BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043370
(430 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 278/451 (61%), Positives = 341/451 (75%), Gaps = 27/451 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G ELDLV SSLAHMYM++G L +GE VIR MP+RN++AW TLI G AQNG E VL Y
Sbjct: 206 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 265
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M++ G RP+KITFV+V+SSCS+LA GQGQQIHAE +K GAS V V+SSLISMYS+C
Sbjct: 266 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 325
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM-EQKEFEANDVTFVSL 179
GCL D+ K F E E D V+WSSMI+AYGFHG+G+EAI LF M EQ E N+V F++L
Sbjct: 326 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 385
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSH GLK+KG+E FD+MV+KY KP L+HYTCVVDLLGR G LD+A A+IR+MP+K
Sbjct: 386 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 445
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
+ +IWKTLLSAC HK+ +MA R+ +EIL ++P D+A YVLL+N+HASAKRW+ VSE R+
Sbjct: 446 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 505
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
+MR++NVKKE G+SW E K +VHQF MGD+S +S EI YL+ELT EMKL+GY PDT +
Sbjct: 506 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 565
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP--------------------FKY 399
+HDMD EEKE +L HSEKLA+AFA +++LP FKY
Sbjct: 566 VLHDMDEEEKESDLVQHSEKLAVAFA------LMILPEGAPIRIIKNLRVCSDCHVAFKY 619
Query: 400 ISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
IS IKNREI +RD SRFHHF NGKCSCGDYW
Sbjct: 620 ISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 2/256 (0%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
+ ++ + L + Y+++G LV KV MP R + W +IAG Q E+ L + M
Sbjct: 109 NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 168
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
+GF PD+ T SV S + L ++ GQQIH +K G LD+ V SSL MY R G L
Sbjct: 169 GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 228
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
D ++V W+++I +G E + L++ M+ N +TFV++L +CS
Sbjct: 229 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 288
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
++ +G + + K + + ++ + +CG L +AA + ++W
Sbjct: 289 DLAIRGQGQQIHAEAI-KIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE-DEDEVMW 346
Query: 245 KTLLSACKTHKSTDMA 260
+++SA H D A
Sbjct: 347 SSMISAYGFHGQGDEA 362
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 35/261 (13%)
Query: 75 FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS---------------- 118
F I SC+ +L G+Q+H +V +G S D + + L+SMYS
Sbjct: 47 FTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMR 106
Query: 119 ---------------RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQ 163
R G L ++ K F E + W++MIA EE ++LF +
Sbjct: 107 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 166
Query: 164 MEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223
M F ++ T S+ + G + + KY + L + + + R G
Sbjct: 167 MHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTI-KYGLELDLVVNSSLAHMYMRNG 225
Query: 224 YLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAE--EILGVNPQDAAPYVLL 281
L + +IR+MPV+ N + W TL+ + + + + +I G P +L
Sbjct: 226 KLQDGEIVIRSMPVR-NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVL 284
Query: 282 SNIHASAKRWQGVSEFREAMR 302
S+ A R QG EA++
Sbjct: 285 SSCSDLAIRGQGQQIHAEAIK 305
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 359 bits (921), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 180/445 (40%), Positives = 274/445 (61%), Gaps = 15/445 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF + +SL H+Y G + KV MP ++++AW ++I G A+NG E+ L Y
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALY 210
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G +PD T VS++S+C+++ L G+++H ++K G + ++ + L+ +Y+RC
Sbjct: 211 TEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC 270
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSL 179
G ++++ F E + V W+S+I +G G+EAI LF+ ME E ++TFV +
Sbjct: 271 GRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGI 330
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
LYACSHCG+ ++G E+F M ++Y+ +PR+EH+ C+VDLL R G + +A I++MP++
Sbjct: 331 LYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQP 390
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
N +IW+TLL AC H +D+A +IL + P + YVLLSN++AS +RW V + R+
Sbjct: 391 NVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRK 450
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
M VKK PG S +E+ N+VH+F MGDKSHP+S I L+E+T ++ GYVP
Sbjct: 451 QMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISN 510
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAF---AEHTRGLIVM-----------LPFKYISEIKN 405
D++ EEKE + +HSEK+AIAF + R I + L K +S++ N
Sbjct: 511 VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYN 570
Query: 406 REIIVRDASRFHHFRNGKCSCGDYW 430
REI+VRD SRFHHF+NG CSC DYW
Sbjct: 571 REIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 4/217 (1%)
Query: 33 PIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF-RPDKITFVSVISSCSELATLGQG 91
PI NV W TLI G A+ G + Y MR+ G PD T+ +I + + +A + G
Sbjct: 82 PI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLG 140
Query: 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH 151
+ IH+ V+++G + V +SL+ +Y+ CG + + K F + D+V W+S+I + +
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200
Query: 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEH 211
GK EEA+ L+ +M K + + T VSLL AC+ G G M+K + L
Sbjct: 201 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR-NLHS 259
Query: 212 YTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
++DL RCG ++EA L M V N++ W +L+
Sbjct: 260 SNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 358 bits (920), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 179/449 (39%), Positives = 267/449 (59%), Gaps = 24/449 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + D+ GSSL MY KS + + E+V + R+ I+W +L+AG QNG + L +
Sbjct: 272 GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLF 331
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M +P + F SVI +C+ LATL G+Q+H V++ G ++ + S+L+ MYS+C
Sbjct: 332 RQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKC 391
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + + K F D V W+++I + HG G EA++LFE+M+++ + N V FV++L
Sbjct: 392 GNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVL 451
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL ++ +F+ M K Y LEHY V DLLGR G L+EA I M V+
Sbjct: 452 TACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPT 511
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+W TLLS+C HK+ ++A ++AE+I V+ ++ YVL+ N++AS RW+ +++ R
Sbjct: 512 GSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLR 571
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MR++ ++K+P SW+E+KN+ H F GD+SHP +I+ +L+ + +M+ GYV DT
Sbjct: 572 MRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGV 631
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYIS 401
+HD+D E K L HSE+LA+AF G+I P K+IS
Sbjct: 632 LHDVDEEHKRELLFGHSERLAVAF-----GIINTEPGTTIRVTKNIRICTDCHVAIKFIS 686
Query: 402 EIKNREIIVRDASRFHHFRNGKCSCGDYW 430
+I REIIVRD SRFHHF G CSCGDYW
Sbjct: 687 KITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 129/258 (50%), Gaps = 4/258 (1%)
Query: 27 KVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86
+V +MP ++V+++ T+IAG AQ+G+ ED L M +PD T SV+ SE
Sbjct: 197 RVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYV 256
Query: 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIA 146
+ +G++IH V++ G DV + SSL+ MY++ ++DS + F D + W+S++A
Sbjct: 257 DVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316
Query: 147 AYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK 206
Y +G+ EA+ LF QM + + V F S++ AC+H G + +++
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFG 375
Query: 207 PRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEE 266
+ + +VD+ +CG + A + M V + + W ++ H A + EE
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGHGHEAVSLFEE 434
Query: 267 I--LGVNPQDAAPYVLLS 282
+ GV P A +L+
Sbjct: 435 MKRQGVKPNQVAFVAVLT 452
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 88/396 (22%), Positives = 144/396 (36%), Gaps = 92/396 (23%)
Query: 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHA 96
V+AW ++I L L + MR G PD F SV+ SC+ + L G+ +H
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129
Query: 97 EVVKAGASLDVGVISSLISMYSRC-------------------------------GCL-- 123
+V+ G D+ ++L++MY++ C+
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189
Query: 124 --DDSVKTFLEC-EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
DSV+ E DVV ++++IA Y G E+A+ + +M + + + T S+L
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Query: 181 YACSHCGLKEKGMEFFDLMVKK---------------YRRKPRLE--------------- 210
S KG E +++K Y + R+E
Sbjct: 250 PIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309
Query: 211 HYTCVVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSAC----KTHKSTDMAGRI 263
+ +V + G +EA L R M VK A+ + +++ AC H + G +
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369
Query: 264 AEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQ 323
G N A+ V + + + + R+ NV E VSW I
Sbjct: 370 LRGGFGSNIFIASALVDMYS------KCGNIKAARKIFDRMNVLDE--VSWTAI------ 415
Query: 324 FTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
MG H E E EMK +G P+ A
Sbjct: 416 -IMGHALHGHGHEAVSLFE----EMKRQGVKPNQVA 446
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 355 bits (912), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 283/445 (63%), Gaps = 16/445 (3%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
+E G++L Y+K G + E KV + ++++AW ++AG AQ G E + +
Sbjct: 424 YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG 483
Query: 62 LMRMVGFRPDKITFVSVISSCSEL-ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ G +P++ TF S+++ C+ A++GQG+Q H +K+ + V S+L++MY++
Sbjct: 484 ELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 543
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++ + + F D+V W+SMI+ Y HG+ +A+++F++M++++ + + VTF+ +
Sbjct: 544 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 603
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
AC+H GL E+G ++FD+MV+ + P EH +C+VDL R G L++A +I NMP A
Sbjct: 604 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 663
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+ IW+T+L+AC+ HK T++ AE+I+ + P+D+A YVLLSN++A + WQ ++ R+
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M ERNVKKEPG SW+E+KN+ + F GD+SHP +I + LE+L++ +K GY PDT
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 783
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA-----EHTRGLIVM---------LPFKYISEIKNR 406
+ D+D E KE L HSE+LAIAF + + LI+ L K I++I+ R
Sbjct: 784 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 843
Query: 407 EIIVRDASRFHHF-RNGKCSCGDYW 430
EI+VRD++RFHHF +G CSCGD+W
Sbjct: 844 EIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 144/297 (48%), Gaps = 13/297 (4%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF D+ G+SL YMK + +G KV M RNV+ W TLI+G A+N + ++VL +
Sbjct: 123 GFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLF 182
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M+ G +P+ TF + + +E G+G Q+H VVK G + V +SLI++Y +C
Sbjct: 183 MRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKC 242
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + + F + E VV W+SMI+ Y +G EA+ +F M ++ +F S++
Sbjct: 243 GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVI 302
Query: 181 YACSHCGLKE-KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
C++ LKE + E V KY T ++ +C + +A L + +
Sbjct: 303 KLCAN--LKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVG 360
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEI--LGVNPQD--------AAPYVLLSNIHA 286
N + W ++S + + A + E+ GV P + A P + S +HA
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHA 417
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 131/260 (50%), Gaps = 16/260 (6%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIR-LMPIRNVIAWITLIAGKAQNGLAEDVLDQ 59
GF D ++L Y K ++++ ++ + + + NV++W +I+G QN E+ +D
Sbjct: 325 GFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDL 384
Query: 60 YNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
++ M+ G RP++ T+ ++++ ++ ++HA+VVK V ++L+ Y +
Sbjct: 385 FSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVK 440
Query: 120 CGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179
G ++++ K F + D+V WS+M+A Y G+ E AI +F ++ + + N+ TF S+
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500
Query: 180 LYACSHCGLK-EKGMEFFDLMVKKYRRKPRLEHYTCV----VDLLGRCGYLDEAAALIRN 234
L C+ +G +F + K RL+ CV + + + G ++ A + +
Sbjct: 501 LNVCAATNASMGQGKQFHGFAI-----KSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 555
Query: 235 MPVKANAIIWKTLLSACKTH 254
K + + W +++S H
Sbjct: 556 QREK-DLVSWNSMISGYAQH 574
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 109/218 (50%), Gaps = 2/218 (0%)
Query: 33 PIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQ 92
P R+ ++I+L+ G +++G ++ + + +G D F SV+ + L G+
Sbjct: 54 PGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGR 113
Query: 93 QIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHG 152
Q+H + +K G DV V +SL+ Y + D K F E + +VV W+++I+ Y +
Sbjct: 114 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNS 173
Query: 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY 212
+E + LF +M+ + + N TF + L + G+ +G++ ++VK K +
Sbjct: 174 MNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT-IPVS 232
Query: 213 TCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
+++L +CG + +A L VK+ + W +++S
Sbjct: 233 NSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSMISG 269
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/447 (39%), Positives = 272/447 (60%), Gaps = 17/447 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF LD ++L Y K G + +V MP ++++AW +L++G QNGLA++ + +
Sbjct: 137 GFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVF 196
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
MR GF PD TFVS++S+C++ + G +H ++ G L+V + ++LI++YSRC
Sbjct: 197 YQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRC 256
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE-ANDVTFVSL 179
G + + + F + + ++V W++MI+AYG HG G++A+ LF +ME N+VTFV++
Sbjct: 257 GDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAV 316
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
L AC+H GL E+G + M K YR P +EH+ C+VD+LGR G+LDEA I +
Sbjct: 317 LSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATG 376
Query: 240 NAI---IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296
A +W +L ACK H++ D+ IA+ ++ + P + +V+LSNI+A + + VS
Sbjct: 377 KATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSH 436
Query: 297 FREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPD 356
R+ M N++K+ G S +E++N+ + F+MGD+SH + EI YLE L S K GY P
Sbjct: 437 IRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPV 496
Query: 357 TGADMHDMDSEEKEYNLKHHSEKLAIAFA-EHTRGLIVML------------PFKYISEI 403
+ MH ++ EEKE+ L++HSEKLA+AF T + + + FKYIS +
Sbjct: 497 SEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDVAITIVKNLRICEDCHSAFKYISIV 556
Query: 404 KNREIIVRDASRFHHFRNGKCSCGDYW 430
NR+I VRD RFHHF+NG CSC DYW
Sbjct: 557 SNRQITVRDKLRFHHFQNGSCSCLDYW 583
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 22/254 (8%)
Query: 32 MPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91
+P+ + + ++I ++ L + Y M P TF SVI SC++L+ L G
Sbjct: 67 VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIG 126
Query: 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH 151
+ +H V +G LD V ++L++ YS+CG ++ + + F +V W+S+++ + +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQN 186
Query: 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG--------MEFFDLMVKKY 203
G +EAI +F QM + FE + TFVSLL AC+ G G E DL VK
Sbjct: 187 GLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKL- 245
Query: 204 RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRI 263
T +++L RCG + +A + M + N W ++SA TH G+
Sbjct: 246 --------GTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTHGY----GQQ 292
Query: 264 AEEILGVNPQDAAP 277
A E+ D P
Sbjct: 293 AVELFNKMEDDCGP 306
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 81/206 (39%), Gaps = 26/206 (12%)
Query: 90 QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYG 149
Q QQ+HA ++ G +++ LI++ + + FL D L++S+I +
Sbjct: 24 QLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTS 83
Query: 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS-----------HCGLKEKGMEFFDL 198
+ + +M ++ TF S++ +C+ HC G D
Sbjct: 84 KLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG-LDT 142
Query: 199 MVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTD 258
V+ +V +CG ++ A + MP K+ + W +L+S + + D
Sbjct: 143 YVQ-----------AALVTFYSKCGDMEGARQVFDRMPEKS-IVAWNSLVSGFEQNGLAD 190
Query: 259 MAGRIAEEIL--GVNPQDAAPYVLLS 282
A ++ ++ G P A LLS
Sbjct: 191 EAIQVFYQMRESGFEPDSATFVSLLS 216
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/444 (40%), Positives = 274/444 (61%), Gaps = 15/444 (3%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
F D+ G+++ MY K G + V +P +VI+W T+I+G AQNG A + ++ YN
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439
Query: 62 LMRMVG-FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+M G ++ T+VSV+ +CS+ L QG ++H ++K G LDV V++SL MY +C
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKC 499
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G L+D++ F + + V W+++IA +GFHG GE+A+ LF++M + + + +TFV+LL
Sbjct: 500 GRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL 559
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL ++G F++M Y P L+HY C+VD+ GR G L+ A I++M ++ +
Sbjct: 560 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 619
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A IW LLSAC+ H + D+ +E + V P+ +VLLSN++ASA +W+GV E R
Sbjct: 620 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSI 679
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
+ ++K PG S +E+ N+V F G+++HP E+ L L +++K+ GYVPD
Sbjct: 680 AHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFV 739
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAE-HTRGLIVMLPF-------------KYISEIKNR 406
+ D++ +EKE+ L HSE+LAIAFA T + F K+IS+I R
Sbjct: 740 LQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITER 799
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRD++RFHHF+NG CSCGDYW
Sbjct: 800 EIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 15/255 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF D+ +SL H+Y + ++ + MP+R++ +W +I+G Q+G A++ L
Sbjct: 180 GFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLS 239
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
N +R + D +T VS++S+C+E +G IH+ +K G ++ V + LI +Y+
Sbjct: 240 NGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEF 295
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G L D K F D++ W+S+I AY + + AI+LF++M + + +T +SL
Sbjct: 296 GRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLA 355
Query: 181 YACSHCGLKE--KGMEFFDLMVKKYRRKPRLEHYT---CVVDLLGRCGYLDEAAALIRNM 235
S G + ++ F L R+ LE T VV + + G +D A A+ +
Sbjct: 356 SILSQLGDIRACRSVQGFTL-----RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 236 PVKANAIIWKTLLSA 250
P + I W T++S
Sbjct: 411 P-NTDVISWNTIISG 424
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 10/247 (4%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL-M 63
++ + L ++Y G++ + R+V AW +I+G + G + +V+ ++L M
Sbjct: 85 NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM 144
Query: 64 RMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123
G PD TF SV+ +C T+ G +IH +K G DV V +SLI +YSR +
Sbjct: 145 LSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAV 201
Query: 124 DDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183
++ F E D+ W++MI+ Y G +EA+ L + + VT VSLL AC
Sbjct: 202 GNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSAC 257
Query: 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAII 243
+ G +G+ + K+ + L ++DL G L + + M V+ + I
Sbjct: 258 TEAGDFNRGVTIHSYSI-KHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLIS 315
Query: 244 WKTLLSA 250
W +++ A
Sbjct: 316 WNSIIKA 322
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G LD+ +SLA MY K G L + + +P N + W TLIA +G E + +
Sbjct: 481 GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLF 540
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL------I 114
M G +PD ITFV+++S+CS + +GQ E+++ D G+ SL +
Sbjct: 541 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCF-EMMQT----DYGITPSLKHYGCMV 595
Query: 115 SMYSRCGCLDDSVKTFLECEYS-DVVLWSSMIAAYGFHGK 153
MY R G L+ ++K D +W ++++A HG
Sbjct: 596 DMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGN 635
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMI 145
L + +HA +V + +V + + L+++Y G + + TF + DV W+ MI
Sbjct: 65 TNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMI 124
Query: 146 AAYGFHGKGEEAINLFEQ-MEQKEFEANDVTFVSLLYAC 183
+ YG G E I F M + TF S+L AC
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC 163
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/429 (40%), Positives = 267/429 (62%), Gaps = 14/429 (3%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75
Y + G + E + + MP R+ ++W +IAG +Q+G + + L + M G R ++ +F
Sbjct: 353 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 412
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135
S +S+C+++ L G+Q+H +VK G V ++L+ MY +CG ++++ F E
Sbjct: 413 SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 472
Query: 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195
D+V W++MIA Y HG GE A+ FE M+++ + +D T V++L ACSH GL +KG ++
Sbjct: 473 KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQY 532
Query: 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255
F M + Y P +HY C+VDLLGR G L++A L++NMP + +A IW TLL A + H
Sbjct: 533 FYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 592
Query: 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWL 315
+T++A A++I + P+++ YVLLSN++AS+ RW V + R MR++ VKK PG SW+
Sbjct: 593 NTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Query: 316 EIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKH 375
EI+N+ H F++GD+ HP EI +LEEL MK GYV T +HD++ EEKE +++
Sbjct: 653 EIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRY 712
Query: 376 HSEKLAIAFA----EHTRGLIVML----------PFKYISEIKNREIIVRDASRFHHFRN 421
HSE+LA+A+ R + V+ KY++ I R II+RD +RFHHF++
Sbjct: 713 HSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKD 772
Query: 422 GKCSCGDYW 430
G CSCGDYW
Sbjct: 773 GSCSCGDYW 781
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 134/282 (47%), Gaps = 16/282 (5%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D+V+ +++ Y +SG + E ++ P+++V W +++G QN + E+ + +
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF---- 304
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIH--AEVVKAGASLDVGVISSLISMYSRCGC 122
DK+ + +S + LA QG+++ E+ +V +++I+ Y++CG
Sbjct: 305 ------DKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358
Query: 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182
+ ++ F + D V W++MIA Y G EA+ LF QME++ N +F S L
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418
Query: 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAI 242
C+ E G + +VK ++ + +CG ++EA L + M K + +
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLL-MYCKCGSIEEANDLFKEMAGK-DIV 476
Query: 243 IWKTLLSACKTHKSTDMAGRIAEEIL--GVNPQDAAPYVLLS 282
W T+++ H ++A R E + G+ P DA +LS
Sbjct: 477 SWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G+E G++L MY K GS+ E + + M +++++W T+IAG +++G E L +
Sbjct: 439 GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFF 498
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISS------LI 114
M+ G +PD T V+V+S+CS + +G+Q + + D GV+ + ++
Sbjct: 499 ESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ-----DYGVMPNSQHYACMV 553
Query: 115 SMYSRCGCLDDSVKTFLECEY-SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173
