Query 043370
Match_columns 430
No_of_seqs 563 out of 3394
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 9.7E-96 2E-100 740.9 48.2 430 1-430 254-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 4.6E-89 1E-93 707.5 47.8 425 1-428 419-857 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.1E-54 2.3E-59 441.0 34.1 349 1-367 153-504 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.2E-54 2.6E-59 450.6 32.7 398 1-404 217-652 (857)
5 PLN03218 maturation of RBCL 1; 100.0 3.6E-53 7.8E-58 433.8 36.7 358 1-363 467-853 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.7E-51 3.6E-56 421.6 36.6 344 3-360 434-792 (1060)
7 PRK11788 tetratricopeptide rep 99.9 1.2E-21 2.5E-26 186.8 30.7 297 12-312 41-355 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 4.1E-20 8.9E-25 194.7 35.9 296 4-306 565-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-19 2.3E-24 191.6 36.5 294 4-304 531-832 (899)
10 PRK11788 tetratricopeptide rep 99.9 4.7E-20 1E-24 175.8 28.9 303 43-360 41-356 (389)
11 PF14432 DYW_deaminase: DYW fa 99.9 3.8E-23 8.2E-28 157.3 6.0 98 311-420 2-116 (116)
12 PRK15174 Vi polysaccharide exp 99.8 5.1E-17 1.1E-21 163.2 33.0 292 8-305 78-382 (656)
13 PRK15174 Vi polysaccharide exp 99.8 2.2E-16 4.8E-21 158.6 34.6 289 12-305 48-348 (656)
14 TIGR00990 3a0801s09 mitochondr 99.8 8.4E-16 1.8E-20 154.6 35.5 224 76-303 335-570 (615)
15 KOG4626 O-linked N-acetylgluco 99.8 6.6E-17 1.4E-21 149.9 22.1 287 7-301 117-448 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 3.7E-15 8.1E-20 149.9 35.3 292 9-305 130-497 (615)
17 KOG4626 O-linked N-acetylgluco 99.8 2.2E-16 4.9E-21 146.4 23.2 279 7-293 219-508 (966)
18 PRK11447 cellulose synthase su 99.7 2.4E-14 5.1E-19 153.5 34.4 285 13-303 276-665 (1157)
19 PRK11447 cellulose synthase su 99.7 3.9E-14 8.5E-19 151.8 34.6 285 13-305 358-701 (1157)
20 PRK10049 pgaA outer membrane p 99.7 1.5E-13 3.2E-18 141.1 36.9 296 6-305 49-423 (765)
21 PRK10049 pgaA outer membrane p 99.7 4.1E-13 8.9E-18 137.9 34.6 298 5-304 82-456 (765)
22 PF13429 TPR_15: Tetratricopep 99.7 4.1E-16 8.8E-21 141.4 10.5 256 42-302 13-275 (280)
23 PRK10747 putative protoheme IX 99.6 6.7E-13 1.5E-17 126.0 29.2 274 19-302 97-388 (398)
24 PRK09782 bacteriophage N4 rece 99.6 1.4E-12 3E-17 134.7 32.5 260 36-305 476-741 (987)
25 PRK09782 bacteriophage N4 rece 99.6 4.4E-12 9.6E-17 131.1 35.6 288 11-305 381-707 (987)
26 TIGR00540 hemY_coli hemY prote 99.5 1.9E-11 4.2E-16 116.7 30.6 277 18-301 96-396 (409)
27 KOG1126 DNA-binding cell divis 99.5 1.9E-12 4.1E-17 122.0 22.6 274 21-304 334-620 (638)
28 KOG1126 DNA-binding cell divis 99.5 2.3E-12 5E-17 121.4 23.1 244 52-304 334-586 (638)
29 PF13429 TPR_15: Tetratricopep 99.5 4.7E-14 1E-18 127.9 11.1 251 11-269 13-276 (280)
30 PRK10747 putative protoheme IX 99.5 1.4E-11 3E-16 117.0 28.4 252 49-305 96-358 (398)
31 TIGR00540 hemY_coli hemY prote 99.5 1.2E-11 2.7E-16 118.0 27.2 268 39-309 84-369 (409)
32 KOG4318 Bicoid mRNA stability 99.5 1.3E-12 2.8E-17 126.3 18.1 270 58-367 11-281 (1088)
33 PRK14574 hmsH outer membrane p 99.5 1.5E-10 3.4E-15 117.4 34.0 159 146-304 300-479 (822)
34 KOG2003 TPR repeat-containing 99.5 2E-11 4.4E-16 110.0 23.2 272 15-291 428-710 (840)
35 KOG4422 Uncharacterized conser 99.5 2.7E-11 5.9E-16 108.5 23.8 123 27-154 198-328 (625)
36 TIGR02521 type_IV_pilW type IV 99.5 2.5E-11 5.4E-16 106.5 23.6 197 106-303 30-231 (234)
37 KOG2076 RNA polymerase III tra 99.5 1.2E-10 2.7E-15 113.4 29.3 288 12-302 145-510 (895)
38 PRK14574 hmsH outer membrane p 99.5 2.6E-10 5.7E-15 115.8 32.5 287 14-303 42-395 (822)
39 KOG1155 Anaphase-promoting com 99.4 2.7E-10 5.8E-15 103.2 28.0 296 4-303 162-494 (559)
40 PRK12370 invasion protein regu 99.4 1.7E-10 3.6E-15 114.4 28.9 261 35-305 254-536 (553)
41 PF13041 PPR_2: PPR repeat fam 99.4 4.4E-13 9.6E-18 86.5 6.9 50 35-84 1-50 (50)
42 KOG4422 Uncharacterized conser 99.4 1.9E-10 4E-15 103.2 25.6 298 3-306 204-553 (625)
43 PF13041 PPR_2: PPR repeat fam 99.4 6.6E-13 1.4E-17 85.7 6.8 50 136-185 1-50 (50)
44 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.7E-14 97.4 29.4 275 19-303 97-389 (400)
45 COG2956 Predicted N-acetylgluc 99.4 6.4E-10 1.4E-14 96.5 26.3 253 47-303 45-310 (389)
46 COG2956 Predicted N-acetylgluc 99.4 6.4E-10 1.4E-14 96.5 26.2 299 19-325 48-368 (389)
47 TIGR02521 type_IV_pilW type IV 99.4 5.5E-10 1.2E-14 97.9 24.5 194 36-234 30-228 (234)
48 KOG1155 Anaphase-promoting com 99.3 1E-09 2.2E-14 99.5 25.1 262 34-305 161-462 (559)
49 KOG1173 Anaphase-promoting com 99.3 7.1E-10 1.5E-14 102.9 24.1 261 36-302 243-516 (611)
50 COG3071 HemY Uncharacterized e 99.3 4E-09 8.7E-14 94.2 27.1 260 41-305 86-358 (400)
51 KOG1840 Kinesin light chain [C 99.3 8E-10 1.7E-14 105.2 24.1 231 72-302 199-477 (508)
52 PRK12370 invasion protein regu 99.3 9.9E-10 2.2E-14 108.9 24.5 241 20-271 275-536 (553)
53 KOG0495 HAT repeat protein [RN 99.3 1.8E-08 3.8E-13 95.3 29.6 295 11-312 411-718 (913)
54 KOG2076 RNA polymerase III tra 99.3 1.6E-08 3.5E-13 98.9 29.7 253 49-304 151-478 (895)
55 KOG2002 TPR-containing nuclear 99.3 5.6E-09 1.2E-13 102.8 26.2 312 4-319 268-608 (1018)
56 KOG1129 TPR repeat-containing 99.2 1.2E-09 2.7E-14 94.8 17.6 229 41-304 227-458 (478)
57 KOG0547 Translocase of outer m 99.2 1E-08 2.3E-13 93.7 23.3 162 137-302 393-564 (606)
58 KOG0495 HAT repeat protein [RN 99.2 9.8E-08 2.1E-12 90.4 29.8 271 37-315 516-791 (913)
59 KOG1129 TPR repeat-containing 99.2 1.5E-09 3.2E-14 94.3 16.3 197 104-305 220-425 (478)
60 PRK11189 lipoprotein NlpI; Pro 99.2 8.8E-09 1.9E-13 93.8 22.4 209 87-304 41-265 (296)
61 PRK11189 lipoprotein NlpI; Pro 99.2 4.2E-08 9.2E-13 89.3 26.4 220 50-277 39-272 (296)
62 KOG1840 Kinesin light chain [C 99.1 1.8E-08 3.8E-13 96.1 22.6 230 39-268 201-477 (508)
63 KOG2003 TPR repeat-containing 99.1 2.6E-08 5.6E-13 90.3 22.1 255 45-304 427-689 (840)
64 KOG1173 Anaphase-promoting com 99.1 5.6E-08 1.2E-12 90.6 24.5 276 2-282 240-530 (611)
65 KOG1174 Anaphase-promoting com 99.1 6.3E-08 1.4E-12 87.0 23.7 267 5-277 231-507 (564)
66 KOG2002 TPR-containing nuclear 99.1 1.3E-07 2.8E-12 93.5 27.1 293 9-306 310-677 (1018)
67 KOG1915 Cell cycle control pro 99.1 6E-07 1.3E-11 82.2 28.4 293 9-306 144-502 (677)
68 PF12569 NARP1: NMDA receptor- 99.1 1.4E-07 3.1E-12 91.0 26.0 253 48-306 15-293 (517)
69 KOG0547 Translocase of outer m 99.1 1.5E-07 3.2E-12 86.4 24.2 286 12-303 121-490 (606)
70 COG3063 PilF Tfp pilus assembl 99.0 4.5E-08 9.7E-13 81.4 17.6 162 141-306 38-204 (250)
71 KOG4318 Bicoid mRNA stability 99.0 1.4E-08 3.1E-13 98.9 16.8 249 34-312 22-273 (1088)
72 KOG1125 TPR repeat-containing 99.0 3E-08 6.6E-13 92.7 16.6 215 82-302 295-525 (579)
73 KOG1174 Anaphase-promoting com 99.0 4.1E-06 8.9E-11 75.6 29.1 179 146-358 342-524 (564)
74 PF04733 Coatomer_E: Coatomer 99.0 2.3E-08 4.9E-13 90.0 15.2 244 18-272 13-267 (290)
75 PF04733 Coatomer_E: Coatomer 99.0 5.6E-08 1.2E-12 87.5 17.6 245 45-304 9-265 (290)
76 PF12569 NARP1: NMDA receptor- 99.0 1.8E-06 3.8E-11 83.6 28.5 284 13-303 11-333 (517)
77 COG3063 PilF Tfp pilus assembl 99.0 5.3E-07 1.2E-11 75.2 21.3 187 39-230 37-228 (250)
78 PF12854 PPR_1: PPR repeat 99.0 1E-09 2.2E-14 63.7 4.0 33 1-33 2-34 (34)
79 cd05804 StaR_like StaR_like; a 98.9 3.5E-06 7.6E-11 79.3 30.3 300 4-305 3-337 (355)
80 KOG4162 Predicted calmodulin-b 98.9 3.3E-06 7.1E-11 81.9 28.4 299 3-304 320-783 (799)
81 cd05804 StaR_like StaR_like; a 98.8 2.6E-05 5.7E-10 73.3 31.0 268 36-305 5-294 (355)
82 KOG0624 dsRNA-activated protei 98.8 1.6E-05 3.4E-10 70.2 26.3 289 11-305 43-371 (504)
83 KOG4340 Uncharacterized conser 98.8 2.6E-06 5.7E-11 73.6 21.2 283 8-300 12-335 (459)
84 KOG1915 Cell cycle control pro 98.8 7.4E-06 1.6E-10 75.2 24.5 253 48-304 84-351 (677)
85 KOG1070 rRNA processing protei 98.8 1.2E-06 2.6E-11 89.7 21.0 199 106-308 1457-1667(1710)
86 PF12854 PPR_1: PPR repeat 98.7 1.6E-08 3.5E-13 58.6 4.3 33 102-134 2-34 (34)
87 TIGR03302 OM_YfiO outer membra 98.7 2.3E-06 5E-11 75.4 19.4 180 106-305 32-233 (235)
88 PLN02789 farnesyltranstransfer 98.7 1.6E-05 3.5E-10 72.6 24.1 231 39-302 39-300 (320)
89 KOG1125 TPR repeat-containing 98.6 2.5E-06 5.5E-11 80.1 17.8 246 46-296 294-563 (579)
90 TIGR03302 OM_YfiO outer membra 98.6 1.3E-05 2.9E-10 70.5 20.8 183 34-235 30-229 (235)
91 KOG3785 Uncharacterized conser 98.6 6.5E-05 1.4E-09 66.7 24.3 289 11-305 156-491 (557)
92 PLN02789 farnesyltranstransfer 98.6 9.5E-05 2.1E-09 67.6 25.7 209 8-221 39-267 (320)
93 PRK10370 formate-dependent nit 98.6 9.2E-06 2E-10 69.1 17.9 118 186-305 52-174 (198)
94 KOG1070 rRNA processing protei 98.5 4E-05 8.7E-10 79.0 24.2 239 60-301 1447-1697(1710)
95 PRK04841 transcriptional regul 98.5 8.8E-05 1.9E-09 79.0 28.6 296 10-305 413-761 (903)
96 PRK10370 formate-dependent nit 98.5 9.7E-06 2.1E-10 69.0 17.2 116 50-167 52-173 (198)
97 KOG2047 mRNA splicing factor [ 98.5 0.00038 8.2E-09 66.7 28.6 282 7-292 388-711 (835)
98 KOG1128 Uncharacterized conser 98.5 6.1E-06 1.3E-10 79.6 17.2 215 3-235 395-613 (777)
99 PRK15359 type III secretion sy 98.5 4E-06 8.7E-11 67.4 13.4 121 159-285 14-136 (144)
100 PRK14720 transcript cleavage f 98.5 4.3E-05 9.4E-10 77.8 23.6 230 35-286 29-268 (906)
101 KOG2047 mRNA splicing factor [ 98.5 0.00035 7.6E-09 66.9 27.5 288 5-300 168-536 (835)
102 PRK15179 Vi polysaccharide bio 98.5 1.5E-05 3.3E-10 80.1 19.9 210 74-306 30-247 (694)
103 KOG1156 N-terminal acetyltrans 98.5 0.00016 3.5E-09 69.2 25.3 195 48-246 52-257 (700)
104 KOG1156 N-terminal acetyltrans 98.5 0.00042 9.1E-09 66.5 27.9 293 7-305 76-435 (700)
105 KOG1128 Uncharacterized conser 98.5 9.6E-06 2.1E-10 78.3 17.2 189 102-305 393-583 (777)
106 COG5010 TadD Flp pilus assembl 98.5 1.3E-05 2.7E-10 68.5 16.1 156 41-199 70-228 (257)
107 PRK04841 transcriptional regul 98.4 0.00071 1.5E-08 72.1 32.0 288 16-303 384-719 (903)
108 TIGR00756 PPR pentatricopeptid 98.4 5E-07 1.1E-11 53.0 4.3 35 139-173 1-35 (35)
109 TIGR00756 PPR pentatricopeptid 98.4 4.6E-07 9.9E-12 53.2 4.1 35 38-72 1-35 (35)
110 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1E-05 2.3E-10 75.4 15.0 119 42-165 174-295 (395)
111 PRK15359 type III secretion sy 98.4 1.4E-05 3E-10 64.3 13.7 91 40-132 27-117 (144)
112 KOG3081 Vesicle coat complex C 98.4 0.00057 1.2E-08 58.7 23.3 243 19-272 21-273 (299)
113 COG5010 TadD Flp pilus assembl 98.4 7.8E-05 1.7E-09 63.8 18.2 152 111-266 70-227 (257)
114 KOG0548 Molecular co-chaperone 98.4 0.00023 4.9E-09 66.8 22.6 101 14-117 10-114 (539)
115 KOG4340 Uncharacterized conser 98.4 0.00011 2.3E-09 63.9 19.0 175 20-198 126-335 (459)
116 KOG3616 Selective LIM binding 98.3 0.0001 2.2E-09 71.5 20.1 137 80-235 740-876 (1636)
117 KOG3617 WD40 and TPR repeat-co 98.3 0.00015 3.3E-09 71.1 21.5 239 5-268 725-994 (1416)
118 PRK15179 Vi polysaccharide bio 98.3 0.00016 3.5E-09 72.9 22.4 142 69-214 83-227 (694)
119 PRK14720 transcript cleavage f 98.3 0.00036 7.8E-09 71.3 24.7 215 5-252 30-268 (906)
120 PRK15363 pathogenicity island 98.3 2.4E-05 5.1E-10 62.3 13.0 119 208-349 34-154 (157)
121 COG4783 Putative Zn-dependent 98.3 0.00014 3.1E-09 67.5 19.3 175 123-302 253-435 (484)
122 PF13812 PPR_3: Pentatricopept 98.3 1.4E-06 2.9E-11 50.8 4.2 33 38-70 2-34 (34)
123 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.7E-05 8E-10 71.8 15.7 128 108-239 170-298 (395)
124 KOG3616 Selective LIM binding 98.3 0.00028 6E-09 68.5 21.3 253 19-304 745-1024(1636)
125 KOG3060 Uncharacterized conser 98.3 0.00043 9.2E-09 59.0 20.0 165 112-281 57-231 (289)
126 KOG3617 WD40 and TPR repeat-co 98.2 0.00039 8.5E-09 68.4 22.0 252 5-297 756-1057(1416)
127 PF13812 PPR_3: Pentatricopept 98.2 1.9E-06 4.1E-11 50.2 4.2 33 139-171 2-34 (34)
128 COG4783 Putative Zn-dependent 98.2 0.00052 1.1E-08 63.9 21.5 132 83-235 317-451 (484)
129 KOG2376 Signal recognition par 98.2 0.0059 1.3E-07 58.3 28.9 75 224-299 322-400 (652)
130 TIGR02552 LcrH_SycD type III s 98.2 2.6E-05 5.7E-10 62.0 11.4 95 210-304 18-114 (135)
131 KOG4162 Predicted calmodulin-b 98.2 0.00091 2E-08 65.5 23.3 134 139-276 651-789 (799)
132 KOG0624 dsRNA-activated protei 98.2 0.0017 3.7E-08 57.8 22.6 263 36-304 37-336 (504)
133 TIGR02552 LcrH_SycD type III s 98.2 7.8E-05 1.7E-09 59.3 13.5 94 73-167 18-114 (135)
134 KOG1127 TPR repeat-containing 98.2 0.00012 2.5E-09 73.4 17.0 159 7-166 493-658 (1238)
135 KOG0985 Vesicle coat protein c 98.1 0.0024 5.3E-08 64.4 25.1 256 19-297 1088-1376(1666)
136 KOG3081 Vesicle coat complex C 98.1 0.00075 1.6E-08 58.0 18.6 242 45-302 16-269 (299)
137 KOG1914 mRNA cleavage and poly 98.1 0.0049 1.1E-07 58.3 25.2 118 190-309 348-469 (656)
138 PF09976 TPR_21: Tetratricopep 98.1 0.00036 7.8E-09 56.3 16.2 123 39-163 14-143 (145)
139 KOG0985 Vesicle coat protein c 98.1 0.0011 2.5E-08 66.7 22.0 242 12-288 1054-1326(1666)
140 KOG3060 Uncharacterized conser 98.1 0.00038 8.3E-09 59.2 16.2 178 121-302 26-218 (289)
141 PF01535 PPR: PPR repeat; Int 98.0 6.4E-06 1.4E-10 46.7 3.4 31 139-169 1-31 (31)
142 PF01535 PPR: PPR repeat; Int 98.0 5.7E-06 1.2E-10 46.9 3.0 31 38-68 1-31 (31)
143 PF09976 TPR_21: Tetratricopep 98.0 0.00079 1.7E-08 54.2 15.6 122 142-266 16-143 (145)
144 KOG2376 Signal recognition par 97.9 0.0065 1.4E-07 58.0 23.2 280 12-300 181-516 (652)
145 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00021 4.5E-09 55.2 11.5 101 177-277 6-112 (119)
146 cd00189 TPR Tetratricopeptide 97.9 0.00015 3.2E-09 52.8 9.9 92 212-303 3-96 (100)
147 KOG3785 Uncharacterized conser 97.8 0.0042 9.1E-08 55.6 19.0 291 4-301 89-454 (557)
148 PRK15363 pathogenicity island 97.8 0.00089 1.9E-08 53.5 13.4 103 28-132 25-128 (157)
149 KOG2053 Mitochondrial inherita 97.8 0.02 4.3E-07 57.5 24.8 222 48-274 20-259 (932)
150 KOG1127 TPR repeat-containing 97.8 0.0055 1.2E-07 62.0 20.7 176 107-287 492-676 (1238)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00041 8.9E-09 53.5 10.8 96 210-305 3-106 (119)
152 PRK10153 DNA-binding transcrip 97.8 0.0022 4.7E-08 62.8 17.8 63 210-272 421-484 (517)
153 PF12895 Apc3: Anaphase-promot 97.8 3.3E-05 7.1E-10 55.7 4.0 79 187-265 3-82 (84)
154 KOG0548 Molecular co-chaperone 97.8 0.0068 1.5E-07 57.2 19.9 249 40-299 227-484 (539)
155 cd00189 TPR Tetratricopeptide 97.8 0.00039 8.4E-09 50.5 10.0 91 40-132 3-93 (100)
156 PF04840 Vps16_C: Vps16, C-ter 97.7 0.03 6.5E-07 51.3 23.4 111 174-301 178-288 (319)
157 PF08579 RPM2: Mitochondrial r 97.7 0.00067 1.5E-08 50.3 10.2 81 39-119 27-116 (120)
158 PRK02603 photosystem I assembl 97.7 0.0019 4E-08 53.8 13.7 131 36-188 34-166 (172)
159 KOG0550 Molecular chaperone (D 97.7 0.0025 5.4E-08 58.2 14.9 258 42-305 54-351 (486)
160 PF05843 Suf: Suppressor of fo 97.6 0.0024 5.3E-08 57.6 14.8 128 38-167 2-136 (280)
161 PF13414 TPR_11: TPR repeat; P 97.6 0.00019 4.1E-09 49.4 6.0 64 240-303 2-66 (69)
162 PLN03088 SGT1, suppressor of 97.6 0.00044 9.6E-09 64.7 10.1 104 179-284 8-113 (356)
163 PLN03088 SGT1, suppressor of 97.6 0.0013 2.9E-08 61.5 13.1 100 145-248 9-110 (356)
164 PRK02603 photosystem I assembl 97.6 0.0011 2.4E-08 55.2 11.4 81 210-290 36-121 (172)
165 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.9E-08 48.8 10.1 81 140-221 27-116 (120)
166 PF05843 Suf: Suppressor of fo 97.6 0.0031 6.7E-08 56.9 14.8 132 139-273 2-139 (280)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00015 3.3E-09 52.2 5.2 80 50-131 2-82 (84)
168 KOG2796 Uncharacterized conser 97.6 0.006 1.3E-07 52.4 15.1 167 9-177 139-323 (366)
169 PF06239 ECSIT: Evolutionarily 97.5 0.00093 2E-08 55.9 9.9 99 24-122 32-153 (228)
170 KOG1914 mRNA cleavage and poly 97.5 0.023 4.9E-07 53.9 19.9 126 74-200 368-499 (656)
171 PRK10866 outer membrane biogen 97.5 0.055 1.2E-06 47.6 22.6 67 35-103 30-100 (243)
172 CHL00033 ycf3 photosystem I as 97.5 0.0012 2.6E-08 54.7 10.6 94 208-301 34-139 (168)
173 PF13432 TPR_16: Tetratricopep 97.5 0.00034 7.3E-09 47.5 6.0 57 248-304 4-60 (65)
174 PF10037 MRP-S27: Mitochondria 97.5 0.0038 8.3E-08 58.8 14.7 120 67-186 61-186 (429)
175 KOG0553 TPR repeat-containing 97.5 0.0011 2.3E-08 58.1 9.9 96 183-281 91-189 (304)
176 CHL00033 ycf3 photosystem I as 97.5 0.0041 9E-08 51.5 13.2 81 37-118 35-117 (168)
177 KOG1130 Predicted G-alpha GTPa 97.4 0.0011 2.5E-08 60.3 10.0 256 46-302 26-342 (639)
178 PF12688 TPR_5: Tetratrico pep 97.4 0.0053 1.2E-07 47.2 12.4 105 43-147 7-115 (120)
179 PF14938 SNAP: Soluble NSF att 97.4 0.022 4.7E-07 51.6 18.4 61 38-99 36-101 (282)
180 PF13432 TPR_16: Tetratricopep 97.4 0.00039 8.4E-09 47.2 5.3 60 215-274 3-64 (65)
181 PF14938 SNAP: Soluble NSF att 97.4 0.021 4.6E-07 51.6 18.0 98 176-273 117-228 (282)
182 PF10037 MRP-S27: Mitochondria 97.4 0.0086 1.9E-07 56.5 15.3 122 167-288 60-186 (429)
183 KOG0553 TPR repeat-containing 97.4 0.00064 1.4E-08 59.5 7.2 86 218-303 90-177 (304)
184 PF04840 Vps16_C: Vps16, C-ter 97.4 0.087 1.9E-06 48.3 21.3 107 112-235 182-288 (319)
185 PF06239 ECSIT: Evolutionarily 97.3 0.0035 7.5E-08 52.6 10.8 97 127-224 34-153 (228)
186 COG3898 Uncharacterized membra 97.3 0.13 2.7E-06 47.2 24.2 242 49-302 132-390 (531)
187 PRK10153 DNA-binding transcrip 97.3 0.023 5E-07 55.8 18.0 59 174-235 421-479 (517)
188 PF14559 TPR_19: Tetratricopep 97.3 0.00032 7E-09 48.1 3.6 52 252-303 2-53 (68)
189 COG4700 Uncharacterized protei 97.3 0.059 1.3E-06 44.1 16.7 133 169-303 85-221 (251)
190 PRK10866 outer membrane biogen 97.2 0.04 8.7E-07 48.5 17.4 180 106-302 31-239 (243)
191 COG4700 Uncharacterized protei 97.2 0.066 1.4E-06 43.8 16.7 122 104-230 86-214 (251)
192 COG4235 Cytochrome c biogenesi 97.2 0.0068 1.5E-07 53.4 12.1 101 206-306 153-258 (287)
193 KOG2053 Mitochondrial inherita 97.2 0.3 6.4E-06 49.5 24.7 212 18-235 21-252 (932)
194 KOG1538 Uncharacterized conser 97.2 0.036 7.9E-07 53.7 17.1 243 4-268 554-844 (1081)
195 PF13371 TPR_9: Tetratricopept 97.1 0.0015 3.3E-08 45.4 6.1 57 249-305 3-59 (73)
196 PF12688 TPR_5: Tetratrico pep 97.1 0.017 3.7E-07 44.4 12.0 91 144-234 7-100 (120)
197 PF13281 DUF4071: Domain of un 97.1 0.067 1.5E-06 49.6 17.9 160 110-272 144-336 (374)
198 PRK15331 chaperone protein Sic 97.1 0.0038 8.3E-08 50.2 8.3 87 217-303 45-133 (165)
199 PF13414 TPR_11: TPR repeat; P 97.0 0.0035 7.5E-08 43.0 7.0 65 36-101 2-67 (69)
200 PF14559 TPR_19: Tetratricopep 97.0 0.0038 8.3E-08 42.6 6.9 48 186-235 4-51 (68)
201 KOG2280 Vacuolar assembly/sort 96.9 0.3 6.6E-06 48.5 21.1 115 170-300 681-795 (829)
202 KOG2796 Uncharacterized conser 96.9 0.25 5.5E-06 42.8 18.1 229 37-273 69-318 (366)
203 PRK10803 tol-pal system protei 96.8 0.0097 2.1E-07 52.9 9.8 93 211-303 145-245 (263)
204 PF03704 BTAD: Bacterial trans 96.8 0.026 5.6E-07 45.4 11.6 69 242-310 63-136 (146)
205 PF12921 ATP13: Mitochondrial 96.8 0.023 4.9E-07 44.2 10.3 50 169-218 48-97 (126)
206 PF13371 TPR_9: Tetratricopept 96.7 0.0067 1.5E-07 42.1 6.1 61 217-277 3-65 (73)
207 PRK10803 tol-pal system protei 96.6 0.044 9.5E-07 48.7 12.5 101 175-275 145-251 (263)
208 KOG2041 WD40 repeat protein [G 96.6 0.34 7.3E-06 47.8 18.9 129 21-162 678-820 (1189)
209 PF13525 YfiO: Outer membrane 96.6 0.18 3.9E-06 43.1 16.0 48 248-295 148-198 (203)
210 PF13525 YfiO: Outer membrane 96.6 0.36 7.9E-06 41.2 20.3 61 42-102 10-72 (203)
211 PF13431 TPR_17: Tetratricopep 96.6 0.0014 3E-08 37.8 1.8 32 264-295 2-33 (34)
212 PF12921 ATP13: Mitochondrial 96.6 0.025 5.5E-07 43.9 9.4 78 173-250 2-97 (126)
213 PF13428 TPR_14: Tetratricopep 96.5 0.0042 9.2E-08 38.2 3.8 42 242-283 2-43 (44)
214 COG3898 Uncharacterized membra 96.3 0.84 1.8E-05 42.1 28.4 264 21-297 68-351 (531)
215 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.02 4.2E-07 53.8 8.4 97 208-307 74-177 (453)
216 PF03704 BTAD: Bacterial trans 96.3 0.033 7.2E-07 44.7 8.9 105 5-110 2-139 (146)
217 COG4235 Cytochrome c biogenesi 96.3 0.088 1.9E-06 46.6 11.7 99 172-272 155-258 (287)
218 KOG3941 Intermediate in Toll s 96.2 0.052 1.1E-06 47.4 9.9 100 24-123 52-174 (406)
219 KOG1920 IkappaB kinase complex 96.2 0.88 1.9E-05 47.8 20.0 82 179-267 971-1052(1265)
220 PRK15331 chaperone protein Sic 96.1 0.091 2E-06 42.4 10.0 84 47-132 47-130 (165)
221 PF13424 TPR_12: Tetratricopep 96.0 0.017 3.8E-07 40.6 5.3 25 175-199 48-72 (78)
222 KOG0550 Molecular chaperone (D 96.0 0.56 1.2E-05 43.5 15.6 253 15-272 58-352 (486)
223 KOG0543 FKBP-type peptidyl-pro 96.0 0.087 1.9E-06 48.5 10.5 118 14-133 216-352 (397)
224 PF13424 TPR_12: Tetratricopep 95.9 0.013 2.9E-07 41.2 4.3 20 179-198 11-30 (78)
225 PF13281 DUF4071: Domain of un 95.9 0.9 1.9E-05 42.3 16.8 160 42-201 146-333 (374)
226 COG0457 NrfG FOG: TPR repeat [ 95.8 0.99 2.2E-05 38.4 27.2 83 219-301 177-262 (291)
227 KOG0543 FKBP-type peptidyl-pro 95.7 0.24 5.3E-06 45.7 12.4 96 209-304 257-355 (397)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.082 1.8E-06 49.8 9.6 63 170-235 72-138 (453)
229 KOG1538 Uncharacterized conser 95.7 1.6 3.6E-05 42.9 18.1 252 38-306 557-848 (1081)
230 KOG3941 Intermediate in Toll s 95.7 0.15 3.2E-06 44.7 10.1 101 125-226 52-175 (406)
231 PF07079 DUF1347: Protein of u 95.6 2.1 4.5E-05 40.4 25.2 73 228-301 443-521 (549)
232 PRK09687 putative lyase; Provi 95.6 1.7 3.6E-05 39.3 26.9 240 27-285 27-277 (280)
233 KOG2610 Uncharacterized conser 95.6 0.43 9.3E-06 43.0 12.9 157 151-310 116-282 (491)
234 COG3118 Thioredoxin domain-con 95.5 1.6 3.5E-05 38.8 16.3 155 145-301 141-299 (304)
235 COG4105 ComL DNA uptake lipopr 95.4 1.4 2.9E-05 38.5 15.2 68 37-104 34-103 (254)
236 PF04053 Coatomer_WDAD: Coatom 95.4 0.69 1.5E-05 44.5 14.8 57 106-167 346-402 (443)
237 COG0457 NrfG FOG: TPR repeat [ 95.4 1.5 3.3E-05 37.2 24.0 222 50-273 36-268 (291)
238 PF04053 Coatomer_WDAD: Coatom 95.3 1 2.3E-05 43.3 15.9 162 45-239 269-432 (443)
239 COG5107 RNA14 Pre-mRNA 3'-end 95.3 0.38 8.1E-06 45.1 12.0 144 107-255 397-549 (660)
240 PF10300 DUF3808: Protein of u 95.3 1.3 2.8E-05 43.3 16.7 159 142-303 192-375 (468)
241 PF08631 SPO22: Meiosis protei 95.2 2.3 4.9E-05 38.4 22.4 117 17-134 4-148 (278)
242 COG3118 Thioredoxin domain-con 95.2 2.2 4.8E-05 38.0 18.0 137 81-220 143-283 (304)
243 PF04184 ST7: ST7 protein; In 95.2 2.4 5.2E-05 40.6 17.0 143 43-200 174-322 (539)
244 PF13512 TPR_18: Tetratricopep 95.2 0.54 1.2E-05 37.1 11.0 66 220-285 21-92 (142)
245 smart00299 CLH Clathrin heavy 95.1 1.3 2.8E-05 35.1 14.1 42 77-119 12-53 (140)
246 KOG1130 Predicted G-alpha GTPa 94.9 0.18 3.9E-06 46.5 8.6 220 81-301 26-301 (639)
247 PF10300 DUF3808: Protein of u 94.8 3.5 7.6E-05 40.3 18.2 127 76-202 192-334 (468)
248 COG1729 Uncharacterized protei 94.8 0.25 5.4E-06 43.3 9.1 90 211-303 144-243 (262)
249 PF09205 DUF1955: Domain of un 94.7 1.5 3.3E-05 33.9 14.9 139 150-307 14-152 (161)
250 smart00299 CLH Clathrin heavy 94.6 1.8 3.9E-05 34.3 14.5 120 113-252 13-136 (140)
251 COG1729 Uncharacterized protei 94.6 0.49 1.1E-05 41.5 10.4 88 186-273 154-247 (262)
252 PF02259 FAT: FAT domain; Int 94.5 4.1 8.8E-05 38.0 19.2 262 12-287 4-304 (352)
253 KOG1941 Acetylcholine receptor 94.5 1.9 4.1E-05 39.4 14.0 44 48-91 17-62 (518)
254 COG4105 ComL DNA uptake lipopr 94.5 3 6.6E-05 36.4 18.3 56 249-304 175-233 (254)
255 PF09205 DUF1955: Domain of un 94.5 1.8 3.9E-05 33.6 13.0 66 139-206 87-152 (161)
256 PF13512 TPR_18: Tetratricopep 94.4 1.5 3.3E-05 34.6 11.7 113 145-274 17-132 (142)
257 PF04184 ST7: ST7 protein; In 94.1 3.6 7.7E-05 39.5 15.5 157 144-312 174-332 (539)
258 KOG2280 Vacuolar assembly/sort 94.1 7.3 0.00016 39.2 18.4 243 6-265 507-794 (829)
259 KOG2114 Vacuolar assembly/sort 94.0 8.3 0.00018 39.4 18.5 173 11-199 339-516 (933)
260 COG3629 DnrI DNA-binding trans 93.7 0.38 8.2E-06 42.8 8.2 61 243-303 155-215 (280)
261 PRK11906 transcriptional regul 93.7 1.3 2.8E-05 42.1 12.0 114 188-301 273-398 (458)
262 KOG4555 TPR repeat-containing 93.7 1.7 3.6E-05 33.6 10.4 86 148-234 53-140 (175)
263 PF00515 TPR_1: Tetratricopept 93.6 0.12 2.6E-06 29.4 3.4 32 242-273 2-33 (34)
264 KOG2114 Vacuolar assembly/sort 93.6 4.5 9.7E-05 41.2 15.8 179 74-267 336-516 (933)
265 PF13170 DUF4003: Protein of u 93.4 2.6 5.6E-05 38.3 13.2 50 53-102 78-133 (297)
266 PF08631 SPO22: Meiosis protei 93.3 6 0.00013 35.7 23.9 52 48-100 4-64 (278)
267 PF07719 TPR_2: Tetratricopept 93.3 0.21 4.5E-06 28.2 4.1 31 243-273 3-33 (34)
268 PF13428 TPR_14: Tetratricopep 93.2 0.32 6.8E-06 29.7 5.0 28 39-66 3-30 (44)
269 COG3947 Response regulator con 93.2 5.9 0.00013 35.3 15.7 147 154-302 149-340 (361)
270 KOG4555 TPR repeat-containing 93.1 0.98 2.1E-05 34.9 8.3 88 218-305 52-145 (175)
271 KOG2041 WD40 repeat protein [G 93.1 11 0.00023 37.9 21.6 110 19-134 747-879 (1189)
272 COG4649 Uncharacterized protei 93.0 1.2 2.7E-05 36.2 9.2 137 35-172 57-201 (221)
273 KOG4570 Uncharacterized conser 92.6 0.56 1.2E-05 41.9 7.3 49 52-100 115-163 (418)
274 PF13170 DUF4003: Protein of u 92.6 4 8.8E-05 37.1 13.2 127 88-217 78-225 (297)
275 COG5107 RNA14 Pre-mRNA 3'-end 92.5 10 0.00022 36.0 19.2 133 137-273 396-534 (660)
276 KOG2610 Uncharacterized conser 92.3 1.7 3.8E-05 39.2 10.1 115 185-301 115-235 (491)
277 PF13176 TPR_7: Tetratricopept 92.1 0.39 8.4E-06 27.8 4.1 25 140-164 1-25 (36)
278 PF13176 TPR_7: Tetratricopept 92.0 0.41 8.9E-06 27.7 4.2 26 39-64 1-26 (36)
279 TIGR02508 type_III_yscG type I 92.0 3.6 7.7E-05 30.1 9.5 88 87-178 20-107 (115)
280 KOG1941 Acetylcholine receptor 91.7 8.6 0.00019 35.4 13.7 218 18-235 18-272 (518)
281 PRK11906 transcriptional regul 91.5 13 0.00029 35.5 17.1 27 38-64 252-285 (458)
282 PF02284 COX5A: Cytochrome c o 91.5 1.7 3.8E-05 31.8 7.5 63 153-217 25-87 (108)
283 PF10602 RPN7: 26S proteasome 91.4 6.5 0.00014 32.7 12.3 56 109-164 38-99 (177)
284 PF09613 HrpB1_HrpK: Bacterial 91.4 6.6 0.00014 31.8 12.6 89 181-272 18-108 (160)
285 PF02259 FAT: FAT domain; Int 91.4 12 0.00026 34.8 18.4 68 239-306 144-215 (352)
286 KOG1585 Protein required for f 91.3 9.3 0.0002 33.2 17.1 83 215-298 156-250 (308)
287 PRK11619 lytic murein transgly 91.1 20 0.00043 36.7 27.9 49 253-301 324-372 (644)
288 COG4649 Uncharacterized protei 91.0 7.7 0.00017 31.8 11.6 121 148-269 68-195 (221)
289 KOG1586 Protein required for f 90.9 9.9 0.00021 32.8 13.2 21 251-271 164-184 (288)
290 COG3629 DnrI DNA-binding trans 90.9 3.5 7.6E-05 36.8 10.5 77 39-116 155-236 (280)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 90.8 2.2 4.8E-05 31.0 7.5 63 153-217 22-84 (103)
292 PF13431 TPR_17: Tetratricopep 90.6 0.49 1.1E-05 27.0 3.4 31 96-127 3-33 (34)
293 KOG0276 Vesicle coat complex C 90.3 3.8 8.2E-05 40.2 10.8 150 18-199 598-747 (794)
294 COG4785 NlpI Lipoprotein NlpI, 90.2 11 0.00024 32.2 14.7 162 137-305 98-267 (297)
295 PF07079 DUF1347: Protein of u 90.0 18 0.0004 34.4 20.6 252 16-274 16-331 (549)
296 TIGR02508 type_III_yscG type I 89.7 2.9 6.2E-05 30.6 7.3 50 47-102 49-98 (115)
297 KOG4234 TPR repeat-containing 89.4 1.6 3.4E-05 36.5 6.6 87 219-305 105-198 (271)
298 PF00515 TPR_1: Tetratricopept 89.4 0.97 2.1E-05 25.5 4.1 28 139-166 2-29 (34)
299 PF10602 RPN7: 26S proteasome 89.3 7.2 0.00016 32.4 10.8 63 38-100 37-101 (177)
300 KOG1920 IkappaB kinase complex 89.3 31 0.00068 37.0 17.0 79 145-235 972-1052(1265)
301 PF07035 Mic1: Colon cancer-as 88.8 12 0.00026 30.7 15.9 136 158-306 14-151 (167)
302 PF13181 TPR_8: Tetratricopept 88.4 0.71 1.5E-05 26.0 3.1 30 243-272 3-32 (34)
303 KOG1258 mRNA processing protei 88.3 28 0.0006 34.4 18.1 122 5-127 296-420 (577)
304 PF11207 DUF2989: Protein of u 87.9 4.7 0.0001 33.9 8.6 69 89-158 123-198 (203)
305 KOG0991 Replication factor C, 87.9 15 0.00032 31.8 11.5 148 12-184 136-283 (333)
306 PRK09687 putative lyase; Provi 87.8 21 0.00045 32.3 28.2 217 69-303 34-262 (280)
307 PRK15180 Vi polysaccharide bio 87.4 2.7 5.9E-05 39.9 7.6 121 150-274 301-424 (831)
308 PF09613 HrpB1_HrpK: Bacterial 87.3 5.2 0.00011 32.3 8.2 79 211-289 9-92 (160)
309 PF09477 Type_III_YscG: Bacter 87.0 11 0.00023 28.1 9.3 89 85-177 19-107 (116)
310 PRK13800 putative oxidoreducta 86.6 50 0.0011 35.5 26.8 255 26-302 624-879 (897)
311 PF13374 TPR_10: Tetratricopep 86.4 2 4.4E-05 25.3 4.5 28 38-65 3-30 (42)
312 PF13929 mRNA_stabil: mRNA sta 86.4 12 0.00025 33.5 10.6 113 154-266 144-263 (292)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 86.3 6 0.00013 28.8 7.2 58 55-114 25-83 (103)
314 PF13374 TPR_10: Tetratricopep 86.3 1.9 4.2E-05 25.4 4.4 28 139-166 3-30 (42)
315 PF07719 TPR_2: Tetratricopept 86.1 2 4.3E-05 24.0 4.1 27 140-166 3-29 (34)
316 TIGR02561 HrpB1_HrpK type III 85.8 3.5 7.6E-05 32.8 6.4 50 221-272 22-75 (153)
317 PF00637 Clathrin: Region in C 85.8 0.32 6.9E-06 38.8 0.7 53 79-131 14-66 (143)
318 KOG4570 Uncharacterized conser 85.1 9 0.0002 34.5 9.2 98 101-202 58-164 (418)
319 KOG4648 Uncharacterized conser 85.0 3.5 7.6E-05 37.5 6.7 44 147-192 106-150 (536)
320 PF07035 Mic1: Colon cancer-as 84.7 21 0.00045 29.3 14.2 130 58-199 15-146 (167)
321 KOG1585 Protein required for f 84.4 27 0.00059 30.5 12.4 113 176-300 94-215 (308)
322 PF00637 Clathrin: Region in C 84.2 1.3 2.7E-05 35.3 3.6 84 43-133 13-96 (143)
323 PF02284 COX5A: Cytochrome c o 84.2 6.8 0.00015 28.9 6.7 59 55-114 28-86 (108)
324 KOG2297 Predicted translation 84.0 32 0.0007 31.0 13.0 44 37-82 111-156 (412)
325 PF07163 Pex26: Pex26 protein; 83.9 13 0.00029 32.9 9.6 88 145-235 90-184 (309)
326 KOG2066 Vacuolar assembly/sort 83.8 56 0.0012 33.5 21.5 31 108-138 506-536 (846)
327 COG1747 Uncharacterized N-term 82.8 49 0.0011 32.2 21.0 157 38-201 67-233 (711)
328 PF11207 DUF2989: Protein of u 82.7 14 0.0003 31.2 9.0 74 155-229 123-198 (203)
329 KOG1464 COP9 signalosome, subu 82.1 36 0.00078 30.2 13.3 255 3-264 23-326 (440)
330 KOG4648 Uncharacterized conser 82.0 2.8 6.1E-05 38.0 5.0 92 181-275 105-199 (536)
331 KOG4234 TPR repeat-containing 81.1 11 0.00024 31.7 7.7 84 84-167 107-197 (271)
332 PF07721 TPR_4: Tetratricopept 80.8 2.4 5.3E-05 22.3 2.7 23 277-299 3-25 (26)
333 KOG1258 mRNA processing protei 80.3 65 0.0014 32.0 27.9 121 183-306 376-509 (577)
334 COG4455 ImpE Protein of avirul 79.3 11 0.00025 32.1 7.3 57 142-199 5-61 (273)
335 PF13181 TPR_8: Tetratricopept 79.2 5.9 0.00013 22.0 4.3 27 39-65 3-29 (34)
336 KOG0890 Protein kinase of the 78.9 1.4E+02 0.0031 35.1 24.7 64 241-306 1670-1733(2382)
337 KOG1550 Extracellular protein 78.7 77 0.0017 31.9 14.7 176 88-270 228-426 (552)
338 smart00028 TPR Tetratricopepti 78.4 4.3 9.3E-05 21.4 3.6 28 245-272 5-32 (34)
339 PRK15180 Vi polysaccharide bio 78.4 27 0.00058 33.6 10.2 141 183-327 299-441 (831)
340 COG4455 ImpE Protein of avirul 78.0 8.8 0.00019 32.7 6.3 72 212-283 4-80 (273)
341 PF13174 TPR_6: Tetratricopept 77.7 3.7 7.9E-05 22.6 3.0 22 145-166 7-28 (33)
342 PF04190 DUF410: Protein of un 77.3 53 0.0011 29.3 18.4 159 18-202 2-170 (260)
343 COG4785 NlpI Lipoprotein NlpI, 77.0 47 0.001 28.5 16.5 158 37-201 99-265 (297)
344 KOG0276 Vesicle coat complex C 76.9 34 0.00075 33.9 10.7 133 7-164 615-747 (794)
345 PF13174 TPR_6: Tetratricopept 76.8 3.8 8.1E-05 22.5 2.9 23 250-272 9-31 (33)
346 TIGR02561 HrpB1_HrpK type III 76.8 37 0.00079 27.2 11.7 53 184-239 21-74 (153)
347 PF13762 MNE1: Mitochondrial s 76.3 37 0.00081 27.0 10.8 50 137-186 78-128 (145)
348 KOG4077 Cytochrome c oxidase, 75.9 20 0.00043 27.7 7.1 72 155-237 66-137 (149)
349 PF11768 DUF3312: Protein of u 75.7 44 0.00095 32.9 11.2 24 111-134 412-435 (545)
350 PF10579 Rapsyn_N: Rapsyn N-te 75.7 8.6 0.00019 26.8 4.8 47 185-231 18-65 (80)
351 PF14853 Fis1_TPR_C: Fis1 C-te 75.1 3.5 7.6E-05 26.4 2.6 31 247-277 7-37 (53)
352 KOG1586 Protein required for f 74.8 57 0.0012 28.4 17.5 87 187-273 128-227 (288)
353 COG2909 MalT ATP-dependent tra 73.9 1.2E+02 0.0026 31.8 20.5 193 118-314 426-657 (894)
354 TIGR03504 FimV_Cterm FimV C-te 73.4 9.1 0.0002 23.4 4.0 24 43-66 5-28 (44)
355 TIGR03504 FimV_Cterm FimV C-te 72.7 8.6 0.00019 23.5 3.8 26 77-102 4-29 (44)
356 PF09670 Cas_Cas02710: CRISPR- 72.1 76 0.0016 30.1 11.9 55 147-202 140-198 (379)
357 PHA02875 ankyrin repeat protei 72.0 49 0.0011 31.6 11.1 19 114-132 72-90 (413)
358 PF11838 ERAP1_C: ERAP1-like C 71.9 81 0.0018 28.9 19.2 83 188-270 145-230 (324)
359 PF04910 Tcf25: Transcriptiona 71.7 90 0.002 29.4 14.6 64 240-303 99-167 (360)
360 PF13762 MNE1: Mitochondrial s 71.5 33 0.00071 27.4 7.8 81 40-120 42-128 (145)
361 PF06552 TOM20_plant: Plant sp 71.1 48 0.001 27.5 8.8 44 257-307 96-139 (186)
362 KOG4507 Uncharacterized conser 70.6 12 0.00027 36.7 6.1 68 215-282 648-717 (886)
363 COG2976 Uncharacterized protei 70.1 66 0.0014 27.1 12.2 128 139-272 55-190 (207)
364 PF10366 Vps39_1: Vacuolar sor 69.7 45 0.00098 25.0 8.1 27 140-166 41-67 (108)
365 PRK12798 chemotaxis protein; R 68.9 1.1E+02 0.0024 29.2 21.1 181 120-303 125-323 (421)
366 KOG1498 26S proteasome regulat 68.9 1E+02 0.0023 28.9 14.3 199 120-325 25-262 (439)
367 KOG3807 Predicted membrane pro 68.8 96 0.0021 28.5 11.6 51 147-199 284-337 (556)
368 PF14853 Fis1_TPR_C: Fis1 C-te 68.4 28 0.00061 22.2 6.6 50 278-353 4-53 (53)
369 PF04097 Nic96: Nup93/Nic96; 68.0 59 0.0013 33.2 10.9 20 220-239 516-535 (613)
370 PRK10941 hypothetical protein; 67.9 30 0.00064 31.0 7.8 61 244-304 184-244 (269)
371 KOG3364 Membrane protein invol 67.8 42 0.00092 26.4 7.4 25 250-274 80-104 (149)
372 PF11838 ERAP1_C: ERAP1-like C 66.9 1E+02 0.0022 28.2 17.1 30 172-201 200-229 (324)
373 PF11663 Toxin_YhaV: Toxin wit 66.5 6.8 0.00015 30.5 3.0 32 150-183 107-138 (140)
374 smart00386 HAT HAT (Half-A-TPR 65.9 11 0.00023 20.4 3.2 29 255-283 1-29 (33)
375 cd08819 CARD_MDA5_2 Caspase ac 65.7 47 0.001 23.8 6.8 33 121-154 50-82 (88)
376 PRK13800 putative oxidoreducta 64.3 2.1E+02 0.0046 30.9 27.2 153 105-268 726-879 (897)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 63.4 59 0.0013 25.2 7.8 42 259-300 81-124 (126)
378 PRK10941 hypothetical protein; 63.3 37 0.00081 30.4 7.5 68 211-278 183-252 (269)
379 COG3947 Response regulator con 63.2 38 0.00082 30.4 7.2 56 76-132 283-338 (361)
380 PF09477 Type_III_YscG: Bacter 62.7 44 0.00096 25.0 6.4 78 19-102 19-99 (116)
381 PF11846 DUF3366: Domain of un 62.4 34 0.00075 28.7 7.0 37 236-272 139-175 (193)
382 PF10579 Rapsyn_N: Rapsyn N-te 62.1 30 0.00064 24.2 5.1 46 150-195 18-65 (80)
