHHHc--CCCcEEEEcCCCHHHHHHHHHHcCCh
Confidence 45556666565 77456665666666788888888873
No 252
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=25.51 E-value=1.5e+02 Score=17.18 Aligned_cols=31 Identities=0% Similarity=-0.184 Sum_probs=17.8
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-++.....+.....++..+|.++|++...
T Consensus 79 ~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~ 109 (114)
T cd04602 79 EEANEILRESKKGKLPIVNDDGELVALVTRS 109 (114)
T ss_pred HHHHHHHHhcCCCceeEECCCCeEEEEEEHH
Confidence 3344444444233444555578999998764
No 253
>PRK14968 putative methyltransferase; Provisional
Probab=25.50 E-value=1.9e+02 Score=18.58 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEEe
Q 043366 75 RAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLRK 122 (145)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~~ 122 (145)
.++..+..+++.. |.--+.......+.....++++.||+.......
T Consensus 129 ~~i~~~~~~Lk~g--G~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 129 RFLDEVGRYLKPG--GRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHHhcCCC--eEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 4555666655333 422233333334667889999999987765443
No 254
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=25.39 E-value=2.1e+02 Score=22.33 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=30.9
Q ss_pred CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEE
Q 043366 64 ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 64 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
.++.|.-|+|.++++ .+ |++++.+-++ |..-+.-.+..|.+++++.+
T Consensus 363 ~~D~RdygigAqIL~--------dL-GI~~irLLTN--Np~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 363 PVDSREYGIGAQILR--------DL-GVRTMRLMTN--NPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred cccceehHHHHHHHH--------Hc-CCCEEEECCC--CHHHHHHHhhCCCEEEEEec
Confidence 344555555555443 34 7888876553 77677778899999887664
No 255
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=25.32 E-value=1e+02 Score=15.70 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=11.5
Q ss_pred HHHHHHHcCcEEEEE
Q 043366 105 SQKVLQKAGFKREGV 119 (145)
Q Consensus 105 a~~~~~k~Gf~~~~~ 119 (145)
..++++++||+....
T Consensus 4 l~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 4 LIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHTT-EEEEE
T ss_pred HHHHHHHCCCEEecC
Confidence 568999999998854
No 256
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=25.25 E-value=1.5e+02 Score=17.25 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=12.8
Q ss_pred HHHHHHHH-cCcEEEEE
Q 043366 104 ASQKVLQK-AGFKREGV 119 (145)
Q Consensus 104 ~a~~~~~k-~Gf~~~~~ 119 (145)
+|..||.+ +||+....
T Consensus 14 ~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 14 ETADFYVRHFGFTVVFD 30 (119)
T ss_pred HHHHHHHHhhCcEEEec
Confidence 78999965 99987754
No 257
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.11 E-value=1.4e+02 Score=16.93 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=13.3
Q ss_pred ceEEEEeCCEEEEEEEEee
Q 043366 29 WFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~ 47 (145)
..+++..+|+++|.+....
T Consensus 27 ~~~V~d~~~~~~G~v~~~~ 45 (110)
T cd04605 27 HLPVVDEDGRLVGIVTSWD 45 (110)
T ss_pred eEEEECCCCcEEEEEeHHH
Confidence 4444555789999998654
No 258
>PRK15452 putative protease; Provisional
Probab=25.06 E-value=1.7e+02 Score=22.74 Aligned_cols=23 Identities=26% Similarity=0.266 Sum_probs=18.2
Q ss_pred EEecCCCHHHHHHHHHcCcEEEE
Q 043366 96 ATVDVDNLASQKVLQKAGFKREG 118 (145)
Q Consensus 96 ~~~~~~N~~a~~~~~k~Gf~~~~ 118 (145)
..+...|..+.+||+.+|+..+-
T Consensus 117 tqlni~N~~a~~f~~~lG~~rvv 139 (443)
T PRK15452 117 VQANAVNWATVKFWQQMGLTRVI 139 (443)
T ss_pred ecccCCCHHHHHHHHHCCCcEEE
Confidence 34566899999999999997553
No 259
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=25.03 E-value=85 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCcEEEEEEEeeEEeCCeEeEEEEEEe
Q 043366 103 LASQKVLQKAGFKREGVLRKYITLKGKATDVVMFSL 138 (145)
Q Consensus 103 ~~a~~~~~k~Gf~~~~~~~~~~~~~g~~~~~~~~~l 138 (145)
..-+++++++|++.+......- ++....++.+|.|
T Consensus 183 ~~~~~lF~~AGl~~v~~~~Q~~-fP~~L~pV~myaL 217 (218)
T PF05891_consen 183 EHFRELFKQAGLRLVKEEKQKG-FPKELYPVRMYAL 217 (218)
T ss_dssp HHHHHHHHHCT-EEEEEEE-TT---TTS-EEEEEEE
T ss_pred HHHHHHHHHcCCEEEEeccccC-CCccceEEEEEEe
Confidence 3456899999999998765433 3556778877765
No 260
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=24.88 E-value=1.5e+02 Score=17.25 Aligned_cols=31 Identities=3% Similarity=-0.025 Sum_probs=17.4
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-+......+.....++..+|+++|++...