+ R G L+D+ + D +W +++ A HG E A +++ E E +
Sbjct: 554 DLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSG 613
Query: 174 V-TFVSLLYACS 184
+ +S LYA S
Sbjct: 614 MYVLLSNLYASS 625
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 133/277 (48%), Gaps = 45/277 (16%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
E DLV+ + + Y+++ +L + ++ +MP R+V +W T+++G AQNG +D ++
Sbjct: 123 ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDR 182
Query: 63 MRMVGFRPDK--ITFVSVISS------CSELATLGQGQQIHA---------------EVV 99
M P+K +++ +++S+ E L + ++ A ++V
Sbjct: 183 M------PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIV 236
Query: 100 KAGASL------DVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGK 153
+A DV +++I+ Y++ G +D++ + F E DV W++M++ Y +
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296
Query: 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213
EEA LF++M ++ N+V++ ++L E E FD+M + + +
Sbjct: 297 VEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCR-----NVSTWN 347
Query: 214 CVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
++ +CG + EA L MP K + + W +++
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 34/243 (13%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNG---LAEDVLDQYNLMRMVGFRPDK 72
YM++G E +V + MP + +++ +I+G +NG LA + D+ D
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP-------ERDL 126
Query: 73 ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLE 132
+++ +I LG+ + E+ + DV ++++S Y++ GC+DD+ F
Sbjct: 127 VSWNVMIKGYVRNRNLGKAR----ELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDR 182
Query: 133 CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK- 191
+ V W+++++AY + K EEA LF+ E + + + C G +K
Sbjct: 183 MPEKNDVSWNALLSAYVQNSKMEEACMLFKSRE---------NWALVSWNCLLGGFVKKK 233
Query: 192 ----GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTL 247
+FFD M + + + ++ + G +DEA L PV+ + W +
Sbjct: 234 KIVEARQFFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLFDESPVQ-DVFTWTAM 287
Query: 248 LSA 250
+S
Sbjct: 288 VSG 290
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 31/150 (20%)
Query: 127 VKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186
K L+C SD+ W+ I++Y G+ EA+ +F++M + + V++ ++
Sbjct: 53 TKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPR----WSSVSYNGMISGYLRN 108
Query: 187 GLKEKGMEFFD-----------LMVKKYRRKPRL-----------EHYTCVVDLL----G 220
G E + FD +M+K Y R L E C + +
Sbjct: 109 GEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYA 168
Query: 221 RCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
+ G +D+A ++ MP K N + W LLSA
Sbjct: 169 QNGCVDDARSVFDRMPEK-NDVSWNALLSA 197
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 352 bits (904), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 179/446 (40%), Positives = 262/446 (58%), Gaps = 18/446 (4%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF DL ++L +Y + G + E + IAW L++G Q+G E+ L +
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G + TF S + + SE A + QG+Q+HA + K G + V ++LISMY++C
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + D+ K FLE + V W+++I AY HG G EA++ F+QM N VT V +L
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL +KG+ +F+ M +Y P+ EHY CVVD+L R G L A I+ MP+K +
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD 860
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A++W+TLLSAC HK+ ++ A +L + P+D+A YVLLSN++A +K+W R+
Sbjct: 861 ALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQK 920
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E+ VKKEPG SW+E+KN +H F +GD++HP + EI Y ++LT GYV D +
Sbjct: 921 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSL 980
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP----------------FKYISEIK 404
++++ E+K+ + HSEKLAI+F L +P K++S++
Sbjct: 981 LNELQHEQKDPIIFIHSEKLAISFG--LLSLPATVPINVMKNLRVCNDCHAWIKFVSKVS 1038
Query: 405 NREIIVRDASRFHHFRNGKCSCGDYW 430
NREIIVRDA RFHHF G CSC DYW
Sbjct: 1039 NREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 132/262 (50%), Gaps = 6/262 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF D ++L +Y G+L+ E + M R+ + + TLI G +Q G E ++ +
Sbjct: 318 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M + G PD T S++ +CS TL +GQQ+HA K G + + + +L+++Y++C
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC 437
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
++ ++ FLE E +VVLW+ M+ AYG + +F QM+ +E N T+ S+L
Sbjct: 438 ADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 497
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTC--VVDLLGRCGYLDEAAALIRNMPVK 238
C G E G + ++K +L Y C ++D+ + G LD A ++ K
Sbjct: 498 KTCIRLGDLELGEQIHSQIIKT---NFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554
Query: 239 ANAIIWKTLLSACKTHKSTDMA 260
+ + W T+++ + D A
Sbjct: 555 -DVVSWTTMIAGYTQYNFDDKA 575
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 129/253 (50%), Gaps = 2/253 (0%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
F+L+ S L MY K G L ++ ++V++W T+IAG Q + L +
Sbjct: 521 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 580
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
M G R D++ + +S+C+ L L +GQQIHA+ +G S D+ ++L+++YSRCG
Sbjct: 581 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 640
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
+++S F + E D + W+++++ + G EEA+ +F +M ++ + N+ TF S +
Sbjct: 641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
A S ++G + ++ K E ++ + +CG + +A + K N
Sbjct: 701 AASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NE 758
Query: 242 IIWKTLLSACKTH 254
+ W +++A H
Sbjct: 759 VSWNAIINAYSKH 771
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 4/251 (1%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G V + L +Y ++G + +V + +++ +W+ +I+G ++N + + +
Sbjct: 217 GLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF 276
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M ++G P F SV+S+C ++ +L G+Q+H V+K G S D V ++L+S+Y
Sbjct: 277 CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL 336
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G L + F D V ++++I G GE+A+ LF++M E + T SL+
Sbjct: 337 GNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLV 396
Query: 181 YACSHCGLKEKGMEFFDLMVK-KYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
ACS G +G + K + ++E +++L +C ++ A V+
Sbjct: 397 VACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETALDYFLETEVE- 453
Query: 240 NAIIWKTLLSA 250
N ++W +L A
Sbjct: 454 NVVLWNVMLVA 464
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 10/267 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF + +L ++Y K + + NV+ W ++ GL +D+ + +
Sbjct: 419 GFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSF 475
Query: 61 NLMRMVGFR---PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117
+ R + P++ T+ S++ +C L L G+QIH++++K L+ V S LI MY
Sbjct: 476 RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMY 535
Query: 118 SRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177
++ G LD + + DVV W++MIA Y + ++A+ F QM + +++V
Sbjct: 536 AKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT 595
Query: 178 SLLYACSHC-GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236
+ + AC+ LKE V + L +V L RCG ++E+
Sbjct: 596 NAVSACAGLQALKEGQQIHAQACVSGF--SSDLPFQNALVTLYSRCGKIEESYLAFEQTE 653
Query: 237 VKANAIIWKTLLSACKTHKSTDMAGRI 263
N I W L+S + + + A R+
Sbjct: 654 AGDN-IAWNALVSGFQQSGNNEEALRV 679
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 98/242 (40%), Gaps = 7/242 (2%)
Query: 12 LAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD 71
L Y+ G L KV MP R + W +I A L +V + M P+
Sbjct: 126 LFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPN 185
Query: 72 KITFVSVISSC-SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTF 130
+ TF V+ +C +QIHA ++ G V + LI +YSR G +D + + F
Sbjct: 186 EGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVF 245
Query: 131 LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE 190
D W +MI+ + EAI LF M F S+L AC E
Sbjct: 246 DGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE 305
Query: 191 KGMEFFDLMVKKYRRKPRLEHYTC--VVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
G + L++K + Y C +V L G L A + NM + +A+ + TL+
Sbjct: 306 IGEQLHGLVLKLGFSS---DTYVCNALVSLYFHLGNLISAEHIFSNMSQR-DAVTYNTLI 361
Query: 249 SA 250
+
Sbjct: 362 NG 363
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 19/232 (8%)
Query: 67 GFRPDKITFVSVISSCSEL-ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125
G RP+ T ++ C + +L +G+++H++++K G + + L Y G L
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138
Query: 126 SVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185
+ K F E + W+ MI E LF +M + N+ TF +L AC
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-- 196
Query: 186 CGLKEKGMEFFDLMVKKYRR----KPRLEHYTC--VVDLLGRCGYLDEAAALIRNMPVKA 239
G FD++ + + R R C ++DL R G++D A + + +K
Sbjct: 197 ----RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKD 252
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEE--ILGVNPQDAAPYVLLSNIHASAK 289
++ W ++S ++ A R+ + +LG+ P PY S + A K
Sbjct: 253 HS-SWVAMISGLSKNECEAEAIRLFCDMYVLGIMP---TPYAFSSVLSACKK 300
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 349 bits (895), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 187/440 (42%), Positives = 276/440 (62%), Gaps = 15/440 (3%)
Query: 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPI-RNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
+VA +++ YMK+ + E + + M + +N++ W +I+G +N ED L + M
Sbjct: 217 VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAML 276
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
G RP+ S + CSEL+ L G+QIH V K+ DV ++SLISMY +CG L
Sbjct: 277 EEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELG 336
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
D+ K F + DVV W++MI+ Y HG ++A+ LF +M + + +TFV++L AC+
Sbjct: 337 DAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACN 396
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
H GL GM +F+ MV+ Y+ +P+ +HYTC+VDLLGR G L+EA LIR+MP + +A ++
Sbjct: 397 HAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVF 456
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
TLL AC+ HK+ ++A AE++L +N Q+AA YV L+NI+AS RW+ V+ R+ M+E
Sbjct: 457 GTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKES 516
Query: 305 NVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDM 364
NV K PG SW+EI+N+VH F D+ HP I L+EL +MKL GY P+ +H++
Sbjct: 517 NVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNV 576
Query: 365 DSEEKEYNLKHHSEKLAIAFA--EHTRGLIVML------------PFKYISEIKNREIIV 410
+ E+KE L HSEKLA+AF + +G + + K+ISEI+ REIIV
Sbjct: 577 EEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIV 636
Query: 411 RDASRFHHFRNGKCSCGDYW 430
RD +RFHHF++G CSCGDYW
Sbjct: 637 RDTTRFHHFKDGSCSCGDYW 656
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D+ A +SL MY K G L + K+ +M ++V+AW +I+G AQ+G A+ L + M
Sbjct: 318 DVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMI 377
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
RPD ITFV+V+ +C+ HA +V G + S++ Y D
Sbjct: 378 DNKIRPDWITFVAVLLACN-----------HAGLVNIG----MAYFESMVRDYKVEPQPD 422
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183
++ M+ G GK EEA+ L M F + F +LL AC
Sbjct: 423 H---------------YTCMVDLLGRAGKLEEALKLIRSM---PFRPHAAVFGTLLGAC 463
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 136/313 (43%), Gaps = 17/313 (5%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
E D + + + Y+++ + + + MP ++ +W T+I G A+ G E + +
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180
Query: 63 MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122
M +++++ ++IS E L + K V +++I+ Y +
Sbjct: 181 M----MEKNEVSWNAMISGYIECGDLEKASHF----FKVAPVRGVVAWTAMITGYMKAKK 232
Query: 123 LDDSVKTFLECEYS-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
++ + F + + ++V W++MI+ Y + + E+ + LF M ++ N S L
Sbjct: 233 VELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALL 292
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
CS + G + + V K + T ++ + +CG L +A L M K +
Sbjct: 293 GCSELSALQLGRQIHQI-VSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDV 350
Query: 242 IIWKTLLSACKTHKSTDMAGRIAEEILG--VNPQDAAPY--VLLSNIHASAKRWQGVSEF 297
+ W ++S H + D A + E++ + P D + VLL+ HA G++ F
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMIDNKIRP-DWITFVAVLLACNHAGLVN-IGMAYF 408
Query: 298 REAMRERNVKKEP 310
+R+ V+ +P
Sbjct: 409 ESMVRDYKVEPQP 421
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 47/234 (20%)
Query: 17 MKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV 76
++SG + +V M +N I W +L+ G +++ P ++
Sbjct: 72 VRSGDIDGALRVFHGMRAKNTITWNSLLIGISKD-------------------PSRMM-- 110
Query: 77 SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS 136
+ Q+ E+ + D + ++S Y R + + F +
Sbjct: 111 -------------EAHQLFDEIPEP----DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK 153
Query: 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196
D W++MI Y G+ E+A LF M +K N+V++ +++ CG EK FF
Sbjct: 154 DAASWNTMITGYARRGEMEKARELFYSMMEK----NEVSWNAMISGYIECGDLEKASHFF 209
Query: 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
+ + + +T ++ + ++ A A+ ++M V N + W ++S
Sbjct: 210 KVAPVR-----GVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISG 258
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 347 bits (891), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 176/444 (39%), Positives = 265/444 (59%), Gaps = 15/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF+ ++ GS+L +Y + G + + + V + RN ++W LIAG A+ E L+ +
Sbjct: 191 GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF 250
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M GFRP ++ S+ +CS L QG+ +HA ++K+G L ++L+ MY++
Sbjct: 251 QGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS 310
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + D+ K F DVV W+S++ AY HG G+EA+ FE+M + N+++F+S+L
Sbjct: 311 GSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVL 370
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL ++G +++LM KK P HY VVDLLGR G L+ A I MP++
Sbjct: 371 TACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPT 429
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A IWK LL+AC+ HK+T++ AE + ++P D P+V+L NI+AS RW + R+
Sbjct: 430 AAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKK 489
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E VKKEP SW+EI+N +H F D+ HP+ EI EE+ +++K GYVPDT
Sbjct: 490 MKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHV 549
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAE---------HTRGLIVM-----LPFKYISEIKNR 406
+ +D +E+E NL++HSEK+A+AFA H + I + K S++ R
Sbjct: 550 IVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGR 609
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRD +RFHHF++G CSC DYW
Sbjct: 610 EIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 139/275 (50%), Gaps = 4/275 (1%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
F D+V G++L +MY K GSL E KV MP R+ + W TLI+G +Q+ D L +N
Sbjct: 91 FRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFN 150
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
M G+ P++ T SVI + + G Q+H VK G +V V S+L+ +Y+R G
Sbjct: 151 QMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYG 210
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
+DD+ F E + V W+++IA + E+A+ LF+ M + F + ++ SL
Sbjct: 211 LMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFG 270
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
ACS G E+G M+K + T ++D+ + G + +A + + K +
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT-LLDMYAKSGSIHDARKIFDRL-AKRDV 328
Query: 242 IIWKTLLSACKTHKSTDMAGRIAEEI--LGVNPQD 274
+ W +LL+A H A EE+ +G+ P +
Sbjct: 329 VSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 102/209 (48%), Gaps = 14/209 (6%)
Query: 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTF 130
D+ + +++ C+ L QG+ +HA ++++ D+ + ++L++MY++CG L+++ K F
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 131 LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----- 185
+ D V W+++I+ Y H + +A+ F QM + + N+ T S++ A +
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178
Query: 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWK 245
CG + G K + + ++DL R G +D+A + + + N + W
Sbjct: 179 CGHQLHG------FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESR-NDVSWN 231
Query: 246 TLLSACKTHKSTDMAGRIAEEIL--GVNP 272
L++ T+ A + + +L G P
Sbjct: 232 ALIAGHARRSGTEKALELFQGMLRDGFRP 260
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 345 bits (885), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 181/456 (39%), Positives = 268/456 (58%), Gaps = 26/456 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVL--- 57
G + D ++L MY + G + ++ M R+++ W T+I G + ED L
Sbjct: 435 GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLL 494
Query: 58 -DQYNLMR-------MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV 109
NL R V +P+ IT ++++ SC+ L+ L +G++IHA +K + DV V
Sbjct: 495 HKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAV 554
Query: 110 ISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF 169
S+L+ MY++CGCL S K F + +V+ W+ +I AYG HG G+EAI+L M +
Sbjct: 555 GSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGV 614
Query: 170 EANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229
+ N+VTF+S+ ACSH G+ ++G+ F +M Y +P +HY CVVDLLGR G + EA
Sbjct: 615 KPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAY 674
Query: 230 ALIRNMPVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288
L+ MP N A W +LL A + H + ++ A+ ++ + P A+ YVLL+NI++SA
Sbjct: 675 QLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSA 734
Query: 289 KRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEM 348
W +E R M+E+ V+KEPG SW+E ++VH+F GD SHP+S ++ YLE L M
Sbjct: 735 GLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERM 794
Query: 349 KLRGYVPDTGADMHDMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVM------------ 394
+ GYVPDT +H+++ +EKE L HSEKLAIAF + G I+
Sbjct: 795 RKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCH 854
Query: 395 LPFKYISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
L K+IS+I +REII+RD RFH F+NG CSCGDYW
Sbjct: 855 LATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 127/280 (45%), Gaps = 16/280 (5%)
Query: 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY-NLMRMVG 67
GS+L MY ++ G +V M R + W +IAG +QN ++ L + + G
Sbjct: 341 GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAG 400
Query: 68 FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127
+ T V+ +C + + IH VVK G D V ++L+ MYSR G +D ++
Sbjct: 401 LLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAM 460
Query: 128 KTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-----------FEANDVTF 176
+ F + E D+V W++MI Y F E+A+ L +M+ E + N +T
Sbjct: 461 RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 520
Query: 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236
+++L +C+ KG E +K + + +VD+ +CG L + + +P
Sbjct: 521 MTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579
Query: 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEIL--GVNPQD 274
K N I W ++ A H + A + ++ GV P +
Sbjct: 580 QK-NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 618
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 6/251 (2%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
EL+ ++L MY K G L + ++ R+++ W T+++ QN + L+
Sbjct: 233 ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLRE 292
Query: 63 MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVG--VISSLISMYSRC 120
M + G PD+ T SV+ +CS L L G+++HA +K G SLD V S+L+ MY C
Sbjct: 293 MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG-SLDENSFVGSALVDMYCNC 351
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSL 179
+ + F + LW++MIA Y + +EA+ LF ME+ AN T +
Sbjct: 352 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
+ AC G + +VK+ + R T ++D+ R G +D A + M +
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT-LMDMYSRLGKIDIAMRIFGKMEDR- 469
Query: 240 NAIIWKTLLSA 250
+ + W T+++
Sbjct: 470 DLVTWNTMITG 480
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 9/261 (3%)
Query: 20 GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVI 79
S V G I + R+ WI L+ K ++ L + + Y M ++G +PD F +++
Sbjct: 45 ASAVSGAPSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALL 104
Query: 80 SSCSELATLGQGQQIHAEVVKAGASLD-VGVISSLISMYSRCGCLDDSVKTFLECEYSDV 138
+ ++L + G+QIHA V K G +D V V ++L+++Y +CG K F +
Sbjct: 105 KAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ 164
Query: 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDL 198
V W+S+I++ K E A+ F M + E + T VS++ ACS+ + E M
Sbjct: 165 VSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLM--MGK 222
Query: 199 MVKKY-RRKPRLEHY--TCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA-CKTH 254
V Y RK L + +V + G+ G L + L+ + + + + W T+LS+ C+
Sbjct: 223 QVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNE 281
Query: 255 KSTDMAGRIAEEIL-GVNPQD 274
+ + + E +L GV P +
Sbjct: 282 QLLEALEYLREMVLEGVEPDE 302
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 5/199 (2%)
Query: 1 GFELDLVA-GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQ 59
G+ +D V ++L ++Y K G KV + RN ++W +LI+ E L+
Sbjct: 127 GYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEA 186
Query: 60 YNLMRMVGFRPDKITFVSVISSCSELAT---LGQGQQIHAEVVKAGASLDVGVISSLISM 116
+ M P T VSV+++CS L L G+Q+HA ++ G L+ +I++L++M
Sbjct: 187 FRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAM 245
Query: 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176
Y + G L S D+V W++++++ + + EA+ +M + E ++ T
Sbjct: 246 YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 305
Query: 177 VSLLYACSHCGLKEKGMEF 195
S+L ACSH + G E
Sbjct: 306 SSVLPACSHLEMLRTGKEL 324
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 345 bits (885), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 274/446 (61%), Gaps = 25/446 (5%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
DLV+ ++L Y+ SG + E + + + M +N+++W+ +I+G A+NG E+ L ++ M+
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
GF P F I SC+ L GQQ HA+++K G + ++LI+MY++CG ++
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVE 469
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
++ + F D V W+++IAA G HG G EA++++E+M +K + +T +++L ACS
Sbjct: 470 EARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACS 529
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
H GL ++G ++FD M YR P +HY ++DLL R G +A ++I ++P K A IW
Sbjct: 530 HAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIW 589
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
+ LLS C+ H + ++ A+++ G+ P+ Y+LLSN+HA+ +W+ V+ R+ MR+R
Sbjct: 590 EALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDR 649
Query: 305 NVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDM 364
VKKE SW+E++ QVH F + D SHP + + +YL++L EM+ GYVPDT +HD+
Sbjct: 650 GVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDV 709
Query: 365 DSE-EKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYISEIK 404
+S+ KE L HSEK+A+AF GL+ + P F+++S +
Sbjct: 710 ESDGHKEDMLTTHSEKIAVAF-----GLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVV 764
Query: 405 NREIIVRDASRFHHFRNGKCSCGDYW 430
R+II+RD RFHHFRNG+CSCG++W
Sbjct: 765 QRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 37/305 (12%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIR-NVIAWITLIAGKAQNGLAEDVLDQY 60
E D + +++ Y+K+G GE+++ M ++A+ +I+G G ++ L+
Sbjct: 215 LEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMV 274
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G D+ T+ SVI +C+ L G+Q+HA V++ +SL+S+Y +C
Sbjct: 275 RRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR-EDFSFHFDNSLVSLYYKC 333
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAY-------------------------------G 149
G D++ F + D+V W+++++ Y
Sbjct: 334 GKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLA 393
Query: 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL 209
+G GEE + LF M+++ FE D F + +C+ G G ++ ++ K L
Sbjct: 394 ENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL-KIGFDSSL 452
Query: 210 EHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL- 268