383 PF10345 Cohesin_load: Cohesin 61.6 1.9E+02 0.0042 29.5 24.4 263 36-299 58-428 (608)
384 KOG4279 Serine/threonine prote 61.6 1.3E+02 0.0028 31.0 11.2 180 92-274 183-399 (1226)
385 smart00638 LPD_N Lipoprotein N 61.4 1.9E+02 0.0041 29.3 23.3 194 34-235 307-522 (574)
386 KOG4642 Chaperone-dependent E3 61.4 25 0.00054 30.6 5.6 117 182-301 19-143 (284)
387 KOG4077 Cytochrome c oxidase, 60.8 65 0.0014 25.0 7.1 42 58-99 70-111 (149)
388 COG1747 Uncharacterized N-term 60.1 1.8E+02 0.0039 28.6 23.0 159 70-235 64-231 (711)
389 PRK10564 maltose regulon perip 58.9 21 0.00045 32.2 5.0 45 137-181 255-300 (303)
390 PF11846 DUF3366: Domain of un 58.8 40 0.00087 28.3 6.8 31 170-200 141-171 (193)
391 KOG2066 Vacuolar assembly/sort 58.6 1.8E+02 0.0038 30.2 11.7 51 116-166 365-420 (846)
392 COG5159 RPN6 26S proteasome re 58.4 1.4E+02 0.0031 26.9 10.5 124 43-166 9-153 (421)
393 PF14561 TPR_20: Tetratricopep 57.9 22 0.00048 25.6 4.3 46 245-290 26-73 (90)
394 KOG0686 COP9 signalosome, subu 57.1 1.8E+02 0.0039 27.7 14.3 58 8-65 152-215 (466)
395 PHA02875 ankyrin repeat protei 56.4 1.1E+02 0.0024 29.2 10.3 15 219-233 142-156 (413)
396 PRK10564 maltose regulon perip 56.3 24 0.00053 31.8 5.0 38 39-76 259-296 (303)
397 PRK13342 recombination factor 56.2 1.9E+02 0.0042 27.8 16.0 42 141-182 230-274 (413)
398 PF11663 Toxin_YhaV: Toxin wit 55.6 15 0.00033 28.6 3.1 31 50-82 108-138 (140)
399 KOG0292 Vesicle coat complex C 55.6 22 0.00049 36.8 5.1 95 151-269 606-700 (1202)
400 PRK14015 pepN aminopeptidase N 55.3 3E+02 0.0064 29.6 14.4 152 142-297 686-846 (875)
401 COG0735 Fur Fe2+/Zn2+ uptake r 55.1 71 0.0015 25.5 7.2 63 59-122 8-70 (145)
402 KOG2396 HAT (Half-A-TPR) repea 55.0 2.2E+02 0.0047 28.0 21.2 241 54-301 299-556 (568)
403 PF07163 Pex26: Pex26 protein; 54.8 1.6E+02 0.0035 26.4 9.8 50 112-161 123-181 (309)
404 PF14689 SPOB_a: Sensor_kinase 54.7 23 0.0005 23.4 3.6 21 144-164 29-49 (62)
405 PF11525 CopK: Copper resistan 54.3 4.8 0.0001 26.9 0.3 22 406-427 8-29 (73)
406 KOG1550 Extracellular protein 54.0 2.5E+02 0.0053 28.3 20.7 174 22-201 228-425 (552)
407 KOG2396 HAT (Half-A-TPR) repea 52.6 2.4E+02 0.0051 27.7 17.4 233 27-272 303-562 (568)
408 KOG1308 Hsp70-interacting prot 52.3 11 0.00025 34.3 2.4 114 185-301 126-241 (377)
409 PF04097 Nic96: Nup93/Nic96; 52.3 2.8E+02 0.006 28.4 17.6 191 7-201 113-355 (613)
410 KOG0376 Serine-threonine phosp 51.7 12 0.00026 35.7 2.6 94 180-276 11-107 (476)
411 PF10366 Vps39_1: Vacuolar sor 51.7 1E+02 0.0022 23.2 8.1 55 10-65 3-67 (108)
412 KOG2300 Uncharacterized conser 51.1 2.5E+02 0.0054 27.5 19.8 146 22-167 298-474 (629)
413 KOG2908 26S proteasome regulat 50.7 1.7E+02 0.0037 27.1 9.3 70 112-181 80-164 (380)
414 COG2976 Uncharacterized protei 50.5 1.6E+02 0.0034 25.0 15.5 87 114-202 96-188 (207)
415 PF14863 Alkyl_sulf_dimr: Alky 50.0 75 0.0016 25.2 6.4 65 225-292 57-121 (141)
416 PF14689 SPOB_a: Sensor_kinase 49.4 42 0.00091 22.2 4.2 22 77-98 28-49 (62)
417 KOG0687 26S proteasome regulat 49.0 2.2E+02 0.0047 26.3 12.6 107 174-282 105-223 (393)
418 PF06552 TOM20_plant: Plant sp 48.9 1.6E+02 0.0034 24.6 10.7 40 154-201 96-135 (186)
419 PF08424 NRDE-2: NRDE-2, neces 48.5 2.2E+02 0.0048 26.2 16.0 81 36-118 18-110 (321)
420 PF11848 DUF3368: Domain of un 48.4 65 0.0014 20.0 5.3 31 49-79 14-44 (48)
421 KOG4507 Uncharacterized conser 47.8 89 0.0019 31.1 7.6 133 170-305 568-706 (886)
422 PF12069 DUF3549: Protein of u 47.7 2.3E+02 0.0051 26.3 12.8 167 7-185 130-310 (340)
423 KOG2659 LisH motif-containing 47.3 1.9E+02 0.0041 25.1 9.1 15 220-234 114-128 (228)
424 COG5108 RPO41 Mitochondrial DN 46.6 1.3E+02 0.0027 30.6 8.5 23 178-200 33-55 (1117)
425 PF06957 COPI_C: Coatomer (COP 45.4 1.3E+02 0.0028 28.9 8.3 42 232-273 289-332 (422)
426 PF12862 Apc5: Anaphase-promot 45.2 1.2E+02 0.0025 22.0 6.5 54 47-100 8-69 (94)
427 KOG0890 Protein kinase of the 45.2 6.2E+02 0.013 30.4 16.4 82 218-299 1458-1542(2382)
428 PF09986 DUF2225: Uncharacteri 44.8 2E+02 0.0044 24.7 9.1 30 276-305 166-195 (214)
429 PF11817 Foie-gras_1: Foie gra 44.0 97 0.0021 27.3 7.0 56 212-267 181-244 (247)
430 PF05119 Terminase_4: Phage te 43.7 78 0.0017 23.1 5.5 36 328-363 57-92 (100)
431 PF02847 MA3: MA3 domain; Int 43.5 63 0.0014 24.2 5.1 21 43-63 8-28 (113)
432 COG5108 RPO41 Mitochondrial DN 43.5 1.3E+02 0.0027 30.6 7.9 84 11-97 33-128 (1117)
433 TIGR02270 conserved hypothetic 43.0 3.1E+02 0.0068 26.4 24.6 234 44-301 45-278 (410)
434 PF10345 Cohesin_load: Cohesin 42.8 3.9E+02 0.0084 27.3 19.3 80 223-302 153-252 (608)
435 COG5191 Uncharacterized conser 42.7 44 0.00096 30.3 4.4 76 208-283 106-184 (435)
436 PRK09462 fur ferric uptake reg 42.3 1.6E+02 0.0034 23.5 7.4 61 62-123 7-68 (148)
437 KOG2062 26S proteasome regulat 42.2 4.2E+02 0.0091 27.6 13.0 119 147-269 510-634 (929)
438 COG4976 Predicted methyltransf 41.9 60 0.0013 28.2 4.9 52 221-272 7-60 (287)
439 cd00280 TRFH Telomeric Repeat 41.7 1.6E+02 0.0034 24.6 7.1 19 217-235 119-137 (200)
440 KOG0545 Aryl-hydrocarbon recep 41.3 1.9E+02 0.0041 25.5 7.8 86 218-303 187-292 (329)
441 KOG0403 Neoplastic transformat 40.7 3.5E+02 0.0075 26.2 20.0 102 244-353 512-617 (645)
442 TIGR02414 pepN_proteo aminopep 40.6 5E+02 0.011 28.0 14.6 152 142-297 676-836 (863)
443 KOG3824 Huntingtin interacting 39.9 61 0.0013 29.4 4.9 57 221-277 128-186 (472)
444 PF11817 Foie-gras_1: Foie gra 39.3 2.1E+02 0.0046 25.1 8.4 54 178-231 183-240 (247)
445 PF09454 Vps23_core: Vps23 cor 39.0 74 0.0016 21.3 4.1 48 35-83 6-53 (65)
446 PF13646 HEAT_2: HEAT repeats; 39.0 1.3E+02 0.0028 20.8 7.3 63 34-101 11-73 (88)
447 PF12796 Ank_2: Ankyrin repeat 38.6 71 0.0015 22.4 4.5 17 15-31 3-19 (89)
448 PF09670 Cas_Cas02710: CRISPR- 38.3 3.6E+02 0.0077 25.6 12.7 55 46-101 140-198 (379)
449 PF10255 Paf67: RNA polymerase 38.0 1.7E+02 0.0037 27.9 7.9 56 110-165 125-191 (404)
450 smart00804 TAP_C C-terminal do 38.0 26 0.00057 23.3 1.8 24 50-73 38-62 (63)
451 KOG0292 Vesicle coat complex C 37.0 5.5E+02 0.012 27.4 11.5 128 18-167 655-782 (1202)
452 COG0735 Fur Fe2+/Zn2+ uptake r 36.9 1.9E+02 0.0041 23.1 7.0 66 22-87 5-70 (145)
453 KOG4567 GTPase-activating prot 36.3 3.4E+02 0.0074 24.9 10.1 43 159-201 264-306 (370)
454 PF09454 Vps23_core: Vps23 cor 36.1 1.1E+02 0.0024 20.5 4.6 32 137-168 7-38 (65)
455 PF10475 DUF2450: Protein of u 36.0 1.7E+02 0.0037 26.5 7.4 27 136-162 195-221 (291)
456 PF13934 ELYS: Nuclear pore co 35.9 2.9E+02 0.0063 23.9 17.1 106 141-255 79-186 (226)
457 PF07575 Nucleopor_Nup85: Nup8 35.9 1.1E+02 0.0024 30.9 6.8 56 71-128 404-459 (566)
458 KOG0686 COP9 signalosome, subu 35.7 4E+02 0.0087 25.5 13.6 59 108-166 151-215 (466)
459 KOG2471 TPR repeat-containing 35.5 3.2E+02 0.007 26.8 9.0 139 79-220 213-380 (696)
460 KOG2063 Vacuolar assembly/sort 35.4 5.9E+02 0.013 27.3 16.3 25 9-33 507-531 (877)
461 KOG3364 Membrane protein invol 35.4 2.3E+02 0.0049 22.5 7.2 64 170-235 29-97 (149)
462 KOG2422 Uncharacterized conser 35.0 4.8E+02 0.01 26.2 12.5 118 185-302 250-405 (665)
463 KOG0551 Hsp90 co-chaperone CNS 34.7 2.3E+02 0.0049 26.3 7.6 85 216-300 88-178 (390)
464 PF14669 Asp_Glu_race_2: Putat 34.4 2.9E+02 0.0062 23.4 14.6 58 178-235 137-207 (233)
465 PRK11639 zinc uptake transcrip 34.3 1.8E+02 0.0038 23.9 6.6 59 165-225 18-76 (169)
466 PF14044 NETI: NETI protein 34.1 38 0.00082 21.8 2.0 18 341-358 10-27 (57)
467 KOG1464 COP9 signalosome, subu 34.0 3.5E+02 0.0076 24.3 15.8 202 34-235 23-258 (440)
468 smart00777 Mad3_BUB1_I Mad3/BU 33.5 2.1E+02 0.0046 22.1 6.5 42 258-299 80-123 (125)
469 PF02847 MA3: MA3 domain; Int 32.8 1.1E+02 0.0025 22.7 5.0 22 113-134 8-29 (113)
470 PRK11639 zinc uptake transcrip 32.7 1.8E+02 0.004 23.8 6.5 61 63-124 17-77 (169)
471 PF02184 HAT: HAT (Half-A-TPR) 32.5 98 0.0021 17.4 3.3 25 256-281 2-26 (32)
472 KOG0403 Neoplastic transformat 32.3 2.2E+02 0.0048 27.4 7.4 69 10-82 513-584 (645)
473 COG4976 Predicted methyltransf 31.9 95 0.0021 27.0 4.6 55 251-305 5-59 (287)
474 PF09797 NatB_MDM20: N-acetylt 31.8 4.4E+02 0.0095 24.7 23.4 58 179-238 186-246 (365)
475 smart00544 MA3 Domain in DAP-5 31.5 2.2E+02 0.0048 21.2 8.9 23 42-64 7-29 (113)
476 PF00356 LacI: Bacterial regul 31.3 50 0.0011 20.3 2.2 15 342-356 32-46 (46)
477 KOG4642 Chaperone-dependent E3 31.2 3.7E+02 0.008 23.7 9.7 78 120-199 23-104 (284)
478 KOG4814 Uncharacterized conser 31.0 1.6E+02 0.0034 29.8 6.5 84 221-304 366-457 (872)
479 PF02607 B12-binding_2: B12 bi 30.8 1.1E+02 0.0023 21.1 4.2 39 149-187 12-50 (79)
480 PF12926 MOZART2: Mitotic-spin 30.4 2.1E+02 0.0045 20.5 7.3 41 93-133 29-69 (88)
481 PF04090 RNA_pol_I_TF: RNA pol 29.9 3.3E+02 0.0072 23.1 7.5 60 243-302 43-103 (199)
482 PF12862 Apc5: Anaphase-promot 29.9 2.1E+02 0.0046 20.5 7.7 21 181-201 49-69 (94)
483 PRK11619 lytic murein transgly 29.6 6.5E+02 0.014 26.0 25.4 224 86-310 255-511 (644)
484 PF08967 DUF1884: Domain of un 29.4 69 0.0015 22.5 2.8 28 334-361 7-34 (85)
485 KOG4521 Nuclear pore complex, 29.1 8.3E+02 0.018 27.1 14.8 110 113-226 926-1071(1480)
486 cd07153 Fur_like Ferric uptake 29.1 1.5E+02 0.0032 22.3 5.1 46 144-189 6-51 (116)
487 PF07720 TPR_3: Tetratricopept 29.0 1.2E+02 0.0026 17.4 4.0 14 250-263 10-23 (36)
488 PF12926 MOZART2: Mitotic-spin 28.7 2.2E+02 0.0048 20.4 6.3 43 159-201 29-71 (88)
489 cd08326 CARD_CASP9 Caspase act 28.6 1.1E+02 0.0023 21.8 3.9 61 27-91 20-80 (84)
490 PF13934 ELYS: Nuclear pore co 28.5 3.9E+02 0.0085 23.2 16.1 133 100-243 72-206 (226)
491 TIGR02328 conserved hypothetic 28.5 69 0.0015 24.1 2.8 24 337-360 50-73 (120)
492 TIGR02270 conserved hypothetic 28.4 5.4E+02 0.012 24.8 23.1 230 13-265 45-276 (410)
493 cd08819 CARD_MDA5_2 Caspase ac 28.0 2.3E+02 0.005 20.4 7.6 66 56-127 21-86 (88)
494 cd07153 Fur_like Ferric uptake 27.8 1.7E+02 0.0036 21.9 5.2 32 90-121 18-49 (116)
495 COG2178 Predicted RNA-binding 27.7 3.8E+02 0.0082 22.7 9.1 52 116-167 38-98 (204)
496 cd08326 CARD_CASP9 Caspase act 27.5 2.3E+02 0.005 20.1 6.4 35 121-155 44-78 (84)
497 KOG3824 Huntingtin interacting 27.2 1.1E+02 0.0023 27.9 4.3 53 184-239 127-181 (472)
498 COG0790 FOG: TPR repeat, SEL1 26.9 4.6E+02 0.01 23.4 19.2 84 84-170 53-145 (292)
499 KOG4279 Serine/threonine prote 26.5 5.1E+02 0.011 27.0 9.1 27 140-166 203-229 (1226)
500 PF01475 FUR: Ferric uptake re 26.1 1.3E+02 0.0029 22.8 4.3 48 142-189 11-58 (120)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.7e-96 Score=740.86 Aligned_cols=430 Identities=38% Similarity=0.687 Sum_probs=423.9
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
|+.||..+||+||++|+++|++++|.++|+.|+++|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+|++.|++++|.++|+.|.+.|++||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|++.|+
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~ 493 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT 493 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQ 320 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~ 320 (430)
..+|++|+.+|+.+|+++.|..+++++.+++|.+..+|..|+++|++.|+|++|.++++.|+++|+.+.|++||+++++.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~ 573 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCe
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchhhhhhhcccccHHHHHHHhhhhcc----ceee--
Q 043370 321 VHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKHHSEKLAIAFAEHTRG----LIVM-- 394 (430)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~l~~~~e~la~~~~l~~~~----~~~~-- 394 (430)
+|.|.+|+..||+..+|+..|+++..+|++.||.||+.++++++++++|+..+.+||||||++|||+++| |||+
T Consensus 574 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~kn 653 (697)
T PLN03081 574 DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQS 653 (697)
T ss_pred EEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 6766
Q ss_pred --------chhhhhhhccCceEEEecCCccccccccccccCCCC
Q 043370 395 --------LPFKYISEIKNREIIVRDASRFHHFRNGKCSCGDYW 430 (430)
Q Consensus 395 --------~~~k~is~~~~~~~~~~~~~~~h~f~~g~csc~~~~ 430 (430)
+++|+||++++|+|||||.+|||||++|+|||+|||
T Consensus 654 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 654 HRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 899999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-89 Score=707.54 Aligned_cols=425 Identities=37% Similarity=0.690 Sum_probs=415.5
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
|+.||..+||+||++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||++++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999986 58999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|+++||
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999997789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQ 320 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~ 320 (430)
..+|++|+.+|..+|+.+.|+.+.+++.+++|++...|..|.+.|+..|+|++|.++++.|+++|++++|++||+++++.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchhhhhhhcccccHHHHHHHhhhhcc----ceee--
Q 043370 321 VHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNLKHHSEKLAIAFAEHTRG----LIVM-- 394 (430)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~l~~~~e~la~~~~l~~~~----~~~~-- 394 (430)
+|.|..+|.+||+.++||..|+++..+|++.||.||+..++ ++++++|+..+.+||||||+||||++|| |||+
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~kn 815 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKN 815 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCC
Confidence 99999999999999999999999999999999999999887 5578899999999999999999999998 6666
Q ss_pred --------chhhhhhhccCceEEEecCCccccccccccccCC
Q 043370 395 --------LPFKYISEIKNREIIVRDASRFHHFRNGKCSCGD 428 (430)
Q Consensus 395 --------~~~k~is~~~~~~~~~~~~~~~h~f~~g~csc~~ 428 (430)
+++|+||++++|+|||||.+|||||++|+|||+|
T Consensus 816 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 816 LYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 8999999999999999999999999999999998
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-54 Score=440.99 Aligned_cols=349 Identities=23% Similarity=0.337 Sum_probs=320.1
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
|+.||+.+||+|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+|++.|..+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d 390 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKN 390 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCC
Confidence 999999999999999999999999999999999999999887 999999999999999999999999999999996 589
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhccchhHHHHHHHHHHh-CCCCCCCceeEEEE
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGV--NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE-RNVKKEPGVSWLEI 317 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~i 317 (430)
..+|++||.+|+++|+.++|.++|++|.+. .| |..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+...+...+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 999999999999999999999999999854 45 999999999999999999999999999975 68888764433322
Q ss_pred CCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchh
Q 043370 318 KNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSE 367 (430)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~ 367 (430)
.+....++.++++ +.+++.++.|+..++..-+..+
T Consensus 470 --------~~l~r~G~~~eA~-------~~~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 470 --------ELLGREGLLDEAY-------AMIRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred --------HHHHhcCCHHHHH-------HHHHHCCCCCCHHHHHHHHHHH
Confidence 3334455555554 3345678889886544333333
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-54 Score=450.58 Aligned_cols=398 Identities=23% Similarity=0.357 Sum_probs=352.4
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
|+.||+.++|+||++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+|++.|+++.|.++|..|.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKAN 240 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 240 (430)
|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++|++|+ +||
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d 454 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKD 454 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Confidence 999999999999999999999999999999999999999887 999999999999999999999999999999997 479
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQ 320 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~ 320 (430)
..+|+++|.+|++.|+.++|..+|++|.+..++|..+|..++.+|++.|..+.+.+++..|.+.|+.++.......+...
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 99999999999999999999999999985544599999999999999999999999999999999877654332221100
Q ss_pred ----------------------EEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchhhhhhhc---cc
Q 043370 321 ----------------------VHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEKEYNL---KH 375 (430)
Q Consensus 321 ----------------------~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~l---~~ 375 (430)
....+.++..|++..++. +++++|++.|+.||..++...+..+.+.+.+ ..
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 001134455677766666 8899999999999999988777777766554 33
Q ss_pred ccHHHHHHHhhhhcc---ceee----------chhhhhhhcc
Q 043370 376 HSEKLAIAFAEHTRG---LIVM----------LPFKYISEIK 404 (430)
Q Consensus 376 ~~e~la~~~~l~~~~---~~~~----------~~~k~is~~~ 404 (430)
..+.+.-.+|+.++. -+++ +|.+++.+++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 445555457776664 1111 6777777764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-53 Score=433.81 Aligned_cols=358 Identities=17% Similarity=0.239 Sum_probs=321.3
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCC----CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP----IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV 76 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 76 (430)
|+.||..+||+||++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999999999999999997 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH--cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHh
Q 043370 77 SVISSCSELATLGQGQQIHAEVVK--AGASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDVVLWSSMIAAYGF 150 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~ 150 (430)
+++.+|++.|++++|.++|++|.+ .|+.||..+|++|+++|+++|++++|.++|++|. .++..+||++|.+|++
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 999999999999999999999986 6789999999999999999999999999999997 4577999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|++||.+|+++|++++|.+
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887 999999999999999999999999999
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 231 LIRNM---PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGV--NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 231 ~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+|++| ++.||..+|++||.+|++.|++++|.++|++|.+. .| |..+|..|+.+|.+.|++++|.+++++|.+.|
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99998 68899999999999999999999999999999854 45 89999999999999999999999999999999
Q ss_pred CCCCCceeEEEEC-------------CEEEEEEeCCCCCCCc-hHHHHHHHHHHHHHHHcCcccCCCCcccc
Q 043370 306 VKKEPGVSWLEIK-------------NQVHQFTMGDKSHPRS-MEIDLYLEELTSEMKLRGYVPDTGADMHD 363 (430)
Q Consensus 306 ~~~~~~~~~~~i~-------------~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~m~~~g~~p~~~~~~~~ 363 (430)
+.|+..++...++ ..+..|-.+ +++. .......-.++++|.+.|+.||..++...
T Consensus 785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 9988754433221 011111111 1111 01112234889999999999998765443
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-51 Score=421.58 Aligned_cols=344 Identities=18% Similarity=0.262 Sum_probs=318.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCC----CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP----IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
.||..+|+.||.+|++.|+++.|.++|+.|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4899999999999999999999999999996 579999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC------CCCHhHHHHHHHHHHhcC
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE------YSDVVLWSSMIAAYGFHG 152 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~d~~~~~~li~~~~~~g 152 (430)
|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999984 579999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALI 232 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 232 (430)
++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|++|+++|++.|++++|.++|
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 99999999999999999999999999999
Q ss_pred HhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 233 RNM---PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGV--NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 233 ~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
++| ++.||..+|++||.+|++.|++++|.++|++|.+. .| +..+|+.|+.+|++.|++++|.+++++|.+.|+.
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999 78899999999999999999999999999999754 45 8899999999999999999999999999999998
Q ss_pred CCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCc
Q 043370 308 KEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGAD 360 (430)
Q Consensus 308 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~ 360 (430)
|+..++...+ .+....+..+++. +++.+|++.|+.||....
T Consensus 752 Pd~~Ty~sLL--------~a~~k~G~le~A~----~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 752 PNTITYSILL--------VASERKDDADVGL----DLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred CCHHHHHHHH--------HHHHHCCCHHHHH----HHHHHHHHcCCCCCHHHH
Confidence 8875544433 3334455555544 899999999999997543
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.2e-21 Score=186.84 Aligned_cols=297 Identities=11% Similarity=0.071 Sum_probs=246.9
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--C-CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPI--R-NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD---KITFVSVISSCSEL 85 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~ 85 (430)
....+...|++++|...|+++.. | +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456788999999999999863 3 556899999999999999999999999987542222 25678889999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--------HhHHHHHHHHHHhcCChHHH
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD--------VVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d--------~~~~~~li~~~~~~g~~~~A 157 (430)
|+++.|..+|.++.+.. +++..+++.++..|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 4478899999999999999999999999875321 22456778888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +.......++.++.+|.+.|++++|...++++ .
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998763 334567788889999999999999999999864 21222466888999999999999999999998 5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh---ccchhHHHHHHHHHHhCCCCCCCce
Q 043370 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS---AKRWQGVSEFREAMRERNVKKEPGV 312 (430)
Q Consensus 237 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 312 (430)
..|+...+..+...+.+.|++++|..+++++.+..| +...+..++..+.. .|+.+++..++++|.++++.++|..
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 567777778888899999999999999999999999 44567777766654 5689999999999999999999863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=4.1e-20 Score=194.71 Aligned_cols=296 Identities=11% Similarity=0.081 Sum_probs=233.9
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
.+...+..++..|.+.|++++|..+++.+. ..+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345667788888999999999999888775 3467788888899999999999999998888754 446677888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A 157 (430)
++...|++++|...++.+.+.. +.+..++..++..+.+.|++++|.++++.+.. .+...+..+...+...|++++|
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH
Confidence 8888899999999998888764 33677888888888888888888888888753 3667778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+. .+.+...+..+...|.+.|++++|...|+++ .
T Consensus 723 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 723 IQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 8888888775 355567777888888888888888888888763 3456777888888888888888888888877 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 237 VK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 237 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
.. ++..+++.+...+...|+ ++|+..++++.+..|+++..+..+..+|...|++++|.+.++++.+.+.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33 356777777777888887 7788888888877787777777888888888888888888888876553
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=1.1e-19 Score=191.55 Aligned_cols=294 Identities=12% Similarity=0.061 Sum_probs=256.8
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
.+..++..+...|.+.|+.++|...|+++. ..+...+..++..|.+.|++++|+.+++++.+.. +.+..+|..+..
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 456788899999999999999999999874 3466788889999999999999999999998754 667888999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A 157 (430)
++...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++. +.+..+|..++..+...|++++|
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998865 3467888899999999999999999998865 34678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
.++++.+.+.+ +++...+..+...+...|++++|...|..+... .|+..++..+..++.+.|++++|.+.++++ .
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998875 567778888889999999999999999998754 466678888999999999999999999887 3
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 237 VK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 237 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.. .+...+..+...|...|+.++|...++++.+..|+++.++..++..+...|+ .+|...+++..+.
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 33 3677888888889999999999999999999999999999999999999999 8899999988764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.7e-20 Score=175.76 Aligned_cols=303 Identities=11% Similarity=0.050 Sum_probs=237.6
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHh
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD---VGVISSLISMYSR 119 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~ 119 (430)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999874 44566889999999999999999999999988643322 3567889999999
Q ss_pred cCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhhcCcHHHH
Q 043370 120 CGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND----VTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 192 (430)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..++. ..+..+...+...|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999864 46789999999999999999999999999886533322 2355677788899999999
Q ss_pred HHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 193 MEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
..+++++.+. .+.+...+..+...|.+.|++++|.++++++ ...|+ ..++..+..+|...|+.++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999864 2334667888999999999999999999998 33454 45688899999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 043370 270 VNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMK 349 (430)
Q Consensus 270 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 349 (430)
..|+ ...+..++..+.+.|++++|..+++++.+.. |+.......+.. ......+++..+.. .++++|.
T Consensus 278 ~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~-----~~~~~~~g~~~~a~----~~~~~~~ 345 (389)
T PRK11788 278 EYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDY-----HLAEAEEGRAKESL----LLLRDLV 345 (389)
T ss_pred hCCC-chHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHH-----hhhccCCccchhHH----HHHHHHH
Confidence 9994 4566899999999999999999999887653 332111101100 00011234455555 5677788
Q ss_pred HcCcccCCCCc
Q 043370 350 LRGYVPDTGAD 360 (430)
Q Consensus 350 ~~g~~p~~~~~ 360 (430)
+.+++||+.++
T Consensus 346 ~~~~~~~p~~~ 356 (389)
T PRK11788 346 GEQLKRKPRYR 356 (389)
T ss_pred HHHHhCCCCEE
Confidence 88888887744
No 11
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.88 E-value=3.8e-23 Score=157.29 Aligned_cols=98 Identities=58% Similarity=0.880 Sum_probs=87.3
Q ss_pred ceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchhhh--------hhhcccccHHHHH
Q 043370 311 GVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSEEK--------EYNLKHHSEKLAI 382 (430)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~l~~~~e~la~ 382 (430)
+++|+++ |.|.+|+.+||+. ++..+|...||.|+...+.++++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5788887 9999999999998 566788889999999999988877765 5688999999999
Q ss_pred HHhhhhcc----c-eee----chhhhhhhccCceEEEecCCcccccc
Q 043370 383 AFAEHTRG----L-IVM----LPFKYISEIKNREIIVRDASRFHHFR 420 (430)
Q Consensus 383 ~~~l~~~~----~-~~~----~~~k~is~~~~~~~~~~~~~~~h~f~ 420 (430)
||||+++. . ||+ +++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINTRVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HhcccceeEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999963 4 676 89999999999999999999999996
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=5.1e-17 Score=163.18 Aligned_cols=292 Identities=10% Similarity=-0.051 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE 84 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 84 (430)
....++..+...|++++|...|+++.. .+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++..
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVL 156 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 444555666678888888888887752 356677778888888888888888888887752 3345667777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CHhHHHHHHHHHHhcCChHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS----DVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
.|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+. +...+..+...+.+.|++++|+..
T Consensus 157 ~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 157 MDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888877665443 33333333 3467788888888888775432 233445556777888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH----HHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEK----GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM- 235 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 235 (430)
|++..+.. +.+...+..+...+...|+.++ |...|++..+. .+.+...+..+...+.+.|++++|...+++.
T Consensus 235 ~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 235 GESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88887753 3345667777788888888875 78888887753 2235677888888888888888888888877
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 236 PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 236 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
...| +...+..+...+...|++++|...++++.+.+|.+...+..+..++...|++++|...++...+..
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4445 355666777778888888888888888888888666656666778888888888888888876543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=2.2e-16 Score=158.60 Aligned_cols=289 Identities=9% Similarity=-0.046 Sum_probs=222.2
Q ss_pred HHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
++..+.+.|++++|..+++... ..+...+..++.+....|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 4556677889999988887764 2345566667777788999999999999988763 44566777788888888999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
++|...++++.+.. +.+..++..+...+...|+.++|...++.+. ..+...+..+ ..+.+.|++++|+..++.+.
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 99999998888763 3367788888888999999999988887653 2234444333 34778899999999998887
Q ss_pred HCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH----HHHHHHhC-CCCC-
Q 043370 166 QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE----AAALIRNM-PVKA- 239 (430)
Q Consensus 166 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~~~p- 239 (430)
+....++......+..++...|+.++|...++.+... .+.+...+..+..+|.+.|++++ |...|++. ...|
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 7643344455555667788889999999999888753 23356777888888888898885 78888877 4455
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+...+..+...+...|++++|...++++.+++|.++..+..+..+|...|++++|...++.+.+.+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 466788888888889999999999999988888888888888889999999999998888887643
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=8.4e-16 Score=154.61 Aligned_cols=224 Identities=12% Similarity=-0.001 Sum_probs=121.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcC
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHG 152 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g 152 (430)
..+...+...|++++|...+++.++... .+...|..+...+...|++++|...|++.. +.+...|..+...+...|
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3333344445555555555555554321 134455555555555566666655555432 234555555666666666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALI 232 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 232 (430)
++++|+..|++..+.. +.+...+..+...+.+.|++++|...|+...+. .+.+...++.+..++...|++++|.+.|
T Consensus 414 ~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666665542 223444555555566666666666666665542 1223455666666666666666666666
Q ss_pred HhC-CCCCCH-H-------HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 233 RNM-PVKANA-I-------IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 233 ~~m-~~~p~~-~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
++. ...|+. . .++..+..+...|++++|..++++.++++|.+..++..++.++...|++++|.+.+++..+
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 654 222210 0 1111112233346666666666666666666666666666666677777777666666543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=6.6e-17 Score=149.85 Aligned_cols=287 Identities=17% Similarity=0.152 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH-------
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV------- 76 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------- 76 (430)
.+|+.+.+.+-..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+.++. .|+.....