T Consensus 87 ~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~ 117 (122)
T cd04635 87 ATAVELMLEHDIGRLPVVNEKDQLVGIVDRH 117 (122)
T ss_pred HHHHHHHHHcCCCeeeEEcCCCcEEEEEEhH
Confidence 3333333333223445555578999998754
No 261
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.80 E-value=2.1e+02 Score=19.93 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=38.9
Q ss_pred EEEeCCEEEEEEEEeeCCCCCCCceeEEEEE-ECcCccCCCHHHHHHHHHHHHHhhc
Q 043366 32 AICLGNKPIGAILVTPNSGDCNKCRAILGYV-VASKYWGKGIATRAVKMVTGIIFDE 87 (145)
Q Consensus 32 ~~~~~~~~vG~~~~~~~~~~~~~~~~~i~~~-v~~~~rg~G~g~~l~~~~~~~~~~~ 87 (145)
....+...||.+.+.+..... ..+.+.+. -+|.+-..|.||.+++.+...+...
T Consensus 158 l~~~ea~~vgSvAi~~L~~~~--~~gllafgS~D~~hf~~gmGT~fL~~la~vl~~~ 212 (218)
T COG3159 158 LGLPEAKAVGSVAIVPLGSQA--PLGLLAFGSRDPRHFQPGMGTLFLRHLALVLARL 212 (218)
T ss_pred ccCCcccccceeEEEEccCCC--CceEEEecCCCccccCCCcchHHHHHHHHHHHHH
Confidence 334478899999988877542 22555554 3788888999999999988776543
No 262
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.60 E-value=97 Score=21.97 Aligned_cols=36 Identities=19% Similarity=0.090 Sum_probs=30.2
Q ss_pred cCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecC-CC
Q 043366 65 SKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDV-DN 102 (145)
Q Consensus 65 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~-~N 102 (145)
+...|.-.|...+..++.|+.+. |++.+.+.+.. +|
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~--GI~~vT~yaFS~eN 77 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDW--GIGALTAYAFSTEN 77 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHc--CCCEEEEeecchhh
Confidence 45667788999999999999776 99999998887 44
No 263
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=24.59 E-value=1.1e+02 Score=19.17 Aligned_cols=29 Identities=17% Similarity=-0.043 Sum_probs=20.2
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~ 119 (145)
++.++.+.|..- .+|.+||.. +||+....
T Consensus 17 ~i~hv~l~v~Dl-~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 17 RLLHTMLRVGDL-DKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred eEEEEEEEecCH-HHHHHHHHHhcCCEEEEE
Confidence 566677766533 388999975 89987653
No 264
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.54 E-value=1.5e+02 Score=17.13 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=20.9
Q ss_pred CcceEEEEecCCCHHHHHHHH-HcCcEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQ-KAGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~-k~Gf~~~~~ 119 (145)
++.++.+.|. +=.+|.+||. .+||+....
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEeee
Confidence 5677777774 3347889997 499987643
No 265
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=24.40 E-value=1.5e+02 Score=16.88 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=14.1
Q ss_pred HHHHHHHH-cCcEEEEEE
Q 043366 104 ASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 104 ~a~~~~~k-~Gf~~~~~~ 120 (145)
.|.+||++ +||+.....