++ + +CG ++EA + R MP +++ W L++A H A + EE+L
Sbjct: 453 SAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHGHGAEAVDVYEEMLK 511
Query: 269 -GVNP 272
G+ P
Sbjct: 512 KGIRP 516
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 44/288 (15%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPI--RNVIAWITLIAGKAQNGLAEDVLDQY 60
E D +A +++ Y SG + V P+ R+ + + +I G + N ++ +
Sbjct: 77 EPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLF 136
Query: 61 NLMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
M+ GF+PD TF SV++ + +A Q Q HA +K+GA V ++L+S+YS+
Sbjct: 137 CKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSK 196
Query: 120 CGC----LDDSVKTFLECEYSDVVLWSSMIAAY--------------------------- 148
C L + K F E D W++M+ Y
Sbjct: 197 CASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNA 256
Query: 149 ---GFHGKG--EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY 203
G+ +G +EA+ + +M E ++ T+ S++ AC+ GL + G + ++
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL--- 313
Query: 204 RRKPRLEHY-TCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
RR+ H+ +V L +CG DEA A+ MP K + + W LLS
Sbjct: 314 RREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSG 360
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF+ L AG++L MY K G + E +V R MP + ++W LIA Q+G + +D Y
Sbjct: 447 GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVY 506
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV--ISSLISMYS 118
M G RPD+IT ++V+++CS + QG++ + + ++ + G + LI +
Sbjct: 507 EEMLKKGIRPDRITLLTVLTACSHAGLVDQGRK-YFDSMETVYRIPPGADHYARLIDLLC 565
Query: 119 RCGCLDDSVKTFLECEYSDVV-LWSSMIAAYGFHGKGEEAI 158
R G D+ + +W ++++ HG E I
Sbjct: 566 RSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGI 606
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 344 bits (883), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 173/440 (39%), Positives = 266/440 (60%), Gaps = 15/440 (3%)
Query: 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRM 65
L G+SL MY K E E + + +P R ++W LI+G Q GL L + MR
Sbjct: 386 LHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445
Query: 66 VGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125
R D+ TF +V+ + + A+L G+Q+HA ++++G +V S L+ MY++CG + D
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKD 505
Query: 126 SVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185
+V+ F E + V W+++I+A+ +G GE AI F +M + + + V+ + +L ACSH
Sbjct: 506 AVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSH 565
Query: 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWK 245
CG E+G E+F M Y P+ +HY C++DLLGR G EA L+ MP + + I+W
Sbjct: 566 CGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWS 625
Query: 246 TLLSACKTHKSTDMAGRIAEEILGVNP-QDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
++L+AC+ HK+ +A R AE++ + +DAA YV +SNI+A+A W+ V + ++AMRER
Sbjct: 626 SVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRER 685
Query: 305 NVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDM 364
+KK P SW+E+ +++H F+ D++HP EI + ELT+E++ GY PDT + + D+
Sbjct: 686 GIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDV 745
Query: 365 DSEEKEYNLKHHSEKLAIAFAEHTR----GLIVM----------LPFKYISEIKNREIIV 410
D + K +LK+HSE+LA+AFA + ++VM K IS+I REI V
Sbjct: 746 DEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITV 805
Query: 411 RDASRFHHFRNGKCSCGDYW 430
RD SRFHHF G CSCGDYW
Sbjct: 806 RDTSRFHHFSEGVCSCGDYW 825
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 14/256 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF D G+ + Y K ++E + MP + +++ +I+ +Q E L +
Sbjct: 280 GFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFF 339
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M+ +GF F +++S + L++L G+Q+H + + A A + V +SL+ MY++C
Sbjct: 340 REMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC 399
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAY---GFHGKGEEAINLFEQMEQKEFEANDVTFV 177
+++ F V W+++I+ Y G HG G + LF +M A+ TF
Sbjct: 400 EMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG---LKLFTKMRGSNLRADQSTFA 456
Query: 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY---TCVVDLLGRCGYLDEAAALIRN 234
++L A + G + ++ R LE+ + +VD+ +CG + +A +
Sbjct: 457 TVLKASASFASLLLGKQLHAFII----RSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEE 512
Query: 235 MPVKANAIIWKTLLSA 250
MP + NA+ W L+SA
Sbjct: 513 MPDR-NAVSWNALISA 527
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 2/219 (0%)
Query: 32 MPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91
+P ++ + + TLI G ++GL + + + MR G +P TF V+ + L G
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALG 269
Query: 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH 151
QQ+HA V G S D V + ++ YS+ + ++ F E D V ++ +I++Y
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329
Query: 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEH 211
+ E +++ F +M+ F+ + F ++L ++ + G + L
Sbjct: 330 DQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQ-LHCQALLATADSILHV 388
Query: 212 YTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
+VD+ +C +EA + +++P + + W L+S
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQR-TTVSWTALISG 426
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 4/184 (2%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
++ +GS L MY K GS+ + +V MP RN ++W LI+ A NG E + + M
Sbjct: 486 NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMI 545
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQ-IHAEVVKAGASLDVGVISSLISMYSRCGCL 123
G +PD ++ + V+++CS + QG + A G + + ++ + R G
Sbjct: 546 ESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRF 605
Query: 124 DDSVKTFLECEY-SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL--L 180
++ K E + D ++WSS++ A H A E++ E + +VS+ +
Sbjct: 606 AEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNI 665
Query: 181 YACS 184
YA +
Sbjct: 666 YAAA 669
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 4/182 (2%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLM- 63
+ V+ +++ ++K+G + + MP R V+ W L+ A+N ++ + M
Sbjct: 78 NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137
Query: 64 -RMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122
PD +TF +++ C++ Q+HA VK G + + S + + S C
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV 197
Query: 123 --LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
LD + F E D V ++++I Y G E+I+LF +M Q + +D TF +L
Sbjct: 198 RRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVL 257
Query: 181 YA 182
A
Sbjct: 258 KA 259
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 344 bits (882), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 175/441 (39%), Positives = 273/441 (61%), Gaps = 16/441 (3%)
Query: 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRM 65
++A +++ + G + + +V M RN +W T+I +NG + LD + LM+
Sbjct: 265 VIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQK 324
Query: 66 VGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125
G RP T +S++S C+ LA+L G+Q+HA++V+ +DV V S L++MY +CG L
Sbjct: 325 QGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVK 384
Query: 126 SVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQME-QKEFEANDVTFVSLLYACS 184
S F D+++W+S+I+ Y HG GEEA+ +F +M + N+VTFV+ L ACS
Sbjct: 385 SKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACS 444
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
+ G+ E+G++ ++ M + KP HY C+VD+LGR G +EA +I +M V+ +A +W
Sbjct: 445 YAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVW 504
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
+LL AC+TH D+A A++++ + P+++ Y+LLSN++AS RW V+E R+ M+ R
Sbjct: 505 GSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTR 564
Query: 305 NVKKEPGVSWLEIKNQVHQFTMGD-KSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHD 363
V+K PG SW E++N+VH FT G SHP I L+EL ++ GY PD +HD
Sbjct: 565 LVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHD 624
Query: 364 MDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVML------------PFKYISEIKNREII 409
+D EEK +LK+HSE+LA+A+A + + G+ + + K IS++K REII
Sbjct: 625 VDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREII 684
Query: 410 VRDASRFHHFRNGKCSCGDYW 430
+RDA+RFHHFRNG+CSC DYW
Sbjct: 685 LRDANRFHHFRNGECSCKDYW 705
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
F++D+ S L MY+K G LV+ + + P +++I W ++I+G A +GL E+ L +
Sbjct: 362 FDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFC 421
Query: 62 LMRMVG-FRPDKITFVSVISSCSELATLGQGQQIHAEVVKA-GASLDVGVISSLISMYSR 119
M + G +P+++TFV+ +S+CS + +G +I+ + G + ++ M R
Sbjct: 422 EMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGR 481
Query: 120 CGCLDDSVKTFLECEY-SDVVLWSSMIAAYGFHGK 153
G +++++ D +W S++ A H +
Sbjct: 482 AGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQ 516
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 116/244 (47%), Gaps = 18/244 (7%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
++++ + L YMK+G + E KV LMP RNV++W L+ G NG + + M
Sbjct: 78 NIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP 137
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
+K+++ ++ + + +++ + D +S+I + G +D
Sbjct: 138 ----EKNKVSWTVMLIGFLQDGRIDDACKLYEMI----PDKDNIARTSMIHGLCKEGRVD 189
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
++ + F E V+ W++M+ YG + + ++A +F+ M +K +V++ S+L
Sbjct: 190 EAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYV 245
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
G E E F++M KP + ++ LG+ G + +A + +M + +A W
Sbjct: 246 QNGRIEDAEELFEVMPV----KPVIA-CNAMISGLGQKGEIAKARRVFDSMKERNDA-SW 299
Query: 245 KTLL 248
+T++
Sbjct: 300 QTVI 303
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173
I+ SR G + ++ K F C+ + W+SM+A Y + +A LF++M + N
Sbjct: 24 ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDR----NI 79
Query: 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIR 233
+++ L+ G ++ + FDLM ++ + +T +V G +D A +L
Sbjct: 80 ISWNGLVSGYMKNGEIDEARKVFDLMPER-----NVVSWTALVKGYVHNGKVDVAESLFW 134
Query: 234 NMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK--RW 291
MP K N + W +L D A ++ E I D S IH K R
Sbjct: 135 KMPEK-NKVSWTVMLIGFLQDGRIDDACKLYEMI-----PDKDNIARTSMIHGLCKEGRV 188
Query: 292 QGVSEFREAMRERNV 306
E + M ER+V
Sbjct: 189 DEAREIFDEMSERSV 203
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 12/160 (7%)
Query: 106 DVGVIS--SLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQ 163
D +IS L+S Y + G +D++ K F +VV W++++ Y +GK + A +LF +
Sbjct: 76 DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135
Query: 164 MEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223
M +K N V++ +L G + + ++++ K T ++ L + G
Sbjct: 136 MPEK----NKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIA-----RTSMIHGLCKEG 186
Query: 224 YLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRI 263
+DEA + M ++ I W T+++ + D A +I
Sbjct: 187 RVDEAREIFDEMSERS-VITWTTMVTGYGQNNRVDDARKI 225
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 168/444 (37%), Positives = 266/444 (59%), Gaps = 16/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G E D+ S+L ++ K G + V M + I W ++I G AQN ++ L+ +
Sbjct: 189 GLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELF 248
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M+ GF ++ T SV+ +C+ LA L G Q H +VK L + ++L+ MY +C
Sbjct: 249 KRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILN--NALVDMYCKC 306
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G L+D+++ F + + DV+ WS+MI+ +G +EA+ LFE+M+ + N +T V +L
Sbjct: 307 GSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVL 366
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
+ACSH GL E G +F M K Y P EHY C++DLLG+ G LD+A L+ M + +
Sbjct: 367 FACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPD 426
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A+ W+TLL AC+ ++ +A A++++ ++P+DA Y LLSNI+A++++W V E R
Sbjct: 427 AVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTR 486
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
MR+R +KKEPG SW+E+ Q+H F +GD SHP+ +E+ L +L + GYVP+T
Sbjct: 487 MRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFV 546
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLPF--------------KYISEIKNR 406
+ D++ E+ E +L+HHSEKLA+AF T + ++ K S+++ R
Sbjct: 547 LQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIR 606
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
I++RD R+HHF++GKCSCGDYW
Sbjct: 607 SIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 139/256 (54%), Gaps = 7/256 (2%)
Query: 12 LAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD 71
L +MY+K L + ++ MP RNVI+W T+I+ ++ + + L+ LM RP+
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161
Query: 72 KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFL 131
T+ SV+ SC+ ++ + + +H ++K G DV V S+LI ++++ G +D++ F
Sbjct: 162 VYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFD 218
Query: 132 ECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191
E D ++W+S+I + + + + A+ LF++M++ F A T S+L AC+ L E
Sbjct: 219 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278
Query: 192 GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSAC 251
GM+ + + KY + L + +VD+ +CG L++A + M + + I W T++S
Sbjct: 279 GMQAH-VHIVKYDQDLILNN--ALVDMYCKCGSLEDALRVFNQMKER-DVITWSTMISGL 334
Query: 252 KTHKSTDMAGRIAEEI 267
+ + A ++ E +
Sbjct: 335 AQNGYSQEALKLFERM 350
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 67 GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS 126
G D T+ +I C + +G I + G + +++ LI+MY + L+D+
Sbjct: 56 GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115
Query: 127 VKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS-- 184
+ F + +V+ W++MI+AY ++A+ L M + N T+ S+L +C+
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGM 175
Query: 185 ------HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVK 238
HCG+ ++G+E D+ V+ + ++D+ + G ++A ++ M V
Sbjct: 176 SDVRMLHCGIIKEGLE-SDVFVR-----------SALIDVFAKLGEPEDALSVFDEM-VT 222
Query: 239 ANAIIWKTLLSACKTHKSTDMA 260
+AI+W +++ + +D+A
Sbjct: 223 GDAIVWNSIIGGFAQNSRSDVA 244
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 342 bits (878), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 269/444 (60%), Gaps = 15/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G E++ SL MY K G + + + M N+I W +I+G A+NG A + +D +
Sbjct: 252 GLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMF 311
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ M RPD I+ S IS+C+++ +L Q + ++ V ++ DV + S+LI M+++C
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++ + F DVV+WS+MI YG HG+ EAI+L+ ME+ NDVTF+ LL
Sbjct: 372 GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
AC+H G+ +G FF+ M ++ P+ +HY CV+DLLGR G+LD+A +I+ MPV+
Sbjct: 432 MACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPG 490
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+W LLSACK H+ ++ A+++ ++P + YV LSN++A+A+ W V+E R
Sbjct: 491 VTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVR 550
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E+ + K+ G SW+E++ ++ F +GDKSHPR EI+ +E + S +K G+V + A
Sbjct: 551 MKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDAS 610
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA----------EHTRGLIVML----PFKYISEIKNR 406
+HD++ EE E L HSE++AIA+ T+ L + K IS++ +R
Sbjct: 611 LHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDR 670
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EI+VRD +RFHHF++G CSCGDYW
Sbjct: 671 EIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 150/286 (52%), Gaps = 8/286 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPI--RNVIAWITLIAGKAQNGLAEDVLD 58
GF+ D+ + L +Y K L V +P+ R +++W +++ AQNG + L+
Sbjct: 149 GFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALE 208
Query: 59 QYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118
++ MR + +PD + VSV+++ + L L QG+ IHA VVK G ++ ++ SL +MY+
Sbjct: 209 IFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYA 268
Query: 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178
+CG + + F + + +++LW++MI+ Y +G EAI++F +M K+ + ++ S
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS 328
Query: 179 LLYACSHCGLKEKGMEFFDLMVKK-YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPV 237
+ AC+ G E+ ++ + + YR + + ++D+ +CG + E A L+ + +
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSV-EGARLVFDRTL 385
Query: 238 KANAIIWKTLLSACKTHKSTDMAGRI--AEEILGVNPQDAAPYVLL 281
+ ++W ++ H A + A E GV+P D LL
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 6/244 (2%)
Query: 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR 69
+ L H G + +V +P + W +I G ++N +D L Y+ M++
Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116
Query: 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKT 129
PD TF ++ +CS L+ L G+ +HA+V + G DV V + LI++Y++C L +
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176
Query: 130 F--LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187
F L +V W+++++AY +G+ EA+ +F QM + + + + V VS+L A +
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQ 236
Query: 188 LKEKGMEFFDLMVK-KYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKT 246
++G +VK +P L + + +CG + A L M N I+W
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNA 293
Query: 247 LLSA 250
++S
Sbjct: 294 MISG 297
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 342 bits (878), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/449 (38%), Positives = 272/449 (60%), Gaps = 26/449 (5%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
E LV+ +++ Y K G++ + M R++++W +I G AQ+G D L +
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 63 MRMVG-FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
+ G +PD+IT V+ +S+CS++ L G+ IH V + L+V V + LI MYS+CG
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-KEFEANDVTFVSLL 180
L+++V F + D+V W++MIA Y HG ++A+ LF +M+ + D+TF+ L
Sbjct: 309 SLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTL 368
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
AC+H GL +G+ F+ M ++Y KP++EHY C+V LLGR G L A I+NM + A+
Sbjct: 369 QACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDAD 428
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+++W ++L +CK H + IAE ++G+N +++ YVLLSNI+AS ++GV++ R
Sbjct: 429 SVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNL 488
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E+ + KEPG+S +EI+N+VH+F GD+ H +S EI L +++ +K GYVP+T
Sbjct: 489 MKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTV 548
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYIS 401
+ D++ EKE +L+ HSE+LAIA+ GLI P K IS
Sbjct: 549 LQDLEETEKEQSLQVHSERLAIAY-----GLISTKPGSPLKIFKNLRVCSDCHTVTKLIS 603
Query: 402 EIKNREIIVRDASRFHHFRNGKCSCGDYW 430
+I R+I++RD +RFHHF +G CSCGD+W
Sbjct: 604 KITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 129/296 (43%), Gaps = 43/296 (14%)
Query: 50 NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV 109
NGL + Y + P++ TF S++ SCS + G+ IH V+K G +D V
Sbjct: 108 NGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYV 163
Query: 110 ISSLISMYSRCGCLDDSVKTFLE--------------------------------CEYSD 137
+ L+ +Y++ G + + K F CE D
Sbjct: 164 ATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCE-RD 222
Query: 138 VVLWSSMIAAYGFHGKGEEAINLFEQ-MEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196
+V W+ MI Y HG +A+ LF++ + + + + +++T V+ L ACS G E G +
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWI 281
Query: 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKS 256
+ VK R + ++ T ++D+ +CG L+EA + + P K + + W +++ H
Sbjct: 282 HVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRK-DIVAWNAMIAGYAMHGY 340
Query: 257 TDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW---QGVSEFREAMRERNVKKE 309
+ A R+ E+ G+ + + A A +G+ F +E +K +
Sbjct: 341 SQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPK 396
Score = 38.5 bits (88), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176
Y+ G + S+ F + D+ L+++ I +G ++A L+ Q+ E N+ TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236
SLL +CS K + V K+ T +VD+ + G + A + MP
Sbjct: 134 SSLLKSCS-----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 237 VKANAIIWKTLLSACKTHKSTDMAGR 262
+ +++ T + C + A R
Sbjct: 189 ER--SLVSSTAMITCYAKQGNVEAAR 212
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 340 bits (872), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 271/449 (60%), Gaps = 24/449 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G++LDL S + MY+K G + + +P+ + +AW T+I+G +NG E +
Sbjct: 547 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVF 606
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ MR++G PD+ T ++ + S L L QG+QIHA +K + D V +SL+ MY++C
Sbjct: 607 SQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKC 666
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G +DD+ F E ++ W++M+ HG+G+E + LF+QM+ + + VTF+ +L
Sbjct: 667 GSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVL 726
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL + + M Y KP +EHY+C+ D LGR G + +A LI +M ++A+
Sbjct: 727 SACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEAS 786
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A +++TLL+AC+ T+ R+A ++L + P D++ YVLLSN++A+A +W + R
Sbjct: 787 ASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTM 846
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+ VKK+PG SW+E+KN++H F + D+S+ ++ I ++++ ++K GYVP+T
Sbjct: 847 MKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFT 906
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYIS 401
+ D++ EEKE L +HSEKLA+AF GL+ P KYI+
Sbjct: 907 LVDVEEEEKERALYYHSEKLAVAF-----GLLSTPPSTPIRVIKNLRVCGDCHNAMKYIA 961
Query: 402 EIKNREIIVRDASRFHHFRNGKCSCGDYW 430
++ NREI++RDA+RFH F++G CSCGDYW
Sbjct: 962 KVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 6/277 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G +L L +SL +MY K V M R++I+W ++IAG AQNGL + + +
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF 404
Query: 61 NLMRMVGFRPDKITFVSVISSCSELAT-LGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
+ G +PD+ T SV+ + S L L +Q+H +K D V ++LI YSR
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSR 464
Query: 120 CGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179
C+ ++ + E D+V W++M+A Y G + + LF M ++ ++D T ++
Sbjct: 465 NRCMKEA-EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATV 523
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
C +G + +K L + ++D+ +CG + A ++PV
Sbjct: 524 FKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-P 581
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEE--ILGVNPQD 274
+ + W T++S C + + A + + ++GV P +
Sbjct: 582 DDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDE 618
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 6/277 (2%)
Query: 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95
+++AW ++AG Q+ L + LM G R D T +V +C L + QG+Q+H
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540
Query: 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGE 155
A +K+G LD+ V S ++ MY +CG + + F D V W++MI+ +G+ E
Sbjct: 541 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEE 600
Query: 156 EAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVK-KYRRKPRLEHYTC 214
A ++F QM ++ T +L A S E+G + +K P + T
Sbjct: 601 RAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TS 658
Query: 215 VVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEI--LGVNP 272
+VD+ +CG +D+A L + + + N W +L H ++ +++ LG+ P
Sbjct: 659 LVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKP 717
Query: 273 QDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKE 309
+LS S + R + +K E
Sbjct: 718 DKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPE 754
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNG--LAEDVLDQYNLMRMVG 67
++L MY K GSL +V MP R++++W +++A AQ+ + E++ + L R++
Sbjct: 78 NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRIL- 136
Query: 68 FRPD-----KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122
R D ++T ++ C + + H K G D V +L+++Y + G
Sbjct: 137 -RQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGK 195
Query: 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176
+ + F E Y DVVLW+ M+ AY G EEAI+L N++T