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 5788899999999999999999998763 36789999999999999999999999888764 45443322
Q ss_pred ----------------------------HHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 77 ----------------------------SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 77 ----------------------------~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
.|...+...|+...|++-|++.++..+. -...|..|.+.|...+.++.|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHH
Confidence 2222334446666666666666654321 34566667777777777777777
Q ss_pred HHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC
Q 043370 129 TFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR 204 (430)
Q Consensus 129 ~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 204 (430)
.|.... ....+.+..|...|...|+.+-|++.|++.++. .|+ ...|+.|..++-..|++.+|.+.+.+...
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--- 348 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--- 348 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH---
Confidence 665432 234444555555555566666666666665553 343 34566666666666666666666665543
Q ss_pred Ccc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 205 RKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 205 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
+.| .....+.|...|...|.+++|..+|... .+.|. ....+.|...|.++|++++|+..+++.+++.|.-..+|+.+
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 122 2344455555555555555555555544 33443 23445555555555555555555555555555545555555
Q ss_pred HHHHHhccchhHHHHHHHHH
Q 043370 282 SNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 282 ~~~~~~~g~~~~a~~~~~~m 301 (430)
.+.|-..|+.+.|.+.+.+.
T Consensus 429 Gnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred chHHHHhhhHHHHHHHHHHH
Confidence 55555555555555554443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=3.7e-15 Score=149.93 Aligned_cols=292 Identities=9% Similarity=0.003 Sum_probs=234.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
+......|.+.|+++.|+..|++.. .|+...|..+..+|.+.|++++|++.+++.++.. +.+...+..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4467788999999999999999864 5678889999999999999999999999999864 445678888999999999
Q ss_pred ChHHHHHHHHHHHHcCCC-----------------------------CcHhHHHHH------------------------
Q 043370 87 TLGQGQQIHAEVVKAGAS-----------------------------LDVGVISSL------------------------ 113 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~-----------------------------~~~~~~~~l------------------------ 113 (430)
++++|..-+..+...+.. ++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 999998765443321100 000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHhccCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH
Q 043370 114 ------ISMY------SRCGCLDDSVKTFLECEY------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DV 174 (430)
Q Consensus 114 ------i~~~------~~~g~~~~A~~~~~~~~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 174 (430)
+..+ ...+++++|.+.|+.... .+...|+.+...+...|++++|+..|++..+. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 0100 123578899999987652 24567888889999999999999999999885 454 56
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACK 252 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 252 (430)
.|..+...+...|++++|...|+.+.+. .+.+...|..+...|...|++++|...|++. ...| +...|..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 7888888999999999999999999764 2335788999999999999999999999987 5556 4677778888899
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+.|++++|+..+++.++..|.++..+..+..++...|++++|.+.+++..+..
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999876543
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=2.2e-16 Score=146.37 Aligned_cols=279 Identities=14% Similarity=0.121 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCCCC---HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPIRN---VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD-KITFVSVISSC 82 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 82 (430)
++|+.|...+-..|++..|+.-|++..+-| ...|-.|...|-..+.+++|+..+.+.... +|+ ...+..+...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIY 296 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEE
Confidence 457777777778888888888887765432 457777888888888888888888877764 444 56677777777
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~ 159 (430)
...|+++.|+..|++.++..+. -...|+.|.+++-..|++.+|.+.|+... .....+.+.|...|...|..++|..
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 8888888888888888775322 46778888888888888888888888754 3456777888888888888888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 160 LFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 160 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
+|....+ +.|. ...++.|...|-+.|++++|...+++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+. .
T Consensus 376 ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 376 LYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 8888776 3454 4567888888888888888888888876 56775 467888888888888888888888776 6
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH
Q 043370 237 VKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 237 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
++|. ....+.|.+.|...|++.+|+..++..++++|+-+.+|..++.+.--..+|.+
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 6675 45677788888888888888888888888888888888888777765555555
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=2.4e-14 Score=153.52 Aligned_cols=285 Identities=13% Similarity=0.063 Sum_probs=155.5
Q ss_pred HHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHHHH------------H
Q 043370 13 AHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP-DKITF------------V 76 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~------------~ 76 (430)
...+...|++++|+..|++... .+...+..|...|.+.|++++|+..|++..+..... +...+ .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4445556666666666655431 245556666666666666666666666655532111 11111 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHH------------
Q 043370 77 SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLW------------ 141 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~------------ 141 (430)
.....+.+.|++++|...++++++... .+...+..+...|...|++++|++.|++... .+...+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 112344555666666666666655432 2444555556666666666666666655431 112222
Q ss_pred ------------------------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH
Q 043370 142 ------------------------------SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 142 ------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 191 (430)
..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 122333445677777777777776642 2234556666677777777777
Q ss_pred HHHHHHHHhhhcCCccCHhHHH--------------------------------------------HHHHHHhhcCCHHH
Q 043370 192 GMEFFDLMVKKYRRKPRLEHYT--------------------------------------------CVVDLLGRCGYLDE 227 (430)
Q Consensus 192 a~~~~~~~~~~~~~~p~~~~~~--------------------------------------------~li~~~~~~g~~~~ 227 (430)
|...++++.+... .+...+. .+.+.+...|+.++
T Consensus 514 A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 7777777654311 1221111 12233444455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 228 AAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 228 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|.++++.-+ ++...+..+...+...|+.++|+..++++++.+|.++.++..++.+|...|++++|.+.++...+
T Consensus 592 A~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 555554322 23334455555566677777777777777777776666777777777777777777776665543
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.71 E-value=3.9e-14 Score=151.82 Aligned_cols=285 Identities=8% Similarity=0.009 Sum_probs=200.5
Q ss_pred HHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--------
Q 043370 13 AHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS-------- 81 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-------- 81 (430)
...+.+.|++++|...|++... .+...+..+...+...|++++|++.|++..+.. +.+...+..+...
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 4567789999999999987752 366788888999999999999999999998753 2334444433333
Q ss_pred ----------------------------------HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 82 ----------------------------------CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 82 ----------------------------------~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
+...|++++|.+.+++.++..+. +..++..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 23456666666666666655322 4555566666666666666666
Q ss_pred HHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHhhhcCcHHHHHHH
Q 043370 128 KTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDV---------TFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 128 ~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~ 195 (430)
..|+++. ..+...+..+...+...++.++|+..++++......++.. .+..+...+...|+.++|.++
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 6666542 2244444444444555666666666666543322111111 122344556677777777777
Q ss_pred HHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
++. .+++...+..+...|.+.|++++|.+.|++. ...| +...+..+...+...|+.++|...++.+.+..|+
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 662 2345567788899999999999999999987 4455 5778888999999999999999999999999998
Q ss_pred CChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 274 DAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
++..+..+..++...|++++|.++++.+....
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888899999999999999999999987654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=1.5e-13 Score=141.09 Aligned_cols=296 Identities=8% Similarity=-0.045 Sum_probs=220.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
...+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l 126 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHH
Confidence 3468889999999999999999999843 3467788889999999999999999999998863 44555 88888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---------------------------
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--------------------------- 135 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------- 135 (430)
...|+.++|...++++.+..+. +..++..+...+.+.|..++|.+.++....
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 9999999999999999987544 666767778888777777766655553221
Q ss_pred ------------------------CCHh-HH----HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhh
Q 043370 136 ------------------------SDVV-LW----SSMIAAYGFHGKGEEAINLFEQMEQKEFE-ANDVTFVSLLYACSH 185 (430)
Q Consensus 136 ------------------------~d~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~ 185 (430)
|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. .-..+..++..
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~ 284 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLK 284 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh
Confidence 1100 00 01123345678899999999999887532 332 22235678889
Q ss_pred cCcHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------C---HHHHHH
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-------------N---AIIWKT 246 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~---~~~~~~ 246 (430)
.|++++|..+|+++.+.....+ .......+..++...|++++|..+++.+ ...| + ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 9999999999999875311111 1345666777888999999999998887 2222 2 123455
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+...+...|+.++|+.+++++....|.++..+..++.++...|++++|++.+++..+..
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 66678888999999999999999999899999999999999999999999999876643
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.67 E-value=4.1e-13 Score=137.87 Aligned_cols=298 Identities=9% Similarity=0.001 Sum_probs=221.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPI--R-NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+...+..+...+.+.|++++|...+++... | +.. |..+...+...|++++|+..++++.+.. +.+...+..+..+
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~ 159 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA 159 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456677888999999999999999998752 3 556 8889999999999999999999999863 3344445555555
Q ss_pred HhccCChHH----------------------------------------------HHHHHHHHHHc-CCCCcHh-H----
Q 043370 82 CSELATLGQ----------------------------------------------GQQIHAEVVKA-GASLDVG-V---- 109 (430)
Q Consensus 82 ~~~~g~~~~----------------------------------------------a~~~~~~~~~~-g~~~~~~-~---- 109 (430)
+...+..+. |...++.+.+. ...|+.. .
T Consensus 160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 555455443 33344444432 1122211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---H-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYSD---V-VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA---NDVTFVSLLYA 182 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~d---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a 182 (430)
....+..+...|++++|+..|+.+...+ + ..-..+...|...|++++|+..|+++.+..... .......+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1111234457799999999999987432 1 112225678999999999999999987653111 12445667778
Q ss_pred hhhcCcHHHHHHHHHHHhhhcC----------CccC---HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYR----------RKPR---LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTL 247 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 247 (430)
+...|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~l 399 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDY 399 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8999999999999999976410 1122 234567788899999999999999997 3345 57788889
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
...+...|+++.|+..++++++++|++...+..++..+...|++++|+.+++.+.+.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998764
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=4.1e-16 Score=141.39 Aligned_cols=256 Identities=17% Similarity=0.153 Sum_probs=112.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKIT-FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 120 (430)
.+...+.+.|++++|++++++......+|+... |..+...+...++.+.|.+.++++.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456778899999999999976554432344444 444555666788999999999999887644 66777778877 789
Q ss_pred CCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 121 GCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 121 g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
+++++|.+++...- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887753 3567778888999999999999999999987543 34566778888888999999999999999
Q ss_pred HHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 198 LMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 198 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
+..+. .| +......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...+++....+|.|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99864 55 5778889999999999999988887776 112456778899999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
+.....+..++...|+.++|.+++++.-
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987653
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=6.7e-13 Score=125.98 Aligned_cols=274 Identities=11% Similarity=0.089 Sum_probs=211.1
Q ss_pred cCChHHHHHHHccCCCC--CHH-HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 043370 19 SGSLVEGEKVIRLMPIR--NVI-AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV--SVISSCSELATLGQGQQ 93 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 93 (430)
.|+++.|.+.+...++. ++. .|-....+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 59999999999876643 233 3333344458999999999999999875 56654333 34567788999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CH--------hHHHHHHHHHHhcCChHHHHHHHH
Q 043370 94 IHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS---DV--------VLWSSMIAAYGFHGKGEEAINLFE 162 (430)
Q Consensus 94 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~--------~~~~~li~~~~~~g~~~~A~~~~~ 162 (430)
.++.+.+..+. +..+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999988644 7889999999999999999999999887642 11 234444444445556677777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 043370 163 QMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-N 240 (430)
Q Consensus 163 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 240 (430)
.+.+. .+.+......+..++...|+.++|..++++..+. +|+... .++.+....++.+++.+..++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76443 3557778888999999999999999999998753 445432 2233344569999999999887 4556 4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
...+.++...|...+++++|...|+.+.+..| +...|..|..++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55677888889999999999999999999999 67788899999999999999999998653
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.62 E-value=1.4e-12 Score=134.75 Aligned_cols=260 Identities=9% Similarity=0.015 Sum_probs=202.1
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56677777777766 7888899988887765 466655555566667889999999999887654 344455667788
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHhHHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYSDVVLWS---SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~d~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
.+.+.|+.++|...|+.....++..++ .+.....+.|++++|+..|++..+. .|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 888999999999999876543332222 3333344559999999999998875 56778888888899999999999
Q ss_pred HHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 193 MEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
...+++.... .| +...++.+...+...|++++|...+++. ...| +...+..+..++...|++++|+..+++..+
T Consensus 629 ~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998753 44 5677888888899999999999999887 4555 567788888889999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 270 VNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 270 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
++|++..+............+++.+.+.++.--...
T Consensus 706 l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999888888888888888888888888777654433
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.61 E-value=4.4e-12 Score=131.08 Aligned_cols=288 Identities=11% Similarity=0.040 Sum_probs=220.3
Q ss_pred HHHHHHHHcCChHHHHHHHccCCC-C-----CHHHHHHHHHHHHHCCC---hhHHHHH----------------------
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPI-R-----NVIAWITLIAGKAQNGL---AEDVLDQ---------------------- 59 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~---------------------- 59 (430)
.+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+. ..+++.+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 344455678999999999987653 1 33455567777777766 3334333
Q ss_pred HHHHHHC-CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 043370 60 YNLMRMV-GF-RP--DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY 135 (430)
Q Consensus 60 ~~~m~~~-g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 135 (430)
+...... +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++..
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1111111 11 33 56677777777666 88889999888877653 4544444556666799999999999997653
Q ss_pred --CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH
Q 043370 136 --SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213 (430)
Q Consensus 136 --~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 213 (430)
++...+..+...+.+.|+.++|...|++..+.+ +++...+..+.......|++++|...+++..+ ..|+...+.
T Consensus 538 ~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~ 613 (987)
T PRK09782 538 HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYV 613 (987)
T ss_pred cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHH
Confidence 455567778888999999999999999998864 33333344444555677999999999999985 467888999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 214 CVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
.+..++.+.|++++|...+++. ...| +...+..+...+...|+.++|+..+++.++.+|.++..+..+..++...|++
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999988 5566 4667777777899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 043370 292 QGVSEFREAMRERN 305 (430)
Q Consensus 292 ~~a~~~~~~m~~~g 305 (430)
++|...+++..+..
T Consensus 694 ~eA~~~l~~Al~l~ 707 (987)
T PRK09782 694 AATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987543
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=1.9e-11 Score=116.68 Aligned_cols=277 Identities=12% Similarity=0.017 Sum_probs=184.4
Q ss_pred HcCChHHHHHHHccCCC--CC-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHH
Q 043370 18 KSGSLVEGEKVIRLMPI--RN-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK--ITFVSVISSCSELATLGQGQ 92 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~ 92 (430)
..|+++.|.+.+.+..+ |+ ...+-....++.+.|++++|.+.+.+..+. .|+. ....+....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46888888888876653 33 333444456677788888888888888764 3443 23344566777788888888
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHH----HHHHHHHhcCChHHHHHHHHHHH
Q 043370 93 QIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS---DVVLWS----SMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 93 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
..++.+.+..+. +..+...+...|.+.|++++|.+.+....+. +...+. ....++...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888887633 6778888888888889998888888876632 332221 11112233333334444555554
Q ss_pred HCC---CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH-HHHHHHH--hhcCCHHHHHHHHHhC-CCC
Q 043370 166 QKE---FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY-TCVVDLL--GRCGYLDEAAALIRNM-PVK 238 (430)
Q Consensus 166 ~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~m-~~~ 238 (430)
... .+.+...+..+...+...|+.++|.+.+++..+. .|+.... ..++..+ ...++.+.+.+.++.. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 432 1136677777888888889999999888888764 3433210 0122222 3346777777777766 333
Q ss_pred CC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 239 AN-A--IIWKTLLSACKTHKSTDMAGRIAE--EILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 239 p~-~--~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
|+ + ....++...|.+.|++++|.+.|+ ...+..| ++..+..+...+.+.|+.++|.+++++-
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 2 455677777888899999999888 4566777 5566778888889999998888888864
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.9e-12 Score=121.97 Aligned_cols=274 Identities=12% Similarity=-0.012 Sum_probs=212.7
Q ss_pred ChHHHHHHHccCCC--CCHH-HHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043370 21 SLVEGEKVIRLMPI--RNVI-AWITLIAGKAQNGLAEDVLDQYNLMRMVG--FRPDKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 21 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
+..+|...|...+. +|+- ....+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 56788999988763 3443 34456788999999999999999998752 11256788888765432 2222333
Q ss_pred H-HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 96 A-EVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS---DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 96 ~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
. .+.+. -+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2 23333 2346889999999999999999999999987643 5678888888888889999999999988753 33
Q ss_pred C-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043370 172 N-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTL 247 (430)
Q Consensus 172 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 247 (430)
. --.|..+...|.+.++++.|.-.|+++. .+.| +.....++...+.+.|+.|+|++++++. ..+| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 3 2456677888999999999999999987 4566 5567777888999999999999999998 4444 44444445
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
...+...++.++|+..++++.++-|++...|..++..|-+.|+.+.|..-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 556778899999999999999999999999999999999999999999888776543
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2.3e-12 Score=121.44 Aligned_cols=244 Identities=14% Similarity=0.126 Sum_probs=196.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHhcCCHHH-HHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGA--SLDVGVISSLISMYSRCGCLDD-SVK 128 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~-A~~ 128 (430)
+..+|+.+|.++... +.-+......+..+|...+++++++.+|+.+.+... .-+..+|.+.+--.-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568999999996554 333446667789999999999999999999877531 1267788777665543222222 222
Q ss_pred HHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc
Q 043370 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP 207 (430)
Q Consensus 129 ~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 207 (430)
+. .+.+..+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+ ..
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22 233457899999999999999999999999999885 45 67899988888888999999999999876 34
Q ss_pred CHhHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 208 RLEHYTC---VVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 208 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
+..+|++ |.-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|+++++++..++|.|+..-.--+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5666665 566789999999999999998 7788 5666777777799999999999999999999999999999999
Q ss_pred HHHHhccchhHHHHHHHHHHhC
Q 043370 283 NIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..+...+++++|.+.++++++-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999763
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=4.7e-14 Score=127.91 Aligned_cols=251 Identities=13% Similarity=0.181 Sum_probs=110.0
Q ss_pred HHHHHHHHcCChHHHHHHHcc-CC----CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043370 11 SLAHMYMKSGSLVEGEKVIRL-MP----IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL 85 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~-m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 85 (430)
.+..++.+.|++++|.++++. .. ..|..-|..+.......+++++|++.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 568889999999999999954 32 2366677777778888999999999999999875 2255566677766 688
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE-----YSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+++++|.++.....+.. ++...+..++..|.+.|+++++.++++... +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988776543 466777889999999999999999998853 35778899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043370 161 FEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVK 238 (430)
Q Consensus 161 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 238 (430)
|++..+. .| |......++..+...|+.+++.+++....+. .+.+...+..+..+|...|+.++|...|++. ...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999986 45 4677888999999999999999999998765 2556778889999999999999999999998 434
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 239 A-NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 239 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
| |+.....+..++...|+.++|..+.+++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 677777888889999999999999888753
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.4e-11 Score=117.00 Aligned_cols=252 Identities=10% Similarity=0.063 Sum_probs=193.9
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
..|++++|.+.+....+..-.| ...|.....+..+.|+++.+.+.+.++.+....+...........+...|+++.|..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3699999998888765542111 233444455557899999999999999875433222333345789999999999999
Q ss_pred HHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhhcCcHHHHHHHHHH
Q 043370 129 TFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-------VTFVSLLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 129 ~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~ 198 (430)
.++.+. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999875 347788889999999999999999999999988754332 2334444444455566777777777
Q ss_pred HhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 199 MVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 199 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
+.+. .+.++.....+...+.+.|+.++|.+.+++. ...||.... ++.+....++.+.+.+.++...+..|+|+..
T Consensus 255 lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l 330 (398)
T PRK10747 255 QSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLL 330 (398)
T ss_pred CCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHH
Confidence 7553 3457888899999999999999999999887 544555322 3334456699999999999999999999999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+..+...+...|+|++|.+.|+...+..
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987653
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=1.2e-11 Score=118.01 Aligned_cols=268 Identities=9% Similarity=-0.006 Sum_probs=195.1
Q ss_pred HHHHHHHHH--HHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 39 AWITLIAGK--AQNGLAEDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 39 ~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
.+..+..+. ...|+++.|.+.+.+..+. .|+. ..+.....+..+.|+.+.+.+.+.+..+....+...+.-....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 344455553 4689999999999888765 4554 4445556777888999999999999887643433445555688
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHh---hhcCc
Q 043370 116 MYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV-SLLYAC---SHCGL 188 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~---~~~g~ 188 (430)
.+...|+++.|...++.+. +.+...+..+...|.+.|++++|.+++..+.+.++. +...+. .-..++ ...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999876 347778889999999999999999999999998754 333332 111221 22333
Q ss_pred HHHHHHHHHHHhhhc--CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCChhHHHH
Q 043370 189 KEKGMEFFDLMVKKY--RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAII---WKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~---~~~ll~~~~~~~~~~~a~~ 262 (430)
.+++.+.+..+.+.. ..+.+...+..++..+...|+.++|.+++++. ...||... ...........++.+.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 333444555554431 11237888999999999999999999999988 44565442 1122222344578899999
Q ss_pred HHHHHhcCCCCCC--hhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCC
Q 043370 263 IAEEILGVNPQDA--APYVLLSNIHASAKRWQGVSEFREAMRERNVKKE 309 (430)
Q Consensus 263 ~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 309 (430)
.+++..+..|+|+ ....++...+.+.|+|++|.+.|+........|+
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 9999999999999 8888999999999999999999995433333343
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1.3e-12 Score=126.30 Aligned_cols=270 Identities=15% Similarity=0.189 Sum_probs=200.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 043370 58 DQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD 137 (430)
Q Consensus 58 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d 137 (430)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667888999999999999999999999999998 9999988888889999999999999999988775 778
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
..+|++|..+|.++||... |+...+ -...+...++..|....-..++..+.-..+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8999999999999999765 333332 23344455666666666666666553333444444 34566
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHH
Q 043370 218 LLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKS-TDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
...-.|.++.+.++...+|...-......++.-+..... +++-....+...+ .| ++.+|..++..-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 677788999999999888644211122223555555443 3333344444444 55 89999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccccchh
Q 043370 297 FREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDSE 367 (430)
Q Consensus 297 ~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~ 367 (430)
++.+|+++|++..+.+.|..+-+ . +....++.+++-|++.|+.|+..+...-+.++
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 99999999999999999987633 1 12345668889999999999998765544333
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.50 E-value=1.5e-10 Score=117.44 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=128.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC----CccCHhHHHHHHHHHhh
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR----RKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~ 221 (430)
-++...|++.++++.|+.|...|.+....+-..+.++|...+.+++|..++..+....+ ..++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 45677888999999999999888665566788899999999999999999999876422 23344556788999999
Q ss_pred cCCHHHHHHHHHhCCC--------------CC--CH-HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 222 CGYLDEAAALIRNMPV--------------KA--NA-IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 222 ~g~~~~A~~~~~~m~~--------------~p--~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
.+++++|..+++++.- .| |= .....++..+.-.|+..+|++.++++....|.|......+..+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999998821 12 21 2234455668889999999999999999999999999999999
Q ss_pred HHhccchhHHHHHHHHHHhC
Q 043370 285 HASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~ 304 (430)
+...|.+.+|++.++.....
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999766543
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=2e-11 Score=109.96 Aligned_cols=272 Identities=13% Similarity=0.141 Sum_probs=209.8
Q ss_pred HHHHcCChHHHHHHHccCCCCCHHH-----HHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 15 MYMKSGSLVEGEKVIRLMPIRNVIA-----WITLIAGKAQNG-LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 15 ~~~~~g~~~~A~~~f~~m~~~~~~~-----~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
-|.+.|+++.|.+++.-..++|..+ -|.-+--|.+-| ++..|.+.-+..+... +-|......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4778999999998888776554322 232233344444 5777777776665432 33344433333444567999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
++|.+.|++.+...-......|| +.-.+-+.|++++|++.|-.+. ..++...-.+.+.|-...+...|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999998764433333333 4556788999999999997754 4677777788889999999999999998776
Q ss_pred HCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 043370 166 QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIW 244 (430)
Q Consensus 166 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 244 (430)
.. ++.|+..+..|...|-+.|+-.+|.+++-.--+ -++.+.++...|..-|....-+++|...|++. -++|+..-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 54 566788899999999999999999988765432 24558889999999999999999999999998 678999999
Q ss_pred HHHHHHH-HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 245 KTLLSAC-KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 245 ~~ll~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
..|+..| ++.|++..|..+++...+..|.+......|++.+...|..
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999885 6689999999999999999999999999999999887743
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.7e-11 Score=108.47 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=92.2
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 043370 27 KVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD 106 (430)
Q Consensus 27 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 106 (430)
-+|+..| +...+|..||.+.++-...+.|.+++++-.....+.+..+||.+|.+-. +..++++..+|......||
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCc
Confidence 4444444 3567889999999999999999999999888777889999999988754 3445888999999999999
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHh----ccC----CCCHhHHHHHHHHHHhcCCh
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFL----ECE----YSDVVLWSSMIAAYGFHGKG 154 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~----~~~----~~d~~~~~~li~~~~~~g~~ 154 (430)
..|+|+++.+.++.|+++.|.+.+- +|+ +|...+|..+|..+++.++.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 9999999999999998887755432 222 34455555555555555444
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=2.5e-11 Score=106.52 Aligned_cols=197 Identities=13% Similarity=0.047 Sum_probs=157.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
....+..+...|...|++++|...|++.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677778888888888888888888654 3356778888888888999999999999888763 3455677777888
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 260 (430)
+...|++++|.+.++...+..........+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988764222234456777888889999999999999887 3344 456777888889999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...+++.....|.++..+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888777888888889999999999999998887754
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=1.2e-10 Score=113.35 Aligned_cols=288 Identities=19% Similarity=0.216 Sum_probs=201.7
Q ss_pred HHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
..+...-.|++++|.+++.++.+ ++...|.+|...|-+.|+.++++..+-..-..+ +-|...|..+.....+.|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33444445999999999988753 467889999999999999999988775554432 45677888888888899999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH------------------------------
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDV------------------------------ 138 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~------------------------------ 138 (430)
++|.-.|.++++.. +++....---..+|-+.|+...|...|.++-+.++
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998875 44677777778888889998888888776542111
Q ss_pred --------------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HH
Q 043370 139 --------------VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF--------------------------VS 178 (430)
Q Consensus 139 --------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ 178 (430)
..++.++..|.+...++.|......+......+|..-+ ..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 12233333344444444444444444331111111100 01
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSACKT 253 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~ 253 (430)
+.-++.+....+....+....... ...| +...|.-+.++|...|++.+|+.+|..+ +..-+...|-.+..+|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 111112222222222222222222 3223 4567888999999999999999999998 222367899999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
.|..+.|.+.++.++.+.|.+..+-..|...+-..|+.++|.+++..|.
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999886
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.46 E-value=2.6e-10 Score=115.77 Aligned_cols=287 Identities=10% Similarity=0.045 Sum_probs=203.4
Q ss_pred HHHHHcCChHHHHHHHccCCC--CCH-HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 043370 14 HMYMKSGSLVEGEKVIRLMPI--RNV-IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQ 90 (430)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 90 (430)
-...+.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.... -+........+...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 345689999999999998864 332 12338888889999999999999998721 12334444445667888899999
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043370 91 GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS--DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 91 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 168 (430)
|.++++++++..+. +..++..++..|.+.++.++|++.++.+.+. +...+-.++..+...++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99999999988654 6788888899999999999999999998754 43444333333333566667999999998863
Q ss_pred CCCCHHHHHHHHHHhhhcCcHHHHH------------------------------------------------HHHHHHh
Q 043370 169 FEANDVTFVSLLYACSHCGLKEKGM------------------------------------------------EFFDLMV 200 (430)
Q Consensus 169 ~~p~~~t~~~ll~a~~~~g~~~~a~------------------------------------------------~~~~~~~ 200 (430)
+-+...+..+..+..+.|....|. .-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 334555555556665555433333 3333333
Q ss_pred hhcCCccCH-hHH----HHHHHHHhhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 201 KKYRRKPRL-EHY----TCVVDLLGRCGYLDEAAALIRNMPVKA---NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 201 ~~~~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
...+..|.. ..| .-.+-++...|++.++.+.++.++..+ ...+-.++.++|...+++++|..+++.+..-.|
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 222222321 111 223446678899999999999995322 345667888999999999999999999975442
Q ss_pred ------CCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 273 ------QDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 273 ------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.+......|..+|...+++++|..+++.+.+
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 2333357899999999999999999999986
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.7e-10 Score=103.21 Aligned_cols=296 Identities=11% Similarity=0.069 Sum_probs=209.5
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHH--------------------------------HHHHHHHCC
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWIT--------------------------------LIAGKAQNG 51 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--------------------------------li~~~~~~g 51 (430)
-|++..-...-.+-+.|..+.|.+.|......-+..|.+ +..++-...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 344444445555667788888888876653211111111 123334444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CcHhHHHHHHHHHHhcCCHH-HHHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS--LDVGVISSLISMYSRCGCLD-DSVK 128 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~-~A~~ 128 (430)
+.++++.-.......|++-+...-+....+.-...++++|+.+|+++.+..+- .|..+|..++-.--.+..+. -|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 55666666666666665544444444444445667788888888887776321 14556655443322222221 1222
Q ss_pred HHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC
Q 043370 129 TFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR 208 (430)
Q Consensus 129 ~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 208 (430)
+++ +.+--+.|...+.+-|+-.++.++|...|+..++.+ +-....|+.+..-|....+...|.+-++..++- .+.|
T Consensus 322 v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~D 397 (559)
T KOG1155|consen 322 VSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRD 397 (559)
T ss_pred HHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cchh
Confidence 221 222234566667777888899999999999998864 334567888889999999999999999999853 3448
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
-..|-.|.++|.-.+...=|+-.|++. ..+| |...|.+|...|.+.++.++|++.|.+....+-.+...+..|..+|-
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 899999999999999999999999998 6777 78999999999999999999999999999887668899999999999
Q ss_pred hccchhHHHHHHHHHHh
Q 043370 287 SAKRWQGVSEFREAMRE 303 (430)
Q Consensus 287 ~~g~~~~a~~~~~~m~~ 303 (430)
+.++.++|.+.+++-.+
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999887654
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=1.7e-10 Score=114.42 Aligned_cols=261 Identities=9% Similarity=0.019 Sum_probs=189.1
Q ss_pred CCHHHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHH
Q 043370 35 RNVIAWITLIAGKAQN-----GLAEDVLDQYNLMRMVGFRPD-KITFVSVISSCS---------ELATLGQGQQIHAEVV 99 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~---------~~g~~~~a~~~~~~~~ 99 (430)
.+...|...+.+-... +.+++|+++|++..+. .|+ ...|..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4667777777774321 3467999999999876 454 455555554433 2345889999999999
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HH
Q 043370 100 KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-VT 175 (430)
Q Consensus 100 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 175 (430)
+..+. +..++..+...+...|++++|...|++.. +.+...|..+...+...|++++|+..+++..+. .|+. ..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 87644 78889999999999999999999999854 346778899999999999999999999999886 4443 23
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHH
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAI-IWKTLLSACK 252 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~ 252 (430)
+..++..+...|++++|...++++.+. ..| +...+..+..+|...|++++|...++++ +..|+.. .++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566789999999999998754 234 4556778888999999999999999987 4455544 4455555567
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..| +.|...++.+.+..-..+..+..+...|.-.|+-+.+... +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4788888887643221222222366667777777777766 7776654
No 41
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=4.4e-13 Score=86.50 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE 84 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 84 (430)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 42
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.9e-10 Score=103.24 Aligned_cols=298 Identities=12% Similarity=0.075 Sum_probs=212.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCCC----CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPI----RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
+.+..+++.+|.+.||--..+.|.+++++-.. -+..++|.+|.+-.- ....++..+|....++||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 34667999999999999999999999987653 377889999876442 2337899999999999999999999
Q ss_pred HHHHhccCChHH----HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHhccC------------CCCHhHH
Q 043370 79 ISSCSELATLGQ----GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD-SVKTFLECE------------YSDVVLW 141 (430)
Q Consensus 79 l~~~~~~g~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~------------~~d~~~~ 141 (430)
+++.++.|+++. |.+++.+|++.|++|...+|.-+|..+.+-++..+ |..++.++. ..|...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998766 45788899999999999999999999999888755 333443332 2255666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKE----FEAND---VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTC 214 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 214 (430)
-.-+..|.+..+.+-|.++-.-+.... +.|+. .-|..+..+.++....+.-...|+.|.-. -.-|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHH
Confidence 777777778888888887765543211 34442 34667777888888999999999999876 56678888888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcC-Ch-------------hHHHHHH-------HHHhcC
Q 043370 215 VVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSACKTHK-ST-------------DMAGRIA-------EEILGV 270 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~-~~-------------~~a~~~~-------~~~~~~ 270 (430)
++++..-.|.++-.-+++..+ +-.-+...-.-++..+++.. +. +-|..++ .++...
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 888888888888777777666 21111122222222222222 11 0111111 112222
Q ss_pred CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 271 NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 271 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
+ -.+...+..+-.+.+.|+.++|.+++..+.+.+-
T Consensus 519 ~-~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 519 D-WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred c-CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 2 2456677788888999999999999999965543
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=6.6e-13 Score=85.69 Aligned_cols=50 Identities=30% Similarity=0.538 Sum_probs=47.2
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 136 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.2e-09 Score=97.42 Aligned_cols=275 Identities=13% Similarity=0.119 Sum_probs=174.2
Q ss_pred cCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
.|++..|+++..+-.+ ..+..|-.-+.+--+.|+.+.+-.++.+..+..-.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4667777776655332 2344444455556666777777777776665422344444555555666667777777766
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-----------DVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
.++.+.+.. ++.+......+|.+.|++.....+...+.+. ...+|+.++.=....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 666666533 5666666777777777777777777666532 1235555555555444444444455554
Q ss_pred HHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHH----hCCCCCC
Q 043370 165 EQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIR----NMPVKAN 240 (430)
Q Consensus 165 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~p~ 240 (430)
... .+-++..-.+++.-+...|+.++|.++..+..+. +..|+.. ..-...+-++.+.-.+..+ ..|..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~-- 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED-- 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC--
Confidence 332 3444455556666667777777777777776665 4444411 1111223344333333332 22443
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+..+.+|...|.+++.+.+|...|+..+...| +..+|..+..++.+.|+..+|.+++++-..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47788898899999999999999999999988 889999999999999999999999887653
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=6.4e-10 Score=96.47 Aligned_cols=253 Identities=9% Similarity=0.071 Sum_probs=193.8
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-c--HhHHHHHHHHHHhcCCH
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASL-D--VGVISSLISMYSRCGCL 123 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~ 123 (430)
|.-+.+.++|+++|-+|.+.. +-+..+-.+|.+.+-+.|..+.|+++|+.+.++.--+ + ..+...|..-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 345678999999999999853 3345566788899999999999999999988752111 1 23455688889999999
Q ss_pred HHHHHHHhccCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhhcCcHHHHHHHH
Q 043370 124 DDSVKTFLECEYSD---VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND----VTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 124 ~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
|.|+.+|..+.+.+ ......|+..|-...+|++|++.-+++.+.|-.+.. ..|.-+...+....+++.|..++
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999987633 355667899999999999999999999887655443 34555666666778999999999
Q ss_pred HHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+..+. .+..+..--.+.+.+...|+++.|.+.++.. .-+|+ ..+...|..+|...|+.+++...+.++.+..+
T Consensus 204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~- 280 (389)
T COG2956 204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT- 280 (389)
T ss_pred HHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 998753 2334555567788899999999999999888 33444 45678888999999999999999999998887
Q ss_pred CChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 274 DAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.+..-..|...-....-.+.|.....+-..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 566666666666666666676666554433
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=6.4e-10 Score=96.46 Aligned_cols=299 Identities=12% Similarity=0.102 Sum_probs=224.5
Q ss_pred cCChHHHHHHHccCCCCCHHHH---HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCChH
Q 043370 19 SGSLVEGEKVIRLMPIRNVIAW---ITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK------ITFVSVISSCSELATLG 89 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~ 89 (430)
+++.+.|.++|-.|.+-|..++ -+|...|-+.|..+.|+++-+.+.++ ||. .....|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4678999999999986655554 46778899999999999999998864 432 23445667788899999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH--------hHHHHHHHHHHhcCChHHHHHHH
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDV--------VLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~--------~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
.|+.+|..+.+.|.- -.....-|+..|-+..++++|+++-+++.+.+. ..|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999876532 456777899999999999999999887654332 33455556666678999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043370 162 EQMEQKEFEAND-VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA 239 (430)
Q Consensus 162 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 239 (430)
.+..+.+ |+. ..-..+.......|+++.|.+.++.+.++ +..--..+...|..+|...|+.++...++.++ ...+
T Consensus 204 ~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9998864 333 33334557788999999999999999876 44334577889999999999999999998887 4445
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH---hccchhHHHHHHHHHHhCCCCCCCceeEEE
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA---SAKRWQGVSEFREAMRERNVKKEPGVSWLE 316 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 316 (430)
....-..+-..-....-.+.|...+.+-+...| +...+..|+.... ..|++.+....++.|....++..|.+....
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 555555555554555567888888888888888 7777777777654 445678888889999887777777655554
Q ss_pred ECCEEEEEE
Q 043370 317 IKNQVHQFT 325 (430)
Q Consensus 317 i~~~~~~~~ 325 (430)
.+-..|.|.
T Consensus 360 CGF~a~~l~ 368 (389)
T COG2956 360 CGFTAHTLY 368 (389)
T ss_pred cCCcceeee
Confidence 444444443
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=5.5e-10 Score=97.93 Aligned_cols=194 Identities=9% Similarity=0.055 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 35667778888888888888888888887653 34466677777778888888888888888877643 35566667777
Q ss_pred HHHhcCCHHHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH
Q 043370 116 MYSRCGCLDDSVKTFLECEY-----SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE 190 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 190 (430)
.|...|++++|.+.|++... .....+..+...+...|++++|...|++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777776532 123455556666666677777777776666542 223445555566666666666
Q ss_pred HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043370 191 KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRN 234 (430)
Q Consensus 191 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (430)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666543 122344444555555555666666555444
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-09 Score=99.53 Aligned_cols=262 Identities=15% Similarity=0.114 Sum_probs=196.4
Q ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH-----------------------------HHHHHhc
Q 043370 34 IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVS-----------------------------VISSCSE 84 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----------------------------ll~~~~~ 84 (430)
+.|..-+-.....+-+.|....|.+.|...... .+-.-..|.. +..++-.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 445555555555577788888888888777543 1112222211 2233444
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC------CHhHHHHHHHHHHhcCChHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS------DVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------d~~~~~~li~~~~~~g~~~~A~ 158 (430)
..+.+++.+-.......|++.+...-+-...++-...++|.|+.+|+++.+. |..+|+.++ |.++.+.. +
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk--L 315 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK--L 315 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH--H
Confidence 4566677777777777888877777777777777888999999999998753 567777765 33333221 2
Q ss_pred HHHHHH-HH-CCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 159 NLFEQM-EQ-KEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 159 ~~~~~m-~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.++-+- .. ...+ +.|...+.+.|+-.++.+.|..+|+...+ +.| ....|+.|..-|....+...|.+-++..