T Consensus 11 ~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 11 RSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHhccCeEEEEEc
Confidence 78899999 999976654
No 266
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=24.04 E-value=1.6e+02 Score=17.20 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=16.9
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
.+-++...........++..+|+++|++...
T Consensus 89 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~ 119 (124)
T cd04600 89 AELVPLLADGGHHHVPVVDEDRRLVGIVTQT 119 (124)
T ss_pred HHHHHHHHhcCCCceeEEcCCCCEEEEEEhH
Confidence 3333433333223344444589999998754
No 267
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=23.86 E-value=1.5e+02 Score=16.75 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=16.6
Q ss_pred HHHhhhcCCCCceEEEEeCCEEEEEEEEee
Q 043366 18 FFKNKVINNHPWFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 47 (145)
-++.....+.....++..+|+++|.+....
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~d 106 (110)
T cd04601 77 ALELLHEHKIEKLPVVDDEGKLKGLITVKD 106 (110)
T ss_pred HHHHHHHhCCCeeeEEcCCCCEEEEEEhhh
Confidence 333333332233444445789999987653
No 268
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=23.83 E-value=1.5e+02 Score=16.83 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=12.7
Q ss_pred ceEEEEeCCEEEEEEEEee
Q 043366 29 WFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~ 47 (145)
.+.++..+|+++|.+....
T Consensus 26 ~~~V~~~~~~~~G~v~~~~ 44 (111)
T cd04639 26 EFPVVDGDGHLVGLLTRDD 44 (111)
T ss_pred cceEECCCCcEEEEeeHHH
Confidence 3444555689999997543
No 269
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=23.70 E-value=1.7e+02 Score=17.30 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=13.1
Q ss_pred CceEEEEeCCEEEEEEEEe
Q 043366 28 PWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~ 46 (145)
...+++..+|+++|+++..
T Consensus 25 ~~~~Vv~~~~~~~G~it~~ 43 (128)
T cd04632 25 SRLPVVDDNGKLTGIVTRH 43 (128)
T ss_pred CEEEEECCCCcEEEEEEHH
Confidence 3444555579999999844
No 270
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=23.63 E-value=1.5e+02 Score=16.75 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=17.1
Q ss_pred HHHHHhhhcCCCCceEEEEeCCEEEEEEEEe
Q 043366 16 INFFKNKVINNHPWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 46 (145)
..-++.....+.....++..+|+++|+++..
T Consensus 76 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~ 106 (111)
T cd04612 76 RDALKRMAERDIGRLPVVDDSGRLVGIVSRS 106 (111)
T ss_pred HHHHHHHHhCCCCeeeEEcCCCCEEEEEEHH
Confidence 3333433333223444444469999998765
No 271
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=23.63 E-value=94 Score=18.45 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=19.0
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~ 119 (145)
++..+.+.|..- .+|.+||.. +||+....
T Consensus 2 ~l~~v~l~v~Dl-~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDL-DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCH-HHHHHHHHhccCceeccC
Confidence 345566655432 378999977 79987543
No 272
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=23.42 E-value=1.6e+02 Score=17.31 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=20.8
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGVLR 121 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~ 121 (145)
++..+.+.|.. =.+|.+||.+ +||+......