Sbjct: 196 VKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 62/114 (54%)
Query: 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTF 130
D++TF+ ++++ ++ +L GQQ+H +K G L + V +SLI+MY + + F
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 131 LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
D++ W+S+IA +G EA+ LF Q+ + + + T S+L A S
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 91 GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGF 150
G+ HA ++ + + +I++LISMYS+CG L + + F + D+V W+S++AAY
Sbjct: 58 GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117
Query: 151 HGKG-----EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRR 205
+ ++A LF + Q + +T +L C H G F Y
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESF-----HGYAC 172
Query: 206 KPRLEHYTCV----VDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
K L+ V V++ + G + E L MP + + ++W +L A
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKA 220
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 32/180 (17%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + D +L ++Y+K G + EG+ + MP R+V+ W ++ + G E+ +D
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ G P++IT ++ A + +G D G + S +
Sbjct: 235 SAFHSSGLNPNEITL-----------------RLLARI--SGDDSDAGQVKSFAN----- 270
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G SV S+++ + ++ Y G+ + F M + + E + VTF+ +L
Sbjct: 271 GNDASSV--------SEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 340 bits (871), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 266/442 (60%), Gaps = 15/442 (3%)
Query: 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLM 63
D+ ++L MY K GS+ E E V M ++++I+W T+I G ++N A + L +NL+
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 489
Query: 64 -RMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122
F PD+ T V+ +C+ L+ +G++IH +++ G D V +SL+ MY++CG
Sbjct: 490 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGA 549
Query: 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182
L + F + D+V W+ MIA YG HG G+EAI LF QM Q EA++++FVSLLYA
Sbjct: 550 LLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYA 609
Query: 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAI 242
CSH GL ++G FF++M + + +P +EHY C+VD+L R G L +A I NMP+ +A
Sbjct: 610 CSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDAT 669
Query: 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302
IW LL C+ H +A ++AE++ + P++ YVL++NI+A A++W+ V R+ +
Sbjct: 670 IWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIG 729
Query: 303 ERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMH 362
+R ++K PG SW+EIK +V+ F GD S+P + I+ +L ++ + M GY P T +
Sbjct: 730 QRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALI 789
Query: 363 DMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVMLP------------FKYISEIKNREI 408
D + EKE L HSEKLA+A G I+ + K++S++ REI
Sbjct: 790 DAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREI 849
Query: 409 IVRDASRFHHFRNGKCSCGDYW 430
++RD++RFH F++G CSC +W
Sbjct: 850 VLRDSNRFHQFKDGHCSCRGFW 871
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 6/270 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF G+SL Y+K+ + KV M R+VI+W ++I G NGLAE L +
Sbjct: 225 GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M + G D T VSV + C++ + G+ +H+ VKA S + ++L+ MYS+C
Sbjct: 285 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC 344
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G LD + F E VV ++SMIA Y G EA+ LFE+ME++ + T ++L
Sbjct: 345 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 404
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
C+ L ++G + +K+ + ++D+ +CG + EA + M VK +
Sbjct: 405 NCCARYRLLDEGKRVHE-WIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-D 462
Query: 241 AIIWKTLLSA----CKTHKSTDMAGRIAEE 266
I W T++ C +++ + + EE
Sbjct: 463 IISWNTIIGGYSKNCYANEALSLFNLLLEE 492
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 126/246 (51%), Gaps = 3/246 (1%)
Query: 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR 69
++L MY K G L + V R M R+V+++ ++IAG A+ GLA + + + M G
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394
Query: 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKT 129
PD T +V++ C+ L +G+++H + + D+ V ++L+ MY++CG + ++
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454
Query: 130 FLECEYSDVVLWSSMIAAYGFHGKGEEAINLFE-QMEQKEFEANDVTFVSLLYACSHCGL 188
F E D++ W+++I Y + EA++LF +E+K F ++ T +L AC+
Sbjct: 455 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514
Query: 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
+KG E +++ R +VD+ +CG L A L ++ K + + W ++
Sbjct: 515 FDKGREIHGYIMRNGYFSDR-HVANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMI 572
Query: 249 SACKTH 254
+ H
Sbjct: 573 AGYGMH 578
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 3/240 (1%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF +D GS L+ MY G L E +V + I + W L+ A++G + +
Sbjct: 124 GFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLF 183
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G D TF V S S L ++ G+Q+H ++K+G V +SL++ Y +
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
+D + K F E DV+ W+S+I Y +G E+ +++F QM E + T VS+
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF 303
Query: 181 YACSHCGLKEKGMEFFDLMVKK-YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
C+ L G + VK + R+ R ++D+ +CG LD A A+ R M ++
Sbjct: 304 AGCADSRLISLGRAVHSIGVKACFSREDRF--CNTLLDMYSKCGDLDSAKAVFREMSDRS 361
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G+ D +SL MY K G+L+ + + +++++W +IAG +G ++ + +
Sbjct: 529 GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV--ISSLISMYS 118
N MR G D+I+FVS++ +CS + +G + +++ ++ V + ++ M +
Sbjct: 589 NQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFF-NIMRHECKIEPTVEHYACIVDMLA 647
Query: 119 RCGCLDDSVKTFLECEY----SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170
R G D +K + E D +W +++ H + L E++ +K FE
Sbjct: 648 RTG---DLIKAYRFIENMPIPPDATIWGALLCGCRIH----HDVKLAEKVAEKVFE 696
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTF 130
D T SV+ C++ +L G+++ + G +D + S L MY+ CG L ++ + F
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 131 LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176
E + + W+ ++ G +I LF++M E + TF
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/440 (39%), Positives = 267/440 (60%), Gaps = 19/440 (4%)
Query: 10 SSLAHMYMKSGSLVEGEKVI-RLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF 68
++L Y K G + EK+ R+ R+ + W ++I+G N L LD M G
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQ 615
Query: 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128
R D + +V+S+ + +ATL +G ++HA V+A DV V S+L+ MYS+CG LD +++
Sbjct: 616 RLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALR 675
Query: 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQME-QKEFEANDVTFVSLLYACSHCG 187
F + W+SMI+ Y HG+GEEA+ LFE M+ + + VTFV +L ACSH G
Sbjct: 676 FFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735
Query: 188 LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTL 247
L E+G + F+ M Y PR+EH++C+ D+LGR G LD+ I MP+K N +IW+T+
Sbjct: 736 LLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTV 795
Query: 248 LSAC--KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305
L AC + ++ + AE + + P++A YVLL N++A+ RW+ + + R+ M++ +
Sbjct: 796 LGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDAD 855
Query: 306 VKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMD 365
VKKE G SW+ +K+ VH F GDKSHP + I L+EL +M+ GYVP TG ++D++
Sbjct: 856 VKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLE 915
Query: 366 SEEKEYNLKHHSEKLAIAF---AEHTRGLIVML------------PFKYISEIKNREIIV 410
E KE L +HSEKLA+AF A+ + L + + FKYIS+I+ R+II+
Sbjct: 916 QENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIIL 975
Query: 411 RDASRFHHFRNGKCSCGDYW 430
RD++RFHHF++G CSC D+W
Sbjct: 976 RDSNRFHHFQDGACSCSDFW 995
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 2/243 (0%)
Query: 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF 68
G+ L +MY K GS+ + +V M ++ ++W ++I G QNG + +++Y MR
Sbjct: 352 GNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDI 411
Query: 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128
P T +S +SSC+ L GQQIH E +K G L+V V ++L+++Y+ G L++ K
Sbjct: 412 LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRK 471
Query: 129 TFLECEYSDVVLWSSMIAAYGFHGKG-EEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187
F D V W+S+I A + EA+ F ++ + N +TF S+L A S
Sbjct: 472 IFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLS 531
Query: 188 LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTL 247
E G + L +K ++ G+CG +D + M + + + W ++
Sbjct: 532 FGELGKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSM 590
Query: 248 LSA 250
+S
Sbjct: 591 ISG 593
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 15/286 (5%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D+ ++L + Y+++G V KV MP+RN ++W +++G ++NG ++ L M
Sbjct: 35 DVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMV 94
Query: 65 MVGFRPDKITFVSVISSCSELATLGQ--GQQIHAEVVKAGASLDVGVISSLISMYSRC-G 121
G ++ FVSV+ +C E+ ++G G+QIH + K ++D V + LISMY +C G
Sbjct: 95 KEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIG 154
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
+ ++ F + E + V W+S+I+ Y G A +F M+ + TF SL+
Sbjct: 155 SVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLV- 213
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY---TCVVDLLGRCGYLDEAAALIRNMPVK 238
+ C L E + + ++ ++ L + +V + G L A + M +
Sbjct: 214 -TTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETR 272
Query: 239 ANAIIWKTLLSACKTHKSTDMAGRI---AEEILGVNPQDAAPYVLL 281
NA+ L+ K + A ++ ++ V+P+ YV+L
Sbjct: 273 -NAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE---SYVIL 314
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 11/257 (4%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G DL GS L + KSGSL KV M RN + L+ G + E+ +
Sbjct: 238 GLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLF 297
Query: 61 -NLMRMVGFRPDKITFVSVISSCSELAT-----LGQGQQIHAEVVKAG-ASLDVGVISSL 113
++ M+ P+ ++V ++SS E + L +G+++H V+ G VG+ + L
Sbjct: 298 MDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGL 355
Query: 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173
++MY++CG + D+ + F D V W+SMI +G EA+ ++ M + +
Sbjct: 356 VNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGS 415
Query: 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIR 233
T +S L +C+ + G + + K + ++ L GYL+E +
Sbjct: 416 FTLISSLSSCASLKWAKLGQQIHGESL-KLGIDLNVSVSNALMTLYAETGYLNECRKIFS 474
Query: 234 NMPVKANAIIWKTLLSA 250
+MP + + + W +++ A
Sbjct: 475 SMP-EHDQVSWNSIIGA 490
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
E D+V GS+L MY K G L + MP+RN +W ++I+G A++G E+ L +
Sbjct: 650 LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFE 709
Query: 62 LMRMVG-FRPDKITFVSVISSCSELATLGQG-QQIHAEVVKAGASLDVGVISSLISMYSR 119
M++ G PD +TFV V+S+CS L +G + + G + + S + + R
Sbjct: 710 TMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGR 769
Query: 120 CGCLDDSVKTFLE--CEYSDVVLWSSMIAA 147
G L D ++ F+E +V++W +++ A
Sbjct: 770 AGEL-DKLEDFIEKMPMKPNVLIWRTVLGA 798
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135
+S + SC + G + H+ + K DV + ++LI+ Y G + K F E
Sbjct: 7 LSFVQSC--VGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPL 64
Query: 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187
+ V W+ +++ Y +G+ +EA+ M ++ +N FVS+L AC G
Sbjct: 65 RNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIG 116
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/435 (39%), Positives = 257/435 (59%), Gaps = 25/435 (5%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75
Y K+G L K+ + I+N+++W T+I QNGLAE L +N+ R VG PD+ TF
Sbjct: 179 YGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATF 238
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135
++V+ SC ++ + Q IH ++ G S + + ++L+ +YS+ G L+DS F E
Sbjct: 239 LAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITS 298
Query: 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195
D + W++M+AAY HG G +AI FE M + VTF LL ACSH GL E+G +
Sbjct: 299 PDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHY 358
Query: 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255
F+ M K+YR PRL+HY+C+VDLLGR G L +A LI+ MP++ ++ +W LL AC+ +K
Sbjct: 359 FETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYK 418
Query: 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWL 315
T + + AE + + P+D YV+LSNI++++ W+ S R M+++ + + G S++
Sbjct: 419 DTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYI 478
Query: 316 EIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLR-GYVPDTGADMHDMDSEEKEYNLK 374
E N++H+F +GD SHP S +I L+E+ +MK GY T +HD+ + KE +
Sbjct: 479 EHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMIN 538
Query: 375 HHSEKLAIAFAEHTRGLIVMLPF-------------------KYISEIKNREIIVRDASR 415
HSEK+A+AF GL+V+ P K IS I+ R II+RD+ R
Sbjct: 539 QHSEKIAMAF-----GLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKR 593
Query: 416 FHHFRNGKCSCGDYW 430
FHHF +G CSC DYW
Sbjct: 594 FHHFLDGSCSCSDYW 608
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 128/249 (51%), Gaps = 6/249 (2%)
Query: 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRM--V 66
G L Y++ G V EK+ MP R++++W +LI+G + G + + M + V
Sbjct: 69 GDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEV 128
Query: 67 GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS 126
GFRP+++TF+S+IS+C + +G+ IH V+K G +V V+++ I+ Y + G L S
Sbjct: 129 GFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSS 188
Query: 127 VKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186
K F + ++V W++MI + +G E+ + F + E + TF+++L +C
Sbjct: 189 CKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDM 248
Query: 187 GLKEKGMEFFDL-MVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWK 245
G+ L M + + T ++DL + G L++++ + + +++ W
Sbjct: 249 GVVRLAQGIHGLIMFGGFSGNKCIT--TALLDLYSKLGRLEDSSTVFHEI-TSPDSMAWT 305
Query: 246 TLLSACKTH 254
+L+A TH
Sbjct: 306 AMLAAYATH 314
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 4/174 (2%)
Query: 77 SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS 136
S+I++ ++ + +H +VVK+ + + L+ Y R G + K F E
Sbjct: 36 SLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPER 95
Query: 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE--FEANDVTFVSLLYACSHCGLKEKGME 194
D+V W+S+I+ Y G + + +M E F N+VTF+S++ AC + G KE+G
Sbjct: 96 DLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRC 155
Query: 195 FFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
L V K+ ++ ++ G+ G L + L ++ +K N + W T++
Sbjct: 156 IHGL-VMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIK-NLVSWNTMI 207
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 9/207 (4%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF + ++L +Y K G L + V + + +AW ++A A +G D + +
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV--ISSLISMYS 118
LM G PD +TF ++++CS + +G+ + E + +D + S ++ +
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKH-YFETMSKRYRIDPRLDHYSCMVDLLG 383
Query: 119 RCGCLDDSVKTFLE--CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM-EQKEFEANDVT 175
R G L D+ E E S V W +++ A + + E++ E + + +
Sbjct: 384 RSGLLQDAYGLIKEMPMEPSSGV-WGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYV 442
Query: 176 FVSLLYACSHCGLKEKGMEFFDLMVKK 202
+S +Y+ S GL + +LM +K
Sbjct: 443 MLSNIYSAS--GLWKDASRIRNLMKQK 467
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/449 (37%), Positives = 254/449 (56%), Gaps = 26/449 (5%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
F+ + GS+L MY K L + V M +NV++W ++ G Q G AE+ + +
Sbjct: 301 FQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFL 360
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
M+ G PD T IS+C+ +++L +G Q H + + +G V V +SL+++Y +CG
Sbjct: 361 DMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCG 420
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
+DDS + F E D V W++M++AY G+ E I LF++M Q + + VT ++
Sbjct: 421 DIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVIS 480
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
ACS GL EKG +F LM +Y P + HY+C++DL R G L+EA I MP +A
Sbjct: 481 ACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDA 540
Query: 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301
I W TLLSAC+ + ++ AE ++ ++P A Y LLS+I+AS +W V++ R M
Sbjct: 541 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGM 600
Query: 302 RERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADM 361
RE+NVKKEPG SW++ K ++H F+ D+S P +I LEEL +++ GY PDT
Sbjct: 601 REKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVH 660
Query: 362 HDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP--------------------FKYIS 401
HD++ K L +HSE+LAIAF ++ +P K+IS
Sbjct: 661 HDVEEAVKVKMLNYHSERLAIAFG------LIFVPSGQPIRVGKNLRVCVDCHNATKHIS 714
Query: 402 EIKNREIIVRDASRFHHFRNGKCSCGDYW 430
+ REI+VRDA RFH F++G CSCGD+W
Sbjct: 715 SVTGREILVRDAVRFHRFKDGTCSCGDFW 743
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 40/284 (14%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVI---------------------- 38
GFE L+ GS L +MY G + + +KV + RN +
Sbjct: 169 GFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLF 228
Query: 39 --------AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQ 90
+W +I G AQNGLA++ ++ + M++ G + D+ F SV+ +C L + +
Sbjct: 229 RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINE 288
Query: 91 GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGF 150
G+QIHA +++ + V S+LI MY +C CL + F + +VV W++M+ YG
Sbjct: 289 GKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQ 348
Query: 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLE 210
G+ EEA+ +F M++ + + T + AC++ E+G +F + L
Sbjct: 349 TGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITS-----GLI 403
Query: 211 HYTCV----VDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
HY V V L G+CG +D++ L M V+ +A+ W ++SA
Sbjct: 404 HYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSA 446
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 120/275 (43%), Gaps = 33/275 (12%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN-LM 63
+L + ++L Y K+G + E E +P R+ + W LI G + +GL + YN +M
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 64 RMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123
R ++T ++++ S + G+QIH +V+K G + V S L+ MY+ GC+
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
Query: 124 DDSVKTF------------------LECEY------------SDVVLWSSMIAAYGFHGK 153
D+ K F L C D V W++MI +G
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGL 250
Query: 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213
+EAI F +M+ + + + F S+L AC G +G + +++ + + +
Sbjct: 251 AKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGS 309
Query: 214 CVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
++D+ +C L A + M K N + W ++
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMV 343
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/440 (36%), Positives = 260/440 (59%), Gaps = 24/440 (5%)
Query: 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR 69
++L +Y K + K+ P +++ +W +I+G QNGL ED + + M+ F
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKT 129
P+ +T ++S+C++L L G+ +H V + V ++LI MY++CG + ++ +
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 130 FLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189
F + V W++MI+ YG HG+G+EA+N+F +M VTF+ +LYACSH GL
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLV 537
Query: 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLS 249
++G E F+ M+ +Y +P ++HY C+VD+LGR G+L A I M ++ + +W+TLL
Sbjct: 538 KEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLG 597
Query: 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKE 309
AC+ HK T++A ++E++ ++P + +VLLSNIH++ + + + R+ ++R + K
Sbjct: 598 ACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKA 657
Query: 310 PGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEK 369
PG + +EI H FT GD+SHP+ EI LE+L +M+ GY P+T +HD++ EE+
Sbjct: 658 PGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEER 717
Query: 370 EYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYISEIKNREIIV 410
E +K HSE+LAIAF GLI P K IS+I R I+V
Sbjct: 718 ELMVKVHSERLAIAF-----GLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVV 772
Query: 411 RDASRFHHFRNGKCSCGDYW 430
RDA+RFHHF++G CSCGDYW
Sbjct: 773 RDANRFHHFKDGVCSCGDYW 792
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 10/274 (3%)
Query: 15 MYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKIT 74
+Y K G + G + R +++A+ +I G NG E L + + + G R T
Sbjct: 265 LYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSST 324
Query: 75 FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134
VS++ L + IH +K+ V ++L ++YS+ ++ + K F E
Sbjct: 325 LVSLVPVSGHLMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESP 381
Query: 135 YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGME 194
+ W++MI+ Y +G E+AI+LF +M++ EF N VT +L AC+ G G
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW 441
Query: 195 FFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTH 254
DL V+ + + T ++ + +CG + EA L ++ K N + W T++S H
Sbjct: 442 VHDL-VRSTDFESSIYVSTALIGMYAKCGSIAEARRLF-DLMTKKNEVTWNTMISGYGLH 499
Query: 255 KSTDMAGRIAEEIL--GVNPQDAAPYVLLSNIHA 286
A I E+L G+ P P L ++A
Sbjct: 500 GQGQEALNIFYEMLNSGITP---TPVTFLCVLYA 530
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + +L+ GS++ MY K + + KV MP ++ I W T+I+G +N + + + +
Sbjct: 149 GCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVF 208
Query: 61 -NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
+L+ R D T + ++ + +EL L G QIH+ K G V++ IS+YS+
Sbjct: 209 RDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSK 268
Query: 120 CGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179
CG + F E D+V +++MI Y +G+ E +++LF+++ T VSL
Sbjct: 269 CGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSL 328
Query: 180 LYACSHCGL 188
+ H L
Sbjct: 329 VPVSGHLML 337
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
FE + ++L MY K GS+ E ++ LM +N + W T+I+G +G ++ L+ +
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFY 510
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV-KAGASLDVGVISSLISMYSRC 120
M G P +TF+ V+ +CS + +G +I ++ + G V + ++ + R
Sbjct: 511 EMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRA 570
Query: 121 GCLDDSVKTFLECEYSD--VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170
G L +++ F+E + +W +++ A H + NL + +K FE
Sbjct: 571 GHLQRALQ-FIEAMSIEPGSSVWETLLGACRIH----KDTNLARTVSEKLFE 617
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 116/272 (42%), Gaps = 8/272 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF D+ + L G++ + + +V + L+ G + N L +
Sbjct: 47 GFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVF 106
Query: 61 -NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
+L + +P+ T+ IS+ S G+ IH + V G ++ + S+++ MY +
Sbjct: 107 AHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFK 166
Query: 120 CGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-VTFVS 178
++D+ K F D +LW++MI+ Y + E+I +F + + D T +
Sbjct: 167 FWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLD 226
Query: 179 LLYACSHCGLKEKGMEFFDLMVKK--YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236
+L A + GM+ L K Y L T + L +CG + +AL R
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVL---TGFISLYSKCGKIKMGSALFREFR 283
Query: 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEIL 268
K + + + ++ ++ T+++ + +E++
Sbjct: 284 -KPDIVAYNAMIHGYTSNGETELSLSLFKELM 314
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 331 bits (848), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 256/434 (58%), Gaps = 24/434 (5%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75
YM+ G + M R+V++W T+I+G + NG +D ++ + M+ RP+ +T
Sbjct: 218 YMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTL 277
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135
VSV+ + S L +L G+ +H +G +D + S+LI MYS+CG ++ ++ F
Sbjct: 278 VSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPR 337
Query: 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195
