BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043370
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6A|A Chain A, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|B Chain B, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|C Chain C, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|D Chain D, Structure Of The C-Terminal Domain Of Bcar3
Length = 333
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDV 138
+SS EL TL G Q+ ++++ ++ +G+ ++ G L+D T + V
Sbjct: 79 VSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGC---TGTLEDRAATLSKIIQVAV 135
Query: 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG-LKEKGMEFFD 197
L SM Y F L + +E + + T+ +L + + L EK ++ F
Sbjct: 136 ELKDSMGDLYSFSA-------LMKALEMPQITRLEKTWTALRHQYTQTAILYEKQLKPFS 188
Query: 198 LMVKKYRRKPRLEHYTCV 215
++ + R TCV
Sbjct: 189 KLLHEGRES------TCV 200
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGR 262
YR++ ++ TC++D+L G E A+ +R+ ++ + A KS + +
Sbjct: 40 YRKQVVIDGETCLLDILDTAG--QEEASAMRDQYMRTGEGFL--CVFAINNTKSFEDIHQ 95
Query: 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVH 322
E+I V D P VL+ N A R E R+A +++ + G+ ++E +
Sbjct: 96 YREQIKRVKDSDDVPMVLVGNKCDLAAR---TVESRQA---QDLARSYGIPYIETSAKTR 149
Query: 323 Q 323
Q
Sbjct: 150 Q 150
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGR 262
YR++ ++ TC++D+L G L+E +A+ R+ ++ + A KS + +
Sbjct: 40 YRKQVVIDGETCLLDILDTAG-LEEYSAM-RDQYMRTGEGFL--CVFAINNTKSFEDIHQ 95
Query: 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVH 322
E+I V D P VL+ N A R E R+A +++ + G+ ++E +
Sbjct: 96 YREQIKRVKDSDDVPMVLVGNKCDLAAR---TVESRQA---QDLARSYGIPYIETSAKTR 149
Query: 323 Q 323
Q
Sbjct: 150 Q 150
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGR 262
YR++ ++ TC++D+L G L+E +A+ R+ ++ + A KS + +
Sbjct: 45 YRKQVVIDGETCLLDILDTAG-LEEYSAM-RDQYMRTGEGFL--CVFAINNTKSFEDIHQ 100
Query: 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVH 322
E+I V D P VL+ N A R E R+A +++ + G+ ++E +
Sbjct: 101 YREQIKRVKDSDDVPMVLVGNKCDLAAR---TVESRQA---QDLARSYGIPYIETSAKTR 154
Query: 323 Q 323
Q
Sbjct: 155 Q 155
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 194 EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKT 253
EF + YR++ ++ TC++D+L G E + +R+ ++ + A
Sbjct: 31 EFDPTIEDSYRKQVVIDGETCLLDILDTAG--QEEYSAMRDQYMRTGEGFL--CVFAINN 86
Query: 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVS 313
KS + + E+I V D P VL+ N A R E R+A +++ + G+
Sbjct: 87 TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR---TVESRQA---QDLARSYGIP 140
Query: 314 WLEIKNQVHQ 323
++E + Q
Sbjct: 141 YIETSAKTRQ 150
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGR 262
YR++ ++ TC++D+L G E + +R+ ++ + A KS + +
Sbjct: 40 YRKQVVIDGETCLLDILDTAG--QEEYSAMRDQYMRTGEGFL--CVFAINNTKSFEDIHQ 95
Query: 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVH 322
E+I V D P VL+ N A R E R+A +++ + G+ ++E +
Sbjct: 96 YREQIKRVKDSDDVPMVLVGNKSDLAAR---TVESRQA---QDLARSYGIPYIETSAKTR 149
Query: 323 Q 323
Q
Sbjct: 150 Q 150
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGR 262
YR++ ++ TC++D+L G E + +R+ ++ + A KS + +
Sbjct: 40 YRKQVVIDGETCLLDILDTAG--QEEYSAMRDQYMRTGEGFL--CVFAINNTKSFEDIHQ 95
Query: 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVH 322
E+I V D P VL+ N A R E R+A +++ + G+ ++E +
Sbjct: 96 YREQIKRVKDSDDVPMVLVGNKSDLAAR---TVESRQA---QDLARSYGIPYIETSAKTR 149
Query: 323 Q 323
Q
Sbjct: 150 Q 150
>pdb|4EBA|A Chain A, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|B Chain B, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|C Chain C, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|D Chain D, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|E Chain E, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|F Chain F, Crystal Structure Of The Rna14-Rna15 Complex
Length = 645
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 246 TLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
+L + +D+ G++ +++ P D YV L H S K+W+ V E + + +R
Sbjct: 4 SLRPTSRVRDESDVIGKL-NDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR 61
>pdb|4E6H|A Chain A, Crystal Structure Of The Hat Domain Of K. Lactis Rna14
Length = 679
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 246 TLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
+L + +D+ G++ +++ P D YV L H S K+W+ V E + + +R
Sbjct: 38 SLRPTSRVRDESDVIGKL-NDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR 95
>pdb|4E85|A Chain A, Crystal Structure Of Hat Domain Of Rna14
pdb|4E85|B Chain B, Crystal Structure Of Hat Domain Of Rna14
Length = 678
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 246 TLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
+L + +D+ G++ +++ P D YV L H S K+W+ V E + + +R
Sbjct: 37 SLRPTSRVRDESDVIGKL-NDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,661,112
Number of Sequences: 62578
Number of extensions: 496513
Number of successful extensions: 1121
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 29
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)