T Consensus 6 ~i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~~~ 37 (121)
T cd09013 6 HLAHVELLTPK-PEESLWFFTDVLGLEETGREG 37 (121)
T ss_pred EeeEEEEEeCC-HHHHHHHHHhCcCCEEEeecC
Confidence 45566665532 2488999987 6998876543
No 273
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=23.29 E-value=3.4e+02 Score=20.66 Aligned_cols=80 Identities=11% Similarity=-0.034 Sum_probs=53.4
Q ss_pred ceEEEEe-CCEEEEEEEEeeCCCCC----CCceeEEE---EEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecC
Q 043366 29 WFKAICL-GNKPIGAILVTPNSGDC----NKCRAILG---YVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDV 100 (145)
Q Consensus 29 ~~~~~~~-~~~~vG~~~~~~~~~~~----~~~~~~i~---~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~ 100 (145)
+.|+++. +|.+-+|++++..+..- ...+...+ +.+..+-+ -.+|+..++-.|+.. |+.-..+-..-
T Consensus 308 ~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl~aaYlyY~v~~~t~----~~~lvnDalilak~~--gfDVFNAld~m 381 (421)
T KOG2779|consen 308 YSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTLQAAYLYYNVATSTP----LLQLVNDALILAKQK--GFDVFNALDLM 381 (421)
T ss_pred EEEEEECCCCcccceeeEEeccccccCCCCcceeeeeeEEEeccCCcc----HHHHHHHHHHHHHhc--CCceeehhhhh
Confidence 4566666 89999999998665421 11223333 33554422 457888888888777 88877776666
Q ss_pred CCHHHHHHHHHcCcEEE
Q 043366 101 DNLASQKVLQKAGFKRE 117 (145)
Q Consensus 101 ~N~~a~~~~~k~Gf~~~ 117 (145)
+|+ .|+++++|-.-
T Consensus 382 eN~---~fl~~LkFg~G 395 (421)
T KOG2779|consen 382 ENE---SFLKDLKFGPG 395 (421)
T ss_pred hhh---hHHHhcCcCcC
Confidence 776 49999999653
No 274
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.17 E-value=1.6e+02 Score=17.29 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=17.4
Q ss_pred eEEEEecCCCH-HHHHHHHH----cCcEEEEEE
Q 043366 93 RLEATVDVDNL-ASQKVLQK----AGFKREGVL 120 (145)
Q Consensus 93 ~i~~~~~~~N~-~a~~~~~k----~Gf~~~~~~ 120 (145)
++.+.| .|. +|.+||++ +|+......
T Consensus 3 hv~l~v--~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 3 HVTLGV--NDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEEec--CcHHHHHHHHHHHHhhcCceEEeec
Confidence 344444 343 78999998 599987553
No 275
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=23.10 E-value=1.6e+02 Score=16.72 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=13.2
Q ss_pred ceEEEEeCCEEEEEEEEee
Q 043366 29 WFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~ 47 (145)
.+.++..+++++|.+....
T Consensus 26 ~~~V~~~~~~~~Giv~~~~ 44 (113)
T cd04623 26 AVVVVDDGGRLVGIFSERD 44 (113)
T ss_pred eEEEECCCCCEEEEEehHH
Confidence 3444445689999998754
No 276
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=23.05 E-value=2.1e+02 Score=18.11 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=21.1
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeCCEEEEEEEEee
Q 043366 13 EDGINFFKNKVINNHPWFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 47 (145)
.+...++.-.+.. + -+.++..+|.||||++-..
T Consensus 22 ~~l~~~~lpai~~-~-Q~~l~~~~g~Pvaf~~WA~ 54 (133)
T PF02794_consen 22 SDLEQLLLPAIKL-G-QYRLYSEDGRPVAFCSWAF 54 (133)
T ss_pred HHHHHHHHHHHhh-C-cEEEEEeCCeEEEEEEhhc
Confidence 4555555555554 3 3334448999999999664
No 277
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=23.03 E-value=1.8e+02 Score=17.41 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=18.9
Q ss_pred ceEEEEecCCCHHHHHHHHH-cCcEEEEEEE
Q 043366 92 QRLEATVDVDNLASQKVLQK-AGFKREGVLR 121 (145)
Q Consensus 92 ~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~~ 121 (145)
.++.+.|.. =.++.+||.+ +||+......
T Consensus 3 ~hv~l~v~D-~~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 3 SHVVLYVRD-LEAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred eEEEEEecC-HHHHHHHHHHhcCCEEEeecc
Confidence 345554432 2378899987 9999876544
No 278
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=22.89 E-value=1.2e+02 Score=19.36 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=19.3
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREG 118 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~ 118 (145)
++.++.+.|.. =.+|++||.+ +||+...
