BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043369
(526 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
Length = 680
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 105/457 (22%), Positives = 172/457 (37%), Gaps = 55/457 (12%)
Query: 89 EFDPITRKVRPLTI---QTDTWCSSGALLANGVLVQTGGYRLGERVVRYLKPCSDCDW-- 143
+DP T V T+ + D +C ++ NG +V TGG + L S W
Sbjct: 247 SWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIP 303
Query: 144 EEDHQNGLISPRWYASNQILPNGKIIVVGGRFQF-TYEFIPRTSDSDRKILYQLPFLKET 202
D Q R Y S+ + +G++ +GG + +E K LP K
Sbjct: 304 GPDMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 359
Query: 203 MHSPKIPNNLYPFLHLSTDGNLFIFANDRAILLDYVNNRVMKNYPVMPGGISRNYPSTGS 262
LY +D + ++F + + + M Y G ++ S
Sbjct: 360 PMLTADKQGLY-----RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 414
Query: 263 SVLLPVNLSSINVHINNNNKPVVHSQVLICGGTLPDSNENAAEAQIFLPAAKSCGRLTIT 322
+ + + N + + V ++L GG+ PD ++ A + G T
Sbjct: 415 NRGVAPDAMCGNAVMYD----AVKGKILTFGGS-PDYQDSDATTNAHIITLGEPG----T 465
Query: 323 AQNPKWEMEEMPLNRVMGDMILLPTGDVLIINGAAKGTAGWGAAREPVLNPVIYCPKINR 382
+ N + + R ++LP G I G +G PV P IY P+ +
Sbjct: 466 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF--EDSTPVFTPEIYVPEQDT 523
Query: 383 FRILSPSLIPRLYHSTAHLLSDGRVLVGGSN--PNVNYNFSALFPTELSLQAFYPPY-FN 439
F +P+ I R+YHS + LL DGRV GG + N Q F P Y +N
Sbjct: 524 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-------HFDAQIFTPNYLYN 576
Query: 440 LMSN-RSRPSIS-----TVKPGAFLKLKYTENFLLGFKLRSG--------DLGEIFVTMV 485
N +RP I+ +VK G + + + +R G D I +T+
Sbjct: 577 SNGNLATRPKITRTSTQSVKVGGRITISTDSSITKASLIRYGTATHTVNTDQRRIPLTLT 636
Query: 486 APSFTTHSFAM-NQRLLVLELHGALFLVND-GVPSKA 520
++SF + + + L + LF++N GVPS A
Sbjct: 637 NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVA 673
>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1
Length = 680
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 105/457 (22%), Positives = 172/457 (37%), Gaps = 55/457 (12%)
Query: 89 EFDPITRKVRPLTI---QTDTWCSSGALLANGVLVQTGGYRLGERVVRYLKPCSDCDW-- 143
+DP T V T+ + D +C ++ NG +V TGG + L S W
Sbjct: 247 SWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG---NDAKKTSLYDSSSDSWIP 303
Query: 144 EEDHQNGLISPRWYASNQILPNGKIIVVGGRFQF-TYEFIPRTSDSDRKILYQLPFLKET 202
D Q R Y S+ + +G++ +GG + +E K LP K
Sbjct: 304 GPDMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 359
Query: 203 MHSPKIPNNLYPFLHLSTDGNLFIFANDRAILLDYVNNRVMKNYPVMPGGISRNYPSTGS 262
LY +D + ++F + + + M Y G ++ S
Sbjct: 360 PMLTADKQGLY-----RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 414
Query: 263 SVLLPVNLSSINVHINNNNKPVVHSQVLICGGTLPDSNENAAEAQIFLPAAKSCGRLTIT 322
+ + + N + + V ++L GG+ PD ++ A + G T
Sbjct: 415 NRGVAPDAMCGNAVMYD----AVKGKILTFGGS-PDYQDSDATTNAHIITLGEPG----T 465
Query: 323 AQNPKWEMEEMPLNRVMGDMILLPTGDVLIINGAAKGTAGWGAAREPVLNPVIYCPKINR 382
+ N + + R ++LP G I G +G PV P IY P+ +
Sbjct: 466 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF--EDSTPVFTPEIYVPEQDT 523
Query: 383 FRILSPSLIPRLYHSTAHLLSDGRVLVGGSN--PNVNYNFSALFPTELSLQAFYPPY-FN 439