T Consensus 316 s~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 222211 11 1233 35777888889999999999999999984 455 4578999999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 236 -PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 236 -~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
.+.| |-..|-.|..+|...+...=|+-.|++...+.|+|+..|.+|..+|.+.++.++|.+.++....-|
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 6666 788999999999999999999999999999999999999999999999999999999999876554
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.1e-10 Score=102.92 Aligned_cols=261 Identities=10% Similarity=-0.016 Sum_probs=211.4
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
|++.--....-+-..+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44555555667888999999999999998864 666666766677888888877777777777776 4557888999999
Q ss_pred HHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
-|.-.|+.++|++.|.+... .-...|-....+|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999987553 34578999999999999999999999877654 222333345566678999999999
Q ss_pred HHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCChhHHHH
Q 043370 193 MEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM--P------VKA-NAIIWKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~------~~p-~~~~~~~ll~~~~~~~~~~~a~~ 262 (430)
.++|.+.. ++.| |+...+-+.-..-..+.+.+|...|+.. + ..+ -..+++.|..+|++.+..++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999987 5556 5666777776777789999999998866 1 112 34567888889999999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 263 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
.+++.+.+.|.+..+|.++.-.|...|+++.|...|.+-.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=4e-09 Score=94.24 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=213.0
Q ss_pred HHHHHHHHH--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 41 ITLIAGKAQ--NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 41 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
..+..+..+ .|+|.+|.++..+-.+.+-. ....|.....+.-+.|+.+.+-..+.++.+....++..+.-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 345555443 69999999999998877633 345677788888899999999999999988755678888889999999
Q ss_pred hcCCHHHHHHHHhc---cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhhcCc
Q 043370 119 RCGCLDDSVKTFLE---CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-------VTFVSLLYACSHCGL 188 (430)
Q Consensus 119 ~~g~~~~A~~~~~~---~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~ 188 (430)
..|+++.|..-.++ |...++........+|.+.|++.+...++.+|.+.|.--|+ .++..++.-+...+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999988776 45678899999999999999999999999999999866554 478888888888888
Q ss_pred HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
.+.-...++..... ..-++..-.+++.-+.++|+.++|.+++++. +-.-|... ..+-.+.+-++.+.-++..++-
T Consensus 245 ~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L--~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 245 SEGLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL--CRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred chHHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH--HHHHhhcCCCCchHHHHHHHHH
Confidence 88877788887653 4556677788899999999999999998877 32333331 2223577888889999999999
Q ss_pred hcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 268 LGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 268 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
....|+++..+..|...|.+.+.|.+|...++.-.+.+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999765544
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=8e-10 Score=105.21 Aligned_cols=231 Identities=17% Similarity=0.190 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----CC-CCcH-hHHHHHHHHHHhcCCHHHHHHHHhccCC---------
Q 043370 72 KITFVSVISSCSELATLGQGQQIHAEVVKA-----GA-SLDV-GVISSLISMYSRCGCLDDSVKTFLECEY--------- 135 (430)
Q Consensus 72 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 135 (430)
..+...+...|...|+++.|..++++.++. |. .|.. ...+.+...|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456777999999999999999999988764 21 1222 2344577899999999999999987641
Q ss_pred -C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCc
Q 043370 136 -S-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-----KEF-EAND-VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK 206 (430)
Q Consensus 136 -~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 206 (430)
| -..+++.|..+|.+.|++++|..+++...+ .|. .|.. .-++.+...|...+.+++|..+++...+.+.-.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 246788888899999999999888877643 121 2332 346677788999999999999999877654322
Q ss_pred c------CHhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc-
Q 043370 207 P------RLEHYTCVVDLLGRCGYLDEAAALIRNM---------PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILG- 269 (430)
Q Consensus 207 p------~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~- 269 (430)
| -..+++.|...|...|++++|+++++++ +..+ ....++.|..+|.+.++.+.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2 2367999999999999999999999877 1122 244567788889999999999999988752
Q ss_pred ---CCC---CCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 270 ---VNP---QDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 270 ---~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
.+| +...+|..|+.+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334 445688999999999999999999988775
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=9.9e-10 Score=108.95 Aligned_cols=241 Identities=10% Similarity=0.001 Sum_probs=175.5
Q ss_pred CChHHHHHHHccCCC--C-CHHHHHHHHHHHHH---------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043370 20 GSLVEGEKVIRLMPI--R-NVIAWITLIAGKAQ---------NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT 87 (430)
Q Consensus 20 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 87 (430)
+++++|...|++..+ | +...|..+..+|.. .+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 346789999988753 3 45667666655542 345899999999999874 4467788888888889999
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--S-DVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
+++|...++++++.++. +...+..+...|...|++++|...|++..+ | +...+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999998633 677888999999999999999999998653 3 3334444555677789999999999998
Q ss_pred HHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 043370 165 EQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNM----PVK 238 (430)
Q Consensus 165 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 238 (430)
.+.. +|+ ...+..+..++...|+.++|.+.+.++... .|+ ....+.+...|.+.| ++|...++.+ ...
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7753 354 445666777888999999999999987643 343 445566667777777 4777666655 333
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 239 ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
|....+..+ .+.-+|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 433344333 35567777777666 7776544
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.28 E-value=1.8e-08 Score=95.31 Aligned_cols=295 Identities=14% Similarity=0.139 Sum_probs=244.5
Q ss_pred HHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHh
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLM----RMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~ 83 (430)
-|.-+|++..-++.|.+++.+.. ..+...|.+-...--.+|+.+...++.++- ...|+..+...|..=..+|-
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 34556777778888888887665 347788887777777889998888887654 45688889999999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLD--VGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
..|..-.+..+....+..|++.. -.+|+.-.+.|.+.+.++-|+.+|.... ..+...|...+..=-.+|..++-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999988888887642 4678888889999999999999998755 346778888888778899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV 237 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 237 (430)
.+|++.... ++-....+......+...|++..|+.++..+.+. .+-+...|.+-+........++.|..+|.+. ..
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 999999887 4445566666677788899999999999998764 2336788999999999999999999999998 56
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCce
Q 043370 238 KANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGV 312 (430)
Q Consensus 238 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 312 (430)
.|+...|.--+......++.++|.+++++.++..|.-...|..+...+.+.++.+.|...|.. |.++-|.+
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~----G~k~cP~~ 718 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ----GTKKCPNS 718 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh----ccccCCCC
Confidence 689999988888888899999999999999999998889999999999999999999998864 66665544
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.26 E-value=1.6e-08 Score=98.89 Aligned_cols=253 Identities=14% Similarity=0.092 Sum_probs=192.7
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
..|++++|..++.+..+.. +.+...|.+|...|-+.|+.+++...+-.+-... +.|...|..+.+...+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3499999999999999875 6678899999999999999999988775554443 4477999999999999999999999
Q ss_pred HHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-H----HHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 129 TFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-V----TFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 129 ~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~----t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
+|.+..+ ++....---+..|-+.|+...|.+.|.++.+.. +|.. . +--.++..+-..++.+.|.+.++...
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998654 344444445678889999999999999998863 3332 2 22234555666677788888887776
Q ss_pred hhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C-------------------------------------------
Q 043370 201 KKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P------------------------------------------- 236 (430)
Q Consensus 201 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~------------------------------------------- 236 (430)
...+-..+...++.++.+|.+..+++.|...+..+ .
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 65444455666677777777766666665543322 0
Q ss_pred --------------------CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC-CCChhHHHHHHHHHhccchhH
Q 043370 237 --------------------VKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP-QDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 237 --------------------~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~ 293 (430)
+.| ++..|.-+..++...|++.+|..++..+....+ .+...|..++.+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 011 234456677789999999999999999987776 467899999999999999999
Q ss_pred HHHHHHHHHhC
Q 043370 294 VSEFREAMRER 304 (430)
Q Consensus 294 a~~~~~~m~~~ 304 (430)
|.+.+++....
T Consensus 468 A~e~y~kvl~~ 478 (895)
T KOG2076|consen 468 AIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHhc
Confidence 99999988653
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.6e-09 Score=102.79 Aligned_cols=312 Identities=13% Similarity=0.111 Sum_probs=234.1
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCCC------HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH--HHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRN------VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK--ITF 75 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 75 (430)
.|+.+.+.|.+.|.-.|+++.++.+.+.+...+ ..+|-.+.++|-..|++++|...|.+..+. .||. ..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 467888899999999999999988887765322 346778999999999999999999888765 4444 445
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----CHHHHHHHHhccCC---CCHhHHHHHHHHH
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG----CLDDSVKTFLECEY---SDVVLWSSMIAAY 148 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~---~d~~~~~~li~~~ 148 (430)
..+...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+... .|...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 567888899999999999999998874 457888888888898876 56677777766553 3677787776666
Q ss_pred HhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC--CccCH------hHHHHHH
Q 043370 149 GFHGKGEEAINLFEQM----EQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR--RKPRL------EHYTCVV 216 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li 216 (430)
-.. +...++..|... ...+-.+.....|.+.......|+++.|...|........ ..++. .+--.+.
T Consensus 425 e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 654 444457777654 3455557778899999999999999999999998865311 11222 2233456
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHH
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 294 (430)
.++-..++.+.|.+.+..+ ...|+ ...|-.+.......++..+|...++.+...+..++..+..+.+.|.....|.-|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 6667778999999999988 44565 344555655566678899999999999999988999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCceeEEEECC
Q 043370 295 SEFREAMRERNVKKEPGVSWLEIKN 319 (430)
Q Consensus 295 ~~~~~~m~~~g~~~~~~~~~~~i~~ 319 (430)
.+-|....+.-...+..++.+.+++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhH
Confidence 9977777655444433344454444
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.2e-09 Score=94.78 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=137.3
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 043370 41 ITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120 (430)
Q Consensus 41 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 120 (430)
+.|.++|.+.|-+.+|.+-|+.-++. .|-+.||..|-.+|.+..+.+.|..++.+-++. ++-|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45556666666666666666655554 455555666666666666666666666655554 233444444455555555
Q ss_pred CCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 121 GCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 121 g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
++.++|.++|+...+ .++.+...+..+|.-.++++-|+..|+++++.|+. +...|+.+.-.|.-.+++|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555555432 23444444444555555555555555555555532 44445555555555555555444444
Q ss_pred HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 198 LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 198 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
..... ..+.++ -..+|-.+-......|++..|.+.|+-.+..+|++..+
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 43321 111111 23345555555677888999999999988888888999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
++.|.-.-.+.|++++|..++......
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999998877654
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1e-08 Score=93.73 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=122.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV 216 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 216 (430)
+..+|..-...+.-.+++++|..=|++.+... +-+...|..+..+..+.+.++++...|++..++ ++.-+++|+-..
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fA 469 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFA 469 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHH
Confidence 33444444444455566777777777766642 224556777777777889999999999999875 555678999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKAN---------AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
..+...+++++|.+.|+.. ...|+ +.+-.+++-. .=.+++..|..++++..+++|....+|..|...-.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFEL 548 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 9999999999999999876 33333 2222333322 22389999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHH
Q 043370 287 SAKRWQGVSEFREAMR 302 (430)
Q Consensus 287 ~~g~~~~a~~~~~~m~ 302 (430)
..|+.++|.++|++-.
T Consensus 549 Q~~~i~eAielFEksa 564 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 9999999999998753
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.19 E-value=9.8e-08 Score=90.42 Aligned_cols=271 Identities=10% Similarity=0.037 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
-.+|+.-...|.+.+.++-|..+|...++- ++.+...|..+...=-..|..+.-..++++++..- +-....|-....-
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Confidence 357888888888899999999999988875 35566778777777777889999999999998873 3355666667777
Q ss_pred HHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
+-..|++..|+.++...- ..+...|-+-+..-..+..+++|..+|.+... ..|+...|.--+..-.-.++.++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 888899999999988754 34678899999999999999999999999876 4678877777777777789999999
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
+++++..+.| +.-...|..+.+.+.+.++++.|.+.|..- ..-| ....|-.|...--+.|++-.|..++++..-.+
T Consensus 672 rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 9999998753 333467889999999999999999988765 4456 46788888888888999999999999999999
Q ss_pred CCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEE
Q 043370 272 PQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWL 315 (430)
Q Consensus 272 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (430)
|.+...|...+++-.+.|+.+.|..+..+..+.- |..+.-|.
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 9999999999999999999999998876655432 55555554
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.5e-09 Score=94.30 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=163.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 043370 104 SLDVGVISSLISMYSRCGCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV-SLL 180 (430)
Q Consensus 104 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll 180 (430)
..|-.--+-+..+|.+.|.+.+|.+.|+.-. .+-+.||-.|-..|.+..++..|+.+|.+-.+. -|-.+||. ...
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3344455778999999999999999998754 567889999999999999999999999998775 56667764 455
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCh
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSACKTHKST 257 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~ 257 (430)
..+-..++.++|.++++...+.+ +.+++...++...|.-.++.+-|+.+++++ +.. ++..|+.+.-+|.-.+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 67778899999999999998752 346788888999999999999999999876 655 788888888889999999
Q ss_pred hHHHHHHHHHhcCC--C-CCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 258 DMAGRIAEEILGVN--P-QDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 258 ~~a~~~~~~~~~~~--p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+.++..|++.+..- | .-...|..|.......|++.-|.+.|+.-...+
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999999997543 3 246689999999999999999999998765544
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=8.8e-09 Score=93.79 Aligned_cols=209 Identities=8% Similarity=-0.022 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHcC-CCC--cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAG-ASL--DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555555321 111 23445566666666666666666666543 33556666666666666777777776
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 043370 161 FEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PV 237 (430)
Q Consensus 161 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 237 (430)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.+. ..
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 6666653 333 455556666666666777776666666543 333221111122233455666666666443 11
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-------cCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 238 KANAIIWKTLLSACKTHKSTDMAGRIAEEIL-------GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 238 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.|+. |..- ......|+...+ ..++.+. ++.|....+|..+...+...|++++|...|++..+.
T Consensus 196 ~~~~--~~~~-~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 DKEQ--WGWN-IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred Cccc--cHHH-HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2222 2211 112223444333 2333332 223334456666777777777777777777666543
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=4.2e-08 Score=89.34 Aligned_cols=220 Identities=12% Similarity=-0.002 Sum_probs=158.2
Q ss_pred CCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVG-FRPD--KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS 126 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 126 (430)
.+..+.++.-+.+++... +.|+ ...|..+...+...|+.++|...|++.++..+ .+..+|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 356778888888888643 2232 34577778888899999999999999998754 3789999999999999999999
Q ss_pred HHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc
Q 043370 127 VKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 127 ~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 203 (430)
...|+... +.+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 99999864 346788888999999999999999999999885 454432222222344567899999999776542
Q ss_pred CCccCHhHHHHHHHHHhhcCCHHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 204 RRKPRLEHYTCVVDLLGRCGYLDE--AAALIRNM-PVK----A-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 204 ~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~~----p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
..|+... ..++..+ .|++.+ +.+.+.+. ... | ....|..+...+...|+.++|...|++..+.+|++.
T Consensus 195 -~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3333322 2333333 444433 33333221 111 2 245788899999999999999999999999997554
Q ss_pred hh
Q 043370 276 AP 277 (430)
Q Consensus 276 ~~ 277 (430)
.-
T Consensus 271 ~e 272 (296)
T PRK11189 271 VE 272 (296)
T ss_pred HH
Confidence 33
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=1.8e-08 Score=96.14 Aligned_cols=230 Identities=13% Similarity=0.128 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHc-----CCC--
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMV-----G-FRPDKITF-VSVISSCSELATLGQGQQIHAEVVKA-----GAS-- 104 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~~-- 104 (430)
+...+...|...|+++.|..++...++. | ..|...+. +.+...|...+++++|..+|+.++.. |-.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444888999999999999999988764 2 13444443 34777888999999999999988653 211
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccC----------CCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC
Q 043370 105 LDVGVISSLISMYSRCGCLDDSVKTFLECE----------YSDV-VLWSSMIAAYGFHGKGEEAINLFEQMEQK---EFE 170 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 170 (430)
.-..+++.|..+|.+.|++++|...++... .+++ ...+.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 124567778888999999999988877642 1233 34566777888899999999999876542 122
Q ss_pred CC----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc-----CCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-----
Q 043370 171 AN----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY-----RRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM----- 235 (430)
Q Consensus 171 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 235 (430)
++ ..+++.|...|...|++++|.++|++++... +..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3678999999999999999999999987642 1122 2456788999999999999999998876
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 236 ---PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 236 ---~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+..|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23354 4679999999999999999999999886
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.6e-08 Score=90.31 Aligned_cols=255 Identities=11% Similarity=0.066 Sum_probs=186.9
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVS--VISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
..|.++|+++.|+++++-..+..-+.-...-+. ++.-+..-.++..|.+.-+..+... .-|....+.-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 347889999999999988876542222222222 2222222346777777766665432 2234444444444556799
Q ss_pred HHHHHHHHhccCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 123 LDDSVKTFLECEYSDVVLWSSM---IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 123 ~~~A~~~~~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
+++|...|.+....|...-.+| .-.+-..|+.++|++.|-++... +.-+...+..+.+.|....+..+|.+++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999887776544333 33567789999999999988654 3446777888889999999999999999888
Q ss_pred hhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 200 VKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 200 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
.. -++.|+....-|.+.|-+.|+-..|++..-+- ..-| |..+...|..-|....-.+.++.+|++..-+.| +..-
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~k 661 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSK 661 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHH
Confidence 63 35557889999999999999999999875444 3333 666777777778888899999999999988889 7777
Q ss_pred HHHHHH-HHHhccchhHHHHHHHHHHhC
Q 043370 278 YVLLSN-IHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 278 ~~~l~~-~~~~~g~~~~a~~~~~~m~~~ 304 (430)
|..++. ++.+.|++..|..+++...++
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 776655 557899999999999998754
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.6e-08 Score=90.60 Aligned_cols=276 Identities=10% Similarity=0.022 Sum_probs=214.1
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 2 FELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
++.++.+.-.-.+-+...+++.+..++++..-+ .+...+..-|..+...|+..+-.-+=.+|.+. .+-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345566666677778889999999999987764 34556667788899999999988888888876 35567899999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CC-CHhHHHHHHHHHHhcCC
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YS-DVVLWSSMIAAYGFHGK 153 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-d~~~~~~li~~~~~~g~ 153 (430)
.--|...|...+|++.|.+....... -...|-.+...|+-.|.-|.|...+.... .. -+..| +.--|.+.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNN 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhcc
Confidence 98888899999999999988765422 45689999999999999999988876532 11 22223 3446788899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc-CC---c-cCHhHHHHHHHHHhhcCCHHHH
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY-RR---K-PRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~A 228 (430)
.+.|.+.|.+.... .+-|+...+-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999988765 24466777777766777889999999999876210 01 1 1445788999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 229 AALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 229 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
...++.. ...| |..++.++.-.|...|+++.|...|.+.+.+.|+|..+-..|.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999987 3334 7888888888899999999999999999999996655444443
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=6.3e-08 Score=86.96 Aligned_cols=267 Identities=9% Similarity=0.045 Sum_probs=163.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHH---HHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITL---IAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
|+-...++.+.|...|+.++|...|++...-|+.+-..| .-.+.+.|+.++.-.+...+.... .-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 344455566666666666666666665443322221111 112335555555555555554321 1223333333444
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--C-CCHhHHHHHHHHHHhcCChHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE--Y-SDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
....++++.|..+-++.++.... +...+-.-.......|+.++|.-.|.... . -+..+|.-|+.+|...|+..||.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 44556666666666666654322 45555555666777788888888787643 3 47778888888888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHhhh-cCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 159 NLFEQMEQKEFEANDVTFVSLL-YACSH-CGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
-+-+...+. ++.+..+.+.+. ..|.- ...-++|..++++.. .+.|+- ..-+.+...+.+.|..+++..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 777665544 344555555442 23322 223466777777665 345653 45566777777888888888888776
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 236 -PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 236 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
...||....+.|...+...+.+++|...|...+.++|++..+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 556788888888888888888888888888888888866443
No 66
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.3e-07 Score=93.50 Aligned_cols=293 Identities=12% Similarity=0.077 Sum_probs=163.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--C-C-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPI--R-N-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE 84 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 84 (430)
|-.+..+|-..|+++.|...|-.... + + +..+--|...|.+.|+.+.+...|+...+.. +-+..|...+...|+.
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHh
Confidence 44566666666666666666654332 1 1 2333445555666666666666666665541 3334444444444444
Q ss_pred cC----ChHHHHHHHHHHHHc-------------------------------------CCCCcHhHHHHHHHHHHhcCCH
Q 043370 85 LA----TLGQGQQIHAEVVKA-------------------------------------GASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 85 ~g----~~~~a~~~~~~~~~~-------------------------------------g~~~~~~~~~~li~~~~~~g~~ 123 (430)
.+ ..+.|..+.....+. +-++.+.+.|.+...+...|++
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 32 233333333333332 3334455555566666666666
Q ss_pred HHHHHHHhccCC-------CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcH
Q 043370 124 DDSVKTFLECEY-------SDV------VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLK 189 (430)
Q Consensus 124 ~~A~~~~~~~~~-------~d~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 189 (430)
++|...|+.... +|. .+-..+...+-..++.+.|.+.|....+. .|.-+ .|..++......+..
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~ 546 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNL 546 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCc
Confidence 666666654321 111 11122333444445566666666665553 33322 233333222234556
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh------------
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKANAIIWKTLLSACKT------------ 253 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------------ 253 (430)
.+|...+..... ....++..++.+...+.+...+..|.+-|+.+ ...+|..+.-+|.+-|..
T Consensus 547 ~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 547 YEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred HHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 666666666654 23344455555666666666666666644444 223555555555554432
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
.+..+.|+++|.+++..+|.|..+-+.+.-.++..|++.+|..+|.+.++...
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 34467888888998999998888888888999999999999999999988765
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=6e-07 Score=82.16 Aligned_cols=293 Identities=9% Similarity=0.080 Sum_probs=185.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
|-..+.|=-..|++..|.++|++-. +|+...|++.|.-=.+-...+.|..++++..- +.|+..+|.-....=.+.|
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcC
Confidence 3334444445566666666665432 45666666666655555666666666655543 2455555555555555555
Q ss_pred ChHHHHHHHHHHHHc-CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhc----cC--------------------------
Q 043370 87 TLGQGQQIHAEVVKA-GA-SLDVGVISSLISMYSRCGCLDDSVKTFLE----CE-------------------------- 134 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~-------------------------- 134 (430)
....+.++|..+++. |- .-+...+.+....=.++..++.|.-+|+- ++
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 555555555555432 10 01122333333333344444444433321 11
Q ss_pred --------------C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHh---hhcC
Q 043370 135 --------------Y---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-------VTFVSLLYAC---SHCG 187 (430)
Q Consensus 135 --------------~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g 187 (430)
. -|-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=.+| ....
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 14456766777777789999999999998876 56633 2333333333 2467
Q ss_pred cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043370 188 LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLL----GRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 262 (430)
+++.+.++|+..++ -++-...|+.-+--+| .++-++..|.+++... |.-|-..++...|..-.+.++++....
T Consensus 381 d~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 381 DVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 88888899888875 2333445555544444 4678888898888766 888888888888888888899999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 263 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
++++.++..|.|..+|......-...|+++.|..+|........
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 99999999998888888888888888999999998887765543
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=1.4e-07 Score=91.02 Aligned_cols=253 Identities=11% Similarity=0.028 Sum_probs=143.9
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----C
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKIT-FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC-----G 121 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g 121 (430)
...|++++|++.+.+-... -+|..+ .......+.++|+.++|..++..+++.++. |..-|..|..+..-. .
T Consensus 15 ~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccc
Confidence 4455555555555443322 223222 333444455555555555555555555422 333333333333111 1
Q ss_pred CHHHHHHHHhccCCC--CHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHH
Q 043370 122 CLDDSVKTFLECEYS--DVVLWSSMIAAYGFHGKG-EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 122 ~~~~A~~~~~~~~~~--d~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 198 (430)
+.+...++|+++... ...+...+.-.+.....+ ..+...+..+...|+++ +|+.|-..|......+-..+++..
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHH
Confidence 334444445444311 111111111111111112 24445556666777543 455555556655555555555555
Q ss_pred Hhhhc-------------CCccCHh--HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 043370 199 MVKKY-------------RRKPRLE--HYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 199 ~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~ 261 (430)
..... .-+|+.. ++.-+...|-..|++++|++++++. ...|+ +..|..-...+...|+++.|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 43221 1134442 4455677888899999999999876 55665 556777777788999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 262 RIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
..++....+++.|-..-+-.+..+.+.|++++|.++.....+.+.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999987777777778888899999999999988877765
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.5e-07 Score=86.40 Aligned_cols=286 Identities=14% Similarity=0.055 Sum_probs=192.6
Q ss_pred HHHHHHHcCChHHHHHHHccCC--CCC-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMP--IRN-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELAT 87 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~ 87 (430)
..+-|.+.|++++|++.+.+.. .|| ++-|.....+|...|+++++.+---+.++. .|+- -.+.--.+++-.+|+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhcc
Confidence 4455677888888888887764 455 677888888888888888888877777663 5553 345556677777888
Q ss_pred hHHHHHH------HH------------H-------------HHHcC--CCCcHhHHHHHHHHHH---------hcC----
Q 043370 88 LGQGQQI------HA------------E-------------VVKAG--ASLDVGVISSLISMYS---------RCG---- 121 (430)
Q Consensus 88 ~~~a~~~------~~------------~-------------~~~~g--~~~~~~~~~~li~~~~---------~~g---- 121 (430)
+++|..= ++ + +.+.+ +-|......+....+- +..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 8776521 10 0 00011 1122222122111110 000
Q ss_pred ---------------CHHHHHHHHhccC-------CC---CH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043370 122 ---------------CLDDSVKTFLECE-------YS---DV------VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170 (430)
Q Consensus 122 ---------------~~~~A~~~~~~~~-------~~---d~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 170 (430)
.+..|...+.+-. .. |. .+.+.-..-+.-.|+.-.|..-|+..+.....
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 1111111111100 00 11 11111112234468888999999998887544
Q ss_pred CCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043370 171 ANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTL 247 (430)
Q Consensus 171 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 247 (430)
++. .|.-+..+|....+.++.++.|....+ +.| +..+|..-.+++.-.+++++|..=|++. .+.| +...|-.+
T Consensus 359 ~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 359 FNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 333 277777889999999999999999874 444 6678888888888899999999999987 6677 56677777
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
--+.-+.++++++...|++..+..|..+..|+....++...+++++|.+.++.-.+
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 77777788999999999999999999999999999999999999999999998765
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=4.5e-08 Score=81.43 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHH
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLL 219 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 219 (430)
...+.-+|.+.|+...|.+-+++.++.. +-+.-++..+...|.+.|..+.|.+.|++..+ +.| +..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3445567777888888888888777753 33455677777777788888888888887764 344 456677777777
Q ss_pred hhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 220 GRCGYLDEAAALIRNMPVKA----NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
|..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.+.....|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888887762222 24567777767777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCC
Q 043370 296 EFREAMRERNV 306 (430)
Q Consensus 296 ~~~~~m~~~g~ 306 (430)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 88887776654
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.02 E-value=1.4e-08 Score=98.93 Aligned_cols=249 Identities=14% Similarity=0.087 Sum_probs=146.9
Q ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 34 IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
.||-+||..+|.-|+..|+.+.|- +|.-|.-..++.+...|+.++.+....++.+.+. .|-..+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 456677777777777777777766 6766666666666677777777766666665554 4566677777
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-KEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
...|...||+.. |+...+ -.-.++..+..+|-......++..+.- -+.-||..+. +.-....|.++.+
T Consensus 90 l~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~eglwaql 158 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGLWAQL 158 (1088)
T ss_pred HHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHHHHHH
Confidence 777777777655 322221 222344556666666666666555332 2244555432 2223345556666
Q ss_pred HHHHHHHhhhcCCccCHhHHHHHHHHH-hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 193 MEFFDLMVKKYRRKPRLEHYTCVVDLL-GRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
.+++..+.......|... +++-. .-...+++-..........|+..++.+++..-...|+.+.|..++.+|.+.+
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 665544432111111111 11111 1112233333333333225778888888888888888888888888887655
Q ss_pred -CCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCce
Q 043370 272 -PQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGV 312 (430)
Q Consensus 272 -p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 312 (430)
|-++..|..|+-+ .++..-++.+++.|.+.|+.|...+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 6566666666555 6777777778888888888777654
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3e-08 Score=92.68 Aligned_cols=215 Identities=12% Similarity=0.117 Sum_probs=176.1
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+.+.|++.+|.-.|+..++..+. +...|.-|....+..++-..|+..+.+..+ .+....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35778899999999999888654 889999999999999999999999987653 46677788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 159 NLFEQMEQKEFEANDVTFVSLL-----------YACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
++|++-++.. |. |..+. ........+....++|-.+....+..+|.....+|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999876542 11 00010 12233344556667777777665666788889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 228 AAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 228 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
|.+.|+.. .++| |..+||.|...++...+.++|+..|++++++.|.-..+...|.-.|...|.+++|.+.|-...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999988 7778 678899999999999999999999999999999989999999999999999999998876543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.1e-06 Score=75.59 Aligned_cols=179 Identities=12% Similarity=0.022 Sum_probs=88.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH-HHHh-hcC
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV-DLLG-RCG 223 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g 223 (430)
..+...|+.++|.-.|+..+... +-+...|..|+..|...|.+.+|...-....+. .+.+..+.+.+. ..+. ...
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCch
Confidence 34445555555555555554421 123445555555555555555555444443332 122233332221 1111 111
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 224 YLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 224 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
--++|.+++++. ..+|+ ....+.+...|...|..+++..++++.+...| |....+.|.+.+...+.+.+|.+.|...
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 224455555544 44443 22334444445556666666666666655555 5555666666666666666665555543
Q ss_pred HhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCCC
Q 043370 302 RERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDTG 358 (430)
Q Consensus 302 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~ 358 (430)
. ...|+.+.....++.+.++|+ .||..
T Consensus 498 L--------------------------r~dP~~~~sl~Gl~~lEK~~~----~~DAT 524 (564)
T KOG1174|consen 498 L--------------------------RQDPKSKRTLRGLRLLEKSDD----ESDAT 524 (564)
T ss_pred H--------------------------hcCccchHHHHHHHHHHhccC----CCCcc
Confidence 2 345666666655655555554 55543
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=2.3e-08 Score=90.00 Aligned_cols=244 Identities=12% Similarity=0.065 Sum_probs=120.8
Q ss_pred HcCChHHHHHHHcc--CCC-CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 043370 18 KSGSLVEGEKVIRL--MPI-RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQI 94 (430)
Q Consensus 18 ~~g~~~~A~~~f~~--m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 94 (430)
=.|++..++.-.+. ... .+.....-+.+++...|+++.++ .+..... .|.......+...+....+-+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 35667766644431 111 12334455667777777766543 3333332 55655555555544433344444433
Q ss_pred HHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043370 95 HAEVVKAGAS-LDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173 (430)
Q Consensus 95 ~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 173 (430)
++........ .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. . +.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD 163 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-ED 163 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-Cc
Confidence 3333222222 23333333445566677777777777655 34555556667777777777777777777653 2 23
Q ss_pred HHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043370 174 VTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTL 247 (430)
Q Consensus 174 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 247 (430)
.+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+.-+....|++++|.+++++. ...| +..+...+
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 334444444322 22456666666666543 3345555555555566666666666655553 2222 33344444
Q ss_pred HHHHHhcCCh-hHHHHHHHHHhcCCC
Q 043370 248 LSACKTHKST-DMAGRIAEEILGVNP 272 (430)
Q Consensus 248 l~~~~~~~~~-~~a~~~~~~~~~~~p 272 (430)
+......|+. +.+.+++.++....|
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 4444444544 444555555555555
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=5.6e-08 Score=87.46 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=163.6
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 124 (430)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33455788888886665 322221223445566778888888876543 3443333 566666655555554445666
Q ss_pred HHHHHHhccC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 125 DSVKTFLECE-YS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 125 ~A~~~~~~~~-~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
.+..-+++.. .+ +....-.....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665433 22 2222222234566679999999998652 35566667788999999999999999999
Q ss_pred hhhcCCccCHhHHHHHHH----HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 200 VKKYRRKPRLEHYTCVVD----LLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 200 ~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+ +..|. +...+.. .+.-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|..++++..+.+|.
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 64 34443 3333333 333345799999999999 44578888899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhccch-hHHHHHHHHHHhC
Q 043370 274 DAAPYVLLSNIHASAKRW-QGVSEFREAMRER 304 (430)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 304 (430)
++.+...++-+....|+. +.+.+.+.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 6677888887754
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=1.8e-06 Score=83.59 Aligned_cols=284 Identities=13% Similarity=0.065 Sum_probs=189.1
Q ss_pred HHHHHHcCChHHHHHHHccCCC--CCHH-HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-c----
Q 043370 13 AHMYMKSGSLVEGEKVIRLMPI--RNVI-AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS-E---- 84 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~---- 84 (430)
...+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+++.+ ||...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4567889999999999987553 3544 45566788999999999999999999974 56666555444443 1
Q ss_pred -cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH-HHHHHHhccCCCCH-hHHHHHHHHHHhcCChHHHHHHH
Q 043370 85 -LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD-DSVKTFLECEYSDV-VLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 85 -~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
..+.+...++++.+.+.-+ .......+.-.+..-..+. .+...+..+..+.+ .+++.+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 2256777888888766532 2222222211122111222 23333333444444 45666666666555555555666
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCC
Q 043370 162 EQMEQK----E----------FEAND--VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGY 224 (430)
Q Consensus 162 ~~m~~~----g----------~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 224 (430)
...... + -+|.. .++..+...|...|+.++|.++++..++. .|+ +..|..-...|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCC
Confidence 655432 1 12343 24455566688999999999999998853 565 6889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC--CC-CC----hhH--HHHHHHHHhccchhH
Q 043370 225 LDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN--PQ-DA----APY--VLLSNIHASAKRWQG 293 (430)
Q Consensus 225 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~----~~~--~~l~~~~~~~g~~~~ 293 (430)
+++|.+.++.. ...+ |-.+-+-....+.+.|++++|...+....+.+ |. |. ..| .-.+.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999887 3443 55555566667889999999999999886544 32 11 123 345788999999999
Q ss_pred HHHHHHHHHh
Q 043370 294 VSEFREAMRE 303 (430)
Q Consensus 294 a~~~~~~m~~ 303 (430)
|.+.+..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9887766644
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=5.3e-07 Score=75.16 Aligned_cols=187 Identities=9% Similarity=0.030 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
....|.-+|.+.|++..|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+..++.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 44455666777777777777777777654 334566666677777777777777777777665433 5566666666666
Q ss_pred hcCCHHHHHHHHhccC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 119 RCGCLDDSVKTFLECE-YS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~-~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
..|++++|...|+... .| -..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 6666666666666533 22 23455555555566666666666666665542 222344555555555556666666
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
.+++..... ..++....-..|..-.+.|+-+.|.+
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHH
Confidence 665555443 22444444444444444444444433
No 78
>PF12854 PPR_1: PPR repeat
Probab=98.95 E-value=1e-09 Score=63.69 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.7
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHccCC
Q 043370 1 GFELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP 33 (430)
Q Consensus 1 G~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 33 (430)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788999999999999999999999999998885
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=3.5e-06 Score=79.27 Aligned_cols=300 Identities=10% Similarity=-0.023 Sum_probs=186.4
Q ss_pred Cch-hHHHHHHHHHHHcCChHHHHHHHccCC---CC--CH-HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043370 4 LDL-VAGSSLAHMYMKSGSLVEGEKVIRLMP---IR--NV-IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV 76 (430)
Q Consensus 4 ~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~---~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 76 (430)
||- ..|..+...+...|+.+.|.+.+.... .+ +. .........+...|++++|.+.+++..+.. +.|...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 443 346666677777888888766665532 12 22 122233445678899999999999998763 33444444
Q ss_pred H---HHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHh
Q 043370 77 S---VISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGF 150 (430)
Q Consensus 77 ~---ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~ 150 (430)
. ........+..+.+.+.+... ....+.+......+...+...|++++|...+++.. +.+...+..+...|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 2 111112234555555555441 11122234455667788999999999999999865 3467788889999999
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH-H--HHHHHHhhcCC
Q 043370 151 HGKGEEAINLFEQMEQKEF-EAND--VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY-T--CVVDLLGRCGY 224 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~ 224 (430)
.|++++|...+++...... .|+. ..+..+...+...|+.++|..++++........+..... + .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999877532 2332 235567788899999999999999985431111222111 1 33333444453
Q ss_pred HHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC-C--------CCChhHHHHHHHHHhc
Q 043370 225 LDEAAAL---IRNM----PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN-P--------QDAAPYVLLSNIHASA 288 (430)
Q Consensus 225 ~~~A~~~---~~~m----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~ 288 (430)
.+.+.++ .... +.............++...|+.+.|..+++.+.... . ..........-++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333222 1111 111111222345556788999999999999886322 1 1234445566677899
Q ss_pred cchhHHHHHHHHHHhCC
Q 043370 289 KRWQGVSEFREAMRERN 305 (430)
Q Consensus 289 g~~~~a~~~~~~m~~~g 305 (430)
|++++|.+.+......+
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998876543
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=3.3e-06 Score=81.90 Aligned_cols=299 Identities=13% Similarity=0.096 Sum_probs=191.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP-DKITFVSV 78 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 78 (430)
.-|..+|-.|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.| |...+...
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 34677888898999999999999999987653 345678888888888888888888887765432223 33334333
Q ss_pred HHHHh-ccCChHHHHHHHHHHHH--------------------------------------------------cCCCCcH
Q 043370 79 ISSCS-ELATLGQGQQIHAEVVK--------------------------------------------------AGASLDV 107 (430)
Q Consensus 79 l~~~~-~~g~~~~a~~~~~~~~~--------------------------------------------------~g~~~~~ 107 (430)
-..|. +.+.++++..+-.+++. .+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 33443 34445555544444433 1111 22
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC-------------
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLEC----EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK-EF------------- 169 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~------------- 169 (430)
.+..-+.--|+..++++.|.+...+. ...++..|..+.-.+...+++.+|+.+.+..... |.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 22222344456666777776666543 2346677777777777777777777666544321 10
Q ss_pred -----------------------------------------C--------------------------------------
Q 043370 170 -----------------------------------------E-------------------------------------- 170 (430)
Q Consensus 170 -----------------------------------------~-------------------------------------- 170 (430)
.
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 0
Q ss_pred ---CC------HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043370 171 ---AN------DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN 240 (430)
Q Consensus 171 ---p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 240 (430)
|+ ...+......+.+.+..++|...+.+..+. .+.....|......+...|++++|.+.|... -+.|+
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 00 001111222233334444444444444321 1123344555556667778888888887766 66774
Q ss_pred -HHHHHHHHHHHHhcCChhHHHH--HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 241 -AIIWKTLLSACKTHKSTDMAGR--IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 241 -~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+.+..++...+...|+...|.. ++..+.+++|.++..|..|...+.+.|+.++|.+.|..-.+-
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6678888888999999999988 999999999999999999999999999999999999987653
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=2.6e-05 Score=73.31 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHH--
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG-FRPDKITF-VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVIS-- 111 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-- 111 (430)
....|..+...+...|+.+++...+.+..+.. ..++.... ......+...|++++|..++++..+..+ .|...+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHh
Confidence 34567777788888899999877777766542 12233222 2223345678999999999999988743 3544444
Q ss_pred -HHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 112 -SLISMYSRCGCLDDSVKTFLECEYS---DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 112 -~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
.+.......|..+.+.+.++..... .......+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222223356666677776653322 23444556678889999999999999999864 445667788888999999
Q ss_pred cHHHHHHHHHHHhhhcCCccCH--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHH-H-H--HHHHHHHhcCChh
Q 043370 188 LKEKGMEFFDLMVKKYRRKPRL--EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA--NAII-W-K--TLLSACKTHKSTD 258 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~~~~-~-~--~ll~~~~~~~~~~ 258 (430)
++++|..++++........|+. ..|..+...+...|++++|..++++. ...| .... . + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999987642222333 34567888999999999999999986 2223 2111 1 1 2333344555444
Q ss_pred HHHHH---HHHHhcCCCC--CChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 259 MAGRI---AEEILGVNPQ--DAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 259 ~a~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
.+.+. ........|. ..........++...|+.++|...++.+....
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44443 2221111121 22233357778889999999999999987643
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=1.6e-05 Score=70.24 Aligned_cols=289 Identities=12% Similarity=0.087 Sum_probs=210.7
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHH---HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccC
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLI---AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV-SVISSCSELA 86 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g 86 (430)
-|...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|.+.++. +||-..-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3556667788999999999988888888888775 4689999999999999998874 78854422 2345567899
Q ss_pred ChHHHHHHHHHHHHcCCCCc--HhH------------HHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLD--VGV------------ISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYG 149 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~ 149 (430)
.+++|..-|+.+++.....+ ..+ ....+..+...|+...|+.....+. .-|+..|..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 99999999999988754211 111 1223444566788888888887654 347778888888999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhH----HHHH---HH-----
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEH----YTCV---VD----- 217 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---i~----- 217 (430)
..|++..|+.=++..-+.. ..+..++.-+-..+...|+.+.++...++-. .+.||-.. |-.| +.
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998887776543 3455666667777788888888887777765 45666432 2111 11
Q ss_pred -HHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccc
Q 043370 218 -LLGRCGYLDEAAALIRNM-PVKANA-----IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKR 290 (430)
Q Consensus 218 -~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 290 (430)
...+.+++.++.+-.+.. ...|.. ..+..+-.++...+++.+|++...++++.+|+|..++.--..+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 123456666666665554 445542 2344555667888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 043370 291 WQGVSEFREAMRERN 305 (430)
Q Consensus 291 ~~~a~~~~~~m~~~g 305 (430)
+++|..-|+...+.+
T Consensus 357 YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 357 YDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876543
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=2.6e-06 Score=73.60 Aligned_cols=283 Identities=9% Similarity=0.025 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHh
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPIR---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVS-VISSCS 83 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~ 83 (430)
-+++.+.-+.+..++++|++++..-.++ +......|..+|-...++..|-..++++-.. .|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3667777788899999999998765543 5667788888999999999999999999764 565555543 244455
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH----HHhcCCHHHHHHHHhccC-CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISM----YSRCGCLDDSVKTFLECE-YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+.+.+..|..+...|... ....+-.+.. -...+++..++.+.++.+ +.+..+.+.......+.|++++|+
T Consensus 90 ~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 667888888888777542 2222222221 234678888888999888 467777777766778899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-------------CH--------hHHHHHHH
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-------------RL--------EHYTCVVD 217 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~--------~~~~~li~ 217 (430)
+-|+...+-|---....|+..+ +..+.++.+.|.++..+++++ |+.. |+ -+-+.++.
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9999887754333456676555 455678999999999998876 4321 11 12334444
Q ss_pred H-------HhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 218 L-------LGRCGYLDEAAALIRNMPV----KANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 218 ~-------~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
+ +.+.|+++.|.+-+..||- ..|++|...+.- .-..+++..+.+-+.-+++++|-.+.||..++-.|+
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3 4578999999999999942 246777655421 223456777788888888999988899999999999
Q ss_pred hccchhHHHHHHHH
Q 043370 287 SAKRWQGVSEFREA 300 (430)
Q Consensus 287 ~~g~~~~a~~~~~~ 300 (430)
+..-++-|..++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 99999999988764
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=7.4e-06 Score=75.24 Aligned_cols=253 Identities=10% Similarity=0.032 Sum_probs=170.3
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
...+++..|.++|++.+.-. ..+...|.--+..=.+...+..|..+++..+.. ++.-...|.-.+.|=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHH
Confidence 34566677888888877644 345556666666667777888888888887765 2333455666666777778888888
Q ss_pred HHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCC
Q 043370 128 KTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRR 205 (430)
Q Consensus 128 ~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 205 (430)
++|+.-. +||...|++.|.-=.+....+.|..+|++..- +.|+..+|.--..-=.+.|.+..+..+|....+..|-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 8888743 67888888888888888888888888888776 4688888877777777788888888888887765443
Q ss_pred cc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHH-----HHHHhcCCC
Q 043370 206 KP-RLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKANAIIWKTLLSACKTHKS---TDMAGRI-----AEEILGVNP 272 (430)
Q Consensus 206 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~---~~~a~~~-----~~~~~~~~p 272 (430)
.- ....+.+...-=.++..++.|.-+|+-. |.......|..+..--.+.|+ +++++-- ++.++..+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 21 1233444444445666777777776543 322224445555444444444 3333322 344456778
Q ss_pred CCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 273 QDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 273 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.|..+|.-.++.-...|+.+...++++.....