T Consensus 3 ~l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPD-VDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCC-HHHHHHHHHhccCCEEEE
Confidence 45566665542 2488999988 8998754
No 279
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.54 E-value=1.8e+02 Score=17.05 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=15.4
Q ss_pred EEecCCC-HHHHHHHHH-cCcEEEEE
Q 043366 96 ATVDVDN-LASQKVLQK-AGFKREGV 119 (145)
Q Consensus 96 ~~~~~~N-~~a~~~~~k-~Gf~~~~~ 119 (145)
+.....| ..|.+||.+ +||+....
T Consensus 5 v~l~v~d~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 5 VALNVDDLEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred EEEEeCCHHHHHHHHHHHhCCeEecc
Confidence 3333344 588899966 49977554
No 280
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=22.53 E-value=2.7e+02 Score=21.34 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=30.2
Q ss_pred CcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEE
Q 043366 64 ASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 64 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
.++.|.-|+|.++++ .+ |++++.+-+ .|+.-+.-.+..|.+++++.+
T Consensus 329 ~~D~Rdyg~gaqIL~--------~L-Gv~~irLLT--nnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 329 PADARDYGIGAQILV--------DL-GVRSMRLLT--NNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred CccceehhHHHHHHH--------Hc-CCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 334555555554443 34 888887655 376666677899999887654
No 281
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.52 E-value=1.6e+02 Score=17.12 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=13.0
Q ss_pred HHHHHHHHH-cCcEEEE
Q 043366 103 LASQKVLQK-AGFKREG 118 (145)
Q Consensus 103 ~~a~~~~~k-~Gf~~~~ 118 (145)
..|..||++ +||+...
T Consensus 12 ~~s~~Fy~~~lG~~~~~ 28 (122)
T cd08354 12 EAAEAFYEDVLGLELML 28 (122)
T ss_pred HHHHHHHHhccCCEEee
Confidence 488999975 8999876
No 282
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.42 E-value=1.5e+02 Score=17.54 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=12.6
Q ss_pred CceEEEEeCCEEEEEEEEe
Q 043366 28 PWFKAICLGNKPIGAILVT 46 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~ 46 (145)
....++..+++++|.+...
T Consensus 103 ~~l~Vvd~~~~~~Giit~~ 121 (126)
T cd04642 103 HRVWVVDEEGKPIGVITLT 121 (126)
T ss_pred cEEEEECCCCCEEEEEEHH
Confidence 3444555568999998754
No 283
>PRK06724 hypothetical protein; Provisional
Probab=22.20 E-value=1.8e+02 Score=17.85 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=20.3
Q ss_pred CcceEEEEecCCCHHHHHHHHH----cCcEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK----AGFKRE 117 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k----~Gf~~~ 117 (145)
++.++.+.|.-- .+|.+||++ +||+..
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEe
Confidence 677888877433 388999998 688865
No 284
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=22.17 E-value=1.7e+02 Score=16.82 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=13.6
Q ss_pred CceEEEEeCCEEEEEEEEee
Q 043366 28 PWFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 28 ~~~~~~~~~~~~vG~~~~~~ 47 (145)
...+++..+|+++|.+....
T Consensus 25 ~~~~V~d~~~~~~G~v~~~d 44 (115)
T cd04593 25 GSALVVDRDGGVVGIITLPD 44 (115)
T ss_pred cEEEEEcCCCCEEEEEEHHH
Confidence 34455555789999998543
No 285
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=22.13 E-value=2.2e+02 Score=17.98 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=20.9
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREGV 119 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~ 119 (145)
++.++.+.|. +=.++++||.. +||+....
T Consensus 9 ~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 9 GLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 5677777664 33478899976 99987553
No 286
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=22.12 E-value=4.2e+02 Score=21.23 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcE
Q 043366 77 VKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFK 115 (145)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~ 115 (145)
+.++++.+++. |++ +.+-+......+.++.+++|..
T Consensus 410 a~e~i~~Lk~~--Gi~-v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 410 AKEVIQALKRR--GIE-PVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred HHHHHHHHHHc--CCe-EEEEcCCCHHHHHHHHHHcCCc
Confidence 34455555454 665 3443444455677788888874
No 287
>PRK11478 putative lyase; Provisional
Probab=21.88 E-value=1.4e+02 Score=17.75 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=18.6
Q ss_pred CcceEEEEecCCCHHHHHHHHH-cCcEEEE
Q 043366 90 HLQRLEATVDVDNLASQKVLQK-AGFKREG 118 (145)
Q Consensus 90 ~~~~i~~~~~~~N~~a~~~~~k-~Gf~~~~ 118 (145)
++.++.+.|. +=.+|.+||.+ +||+...