+V+ WS+MI + HG+ +AI+ F +M Q +DV +++LL ACSH GL E+G +
Sbjct: 338 ENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRY 397
Query: 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255
F MV +PR+EHY C+VDLLGR G LDEA I NMP+K + +IWK LL AC+
Sbjct: 398 FSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQG 457
Query: 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWL 315
+ +M R+A ++ + P D+ YV LSN++AS W VSE R M+E++++K+PG S +
Sbjct: 458 NVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLI 517
Query: 316 EIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKH 375
+I +H+F + D SHP++ EI+ L E++ +++L GY P T + +++ E+KE L +
Sbjct: 518 DIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHY 577
Query: 376 HSEKLAIAFAEHTRGLIVMLP-------------------FKYISEIKNREIIVRDASRF 416
HSEK+A AF GLI P K IS++ R+I VRD RF
Sbjct: 578 HSEKIATAF-----GLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRF 632
Query: 417 HHFRNGKCSCGDYW 430
HHF++G CSC DYW
Sbjct: 633 HHFQDGSCSCMDYW 646
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 137/308 (44%), Gaps = 56/308 (18%)
Query: 27 KVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQ---YNLMRMVGFRPDKITFVSVISSCS 83
K+ MP RN +W T+I G +++ + ++ Y +M P++ TF SV+ +C+
Sbjct: 80 KIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACA 139
Query: 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFL------------ 131
+ + +G+QIH +K G D V+S+L+ MY CG + D+ F
Sbjct: 140 KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMT 199
Query: 132 -----------------------ECEYS----------DVVLWSSMIAAYGFHGKGEEAI 158
+C+ + VV W++MI+ Y +G ++A+
Sbjct: 200 DRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAV 259
Query: 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218
+F +M++ + N VT VS+L A S G E G E+ L + + + ++D+
Sbjct: 260 EVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDM 318
Query: 219 LGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTH----KSTDMAGRIAEEILGVNPQD 274
+CG +++A + +P + N I W +++ H + D ++ + GV P D
Sbjct: 319 YSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQA--GVRPSD 375
Query: 275 AAPYVLLS 282
A LL+
Sbjct: 376 VAYINLLT 383
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 5/169 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G +D V GS+L MY K G + + V +P NVI W +I G A +G A D +D +
Sbjct: 304 GIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF 363
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA-GASLDVGVISSLISMYSR 119
MR G RP + +++++++CS + +G++ +++V G + ++ + R
Sbjct: 364 CKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGR 423
Query: 120 CGCLDDSVKTFLECEY-SDVVLWSSMIAAYGFHGK---GEEAINLFEQM 164
G LD++ + L D V+W +++ A G G+ N+ M
Sbjct: 424 SGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDM 472
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 330 bits (847), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 163/418 (38%), Positives = 252/418 (60%), Gaps = 19/418 (4%)
Query: 32 MPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91
M +++++W +I +N + + ++ Y+ M GF PD ++ SV+ +C + + L G
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328
Query: 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH 151
++IH + + ++ + ++LI MY++CGCL+ + F + DVV W++MI+AYGF
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388
Query: 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEH 211
G+G +A+ LF +++ + + FV+ L ACSH GL E+G F LM Y+ PRLEH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448
Query: 212 YTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271
C+VDLLGR G + EA I++M ++ N +W LL AC+ H TD+ A+++ +
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508
Query: 272 PQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSH 331
P+ + YVLLSNI+A A RW+ V+ R M+ + +KK PG S +E+ +H F +GD+SH
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568
Query: 332 PRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKHHSEKLAIAFA------ 385
P+S EI L+ L +MK GYVPD+ + +HD++ E+KE +L HSEKLAI FA
Sbjct: 569 PQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKE 628
Query: 386 --EHTRGLIVM-----------LPFKYISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
E + I + + K IS+I +REII+RD +RFH FR G CSCGDYW
Sbjct: 629 EEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 134/313 (42%), Gaps = 18/313 (5%)
Query: 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF 68
G L Y + KV +P RNVI +I NG + + + M
Sbjct: 77 GVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNV 136
Query: 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128
RPD TF V+ +CS T+ G++IH K G S + V + L+SMY +CG L ++
Sbjct: 137 RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188
E DVV W+S++ Y + + ++A+ + +ME + + T SLL A S+
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT-T 255
Query: 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPV---KANAIIWK 245
E M D+ K ++ L + ++ + + EA L M + +A+
Sbjct: 256 TENVMYVKDMFFKMGKKS--LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSIT 313
Query: 246 TLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN----IHASAKRWQGVSEFREAM 301
++L AC + + +I I + P +LL N ++A + + E M
Sbjct: 314 SVLPACGDTSALSLGKKIHGYI---ERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM 370
Query: 302 RERNVKKEPGVSW 314
+ R+V VSW
Sbjct: 371 KSRDV-----VSW 378
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
+L+ ++L MY K G L + V M R+V++W +I+ +G D + ++ ++
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQ 93
G PD I FV+ +++CS L +G+
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRS 431
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 13/206 (6%)
Query: 70 PDKITFV--SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127
P + F+ V+ + ++ TL + +H+ ++ + + L+ Y+ + +
Sbjct: 38 PQETVFLLGQVLDTYPDIRTL---RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASAR 94
Query: 128 KTFLECEYSDVVLWSSMIAAY---GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
K F E +V++ + MI +Y GF+G+G + +F M + TF +L ACS
Sbjct: 95 KVFDEIPERNVIIINVMIRSYVNNGFYGEG---VKVFGTMCGCNVRPDHYTFPCVLKACS 151
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
G G + K L +V + G+CG+L EA ++ M + + + W
Sbjct: 152 CSGTIVIGRKIHG-SATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSW 209
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGV 270
+L+ ++ D A + E+ V
Sbjct: 210 NSLVVGYAQNQRFDDALEVCREMESV 235
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/450 (39%), Positives = 259/450 (57%), Gaps = 32/450 (7%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + ++ +S MYMK GS+ G ++ MP++ +I W +I+G +QNGLA DVL+ Y
Sbjct: 186 GLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELY 245
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M+ G PD T VSV+SSC+ L G ++ V G +V V ++ ISMY+RC
Sbjct: 246 EQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARC 305
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G L + F +V W++MI YG HG GE + LF+ M ++ + FV +L
Sbjct: 306 GNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVL 365
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL +KG+E F M ++Y+ +P EHY+C+VDLLGR G LDEA I +MPV+ +
Sbjct: 366 SACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPD 425
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+W LL ACK HK+ DMA +++ P + YVL+SNI++ +K +G+ R
Sbjct: 426 GAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVM 485
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEEL-TSEMKLRGYVPDTGA 359
MRER +K+PG S++E K +VH F GD+SH ++ E+ L+EL TS M+L G
Sbjct: 486 MRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAG------- 538
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYI 400
+M EE + HSE+LAIAF G++ +P K +
Sbjct: 539 NMDCDRGEEVSSTTREHSERLAIAF-----GILNSIPGTEILVIKNLRVCEDCHVFLKQV 593
Query: 401 SEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
S+I +R+ +VRDASRFH+F++G CSC DYW
Sbjct: 594 SKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 149/315 (47%), Gaps = 8/315 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRN--VIAWITLIAGKAQNGLAEDVLD 58
G E + ++L MY K G + + KV P + + + LI+G N D
Sbjct: 83 GCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAY 142
Query: 59 QYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118
+ M+ G D +T + ++ C+ L G+ +H + VK G +V V++S I+MY
Sbjct: 143 MFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYM 202
Query: 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178
+CG ++ + F E ++ W+++I+ Y +G + + L+EQM+ + T VS
Sbjct: 203 KCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVS 262
Query: 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVK 238
+L +C+H G K+ G E L V+ P + + + RCG L +A A+ MPVK
Sbjct: 263 VLSSCAHLGAKKIGHEVGKL-VESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVK 321
Query: 239 ANAIIWKTLLSACKTHKSTDMAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSE 296
+ + W ++ H ++ + ++++ G+ P A ++LS S +G+
Sbjct: 322 S-LVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 380
Query: 297 FREAMRERNVKKEPG 311
FR RE K EPG
Sbjct: 381 FRAMKRE--YKLEPG 393
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 32/227 (14%)
Query: 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV 99
W + A L + + Y M G PD +F ++ SC+ L+ GQQ+H V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 100 KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD--VVLWSSMIAAYGFHGKGEEA 157
K G + V+++LISMY +CG + D+ K F E S V ++++I+ Y + K +A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCV-- 215
+F +M++ + VT + L+ C+ V +Y R H CV
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCT---------------VPEYLWLGRSLHGQCVKG 185
Query: 216 ------------VDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
+ + +CG ++ L MPVK I W ++S
Sbjct: 186 GLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKG-LITWNAVISG 231
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 269/446 (60%), Gaps = 16/446 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G+ + ++L MY + G + V MP+RNV++W +IA A+NG A + L +
Sbjct: 212 GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271
Query: 61 N-LMRMV-GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118
+MR P+ +T VSV+ +C+ LA L QG+ IH +++ G + VIS+L++MY
Sbjct: 272 REMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYG 331
Query: 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178
RCG L+ + F DVV W+S+I++YG HG G++AI +FE+M VTFVS
Sbjct: 332 RCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVS 391
Query: 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVK 238
+L ACSH GL E+G F+ M + + KP++EHY C+VDLLGR LDEAA ++++M +
Sbjct: 392 VLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451
Query: 239 ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFR 298
+W +LL +C+ H + ++A R + + + P++A YVLL++I+A A+ W V +
Sbjct: 452 PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVK 511
Query: 299 EAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTG 358
+ + R ++K PG W+E++ +++ F D+ +P +I +L +L +MK +GY+P T
Sbjct: 512 KLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTK 571
Query: 359 ADMHDMDSEEKEYNLKHHSEKLAIAFA----------EHTRGLIVM----LPFKYISEIK 404
++++++EEKE + HSEKLA+AF T+ L + L K+IS+
Sbjct: 572 GVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFM 631
Query: 405 NREIIVRDASRFHHFRNGKCSCGDYW 430
+EI+VRD +RFH F+NG CSCGDYW
Sbjct: 632 EKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 148/318 (46%), Gaps = 12/318 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + D + L MY GS+ KV R + W L G E+VL Y
Sbjct: 107 GSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166
Query: 61 NLMRMVGFRPDKITFVSVISSC--SELAT--LGQGQQIHAEVVKAGASLDVGVISSLISM 116
M +G D+ T+ V+ +C SE L +G++IHA + + G S V ++++L+ M
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDM 226
Query: 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM--EQKEFEANDV 174
Y+R GC+D + F +VV WS+MIA Y +GK EA+ F +M E K+ N V
Sbjct: 227 YARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSV 286
Query: 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRN 234
T VS+L AC+ E+G ++++ L + +V + GRCG L+ +
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMYGRCGKLEVGQRVFDR 345
Query: 235 MPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW--- 291
M + + + W +L+S+ H A +I EE+L N P +S + A +
Sbjct: 346 MHDR-DVVSWNSLISSYGVHGYGKKAIQIFEEMLA-NGASPTPVTFVSVLGACSHEGLVE 403
Query: 292 QGVSEFREAMRERNVKKE 309
+G F R+ +K +
Sbjct: 404 EGKRLFETMWRDHGIKPQ 421
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 7/212 (3%)
Query: 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKT 129
P + T+ +I C ++L ++H ++ G+ D + + LI MYS G +D + K
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 130 FLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC--SHCG 187
F + + +W+++ A G GEE + L+ +M + E++ T+ +L AC S C
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194
Query: 188 LKE--KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWK 245
+ KG E + ++ + T +VD+ R G +D A+ + MPV+ N + W
Sbjct: 195 VNHLMKGKEIHAHLTRR-GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR-NVVSWS 252
Query: 246 TLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277
+++ + A R E++ +D++P
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMR-ETKDSSP 283
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 327 bits (839), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 263/445 (59%), Gaps = 16/445 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF D+V+ +S+ Y K G + ++ MP RN+ W +I G A+N E +D +
Sbjct: 179 GFR-DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M+ G ++ VSVISSC+ L L G++ + VVK+ ++++ + ++L+ M+ RC
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++ ++ F +D + WSS+I HG +A++ F QM F DVTF ++L
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL EKG+E ++ M K + +PRLEHY C+VD+LGR G L EA I M VK N
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPN 417
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
A I LL ACK +K+T++A R+ ++ V P+ + YVLLSNI+A A +W + R+
Sbjct: 418 APILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDM 477
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMG-DKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
M+E+ VKK PG S +EI ++++FTMG D+ HP +I EE+ +++L GY +TG
Sbjct: 478 MKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGD 537
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVML------------PFKYISEIKN 405
D+D EEKE ++ HSEKLAIA+ + G + + K ISE+
Sbjct: 538 AFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYG 597
Query: 406 REIIVRDASRFHHFRNGKCSCGDYW 430
RE+IVRD +RFHHFRNG CSC DYW
Sbjct: 598 RELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 131/276 (47%), Gaps = 41/276 (14%)
Query: 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKT 129
PD ITF +I + SE+ + G+Q H+++V+ G DV V +SL+ MY+ CG + + +
Sbjct: 115 PDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRI 174
Query: 130 FLECEYSDVVLWSSMIAAY-----------------------------GFHGKG--EEAI 158
F + + DVV W+SM+A Y G+ E+AI
Sbjct: 175 FGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 234
Query: 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218
+LFE M+++ AN+ VS++ +C+H G E G ++ +VK + L T +VD+
Sbjct: 235 DLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDM 293
Query: 219 LGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEI--LGVNPQDAA 276
RCG +++A + +P + +++ W +++ H A ++ LG P+D
Sbjct: 294 FWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVT 352
Query: 277 PYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGV 312
+LS +G+ + N+KK+ G+
Sbjct: 353 FTAVLSACSHGGLVEKGLEIY------ENMKKDHGI 382
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/444 (37%), Positives = 266/444 (59%), Gaps = 17/444 (3%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
+L + ++L Y+K G + + + + + R+V+AW +I G Q+G + ++ +
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRS 403
Query: 63 MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122
M G RP+ T +++S S LA+L G+QIH VK+G V V ++LI+MY++ G
Sbjct: 404 MVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGN 463
Query: 123 LDDSVKTF--LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
+ + + F + CE D V W+SMI A HG EEA+ LFE M + + +T+V +
Sbjct: 464 ITSASRAFDLIRCE-RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
AC+H GL +G ++FD+M + P L HY C+VDL GR G L EA I MP++ +
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+ W +LLSAC+ HK+ D+ AE +L + P+++ Y L+N++++ +W+ ++ R++
Sbjct: 583 VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKS 642
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M++ VKKE G SW+E+K++VH F + D +HP EI + ++++ E+K GYVPDT +
Sbjct: 643 MKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASV 702
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA----EHTRGLIVM----------LPFKYISEIKNR 406
+HD++ E KE L+HHSEKLAIAF L +M K+IS++ R
Sbjct: 703 LHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGR 762
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRD +RFHHF++G CSC DYW
Sbjct: 763 EIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 38/311 (12%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN-LM 63
D+ + +++ ++M+ G + M R+++ W ++I+G Q G LD ++ ++
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270
Query: 64 RMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG-- 121
R PD+ T SV+S+C+ L L G+QIH+ +V G + V+++LISMYSRCG
Sbjct: 271 RDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330
Query: 122 ----------------------CLDDSVK---------TFLECEYSDVVLWSSMIAAYGF 150
LD +K F+ + DVV W++MI Y
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQ 390
Query: 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLE 210
HG EAINLF M N T ++L S G + VK +
Sbjct: 391 HGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS-VS 449
Query: 211 HYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL-- 268
++ + + G + A+ + + + + W +++ A H + A + E +L
Sbjct: 450 VSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLME 509
Query: 269 GVNPQDAAPYV 279
G+ P D YV
Sbjct: 510 GLRP-DHITYV 519
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 103/212 (48%), Gaps = 7/212 (3%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75
Y K G + + +P R+ ++W T+I G G + M G P + T
Sbjct: 90 YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTL 149
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135
+V++S + + G+++H+ +VK G +V V +SL++MY++CG + F
Sbjct: 150 TNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVV 209
Query: 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195
D+ W++MIA + G+ + A+ FEQM +++ VT+ S++ + G + ++
Sbjct: 210 RDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGFNQRGYDLRALDI 265
Query: 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227
F M++ P + +T + +L C L++
Sbjct: 266 FSKMLRDSLLSP--DRFT-LASVLSACANLEK 294
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 91 GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGF 150
Q +H V+K+G V ++++L+++YS+ G + K F E W+++++AY
Sbjct: 33 AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92
Query: 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202
G + F+Q+ Q++ V++ +++ + G K + MVK+
Sbjct: 93 RGDMDSTCEFFDQLPQRD----SVSWTTMIVGYKNIGQYHKAIRVMGDMVKE 140
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 111 SSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170
++++S YS+ G +D + + F + D V W++MI Y G+ +AI + M ++ E
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 171 ANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223
T ++L + + E G + +VK R + ++++ +CG
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR-GNVSVSNSLLNMYAKCG 195
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/447 (37%), Positives = 267/447 (59%), Gaps = 24/447 (5%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
+L+L G++L +Y K G + + +V M ++ + W +++AG QN E+ L Y
Sbjct: 194 DLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRR 253
Query: 63 MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122
+ + ++ T SVI +CS LA L +G+Q+HA + K+G +V V SS + MY++CG
Sbjct: 254 AQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGS 313
Query: 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182
L +S F E + ++ LW+++I+ + H + +E + LFE+M+Q N+VTF SLL
Sbjct: 314 LRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSV 373
Query: 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAI 242
C H GL E+G FF LM Y P + HY+C+VD+LGR G L EA LI+++P A
Sbjct: 374 CGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTAS 433
Query: 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302
IW +LL++C+ +K+ ++A AE++ + P++A +VLLSNI+A+ K+W+ +++ R+ +R
Sbjct: 434 IWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLR 493
Query: 303 ERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMH 362
+ +VKK G SW++IK++VH F++G+ HPR EI L+ L + + GY P ++H
Sbjct: 494 DCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELH 553
Query: 363 DMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLPFKYISEIKN----------------- 405
D++ +KE L HSEKLA+ F GL+ + + +KN
Sbjct: 554 DVEIGKKEELLMQHSEKLALVF-----GLMCLPESSPVRIMKNLRICVDCHEFMKAASMA 608
Query: 406 --REIIVRDASRFHHFRNGKCSCGDYW 430
R IIVRD +RFHHF +G CSCGD+W
Sbjct: 609 TRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 4/283 (1%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
E D+ + L + Y K G + +V M R++++W T+I +N + + LD +
Sbjct: 92 LEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFL 151
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
MR GF+ + T SV+S+C + +++H VK L++ V ++L+ +Y++CG
Sbjct: 152 EMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCG 211
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
+ D+V+ F + V WSSM+A Y + EEA+ L+ + ++ E N T S++
Sbjct: 212 MIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC 271
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
ACS+ +G + ++ K + + VD+ +CG L E+ + + K N
Sbjct: 272 ACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEK-NL 329
Query: 242 IIWKTLLSACKTHKSTDMAGRIAEEIL--GVNPQDAAPYVLLS 282
+W T++S H + E++ G++P + LLS
Sbjct: 330 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLS 372
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 94/185 (50%), Gaps = 6/185 (3%)
Query: 78 VISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD 137
++ C+ + + + H ++++ DV +++ LI+ YS+CG ++ + + F
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFD 197
+V W++MI Y + EA+++F +M + F+ ++ T S+L A CG+ +E
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSA---CGVNCDALECKK 183
Query: 198 LMVKKYRRKPRLEHY--TCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255
L + L Y T ++DL +CG + +A + +M K+ ++ W ++++ +K
Sbjct: 184 LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKS-SVTWSSMVAGYVQNK 242
Query: 256 STDMA 260
+ + A
Sbjct: 243 NYEEA 247
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 3/185 (1%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF ++ SS MY K GSL E + + +N+ W T+I+G A++ ++V+ +
Sbjct: 293 GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILF 352
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEV-VKAGASLDVGVISSLISMYSR 119
M+ G P+++TF S++S C + +G++ + G S +V S ++ + R
Sbjct: 353 EKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGR 412
Query: 120 CGCLDDSVKTFLECEYSDVV-LWSSMIAAYGFHGKGEEAINLFEQMEQKEFE-ANDVTFV 177
G L ++ + + +W S++A+ + E A E++ + E E A + +
Sbjct: 413 AGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLL 472
Query: 178 SLLYA 182
S +YA
Sbjct: 473 SNIYA 477
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/446 (37%), Positives = 264/446 (59%), Gaps = 20/446 (4%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
+L +++ Y K G L + + + ++++ W T+I+ ++ ++ L + M
Sbjct: 277 NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC 336
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
G +PD ++ SVIS+C+ L L + + +H+ + G ++ + ++LI+MY++CG LD
Sbjct: 337 CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLD 396
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
+ F + +VV WSSMI A HG+ +A++LF +M+Q+ E N+VTFV +LY CS
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
H GL E+G + F M +Y P+LEHY C+VDL GR L EA +I +MPV +N +IW
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