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 88888888888888888888888888877643
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=1.2e-06 Score=89.68 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=167.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEYS--------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
....|-..|......+++++|++++++.... -.-.|.++++.-...|.-+...++|++..+.- -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 5667888899999999999999999886521 24568888888788888889999999998752 1234588
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKANAIIWKTLLSACKT 253 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~ 253 (430)
.|...|.+.+..++|.++++.|.+.++ .....|...++.+.+..+-++|..++.+. |.+-......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999876 56788999999999999999999998876 333345566667777889
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCC
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKK 308 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 308 (430)
+|+.+++..+|+..+.-.|.....|...++.-.+.|+.+.++.+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999998888754
No 86
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.6e-08 Score=58.64 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=24.5
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 102 GASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 102 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.3e-06 Score=75.41 Aligned_cols=180 Identities=12% Similarity=0.002 Sum_probs=118.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CH---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEY--S-DV---VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND----VT 175 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 175 (430)
....+..+...|.+.|++++|...|+++.. | +. .+|..+..+|.+.|++++|+..|+++.+.. |+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 456677777788888888888888876542 2 22 456777778888888888888888887652 321 13
Q ss_pred HHHHHHHhhhc--------CcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 043370 176 FVSLLYACSHC--------GLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKT 246 (430)
Q Consensus 176 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 246 (430)
+..+..++... |+.++|.+.++.+.+. .|+. ..+..+.... ...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence 44444455443 6677778887777654 2332 2222211110 000000 001123
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+...+...|+++.|...++++.+..|++ +..+..++.++...|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456889999999999999999887643 4688999999999999999999999887543
No 88
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=1.6e-05 Score=72.59 Aligned_cols=231 Identities=11% Similarity=0.070 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
+++.+-..+...++.++|+.+..++++. .|+. .+|+.--.++...| +++++...++.+.+...+ +..+|+-....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 4555555566667777777777777764 3433 34554444455555 456777777776665433 45555544444
Q ss_pred HHhcCCH--HHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH
Q 043370 117 YSRCGCL--DDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 117 ~~~~g~~--~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 191 (430)
+.+.|.. +++..+++.+. .++..+|+.....+...|+++++++.++++++.+. -|...|+.....+.+.+...
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~- 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG- 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc-
Confidence 4444442 44455554433 33455566555555566666666666666655542 23333443333322221100
Q ss_pred HHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChhHHHHHHH
Q 043370 192 GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRN-MPVKA-NAIIWKTLLSACKTH----KSTDMAGRIAE 265 (430)
Q Consensus 192 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~----~~~~~a~~~~~ 265 (430)
+ .....+++.+...+ +...| |...|+.+...+... ++..+|...+.
T Consensus 194 ------------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 194 ------------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred ------------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 0 00012334444422 23344 556677666666653 33455777777
Q ss_pred HHhcCCCCCChhHHHHHHHHHhcc------------------chhHHHHHHHHHH
Q 043370 266 EILGVNPQDAAPYVLLSNIHASAK------------------RWQGVSEFREAMR 302 (430)
Q Consensus 266 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 302 (430)
+....+|.++.+...|+..|+... ..++|.++++.+.
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 777777777778888888887632 2356778888773
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=2.5e-06 Score=80.11 Aligned_cols=246 Identities=11% Similarity=0.059 Sum_probs=182.8
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 043370 46 GKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125 (430)
Q Consensus 46 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 125 (430)
-+.++|+..+|.-.|+...+.+ +-+...|.-|....+..++-..|+..+.+.++..+. |..+.-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3678999999999999998875 557788999998889999999999999999987544 78888899999999999999
Q ss_pred HHHHHhccCCCC-HhHHHHHH---------HHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhhcCcHHHHHH
Q 043370 126 SVKTFLECEYSD-VVLWSSMI---------AAYGFHGKGEEAINLFEQME-QKEFEANDVTFVSLLYACSHCGLKEKGME 194 (430)
Q Consensus 126 A~~~~~~~~~~d-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 194 (430)
|.+.++...... ...|...- ..+..........++|-++. +.+.++|......|.-.|--.|.+++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988752100 00000000 12222233456666666664 44444677777777777888999999999
Q ss_pred HHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 195 FFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 195 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
.|+.++. +.| |...||-|...++...+.++|..-|++. .++|+ +.++..|.-+|...|.+++|...|-.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999984 466 6789999999999999999999999988 77886 4566677778999999999999988887443
Q ss_pred CC----------CChhHHHHHHHHHhccchhHHHH
Q 043370 272 PQ----------DAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 272 p~----------~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
+. +...|..|=.++...++.|-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 31 12456666666666666654443
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=1.3e-05 Score=70.52 Aligned_cols=183 Identities=7% Similarity=-0.056 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH--h
Q 043370 34 IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK---ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDV--G 108 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~ 108 (430)
+.....+..+...+.+.|++++|...|++..... +.+. .++..+..++...|++++|...++.+++....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4567788888889999999999999999988753 2222 46677888888999999999999999876433111 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 109 VISSLISMYSRC--------GCLDDSVKTFLECEY--S-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 109 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
++..+...+.+. |+.++|.+.|+.+.. | +...+.++..... .... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence 455566666654 677778888777642 2 2222221111000 0000 0 00112
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.+...+.+.|+.++|...+....+.+.-.| ....+..+..+|...|++++|...++.+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344556777778887777777776543223 3466777777777788888877777766
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=6.5e-05 Score=66.73 Aligned_cols=289 Identities=12% Similarity=0.050 Sum_probs=172.6
Q ss_pred HHHHHHHHcCChHHHHHHHccCCC--CCHHHHHH-HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPI--RNVIAWIT-LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT 87 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 87 (430)
+|.++.-..-.+++|++++.++.. |+-...|. |.-+|.+..-++-+.++++-.++. ++-++...+..+....+.=.
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhc
Confidence 344444445568889999988763 44444443 345677888888888888887765 23334444443333333211
Q ss_pred hHHHHHHH--------------HHHHHcCC------------CC-----cHhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 043370 88 LGQGQQIH--------------AEVVKAGA------------SL-----DVGVISSLISMYSRCGCLDDSVKTFLECEYS 136 (430)
Q Consensus 88 ~~~a~~~~--------------~~~~~~g~------------~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 136 (430)
-..|.+-. +.+.+.++ -| =+...-.|+--|.+.+++.+|..+.+++.+.
T Consensus 235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 11122111 12222211 00 1233345666788999999999999998766
Q ss_pred CHhHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC
Q 043370 137 DVVLWSSMIAAYGFHG-------KGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR 208 (430)
Q Consensus 137 d~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 208 (430)
.+.-|-.-.-.++..| +..-|.+.|+-.-+.+..-|.. --.++.+++.-..++|+..-++..+.. +=...|
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD 393 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDD 393 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcc
Confidence 6554433333333333 3455666666554444433322 233455555566778888888888854 333334
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCChhHHHHHHHHHhcCC-CCCC-hhHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVK-ANAIIWKTLLSA-CKTHKSTDMAGRIAEEILGVN-PQDA-APYVLLSN 283 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~ 283 (430)
...+ .+.++++..|.+.+|+++|-.+ +.+ .|..+|.+++.- |...++++.|..++-+ .+ |.+. .....+.+
T Consensus 394 ~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 394 DFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIAN 469 (557)
T ss_pred hhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHH
Confidence 4444 4788899999999999999887 222 366777666554 6777888887665433 33 3222 23345567
Q ss_pred HHHhccchhHHHHHHHHHHhCC
Q 043370 284 IHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g 305 (430)
-|.+++.+--|.+.|+.+...+
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHccC
Confidence 7888888888888888887654
No 92
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=9.5e-05 Score=67.62 Aligned_cols=209 Identities=10% Similarity=-0.020 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCC---CHHHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPIR---NVIAWITLIAGKAQNG-LAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
+++.+-..+.+.++.++|+.+.+.+... +..+|+..-..+...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4556666777788999999999887632 5567777767777777 6899999999999875 445566776655555
Q ss_pred ccCC--hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhc---CCh-
Q 043370 84 ELAT--LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFH---GKG- 154 (430)
Q Consensus 84 ~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~---g~~- 154 (430)
+.|. .+.+..+.+.+++.... |..+|+-..-.+.+.|+++++++.++++.+ .|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 6665 36778888899887654 889999999999999999999999998764 4778888877666554 222
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc----CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 155 ---EEAINLFEQMEQKEFEANDVTFVSLLYACSHC----GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 155 ---~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
+++++...+++... +-|...|+.+...+... +...+|...+.+..+. -..+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHh
Confidence 46677776766652 44566777777766652 3345577777665532 12355666777777764
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=9.2e-06 Score=69.09 Aligned_cols=118 Identities=12% Similarity=0.153 Sum_probs=85.1
Q ss_pred cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hhHH
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSA-CKTHKS--TDMA 260 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~--~~~a 260 (430)
.++.+++...++...+. -+.+...|..|...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566666666666542 3446777788888888888888888888776 4445 55666666665 356666 4788
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..++++.++.+|.++.++..+...+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888876543
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=4e-05 Score=79.04 Aligned_cols=239 Identities=12% Similarity=0.175 Sum_probs=174.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----cHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 60 YNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASL-----DVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 60 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
|+++.... +-....|-.-+.-..+.++.+.|+++.+++++. +.+ -..+|.+++++-..-|.-+...++|++..
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444432 334566777888888889999999999888764 211 23578888888888888888899999876
Q ss_pred C-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH
Q 043370 135 Y-SD-VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY 212 (430)
Q Consensus 135 ~-~d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 212 (430)
+ -| -..|..|...|.+.+..++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+...-.-.....
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 4 34 356788889999999999999999999876 45566788888999999999999999999887642111134455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC--CCCC-hhHHHHHHHHHh
Q 043370 213 TCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN--PQDA-APYVLLSNIHAS 287 (430)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~-~~~~~l~~~~~~ 287 (430)
.-.+++-.+.|+.+.+..+|+.. .-.| -...|+..+..-.++|+.+.+..+|+++..+. |... ..|.-.+..--.
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 56677778899999999999887 2223 46689999999999999999999999998665 4333 344455555556
Q ss_pred ccchhHHHHHHHHH
Q 043370 288 AKRWQGVSEFREAM 301 (430)
Q Consensus 288 ~g~~~~a~~~~~~m 301 (430)
.|+-+.++.+-.+.
T Consensus 1684 ~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARA 1697 (1710)
T ss_pred cCchhhHHHHHHHH
Confidence 66666655554433
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=8.8e-05 Score=78.96 Aligned_cols=296 Identities=11% Similarity=-0.028 Sum_probs=187.9
Q ss_pred HHHHHHHHHcCChHHHHHHHccCC----CC------CH--HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----H
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMP----IR------NV--IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK----I 73 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~----~~------~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 73 (430)
......+...|++++|...++... .. .. .....+...+...|++++|...+++..+.-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 334455567788888887776432 11 11 11222334466889999999999888763111221 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-------C----C
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKA----GAS-LDVGVISSLISMYSRCGCLDDSVKTFLECEY-------S----D 137 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----d 137 (430)
..+.+...+...|++++|...+.+.... |.. +...+...+...+...|++++|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3445556667789999999988887643 111 1123455667788889999999988776431 1 1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH-
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKE--FEAN--DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY- 212 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~- 212 (430)
...+..+...+...|++++|...+++..... ..+. ...+..+.......|+.++|.+.+...............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2234455566777899999999998875431 1122 2334445566778899999999888875421111111111
Q ss_pred ----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcCC------CCCCh
Q 043370 213 ----TCVVDLLGRCGYLDEAAALIRNMPVK--ANA----IIWKTLLSACKTHKSTDMAGRIAEEILGVN------PQDAA 276 (430)
Q Consensus 213 ----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~ 276 (430)
......+...|+.+.|..++...... ... ..+..+..++...|+.++|...++++.... +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224455689999999998776211 111 113455566888999999999999987432 11234
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 277 PYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 277 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+...+..++...|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67778889999999999999999887644
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=9.7e-06 Score=68.95 Aligned_cols=116 Identities=8% Similarity=0.035 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH-HHhcCC--HHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM-YSRCGC--LDDS 126 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~--~~~A 126 (430)
.++.++++..+++.++.+ +.|...|..+...+...|+++.|...+++..+.... +..++..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555443 445555555555555566666666666655554322 45555555553 344444 3555
Q ss_pred HHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 127 VKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 127 ~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
.+++++.. ..++.++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555543 224455555555555555555555555555554
No 97
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.53 E-value=0.00038 Score=66.72 Aligned_cols=282 Identities=13% Similarity=0.142 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CC----HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC----------
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RN----VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR---------- 69 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------- 69 (430)
..|..+.+.|-..|+++.|+.+|++..+ +. ..+|-.-...=.+..+++.|+++.++.....-+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688899999999999999999998753 22 246666667777888999999998877532111
Q ss_pred -C------CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCH
Q 043370 70 -P------DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDV 138 (430)
Q Consensus 70 -p------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~ 138 (430)
+ +...|...+..--..|-++..+.+|+.+++..+. ++.+.-.....+-...-++++.+++++-. -|++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1 1233444555555668888999999999887665 44444445555666777899999999854 3444
Q ss_pred -hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--hhcCcHHHHHHHHHHHhhhcCCccC--Hh
Q 043370 139 -VLWSSMIAAYGF---HGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC--SHCGLKEKGMEFFDLMVKKYRRKPR--LE 210 (430)
Q Consensus 139 -~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 210 (430)
..||+-+.-+.+ ..+.+.|.++|++.++ |.+|...-+.-|+.+- -.-|....|..++++... ++++. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 467776655544 2478999999999998 6787765554454432 245888899999999865 45553 35
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHhcCC-CC-CChhHHHHHHH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIW---KTLLSACKTHKSTDMAGRIAEEILGVN-PQ-DAAPYVLLSNI 284 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~ 284 (430)
.|+..|.--+..=-+.....+|++. ..-||...- -.....-++.|.++.|..++....++. |. ++..|...=..
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 6776665332221112222333332 222443332 223334567899999999998887765 42 55666666666
Q ss_pred HHhccchh
Q 043370 285 HASAKRWQ 292 (430)
Q Consensus 285 ~~~~g~~~ 292 (430)
-.+.|+-+
T Consensus 704 EvrHGned 711 (835)
T KOG2047|consen 704 EVRHGNED 711 (835)
T ss_pred HHhcCCHH
Confidence 67788743
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=6.1e-06 Score=79.64 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=165.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
+|-...--.+.+.+.+.|-...|..+|++ ...|.-.|.+|...|+..+|..+..+..+. +||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 44445556788889999999999999987 456778889999999999999988887773 78999999999888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCHhHHHHHHHHHHhcCChHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLEC---EYSDVVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~d~~~~~~li~~~~~~g~~~~A~~ 159 (430)
-...-+++|.++.++.... .-..+.....+.++++++.+.|+.- ..--..+|.....+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777788888888765432 2222333334478889998888863 33456788888888888999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 160 LFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 160 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.|..-... .|| ...|+.+-.+|.+.++..+|...+.+..+- + ..+...|...+-...+.|.+++|.+.+.++
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99887763 565 466999999999999999999999988764 4 344556666666777889999998888877
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=4e-06 Score=67.45 Aligned_cols=121 Identities=11% Similarity=0.002 Sum_probs=80.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV 237 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 237 (430)
.+|++..+. .|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444442 3443 444556667777777777777777642 2335666777777777777777777777776 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 238 KA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 238 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
.| +...|..+..++...|+.++|...+++.++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 5666777777777788888888888888888887777776555444
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=4.3e-05 Score=77.82 Aligned_cols=230 Identities=10% Similarity=0.084 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKIT-FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
.+...|..|+..|...+++++|.++.+...+. .|+... |..+...+.+.++...+..+ .+... .+...-++..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHH
Confidence 36678888888888888888888888866654 455433 22333344555555444443 22211 0011111111
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
-..|...|++- .+..++..+..+|-+.|+.++|...|+++++.. +-|..+.+.+...++.. ++++|.
T Consensus 103 e~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 103 EHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred HHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 11111111111 122345556666666666666666666666654 33455666666666666 666666
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHH---hh--cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLL---GR--CGYLDEAAALIRNM----PVKANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~---~~--~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
+++.+....+ -+...|+.+.... +. .-+++.-..+.+.+ ++.--+.++-.+-..|...++++++..++
T Consensus 170 ~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 170 TYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 6666655431 0111111111110 00 01111111111111 22234455666667788888999999999
Q ss_pred HHHhcCCCCCChhHHHHHHHHH
Q 043370 265 EEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 265 ~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999988888888888876
No 101
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.50 E-value=0.00035 Score=66.93 Aligned_cols=288 Identities=14% Similarity=0.163 Sum_probs=181.1
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCCC----------CHHHHHHHHHHHHHCCChhHH---HHHHHHHHHCCCCCC
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIR----------NVIAWITLIAGKAQNGLAEDV---LDQYNLMRMVGFRPD 71 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g~~p~ 71 (430)
++..-+--|..+++.+++++|.+.+...... +-..|+.+-...+++-+.-.. .++++.+... -||
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftD 245 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTD 245 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcH
Confidence 3444666788888999999998888776532 344666666665555443332 2333333322 344
Q ss_pred H--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc----------------C------CHHHHH
Q 043370 72 K--ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC----------------G------CLDDSV 127 (430)
Q Consensus 72 ~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------------g------~~~~A~ 127 (430)
. ..|++|..-|.+.|.++.|..+|++.+..- .+..-++.+.+.|+.- | +++-..
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 3 457788888888888888888888776642 1233334444444321 1 122223
Q ss_pred HHHhccCC---------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHhhhc
Q 043370 128 KTFLECEY---------------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN------DVTFVSLLYACSHC 186 (430)
Q Consensus 128 ~~~~~~~~---------------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~~ 186 (430)
.-|+.+.. .++..|..-+..+ .|+..+-...|.+..+. +.|- ...|..+...|...
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 33333221 2445554444333 57778888888888765 3442 23577778888899
Q ss_pred CcHHHHHHHHHHHhhhcCCccC---HhHHHHHHHHHhhcCCHHHHHHHHHhC---CCC-----------------CCHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPR---LEHYTCVVDLLGRCGYLDEAAALIRNM---PVK-----------------ANAII 243 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-----------------p~~~~ 243 (430)
|+++.|+.+|++..+- ..+-- ..+|..-.++=.+..+++.|+++.++. |-. .+...
T Consensus 401 ~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred CcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999988653 22111 345666666677888899999988876 211 12445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 244 WKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
|...++.--..|-++....++++++++.--+|..-......+-...-++++.+++++
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 777777767778888888889988877654566555556666677777788777763
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=1.5e-05 Score=80.07 Aligned_cols=210 Identities=8% Similarity=0.006 Sum_probs=148.2
Q ss_pred HHHHHHHHHhccCChHHH-HHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----CHHHHHHHHhccCCCCHhHHHHHHHHH
Q 043370 74 TFVSVISSCSELATLGQG-QQIHAEVVKAGASLDVGVISSLISMYSRCG----CLDDSVKTFLECEYSDVVLWSSMIAAY 148 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~d~~~~~~li~~~ 148 (430)
....+=.+.+..|..+++ .++++++.+ ++...++.. .+.++..+...- ..++..+-.|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRY-PHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 333444455667766655 556666543 222222222 222333333322 23588888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
.+.|.+++|..+++...+. .|| ......+...+.+.+.+++|....++.... -+-+......+..++.+.|++++
T Consensus 97 ~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999885 666 456778888999999999999999999853 33356778888999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 228 AAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 228 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
|..+|++. .-.| +..+|..+..++...|+.++|...|++..+...+-...|+.++ ++...-...++.+.-.+
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHcCccc
Confidence 99999998 2344 4788999999999999999999999999977654555555443 23334445555555444
Q ss_pred C
Q 043370 306 V 306 (430)
Q Consensus 306 ~ 306 (430)
.
T Consensus 247 ~ 247 (694)
T PRK15179 247 D 247 (694)
T ss_pred c
Confidence 3
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=0.00016 Score=69.19 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=95.3
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
...|+-++|....+.-.+.+ .-+.+.|..+.-.+-...++++|.+.|..+.+.+.. |..++.-|.-.-++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHH
Confidence 34455566655555544433 224455555555555555566666666666555422 5555555555555555555554
Q ss_pred HHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh------hhcCcHHHHHHHHH
Q 043370 128 KTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYAC------SHCGLKEKGMEFFD 197 (430)
Q Consensus 128 ~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~------~~~g~~~~a~~~~~ 197 (430)
..-.... ...-..|.....++.-.|++..|..+.++..+.- -.|+...+.....-. ...|.++.|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4444332 2233555555556666666666666666555442 134444444333222 12445555555544
Q ss_pred HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 043370 198 LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKT 246 (430)
Q Consensus 198 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 246 (430)
.-.. .+......-..-.+.+.+.|++++|..++..+ ...||..-|.-
T Consensus 210 ~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 210 DNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred hhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 4332 11112222233445555666666666666555 33344444433
No 104
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=0.00042 Score=66.49 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
+.|..+.-.+-...++++|++.|.... +.|...|.-+.-.-++.|+++.....-.++.+.. +-....|.....+.-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQH 154 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHH
Confidence 456655555555666777777776543 3355666666666666667776666666666542 223345666666666
Q ss_pred ccCChHHHHHHHHHHHHcC-CCCcHhHHHHH------HHHHHhcCCHHHHHHHHhccCCC--CH-hHHHHHHHHHHhcCC
Q 043370 84 ELATLGQGQQIHAEVVKAG-ASLDVGVISSL------ISMYSRCGCLDDSVKTFLECEYS--DV-VLWSSMIAAYGFHGK 153 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--d~-~~~~~li~~~~~~g~ 153 (430)
-.|+...|..+.++..+.. -.|+...+.-. .....+.|..+.|.+.+...... |- ..-.+....+.+.++
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh
Confidence 6788888888888776654 23444444222 22345677777777777655432 22 222344566778889
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-hcCcHHHHH-HHHHHHhhhc----------------------------
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACS-HCGLKEKGM-EFFDLMVKKY---------------------------- 203 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~-~~~~~~~~~~---------------------------- 203 (430)
.++|..++..++.. .||..-|...+..+. +.-+.-++. .+|....+.+
T Consensus 235 lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 99999999998886 567666554444333 222222222 3333332211
Q ss_pred -----CCccCHhHHHHHHHHHhhcCCHHH----HHHHHHhC-C------------CCCCHHHHHHH--HHHHHhcCChhH
Q 043370 204 -----RRKPRLEHYTCVVDLLGRCGYLDE----AAALIRNM-P------------VKANAIIWKTL--LSACKTHKSTDM 259 (430)
Q Consensus 204 -----~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~~~~l--l~~~~~~~~~~~ 259 (430)
|+++ ++..+...|-.-...+- +..+...+ + ..|....|... ...+-..|+++.
T Consensus 313 ~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 2211 22222222222111111 11111111 1 13555556543 334667777777
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 260 AGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
|....+..++..|.-...|..=.+++.+.|..++|..++++.++.+
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 7777777777777666666666777777777777777777766544
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=9.6e-06 Score=78.33 Aligned_cols=189 Identities=15% Similarity=0.118 Sum_probs=130.6
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 102 GASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181 (430)
Q Consensus 102 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 181 (430)
+++|-...-..+...+.++|-..+|..+|++. ..|.-.|.+|...|+..+|..+..+..+. +||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555566667888899999999999999874 56778888999999999999988887773 788888888888
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 259 (430)
..-..--+++|+++.+....+ .-..+.....+.++++++.+.|+.- .++| -..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 877777778888887765432 1111111222356666666666643 3333 45566666666666666677
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 260 AGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
|.+.|.....++|++..+|+.+..+|.+.|+-.+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777766666677666677777777777776666666666665544
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=1.3e-05 Score=68.48 Aligned_cols=156 Identities=11% Similarity=0.068 Sum_probs=99.6
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 043370 41 ITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRC 120 (430)
Q Consensus 41 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 120 (430)
..+-..+...|+-+.+..+....... -+-|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555666667766666666654432 13344445556666677777777777777766543 44777777777777777
Q ss_pred CCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 121 GCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 121 g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
|+.+.|..-|.+.. ..+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777766533 3456666777777777777777777777766653 2245555556666677777777777655
Q ss_pred HH
Q 043370 198 LM 199 (430)
Q Consensus 198 ~~ 199 (430)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.00071 Score=72.12 Aligned_cols=288 Identities=9% Similarity=-0.041 Sum_probs=180.0
Q ss_pred HHHcCChHHHHHHHccCCC----CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC--C----CCCHH--HHHHHHHHHh
Q 043370 16 YMKSGSLVEGEKVIRLMPI----RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG--F----RPDKI--TFVSVISSCS 83 (430)
Q Consensus 16 ~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~~ 83 (430)
....|+++.+...++.++. .+..........+...|++++|...+......- . .|... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4456677777777776641 122222344455667899999999888775421 0 11111 1222334456
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHhccCC-------CC--HhHHHHHHHHHHh
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDV----GVISSLISMYSRCGCLDDSVKTFLECEY-------SD--VVLWSSMIAAYGF 150 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~d--~~~~~~li~~~~~ 150 (430)
..|+++.|...++...+.-...+. ...+.+...+...|++++|...+++... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988763222221 3446677778889999999998877541 11 2345556677888
Q ss_pred cCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC-Ccc--CHhHHHHHHHHHh
Q 043370 151 HGKGEEAINLFEQMEQK----EFE--A-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR-RKP--RLEHYTCVVDLLG 220 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p--~~~~~~~li~~~~ 220 (430)
.|++++|...+++.... |.. | ....+..+...+...|++++|...+.+...... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876542 211 1 223344455566778999999998888754211 112 2334555667788
Q ss_pred hcCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHhcCCCCCChh----HHHHHHHHHh
Q 043370 221 RCGYLDEAAALIRNM----PVKANAIIWK-----TLLSACKTHKSTDMAGRIAEEILGVNPQDAAP----YVLLSNIHAS 287 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m----~~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~ 287 (430)
..|++++|.+.+++. ........+. ..+..+...|+.+.|...+.......+..... +..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999998887765 1111111111 11233556889999998887765433222211 4567888999
Q ss_pred ccchhHHHHHHHHHHh
Q 043370 288 AKRWQGVSEFREAMRE 303 (430)
Q Consensus 288 ~g~~~~a~~~~~~m~~ 303 (430)
.|++++|...+++...
T Consensus 704 ~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 704 LGQFDEAEIILEELNE 719 (903)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999888754
No 108
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=5e-07 Score=53.02 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 173 (430)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 109
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=4.6e-07 Score=53.19 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK 72 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 72 (430)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999873
No 110
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=1e-05 Score=75.38 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=71.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
+|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++.+.++.. +.+..........+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34455555666777777777766552 432 2335555555556666666666666543 235555666666666677
Q ss_pred CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 122 CLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 122 ~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
+.+.|+.+.+++. +.+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777766654 2345567777777777777777776666554
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=1.4e-05 Score=64.32 Aligned_cols=91 Identities=8% Similarity=-0.064 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
+..+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+...+... .+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344444555555555555555554432 23444445555555555555555555555554332 244444444444444
Q ss_pred cCCHHHHHHHHhc
Q 043370 120 CGCLDDSVKTFLE 132 (430)
Q Consensus 120 ~g~~~~A~~~~~~ 132 (430)
.|+.++|...|+.
T Consensus 105 ~g~~~eAi~~~~~ 117 (144)
T PRK15359 105 MGEPGLAREAFQT 117 (144)
T ss_pred cCCHHHHHHHHHH
Confidence 4444444444444
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00057 Score=58.68 Aligned_cols=243 Identities=11% Similarity=0.031 Sum_probs=122.9
Q ss_pred cCChHHHHHHHccCC-C-CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHH
Q 043370 19 SGSLVEGEKVIRLMP-I-RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQ-GQQIH 95 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~ 95 (430)
.|++..++..-.... . .++..---|-++|...|++...+.- .... -.|....+..+.......+..+. -.++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 455555555443322 2 2333334455666666665443322 2221 13333334333333333333332 22344
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVT 175 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 175 (430)
+.+.......+......-...|+..|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+. .+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 44444444444344444455677777777777777663332333222 33445556677777777777653 25566
Q ss_pred HHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 043370 176 FVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLS 249 (430)
Q Consensus 176 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 249 (430)
.+.|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-+..+....|++++|..++++. ....++.+...++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 6656555533 3456666666766654 24566666666666666666666666666655 11123444444444
Q ss_pred HHHhcCC-hhHHHHHHHHHhcCCC
Q 043370 250 ACKTHKS-TDMAGRIAEEILGVNP 272 (430)
Q Consensus 250 ~~~~~~~-~~~a~~~~~~~~~~~p 272 (430)
.....|. .+.-.+...++....|
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCC
Confidence 4333333 3334455555555555
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=7.8e-05 Score=63.76 Aligned_cols=152 Identities=15% Similarity=0.064 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
..+-..+.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -++|..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 334444444555554444444422 224444444555555555555555555555443 2445555555555555555
Q ss_pred cHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 188 LKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNMPVK--ANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
+.++|..-|.+..+- .| +....+.|.-.|.-.|+++.|..++...-.. -|..+-..+.-.....|+++.|..+.
T Consensus 149 r~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555555432 22 2334444555555555555555555544111 13444444444455555555555444
Q ss_pred HH
Q 043370 265 EE 266 (430)
Q Consensus 265 ~~ 266 (430)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 33
No 114
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00023 Score=66.81 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=77.7
Q ss_pred HHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChH
Q 043370 14 HMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELATLG 89 (430)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~ 89 (430)
++.+..|+++.|+..|.... .+|-+.|..-..+|+..|++++|++=-.+-++ +.|+. ..|+-...++...|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999997543 45788888888999999999999876666655 46774 56888888888899999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
+|..-|.+-++.. +.|...++.|.+++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999988877764 33666666666666
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.00011 Score=63.95 Aligned_cols=175 Identities=12% Similarity=0.143 Sum_probs=108.1
Q ss_pred CChHHHHHHHccCC-CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043370 20 GSLVEGEKVIRLMP-IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV-GFRPDKITFVSVISSCSELATLGQGQQIHAE 97 (430)
Q Consensus 20 g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 97 (430)
+++..+..+.++.+ +.+..+-+......-+.|++++|++-|+...+- |.. ....|+..+.- .+.|+.+.|.+...+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHH
Confidence 44444444555444 234444444444556788888888888888774 343 34566665543 456888888888888
Q ss_pred HHHcCCCC-------------c---------------HhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHhHHHHH
Q 043370 98 VVKAGASL-------------D---------------VGVISSLISMYSRCGCLDDSVKTFLECEYS-----DVVLWSSM 144 (430)
Q Consensus 98 ~~~~g~~~-------------~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~l 144 (430)
++++|+.. | +..+|.-...+.+.|+.+.|.+.+-.|+++ |++|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 88776532 1 122333333456778888888888888753 66666655
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHH
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 198 (430)
.-.-. .+++.+..+-+.-+.+.. +-...||..++-.||+..-++.|-+++.+
T Consensus 284 Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 284 ALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 43322 344555555555555543 23456888888888888888887777654
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.34 E-value=0.0001 Score=71.47 Aligned_cols=137 Identities=17% Similarity=0.249 Sum_probs=68.2
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHH
Q 043370 80 SSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 80 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 159 (430)
.+......+.+|..+++.+..... -..-|..+.+-|+..|+++-|+++|-+.. .++-.|..|.+.|+|+.|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 334444566666666665554322 12234455566666666666666665432 23444556666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 160 LFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 160 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+-.+.. |.......|.+-..-.-..|++.+|.++|-.+. .|+. -|.+|-+.|..++..++..+-
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 554432 222233344444444455555555555544331 1222 244555555555555555443
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00015 Score=71.11 Aligned_cols=239 Identities=12% Similarity=0.079 Sum_probs=157.5
Q ss_pred chhHHHHHHH--HHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC---------CCCCCHH
Q 043370 5 DLVAGSSLAH--MYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV---------GFRPDKI 73 (430)
Q Consensus 5 ~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~ 73 (430)
|..+--++++ .|..-|+++.|.+-.+.++ +-..|..|.+.|.+..+.+-|.-.+-.|... .-.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4445555554 3667789999888776665 4577999999999999888887777666431 11232 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CHhHHHHHHHHHHhcC
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-DVVLWSSMIAAYGFHG 152 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-d~~~~~~li~~~~~~g 152 (430)
+=.-+.-....+|.+++|..+|++-.+ |..|=..|-..|.+++|.++-+.-..- --.||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 222222233578999999999998765 345566788899999998887643221 1234554555555567
Q ss_pred ChHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH
Q 043370 153 KGEEAINLFEQM----------EQKE---------FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213 (430)
Q Consensus 153 ~~~~A~~~~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 213 (430)
+.+.|++.|++. +... -..|...|..-....-..|..|.|+.+|....+ |-
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~f 942 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YF 942 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hh
Confidence 777777777652 2211 012344455555555678888888888887743 45
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 214 CVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+++...|-.|+.++|-++-++-+ |....-.|...|-..|++.+|...|.++.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 67777788888888888887765 55555566777888888888877776653
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=0.00016 Score=72.90 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHH
Q 043370 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMI 145 (430)
Q Consensus 69 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li 145 (430)
..+...+..|..+..+.|.+++|..+++...+..+. +......+...+.+.+++++|+..+++... .+....+.+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 445677777777777788888888888877775422 566667777778888888888887777653 2456666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHH
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTC 214 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 214 (430)
.++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|+...+. ..|...-|+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~ 227 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTR 227 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHH
Confidence 77777888888888888877632 333667777777777888888888888877664 2344444443
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00036 Score=71.34 Aligned_cols=215 Identities=9% Similarity=0.050 Sum_probs=138.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC--CCC-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH---------
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP--IRN-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK--------- 72 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------- 72 (430)
+...+..|+..|...+++++|.++.+... .|+ ...|-.+...+.+.++.+++..+ .+... +..+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~ 106 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHIC 106 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHHH
Confidence 45678999999999999999999988543 233 23343344466677776666555 33322 12222
Q ss_pred ----------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHH
Q 043370 73 ----------ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWS 142 (430)
Q Consensus 73 ----------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~ 142 (430)
..+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|++++...
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA--------- 175 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA--------- 175 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH---------
Confidence 566667777777788888888888888776 34777888888888877 888887776653
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc
Q 043370 143 SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC 222 (430)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 222 (430)
+..|...+++.++.++|.++... .|+...+ -.++.+.+....+..--+.++-.+...|-..
T Consensus 176 --V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 176 --IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred --HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 33366666777788888777775 3443322 2222233322222223345566677778888
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043370 223 GYLDEAAALIRNM-PVKA-NAIIWKTLLSACK 252 (430)
Q Consensus 223 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 252 (430)
++++++..+++.+ ...| |.....-++..|.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 8888888888887 4444 4555555666654
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.31 E-value=2.4e-05 Score=62.30 Aligned_cols=119 Identities=11% Similarity=-0.021 Sum_probs=96.5
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+....-.+...+...|++++|..+|+-. ...| +..-|-.|...|...|++++|+..+.....++|+++.++..+..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444555666677899999999999987 4556 5677888888899999999999999999999999999999999999
Q ss_pred HhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 043370 286 ASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMK 349 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 349 (430)
...|+.+.|.+.|+...... ..+|+..++....+..++.+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999775432 135666666666666665554
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.00014 Score=67.52 Aligned_cols=175 Identities=15% Similarity=0.095 Sum_probs=125.3
Q ss_pred HHHHHHHHhccCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 123 LDDSVKTFLECEY------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 123 ~~~A~~~~~~~~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
+.+++.--+.++. ++...+...+.+.........+..++.+-.+. .-...-|...+ .+...|..++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHH
Confidence 3344444444542 35556666666554433333333333322221 11223344333 455788999999999
Q ss_pred HHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
+.+.+. .+-|........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|.++++.....+|.+
T Consensus 330 ~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 330 QPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 998864 3345666677889999999999999999988 56676 6677788888999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
+..|..|..+|...|+..++...+.++.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999888887764
No 122
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.28 E-value=1.4e-06 Score=50.80 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP 70 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 70 (430)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 123
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=3.7e-05 Score=71.77 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+.. +-|...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3344566666777888888888888877666666667777777778888888888877652 334444555555677788
Q ss_pred cHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043370 188 LKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 239 (430)
+.+.|..+.+++.+ ..| +..+|..|..+|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 88888888888774 345 44678888888888888888888888876554
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.27 E-value=0.00028 Score=68.54 Aligned_cols=253 Identities=12% Similarity=0.122 Sum_probs=131.8
Q ss_pred cCChHHHHHHHccCCCCCHH--HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPIRNVI--AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHA 96 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 96 (430)
...+..|+.+++.+..+++. -|..+..-|+..|+++.|.++|-+. + .++-.|..|.+.|.++.|.++-.
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHH
Confidence 33444444444444433222 2334444455555555555554322 1 12333444555555555444432
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HH
Q 043370 97 EVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN--DV 174 (430)
Q Consensus 97 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ 174 (430)
+. .|.+..+..|.+-..-.-+.|++.+|+++|-.+..||. .|..|-++|..+..+++..+- .|+ ..
T Consensus 816 e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~d 883 (1636)
T KOG3616|consen 816 EC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHD 883 (1636)
T ss_pred Hh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhH
Confidence 22 23333344444444444455555555555555444443 344555556555555555432 233 23
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C---CHHHHHHH---
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVK-A---NAIIWKTL--- 247 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p---~~~~~~~l--- 247 (430)
|...+..-+-..|++..|...|-+.. -|.+-+.+|-.++.+++|.++-+.-+-. . -...|..-
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGG 953 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCc
Confidence 55566667777888888877766542 3566788888889999998887765211 0 12233221
Q ss_pred ---HHHHHhcCChhHHHH-------------HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 248 ---LSACKTHKSTDMAGR-------------IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 248 ---l~~~~~~~~~~~a~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+..+-++|-.+.|.. +.+-..+ -..+.....+..-+...|++++|-+-+-+..+.
T Consensus 954 daavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 954 DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 222344444444433 3322221 124456667777788999999998877766543
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00043 Score=58.97 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEYS-----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 186 (430)
-++-+...+|+.+.|..+++.+... -+.-..+| -+-..|++++|+++++.+.+.+ +.|.+++..=+...-..
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3344445566777777777665422 11112221 2344688999999999998875 55677777666666677
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT---HKSTDMAG 261 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~~~~~~a~ 261 (430)
|+.-+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -..| +...+..+...+.. ..+.+.|.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777888888777764 5678899999999999999999999999988 4455 45555555555332 33678899
Q ss_pred HHHHHHhcCCCCCChhHHHH
Q 043370 262 RIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~~~~l 281 (430)
+++.+.++++|.+...+..+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 99999999998655554444
No 126
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.00039 Score=68.40 Aligned_cols=252 Identities=12% Similarity=0.064 Sum_probs=168.0
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCC-C----------CH-HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPI-R----------NV-IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK 72 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 72 (430)
...+|..+..|+.+..+++-|.-.+..|.. + |. ..-.-....-.+.|-.++|+.+|++-.+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 346899999999999999999888888862 1 11 11112222345778899999999887753
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------------
Q 043370 73 ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY----------------- 135 (430)
Q Consensus 73 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------- 135 (430)
..+=..|...|.+++|.++-+.=-+..+ ..+|.....-+-..++++.|++.|++...
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 2333445567899999888754322222 23555566666677888888888876431
Q ss_pred ------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH
Q 043370 136 ------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL 209 (430)
Q Consensus 136 ------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 209 (430)
+|...|.-...-+-..|+.+.|+.+|..... |.+++...|-.|+.++|-++-++- | |.
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es----g---d~ 967 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES----G---DK 967 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc----c---cH
Confidence 2444454455555667899999999887653 567778888899999998886653 2 45
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------ChhHHHHHHHHHhcCCCCC
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK---------------STDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~p~~ 274 (430)
...-.|.+.|...|++.+|..+|.+. .++...|..|..++ +.-.|-++|++.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrA------qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~------- 1034 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRA------QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL------- 1034 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc-------
Confidence 55667899999999999999999876 23333333333332 223333444431
Q ss_pred ChhHHHHHHHHHhccchhHHHHH
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
...+..-+..|.++|.+.+|.++
T Consensus 1035 g~~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1035 GGYAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred chhhhHHHHHHHhhcchHHHHHH
Confidence 22334456678888888888765
No 127
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=1.9e-06 Score=50.17 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00052 Score=63.90 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=84.1
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-HhHHHHHHHHHHhcCChHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--SD-VVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d-~~~~~~li~~~~~~g~~~~A~~ 159 (430)
...|+++.|+..++.+++. .+.|+.......+.+.+.++..+|.+.|+.+.. |+ ...+-.+..+|.+.|++.+|+.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3556777777777776665 234666666667777777777777777776542 32 4555566667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 160 LFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 160 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+++..... .+-|+..|..|..+|...|+..++..-.. +.|...|++++|..++...
T Consensus 396 ~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 396 ILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA-------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHH
Confidence 77776655 35566677777777777776665544332 2345566777776666555
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0059 Score=58.29 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHH-HHhc-CChhHHHHHHHHHhcCCCCC-ChhHHHHHHHHHhccchhHHHHHHH
Q 043370 224 YLDEAAALIRNMPV-KANAIIWKTLLSA-CKTH-KSTDMAGRIAEEILGVNPQD-AAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 224 ~~~~A~~~~~~m~~-~p~~~~~~~ll~~-~~~~-~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
..+.+.++-...+. .|.. .+..++.. .... .....|..++....+..|.+ ......++......|+++.|.+++.