T Consensus 6 ~i~hv~l~v~-D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 6 QVHHIAIIAT-DYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred eecEEEEEcC-CHHHHHHHHHHHhCCEecc
Confidence 4556666553 33478999965 8999753
No 288
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.86 E-value=1.7e+02 Score=16.76 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=12.3
Q ss_pred ceEEEEeCCEEEEEEEEee
Q 043366 29 WFKAICLGNKPIGAILVTP 47 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~~ 47 (145)
...++..+|+++|.+....
T Consensus 92 ~l~Vv~~~~~~~Gvl~~~d 110 (114)
T cd04801 92 ELAVVEDSGQVIGLITEAD 110 (114)
T ss_pred eeEEEcCCCcEEEEEeccc
Confidence 3334444589999987653
No 289
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=21.69 E-value=1.7e+02 Score=16.52 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=11.6
Q ss_pred ceEEEEeCCEEEEEEEEe
Q 043366 29 WFKAICLGNKPIGAILVT 46 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~ 46 (145)
...++..+|+++|.+...
T Consensus 74 ~lpVv~~~~~~~Giit~~ 91 (96)
T cd04614 74 QIPIINGNDKLIGLLRDH 91 (96)
T ss_pred eeeEECCCCcEEEEEEHH
Confidence 333444458999998754
No 290
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=21.65 E-value=2.7e+02 Score=18.96 Aligned_cols=55 Identities=7% Similarity=0.151 Sum_probs=37.1
Q ss_pred EEEEEEEeeCCCCCCCceeEE---EEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEE
Q 043366 39 PIGAILVTPNSGDCNKCRAIL---GYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEA 96 (145)
Q Consensus 39 ~vG~~~~~~~~~~~~~~~~~i---~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~ 96 (145)
.+|++.+....... ....-+ .+-|+|+|+|..|..+--..+.+...+++ .+...+
T Consensus 121 ~lGylml~Ed~p~S-~~pVr~~~phFpv~p~F~g~SY~~Ry~ilc~rLv~e~l--Y~aa~l 178 (196)
T PF04555_consen 121 WLGYLMLVEDCPES-RRPVRVSEPHFPVDPEFKGASYLKRYEILCERLVQERL--YTAACL 178 (196)
T ss_pred eeEEEEEEeecccc-cCCCcCCCCCCCccHHhcCCcHHHHHHHHHHHHHHhcc--cceeEE
Confidence 47777777554433 111112 46699999999999999999998887763 444444
No 291
>PRK08815 GTP cyclohydrolase; Provisional
Probab=21.55 E-value=2.9e+02 Score=20.97 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=33.4
Q ss_pred ECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEEEEEEE
Q 043366 63 VASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKREGVLR 121 (145)
Q Consensus 63 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~~~~~~ 121 (145)
..++.|.-|+|.++++. + |++++.+-++ |..-..-.+..|.++++..+
T Consensus 294 ~~~D~RdygigAQIL~d--------L-GV~kirLLTn--np~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 294 FGPDERRYGSAVAMLRG--------L-GITRVRLLTN--NPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred CCccceeeeHHHHHHHH--------c-CCCeEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 34567777777766643 3 8888887554 66566677789998887654
No 292
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=21.43 E-value=1.2e+02 Score=16.71 Aligned_cols=20 Identities=15% Similarity=-0.057 Sum_probs=16.3
Q ss_pred CHHHHHHHHH-cCcEEEEEEE
Q 043366 102 NLASQKVLQK-AGFKREGVLR 121 (145)
Q Consensus 102 N~~a~~~~~k-~Gf~~~~~~~ 121 (145)
-..+.+||.+ +||+......