F +P+ I R+YHS + LL DGRV GG + N Q F P Y +N
Sbjct: 524 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-------HFDAQIFTPNYLYN 576
Query: 440 LMSN-RSRPSIS-----TVKPGAFLKLKYTENFLLGFKLRSG--------DLGEIFVTMV 485
N +RP I+ +VK G + + + +R G D I +T+
Sbjct: 577 SNGNLATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQRRIPLTLT 636
Query: 486 APSFTTHSFAM-NQRLLVLELHGALFLVND-GVPSKA 520
++SF + + + L + LF++N GVPS A
Sbjct: 637 NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVA 673
>sp|Q10579|SPE26_CAEEL Spermatocyte protein spe-26 OS=Caenorhabditis elegans GN=spe-26
PE=1 SV=1
Length = 570
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 111 GALLANGVLVQTGGYRLGERVVRYLKPCSDCDWEEDHQNGLISPRWYASN-QILPNGKII 169
G+ + +G+L GG G+R S W+ D N ++ PR Y SN ++ +G+I
Sbjct: 285 GSAIVDGILYLFGG-STGQRTRCETWKLSTETWQWDRCNNMMEPRNYISNSSVVYDGRIY 343
Query: 170 VVGGRFQFTYEFIPRTSDSDR 190
V GG+ + I RT+ R
Sbjct: 344 VFGGQ---NFREITRTAVRSR 361
>sp|Q9VRH6|GUF1_DROME Translation factor waclaw, mitochondrial OS=Drosophila melanogaster
GN=waw PE=3 SV=2
Length = 696
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 22/213 (10%)
Query: 234 LLDYVNNRVMKNYPVMPGGISRNYPSTGSSVLLPV-----NLSSINVHINNNNKPVVHSQ 288
L+ +N ++ +N + + Y SVL P ++S+ V + N + +S+
Sbjct: 303 LIYVLNGKLEQNQDIQSLATKKVYSVKSISVLRPAECPVPDVSAGQVGLIACN--MRNSK 360
Query: 289 VLICGGTLPDSNENAAEAQIFLPAAKSCGRLTITAQNPKWEMEEMPLNRVMGDMILLPTG 348
I G T+ N+ A A + P L P + + + L + M+L +
Sbjct: 361 ESIVGDTIHLKNQAVAAAGSYRPQQP----LVFAGVFPADQSKHVALRSAIDKMVLNDSA 416
Query: 349 DVLIINGAAKGTAGWGAAREPVLNPVIYCPKINRFR-----ILSPSLIPRLYHSTAHLLS 403
+ I+ + GW +L+ ++C ++ + I +PS+ RL +LS
Sbjct: 417 VTVKIDSSPALGQGWRLGFLGLLHMEVFCQRLEQEHGAEPIITAPSVTYRL------VLS 470
Query: 404 DGRVLVGGSNPNVNYNFSALFPTELSLQAFYPP 436
+ +++ ++ + +ALFP S++ +Y P
Sbjct: 471 NPKMIKQQGRDTMDISNAALFPEPHSIKEYYEP 503
>sp|Q9I9K0|FOG1_XENLA Zinc finger protein ZFPM1 (Fragment) OS=Xenopus laevis GN=zfpm1
PE=1 SV=1
Length = 1061
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 11/153 (7%)
Query: 213 YPFLHLSTDGNLFIFANDRAILLDYVNNRVMKNYPVMPGGISRNYPSTGSSVLLPVNLSS 272
Y F H +T + + A + + V++R+ + V P G S GS+V
Sbjct: 465 YVFGHEATAAIVPQASEILAKMSELVHSRLKQGQAVTPAGFS------GSAVPKGATCFE 518
Query: 273 INVHINNNNKPVVHSQVLICGGTLPDSNENAAEAQIFLPAAKSCGRLTITAQNPKWEMEE 332
+ NN N VH ++ G + D N ++A LPA R + + E E
Sbjct: 519 CEITFNNINNYYVHKRLYCSGRHVSDENSSSARKVKALPA-----RTALASGFSSTEQEA 573
Query: 333 MPLNRVMGDMILLPTGDVLIINGAAKGTAGWGA 365
P G+ P V + + G G+
Sbjct: 574 SPPQEDAGEESSAPVVAVKLEENSGMDCEGAGS 606
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,044,982
Number of Sequences: 539616
Number of extensions: 9130505
Number of successful extensions: 17619
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17611
Number of HSP's gapped (non-prelim): 12
length of query: 526
length of database: 191,569,459
effective HSP length: 122
effective length of query: 404
effective length of database: 125,736,307
effective search space: 50797468028
effective search space used: 50797468028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)