+L+SAC+ H ++ A+ IL + P VL+SNI+A +RW+ V R M E+
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEK 576
Query: 305 NVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDM 364
NV KE G+S ++ + H+F +GDK H +S EI L+E+ S++KL GYVPD G+ + D+
Sbjct: 577 NVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDV 636
Query: 365 DSEEKEYNLKHHSEKLAIAFA---------EHTRGLIVM-----------LPFKYISEIK 404
+ EEK+ + HSEKLA+ F + + G+I + L FK +S++
Sbjct: 637 EEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVY 696
Query: 405 NREIIVRDASRFHHFRNGKCSCGDYW 430
REIIVRD +RFH ++NG CSC DYW
Sbjct: 697 EREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 124/281 (44%), Gaps = 33/281 (11%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D + MY G + V M R+V+ W T+I + GL ++ + M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC-- 122
PD++ +++S+C + + I+ +++ +D ++++L++MY+ GC
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 123 -----------------------------LDDSVKTFLECEYSDVVLWSSMIAAYGFHGK 153
LDD+ F + E D+V W++MI+AY
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213
+EA+ +FE+M + + V+ S++ AC++ G+ +K ++ + + L
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINN 383
Query: 214 CVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTH 254
++++ +CG LD + MP + N + W ++++A H
Sbjct: 384 ALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMH 423
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 33/255 (12%)
Query: 60 YNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
Y +R VG R D+ +F+ ++ + S+++ L +G ++H K D V + + MY+
Sbjct: 99 YQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYAS 158
Query: 120 CGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179
CG ++ + F E + DVV W++MI Y G +EA LFE+M+ +++ ++
Sbjct: 159 CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI 218
Query: 180 LYACSHCGLKEKGMEFFDL---------------------------MVKKYRRKPRLEHY 212
+ AC G ++ M +++ RK + +
Sbjct: 219 VSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNL 278
Query: 213 ---TCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL- 268
T +V +CG LD+ A +I + K + + W T++SA A R+ EE+
Sbjct: 279 FVSTAMVSGYSKCGRLDD-AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCC 337
Query: 269 -GVNPQDAAPYVLLS 282
G+ P + + ++S
Sbjct: 338 SGIKPDVVSMFSVIS 352
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G E +L ++L +MY K G L V MP RNV++W ++I + +G A D L +
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV-KAGASLDVGVISSLISMYSR 119
M+ P+++TFV V+ CS + +G++I A + + + + ++ ++ R
Sbjct: 434 ARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGR 493
Query: 120 CGCLDDSVKTFLECEY-SDVVLWSSMIAAYGFHGKGE 155
L ++++ S+VV+W S+++A HG+ E
Sbjct: 494 ANLLREALEVIESMPVASNVVIWGSLMSACRIHGELE 530
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 325 bits (834), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 175/448 (39%), Positives = 256/448 (57%), Gaps = 27/448 (6%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
+ ++ +++ Y KSG E ++ R++P++N+ +W LI+G Q+G + + MR
Sbjct: 170 NTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMR 229
Query: 65 MVGFRP-DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123
D + S++ +C+ LA G+Q+H V+ G V + ++LI MY++C +
Sbjct: 230 RERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDV 289
Query: 124 DDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183
+ F + DVV W+S+I HG+ E+A+ L++ M + N+VTFV L+YAC
Sbjct: 290 IAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYAC 349
Query: 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAII 243
SH G EKG E F M K Y +P L+HYTC++DLLGR G LDEA LI MP +
Sbjct: 350 SHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPT 409
Query: 244 WKTLLSACKTHKSTDMAGRIAEEIL-GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302
W LLSACK M RIA+ ++ +D + Y+LLSNI+ASA W VSE R +
Sbjct: 410 WAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLG 469
Query: 303 ERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLR-GYVPDTGADM 361
E V+K+PG S +E++ + F G+ SHP +I L++L EM++R GYVPDT +
Sbjct: 470 EMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWIL 529
Query: 362 HDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYISE 402
HDMD +EKE L HSE+ A+A+ GL+ +P K+ISE
Sbjct: 530 HDMDEQEKEKLLFWHSERSAVAY-----GLLKAVPGTPIRIVKNLRVCGDCHVVLKHISE 584
Query: 403 IKNREIIVRDASRFHHFRNGKCSCGDYW 430
I REIIVRDA+R+HHF+ GKCSC D+W
Sbjct: 585 ITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 8/223 (3%)
Query: 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG- 67
++L ++Y K G+ +V MP R+ IAW +++ Q L+ L ++ +
Sbjct: 41 ANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSG 100
Query: 68 FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127
RPD F +++ +C+ L ++ G+Q+H + + + D V SSL+ MY++CG L+ +
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160
Query: 128 KTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187
F + + W++M++ Y G+ EEA+ LF + K N ++ +L+ G
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWTALISGFVQSG 216
Query: 188 LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230
KG+E F + + R + + + ++G C L + A
Sbjct: 217 ---KGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIA 256
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 15/229 (6%)
Query: 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLW 141
C+ TL + +HA +VK G + ++L+++Y +CG +++ F E + D + W
Sbjct: 13 CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72
Query: 142 SSMIAAYG-FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF-DLM 199
+S++ A + G+ +D F +L+ AC++ G + G + +
Sbjct: 73 ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFI 132
Query: 200 VKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDM 259
V +Y ++ + +VD+ +CG L+ A A+ ++ VK N I W ++S
Sbjct: 133 VSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSGYAK------ 183
Query: 260 AGRIAE--EILGVNPQDA--APYVLLSNIHASAKRWQGVSEFREAMRER 304
+GR E E+ + P + L+S S K + S F E RER
Sbjct: 184 SGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRER 232
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 325 bits (834), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/440 (38%), Positives = 257/440 (58%), Gaps = 15/440 (3%)
Query: 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRM 65
++A +++ + + G + + +V LM R+ W +I + G + LD + M+
Sbjct: 265 VIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQK 324
Query: 66 VGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125
G RP + +S++S C+ LA+L G+Q+HA +V+ DV V S L++MY +CG L
Sbjct: 325 QGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVK 384
Query: 126 SVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185
+ F D+++W+S+I+ Y HG GEEA+ +F +M N VT +++L ACS+
Sbjct: 385 AKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSY 444
Query: 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWK 245
G E+G+E F+ M K+ P +EHY+C VD+LGR G +D+A LI +M +K +A +W
Sbjct: 445 AGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWG 504
Query: 246 TLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305
LL ACKTH D+A A+++ P +A YVLLS+I+AS +W V+ R+ MR N
Sbjct: 505 ALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNN 564
Query: 306 VKKEPGVSWLEIKNQVHQFTMGD-KSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDM 364
V K PG SW+E+ +VH FT G K+HP I + LE+ ++ GY PD +HD+
Sbjct: 565 VSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDV 624
Query: 365 DSEEKEYNLKHHSEKLAIAFA--EHTRGLIVML------------PFKYISEIKNREIIV 410
D EEK +L HSE+LA+A+ + G+ + + K IS++ REII+
Sbjct: 625 DEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIIL 684
Query: 411 RDASRFHHFRNGKCSCGDYW 430
RDA+RFHHF NG+CSC DYW
Sbjct: 685 RDANRFHHFNNGECSCRDYW 704
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 20/249 (8%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
E ++V+ + L Y+K+ +VE V LMP RNV++W ++ G Q G+ + +
Sbjct: 76 ERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWR 135
Query: 63 MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEV-VKAGASLDVGVISSLISMYSRCG 121
M +++++ + + + + ++++ + VK DV +++I R G
Sbjct: 136 MP----ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK-----DVVASTNMIGGLCREG 186
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
+D++ F E +VV W++MI Y + + + A LFE M +K +V++ S+L
Sbjct: 187 RVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLL 242
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
+ G E EFF++M KP + +V G G + +A + M + NA
Sbjct: 243 GYTLSGRIEDAEEFFEVMPM----KPVIACNAMIVG-FGEVGEISKARRVFDLMEDRDNA 297
Query: 242 IIWKTLLSA 250
W+ ++ A
Sbjct: 298 -TWRGMIKA 305
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
F+ D+ S L MY+K G LV+ + V +++I W ++I+G A +GL E+ L ++
Sbjct: 362 FDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFH 421
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEV-VKAGASLDVGVISSLISMYSRC 120
M G P+K+T ++++++CS L +G +I + K + V S + M R
Sbjct: 422 EMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRA 481
Query: 121 GCLDDSVKTFLECEY-SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170
G +D +++ D +W +++ A H + ++L E +K FE
Sbjct: 482 GQVDKAMELIESMTIKPDATVWGALLGACKTHSR----LDLAEVAAKKLFE 528
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 111 SSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170
+ L+S Y + + ++ F +VV W++M+ Y G EA +LF +M ++
Sbjct: 83 NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER--- 139
Query: 171 ANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230
N+V++ + G +K + +D+M K + T ++ L R G +DEA
Sbjct: 140 -NEVSWTVMFGGLIDDGRIDKARKLYDMMPVK-----DVVASTNMIGGLCREGRVDEARL 193
Query: 231 LIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAE 265
+ M + N + W T+++ + + D+A ++ E
Sbjct: 194 IFDEMRER-NVVTWTTMITGYRQNNRVDVARKLFE 227
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 24/204 (11%)
Query: 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173
IS SR G ++++ K F ++ + W+S+++ Y +G +EA LF++M ++ N
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSER----NV 79
Query: 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIR 233
V++ L+ + + F+LM ++ + +T +V + G + EA +L
Sbjct: 80 VSWNGLVSGYIKNRMIVEARNVFELMPER-----NVVSWTAMVKGYMQEGMVGEAESLFW 134
Query: 234 NMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG 293
MP + N + W + D A ++ + + V +N+ R
Sbjct: 135 RMPER-NEVSWTVMFGGLIDDGRIDKARKLYDMM------PVKDVVASTNMIGGLCREGR 187
Query: 294 VSEFR---EAMRERNVKKEPGVSW 314
V E R + MRERNV V+W
Sbjct: 188 VDEARLIFDEMRERNV-----VTW 206
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 161/444 (36%), Positives = 260/444 (58%), Gaps = 14/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF ++ A +L +MY K G ++ ++V +N+ T++ Q+ E+ L+ +
Sbjct: 267 GFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLF 326
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ M P++ TF +++S +EL+ L QG +H V+K+G V V ++L++MY++
Sbjct: 327 SKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKS 386
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++D+ K F + D+V W++MI+ HG G EA+ F++M N +TF+ +L
Sbjct: 387 GSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVL 446
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH G E+G+ +F+ ++KK+ +P ++HYTC+V LL + G +A +R P++ +
Sbjct: 447 QACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWD 506
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+ W+TLL+AC ++ + ++AE + P D+ YVLLSNIHA ++ W+GV++ R
Sbjct: 507 VVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSL 566
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M R VKKEPGVSW+ I+NQ H F D HP I ++E+ S++K GY PD
Sbjct: 567 MNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGA 626
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA----EHTRGLIVM----------LPFKYISEIKNR 406
HD+D E++E NL +HSEKLA+A+ L V K IS+I R
Sbjct: 627 FHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKR 686
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
I++RD++RFHHF +G+CSC DYW
Sbjct: 687 YIVIRDSNRFHHFLDGQCSCCDYW 710
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 135/278 (48%), Gaps = 5/278 (1%)
Query: 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG-F 68
+SL ++Y+K V K+ LMP RNV++W ++ G +G +VL + M G
Sbjct: 73 NSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGES 132
Query: 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128
RP++ V SCS + +G+Q H +K G V ++L+ MYS C ++++
Sbjct: 133 RPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIR 192
Query: 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188
+ Y D+ ++SS ++ Y G +E +++ + ++F N++T++S L S+
Sbjct: 193 VLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRD 252
Query: 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
++ MV ++ +E ++++ G+CG + A + + + N + T++
Sbjct: 253 LNLALQVHSRMV-RFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQ-NIFLNTTIM 310
Query: 249 SACKTHKSTDMAGRIAEEILG--VNPQDAAPYVLLSNI 284
A KS + A + ++ V P + +LL++I
Sbjct: 311 DAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSI 348
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 123/246 (50%), Gaps = 4/246 (1%)
Query: 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR 69
++L +MY E +V+ +P ++ + + ++G + G ++ LD F
Sbjct: 175 NTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFV 234
Query: 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKT 129
+ +T++S + S L L Q+H+ +V+ G + +V +LI+MY +CG + + +
Sbjct: 235 WNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRV 294
Query: 130 FLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189
F + ++ L ++++ AY EEA+NLF +M+ KE N+ TF LL + + L
Sbjct: 295 FDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLL 354
Query: 190 EKGMEFFDLMVKK-YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
++G L++K YR + + +V++ + G +++A M + + + W T++
Sbjct: 355 KQGDLLHGLVLKSGYRNHVMVGN--ALVNMYAKSGSIEDARKAFSGMTFR-DIVTWNTMI 411
Query: 249 SACKTH 254
S C H
Sbjct: 412 SGCSHH 417
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 164/452 (36%), Positives = 268/452 (59%), Gaps = 22/452 (4%)
Query: 1 GFELDLVAGSSLAH----MYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDV 56
F+ L + SS+A+ M++KS + + ++ + +N++++ T + G +N E
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQA 458
Query: 57 LDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116
+ + TF S++S + + ++ +G+QIH++VVK G S + V ++LISM
Sbjct: 459 FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISM 518
Query: 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176
YS+CG +D + + F E +V+ W+SMI + HG + F QM ++ + N+VT+
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578
Query: 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236
V++L ACSH GL +G F+ M + ++ KP++EHY C+VDLL R G L +A I MP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638
Query: 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296
+A+ ++W+T L AC+ H +T++ A +IL ++P + A Y+ LSNI+A A +W+ +E
Sbjct: 639 FQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTE 698
Query: 297 FREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPD 356
R M+ERN+ KE G SW+E+ +++H+F +GD +HP + +I L+ L +E+K GYVPD
Sbjct: 699 MRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPD 758
Query: 357 TGADMHDMDSEEKEYN----LKHHSEKLAIAFA----EHTRGLIVML----------PFK 398
T +H ++ E E L HSEK+A+AF +R + V K
Sbjct: 759 TDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMK 818
Query: 399 YISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
YIS + REI++RD +RFHHF++GKCSC DYW
Sbjct: 819 YISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 95/190 (50%), Gaps = 8/190 (4%)
Query: 2 FELDLVAGSSLAHMYMKS-GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
FE D+ G SL M++K S KV M NV+ W +I Q G + + +
Sbjct: 198 FESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFF 257
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M + GF DK T SV S+C+EL L G+Q+H+ +++G DV SL+ MY++C
Sbjct: 258 LDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKC 315
Query: 121 ---GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGK-GEEAINLFEQM-EQKEFEANDVT 175
G +DD K F E V+ W+++I Y + EAINLF +M Q E N T
Sbjct: 316 SADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFT 375
Query: 176 FVSLLYACSH 185
F S AC +
Sbjct: 376 FSSAFKACGN 385
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 61 NLMRMVGFRP-DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
+LM G RP D +TF S++ SC G+ +HA +++ D + +SLIS+YS+
Sbjct: 50 DLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSK 109
Query: 120 CG---CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176
G +D +T DVV WS+M+A YG +G+ +AI +F + + ND +
Sbjct: 110 SGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCY 169
Query: 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCV----VDLLGRCGYLDEAAALI 232
+++ ACS+ G ++K E CV +D+ + E A +
Sbjct: 170 TAVIRACSNSDFVGVGRVTLGFLMK----TGHFESDVCVGCSLIDMFVKGENSFENAYKV 225
Query: 233 RNMPVKANAIIWKTLLSAC 251
+ + N + W +++ C
Sbjct: 226 FDKMSELNVVTWTLMITRC 244
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 5/187 (2%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKV---IRLMPIRNVIAWITLIAGKAQNGLAEDVLDQ 59
E D V +SL +Y KSG + E V +R R+V++W ++A NG D +
Sbjct: 94 EPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKV 153
Query: 60 YNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAG-ASLDVGVISSLISMYS 118
+ +G P+ + +VI +CS +G G+ ++K G DV V SLI M+
Sbjct: 154 FVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFV 213
Query: 119 RC-GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177
+ +++ K F + +VV W+ MI G EAI F M FE++ T
Sbjct: 214 KGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLS 273
Query: 178 SLLYACS 184
S+ AC+
Sbjct: 274 SVFSACA 280
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 321 bits (823), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 164/448 (36%), Positives = 259/448 (57%), Gaps = 25/448 (5%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
E D V+ +S+ Y+K+G + + R M +N I+W T+I+G Q + ++ L ++
Sbjct: 178 EPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHE 237
Query: 63 MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122
M+ PD ++ + +S+C++L L QG+ IH+ + K +D + LI MY++CG
Sbjct: 238 MQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGE 297
Query: 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182
++++++ F + V W+++I+ Y +HG G EAI+ F +M++ + N +TF ++L A
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357
Query: 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAI 242
CS+ GL E+G F M + Y KP +EHY C+VDLLGR G LDEA I+ MP+K NA+
Sbjct: 358 CSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417
Query: 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302
IW LL AC+ HK+ ++ I E ++ ++P YV +NIHA K+W +E R M+
Sbjct: 418 IWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMK 477
Query: 303 ERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMH 362
E+ V K PG S + ++ H+F GD+SHP +I + +++ GYVP+ +
Sbjct: 478 EQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLL 537
Query: 363 DM-DSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKYISE 402
D+ D +E+E + HSEKLAI + GLI P K IS+
Sbjct: 538 DLVDDDEREAIVHQHSEKLAITY-----GLIKTKPGTIIRIMKNLRVCKDCHKVTKLISK 592
Query: 403 IKNREIIVRDASRFHHFRNGKCSCGDYW 430
I R+I++RD +RFHHFR+GKCSCGDYW
Sbjct: 593 IYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 132/309 (42%), Gaps = 43/309 (13%)
Query: 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95
+ W +I G + + E L Y M + TF S++ +CS L+ + QIH
Sbjct: 79 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138
Query: 96 AEVVKAGASLDVGVISSLISMYS-------------------------------RCGCLD 124
A++ K G DV ++SLI+ Y+ + G +D
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 198
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
++ F + + + W++MI+ Y +EA+ LF +M+ + E ++V+ + L AC+
Sbjct: 199 IALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACA 258
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYT---CV-VDLLGRCGYLDEAAALIRNMPVKAN 240
G E+G + Y K R+ + CV +D+ +CG ++EA + +N+ K +
Sbjct: 259 QLGALEQGK-----WIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKS 312
Query: 241 AIIWKTLLS--ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFR 298
W L+S A H ++ + + +G+ P +L+ + +G F
Sbjct: 313 VQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372
Query: 299 EAMRERNVK 307
R+ N+K
Sbjct: 373 SMERDYNLK 381
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLE--- 132
+S + CS+ L +QIHA ++K G D I+ +S C+ + FL
Sbjct: 18 MSCLQRCSKQEEL---KQIHARMLKTGLMQDSYAITKFLSF-----CISSTSSDFLPYAQ 69
Query: 133 -----CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS--- 184
+ D LW+ MI + + E ++ L+++M N TF SLL ACS
Sbjct: 70 IVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLS 129
Query: 185 --------HCGLKEKGME-----------------FFDLMVKKYRRKPRLE--HYTCVVD 217
H + + G E F L + R P + + V+
Sbjct: 130 AFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIK 189
Query: 218 LLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250
+ G +D A L R M K NAI W T++S
Sbjct: 190 GYVKAGKMDIALTLFRKMAEK-NAISWTTMISG 221
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 321 bits (823), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 178/448 (39%), Positives = 252/448 (56%), Gaps = 24/448 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GFE L + +SL MY++ + + +V + + N ++W +LI+G QNG E L ++
Sbjct: 297 GFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEF 356
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M +P+ T S + CS LA +G+QIH V K G D S LI +Y +C
Sbjct: 357 RKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKC 416
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
GC D + F DV+ ++MI +Y +G G EA++LFE+M + NDVT +S+L
Sbjct: 417 GCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVL 476
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRL----EHYTCVVDLLGRCGYLDEAAALIRNMP 236
AC++ L E+G E FD RK ++ +HY C+VDLLGR G L+EA L +
Sbjct: 477 LACNNSRLVEEGCELFDSF-----RKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEV- 530
Query: 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296
+ + ++W+TLLSACK H+ +MA RI +IL + P D +L+SN++AS +W V E
Sbjct: 531 INPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIE 590
Query: 297 FREAMRERNVKKEPGVSWLEIKNQVHQFTMGDK-SHPRSMEIDLYLEELTSEMKLRGYVP 355
+ M++ +KK P +SW+EI + H F GD SHP S +I LEEL + K GYV
Sbjct: 591 MKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVE 650
Query: 356 DTGADMHDMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVMLP-----------FKYISE 402
D DM+ KE +L HSEKLAIAFA + G I +L K +S
Sbjct: 651 DKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGGSIRILKNLRVCVDCHSWIKIVSR 710
Query: 403 IKNREIIVRDASRFHHFRNGKCSCGDYW 430
+ REII RD+ RFHHFR+G CSCGDYW
Sbjct: 711 VMKREIICRDSKRFHHFRDGSCSCGDYW 738
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 146/286 (51%), Gaps = 9/286 (3%)
Query: 1 GFEL-DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQ 59
G E+ ++ GS+L MY+K G E + V+ + ++V+ LI G +Q G + +
Sbjct: 195 GLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKA 254
Query: 60 YNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
+ M + +P++ T+ SV+ SC L +G G+ IH +VK+G + +SL++MY R
Sbjct: 255 FQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLR 314
Query: 120 CGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179
C +DDS++ F EY + V W+S+I+ +G+ E A+ F +M + + N T S
Sbjct: 315 CSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSA 374
Query: 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
L CS+ + E+G + + V KY + ++DL G+CG D A L+ + +
Sbjct: 375 LRGCSNLAMFEEGRQIHGI-VTKYGFDRDKYAGSGLIDLYGKCGCSD-MARLVFDTLSEV 432
Query: 240 NAIIWKTLLSACKTH----KSTDMAGRIAEEILGVNPQDAAPYVLL 281
+ I T++ + + ++ D+ R+ LG+ P D +L
Sbjct: 433 DVISLNTMIYSYAQNGFGREALDLFERMIN--LGLQPNDVTVLSVL 476
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 124/255 (48%), Gaps = 3/255 (1%)
Query: 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV 66
++GS L +K G + +V M R+++ W +LIA ++ +++ ++ Y LM
Sbjct: 100 ISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITN 159
Query: 67 GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASL-DVGVISSLISMYSRCGCLDD 125