T Consensus 322 k~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33444444444432 3433 34444444 2222 24777888888888888865 4455666778899999999999999
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=2.6e-05 Score=62.02 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
.....+...+...|++++|...|+.. ...| +...|..+...+...|+++.|...+++..+.+|.++..+..+..+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44455556666666666666666665 3233 455566666666667777777777777766677666777777777777
Q ss_pred ccchhHHHHHHHHHHhC
Q 043370 288 AKRWQGVSEFREAMRER 304 (430)
Q Consensus 288 ~g~~~~a~~~~~~m~~~ 304 (430)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777665543
No 131
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.20 E-value=0.00091 Score=65.52 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVD 217 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 217 (430)
..|......+.+.+..++|...+.+.... .+-....|......+...|..++|.+.|.... -+.| ++...+++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 34666777888899999999888887765 24455666666677788899999999999876 4566 5678899999
Q ss_pred HHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh
Q 043370 218 LLGRCGYLDEAAA--LIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA 276 (430)
Q Consensus 218 ~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 276 (430)
++.+.|+..-|.+ ++..+ .+.| +...|..+...+.+.|+.+.|...|....++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998887777 88777 6666 7889999999999999999999999999988765543
No 132
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.17 E-value=0.0017 Score=57.76 Aligned_cols=263 Identities=13% Similarity=0.064 Sum_probs=188.0
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhH-HHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV-ISSLI 114 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li 114 (430)
++.-.--+-..+...|++..|+.-|....+-+ +.+-.++---...|...|....|..-+...++. +||-.. ..--.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444457778889999999999999887642 222334444456677788888888888888874 566432 23345
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCH----------------hHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043370 115 SMYSRCGCLDDSVKTFLECEYSDV----------------VLWS--SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176 (430)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~d~----------------~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 176 (430)
..+.+.|.++.|..-|+.+.+.++ ..|+ ..+..+.-.|+...|+.....+++. .+-|...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHH
Confidence 677899999999999988753211 1222 2344566689999999999999985 24466667
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH---------
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKT--------- 246 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~--------- 246 (430)
..-..+|...|.+..|+.=+....+- ...+....--+-..+-..|+.+.++..+++. .+.||....-.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 77778889999999998877776542 2335566667788888999999999999887 77787543211
Q ss_pred --HHHH--HHhcCChhHHHHHHHHHhcCCCC----CChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 247 --LLSA--CKTHKSTDMAGRIAEEILGVNPQ----DAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 247 --ll~~--~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
|-++ ....+++..+....+..++.+|. ....+..+..+|...|++.+|.+...+..+.
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 1122 45577888888888888888885 2335567788888999999999988877653
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=7.8e-05 Score=59.27 Aligned_cols=94 Identities=5% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 043370 73 ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYG 149 (430)
Q Consensus 73 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~ 149 (430)
.....+...+...|++++|.+.++.+.+.+ +.+...+..+...|.+.|++++|...|+... +.+...|..+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334445555555666666666666665543 2255555666666666666666666665532 234455555566666
Q ss_pred hcCChHHHHHHHHHHHHC
Q 043370 150 FHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~ 167 (430)
..|++++|+..|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666553
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.17 E-value=0.00012 Score=73.37 Aligned_cols=159 Identities=14% Similarity=0.036 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG-FRPDKITFVSVISSC 82 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~ 82 (430)
..|+.|...|....+...|.+.|+..-+ .|..++......|++..++++|..+.-..-+.. ...-...|....-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4788899999988889999999987654 467788999999999999999999843322211 111122333344455
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHH---HHHHHHhcCChHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSS---MIAAYGFHGKGEEAIN 159 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~---li~~~~~~g~~~~A~~ 159 (430)
...++...+..-|+...+..+. |...|..|+.+|.++|.+..|.++|.+...-++.+|.. ....-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 6778888888888888877544 88999999999999999999999998776444333322 2234456788888888
Q ss_pred HHHHHHH
Q 043370 160 LFEQMEQ 166 (430)
Q Consensus 160 ~~~~m~~ 166 (430)
.+.....
T Consensus 652 ~l~~ii~ 658 (1238)
T KOG1127|consen 652 ALGLIIY 658 (1238)
T ss_pred HHHHHHH
Confidence 8777654
No 135
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0024 Score=64.44 Aligned_cols=256 Identities=16% Similarity=0.179 Sum_probs=173.2
Q ss_pred cCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEV 98 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 98 (430)
-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+.+.|.+++-.+.+...
T Consensus 1088 i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 57788888888777765 45888888888899888888776433 26678888899999999998888888777
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-----------------------CCCHhHHHHHHHHHHhcCChH
Q 043370 99 VKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE-----------------------YSDVVLWSSMIAAYGFHGKGE 155 (430)
Q Consensus 99 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------------~~d~~~~~~li~~~~~~g~~~ 155 (430)
.+..-+|.+ -+.|+-+|++.+++.+-++.+..-. -.++.-|..|...+...|+++
T Consensus 1160 Rkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1160 RKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 766555543 4578888888888887766553211 014455777777888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 156 EAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.|.+.-++. .+..||..+-.+|...+.+..|. |..- ++.....-..-|+..|-..|-+++...+++..
T Consensus 1238 ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1238 GAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 888776553 25678888888888777665543 3211 23334556677899999999999999998876
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHh-cCC-C------CCChhHHHHHHHHHhccchhHHHHH
Q 043370 236 -PVK-ANAIIWKTLLSACKTHKSTDMAGRIAEEIL-GVN-P------QDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 236 -~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-p------~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
|.+ .....|+-|.-.|.+.. +++..+.++-.- +++ | .....|.-|.-.|.+-..|+.|.-.
T Consensus 1306 LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 543 24445555555555543 444444333322 222 2 1345677777777777777776543
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00075 Score=57.96 Aligned_cols=242 Identities=9% Similarity=0.011 Sum_probs=141.8
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 124 (430)
+-+.-.|++..++..-...... +-+...-.-+-++|...|++.... ..+.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3444556666665544333322 133444445556666666653322 2222222 333333333333333333333
Q ss_pred HHHH-HHhccCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 125 DSVK-TFLECEYS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 125 ~A~~-~~~~~~~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
+-.. +.+.+..+ +.+....-...|+..|++++|++..+... ..+.... =...+.+..+++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3222 22333222 22223333446788889999998887621 1222222 223345677888888888888
Q ss_pred hhhcCCccCHhHHHHHHHHHhh----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 200 VKKYRRKPRLEHYTCVVDLLGR----CGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 200 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+- .+..+.+.|..++.+ .+.+.+|.-+|++| +..|+..+.+-+..++...|++++|..+++.++..++.
T Consensus 164 q~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 642 244555556555543 46788899999998 35678888888888888899999999999999888888
Q ss_pred CChhHHHHHHHHHhccchhHH-HHHHHHHH
Q 043370 274 DAAPYVLLSNIHASAKRWQGV-SEFREAMR 302 (430)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 302 (430)
++.+...++-.-...|+-.++ .+.+..++
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 888888887777777766553 34444443
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.11 E-value=0.0049 Score=58.26 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKA-NAIIWKTLLSACKTHKSTDMAGRIAE 265 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 265 (430)
+....+++++.....+.|+. +|.+++..-.|..-+..|..+|.+. +..+ ++.++++++.-++ .++.+.|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 33444555554443444443 5667777777777788888888887 2334 6677777776655 466788888888
Q ss_pred HHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCC
Q 043370 266 EILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKE 309 (430)
Q Consensus 266 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 309 (430)
--+...++++..-...++-+.+.++-..+..+|++....++.++
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 88777776666666777778888888888888888877755443
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00036 Score=56.25 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH--hHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD---KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDV--GVISSL 113 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~l 113 (430)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....|+. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 445555554 3666777777777776652 222 122333445666677777777777777765532221 233445
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC--CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYS--DVVLWSSMIAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~ 163 (430)
...+...|++++|+..++....+ ....+......|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666677777777776654432 334445555666666777777666654
No 139
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0011 Score=66.67 Aligned_cols=242 Identities=15% Similarity=0.117 Sum_probs=169.6
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 91 (430)
+.......+-+++|..+|++... +...-+.||. .-+..+.|.+.-++.- .+..|+.+..+-.+.|...+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 44556677889999999987543 4555566665 3466777877655442 346799999999999999988
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLEC----EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 92 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
.+-|-+ . .|+..|...++...+.|.+++-.+.+.-. .+|.+ =+.||-+|++.++..+..++.
T Consensus 1124 ieSyik---a---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1124 IESYIK---A---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred HHHHHh---c---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh------
Confidence 876633 2 37778999999999999999999888643 34444 356899999999988766654
Q ss_pred CCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCC-----------
Q 043370 168 EFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP----------- 236 (430)
Q Consensus 168 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------- 236 (430)
..||......+..-|...+.++.|.-+|.... .|..|...+...|.+..|.+.-++..
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 35788888888888999999988888777653 34555555556666666555444432
Q ss_pred --------------CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 237 --------------VK--ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 237 --------------~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
.. -...-..-|+.-|...|-+++-+.+++..++++.-....|.-|.-.|++-
T Consensus 1259 Cvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 11 12223344666667777778777777777777655666676666666654
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00038 Score=59.24 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=96.5
Q ss_pred CCHHHHHHHHhccCC--------CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhhcCcHH
Q 043370 121 GCLDDSVKTFLECEY--------SDV-VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL-LYACSHCGLKE 190 (430)
Q Consensus 121 g~~~~A~~~~~~~~~--------~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~ 190 (430)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|+.+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 355666666655431 111 22333344445566666777777766554 2 333221111 11233456677
Q ss_pred HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 191 KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 191 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+|.++++.+..+ -+.|..++--=+-+.-..|+--+|.+-+... .+-.|...|.-+-..|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777776654 1234444544444444555555555554444 334466677777777777777777777777777
Q ss_pred cCCCCCChhHHHHHHHHHhccch---hHHHHHHHHHH
Q 043370 269 GVNPQDAAPYVLLSNIHASAKRW---QGVSEFREAMR 302 (430)
Q Consensus 269 ~~~p~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~ 302 (430)
=..|.++..+..+...+...|.. +-+.+.+.+-.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66776666666666666555433 33444444443
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.03 E-value=6.4e-06 Score=46.68 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEF 169 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 169 (430)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.01 E-value=5.7e-06 Score=46.92 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGF 68 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 68 (430)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00079 Score=54.23 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH--hHHHHHH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEAN---DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL--EHYTCVV 216 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li 216 (430)
..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|.. .....|.
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3344444 2555666666666665542 112 122223334555566666666666666543 211211 1233345
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 217 DLLGRCGYLDEAAALIRNMPVK-ANAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
..+...|++++|+..++..+.. .....+......+...|+.++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555566666666666554211 1233334444445555666665555554
No 144
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0065 Score=58.01 Aligned_cols=280 Identities=13% Similarity=0.103 Sum_probs=166.1
Q ss_pred HHHHHHHcCChHHHHHHHccC--------CCC--C---HH-----HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH
Q 043370 12 LAHMYMKSGSLVEGEKVIRLM--------PIR--N---VI-----AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI 73 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m--------~~~--~---~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 73 (430)
....+...|++.+|+++++.. ..- + .. .--.|.-.+-..|+.++|.+++...++.. .+|..
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~ 259 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEP 259 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCch
Confidence 345677789999999998876 111 1 11 12234455677899999999999988875 55653
Q ss_pred HHHHHHHHH---hccCChHH--HHHHHHHH-----------HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 043370 74 TFVSVISSC---SELATLGQ--GQQIHAEV-----------VKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD 137 (430)
Q Consensus 74 t~~~ll~~~---~~~g~~~~--a~~~~~~~-----------~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d 137 (430)
......+.+ ....++-. ....++.. ........+..-+.++.+|. +..+.+.+.-...+...
T Consensus 260 ~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 260 SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMS 337 (652)
T ss_pred HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccC
Confidence 333222221 11111111 11111111 00001112333355666665 44456666666665432
Q ss_pred -HhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhhcCcHHHHHHHHH--------HHhhhcC
Q 043370 138 -VVLWSSMIAAYG--FHGKGEEAINLFEQMEQKEFEAND--VTFVSLLYACSHCGLKEKGMEFFD--------LMVKKYR 204 (430)
Q Consensus 138 -~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~ 204 (430)
...+.+++.... +...+..|.+++...-+. .|+. ......+......|+++.|.+++. .+.+- +
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~ 414 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-K 414 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-c
Confidence 233444443332 223577888888777654 3443 344455556678999999999998 44432 3
Q ss_pred CccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 205 RKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--------PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 205 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
.. +.+-..++..|.+.++-+.|..++.+. .-.+. ..+|.-+..--.++|+.++|..+++++.+.+|++.
T Consensus 415 ~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 415 HL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred cC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 33 345567888888888766666666554 11221 22333333344567999999999999999999999
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHH
Q 043370 276 APYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
.+...++.+|+.. +.+.|..+-+.
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999876 46666665443
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00021 Score=55.22 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSA 250 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 250 (430)
..+...+...|++++|...|..+.+.+.-.+ ....+..+..++.+.|++++|...++.+ ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444455555555555555543311101 1233444555555555555555555544 21222 3344555555
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 251 CKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
+...|+.+.|...++++.+..|+++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666654443
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00015 Score=52.84 Aligned_cols=92 Identities=21% Similarity=0.151 Sum_probs=66.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc
Q 043370 212 YTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK 289 (430)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 289 (430)
+..+...+...|++++|...+++. ...| +...+..+...+...++++.|...+++.....|.+..++..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777777777777765 3333 33556666667777788888888888888777777777778888888888
Q ss_pred chhHHHHHHHHHHh
Q 043370 290 RWQGVSEFREAMRE 303 (430)
Q Consensus 290 ~~~~a~~~~~~m~~ 303 (430)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776654
No 147
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0042 Score=55.60 Aligned_cols=291 Identities=12% Similarity=0.073 Sum_probs=169.7
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCC---------------CHHHH--------------HHHHHHHHHCCChh
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIR---------------NVIAW--------------ITLIAGKAQNGLAE 54 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------------~~~~~--------------~~li~~~~~~g~~~ 54 (430)
|+..++-.|...+.-.|.+.+|..+-.+.++. |..-| -+|.+..-..-.+.
T Consensus 89 ~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 89 APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Confidence 44455555666666677888888776665531 11111 12222222334578
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh--cCCHHHH--HHH
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISS-CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR--CGCLDDS--VKT 129 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A--~~~ 129 (430)
+|++++.+.+.. .|+-...+.-+.. |.+..-++.+.+++.--++. ++.++...|....-..+ .|+..++ ..+
T Consensus 169 eAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 169 EAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 888888888875 4566666654444 45666677777777665554 23233333333222221 1221111 111
Q ss_pred HhccC-------------------------------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043370 130 FLECE-------------------------------YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178 (430)
Q Consensus 130 ~~~~~-------------------------------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 178 (430)
-+... +.=+.+--.|+--|.+.++.++|..+.+++.- ..|-......
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKg 323 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKG 323 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHH
Confidence 11111 11122333456678889999999998877642 2444433333
Q ss_pred HHHHh-----hhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC-CHHHHHHHHH
Q 043370 179 LLYAC-----SHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNMP--VKA-NAIIWKTLLS 249 (430)
Q Consensus 179 ll~a~-----~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p-~~~~~~~ll~ 249 (430)
+..+- .....+.-|.+.|+..-.. +..-| ..-..++...+.-..++|+.+..++.+. +.. |...+ .+..
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQ 401 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQ 401 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHH
Confidence 33322 1122345567777665443 43333 3345567777777788999988888772 222 34444 4778
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHH-HHHHHHHhccchhHHHHHHHHH
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYV-LLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+.+..|++.+|+++|-++.+.+-.|..+|. .|.++|.+.++.+-|+.++-++
T Consensus 402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 899999999999999988776644666665 5678889999999998887655
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.84 E-value=0.00089 Score=53.46 Aligned_cols=103 Identities=6% Similarity=-0.019 Sum_probs=69.4
Q ss_pred HHccCC-CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 043370 28 VIRLMP-IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD 106 (430)
Q Consensus 28 ~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 106 (430)
.+..+. ..+....-.+..-+.+.|++++|.++|+.+.... +-+..-|-.|..+|-..|++++|...|.......+ .|
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CC
Confidence 333444 4444455556666677788888888887777653 33455566666677777788888888877777654 36
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhc
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~ 132 (430)
+..+-.+..+|.+.|+.+.|++.|+.
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777777777777777777777765
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.80 E-value=0.02 Score=57.47 Aligned_cols=222 Identities=13% Similarity=0.112 Sum_probs=125.5
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS--CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 125 (430)
...+++.+|++...++++. .||.. |..++.+ ..+.|..++|..+++.....+.. |..+...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3556777777777777664 34432 2233333 34677777777666655544433 67777777777777777777
Q ss_pred HHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC----------cHHHHH
Q 043370 126 SVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG----------LKEKGM 193 (430)
Q Consensus 126 A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------~~~~a~ 193 (430)
|..+|+.... |+......+..+|.+.+.+.+-.+.--+|-+. ++-+...|-++++.....- .+.-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 7777777653 33333444555666666554443333333332 3444555555555544321 133456
Q ss_pred HHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHh-C-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 194 EFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRN-M-PVKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
+.++.+.+..|..-+..-...-...+...|++++|.+++.. . ...+ +...-+.-+..+...+++.+-.++..+++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 66666666533111222222223344566778888888732 2 1112 333334455557777788888888888877
Q ss_pred CCCCC
Q 043370 270 VNPQD 274 (430)
Q Consensus 270 ~~p~~ 274 (430)
.+++|
T Consensus 255 k~~Dd 259 (932)
T KOG2053|consen 255 KGNDD 259 (932)
T ss_pred hCCcc
Confidence 77755
No 150
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.78 E-value=0.0055 Score=61.96 Aligned_cols=176 Identities=11% Similarity=-0.003 Sum_probs=108.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHH--HHHHHH
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-NDV--TFVSLL 180 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~--t~~~ll 180 (430)
...|..|...|...-+...|.+.|+..- ..|..++......|++..++++|..+.-..-+. .| -.. .|....
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhcc
Confidence 4567777788877777778888887644 346677777888888888888888772222111 11 111 122233
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCh
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSA-CKTHKST 257 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~~~~ 257 (430)
-.|...++...+...|+...+ +.| |...|..+.++|.++|++..|.++|.+. ..+|+...-.-.... -+..|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 345667777777777777653 344 6777888888888888888888888777 445543322222222 5667788
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 258 DMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
.+|...+..+..........-+.|...+.+
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 888887777764333222233344444443
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00041 Score=53.52 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=80.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHH
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLL 281 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 281 (430)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788889999999999999988 33343 3456668888999999999999999999888754 5678889
Q ss_pred HHHHHhccchhHHHHHHHHHHhCC
Q 043370 282 SNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 282 ~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..++...|++++|...++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0022 Score=62.81 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
..|..+.-.....|++++|...+++. ..+|+...|..+...+...|+.++|...+++...++|
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33444433333344444444444444 3334444444444444444455555554444444444
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=3.3e-05 Score=55.75 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANA-IIWKTLLSACKTHKSTDMAGRIAE 265 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 265 (430)
|+++.|..+++++.+.....|+...+..+..+|.+.|++++|..++++.+..|+. ...-.+..++.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4555555555555543111112223333455555555555555555443222221 222222333444555555555444
No 154
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0068 Score=57.23 Aligned_cols=249 Identities=12% Similarity=0.065 Sum_probs=157.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc------HhHHHHH
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD------VGVISSL 113 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~l 113 (430)
...+..+.-+..++..|++-+....+.. -+..-++....++...|.+.++...-...++.|-..- ......+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456677777788888888888887754 3444456666777788877777766666655543310 1112224
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 192 (430)
.+.|.+.++++.|+..|.+...+... -....+....++++.......-. .|... -...=.+.+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHH
Confidence 45677778888888888774321000 11122233455555555554432 33331 122235667788999999
Q ss_pred HHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 043370 193 MEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 270 (430)
...|.++++. .+-|...|....-+|.+.|.+..|++=.+.. ...|+ ...|..=..++.-..+++.|.+.|++.++.
T Consensus 378 v~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998875 3457788999999999999998888765554 34453 445655556667778899999999999999
Q ss_pred CCCCChhHHHHHHHHHhccchhHHHHHHH
Q 043370 271 NPQDAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 271 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+|.+...-..+.+++........-.++.+
T Consensus 456 dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred CchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 99776666555555554333333333333
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00039 Score=50.54 Aligned_cols=91 Identities=9% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3344455555555566665555555432 223344444455555555555555555555444322 23344444444444
Q ss_pred cCCHHHHHHHHhc
Q 043370 120 CGCLDDSVKTFLE 132 (430)
Q Consensus 120 ~g~~~~A~~~~~~ 132 (430)
.|+.++|...|..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4554444444443
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.03 Score=51.27 Aligned_cols=111 Identities=11% Similarity=0.135 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKT 253 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 253 (430)
.+.+..+.-|...|....|.++-.+. ++ |+..-|-..+.+|+..++|++-.++... +-++.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555666777788887777665444 44 7888899999999999999998887654 2356889999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999998888771 2255677889999999987765443
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00067 Score=50.33 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCcHhH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGF-RPDKITFVSVISSCSELA--------TLGQGQQIHAEVVKAGASLDVGV 109 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~ 109 (430)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667778888999999999999999999 899999999999887653 23456788999999999999999
Q ss_pred HHHHHHHHHh
Q 043370 110 ISSLISMYSR 119 (430)
Q Consensus 110 ~~~li~~~~~ 119 (430)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0019 Score=53.78 Aligned_cols=131 Identities=8% Similarity=0.099 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD--KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
....|..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+.+.++... .+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 456778888888899999999999999886542222 35677888888899999999999998887643 256677777
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 188 (430)
..+|...|+...+..-++.. ...+++|.+.+++.... .|+. +..++..+...|.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 88888877766554333221 11256777777777664 3443 5555555544443
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0025 Score=58.18 Aligned_cols=258 Identities=10% Similarity=-0.007 Sum_probs=161.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
..-..+.+..++.+|+..+....+.. +-+..-|..-+..+...+.++.+.--.++-++.... ......-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34445667777888888888888764 333444555555556666666665544444332111 1222333334444444
Q ss_pred CHHHHHHHHhcc---------------C-----CCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 122 CLDDSVKTFLEC---------------E-----YSDVVLWSSM-IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180 (430)
Q Consensus 122 ~~~~A~~~~~~~---------------~-----~~d~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 180 (430)
+..+|...|+.- . +|-..+|-.+ ..++...|++++|.+.-...++.. ..+......-.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg 210 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcc
Confidence 444444443321 1 1122333332 235667889999988887776653 12222222122
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccCHhH-------------HHHHHHHHhhcCCHHHHHHHHHhC-CCC-----CCH
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRLEH-------------YTCVVDLLGRCGYLDEAAALIRNM-PVK-----ANA 241 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~ 241 (430)
.++-..++.+.|...|++.+ ...|+-.. +.--..-..+.|.+.+|.+.+.+. .+. |++
T Consensus 211 ~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred cccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 23445678889999988876 34554322 111223345789999999999887 444 556
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..|........+.|+.++|+.--++...++|.-...|..-.+++...++|++|.+-++...+..
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677777778899999999999999999999778888888899999999999999988776543
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0024 Score=57.58 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS-CSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888888888888887543 2233444433333 23346777789999888876 56678888888888
Q ss_pred HHhcCCHHHHHHHHhccCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 117 YSRCGCLDDSVKTFLECEYS------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+.+.|+.+.|+.+|+..... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999876532 3357888888888888888888888888774
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=0.00019 Score=49.44 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc-chhHHHHHHHHHHh
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK-RWQGVSEFREAMRE 303 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 303 (430)
++.+|..+...+...|+++.|+..|++.++.+|.++..|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56778888888999999999999999999999999999999999999999 79999998887654
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.00044 Score=64.66 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=85.9
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKS 256 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 256 (430)
-...+...|++++|...|.++++. .+.+...|..+..+|.+.|++++|...++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999864 2336678888999999999999999999988 5556 57778888888999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 257 TDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
++.|...+++.++++|.++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999887766665444
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.0013 Score=61.50 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=81.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcC
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCG 223 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 223 (430)
...+...|++++|+++|++.++.. +-+...|..+..++...|++++|...++.+.+. .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 456677899999999999999864 445677888889999999999999999999853 44 6678889999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043370 224 YLDEAAALIRNM-PVKANAIIWKTLL 248 (430)
Q Consensus 224 ~~~~A~~~~~~m-~~~p~~~~~~~ll 248 (430)
++++|...|++. ...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999987 5566544444443
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0011 Score=55.18 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...+++..+..|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666666666666655 22221 34566666667777777777777777777777777777777777
Q ss_pred HHhccc
Q 043370 285 HASAKR 290 (430)
Q Consensus 285 ~~~~g~ 290 (430)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 766665
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.58 E-value=0.0013 Score=48.78 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhhcC--------cHHHHHHHHHHHhhhcCCccCHh
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EANDVTFVSLLYACSHCG--------LKEKGMEFFDLMVKKYRRKPRLE 210 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 210 (430)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566666677999999999999999999 899999999998876543 344567788888876 7888888
Q ss_pred HHHHHHHHHhh
Q 043370 211 HYTCVVDLLGR 221 (430)
Q Consensus 211 ~~~~li~~~~~ 221 (430)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0031 Score=56.90 Aligned_cols=132 Identities=13% Similarity=0.213 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA-CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467778888888888888888888887543 2233444433333 333566777999999888753 456677888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888889999999999887 22333 348999999888999999999999998887774
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00015 Score=52.21 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGF-RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
+|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455555555555554321 01222333344555555555555555544 222111 22333333444555555555555
Q ss_pred HHh
Q 043370 129 TFL 131 (430)
Q Consensus 129 ~~~ 131 (430)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 168
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.006 Score=52.43 Aligned_cols=167 Identities=11% Similarity=0.033 Sum_probs=104.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCC--CH--------HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPIR--NV--------IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
+++|+..+.-..-+++-...|+.-..| .+ ..-++++..+.-.|.+.-.+.++++.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455555555555555555555543322 22 33456666666677788888888888776655667777777
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHh
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLD-----VGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGF 150 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~ 150 (430)
.+.-.+.|+.+.|...|+...+..-..| .-+.-.....|.-.+++.+|...|+++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 7777888888888888886655432222 33333344456666777778888877653 355666655555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
.|+..+|++.++.|++. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 67888888888888775 34444333
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.54 E-value=0.00093 Score=55.95 Aligned_cols=99 Identities=11% Similarity=0.142 Sum_probs=80.1
Q ss_pred HHHHHHccC--CCCCHHHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------
Q 043370 24 EGEKVIRLM--PIRNVIAWITLIAGKAQN-----GLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL----------- 85 (430)
Q Consensus 24 ~A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 85 (430)
.-...|++. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345667776 567889999999998865 66777778889999999999999999999977432
Q ss_pred -----CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 86 -----ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 86 -----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
.+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3456688899999999999999999999888877664
No 170
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.54 E-value=0.023 Score=53.95 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHH
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKAGASL-DVGVISSLISMYSRCGCLDDSVKTFLECEY--S-DVVLWSSMIAAYG 149 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~~~~~~li~~~~ 149 (430)
+|...++..-+..-++.|+.+|.++.+.+..+ ++.+.++++.-|| .++.+-|.++|+--.+ + ++.--+..+.-+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34444444444444555555555555544444 4455555555544 3444555555543221 1 2222233444444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 150 FHGKGEEAINLFEQMEQKEFEAND--VTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
..++-..|..+|++....++.||. ..|..+|..=+.-|++..+.++-+++.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 445555555555555544444432 345555555455555555554444443
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.53 E-value=0.055 Score=47.65 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHhccCChHHHHHHHHHHHHcCC
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK-ITF---VSVISSCSELATLGQGQQIHAEVVKAGA 103 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 103 (430)
.+...+-.....+.+.|++++|.+.|+++... -|+. ..- ..+..++.+.+++++|...+++.++..+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34444444556667788888888888888775 3333 222 3455677788888888888888877643
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.0012 Score=54.71 Aligned_cols=94 Identities=11% Similarity=-0.078 Sum_probs=72.0
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|+.++|...+++...+.|....++..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777777888888888888876 23232 347788888899999999999999999999888888888888
Q ss_pred HHHH-------hccchhHHHHHHHHH
Q 043370 283 NIHA-------SAKRWQGVSEFREAM 301 (430)
Q Consensus 283 ~~~~-------~~g~~~~a~~~~~~m 301 (430)
..|. ..|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 777877666655543
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00034 Score=47.52 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=43.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
...+...|+++.|...++++++..|.++..+..+..++...|++++|...+++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888888888888888888888888877543
No 174
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0038 Score=58.85 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhH
Q 043370 67 GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA--GASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDVVL 140 (430)
Q Consensus 67 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~ 140 (430)
+.+.+......+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=. =||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667778888888888888888888887777654 222234455689999999999999999987633 378899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 186 (430)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988887777888887777777665
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.0011 Score=58.14 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=64.2
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~ 259 (430)
..+.+++++|...|.+.++ +.| +..-|..-..+|.+.|.++.|.+-.+.. .+.|+ ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456677777777777663 344 4455555677777777777776655554 55553 5677777777888888888
Q ss_pred HHHHHHHHhcCCCCCChhHHHH
Q 043370 260 AGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l 281 (430)
|.+.|++.++++|+|......|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888666444443
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0041 Score=51.46 Aligned_cols=81 Identities=5% Similarity=0.043 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP--DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4566777777778888888888888877543222 12467777777777888888888887777653 22344555555
Q ss_pred HHHH
Q 043370 115 SMYS 118 (430)
Q Consensus 115 ~~~~ 118 (430)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.0011 Score=60.25 Aligned_cols=256 Identities=13% Similarity=0.077 Sum_probs=164.7
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHH--Hc--CCC-CcHhHHHHHHHH
Q 043370 46 GKAQNGLAEDVLDQYNLMRMVGFRPDK----ITFVSVISSCSELATLGQGQQIHAEVV--KA--GAS-LDVGVISSLISM 116 (430)
Q Consensus 46 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~ 116 (430)
-+++.|+....+.+|+..++.| .-|. ..|..|.++|.-.+++++|.++|..=+ .. |-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3789999999999999999887 3343 346667788888899999999876421 11 100 012223345555
Q ss_pred HHhcCCHHHHHHHHh-cc------CCC--CHhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH--
Q 043370 117 YSRCGCLDDSVKTFL-EC------EYS--DVVLWSSMIAAYGFHGK--------------------GEEAINLFEQME-- 165 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~-~~------~~~--d~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 165 (430)
+--.|.+++|.-.-. .+ -.+ ....+..+...|...|+ ++.|.++|.+=+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555666666654321 11 111 22344455666655442 234444444321
Q ss_pred --HCCCC-CCHHHHHHHHHHhhhcCcHHHHHHHHHH---HhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 043370 166 --QKEFE-ANDVTFVSLLYACSHCGLKEKGMEFFDL---MVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM--- 235 (430)
Q Consensus 166 --~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 235 (430)
+.|-. .-...|..|.+.|.-.|+++.|...++. +.+++|-.. ....+..+..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11110 1123566677777778999999887765 334455443 3467888899999999999998887754
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHh----cCC--CCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 236 ----PVK-ANAIIWKTLLSACKTHKSTDMAGRIAEEIL----GVN--PQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 236 ----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
+.+ ....+.-+|...|....+++.|+.++.+-+ +++ .....++.+|.++|...|..++|..+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 322 245567778888888899999999887754 222 2356789999999999999999988766543
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.44 E-value=0.0053 Score=47.18 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=58.4
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CcHhHHHHHHHHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPD--KITFVSVISSCSELATLGQGQQIHAEVVKAGAS--LDVGVISSLISMYS 118 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~ 118 (430)
+..++-..|+.++|+.+|++....|+... ...+..+.+.+-..|++++|..+++........ .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777777665443 234555666667777777777777776654211 02222233334555
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHH
Q 043370 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAA 147 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~ 147 (430)
..|+.++|.+.+-....++...|.--|..
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665544333333333333333
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.022 Score=51.59 Aligned_cols=61 Identities=5% Similarity=-0.045 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRPD-KITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
..|+.....|-..|++++|.+.|.+.... +-+.+ ...|......+ +..++++|.+.+++..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Confidence 35666777788888888888888776431 11111 12233333333 3336666666655543
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00039 Score=47.22 Aligned_cols=60 Identities=23% Similarity=0.209 Sum_probs=42.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 215 VVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345666777777777777776 4445 45667777777778888888888888888777754
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.021 Score=51.64 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=61.3
Q ss_pred HHHHHHHhhhc-CcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-----CCHH
Q 043370 176 FVSLLYACSHC-GLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAALIRNMP---VK-----ANAI 242 (430)
Q Consensus 176 ~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p~~~ 242 (430)
+..+...|... |++++|.+.|++..+-+..... ..++..+...+.+.|++++|.++|++.. .. .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444556666 7888888888887654322222 3456777888899999999999998761 11 1222
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 243 -IWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 243 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+-..+-.+...|++..|.+.+++....+|.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1222233466678999999999999888874
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0086 Score=56.53 Aligned_cols=122 Identities=9% Similarity=0.015 Sum_probs=97.3
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCc-cCHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHH
Q 043370 167 KEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK-PRLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAI 242 (430)
Q Consensus 167 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~ 242 (430)
.+.+.+......+++.+....+++++..++.+........ .-..+..++|+.|...|..+++..+++.= |+=||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456678888889999999999999999988886541111 11234459999999999999999999864 8889999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCC-CCCChhHHHHHHHHHhc
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVN-PQDAAPYVLLSNIHASA 288 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 288 (430)
+++.|+..+.+.|++..|.+++..|...+ ..++.++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999887443 45777877767666655
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.00064 Score=59.48 Aligned_cols=86 Identities=16% Similarity=0.119 Sum_probs=76.2
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
-+.+.+++.+|...|.+. .+.| |.+.|..=..+|.+.|.++.|.+-.+..+.++|....+|..|..+|...|++++|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 356789999999999987 7777 66777777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 043370 296 EFREAMRE 303 (430)
Q Consensus 296 ~~~~~m~~ 303 (430)
+.|++-.+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 99886543
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.087 Score=48.28 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 191 (430)
.-+.-+...|+...|.++-.+..-||-.-|-..+.+++..++|++-.++... +-.+.-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3345556677777777777777777777777778888888877766654332 1123557777777777777777
Q ss_pred HHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 192 GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 192 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
|..+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777766531 134567777777777776654443
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0035 Score=52.61 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=71.6
Q ss_pred HHHHhcc--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc-------------
Q 043370 127 VKTFLEC--EYSDVVLWSSMIAAYGF-----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC------------- 186 (430)
Q Consensus 127 ~~~~~~~--~~~d~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 186 (430)
...|+.. ..+|-.+|..++..|.+ .|+.+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677777777777764 467777888888888999999999999998887542
Q ss_pred ---CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 187 ---GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 187 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
.+-+-|.+++++|... |+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2345678888888654 888888888888888877664
No 186
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.33 E-value=0.13 Score=47.18 Aligned_cols=242 Identities=14% Similarity=0.096 Sum_probs=121.9
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
-.|+++.|.+-|+.|...- .....-...|.-..-+.|+.+.|.+.-+..-..-.. -.....+.+...+..|+++.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHH
Confidence 3456666666666665310 000111122222223455555555555544433211 23444555666666666666666
Q ss_pred HHhccC-----CCCHh--HHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhhcCcHHHHHHHHH
Q 043370 129 TFLECE-----YSDVV--LWSSMIAAYG---FHGKGEEAINLFEQMEQKEFEANDVT-FVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 129 ~~~~~~-----~~d~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
+.+.-. ++|+. .-..|+.+-. -.-+...|.+.-.+..+ +.||-+- -.....++.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 665422 23321 1111222111 12234444444433333 3455332 2233456677777777777777
Q ss_pred HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 198 LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 198 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.+-+. .|....+.. ..+.+.|+.. .+-+++. .++| |..+--++..+....|++..|..-.+......|
T Consensus 288 ~aWK~---ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAWKA---EPHPDIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHhc---CCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 77653 444443322 2234445422 2222221 2344 455556666677778888888888777777777
Q ss_pred CCChhHHHHHHHHH-hccchhHHHHHHHHHH
Q 043370 273 QDAAPYVLLSNIHA-SAKRWQGVSEFREAMR 302 (430)
Q Consensus 273 ~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 302 (430)
....|..|.+.-. ..|+-.++...+.+-.
T Consensus 361 -res~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 361 -RESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred -hhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 6677777777664 4477777777666544
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.023 Score=55.77 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
..|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344443333344555555555555542 2344555555555555555555555555443
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.00032 Score=48.10 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=36.4
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 252 KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...|+++.|...++++...+|.+...+..++.+|.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777777777766543
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.27 E-value=0.059 Score=44.11 Aligned_cols=133 Identities=8% Similarity=-0.020 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHHHH
Q 043370 169 FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP-VKA---NAIIW 244 (430)
Q Consensus 169 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 244 (430)
..|+...-..|..+....|+..+|...|++.... -..-|......+.++....+++.+|...++++. -.| ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666677788888888888888888887652 234466677777777778888888888887762 111 22233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 245 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
-.+...+...|+...|+..|+.....-| ++..-......+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3455668888999999999999888777 566656666777888888877766555543
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.25 E-value=0.04 Score=48.51 Aligned_cols=180 Identities=9% Similarity=0.021 Sum_probs=106.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-HhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEY--SD-VVL---WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
+....-.....+.+.|++++|.+.|+++.. |+ ... .-.++.+|.+.+++++|...|++..+.-..-...-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 344444456666778888888888888753 22 222 234566778888888888888888775211112233333
Q ss_pred HHHhhh--cC---------------c---HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043370 180 LYACSH--CG---------------L---KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239 (430)
Q Consensus 180 l~a~~~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 239 (430)
+.+.+. .+ + ..+|...|+.+++ -|-.+.-..+|..-+..+..+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH
Confidence 333321 10 1 1233344444443 3333334444544443332110
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC---CChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ---DAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
-..-+ .+..-|.+.|.+..|..-++.+++.-|. .+.+...+..+|...|..++|..+...+.
T Consensus 175 a~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01111 2334488899999999999999987775 44566788899999999999998887654
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.24 E-value=0.066 Score=43.80 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=70.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHH
Q 043370 104 SLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE---FEANDVTF 176 (430)
Q Consensus 104 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 176 (430)
.|+......|.+...+.|+..+|...|++.. ..|....-.+.++....+++.+|..+++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4555555666666666666666666666543 2355555555666666666777777766665542 2233 23
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
..+..++...|...+|..-|+....- -|+...-.-....+.+.|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 34455666666676677666666543 3454444444455566666555443
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0068 Score=53.44 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=84.3
Q ss_pred ccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHHHHHHHHhcCCCCCChhHHH
Q 043370 206 KPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT---HKSTDMAGRIAEEILGVNPQDAAPYVL 280 (430)
Q Consensus 206 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 280 (430)
+-|.+.|-.|...|.+.|+++.|..-|.+. .+.| |...+..+..++.. .....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 458899999999999999999999999887 3443 56666666666322 235678899999999999999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 281 LSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 281 l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
|...+...|++.+|...|+.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987653
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.23 E-value=0.3 Score=49.52 Aligned_cols=212 Identities=13% Similarity=0.130 Sum_probs=139.8
Q ss_pred HcCChHHHHHHHccCCC--CCHHHHHHHHHH--HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043370 18 KSGSLVEGEKVIRLMPI--RNVIAWITLIAG--KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQ 93 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~--~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 93 (430)
..+++..|....+++.+ ||. .|...+.+ ..+.|+.++|..+++.....+.. |..|...+-..|-..++.+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45778888877776653 443 34444444 46889999999998888766533 88899999999999999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHhccCCCCHhHHHHHHHHHHhc-CC---------hHHHHH
Q 043370 94 IHAEVVKAGASLDVGVISSLISMYSRCGCLDD----SVKTFLECEYSDVVLWSSMIAAYGFH-GK---------GEEAIN 159 (430)
Q Consensus 94 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~d~~~~~~li~~~~~~-g~---------~~~A~~ 159 (430)
+|++.... -|+......+..+|.+.+++.+ |.++++..++.--..|+. ++.+.+. .. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHH
Confidence 99999875 4567788888889999887754 666777666555455553 3333332 11 224555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHH-HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 160 LFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFD-LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 160 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.++.+.+.+-+. +..-...-+......|..++|.+++. ...+. -...+...-+--++.+...+++.+..++-.++
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 666666554122 12222222334567888999999984 33332 22223344456678888889988877766555
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.036 Score=53.68 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=150.5
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC-----------CCCHHHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCC
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP-----------IRNVIAWITLIAGKAQNGL--AEDVLDQYNLMRMVGFRP 70 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 70 (430)
|..+.+++=+.-|...|.+++|.++=---. .-+...++.-=.+|.+-.+ +-+.+.-+++|++.|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334445566677888888888876521111 1123344445566665544 445556677888888778
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-------CHhHH--
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-------DVVLW-- 141 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------d~~~~-- 141 (430)
+.... ...|+-.|.+.+|.++|.+ .|.+ |.-+.+|.....+|.|.++....... .-..|
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 87653 4556778899999988854 5544 34567777777777777777543210 01111
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHH------HHHCCCC---CCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc
Q 043370 142 -----SSMIAAYGFHGKGEEAINLFEQ------MEQKEFE---ANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP 207 (430)
Q Consensus 142 -----~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 207 (430)
.+....+...|+.++|..+.-+ +.+.+-+ .+..+...+...+-+...+..|-++|.+|-+.