T Consensus 9 ~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 9 LEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred HHHHHHHHHhccCCEEEEeec
Confidence 4588999998 9999887763
No 293
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=21.39 E-value=64 Score=17.98 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=16.7
Q ss_pred cceEEEEecCCCHHHHHHHHHcCcE
Q 043366 91 LQRLEATVDVDNLASQKVLQKAGFK 115 (145)
Q Consensus 91 ~~~i~~~~~~~N~~a~~~~~k~Gf~ 115 (145)
+..+.-.+........+|.+|+||.
T Consensus 37 i~elA~~~~vS~sti~Rf~kkLG~~ 61 (77)
T PF01418_consen 37 ISELAEKAGVSPSTIVRFCKKLGFS 61 (77)
T ss_dssp HHHHHHHCTS-HHHHHHHHHHCTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 3444444555566778999999985
No 294
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.35 E-value=1.4e+02 Score=18.23 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCcc---eEEEEecCC---CHHHHHHHHH
Q 043366 71 GIATRAVKMVTGIIFDEWPHLQ---RLEATVDVD---NLASQKVLQK 111 (145)
Q Consensus 71 G~g~~l~~~~~~~~~~~~~~~~---~i~~~~~~~---N~~a~~~~~k 111 (145)
++...++..+.+.|+++ +.+ ++.+.+..- ++.+.+|.-.
T Consensus 5 si~~~iv~~v~~~a~~~--~~~~V~~V~l~iG~ls~V~p~~L~f~f~ 49 (114)
T PRK03681 5 TLCQRALELIEQQAAKH--GAKRVTGVWLKIGAFSCVETSSLAFCFD 49 (114)
T ss_pred HHHHHHHHHHHHHHHHc--CCCeEEEEEEEEcCccccCHHHHHHHHH
Confidence 67889999999998776 544 555555443 3556665544
No 295
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=20.99 E-value=2.6e+02 Score=18.53 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHH---HHHHHcCcEEE
Q 043366 73 ATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQ---KVLQKAGFKRE 117 (145)
Q Consensus 73 g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~---~~~~k~Gf~~~ 117 (145)
+..+...+++.+.+. +.+-+.=.+...-.... +.+++.||+..
T Consensus 78 a~~~~~~~~~~a~~~--~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~ 123 (199)
T PF06414_consen 78 ASRLAEKLIEYAIEN--RYNIIFEGTLSNPSKLRKLIREAKAAGYKVE 123 (199)
T ss_dssp HHHHHHHHHHHHHHC--T--EEEE--TTSSHHHHHHHHHHHCTT-EEE
T ss_pred HHHHHHHHHHHHHHc--CCCEEEecCCCChhHHHHHHHHHHcCCceEE
Confidence 456778888888777 66655544554433333 46777999754
No 296
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=20.92 E-value=1.8e+02 Score=18.52 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=24.6
Q ss_pred cCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCC
Q 043366 65 SKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVD 101 (145)
Q Consensus 65 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 101 (145)
.-|+|+||..+.+..+-+.+.+.- .-..+.+-..++
T Consensus 14 q~y~GkGYS~~FveN~d~I~~rL~-~ge~i~lV~g~D 49 (135)
T COG3543 14 QGYQGKGYSPAFVENYDAIAERLK-AGEDIKLVDGPD 49 (135)
T ss_pred eecccccCCHHHHHHHHHHHHHhh-cCCCeEEEeccc
Confidence 569999999999888888776543 334455544443
No 297
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.87 E-value=1e+02 Score=18.06 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=19.1
Q ss_pred ceEEEEecCCCHHHHHHHHH-cCcEEEEEE
Q 043366 92 QRLEATVDVDNLASQKVLQK-AGFKREGVL 120 (145)
Q Consensus 92 ~~i~~~~~~~N~~a~~~~~k-~Gf~~~~~~ 120 (145)
.++.+.|. +=.++.+||.+ +||+.....
T Consensus 2 ~hv~l~v~-d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 2 DHIGIAVP-DLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred cEEEEEeC-CHHHHHHHHHHhhCCCCcccc
Confidence 35566563 23478899988 999986543
No 298
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=20.72 E-value=2.1e+02 Score=21.69 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=44.2
Q ss_pred eEEEEEECcCccCCCHHHHHHHHHHHHHhhcCCCcceEEEEecCCCHHHHHHHHHcCcEE
Q 043366 57 AILGYVVASKYWGKGIATRAVKMVTGIIFDEWPHLQRLEATVDVDNLASQKVLQKAGFKR 116 (145)
Q Consensus 57 ~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~~~k~Gf~~ 116 (145)
+.+|+-|.++|-|.|.-......+++..-+- ...+-+.+...|.-...+..++|=..