PD+ T SV + S+L+ + Q+ H V G + +V V S+L+ MY + G +
Sbjct: 160 NVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTRE 219
Query: 126 SVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185
+ E DVVL +++I Y G+ EA+ F+ M ++ + N+ T+ S+L +C +
Sbjct: 220 AKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGN 279
Query: 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWK 245
G LMVK + L T ++ + RC +D++ + + + N + W
Sbjct: 280 LKDIGNGKLIHGLMVKS-GFESALASQTSLLTMYLRCSLVDDSLRVFKCIEY-PNQVSWT 337
Query: 246 TLLSACKTHKSTDMA 260
+L+S + +MA
Sbjct: 338 SLISGLVQNGREEMA 352
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 321 bits (823), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 174/452 (38%), Positives = 268/452 (59%), Gaps = 22/452 (4%)
Query: 1 GFELDLVAGSSLAHMYMKSGS---LVEGEKVIRLMPIRNVIAWITLIAGKAQNG-LAEDV 56
GF + GS L Y K G + + EKV + + +++ W T+I+G + N L+E+
Sbjct: 270 GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEA 329
Query: 57 LDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAG-ASLDVGVISSLIS 115
+ + M+ +G RPD +FV V S+CS L++ Q +QIH +K+ S + V ++LIS
Sbjct: 330 VKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALIS 389
Query: 116 MYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVT 175
+Y + G L D+ F + V ++ MI Y HG G EA+ L+++M N +T
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKIT 449
Query: 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235
FV++L AC+HCG ++G E+F+ M + ++ +P EHY+C++DLLGR G L+EA I M
Sbjct: 450 FVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAM 509
Query: 236 PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295
P K ++ W LL AC+ HK+ +A R A E++ + P A PYV+L+N++A A++W+ ++
Sbjct: 510 PYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMA 569
Query: 296 EFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVP 355
R++MR + ++K+PG SW+E+K + H F D SHP E++ YLEE+ +MK GYV
Sbjct: 570 SVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVM 629
Query: 356 DTGADM---HDMDSEEKEYNLKHHSEKLAIAFA-EHTRG---LIVML----------PFK 398
D M + ++E L HHSEKLA+AF TR L+V+ K
Sbjct: 630 DKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIK 689
Query: 399 YISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
++S + REIIVRD RFH F++GKCSCGDYW
Sbjct: 690 FMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 10/317 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLM-PIRNVIAWITLIAGKAQNGLAEDVLDQ 59
GF+ ++ Y K G L E V M +R+ ++W ++I Q+ L
Sbjct: 168 GFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALAL 227
Query: 60 YNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119
Y M GF+ D T SV+++ + L L G+Q H +++KAG + V S LI YS+
Sbjct: 228 YKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSK 287
Query: 120 CGCLD---DSVKTFLECEYSDVVLWSSMIAAYGFHGK-GEEAINLFEQMEQKEFEANDVT 175
CG D DS K F E D+V+W++MI+ Y + + EEA+ F QM++ +D +
Sbjct: 288 CGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCS 347
Query: 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235
FV + ACS+ + + L +K + R+ ++ L + G L +A + M
Sbjct: 348 FVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRM 407
Query: 236 PVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQG 293
P + NA+ + ++ H A + + +L G+ P +LS K +G
Sbjct: 408 P-ELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEG 466
Query: 294 VSEFREAMRERNVKKEP 310
E+ M+E K EP
Sbjct: 467 -QEYFNTMKE-TFKIEP 481
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 122/253 (48%), Gaps = 10/253 (3%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
E ++ + + + Y K + ++ +P + +++ TLI+G A + +
Sbjct: 71 EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKR 130
Query: 63 MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122
MR +GF D T +I++C + L +Q+H V G V ++ ++ YS+ G
Sbjct: 131 MRKLGFEVDGFTLSGLIAACCDRVDL--IKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGL 188
Query: 123 LDDSVKTFLEC-EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
L ++V F E D V W+SMI AYG H +G +A+ L+++M K F+ + T S+L
Sbjct: 189 LREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLN 248
Query: 182 ACSHCGLKEKGMEFFDLMVKK-YRRKPRLEHYTCVVDLLGRCGYLD---EAAALIRNMPV 237
A + G +F ++K + + + + ++D +CG D ++ + + + +
Sbjct: 249 ALTSLDHLIGGRQFHGKLIKAGFHQNSHVG--SGLIDFYSKCGGCDGMYDSEKVFQEI-L 305
Query: 238 KANAIIWKTLLSA 250
+ ++W T++S
Sbjct: 306 SPDLVVWNTMISG 318
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 52/221 (23%)
Query: 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAA 147
L G+ +HA VK+ + + + +++YS+CG L + F E +V ++ ++ A
Sbjct: 24 LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKA 83
Query: 148 YGFHGKGEEAINLFEQMEQKE-------------------------------FEANDVTF 176
Y K A LF+++ Q + FE + T
Sbjct: 84 YAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTL 143
Query: 177 VSLLYACS---------HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227
L+ AC HC G + + + + V + G L E
Sbjct: 144 SGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAF------------VTYYSKGGLLRE 191
Query: 228 AAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL 268
A ++ M + + W +++ A HK A + +E++
Sbjct: 192 AVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMI 232
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 321 bits (822), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 169/444 (38%), Positives = 258/444 (58%), Gaps = 15/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + ++ +SL MY K + + + R +++W +I G AQNG D L+ +
Sbjct: 367 GLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYF 426
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ MR +PD T+VSVI++ +EL+ + IH V+++ +V V ++L+ MY++C
Sbjct: 427 SQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKC 486
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + + F V W++MI YG HG G+ A+ LFE+M++ + N VTF+S++
Sbjct: 487 GAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVI 546
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH GL E G++ F +M + Y + ++HY +VDLLGR G L+EA I MPVK
Sbjct: 547 SACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPA 606
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
++ +L AC+ HK+ + A + AE + +NP D +VLL+NI+ +A W+ V + R +
Sbjct: 607 VNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVS 666
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M + ++K PG S +EIKN+VH F G +HP S +I +LE+L +K GYVPDT
Sbjct: 667 MLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLV 726
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVML------------PFKYISEIKNR 406
+ ++++ KE L HSEKLAI+F T G + + KYIS + R
Sbjct: 727 L-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGR 785
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EI+VRD RFHHF+NG CSCGDYW
Sbjct: 786 EIVVRDMQRFHHFKNGACSCGDYW 809
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 132/248 (53%), Gaps = 2/248 (0%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF LDL A + L +MY K + E KV MP R++++W T++AG +QNG+A L+
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M +P IT VSV+ + S L + G++IH +++G V + ++L+ MY++C
Sbjct: 225 KSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKC 284
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G L+ + + F +VV W+SMI AY + +EA+ +F++M + + DV+ + L
Sbjct: 285 GSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGAL 344
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
+AC+ G E+G F + + + ++ + +C +D AA++ + +
Sbjct: 345 HACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR-T 402
Query: 241 AIIWKTLL 248
+ W ++
Sbjct: 403 LVSWNAMI 410
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 134/267 (50%), Gaps = 2/267 (0%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF+ + ++L MY K GSL ++ M RNV++W ++I QN ++ + +
Sbjct: 266 GFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIF 325
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M G +P ++ + + +C++L L +G+ IH V+ G +V V++SLISMY +C
Sbjct: 326 QKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKC 385
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
+D + F + + +V W++MI + +G+ +A+N F QM + + + T+VS++
Sbjct: 386 KEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVI 445
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
A + + ++++ K + T +VD+ +CG + A LI +M + +
Sbjct: 446 TAIAELSITHHAKWIHGVVMRSCLDK-NVFVTTALVDMYAKCGAI-MIARLIFDMMSERH 503
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEI 267
W ++ TH A + EE+
Sbjct: 504 VTTWNAMIDGYGTHGFGKAALELFEEM 530
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 15/285 (5%)
Query: 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR 69
+ L ++ + GS+ E +V + + + + T++ G A+ + L + MR
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKT 129
P F ++ C + A L G++IH +VK+G SLD+ ++ L +MY++C ++++ K
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 130 FLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189
F D+V W++++A Y +G A+ + + M ++ + + +T VS+L A S L
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 190 EKGMEFFDLMVKKYRRKPRLEHY----TCVVDLLGRCGYLDEAAALIRNMPVKANAIIWK 245
G E + Y + + T +VD+ +CG L+ A L M ++ N + W
Sbjct: 253 SVGKE-----IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWN 306
Query: 246 TLLSACKTHKSTDMAGRIAEEIL--GVNPQDAAPYVLLSNIHASA 288
+++ A +++ A I +++L GV P D + ++ +HA A
Sbjct: 307 SMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS---VMGALHACA 348
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 258/445 (57%), Gaps = 15/445 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF+LD+ ++L +Y K + K+ + +N ++W T+I G G +
Sbjct: 378 GFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMF 437
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
++TF S + +C+ LA++ G Q+H +K + V V +SLI MY++C
Sbjct: 438 REALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKC 497
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + + F E E DV W+++I+ Y HG G +A+ + + M+ ++ + N +TF+ +L
Sbjct: 498 GDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVL 557
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
CS+ GL ++G E F+ M++ + +P LEHYTC+V LLGR G LD+A LI +P + +
Sbjct: 558 SGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPS 617
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+IW+ +LSA + + A R AEEIL +NP+D A YVL+SN++A AK+W V+ R++
Sbjct: 618 VMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKS 677
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E VKKEPG+SW+E + VH F++G HP I+ LE L + GYVPD A
Sbjct: 678 MKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAV 737
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA----EHTRGLIVML-----------PFKYISEIKN 405
+ DMD EEK+ L HSE+LA+A+ +R I+++ K IS I
Sbjct: 738 LLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQ 797
Query: 406 REIIVRDASRFHHFRNGKCSCGDYW 430
R++++RD +RFHHF G CSCGD+W
Sbjct: 798 RDLVIRDMNRFHHFHAGVCSCGDHW 822
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 150/315 (47%), Gaps = 14/315 (4%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
+ LD G L +Y + G + + KV MP +V+ W +IA QNG + +D +
Sbjct: 278 YVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFI 337
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
MR P++ T S+++ C+ G G+Q+H VVK G LD+ V ++LI +Y++C
Sbjct: 338 RMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCE 397
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
+D +VK F E + V W+++I Y G+G +A ++F + + + +VTF S L
Sbjct: 398 KMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALG 457
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
AC+ + G++ L +K K ++ ++D+ +CG + A ++ M +
Sbjct: 458 ACASLASMDLGVQVHGLAIKTNNAK-KVAVSNSLIDMYAKCGDIKFAQSVFNEMET-IDV 515
Query: 242 IIWKTLLSACKTHKSTDMAGRIAEEILGV-NPQDAAPYVL-----LSNIHASAKRWQGVS 295
W L+S TH GR A IL + +D P L LS + QG
Sbjct: 516 ASWNALISGYSTHG----LGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQE 571
Query: 296 EFREAMRERNVKKEP 310
F +R+ + EP
Sbjct: 572 CFESMIRDHGI--EP 584
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 6/250 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G++ + G++L + Y GS+ V + ++++ W +++ +NG ED L
Sbjct: 176 GYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLL 235
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ MRM GF P+ TF + + + L + +H +++K LD V L+ +Y++
Sbjct: 236 SCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQL 295
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + D+ K F E +DVV WS MIA + +G EA++LF +M + N+ T S+L
Sbjct: 296 GDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSIL 355
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY--TCVVDLLGRCGYLDEAAALIRNMPVK 238
C+ G + L+VK L+ Y ++D+ +C +D A L + K
Sbjct: 356 NGCAIGKCSGLGEQLHGLVVKV---GFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSK 412
Query: 239 ANAIIWKTLL 248
N + W T++
Sbjct: 413 -NEVSWNTVI 421
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 114/250 (45%), Gaps = 8/250 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G LDL A + L + Y+K+G + + MP RN ++++TL G A +D + Y
Sbjct: 79 GSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLY 134
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ + G + F S + L +H+ +VK G + V ++LI+ YS C
Sbjct: 135 SRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVC 194
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G +D + F D+V+W+ +++ Y +G E+++ L M F N+ TF + L
Sbjct: 195 GSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTAL 254
Query: 181 YACSHCGLKEKGMEFFDLMVKK-YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
A G + ++K Y PR+ ++ L + G + +A + MP K
Sbjct: 255 KASIGLGAFDFAKGVHGQILKTCYVLDPRVG--VGLLQLYTQLGDMSDAFKVFNEMP-KN 311
Query: 240 NAIIWKTLLS 249
+ + W +++
Sbjct: 312 DVVPWSFMIA 321
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTF 130
D + +++ C + + IH +++K G+ LD+ + L++ Y + G D++ F
Sbjct: 48 DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107
Query: 131 LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
E + V + ++ Y ++ I L+ ++ ++ E N F S L
Sbjct: 108 DEMPERNNVSFVTLAQGYAC----QDPIGLYSRLHREGHELNPHVFTSFL 153
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 318 bits (816), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 248/409 (60%), Gaps = 14/409 (3%)
Query: 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95
NV++W ++IAG AQNG + L+ + M++ G +P+ +T S++ +C +A LG G+ H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGE 155
V+ +V V S+LI MY++CG ++ S F ++V W+S++ + HGK +
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAK 471
Query: 156 EAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCV 215
E +++FE + + + + ++F SLL AC GL ++G ++F +M ++Y KPRLEHY+C+
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCM 531
Query: 216 VDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275
V+LLGR G L EA LI+ MP + ++ +W LL++C+ + D+A AE++ + P++
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 276 APYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSM 335
YVLLSNI+A+ W V R M +KK PG SW+++KN+V+ GDKSHP+
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQID 651
Query: 336 EIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKHHSEKLAIAFA---------- 385
+I ++E++ EM+ G+ P+ +HD++ +E+E L HSEKLA+ F
Sbjct: 652 QITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711
Query: 386 EHTRGLIVM----LPFKYISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
+ + L + K+IS REI +RD +RFHHF++G CSCGD+W
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 137/303 (45%), Gaps = 41/303 (13%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIR----NVIAWITLIAGKAQNGLAEDVLDQY 60
D+V S+L Y + G L E +++ M N+++W +++G ++G ++ + +
Sbjct: 181 DVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMF 240
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY--- 117
+ +GF PD++T SV+ S + L G+ IH V+K G D VIS++I MY
Sbjct: 241 QKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKS 300
Query: 118 ----------------------------SRCGCLDDSVKTF-LECEYS---DVVLWSSMI 145
SR G +D +++ F L E + +VV W+S+I
Sbjct: 301 GHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSII 360
Query: 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRR 205
A +GK EA+ LF +M+ + N VT S+L AC + G V+ +
Sbjct: 361 AGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLL 420
Query: 206 KPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAE 265
+ + ++D+ +CG ++ + + MP K N + W +L++ H I E
Sbjct: 421 D-NVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAKEVMSIFE 478
Query: 266 EIL 268
++
Sbjct: 479 SLM 481
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + D + L Y + + V++ +P + ++ +LI + L + +
Sbjct: 45 GAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVF 104
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ M G PD ++ C+EL+ G+QIH +G +D V S+ MY RC
Sbjct: 105 SRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRC 164
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G + D+ K F DVV S+++ AY G EE + + +ME EAN V++ +L
Sbjct: 165 GRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGIL 224
Query: 181 YACSHCGLKEKGMEFF 196
+ G ++ + F
Sbjct: 225 SGFNRSGYHKEAVVMF 240
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 33/175 (18%)
Query: 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF 68
GS+L MY K G + + V +MP +N++ W +L+ G + +G A++V+ + +
Sbjct: 426 GSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRL 485
Query: 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128
+PD I+F S++S+C ++ +G + Y + + +K
Sbjct: 486 KPDFISFTSLLSACGQVGLTDEGWK-----------------------YFKMMSEEYGIK 522
Query: 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183
LE +S M+ G GK +EA +L ++M FE + + +LL +C
Sbjct: 523 PRLE-------HYSCMVNLLGRAGKLQEAYDLIKEM---PFEPDSCVWGALLNSC 567
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 33/191 (17%)
Query: 93 QIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHG 152
Q HA ++K+GA D + + LI+ YS C +D+ + +SS+I A
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACS-----------HCGLKEKGMEFFDL--- 198
++I +F +M + +L C+ HC G++
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155
Query: 199 -MVKKYRRKPRLEHYTCVVDLL---------------GRCGYLDEAAALIRNMP---VKA 239
M Y R R+ V D + R G L+E ++ M ++A
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215
Query: 240 NAIIWKTLLSA 250
N + W +LS
Sbjct: 216 NIVSWNGILSG 226
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 263/442 (59%), Gaps = 18/442 (4%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D V +++ + G +V K+ MP R+ IAW +I+G AQ G + + L+ ++LM+
Sbjct: 173 DFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQ 232
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
+ G + + + +SV+S+C++L L QG+ H+ + + + V + ++L+ +Y++CG ++
Sbjct: 233 LEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDME 292
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
+++ F E +V WSS + +G GE+ + LF M+Q N VTFVS+L CS
Sbjct: 293 KAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCS 352
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
G ++G FD M ++ +P+LEHY C+VDL R G L++A ++I+ MP+K +A +W
Sbjct: 353 VVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVW 412
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304
+LL A + +K+ ++ ++++L + + YVLLSNI+A + W VS R++M+ +
Sbjct: 413 SSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSK 472
Query: 305 NVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDM 364
V+K+PG S +E+ +VH+F +GDKSHP+ +ID ++++ ++L GY DT M D+
Sbjct: 473 GVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDI 532
Query: 365 DSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLPFK----------------YISEIKNREI 408
D EEKE L HSEK AIAF L +P + IS+I NREI
Sbjct: 533 DEEEKEDALCLHSEKAAIAFG--IMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREI 590
Query: 409 IVRDASRFHHFRNGKCSCGDYW 430
IVRD +RFHHF++G CSC +W
Sbjct: 591 IVRDRNRFHHFKDGHCSCNGFW 612
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 35/248 (14%)
Query: 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG--FRPDKITFVSVISSCSELATLGQGQQ 93
+ A ++I ++ + E D Y + G +PD T ++ +C+ L G Q
Sbjct: 70 TLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQ 129
Query: 94 IHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTF-------LECEYS---------- 136
+H ++ G D V + LIS+Y+ GCLD K F C +
Sbjct: 130 VHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGD 189
Query: 137 --------------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182
D + W++MI+ Y G+ EA+N+F M+ + + N V +S+L A
Sbjct: 190 VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSA 249
Query: 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAI 242
C+ G ++G + +++ + K + T +VDL +CG +++A + M K N
Sbjct: 250 CTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEK-NVY 307
Query: 243 IWKTLLSA 250
W + L+
Sbjct: 308 TWSSALNG 315
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 315 bits (807), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 257/450 (57%), Gaps = 26/450 (5%)
Query: 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYN 61
++ + GSSL MY K+G + E ++ +P R+V++ +IAG AQ GL E+ L+ ++
Sbjct: 184 YDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFH 243
Query: 62 LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
+ G P+ +T+ S++++ S LA L G+Q H V++ + +SLI MYS+CG
Sbjct: 244 RLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCG 303
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM-EQKEFEANDVTFVSLL 180
L + + F + W++M+ Y HG G E + LF M ++K + + VT +++L
Sbjct: 304 NLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVL 363
Query: 181 YACSHCGLKEKGMEFFDLMVK-KYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
CSH +++ G+ FD MV +Y KP EHY C+VD+LGR G +DEA I+ MP K
Sbjct: 364 SGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKP 423
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
A + +LL AC+ H S D+ + ++ + P++A YV+LSN++ASA RW V+ R
Sbjct: 424 TAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRA 483
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
M ++ V KEPG SW++ + +H F D++HPR E+ ++E++ +MK GYVPD
Sbjct: 484 MMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSC 543
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVM---LPF----------------KYI 400
++D+D E+KE L HSEKLA+ F GLI +P K
Sbjct: 544 VLYDVDEEQKEKMLLGHSEKLALTF-----GLIATGEGIPIRVFKNLRICVDCHNFAKIF 598
Query: 401 SEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
S++ RE+ +RD +RFH +G CSCGDYW
Sbjct: 599 SKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 10/243 (4%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75
Y K L + KV+ MP +NV++W +I+ +Q G + + L + M +P++ TF
Sbjct: 97 YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTF 156
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135
+V++SC + LG G+QIH +VK + V SSL+ MY++ G + ++ + F
Sbjct: 157 ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPE 216
Query: 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195
DVV +++IA Y G EEA+ +F ++ + N VT+ SLL A S L + G +
Sbjct: 217 RDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQA 276
Query: 196 FDLMVKKYRRKPRLEHYTC----VVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSAC 251
++++ L Y ++D+ +CG L A L NMP + AI W +L
Sbjct: 277 HCHVLRR-----ELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER-TAISWNAMLVGY 330
Query: 252 KTH 254
H
Sbjct: 331 SKH 333
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 10/216 (4%)
Query: 33 PIRNVIAWITLIAGKAQNG-LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91
P V+ I I+ NG L E +L+ L +GF + +++++C + L G
Sbjct: 16 PTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFH----GYDALLNACLDKRALRDG 71
Query: 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH 151
Q++HA ++K + + L+ Y +C CL+D+ K E +VV W++MI+ Y
Sbjct: 72 QRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQT 131
Query: 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEH 211
G EA+ +F +M + + + N+ TF ++L +C G + L+V K+ +
Sbjct: 132 GHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIV-KWNYDSHIFV 190
Query: 212 YTCVVDLLGRCGYLDEAAALIRNMP----VKANAII 243
+ ++D+ + G + EA + +P V AII
Sbjct: 191 GSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAII 226