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----- 776 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----- 776 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence 1223344555666666554321 1111112 23345555555556677788888899888432
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHH-----------HHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNMP-VKANAII-----------WKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-----------~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
..++++....+++++|..+-++.| +.||+.. +.-.-.+|.+.|+-.+|.++++++.
T Consensus 777 -----ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 777 -----KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred -----HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 457888999999999999999984 3444332 2234456888999999999999886
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.0015 Score=45.40 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..|...++++.|.+++++++.++|.++..+.....++...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457778888888888888888888888888888888888888888888888876543
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.12 E-value=0.017 Score=44.40 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=64.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHh
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKEFEAN--DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLG 220 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 220 (430)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677778999999999999988876654 34566777888889999999999988876532111 1222233344667
Q ss_pred hcCCHHHHHHHHHh
Q 043370 221 RCGYLDEAAALIRN 234 (430)
Q Consensus 221 ~~g~~~~A~~~~~~ 234 (430)
..|+.++|...+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888877654
No 197
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.12 E-value=0.067 Score=49.56 Aligned_cols=160 Identities=17% Similarity=0.075 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYS---D----VVLWSSMIAAYGF---HGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~---d----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
...|+-.|....+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.+++.||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 335555688888888888888887643 1 1111223445556 78888888888886655567777777776
Q ss_pred HHHhhh---------cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHH----HHHHHH---HhC----C---
Q 043370 180 LYACSH---------CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLD----EAAALI---RNM----P--- 236 (430)
Q Consensus 180 l~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~--- 236 (430)
...|-. ...+++|...|.+.- .+.|+..+--.++-.+...|.-. +..++- ..+ +
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 665532 223566666666542 44555444333333343333311 111111 110 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 237 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
-..|--.+.+++.++.-.|+.+.|.+..+++..+.|
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 112333445666666677777777777777766655
No 198
>PRK15331 chaperone protein SicA; Provisional
Probab=97.08 E-value=0.0038 Score=50.15 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=74.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHH
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 294 (430)
--+-..|++++|..+|+-+ -..| |..-|..|...+...++++.|...|.....++++|+..+.....+|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3345789999999999877 2223 5667888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 043370 295 SEFREAMRE 303 (430)
Q Consensus 295 ~~~~~~m~~ 303 (430)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998755
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.03 E-value=0.0035 Score=43.00 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHc
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKA 101 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~ 101 (430)
+...|..+...+.+.|++++|+..|.+.++.. +-+...|..+..++...| ++++|.+.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35567777777777777777777777776653 334556666666677776 577777777766653
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.00 E-value=0.0038 Score=42.63 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=21.4
Q ss_pred cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555544432 1113344444445555555555555555444
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.3 Score=48.46 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043370 170 EANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLS 249 (430)
Q Consensus 170 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 249 (430)
.-...|.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+... .+.-|.-+..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3445566666777888899999988876653 4788888888999999999999999888764 3566778899
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+|.+.|+.++|.+++.+..++. -...+|.+.|++.+|.+.--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999887643221 567889999999998877544
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.25 Score=42.84 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC-hHHH-HHHHHHHHH-cCCCCcHhHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC-SELAT-LGQG-QQIHAEVVK-AGASLDVGVISS 112 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~-~~~a-~~~~~~~~~-~g~~~~~~~~~~ 112 (430)
...|+.-+.++++...+++|..-+.-.-+.+ .||-+ |-.-=..+ .+.|. +.=+ +-+|.++.. .|.+ +++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnp-----qes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNP-----QES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCc-----HHH
Confidence 4556666777777777777766555544332 22211 00000000 11121 1112 233444433 2222 556
Q ss_pred HHHHHHhcCCHHHHHHHHhccC--CCCHh--------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 113 LISMYSRCGCLDDSVKTFLECE--YSDVV--------LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~--~~d~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
|...|.-..-+++-...|+.-. +..+. .-+.++..+.-.|.+.-.+.++++..+..-+-++.....|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 6666655555555555554322 22233 3355666677778888899999999887656677778888888
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHH-----HHHHhhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcC
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCV-----VDLLGRCGYLDEAAALIRNMPVK-A-NAIIWKTLLSACKTHK 255 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~ll~~~~~~~ 255 (430)
-.+.|+.+.|..+|+...+. .-..+..+.+.+ ...|.-++++.+|...+.+++.. | |+..-|.-.-...-.|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88999999999999977665 223333333333 33455667888888888887432 2 3444443333344568
Q ss_pred ChhHHHHHHHHHhcCCCC
Q 043370 256 STDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~ 273 (430)
+..+|.+..+.+.+..|.
T Consensus 301 ~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHhccCCc
Confidence 888899999999888884
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.85 E-value=0.0097 Score=52.88 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLLS 282 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 282 (430)
.|..-+..+.+.|++++|...|+.+ ...|+ ...+-.+...|...|+++.|...|+.+....|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666555 22232 1344445555666666666666666666555543 33444455
Q ss_pred HHHHhccchhHHHHHHHHHHh
Q 043370 283 NIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.++...|++++|..+++.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 566666666666666666654
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.83 E-value=0.026 Score=45.40 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH-----hCCCCCCC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR-----ERNVKKEP 310 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 310 (430)
.....++..+...|+++.|...++.+...+|.+...|..++.+|...|+..+|.++|+.+. +.|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 3455677778899999999999999999999999999999999999999999999999875 35666554
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.79 E-value=0.023 Score=44.20 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 169 FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 169 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
..|+..+..+++.+|+..|++..|.++.+.+.+.|+++.+...|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45666666666666666666666666666666666655555566555543
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.67 E-value=0.0067 Score=42.07 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=44.8
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
..|.+.+++++|.++++.+ ...| +...|......+...|+++.|...+++..+..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4677778888888888877 4445 45566667677888888888888888888888855443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.65 E-value=0.044 Score=48.73 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKA-NAIIWKTLL 248 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll 248 (430)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555777777777777765532111 1235556677777777777777777766 2211 233444455
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
..+...|+.+.|...++++.+..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 557778888888888888888888543
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=0.34 Score=47.81 Aligned_cols=129 Identities=10% Similarity=0.028 Sum_probs=71.6
Q ss_pred ChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH-CCCCC--------CHHHHHHHHHHHhccCChHHH
Q 043370 21 SLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRM-VGFRP--------DKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 21 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p--------~~~t~~~ll~~~~~~g~~~~a 91 (430)
.+++|.+..+.- |.+..|..|...-.+.-.++.|...|-+... .|++. +...-.+=+. +-.|.+++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 356666666654 4456787777666666666666666655432 12211 0001111122 234788888
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHhHHHHHHHHHHhcCChHHHHHHHH
Q 043370 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-----DVVLWSSMIAAYGFHGKGEEAINLFE 162 (430)
Q Consensus 92 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~ 162 (430)
+++|-.+-++. .-|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|.
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887665543 2366777777777777777653321 12455555555555555555555554
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.64 E-value=0.18 Score=43.07 Aligned_cols=48 Identities=8% Similarity=-0.092 Sum_probs=33.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhccchhHHH
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDA---APYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 295 (430)
..-|.+.|.+..|..-++.+++.-|+.+ .+...|+.+|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3447888888888888888888777533 34567788888888877443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.64 E-value=0.36 Score=41.21 Aligned_cols=61 Identities=7% Similarity=-0.083 Sum_probs=36.7
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGF--RPDKITFVSVISSCSELATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 102 (430)
.....+.+.|++.+|.+.|+++...-. +--......++.++.+.|+++.|...++..++.-
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345556677778888888777776421 1112344556667777777777777777776653
No 211
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.61 E-value=0.0014 Score=37.79 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 264 AEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 264 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
+++.++++|+++.+|..|..+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888999999999999999999999999986
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.61 E-value=0.025 Score=43.93 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHh--------------hhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 043370 173 DVTFVSLLYACSHCGLKEKGMEFFDLMV--------------KKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--- 235 (430)
Q Consensus 173 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 235 (430)
..++..++.++++.|+++....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555555555555555554332 11133444555555555555555555555544433
Q ss_pred -CCCCCHHHHHHHHHH
Q 043370 236 -PVKANAIIWKTLLSA 250 (430)
Q Consensus 236 -~~~p~~~~~~~ll~~ 250 (430)
++.-+..+|..|+.=
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333334445444443
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.53 E-value=0.0042 Score=38.24 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
.+|..+...|...|++++|.++++++++.+|+|+..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778888999999999999999999999988888877653
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.34 E-value=0.84 Score=42.05 Aligned_cols=264 Identities=11% Similarity=0.042 Sum_probs=171.6
Q ss_pred ChHHHHHHHccCCCCCHHHHHHHHHHHHH--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCChHHHHHHHH
Q 043370 21 SLVEGEKVIRLMPIRNVIAWITLIAGKAQ--NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS--ELATLGQGQQIHA 96 (430)
Q Consensus 21 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~ 96 (430)
....+.+.|..-+. -.-|.+|-.++.. .|+-..|.++-.+-.+. +..|......++.+-. -.|+++.|++-|+
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34556666655332 2357777777665 46777777766655432 4556666666665543 4599999999999
Q ss_pred HHHHcCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CC
Q 043370 97 EVVKAGASLDVGV--ISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FE 170 (430)
Q Consensus 97 ~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 170 (430)
.|... |.... ...|.----+.|+.+.|+.+-+.... .-.-.|.+.+...+..|+|+.|+++.+.-+... +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 99862 22221 22233334578899998888776542 245678899999999999999999999876543 45
Q ss_pred CCHHH--HHHHHHHhh---hcCcHHHHHHHHHHHhhhcCCccCHhHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH
Q 043370 171 ANDVT--FVSLLYACS---HCGLKEKGMEFFDLMVKKYRRKPRLEHY-TCVVDLLGRCGYLDEAAALIRNM-PVKANAII 243 (430)
Q Consensus 171 p~~~t--~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 243 (430)
++..- -..|+.+-. -..+...|...-.+.. .+.|+..-- ..-..+|.+.|++.++-.+++.+ +..|.+.+
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 55432 223333321 1234555665554443 456765332 33467889999999999999999 66788877
Q ss_pred HHHHHHHHHhcCChhHHHHHH---HHHhcCCCCCChhHHHHHHHHHhccchhHHHHH
Q 043370 244 WKTLLSACKTHKSTDMAGRIA---EEILGVNPQDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~---~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
|...+ ..+.|+ .++.-+ +++..+.|+|..+-..+..+-...|++..|..-
T Consensus 299 a~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 299 ALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred HHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 75433 334444 333333 444577899999998999988888888776543
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.32 E-value=0.02 Score=53.85 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=64.8
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANA----IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
+...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4567788888888888888888888875 666653 35778888888888888888888888876321 222111
Q ss_pred H--HHHhccchhHHHHHHHHHHhCCCC
Q 043370 283 N--IHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 283 ~--~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
. .+....+.++..++++..++-|.+
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445667777777777754
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.30 E-value=0.033 Score=44.74 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=66.4
Q ss_pred chhHHHHHHHH---HHHcCChHHHHHHHccCCC----------C---------------CHHHHHHHHHHHHHCCChhHH
Q 043370 5 DLVAGSSLAHM---YMKSGSLVEGEKVIRLMPI----------R---------------NVIAWITLIAGKAQNGLAEDV 56 (430)
Q Consensus 5 ~~~~~~~li~~---~~~~g~~~~A~~~f~~m~~----------~---------------~~~~~~~li~~~~~~g~~~~A 56 (430)
|+..+..++.. ....|+.+.+...++++.. + -......++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 44455555433 3456777777666655421 0 112345566677788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-----HcCCCCcHhHH
Q 043370 57 LDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV-----KAGASLDVGVI 110 (430)
Q Consensus 57 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-----~~g~~~~~~~~ 110 (430)
+.+.+.+.... +-|...|..++.++...|+...|.+.|+.+. +.|++|+..+-
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 99999988764 5678888999999999999999998888764 35888876654
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.088 Score=46.62 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc---CCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043370 172 NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC---GYLDEAAALIRNM-PVKAN-AIIWKT 246 (430)
Q Consensus 172 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m-~~~p~-~~~~~~ 246 (430)
|...|..|..+|...|+.+.|..-|.+..+-. .++...+..+..++..+ ..-.++.++|+++ ..+|+ +.+-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 34445555555555555555555555444321 12233333333333221 1233455555554 33343 233333
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
|...+...|++.+|...++.|++..|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 33345666666666666666665555
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.23 E-value=0.052 Score=47.40 Aligned_cols=100 Identities=12% Similarity=0.125 Sum_probs=80.7
Q ss_pred HHHHHHccCC--CCCHHHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------
Q 043370 24 EGEKVIRLMP--IRNVIAWITLIAGKAQN-----GLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL----------- 85 (430)
Q Consensus 24 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 85 (430)
...+.|...+ ++|-.+|-+++..|... +..+-.-..++.|.+.|+..|..+|+.|++.+-+-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456777777 78999999999888764 45666667788999999999999999999977443
Q ss_pred -----CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 86 -----ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 86 -----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
.+-+-++.++++|...|+-||-.+-..|++++.+.|-.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22344778999999999999999999999999888753
No 219
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.23 E-value=0.88 Score=47.79 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=42.0
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTD 258 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 258 (430)
.+.+|..+|++++|..+..++.. +-..-..+-..|+.-+...++.-+|-++..+..-.|.. .+..+++...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHH
Confidence 34556666666666666655532 11111223345666666666666666666655323221 222345555566
Q ss_pred HHHHHHHHH
Q 043370 259 MAGRIAEEI 267 (430)
Q Consensus 259 ~a~~~~~~~ 267 (430)
+|.++....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 666665543
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.07 E-value=0.091 Score=42.39 Aligned_cols=84 Identities=6% Similarity=-0.057 Sum_probs=37.5
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS 126 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 126 (430)
+-+.|++++|..+|+-+...+ .-|..-+..|..++-..+++++|...|......+.. |+...--...+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 445555555555555554433 223333344444444445555555555544333221 222233344444455555555
Q ss_pred HHHHhc
Q 043370 127 VKTFLE 132 (430)
Q Consensus 127 ~~~~~~ 132 (430)
+..|+.
T Consensus 125 ~~~f~~ 130 (165)
T PRK15331 125 RQCFEL 130 (165)
T ss_pred HHHHHH
Confidence 554443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.02 E-value=0.017 Score=40.60 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
++..+...+...|++++|.+++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555444
No 222
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.56 Score=43.45 Aligned_cols=253 Identities=13% Similarity=0.039 Sum_probs=144.9
Q ss_pred HHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH
Q 043370 15 MYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD-KITFVSVISSCSELATLGQ 90 (430)
Q Consensus 15 ~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 90 (430)
.+.+..++.+|+..+.... ..++.-|..-...+..-|++++|+--.+.-.+. +|. .....-.-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 3344445555555544322 234555666666677777888777665554432 111 1122223333333333333
Q ss_pred HHHHHH---------------HHHHcCC-CCcHhHHHHH-HHHHHhcCCHHHHHHHHhccCCCCHh-HHHHHHH--HHHh
Q 043370 91 GQQIHA---------------EVVKAGA-SLDVGVISSL-ISMYSRCGCLDDSVKTFLECEYSDVV-LWSSMIA--AYGF 150 (430)
Q Consensus 91 a~~~~~---------------~~~~~g~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~d~~-~~~~li~--~~~~ 150 (430)
|.+.++ .+..... +|....+-.| ..++.-.|+.++|.++--.+.+.|.. .+...+. ++--
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc
Confidence 333322 1111111 1222233222 45667778888888876665544332 2333333 3344
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHhhhcCcHHHHHHHHHHHhhh--cCCccCHhHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSL-------------LYACSHCGLKEKGMEFFDLMVKK--YRRKPRLEHYTCV 215 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------------l~a~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l 215 (430)
.++.+.|...|++-++. .|+...-..+ .+-..+.|.+..|.+.|.+.+.. .++.|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 67889999999998875 4665433322 12234679999999999988732 1233445667777
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhcCCC
Q 043370 216 VDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSA--CKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.....+.|++++|..--++. .+. +..++..+..+ +...++++.|.+-++...+...
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77788999999999887766 443 23444444444 5667899999999999887665
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.087 Score=48.51 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=85.3
Q ss_pred HHHHHcCChHHHHHHHccCCC------------------CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHH
Q 043370 14 HMYMKSGSLVEGEKVIRLMPI------------------RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITF 75 (430)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 75 (430)
+.|.+.|++..|..-|++... .-+.+++.|..+|.+.+++.+|+...++.+..+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 468889999999888776320 123567778888889999999999988888876 6677777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH-HHHHhcc
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDS-VKTFLEC 133 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 133 (430)
---..++...|+++.|+..|+.+++..+. |-.+.+.|+.+--+.....+. .++|..|
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888889999999999988886433 556666666665555544433 4444444
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.94 E-value=0.013 Score=41.23 Aligned_cols=20 Identities=10% Similarity=0.373 Sum_probs=7.2
Q ss_pred HHHHhhhcCcHHHHHHHHHH
Q 043370 179 LLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~ 198 (430)
+...|...|++++|...|++
T Consensus 11 la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 11 LARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.85 E-value=0.9 Score=42.31 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=85.6
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVG---FRPDKITFVSVISSCSE---LATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
.|+-+|-...+++.-+++.+.|.... +.-....--...-|+.+ .|+.++|.+++..++...-.+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 45555777777777777777776531 11111111122333444 6777777777777555555666777766666
Q ss_pred HHHh---------cCCHHHHHHHHhccCCCCHhHHH--HHHHHHHhcCC----hHHHHHHH---H-HHHHCC---CCCCH
Q 043370 116 MYSR---------CGCLDDSVKTFLECEYSDVVLWS--SMIAAYGFHGK----GEEAINLF---E-QMEQKE---FEAND 173 (430)
Q Consensus 116 ~~~~---------~g~~~~A~~~~~~~~~~d~~~~~--~li~~~~~~g~----~~~A~~~~---~-~m~~~g---~~p~~ 173 (430)
.|-. ...+++|...|.+.-+-+...|+ .+...+...|. -.+..++- . .+.+.| -..|-
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 5531 22467777777654322221121 11111112222 11222222 1 122233 23445
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
..+.+++.++.-.|+.+.|.+..++|.+
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 6667788888888899999888888875
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.84 E-value=0.99 Score=38.36 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=36.3
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHH
Q 043370 219 LGRCGYLDEAAALIRNM-PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
+...++.++|...+... ...++ ...+..+...+...++.+.|...+.......|.....+..+...+...+.++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 33444444444444443 22222 3344444444444445555555555555444432333333333333444444444
Q ss_pred HHHHHH
Q 043370 296 EFREAM 301 (430)
Q Consensus 296 ~~~~~m 301 (430)
..+...
T Consensus 257 ~~~~~~ 262 (291)
T COG0457 257 EALEKA 262 (291)
T ss_pred HHHHHH
Confidence 444443
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.24 Score=45.69 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=78.2
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
..++..|.-+|.+.+.+.+|+..-+.. ... +|+...-.=..+|...|+++.|...|+++++++|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346777888899999999999888776 333 466666666778999999999999999999999999888888888887
Q ss_pred hccchhHH-HHHHHHHHhC
Q 043370 287 SAKRWQGV-SEFREAMRER 304 (430)
Q Consensus 287 ~~g~~~~a-~~~~~~m~~~ 304 (430)
+...+.+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77776664 7889988653
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.082 Score=49.81 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH----hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 170 EANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL----EHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 170 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+.+...++.+..+|...|++++|...|++.++ +.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33567888999999999999999999999874 45653 35888999999999999999998886
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.70 E-value=1.6 Score=42.86 Aligned_cols=252 Identities=14% Similarity=0.105 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHCCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHhccCChHH--HHHHHHHHHHcCCCCc
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQY---------NLMRMVGFRPDKITFVSVISSCSELATLGQ--GQQIHAEVVKAGASLD 106 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~~~~~~~~~g~~~~ 106 (430)
+.+.+=+..|...|.+++|.++- +.+... ..+...++..=.+|.+..+..- -..-++++.+.|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 44555566788889888886642 222211 1133345555566666555433 3334556777887777
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHhHHHH-----HHHHHHhcCChHHHHHHHHHHHH--CCC-CCCHHHH
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECEYS--DVVLWSS-----MIAAYGFHGKGEEAINLFEQMEQ--KEF-EANDVTF 176 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--d~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~--~g~-~p~~~t~ 176 (430)
... +.+.++-.|++.+|-++|.+--.. -...|+- ..+-|...|..++-..+.++--+ .++ .|-.
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka--- 708 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA--- 708 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---
Confidence 654 455667788899999998875432 2222322 23445566666665555554221 111 2221
Q ss_pred HHHHHHhhhcCcHHHHHHHHH---------HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFD---------LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTL 247 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~---------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 247 (430)
....+..+|+.++|..+.. .+..+ -...+.++...+..-+.+...+.-|-++|.+|+.. .++
T Consensus 709 --AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksi 779 (1081)
T KOG1538|consen 709 --AAEMLISAGEHVKAIEICGDHGWVDMLIDIARK-LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSL 779 (1081)
T ss_pred --HHHHhhcccchhhhhhhhhcccHHHHHHHHHhh-cchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHH
Confidence 2222334455555544321 11111 01124455555555666777888899999999632 245
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCh----------hHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAA----------PYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
+......+++++|..+.++.-+..|+-.- -|.---.+|.++|+-.+|.++++++....+
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 55667889999999999987766653221 234455688999999999999999876544
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.66 E-value=0.15 Score=44.70 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=81.3
Q ss_pred HHHHHHhccC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC----------
Q 043370 125 DSVKTFLECE--YSDVVLWSSMIAAYGFH-----GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG---------- 187 (430)
Q Consensus 125 ~A~~~~~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 187 (430)
-.++.|.... ++|-.+|-+++..+... ++.+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 67888999999888654 567777788899999999999999999999876532
Q ss_pred ------cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHH
Q 043370 188 ------LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLD 226 (430)
Q Consensus 188 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 226 (430)
+-+-+.+++++|.. +|+.||-++-..|+.++++.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23457889999965 599999999999999999988643
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.61 E-value=2.1 Score=40.42 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=60.5
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 228 AAALIRNMPVKA----NAIIWKTLLSA--CKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 228 A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
-+.++++.++.| +...-|.|-.| +..+|++.++.-.-.-+.++.| ++.+|..++-+.....++++|..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344555556554 45567777777 6789999999999999999999 9999999999999999999999999865
No 232
>PRK09687 putative lyase; Provisional
Probab=95.61 E-value=1.7 Score=39.26 Aligned_cols=240 Identities=14% Similarity=-0.003 Sum_probs=153.6
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcC
Q 043370 27 KVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL----GQGQQIHAEVVKAG 102 (430)
Q Consensus 27 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----~~a~~~~~~~~~~g 102 (430)
.+++.+..+|....-..+.++.+.|. .++...+..+.. .+|...-...+.++++.|+. +++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 34444567788788888888887775 445555555654 34667777777788888763 4566666665333
Q ss_pred CCCcHhHHHHHHHHHHhcCCH-----HHHHHHHhc-cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043370 103 ASLDVGVISSLISMYSRCGCL-----DDSVKTFLE-CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176 (430)
Q Consensus 103 ~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 176 (430)
.++..+....+.++...+.- ..+...+.. +..++...-...+.++.+.|+ ++|+..+-.+.+. +|...-
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR 176 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVR 176 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHH
Confidence 45666776666666665421 233444433 345566666777888888876 5677777777763 455555
Q ss_pred HHHHHHhhhcC-cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043370 177 VSLLYACSHCG-LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255 (430)
Q Consensus 177 ~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 255 (430)
...+.++.+.+ ....+...+..+..+ ++..+...-+.++++.|+..-.-.+++.+. .++ .....+.++...|
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcC
Confidence 56666666653 234566666666543 567777888889999998554444455544 234 3446778888888
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
.. .|...+.++.+.+| |...-..-+.++
T Consensus 250 ~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 85 68888888888777 555544444443
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.43 Score=42.95 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=91.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH----HhhcCCHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL----LGRCGYLD 226 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~ 226 (430)
.|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+..+|.-+-.+ +..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 46666666677777665 455556666666677777777777777777664 234555444443333 34567777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC----CCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 227 EAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP----QDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 227 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+|++.-++. .++| |.-.-.++...+...|+..++.+...+-...=. .-...|-...-.+...+.++.|.++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777665 4443 444455555556667777777766655432111 0123344445555666777777777765
Q ss_pred HHhCCCCCCC
Q 043370 301 MRERNVKKEP 310 (430)
Q Consensus 301 m~~~g~~~~~ 310 (430)
=.-..+.++.
T Consensus 273 ei~k~l~k~D 282 (491)
T KOG2610|consen 273 EIWKRLEKDD 282 (491)
T ss_pred HHHHHhhccc
Confidence 4443444433
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=1.6 Score=38.76 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=93.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
.......|+..+|..+|....... +-+...-..+..++...|+.+.|..++..+..+. -.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhc
Confidence 345566788888888888777653 2234455567777788888888888888765431 11111112234555556655
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC--CCCChhHHHHHHHHHhccchhH-HHHHHHH
Q 043370 225 LDEAAALIRNMPVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN--PQDAAPYVLLSNIHASAKRWQG-VSEFREA 300 (430)
Q Consensus 225 ~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 300 (430)
..+..++-.+..-.| |...--.+...+...|+.+.|...+-.+++.+ -.|...-..|+..+...|.-+. +.+.+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555554455 55555566666777888888877766666443 3466667777777776664333 3333333
Q ss_pred H
Q 043370 301 M 301 (430)
Q Consensus 301 m 301 (430)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.41 E-value=1.4 Score=38.47 Aligned_cols=68 Identities=4% Similarity=-0.047 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVG--FRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS 104 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 104 (430)
+..|-.=+..-.+.|++++|.+.|+.+...- -+-...+...++-++.+.+++++|....++.++.-+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 4444445555678999999999999998652 1223456667778888999999999999988876443
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=0.69 Score=44.55 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=25.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+...|..|.+...+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 344555555555555555555555554432 333444444445444444444444333
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.36 E-value=1.5 Score=37.20 Aligned_cols=222 Identities=13% Similarity=0.048 Sum_probs=154.2
Q ss_pred CCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGFR-PDKITFVSVISSCSELATLGQGQQIHAEVVKA-GASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666654322 13566777777777888888888887777652 33445667777788888888888888
Q ss_pred HHHhccCC--C-CHhHHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 128 KTFLECEY--S-DVVLWSSMIA-AYGFHGKGEEAINLFEQMEQKEF--EANDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 128 ~~~~~~~~--~-d~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
+.+..... + +......... .+...|+++.|...|.+...... ......+......+...++.+.+...+....+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 88887653 2 2223333333 78889999999999999865321 12334444444556778899999999999875
Q ss_pred hcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 202 KYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 202 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
. ... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3 233 3677888888899999999999988887 44454 445555555555777899999999999988884
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.34 E-value=1 Score=43.34 Aligned_cols=162 Identities=16% Similarity=0.094 Sum_probs=103.9
Q ss_pred HHHHHCCChhHHHHHHH--HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 45 AGKAQNGLAEDVLDQYN--LMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
....-.++++++.++.+ ++.. .++ ..-.+.++.-+.+.|..+.|.++-.. +. .-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 44566788888877765 2221 122 44577788888888988888876543 21 23566788999
Q ss_pred HHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 123 ~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+... |..|+-.|.-.|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999988766 677999999999999999999999987543 455666677778877766666555443
Q ss_pred cCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043370 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239 (430)
Q Consensus 203 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 239 (430)
| -++....++.-.|+.++..+++.+.+.-|
T Consensus 403 -~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 403 -G------DINIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred -c------CHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 2 23444455556688888888777765433
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.30 E-value=0.38 Score=45.06 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=96.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECE-----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVT-FVSLL 180 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll 180 (430)
..+|..+++.-.+..-++.|+.+|-+.. .+++..++++|.-++ .|++.-|.++|+.=... -||... -.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777777777888888887654 357777888887766 47777888888765443 344333 33455
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccC--HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPR--LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHK 255 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~ 255 (430)
.-+...++-+.|..+|+..+.+ +..+ ...|..+|+-=..-|++..|..+=+++ ..-|...+-..+.+.|....
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 5666778888888888866553 3333 467888888778888888887776666 33355555555555555443
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.29 E-value=1.3 Score=43.28 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=106.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKE-FEAND-----VTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEH 211 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~ 211 (430)
..+++...-.||-+.+++++.+-.+.+ +.-.. .+|..++..++. ....+.|.+++..+.++ -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 345556666899999999998876533 22111 233344433332 45788899999999875 366665
Q ss_pred HHHH-HHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH-HH
Q 043370 212 YTCV-VDLLGRCGYLDEAAALIRNMPV-K-----ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL-SN 283 (430)
Q Consensus 212 ~~~l-i~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~ 283 (430)
|... ...+...|++++|.+.|++.-. + .....+--+.-.+....++++|...+.++.+.+..+...|.-+ ..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5543 5666788999999999997521 1 1222333344457778899999999999998876566666554 44
Q ss_pred HHHhccch-------hHHHHHHHHHHh
Q 043370 284 IHASAKRW-------QGVSEFREAMRE 303 (430)
Q Consensus 284 ~~~~~g~~-------~~a~~~~~~m~~ 303 (430)
++...|+. ++|.+.+++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 45677877 788888887653
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.20 E-value=2.3 Score=38.37 Aligned_cols=117 Identities=9% Similarity=-0.014 Sum_probs=58.1
Q ss_pred HHcCChHHHHHHHccCCC------CC------HHHHHHHHHHHHHCCChhHHHHHHHHHHHC--------CCCCCH----
Q 043370 17 MKSGSLVEGEKVIRLMPI------RN------VIAWITLIAGKAQNGLAEDVLDQYNLMRMV--------GFRPDK---- 72 (430)
Q Consensus 17 ~~~g~~~~A~~~f~~m~~------~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~---- 72 (430)
.+.|+++.|...+.+.+. |+ ...||.-...+.+..++++|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467888888888877652 21 134554444443333777776666655332 122222
Q ss_pred -HHHHHHHHHHhccCChH---HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 73 -ITFVSVISSCSELATLG---QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 73 -~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
.++..++.++...+..+ +|..+.+.+.... +..+.++..-+..+.+.++.+++.+++.+|.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 23344555555444433 3344444443322 2123444344455555556666666665554
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=2.2 Score=37.99 Aligned_cols=137 Identities=11% Similarity=0.090 Sum_probs=83.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-HhHH---HHHHHHHHhcCChHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSD-VVLW---SSMIAAYGFHGKGEE 156 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d-~~~~---~~li~~~~~~g~~~~ 156 (430)
.....|++.++..+++........ +..+.-.|..+|...|+.+.|..+++.++... ...| .+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345678899999999988876544 56677788999999999999999999887431 1112 223344444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHh
Q 043370 157 AINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLG 220 (430)
Q Consensus 157 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 220 (430)
...+-++.-.. +-|...-..+...+...|+.++|.+.+-.+.++..-.-|...-..|++.+.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 44444444332 224455556666777778888877766655543222223344444444433
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.16 E-value=2.4 Score=40.58 Aligned_cols=143 Identities=14% Similarity=0.080 Sum_probs=74.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
+|.-..+..++..-+++-++.++. .||-.+.-.++. --......++++++++.++.|-.. .-...... ..|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~--lg~s~~~~---~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEAS--LGKSQFLQ---HHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHh--hchhhhhh---cccc
Confidence 344444566666666666666653 455444333322 122345678888888877654210 00000000 0111
Q ss_pred HHHHHHHHhccCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 123 LDDSVKTFLECEYSD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA--NDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 123 ~~~A~~~~~~~~~~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
..+....+| +..-.-+..+.-+.|+.+||++.|++|.+.. ++ +......|+.++...+...++..++
T Consensus 246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 111111222 2222335556667788888888888887642 22 2335566777888888888888777
Q ss_pred HHHh
Q 043370 197 DLMV 200 (430)
Q Consensus 197 ~~~~ 200 (430)
.+-.
T Consensus 319 ~kYd 322 (539)
T PF04184_consen 319 AKYD 322 (539)
T ss_pred HHhc
Confidence 7763
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.15 E-value=0.54 Score=37.07 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=35.7
Q ss_pred hhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh-hHHHHHHHH
Q 043370 220 GRCGYLDEAAALIRNM----PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA-PYVLLSNIH 285 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~ 285 (430)
.+.|++++|.+.|+.+ |..| ....--.|+.++.+.++++.|...+++.++++|.++. .|.....++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3556666666666655 2222 2333444566666666666676666666666665332 233334443
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.14 E-value=1.3 Score=35.14 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 77 SVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
.++..+...+.......+++.+.+.+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444555555555555555442 344455555555544
No 246
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.85 E-value=0.18 Score=46.55 Aligned_cols=220 Identities=13% Similarity=0.078 Sum_probs=135.1
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHhc-------cCCC--CHhHHHHHHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDV----GVISSLISMYSRCGCLDDSVKTFLE-------CEYS--DVVLWSSMIAA 147 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~--d~~~~~~li~~ 147 (430)
-+++.|+...+..+|+..++.|-+ |. .+|.-|.++|.-.+++++|.++-.. |-.+ ..-+...|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 468899999999999999998855 43 4567788888888999999886432 1111 22233345555
Q ss_pred HHhcCChHHHHHHHHH-H---HHCCCC-CCHHHHHHHHHHhhhcCc--------------------HHHHHHHHHHHh--
Q 043370 148 YGFHGKGEEAINLFEQ-M---EQKEFE-ANDVTFVSLLYACSHCGL--------------------KEKGMEFFDLMV-- 200 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~-m---~~~g~~-p~~~t~~~ll~a~~~~g~--------------------~~~a~~~~~~~~-- 200 (430)
+-..|.+++|+-.-.+ + .+.|-+ .....+..+.+.|-..|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777654322 1 222211 122334445555543331 223333333211
Q ss_pred -hhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHh-------CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh--
Q 043370 201 -KKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRN-------MPVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEIL-- 268 (430)
Q Consensus 201 -~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-- 268 (430)
...|-.. .-..|..|...|--.|+++.|...-+. .+.+. .-..+..+..++.-.|+++.|.+.++...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111111 123455566666667899998766442 23222 34567778888889999999999998875
Q ss_pred --cCCC--CCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 269 --GVNP--QDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 269 --~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
++.- .......+|.++|.-...+++|...+.+-
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3332 25567788999999999999999887653
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.82 E-value=3.5 Score=40.29 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC-CCCc-----HhHHHHHHHHHHh----cCCHHHHHHHHhccCC--CCHhHHHH
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAG-ASLD-----VGVISSLISMYSR----CGCLDDSVKTFLECEY--SDVVLWSS 143 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~~~~--~d~~~~~~ 143 (430)
..+++...-.|+-+.+.+.+.+..+.+ +... .-.|+..+..++. ....+.|.++++.+.. |+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344444445566666666555544421 1110 1122222222222 3355566666665543 44444433
Q ss_pred HH-HHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 144 MI-AAYGFHGKGEEAINLFEQMEQKE--F-EANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 144 li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
.- ..+...|+.++|++.|++..... . +.....+--+.-.+.-..++++|...|..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 22 23344566666666666543210 0 111223334444455556666666666666543
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=0.25 Score=43.25 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC---CChhHHH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-------PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ---DAAPYVL 280 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~ 280 (430)
.|+.-++.| +.|++.+|..-|... ...||..-| |..++...|+++.|..+|..+.+-.|. -+.+..-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344444433 444466665555544 122333333 555666666666666666666544432 3345555
Q ss_pred HHHHHHhccchhHHHHHHHHHHh
Q 043370 281 LSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 281 l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|.....+.|+.++|..+++++.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 56666666666666666666554
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.70 E-value=1.5 Score=33.91 Aligned_cols=139 Identities=13% Similarity=0.132 Sum_probs=82.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHH
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 229 (430)
-.|..++..++..+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 356777777777777654 244445555544444444455555555554433222 334444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 230 ALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 230 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
..+-.++ .+.......+......|+-+.-.++++.+...+..+|.....+..+|.+.|+..++.+++.+.=++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444433 234445667778889999999999999988554448889999999999999999999999998888873
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.63 E-value=1.8 Score=34.30 Aligned_cols=120 Identities=14% Similarity=0.253 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcH
Q 043370 113 LISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 189 (430)
++..+.+.+.......+++.+.. .+...+|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 44444444455555555444322 23445555555555442 2233333331 11222333455555555555
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC-GYLDEAAALIRNMPVKANAIIWKTLLSACK 252 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 252 (430)
+++.-++..+.. +...++.+... ++++.|.+++.+-. +...|..++..+.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 555555554421 11122222222 55555555555422 4445555555443
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=0.49 Score=41.49 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=37.6
Q ss_pred cCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhH
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKA-NAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~ 259 (430)
.|++..|.+-|...++.|.-.+ ....+-.|.+.+...|++++|...|..+ |..| -+...--|.......|+.+.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3334444444444444321111 1223333444444455555544444443 2112 12233333344455555555
Q ss_pred HHHHHHHHhcCCCC
Q 043370 260 AGRIAEEILGVNPQ 273 (430)
Q Consensus 260 a~~~~~~~~~~~p~ 273 (430)
|...++++.+.-|.
T Consensus 234 A~atl~qv~k~YP~ 247 (262)
T COG1729 234 ACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHCCC
Confidence 55555555555553
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.52 E-value=4.1 Score=37.98 Aligned_cols=262 Identities=12% Similarity=0.021 Sum_probs=130.1
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC---CCC-CHHHHHHHHHHHhcc
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPI--RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG---FRP-DKITFVSVISSCSEL 85 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p-~~~t~~~ll~~~~~~ 85 (430)
...+.-+.|+++.-.+....... ++...+.++... +.++++++....++....- +.+ ....|........+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 35667788999997777777765 345556655554 8899999988888776531 100 112222222222222
Q ss_pred CChHHHHHHHHHHHHc-------------------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHh--ccCCCCHhHHHHH
Q 043370 86 ATLGQGQQIHAEVVKA-------------------GASLDVGVISSLISMYSRCGCLDDSVKTFL--ECEYSDVVLWSSM 144 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~-------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~d~~~~~~l 144 (430)
..+.+..++.+..... ...++..++..++..-. -+|. .+......+|..+
T Consensus 82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~ 152 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKF 152 (352)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHH
Confidence 2222222222211111 11223333332222110 1111 1122345678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHH
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEA---NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLL 219 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~ 219 (430)
+..+.+.|+++.|...+..+...+..+ ++.....-.......|+..+|...++...+. .... +......+...+
T Consensus 153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (352)
T PF02259_consen 153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISNAELKSGL 231 (352)
T ss_pred HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccHHHHhhcc
Confidence 888888899998888888887643211 2333444455566778888888888777662 1111 111111111111
Q ss_pred hhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 220 GRCGYLDEAAALI-RNMPVKANAIIWKTLLSACKT------HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 220 ~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
.. ..+.....- .......-...+..+..-+.. .+..+.+...|+++.+..|.....|..+...+.+
T Consensus 232 ~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 232 LE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred cc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00 000000000 000000001122222222223 3778888999999999998777777776666543
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.51 E-value=1.9 Score=39.42 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=19.2
Q ss_pred HHCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVG--FRPDKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a 91 (430)
.+..+.++|+..+.+-+..- ..-.-.++..+..+.++.|.++++
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 34555566666555544320 011122344444444555544443
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.48 E-value=3 Score=36.36 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=44.6
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQDA---APYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.-|.+.|.+..|..-++++++.-|+.+ .++..|..+|...|..++|...-+-+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 348899999999999999998766544 45567788999999999999887766543
No 255
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.45 E-value=1.8 Score=33.57 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCc
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK 206 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 206 (430)
...+..+......|+-+.-.++++++.+. -.|++.....+.+||.+.|+..++.+++.+..+. |++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 34555677888889988888888888764 3778888888999999999999999999988776 653
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.37 E-value=1.5 Score=34.60 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=57.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEA---NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
.....+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++-+...|+ ..|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34444567777777777776654 221 2244556666677777777777777776654333333 234444444433
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 222 CGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 222 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
-...+..+.-+- +.+ ...+....|...|+++++.-|++
T Consensus 95 ~~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 95 YEQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCC
Confidence 322222221111 111 11122446777777777777743
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.13 E-value=3.6 Score=39.49 Aligned_cols=157 Identities=10% Similarity=0.028 Sum_probs=92.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 223 (430)
+|.-.-+..+.+.-+++-++.++ +.||-.+--.++ +--.+..+.++.+++++..+. + ...+..-- .....|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhccc
Confidence 33334456667777777777766 356654432222 333455678888888887653 1 00000000 000111
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC--CChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 224 YLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ--DAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 224 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.. .+.+..-..+|-..+-..+..++.+.|+.++|.+.++++.+..|. +......|+.++...+.+.++..++.+-
T Consensus 245 ~~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 HF---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ch---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11 111111111222333345666788899999999999999877663 5567889999999999999999999887
Q ss_pred HhCCCCCCCce
Q 043370 302 RERNVKKEPGV 312 (430)
Q Consensus 302 ~~~g~~~~~~~ 312 (430)
.+...++....
T Consensus 322 dDi~lpkSAti 332 (539)
T PF04184_consen 322 DDISLPKSATI 332 (539)
T ss_pred ccccCCchHHH
Confidence 55545444433
No 258
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=7.3 Score=39.25 Aligned_cols=243 Identities=11% Similarity=0.031 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCCC--------CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC----------
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPIR--------NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG---------- 67 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------- 67 (430)
..+|..+..---.+|+.+.|..+.+.=+.. +..-+..-+.-..+.|+.+-...++..|.+.-
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~ 586 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLR 586 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888999999999998865421 23334455555666676666665555543320
Q ss_pred CCCC-HHHHHHHH---------HHHhccCChHHHHHHHHHH-HH-cCCCCcHhHHHHHHHHHHhcCCHHHHHHHH-----
Q 043370 68 FRPD-KITFVSVI---------SSCSELATLGQGQQIHAEV-VK-AGASLDVGVISSLISMYSRCGCLDDSVKTF----- 130 (430)
Q Consensus 68 ~~p~-~~t~~~ll---------~~~~~~g~~~~a~~~~~~~-~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----- 130 (430)
..|. ...|.-++ +.+-...+......++-+- .+ .-+.+-........+.+++.....-..+..