T Consensus 81 Glmgv~vpeeyGGsG~df~~~~~v~EEisk~---d~sv~~~v~v~ntL~~~~i~~fGtee 137 (398)
T KOG0139|consen 81 GLMGVEVPEEYGGSGLDFFAAAIVIEEISKV---DASVGVIVDVQNTLYLPLIIQFGTEE 137 (398)
T ss_pred CcceeecChhhCCCchhHHHHHHHHHHHhcc---CccceeEEEecccccchHHHHhCcHH
Confidence 4556778999999999988877777776443 33788888999988888888888543
No 299
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=20.72 E-value=2.8e+02 Score=18.80 Aligned_cols=78 Identities=6% Similarity=0.034 Sum_probs=42.4
Q ss_pred hHHHHHHhhhc---CCCCceEEEEeCCEEEEEEEEeeCCCCCCCceeEE-EEE-ECcCccCCCHHHHHHHHHHHHHhhcC
Q 043366 14 DGINFFKNKVI---NNHPWFKAICLGNKPIGAILVTPNSGDCNKCRAIL-GYV-VASKYWGKGIATRAVKMVTGIIFDEW 88 (145)
Q Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~i-~~~-v~~~~rg~G~g~~l~~~~~~~~~~~~ 88 (145)
....|++.... .+...++.+..+|++.|++.+.............+ .++ .+++ ....+.++...+.
T Consensus 8 R~~~~w~~~~~~~~~~~~~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~---------A~~aLl~fl~~h~ 78 (218)
T PF13530_consen 8 RDEAWWRRLLREREKDRGYAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRELVALDPE---------AYRALLAFLASHR 78 (218)
T ss_dssp --HHHHHHHCHTTCCGSEEEEEEECTSEEEEEEEEEEET-SSSTTEEEEEEEEESSHH---------HHHHHHHHHHTCC
T ss_pred CCHHHHHHHhhcccCCceEEEEECCCCCeeEEEEEEEcccCCCCceEEEEEEEeCCHH---------HHHHHHHHHHhhh
Confidence 34455555552 22344555556999999999988773221233666 443 3342 2344555544442
Q ss_pred CCcceEEEEecC
Q 043366 89 PHLQRLEATVDV 100 (145)
Q Consensus 89 ~~~~~i~~~~~~ 100 (145)
..+.++.+...+
T Consensus 79 ~~~~~v~~~~p~ 90 (218)
T PF13530_consen 79 DQVDEVEWNRPP 90 (218)
T ss_dssp TTESEEEEEEST
T ss_pred CcceEEEEEcCC
Confidence 267778776543
No 300
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=20.40 E-value=1.9e+02 Score=16.61 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=12.4
Q ss_pred eEEEEeCCEEEEEEEEe
Q 043366 30 FKAICLGNKPIGAILVT 46 (145)
Q Consensus 30 ~~~~~~~~~~vG~~~~~ 46 (145)
.+.+..+|+++|.+...
T Consensus 84 ~~pVv~~~~~~Gvvt~~ 100 (105)
T cd04591 84 HLLVVDEGRLVGIITRK 100 (105)
T ss_pred EEEEEECCeEEEEEEhh
Confidence 34444789999998765
No 301
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=20.29 E-value=1.9e+02 Score=16.60 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=11.8
Q ss_pred ceEEEEeCCEEEEEEEEe
Q 043366 29 WFKAICLGNKPIGAILVT 46 (145)
Q Consensus 29 ~~~~~~~~~~~vG~~~~~ 46 (145)
...++..+|.++|.+...
T Consensus 93 ~~pVvd~~~~~~Gvit~~ 110 (115)
T cd04620 93 HLPVLDDQGQLIGLVTAE 110 (115)
T ss_pred eEEEEcCCCCEEEEEEhH
Confidence 344444578999988653
Done!