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 315 bits (806), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 265/464 (57%), Gaps = 40/464 (8%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF D+ + L H+Y G L KV MP R++++W ++I + G + L +
Sbjct: 181 GFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF 240
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK---AGASLDVGVISSLISMY 117
M+ F PD T SV+S+C+ L +L G HA +++ ++DV V +SLI MY
Sbjct: 241 REMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMY 299
Query: 118 SRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM--EQKEFEANDVT 175
+CG L + + F + D+ W++MI + HG+ EEA+N F++M +++ N VT
Sbjct: 300 CKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVT 359
Query: 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235
FV LL AC+H G KG ++FD+MV+ Y +P LEHY C+VDL+ R GY+ EA ++ +M
Sbjct: 360 FVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSM 419
Query: 236 PVKANAIIWKTLLSA-CKTHKSTDMAGRIAEEILGV-------NPQDAAPYVLLSNIHAS 287
P+K +A+IW++LL A CK S +++ IA I+G N + YVLLS ++AS
Sbjct: 420 PMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYAS 479
Query: 288 AKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSE 347
A RW V R+ M E ++KEPG S +EI H+F GD SHP++ +I L+ +
Sbjct: 480 ASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDR 539
Query: 348 MKLRGYVPD-TGADMHDMDSE-EKEYNLKHHSEKLAIAFAEHTRGLIVMLP--------- 396
++ GY+PD + A + D ++ KEY+L+ HSE+LAIAF GLI + P
Sbjct: 540 LRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAF-----GLINLPPQTPIRIFKN 594
Query: 397 ----------FKYISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
K IS++ N EIIVRD RFHHF++G CSC DYW
Sbjct: 595 LRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 6/225 (2%)
Query: 40 WITLIAGKAQN-GLAEDVLDQYNLMRMVG-FRPDKITFVSVISSCSELATLGQGQQIHAE 97
W TLI A + E+ Y M G PDK TF V+ +C+ + +G+Q+H +
Sbjct: 117 WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQ 176
Query: 98 VVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEA 157
+VK G DV V + LI +Y CGCLD + K F E +V W+SMI A G+ + A
Sbjct: 177 IVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 236
Query: 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY--TCV 215
+ LF +M Q+ FE + T S+L AC+ G G +++K ++ +
Sbjct: 237 LQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSL 295
Query: 216 VDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMA 260
+++ +CG L A + + M K + W ++ TH + A
Sbjct: 296 IEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEA 339
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 314 bits (805), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 175/445 (39%), Positives = 246/445 (55%), Gaps = 17/445 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF + +SL Y + + KV V W L++G + N ED L +
Sbjct: 255 GFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIF 314
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ M P++ TF S ++SCS L TL G+++H VK G D V +SL+ MYS
Sbjct: 315 SGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDS 374
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++D+V F++ +V W+S+I HG+G+ A +F QM + E +++TF LL
Sbjct: 375 GNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLL 434
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239
ACSHCG EKG + F M R ++HYTC+VD+LGRCG L EA LI M VK
Sbjct: 435 SACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKP 494
Query: 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
N ++W LLSAC+ H D + A I ++ + +A YVLLSNI+ASA RW VS+ R
Sbjct: 495 NEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRV 554
Query: 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGA 359
M++ + K+PG SW+ I+ + H+F GD+ P I LE L ++K GY PD +
Sbjct: 555 KMKKNGIMKKPGSSWVVIRGKKHEFFSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRS 612
Query: 360 DMHDMDSEEKEYNLKHHSEKLAIAFA--EHTRGLIVML------------PFKYISEIKN 405
+HD++ E+KE L +HSE+LAIAF G V + K IS +
Sbjct: 613 ALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVG 672
Query: 406 REIIVRDASRFHHFRNGKCSCGDYW 430
REI++RD RFHHF+NG CSCGDYW
Sbjct: 673 REIVLRDPIRFHHFKNGTCSCGDYW 697
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 2/269 (0%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D A +S+ H Y++ G + + K+ + MP +NVI+W T+I G QN + + LD + M
Sbjct: 158 DTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNML 217
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
+ F VI++C+ G Q+H ++K G + V +SLI+ Y+ C +
Sbjct: 218 RCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIG 277
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
DS K F E + V +W+++++ Y + K E+A+++F M + N TF S L +CS
Sbjct: 278 DSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCS 337
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
G + G E + VK + VV + G +++A ++ + K + + W
Sbjct: 338 ALGTLDWGKEMHGVAVKLGLETDAFVGNSLVV-MYSDSGNVNDAVSVFIKI-FKKSIVSW 395
Query: 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQ 273
+++ C H A I +++ +N +
Sbjct: 396 NSIIVGCAQHGRGKWAFVIFGQMIRLNKE 424
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 98/189 (51%), Gaps = 14/189 (7%)
Query: 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK--I 73
Y +S LV+ + MP+R+V++W ++I+G + G D +++ P++ +
Sbjct: 76 YTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECG------DMNTAVKLFDEMPERSVV 129
Query: 74 TFVSVISSCSELATLGQGQQIHAEV-VKAGASLDVGVISSLISMYSRCGCLDDSVKTFLE 132
++ ++++ C + Q +++ ++ VK D +S++ Y + G +DD++K F +
Sbjct: 130 SWTAMVNGCFRSGKVDQAERLFYQMPVK-----DTAAWNSMVHGYLQFGKVDDALKLFKQ 184
Query: 133 CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192
+V+ W++MI + + EA++LF+ M + ++ F ++ AC++ G
Sbjct: 185 MPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMG 244
Query: 193 MEFFDLMVK 201
++ L++K
Sbjct: 245 IQVHGLIIK 253
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182
+D++ + F + V L++ MI Y + +A+NLF++M ++ V++ S++
Sbjct: 51 IDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDV----VSWNSMISG 106
Query: 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAI 242
C CG ++ FD M ++ + +T +V+ R G +D+A L MPVK A
Sbjct: 107 CVECGDMNTAVKLFDEMPER-----SVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA- 160
Query: 243 IWKTLLSACKTHKSTDMAGRIAEEILGVN 271
W +++ D A ++ +++ G N
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQMPGKN 189
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 97 EVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEE 156
EV S V + + +I+ Y+R L D++ F E DVV W+SMI+ G
Sbjct: 56 EVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNT 115
Query: 157 AINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV 216
A+ LF++M ++ V++ +++ C G ++ F M K + +V
Sbjct: 116 AVKLFDEMPERSV----VSWTAMVNGCFRSGKVDQAERLFYQMPVK-----DTAAWNSMV 166
Query: 217 DLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
+ G +D+A L + MP K N I W T++
Sbjct: 167 HGYLQFGKVDDALKLFKQMPGK-NVISWTTMI 197
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 314 bits (804), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 169/451 (37%), Positives = 258/451 (57%), Gaps = 26/451 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF +L ++L +Y K G L + +P ++VI+W TLI G L ++ L +
Sbjct: 296 GFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLF 355
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK--AGASLDVGVISSLISMYS 118
M G P+ +T +S++ +C+ L + G+ IH + K G + + +SLI MY+
Sbjct: 356 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYA 415
Query: 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178
+CG ++ + + F + + W++MI + HG+ + + +LF +M + + +D+TFV
Sbjct: 416 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVG 475
Query: 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVK 238
LL ACSH G+ + G F M + Y+ P+LEHY C++DLLG G EA +I M ++
Sbjct: 476 LLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEME 535
Query: 239 ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFR 298
+ +IW +LL ACK H + ++ AE ++ + P++ YVLLSNI+ASA RW V++ R
Sbjct: 536 PDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTR 595
Query: 299 EAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTG 358
+ ++ +KK PG S +EI + VH+F +GDK HPR+ EI LEE+ ++ G+VPDT
Sbjct: 596 ALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTS 655
Query: 359 ADMHDMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLP-------------------FKY 399
+ +M+ E KE L+HHSEKLAIAF GLI P K
Sbjct: 656 EVLQEMEEEWKEGALRHHSEKLAIAF-----GLISTKPGTKLTIVKNLRVCRNCHEATKL 710
Query: 400 ISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
IS+I REII RD +RFHHFR+G CSC DYW
Sbjct: 711 ISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 154/304 (50%), Gaps = 8/304 (2%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D+V+ ++L Y G + +K+ +P+++V++W +I+G A+ G ++ L+ + M
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
RPD+ T V+V+S+C++ ++ G+Q+H + G ++ ++++LI +YS+CG L+
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 318
Query: 125 DSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
+ F Y DV+ W+++I Y +EA+ LF++M + NDVT +S+L AC+
Sbjct: 319 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 378
Query: 185 HCGLKEKGM---EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
H G + G + D +K L T ++D+ +CG + EAA + N + +
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKGVTNASSLR--TSLIDMYAKCGDI-EAAHQVFNSILHKSL 435
Query: 242 IIWKTLLSACKTHKSTDMAGRIAEEI--LGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299
W ++ H D + + + +G+ P D LLS S G FR
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495
Query: 300 AMRE 303
++
Sbjct: 496 MTQD 499
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95
N++ W T+ G A + L Y M +G P+ TF V+ SC++ +GQQIH
Sbjct: 98 NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIH 157
Query: 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKT-------------------------- 129
V+K G LD+ V +SLISMY + G L+D+ K
Sbjct: 158 GHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIE 217
Query: 130 -----FLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184
F E DVV W++MI+ Y G +EA+ LF+ M + ++ T V+++ AC+
Sbjct: 218 NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277
Query: 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIW 244
G E G + L + + L+ ++DL +CG L+ A L +P K + I W
Sbjct: 278 QSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISW 335
Query: 245 KTLLSACKTHKSTDMAGRIAEEIL--GVNPQDAA 276
TL+ A + +E+L G P D
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/444 (37%), Positives = 255/444 (57%), Gaps = 16/444 (3%)
Query: 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL 62
E D V +++ Y S +V+ MP ++++AW LI+ QNG + L ++
Sbjct: 295 EKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHE 354
Query: 63 MRMV-GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121
+++ + ++IT VS +S+C+++ L G+ IH+ + K G ++ V S+LI MYS+CG
Sbjct: 355 LQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCG 414
Query: 122 CLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181
L+ S + F E DV +WS+MI HG G EA+++F +M++ + N VTF ++
Sbjct: 415 DLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFC 474
Query: 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA 241
ACSH GL ++ F M Y P +HY C+VD+LGR GYL++A I MP+ +
Sbjct: 475 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPST 534
Query: 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301
+W LL ACK H + ++A +L + P++ +VLLSNI+A +W+ VSE R+ M
Sbjct: 535 SVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHM 594
Query: 302 RERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADM 361
R +KKEPG S +EI +H+F GD +HP S ++ L E+ ++K GY P+ +
Sbjct: 595 RVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVL 654
Query: 362 HDMDSEE-KEYNLKHHSEKLAIAF----AEHTRGLIVMLPF----------KYISEIKNR 406
++ EE KE +L HSEKLAI + E + + V+ K IS++ +R
Sbjct: 655 QIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDR 714
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
EIIVRD RFHHFRNG+CSC D+W
Sbjct: 715 EIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 144/296 (48%), Gaps = 19/296 (6%)
Query: 20 GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG---FRPDKITFV 76
SL KV +P N AW TLI A + VL + + MV P+K TF
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASG--PDPVLSIWAFLDMVSESQCYPNKYTFP 135
Query: 77 SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS 136
+I + +E+++L GQ +H VK+ DV V +SLI Y CG LD + K F +
Sbjct: 136 FLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195
Query: 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196
DVV W+SMI + G ++A+ LF++ME ++ +A+ VT V +L AC+ K + +EF
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA----KIRNLEFG 251
Query: 197 DLM---VKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKT 253
+ +++ R L ++D+ +CG +++A L M K N + W T+L
Sbjct: 252 RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAI 310
Query: 254 HKSTDMAGRIAEEILGVNPQD--AAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307
+ + A E+L PQ A L+S + K + + F E ++N+K
Sbjct: 311 SEDYEA----AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMK 362
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 142/297 (47%), Gaps = 38/297 (12%)
Query: 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64
D+ +SL H Y G L KV + ++V++W ++I G Q G + L+ + M
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 65 MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124
+ +T V V+S+C+++ L G+Q+ + + + ++++ + ++++ MY++CG ++
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 125 DSVKTFLECE-------------------------------YSDVVLWSSMIAAYGFHGK 153
D+ + F E D+V W+++I+AY +GK
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 154 GEEAINLFEQME-QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY 212
EA+ +F +++ QK + N +T VS L AC+ G E G + +KK+ +
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVT 403
Query: 213 TCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTH----KSTDMAGRIAE 265
+ ++ + +CG L+++ + ++ K + +W ++ H ++ DM ++ E
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G ++ S+L HMY K G L + +V + R+V W +I G A +G + +D +
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQI-HAEVVKAGASLDVGVISSLISMYSR 119
M+ +P+ +TF +V +CS + + + + H G + + ++ + R
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGR 514
Query: 120 CGCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGK 153
G L+ +VK F+E +W +++ A H
Sbjct: 515 SGYLEKAVK-FIEAMPIPPSTSVWGALLGACKIHAN 549
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 266/454 (58%), Gaps = 29/454 (6%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
GF D + ++L +Y + + KV +P R+ ++W L + +N DVL +
Sbjct: 143 GFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLF 202
Query: 61 NLMR--MVG-FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117
+ M+ + G +PD +T + + +C+ L L G+Q+H + + G S + + ++L+SMY
Sbjct: 203 DKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMY 262
Query: 118 SRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177
SRCG +D + + F +VV W+++I+ +G G+EAI F +M + + T
Sbjct: 263 SRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLT 322
Query: 178 SLLYACSHCGLKEKGMEFFDLMVK-KYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236
LL ACSH GL +GM FFD M +++ KP L HY CVVDLLGR LD+A +LI++M
Sbjct: 323 GLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSME 382
Query: 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296
+K ++ IW+TLL AC+ H ++ R+ ++ + ++A YVLL N +++ +W+ V+E
Sbjct: 383 MKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTE 442
Query: 297 FREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPD 356
R M+E+ + +PG S +E++ VH+F + D SHPR EI L E+ ++K+ GYV +
Sbjct: 443 LRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAE 502
Query: 357 TGADMHDMDS-EEKEYNLKHHSEKLAIAFAEHTRGLIVMLP------------------- 396
+++H+++S EEK Y L++HSEKLAIAF G++V P
Sbjct: 503 ITSELHNLESEEEKGYALRYHSEKLAIAF-----GILVTPPGTTIRVTKNLRTCVDCHNF 557
Query: 397 FKYISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430
K++S++ +R +IVRD SRFHHF+ G CSC D+W
Sbjct: 558 AKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 8/239 (3%)
Query: 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDV 138
+ C + L G QIH ++ G D ++++L+ +YS C D+ K F E D
Sbjct: 120 LKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDT 179
Query: 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKE---FEANDVTFVSLLYACSHCGLKEKGMEF 195
V W+ + + Y + + + + LF++M+ + + VT + L AC++ G + G +
Sbjct: 180 VSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQV 239
Query: 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255
D + + L +V + RCG +D+A + M + N + W L+S +
Sbjct: 240 HDF-IDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRER-NVVSWTALISGLAMNG 297
Query: 256 STDMAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGV 312
A E+L G++P++ LLS S +G+ F + MR K +P +
Sbjct: 298 FGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMM-FFDRMRSGEFKIKPNL 355
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 256/450 (56%), Gaps = 25/450 (5%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + ++ +L +MY + + V + V+ + +I G A+ + L +
Sbjct: 159 GLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLF 218
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
M+ +P++IT +SV+SSC+ L +L G+ IH K V V ++LI M+++C
Sbjct: 219 REMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKC 278
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G LDD+V F + Y D WS+MI AY HGK E+++ +FE+M + + +++TF+ LL
Sbjct: 279 GSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLL 338
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
ACSH G E+G ++F MV K+ P ++HY +VDLL R G L++A I +P+
Sbjct: 339 NACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPT 398
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
++W+ LL+AC +H + D+A +++E I ++ YV+LSN++A K+W+ V R+
Sbjct: 399 PMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKV 458
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M++R K PG S +E+ N VH+F GD + ++ L+E+ E+KL GYVPDT
Sbjct: 459 MKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMV 518
Query: 361 MH-DMDSEEKEYNLKHHSEKLAIAFAEHTRGLIVMLPFKYISEIKN-------------- 405
+H +M+ +EKE L++HSEKLAI F GL+ P I +KN
Sbjct: 519 VHANMNDQEKEITLRYHSEKLAITF-----GLLNTPPGTTIRVVKNLRVCRDCHNAAKLI 573
Query: 406 -----REIIVRDASRFHHFRNGKCSCGDYW 430
R++++RD RFHHF +GKCSCGD+W
Sbjct: 574 SLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 16/241 (6%)
Query: 67 GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS 126
G PD TF S++ +C+ L +G+Q+H +K G +V V +LI+MY+ C +D +
Sbjct: 124 GILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSA 183
Query: 127 VKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186
F VV +++MI Y + EA++LF +M+ K + N++T +S+L +C+
Sbjct: 184 RCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALL 243
Query: 187 GLKEKGMEFFDLMVKKYRRKPRLEHY----TCVVDLLGRCGYLDEAAALIRNMPVKANAI 242
G + G + KY +K Y T ++D+ +CG LD+A ++ M K +
Sbjct: 244 GSLDLGK-----WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQ 297
Query: 243 IWKTLLSACKTH----KSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFR 298
W ++ A H KS M R+ E V P + LL+ + + +G F
Sbjct: 298 AWSAMIVAYANHGKAEKSMLMFERMRSE--NVQPDEITFLGLLNACSHTGRVEEGRKYFS 355
Query: 299 E 299
+
Sbjct: 356 Q 356
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 40/224 (17%)
Query: 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC---GCLDDSVKTFLE 132
+ +IS C+ L L QI A +K+ DV ++ LI+ + + + F
Sbjct: 33 ILLISKCNSLREL---MQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEA 88
Query: 133 CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192
D+V+++SM Y E +LF ++ + ++ TF SLL AC+ E+G
Sbjct: 89 MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148
Query: 193 MEFFDL---------------MVKKYRRKPRLEHYTCVVDLL---------------GRC 222
+ L ++ Y ++ CV D + R
Sbjct: 149 RQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARR 208
Query: 223 GYLDEAAALIRNMP---VKANAIIWKTLLSACKTHKSTDMAGRI 263
+EA +L R M +K N I ++LS+C S D+ I
Sbjct: 209 NRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWI 252
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/444 (36%), Positives = 256/444 (57%), Gaps = 14/444 (3%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQY 60
G + D V SSL MY K G + E + + ++V++W ++I ++ + +
Sbjct: 248 GLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLF 307
Query: 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120
+ + RP++ TF V+++C++L T G+Q+H + + G SSL+ MY++C
Sbjct: 308 SELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKC 367
Query: 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180
G ++ + C D+V W+S+I +G+ +EA+ F+ + + + + VTFV++L
Sbjct: 368 GNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVL 427
Query: 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240
AC+H GL EKG+EFF + +K+R +HYTC+VDLL R G ++ ++I MP+K +
Sbjct: 428 SACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPS 487
Query: 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300
+W ++L C T+ + D+A A+E+ + P++ YV ++NI+A+A +W+ + R+
Sbjct: 488 KFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKR 547
Query: 301 MRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360
M+E V K PG SW EIK + H F D SHP +I +L EL +MK GYVP T
Sbjct: 548 MQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLV 607
Query: 361 MHDMDSEEKEYNLKHHSEKLAIAFA----EHTRGLIVML----------PFKYISEIKNR 406
+HD++ E+KE NL +HSEKLA+AFA E + V K+IS I R
Sbjct: 608 LHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKR 667
Query: 407 EIIVRDASRFHHFRNGKCSCGDYW 430
+I VRD++RFH F NG+CSCGDYW
Sbjct: 668 KITVRDSTRFHCFENGQCSCGDYW 691
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 144/316 (45%), Gaps = 36/316 (11%)
Query: 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGL-------- 52
GF +V + L MY K GSLV+ KV MP R++ +W ++ G A+ GL
Sbjct: 115 GFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLF 174
Query: 53 -----------------------AEDVLDQYNLM-RMVGFRPDKITFVSVISSCSELATL 88
E+ L Y+LM R+ RP+ T +++ + + +
Sbjct: 175 DEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCI 234
Query: 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAY 148
+G++IH +V+AG D + SSL+ MY +CGC+D++ F + DVV W+SMI Y
Sbjct: 235 RRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRY 294
Query: 149 GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR 208
+ E +LF ++ N+ TF +L AC+ +E G + M + P
Sbjct: 295 FKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMT-RVGFDPY 353
Query: 209 LEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL 268
+ +VD+ +CG ++ A ++ P K + + W +L+ C + D A + + +L
Sbjct: 354 SFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412
Query: 269 --GVNPQDAAPYVLLS 282
G P +LS
Sbjct: 413 KSGTKPDHVTFVNVLS 428
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 106/239 (44%), Gaps = 46/239 (19%)
Query: 51 GLAEDVLDQYNLMR----MVGF--RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS 104
G A DVL L+R ++G +P T+ ++I CS+ L +G+++H + +G
Sbjct: 58 GEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFV 117
Query: 105 LDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM 164
+ + + L+ MY++CG L D+ K F E D+ W+ M+ Y G EEA LF++M
Sbjct: 118 PGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEM 177
Query: 165 EQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEH------------- 211
+K+ ++ +++ E+ + + LM + +P +
Sbjct: 178 TEKD----SYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKC 233
Query: 212 ----------------------YTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248
++ ++D+ G+CG +DEA + + V+ + + W +++
Sbjct: 234 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI-VEKDVVSWTSMI 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,476,681
Number of Sequences: 539616
Number of extensions: 6403524
Number of successful extensions: 19560
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 15575
Number of HSP's gapped (non-prelim): 1777
length of query: 430
length of database: 191,569,459
effective HSP length: 120
effective length of query: 310
effective length of database: 126,815,539
effective search space: 39312817090
effective search space used: 39312817090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)