T Consensus 587 ~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 587 NQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred hchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0111 11122111 1222333333333322221 01 001222222333445555554422222221
Q ss_pred -----hccCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 131 -----LECEYS-----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 131 -----~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
+.+... .-.+.+--+.-+...|+-.+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+...
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 111111 11233444556667788888888777654 4677777777778888888877666544432
Q ss_pred hhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043370 201 KKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAE 265 (430)
Q Consensus 201 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 265 (430)
.+.-|...+..+.+.|+.++|.+.+-+.+-.+ -...+|...|++.+|.++.-
T Consensus 743 -------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 -------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 24456667788888888888888887774322 34455666677666665543
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=8.3 Score=39.41 Aligned_cols=173 Identities=11% Similarity=0.101 Sum_probs=97.7
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHH----HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLI----AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
.-+++..+..-++.|..+-+.-.. |...-..+. +-+-+.|++++|..-|-+-... +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345666666677777776554332 222222222 2345678888888777665532 3332 2334444444
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVV-LWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
...+-..+++.+.+.|+. +...-+.|+++|.|.++.++-.+..+...+-... -....+..+.+.+-.++|..+-.+..
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 555556667777777776 5666677888888888888877777766521110 12334444555555555555544332
Q ss_pred HCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 166 QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 166 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
. +......++ -..+++++|.+++..+
T Consensus 491 ~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred c-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 2 223333333 3567777887777665
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.73 E-value=0.38 Score=42.80 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
++..++..+...|+.+.+...++++...+|-+...|..|+.+|...|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445566666677777777777777777777777777777777777777777777776654
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=93.72 E-value=1.3 Score=42.11 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043370 188 LKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGR---------CGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHK 255 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 255 (430)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456778888887744355664 3444444444322 22344556665555 3444 5666666666667777
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+.+.|...|++...++|+.+.+|........-.|+.++|.+.+++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7999999999999999988888988888888999999999888874
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.71 E-value=1.7 Score=33.62 Aligned_cols=86 Identities=16% Similarity=0.069 Sum_probs=40.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC--HhHHHHHHHHHhhcCCH
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR--LEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 225 (430)
.+..|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|.+=+++..+-.|-+.- ...|..-...|-..|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 44455555555555555543 2234455555555555555555555555555443222211 11222223344455555
Q ss_pred HHHHHHHHh
Q 043370 226 DEAAALIRN 234 (430)
Q Consensus 226 ~~A~~~~~~ 234 (430)
+.|..=|+.
T Consensus 132 d~AR~DFe~ 140 (175)
T KOG4555|consen 132 DAARADFEA 140 (175)
T ss_pred HHHHHhHHH
Confidence 555555543
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.61 E-value=0.12 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+|..+...+...|++++|+..+++.++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888887774
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=4.5 Score=41.24 Aligned_cols=179 Identities=14% Similarity=0.089 Sum_probs=105.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKAGASLDV--GVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~ 151 (430)
+..+-+..+.+...++.|..+-+. .+..++. .......+-+.+.|++++|...|-+....-.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 344556666666666666665433 3333321 22333444455788888888777653321111 1245556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
.+..+-..+++.+.+.|+.-. ..-+.|+++|.+.++.+.-.++.+... . |.. ..-....+..+-+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 666677777888888876533 334567888888888888776665543 1 211 11133456667777778888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 232 IRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 232 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
-.+.+. +......+ +-..+++++|.+++..+
T Consensus 486 A~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 776653 33333333 44567888888887663
No 265
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.44 E-value=2.6 Score=38.30 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHcC
Q 043370 53 AEDVLDQYNLMRMVGFRPDKITFVSVISSCSE--LA----TLGQGQQIHAEVVKAG 102 (430)
Q Consensus 53 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~g 102 (430)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 45566778888888888888887775544433 22 2455777888887754
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.29 E-value=6 Score=35.66 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=28.3
Q ss_pred HHCCChhHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHhccC-ChHHHHHHHHHHHH
Q 043370 48 AQNGLAEDVLDQYNLMRMVG--FRPDKI------TFVSVISSCSELA-TLGQGQQIHAEVVK 100 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g--~~p~~~------t~~~ll~~~~~~g-~~~~a~~~~~~~~~ 100 (430)
.+.|+.+.|..++.+..... ..|+.. .|+.-.+.+ ..+ +++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHH
Confidence 46788888888888876532 233321 222222332 334 66666666655433
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.27 E-value=0.21 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.|..+...+...|++++|.+.+++.++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556666777788888888888888777774
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.19 E-value=0.32 Score=29.71 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMV 66 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 66 (430)
.|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666664
No 269
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.19 E-value=5.9 Score=35.27 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh-------------------------cCCccC
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK-------------------------YRRKPR 208 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-------------------------~~~~p~ 208 (430)
..+|+++|.-+.... --+++-..++.++....+...|...+....-+ .+..-|
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 468888888887653 23345556677777777777666655443210 123345
Q ss_pred HhHHHHHHHHHhhc-CCHHHHHHHHHhC-C-CC--------CC-----HHHHHHH----HHHHHhcCChhHHHHHHHHHh
Q 043370 209 LEHYTCVVDLLGRC-GYLDEAAALIRNM-P-VK--------AN-----AIIWKTL----LSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 209 ~~~~~~li~~~~~~-g~~~~A~~~~~~m-~-~~--------p~-----~~~~~~l----l~~~~~~~~~~~a~~~~~~~~ 268 (430)
+.-|...+.-..+. -.++++.+++... + .- -| ..+|..+ -+.|...|.+.+|.++.++.+
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 56666666544332 3467777776655 1 10 11 2234333 345889999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 269 GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 269 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
.++|-+...+..|++.++..|+--.+.+-++.+.
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 9999999999999999999999888888777774
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.14 E-value=0.98 Score=34.85 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=51.0
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC-CCC---ChhHHHHHHHHHhccch
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVN-PQD---AAPYVLLSNIHASAKRW 291 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 291 (430)
+++..|+++.|++.|.+. .+-| ....||.-..++.-.|+.++|+.-+++.+++. |.. -.+|+.-...|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 345566666666666654 2222 45556666666666666666666666666553 221 12344555566666666
Q ss_pred hHHHHHHHHHHhCC
Q 043370 292 QGVSEFREAMRERN 305 (430)
Q Consensus 292 ~~a~~~~~~m~~~g 305 (430)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666655544
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.05 E-value=11 Score=37.89 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=55.5
Q ss_pred cCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGF--RPDKITFVSVISSCSELATLGQGQQIHA 96 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 96 (430)
-|++++|.+++-.|..+|. -|..+.+.|++-...++++.-- .+. .--...|+.+..-++....+++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888877765 2333445555554444432210 000 0011233333333333333333333322
Q ss_pred H-------------------H--HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 97 E-------------------V--VKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 97 ~-------------------~--~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
+ + ....++-|....-.+.+++...|.-++|.+.|-+..
T Consensus 821 ~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 821 YCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred hccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 1 1 112345566666677777777777777776665544
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=1.2 Score=36.20 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHH--
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI-TFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVIS-- 111 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-- 111 (430)
+.-..|..-+. .++.+..++|+.-|..+.+.|...-+. ...-.....++.|+...|...|.++-+....|-+.--.
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455555554 567788899999999998876432211 12223445567889999999999887755444332111
Q ss_pred -HHHHHHHhcCCHHHHHHHHhccCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043370 112 -SLISMYSRCGCLDDSVKTFLECEYS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN 172 (430)
Q Consensus 112 -~li~~~~~~g~~~~A~~~~~~~~~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 172 (430)
--.-.+...|.+++...-.+.+..+ -...-.+|.-+-.+.|++.+|.+.|..+......|-
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 1122356788888888877766532 223445666677788999999999998876544443
No 273
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=0.56 Score=41.86 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
++++++.++..=.+.|+-||.++++.+++.+.+.+++..|.++...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555444443
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.58 E-value=4 Score=37.05 Aligned_cols=127 Identities=10% Similarity=0.147 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh--cC----CHHHHHHHHhccCC-------CCHhHHHHHHHHHHhcCC-
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSR--CG----CLDDSVKTFLECEY-------SDVVLWSSMIAAYGFHGK- 153 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~-------~d~~~~~~li~~~~~~g~- 153 (430)
+++...+++.+.+.|+..+..++-+-.-.... .. ....|..+|+.|++ ++-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567789999999999887777553333332 22 35578889999874 345566666554 2232
Q ss_pred ---hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhhcCc--HHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 154 ---GEEAINLFEQMEQKEFEAND--VTFVSLLYACSHCGL--KEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 154 ---~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+. ++++...+|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 46777888888888876643 334444443333222 44788888888776 88888888776543
No 275
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.45 E-value=10 Score=36.05 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=101.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH-HH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY-TC 214 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~ 214 (430)
-...|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|..+|+.-...+ ||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 34567778888788778899999999999888 6677888888887554 577888889988766543 444343 34
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 215 VVDLLGRCGYLDEAAALIRNM--PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
.+.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.++-|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 566677889999999999865 22223 567888998888889999888888888888883
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=1.7 Score=39.24 Aligned_cols=115 Identities=15% Similarity=0.049 Sum_probs=92.0
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHH----HHHHHhcCChh
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV-KANAIIWKTL----LSACKTHKSTD 258 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l----l~~~~~~~~~~ 258 (430)
..|..-+|-..++++.++ .+.|.-.+.-.-+++...|+.+.-...++++ |. .||...|..+ .-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777888888998875 4557777777788899999999888888888 43 5665444333 22356789999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 259 MAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 259 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+|++..++..+++|.|.-+...+...+.-.|++.++.++..+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999988888889999999999999999887654
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.06 E-value=0.39 Score=27.81 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666666666666776666664
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.01 E-value=0.41 Score=27.70 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMR 64 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~ 64 (430)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666777777777777776643
No 279
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.99 E-value=3.6 Score=30.14 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
..++|..|-+.+...+-. ...+--+-+......|++++|..+.+.+..||...|-++-. .+.|..+++..-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356666666666554322 33333344566778899999999999998999999987754 456777777777777877
Q ss_pred CCCCCCHHHHHH
Q 043370 167 KEFEANDVTFVS 178 (430)
Q Consensus 167 ~g~~p~~~t~~~ 178 (430)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 565555543
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.69 E-value=8.6 Score=35.38 Aligned_cols=218 Identities=11% Similarity=0.099 Sum_probs=127.2
Q ss_pred HcCChHHHHHHHccCCCC------CHHHHHHHHHHHHHCCChhHHHHHH-HHHHHC-CCCCCH---HHHHHHHHHHhccC
Q 043370 18 KSGSLVEGEKVIRLMPIR------NVIAWITLIAGKAQNGLAEDVLDQY-NLMRMV-GFRPDK---ITFVSVISSCSELA 86 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~-g~~p~~---~t~~~ll~~~~~~g 86 (430)
...+.+.|+..+.+...+ -..++..+..+.+..|.+++++..- ..|.-. ...-.. ..|..+..++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777655432 2356777788888888888876542 222110 111111 23444444444444
Q ss_pred ChHHHHHHHHHHHHc-CCCC---cHhHHHHHHHHHHhcCCHHHHHHHHhccC-------CC--CHhHHHHHHHHHHhcCC
Q 043370 87 TLGQGQQIHAEVVKA-GASL---DVGVISSLISMYSRCGCLDDSVKTFLECE-------YS--DVVLWSSMIAAYGFHGK 153 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--d~~~~~~li~~~~~~g~ 153 (430)
++.+++.+-..-... |..| -..+..++..++...+.++.+++.|+... .+ ....+-.|-+.|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 444444444333221 1111 12345567777888888888888887643 11 34567788888899999
Q ss_pred hHHHHHHHHHHHH----CCCCCCHHHHHHHH-----HHhhhcCcHHHHHHHHHHHhhh---cCCcc-CHhHHHHHHHHHh
Q 043370 154 GEEAINLFEQMEQ----KEFEANDVTFVSLL-----YACSHCGLKEKGMEFFDLMVKK---YRRKP-RLEHYTCVVDLLG 220 (430)
Q Consensus 154 ~~~A~~~~~~m~~----~g~~p~~~t~~~ll-----~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~ 220 (430)
+++|+-+..+..+ .++..-..-|..++ -++...|.+..|.+.-++..+- +|..| ......++.+.|-
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998877766543 22222223344332 2455677777777777765442 23333 2345567788888
Q ss_pred hcCCHHHHHHHHHhC
Q 043370 221 RCGYLDEAAALIRNM 235 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m 235 (430)
..|+.|.|+.-++..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888888777654
No 281
>PRK11906 transcriptional regulator; Provisional
Probab=91.49 E-value=13 Score=35.50 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHH--HHHHHHHHHCC-----ChhHHHHHHHHHH
Q 043370 38 IAW--ITLIAGKAQNG-----LAEDVLDQYNLMR 64 (430)
Q Consensus 38 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~ 64 (430)
..| ...+.+..... ..+.|+.+|.+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~ 285 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQ 285 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHh
Confidence 556 55555544422 2345666666666
No 282
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.46 E-value=1.7 Score=31.84 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.+....+ +....|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3446677777777888999999999999999999999999999999976544 33336776664
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.42 E-value=6.5 Score=32.66 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECEYSD------VVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~~~d------~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
.+..+.+.|.+.|+.++|.+.|.++.+.. +..+-.+|......+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555555555555555555544321 223344444444455555555554444
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.40 E-value=6.6 Score=31.75 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=52.2
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChh
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAAALIRNMPVK-ANAIIWKTLLSACKTHKSTD 258 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~~~ 258 (430)
+.-...++.+++..++..+. -+.|.. ..-..-...+.+.|++++|..+|+++.-. |....-.+|+..|....+-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456678888888888775 345543 33333455567888888888888888333 44444455555555443333
Q ss_pred HHHHHHHHHhcCCC
Q 043370 259 MAGRIAEEILGVNP 272 (430)
Q Consensus 259 ~a~~~~~~~~~~~p 272 (430)
.=..+.+++.+.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 33344455555555
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.37 E-value=12 Score=34.76 Aligned_cols=68 Identities=7% Similarity=0.083 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC----CCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 239 ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP----QDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
....+|..+...+.+.|+++.|...+.++...++ ..+.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3566889999999999999999999999987652 2466777778899999999999999988877443
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=9.3 Score=33.21 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=42.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcC----CCCCChhHHHHH
Q 043370 215 VVDLLGRCGYLDEAAALIRNMP-----V--KANA-IIWKTLLSACKTHKSTDMAGRIAEEILGV----NPQDAAPYVLLS 282 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~-----~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~ 282 (430)
....|.+..++++|-..|.+-+ + -|+. ..|-+.|-.+.-..++..|.+.++.-..+ .|.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3344555566666555544431 0 1221 22333344455556677777777664322 344556666666
Q ss_pred HHHHhccchhHHHHHH
Q 043370 283 NIHASAKRWQGVSEFR 298 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~ 298 (430)
.+|- .|+.+++..+.
T Consensus 236 ~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHhc-cCCHHHHHHHH
Confidence 6663 45555555443
No 287
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.08 E-value=20 Score=36.67 Aligned_cols=49 Identities=4% Similarity=-0.105 Sum_probs=20.8
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
..++++.+...+..|.........-..=+.+++...|+.++|...|+..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444432211122333344444444445555555544443
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.99 E-value=7.7 Score=31.78 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=65.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHh-HHHHH--HHHHhhcC
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLE-HYTCV--VDLLGRCG 223 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 223 (430)
+++.+..++|+.-|.++.+.|...-++ .-..........|+...|...|+++-+. .-.|... -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 355677888888888887776543222 1222333456677778888888877655 2223221 11111 11234566
Q ss_pred CHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 224 YLDEAAALIRNMPV--KA-NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 224 ~~~~A~~~~~~m~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
.+++.....+.+.. +| -...-.+|--+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666666665521 12 122233444455566666666666666653
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=9.9 Score=32.81 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=16.0
Q ss_pred HHhcCChhHHHHHHHHHhcCC
Q 043370 251 CKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~ 271 (430)
-...+++.+|+.+|+++....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456688899999999986433
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.85 E-value=3.5 Score=36.81 Aligned_cols=77 Identities=10% Similarity=0.096 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-----cCCCCcHhHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK-----AGASLDVGVISSL 113 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 113 (430)
++..++..+...|+++.+...++++.... +-|...|..++.++.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455666666777777777777776654 44666777777777777777777777666543 4666666555544
Q ss_pred HHH
Q 043370 114 ISM 116 (430)
Q Consensus 114 i~~ 116 (430)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.80 E-value=2.2 Score=30.96 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
|.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.+..+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 5567777888888888999999999999999999999999999998865433 24456666554
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.55 E-value=0.49 Score=27.04 Aligned_cols=31 Identities=10% Similarity=0.303 Sum_probs=17.3
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
++.++.. |-|..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 225666666666666666666654
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=3.8 Score=40.17 Aligned_cols=150 Identities=16% Similarity=0.091 Sum_probs=84.7
Q ss_pred HcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043370 18 KSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAE 97 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 97 (430)
-.|+++.|..++..++++ .-+.++.-+-+.|-.++|+++ .+|....- ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 356677777766666633 233444545556666665543 22322211 122345777777666544
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 98 VVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 98 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
.. +..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-....+.|. - |
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N 725 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----N 725 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----c
Confidence 31 45557777777777777777777776543 255566666666766655555555555542 1 2
Q ss_pred HHHHHhhhcCcHHHHHHHHHHH
Q 043370 178 SLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
....++...|+++++.+++.+-
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHhc
Confidence 2233455667777776666543
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.16 E-value=11 Score=32.17 Aligned_cols=162 Identities=9% Similarity=0.017 Sum_probs=83.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV 216 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 216 (430)
-+..||-+.--+...|+++.|.+.|+...+.+ +....++..-.-++.-.|++..|.+=+...-+.-...|-...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34566666666677777777777777776643 11223322222234455667666665555443312222222332222
Q ss_pred HHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC-------CChhHHHHHHHHHhc
Q 043370 217 DLLGRCGYLDEAAAL-IRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ-------DAAPYVLLSNIHASA 288 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~ 288 (430)
. +.-++.+|..- .++.. ..|..-|..-|-.+.-..-.+ +.+++++.....+ -..+|.-|..-|...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 22344444433 23321 235555655554432211111 1233333322221 245788899999999
Q ss_pred cchhHHHHHHHHHHhCC
Q 043370 289 KRWQGVSEFREAMRERN 305 (430)
Q Consensus 289 g~~~~a~~~~~~m~~~g 305 (430)
|+.++|..+|+......
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999998765443
No 295
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.96 E-value=18 Score=34.44 Aligned_cols=252 Identities=9% Similarity=0.010 Sum_probs=141.8
Q ss_pred HHHcCChHHHHHHHccCCCC---C------HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hc
Q 043370 16 YMKSGSLVEGEKVIRLMPIR---N------VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC--SE 84 (430)
Q Consensus 16 ~~~~g~~~~A~~~f~~m~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~ 84 (430)
+-+.+++.+|.++|.++-.. + .+.-+.++++|..++ .+.....+....+. .| ...|..+..+. .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 44688999999999987532 2 344567888887654 44444444444443 23 23444444433 46
Q ss_pred cCChHHHHHHHHHHHHc--CCCC------------cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CCHhHHH
Q 043370 85 LATLGQGQQIHAEVVKA--GASL------------DVGVISSLISMYSRCGCLDDSVKTFLECEY--------SDVVLWS 142 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~d~~~~~ 142 (430)
.+.+.+|.+.+..-... +..| |...-+..+++..+.|++.+++.++++|.+ -++.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78889998888765543 2221 333446678888999999999999988752 3778888
Q ss_pred HHHHHHHhc-------C--------ChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHhhh--cCcHHHHHHHHHHH
Q 043370 143 SMIAAYGFH-------G--------KGEEAINLFEQMEQK------EFEANDVTFVSLLYACSH--CGLKEKGMEFFDLM 199 (430)
Q Consensus 143 ~li~~~~~~-------g--------~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~ 199 (430)
.++-.+.+. + .++.++-...+|... .+-|....+..++.-..- ..+..--.+++...
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 755444331 1 122333333333321 133433333333322211 11222223333333
Q ss_pred hhhcCCccCHh-HHHHHHHHHhhcCCHHHHHHHHHhC---CCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 200 VKKYRRKPRLE-HYTCVVDLLGRCGYLDEAAALIRNM---PVK----ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 200 ~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m---~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
.+. -+.|+-. +...|++-+.+ +.+++..+-+.+ .++ .=..++..++....+.++...|.+.+.-+.-++
T Consensus 252 e~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 252 ENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred Hhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 222 3445432 23344444443 445555544444 111 124568888888999999999999999888888
Q ss_pred CCC
Q 043370 272 PQD 274 (430)
Q Consensus 272 p~~ 274 (430)
|..
T Consensus 329 p~~ 331 (549)
T PF07079_consen 329 PRI 331 (549)
T ss_pred Ccc
Confidence 854
No 296
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.72 E-value=2.9 Score=30.60 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=22.5
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 102 (430)
+...|+|++|+.+.+.+ ..||...|..+-.. +.|..+....-+..+...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 44555555555554443 24555555444332 3344443333333444333
No 297
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.40 E-value=1.6 Score=36.51 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=58.0
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 219 LGRCGYLDEAAALIRNM-PVKA------NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
+.+.|++++|..-|... ..-| -.+.|..-..+..+.+.++.|+.-..+.++++|....+...-..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45567777776666554 1111 1233444445577778888888888888888886666666667778888888
Q ss_pred hHHHHHHHHHHhCC
Q 043370 292 QGVSEFREAMRERN 305 (430)
Q Consensus 292 ~~a~~~~~~m~~~g 305 (430)
++|..=++++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888776543
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.35 E-value=0.97 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666667777777777777766665
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.33 E-value=7.2 Score=32.41 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD--KITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
..+..+..-|.+.|+.++|++.|.++......|. ...+..++..+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677777888888888888888888876543333 23456677777777888777777666544
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.25 E-value=31 Score=37.02 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVT--FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC 222 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 222 (430)
+.+|...|+|.+|+.+-.+|... -|... -..|..-+...++.-+|-++..+...+ | .--+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhH
Confidence 44555566666666666555321 12221 134556666677777776666655432 1 2235556666
Q ss_pred CCHHHHHHHHHhC
Q 043370 223 GYLDEAAALIRNM 235 (430)
Q Consensus 223 g~~~~A~~~~~~m 235 (430)
..+++|..+....
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 7777777766554
No 301
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.78 E-value=12 Score=30.67 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=82.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC--CHHHHHHHHHhC
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG--YLDEAAALIRNM 235 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 235 (430)
++.++.+.+.+++|+...+..++..+.+.|....-.+++. +++-+|.....+.+-.+.... -..-|.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 4566667778888888888888888888888766554443 255555554444433232211 133455555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 236 PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 236 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
+. .+..++..+...|++-+|.++.+.....+. .....++.+-.+.++...-..+++-..+++.
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDS---VPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCccc---CCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 42 234456667788888888888877544332 2234566666667776666666666655543
No 302
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.43 E-value=0.71 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
+|..+...+...|+.+.|...|++..+++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555566777777777777777766666
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.34 E-value=28 Score=34.39 Aligned_cols=122 Identities=12% Similarity=0.008 Sum_probs=59.9
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCCCC---HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRN---VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+..+|..-++.-.+.|+.+.+.-+|++..-|- ...|--.+.-....|+.+-|-.++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34556666666666666666666666655431 233444444444446666665555544443222222222222222
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
+-..|++..|..+++.+...- +....+-..-+.+-.+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 334456666666666665542 222333333445555556655555
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.90 E-value=4.7 Score=33.91 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 89 GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE-------YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+.|.+.|-.+...+.--++....+|...|. ..+.++|..++.... ..|+..+.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555544445666666666665 345555555554321 335666666666666666666653
No 305
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=87.87 E-value=15 Score=31.80 Aligned_cols=148 Identities=11% Similarity=0.144 Sum_probs=83.0
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 91 (430)
-+..|++.-++..|-..++++.+| +.+--++++ |.+..+..--.++.+-...++++-+......++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 456666666666666666666555 222222322 444443333333433344444444444443333 2345666555
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 92 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
...++.-.. |+ | +-.+..+|+-..+|.+.....|+..+. .++.++|.+.+.++-+.|..|
T Consensus 212 lNnLQst~~-g~-----------------g-~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVN-GF-----------------G-LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhc-cc-----------------c-ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 554443221 11 1 122455677777888888888887665 577999999999999999888
Q ss_pred CHHHHHHHHHHhh
Q 043370 172 NDVTFVSLLYACS 184 (430)
Q Consensus 172 ~~~t~~~ll~a~~ 184 (430)
.... +.+...+-
T Consensus 272 ~Dii-~~~FRv~K 283 (333)
T KOG0991|consen 272 EDII-TTLFRVVK 283 (333)
T ss_pred HHHH-HHHHHHHH
Confidence 6542 34444443
No 306
>PRK09687 putative lyase; Provisional
Probab=87.77 E-value=21 Score=32.25 Aligned_cols=217 Identities=12% Similarity=0.004 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH----HHHHHHHhcc--CCCCHhHHH
Q 043370 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL----DDSVKTFLEC--EYSDVVLWS 142 (430)
Q Consensus 69 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~--~~~d~~~~~ 142 (430)
.+|.......+.++...|..+. ......+.+ .+|..+...-+.+++..|+. +++...+..+ ..+|...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~-~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDV-FRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchH-HHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 3455566666666666654322 222223332 23555666666666666652 4566666554 345555555
Q ss_pred HHHHHHHhcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 143 SMIAAYGFHGKG-----EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 143 ~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
..+.++...+.. .++...+..... .++..+-...+.++.+.++ +++...+-.+.++ ++...-..-+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHH
Confidence 555555554321 233444433333 2344555556666666665 3455555555442 34444455555
Q ss_pred HHhhcC-CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHH
Q 043370 218 LLGRCG-YLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 218 ~~~~~g-~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
++++.+ ..+.+...+..+-..+|..+-...+.++.+.++. .+...+-+.++.+ + .....+.++...|.. +|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~--~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG--T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC--c--hHHHHHHHHHhcCCH-hHHH
Confidence 555543 1334444444442345666666666667666663 4444444443321 1 344566666666664 4666
Q ss_pred HHHHHHh
Q 043370 297 FREAMRE 303 (430)
Q Consensus 297 ~~~~m~~ 303 (430)
.+..+.+
T Consensus 256 ~L~~l~~ 262 (280)
T PRK09687 256 VLDTLLY 262 (280)
T ss_pred HHHHHHh
Confidence 6666554
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.41 E-value=2.7 Score=39.91 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=78.2
Q ss_pred hcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHH
Q 043370 150 FHGKGEEAIN-LFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 150 ~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 228 (430)
..|+...|-+ +|.-+....-.|+.+...+.| ..+.|.++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3566655544 444444444456655554444 5678888888888877754 2444566778888888888999998
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 229 AALIRNM-PVK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 229 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
..+-..| +.+ .++.............|-++++...++++..++|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8888877 211 133333333334556677888888888888777643
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.34 E-value=5.2 Score=32.34 Aligned_cols=79 Identities=18% Similarity=0.081 Sum_probs=49.5
Q ss_pred HHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 211 HYTCVVDLL---GRCGYLDEAAALIRNM-PVKANAIIWKTLLS-ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 211 ~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
..+.|++.. .+.++.+++..++..+ -.+|.......+-. .+...|++.+|.++++.+.+..|..+..-..+.-++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 344454443 4668899999999888 34454433322222 367889999999999998877775444433344344
Q ss_pred Hhcc
Q 043370 286 ASAK 289 (430)
Q Consensus 286 ~~~g 289 (430)
...|
T Consensus 89 ~~~~ 92 (160)
T PF09613_consen 89 YALG 92 (160)
T ss_pred HHcC
Confidence 3333
No 309
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=86.96 E-value=11 Score=28.12 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=55.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
....++|..|.+.+...+- ....+--+-+..+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 3457888888888877654 23444445566777888888885555556678888887663 44677777888778777
Q ss_pred HHCCCCCCHHHHH
Q 043370 165 EQKEFEANDVTFV 177 (430)
Q Consensus 165 ~~~g~~p~~~t~~ 177 (430)
..+| .|....|.
T Consensus 96 a~~g-~~~~q~Fa 107 (116)
T PF09477_consen 96 ASSG-SPELQAFA 107 (116)
T ss_dssp CT-S-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6665 44444443
No 310
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.62 E-value=50 Score=35.50 Aligned_cols=255 Identities=8% Similarity=-0.079 Sum_probs=140.3
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043370 26 EKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASL 105 (430)
Q Consensus 26 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 105 (430)
..+...+..+|...-..-+..+.+.+. .+++..+..+++ .+|...-...+.++.+.+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 455555667888877777887777775 445565556654 345555555556555443221122333333332 4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
|..+..+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 666766677776654321 12334455667777666667777776655432 222222 3455555666666666
Q ss_pred cCcHHH-HHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 186 CGLKEK-GMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 186 ~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
.+..+. +...+..+.+ .++...-...+.++++.|..+.+...+..+-..++..+-...+.++...+.. ++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHH
Confidence 665432 3344455543 2567777788888888887655544343332345666666667777776653 444444
Q ss_pred HHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 265 EEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 265 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
..+++ +| +...-...+.++.+.+.-..+...+....
T Consensus 844 ~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 844 VEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44442 33 44455555566655432334554444443
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.44 E-value=2 Score=25.28 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRM 65 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 65 (430)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776653
No 312
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.40 E-value=12 Score=33.53 Aligned_cols=113 Identities=11% Similarity=0.195 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhh-c-CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 154 GEEAINLFEQMEQ-KEFEANDVTFVSLLYACSH-C-GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 154 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
..+|+++|+.... ..+--|..+...++..... . .....-.++.+.+...++..++..+-.+.++.++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4567777763322 2244456666666655443 1 12333344444444544556666666667777777777777666
Q ss_pred HHHhC-C---CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 231 LIRNM-P---VKANAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 231 ~~~~m-~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
+++.. + -.-|...|..+|..-...|+......+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 66654 1 112555666666666666665555554443
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.34 E-value=6 Score=28.81 Aligned_cols=58 Identities=12% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-HcCCCCcHhHHHHHH
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV-KAGASLDVGVISSLI 114 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li 114 (430)
++.+-++.+....+.|++....+.+.||-+.+++..|.++++-++ +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 455666667777788888888888888888888888888887665 3332 344555444
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.32 E-value=1.9 Score=25.36 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666777777666666543
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.07 E-value=2 Score=23.97 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666655
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.81 E-value=3.5 Score=32.75 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 221 RCGYLDEAAALIRNM-PVKAN---AIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
+.++++++..+++.| -.+|+ ..++... .+...|++++|.++++++.+..+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC
Confidence 467777777777777 23333 3333322 25667777777777777766665
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.78 E-value=0.32 Score=38.81 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFL 131 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 131 (430)
+..+.+.+.++....+++.+.+.+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555666666655444456666666666666655555555555
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.10 E-value=9 Score=34.55 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=72.1
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-C--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043370 101 AGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY-S--------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA 171 (430)
Q Consensus 101 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 171 (430)
.|.+....+...++..-....+++++...+-.+.. + ...+|--+ +. .=++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---ll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---LL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---HH-ccChHHHHHHHhCcchhcccc
Confidence 34455555666677766677788888888776652 1 22333322 22 346789999999889999999
Q ss_pred CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 172 NDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 172 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
|..|++.++..+.+.++..+|.++.-.|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777654
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.95 E-value=3.5 Score=37.47 Aligned_cols=44 Identities=23% Similarity=0.134 Sum_probs=22.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHH
Q 043370 147 AYGFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 192 (430)
-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHH
Confidence 455555555555555544432 33 555555555555555444433
No 320
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.66 E-value=21 Score=29.29 Aligned_cols=130 Identities=11% Similarity=0.069 Sum_probs=64.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhH-HHHHHHHHHhc-CCHHHHHHHHhccCC
Q 043370 58 DQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGV-ISSLISMYSRC-GCLDDSVKTFLECEY 135 (430)
Q Consensus 58 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~-g~~~~A~~~~~~~~~ 135 (430)
+.++.+.+.+++|+...+..++..+.+.|.+..-.+ ++..++-+|... ...|++.-.+. .-..-|.+.+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 444555566777777777777777777776544433 333333333332 22222221110 01222333333332
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 136 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
..+..++..+...|++-+|+++.++..... .++ -..++.+..+.++...-..+++-.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234556666777777777777776643221 112 233455555555554444444433
No 321
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.38 E-value=27 Score=30.47 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhc-CCccCH--hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKY-RRKPRL--EHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACK 252 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 252 (430)
|.-....|...|.++.|-..+++.-+-. ++.|+. ..|.--.......++...|.+++.. .-..+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk------------~sr~lV 161 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK------------CSRVLV 161 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH------------hhhHhh
Confidence 4444555666666665555555433210 233332 2222222233333444444444433 333456
Q ss_pred hcCChhHHHHHHHHHh----cCC--CCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 253 THKSTDMAGRIAEEIL----GVN--PQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~----~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+...+++|-..+.+-. +.+ |..-..|...+-.|....++..|+++++.
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 6666776666655543 222 32345688888888889999999998874
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.23 E-value=1.3 Score=35.30 Aligned_cols=84 Identities=5% Similarity=0.069 Sum_probs=45.4
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555566667777777777766554455666677777777766655555555411 11112334455555555
Q ss_pred HHHHHHHHhcc
Q 043370 123 LDDSVKTFLEC 133 (430)
Q Consensus 123 ~~~A~~~~~~~ 133 (430)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555544443
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.22 E-value=6.8 Score=28.85 Aligned_cols=59 Identities=7% Similarity=0.158 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++++-+... ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 45555666666777888888888888888888888888888776543 222222555554
No 324
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=83.98 E-value=32 Score=31.01 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=19.9
Q ss_pred HHHHHHHHHHH--HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 37 VIAWITLIAGK--AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 37 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
+..++-+|+-| ...+--++..+++.-+ .|+.++...=.+++.+.
T Consensus 111 ~qvf~KliRRykyLeK~fE~e~~k~Llfl--k~F~e~Er~KLA~~Tal 156 (412)
T KOG2297|consen 111 VQVFQKLIRRYKYLEKNFENEMRKFLLFL--KLFEENERKKLAMLTAL 156 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHH
Confidence 34556666543 2233223333333322 24566665555555543
No 325
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.87 E-value=13 Score=32.91 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh-
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQK--EFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR- 221 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 221 (430)
|.+++..++|.+++...-+--+. .++|.. ...-|-.|++.+....+.++-....+..+ .-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 67888889998888765444332 244443 33444568899999988888888776522 2234458888888765
Q ss_pred ----cCCHHHHHHHHHhC
Q 043370 222 ----CGYLDEAAALIRNM 235 (430)
Q Consensus 222 ----~g~~~~A~~~~~~m 235 (430)
.|.+++|+++...-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 59999999998543
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.75 E-value=56 Score=33.54 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCH
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECEYSDV 138 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~ 138 (430)
.+.-.|+..|...+++++|...+-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 4445689999999999999998877776543
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.78 E-value=49 Score=32.23 Aligned_cols=157 Identities=12% Similarity=0.110 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
...-+++..+.++-...-...+..+|+.-| -+...|..++..|... ..+.-..+++++++..+. |++...-|.+.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 334456666666666666666777776654 3556666677766665 445556666666666544 455555555555
Q ss_pred HhcCCHHHHHHHHhccCCC------C---HhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhhcC
Q 043370 118 SRCGCLDDSVKTFLECEYS------D---VVLWSSMIAAYGFHGKGEEAINLFEQMEQ-KEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~------d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g 187 (430)
-+ ++.+.+...|.....+ + -..|..++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 55 6666666666553211 1 12444443211 2334444444444433 222333344444445555566
Q ss_pred cHHHHHHHHHHHhh
Q 043370 188 LKEKGMEFFDLMVK 201 (430)
Q Consensus 188 ~~~~a~~~~~~~~~ 201 (430)
++++|.+++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 66666666665554
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.67 E-value=14 Score=31.20 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC--CccCHhHHHHHHHHHhhcCCHHHHH
Q 043370 155 EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR--RKPRLEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~ 229 (430)
++|.+.|-++...+.--++.....|. .|-...+.+++.+++....+-+. -.+++..+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46666666666655433333333333 33335566666666665544221 1345666666666666666666654
No 329
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.08 E-value=36 Score=30.16 Aligned_cols=255 Identities=15% Similarity=0.146 Sum_probs=146.0
Q ss_pred CCchhHHHHHHHHH-HHcCChHHHHHHHccCCC----C---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHC---CCC--
Q 043370 3 ELDLVAGSSLAHMY-MKSGSLVEGEKVIRLMPI----R---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMV---GFR-- 69 (430)
Q Consensus 3 ~~~~~~~~~li~~~-~~~g~~~~A~~~f~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~-- 69 (430)
+||+..-|..-+.= .+....++|+.-|.+..+ + .-.....+|..+.+.|++++.+..+.+|+.. .+.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 56665544332221 234578889888887642 2 2345567889999999999999999888631 122
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------
Q 043370 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKA-----GASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-------- 136 (430)
Q Consensus 70 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------- 136 (430)
-+..+.++++.-.....+.+.-..+++.-++. +-..--.+-+-|...|...|.+.+-.+++.++...
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 24556777777666666666666666543321 01111223456778888888888888888765411
Q ss_pred -------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhh-----hcCcHHHHHHHHHHHhhhc
Q 043370 137 -------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYACS-----HCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 137 -------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~ 203 (430)
-...|..=|..|....+-..-..+|++..... --|.+.. ..+|.-|. +.|.+++|..=|-+.-+.|
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 13467777888888877777777887764422 2344433 34555553 5677777654333332322
Q ss_pred ---CCccCH--hHHHHHHHHHhhcCCHHHHHHHHHh--C-CC--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 204 ---RRKPRL--EHYTCVVDLLGRCGYLDEAAALIRN--M-PV--KANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 204 ---~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~--m-~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
|.+... --|..|..++.++|-- -|+. . |. .|.......|+.+|..+ ++.+-++++
T Consensus 262 DEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 262 DESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 222111 2345556666665421 1111 1 22 35566777888888544 444433333
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.04 E-value=2.8 Score=38.04 Aligned_cols=92 Identities=10% Similarity=0.054 Sum_probs=69.8
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVK-ANAIIWKTLLSACKTHKST 257 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~ 257 (430)
+-|.++|.+++|+..|.... .+.| +..++..-..+|.+..++..|+.=.+.. ... .-...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 56889999999999999876 3456 7888888899999999998887655443 111 1234455555566667889
Q ss_pred hHHHHHHHHHhcCCCCCC
Q 043370 258 DMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~ 275 (430)
.+|.+-++..++++|.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 999999999999999643
No 331
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.09 E-value=11 Score=31.73 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=37.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHH---HHHHHhcCChHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDV----GVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSM---IAAYGFHGKGEE 156 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~l---i~~~~~~g~~~~ 156 (430)
..|++++|..-|...++.-++... ..|..-..+..+.+.++.|+.--....+-++.--.+| ..+|.+..++++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ee 186 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEE 186 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHH
Confidence 445555555555555544222111 2223333344455555555443333222222111111 235555666777
Q ss_pred HHHHHHHHHHC
Q 043370 157 AINLFEQMEQK 167 (430)
Q Consensus 157 A~~~~~~m~~~ 167 (430)
|+.=|.++.+.
T Consensus 187 aleDyKki~E~ 197 (271)
T KOG4234|consen 187 ALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHh
Confidence 77777776664
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.82 E-value=2.4 Score=22.29 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhccchhHHHHHHH
Q 043370 277 PYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 277 ~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777654
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.27 E-value=65 Score=31.95 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=78.3
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----HH-HH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAA---ALIRNM-PVKANAIIWKTLL----SA-CK 252 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll----~~-~~ 252 (430)
+-..|+.+.|..+++.+..++ |+. ..-.--+....+.|..+.+. .++... +.+-+..+...+. .- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 345689999999999998763 543 33333455566788888887 454444 2222222222222 21 55
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH---HHHHHHHHHhCCC
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG---VSEFREAMRERNV 306 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~g~ 306 (430)
..++.+.|..++.++.+..|++...|..+++.....+...+ -.-+...+....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~ 509 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLI 509 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhc
Confidence 67899999999999999999999999999998877663333 3334444444433
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.31 E-value=11 Score=32.11 Aligned_cols=57 Identities=16% Similarity=0.060 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
+.-++.+.+.+..++|+...++-.+.. +.|.-+-..++..++-.|++++|..-++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 444556666666777777666665542 233444445566666677777766555544
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.20 E-value=5.9 Score=22.02 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRM 65 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 65 (430)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777888888888888877765
No 336
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.89 E-value=1.4e+02 Score=35.07 Aligned_cols=64 Identities=5% Similarity=-0.077 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
..+|-....-++..|.++.|....-.+.+..+ +..+.-.+......|+...|..++++..+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 55788888889999999999988877776664 57888899999999999999999998876543
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.72 E-value=77 Score=31.89 Aligned_cols=176 Identities=14% Similarity=0.048 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHH-----HHhcCCHHHHHHHHhccCC--------CCHhHHHHHHHHHHhcC--
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISM-----YSRCGCLDDSVKTFLECEY--------SDVVLWSSMIAAYGFHG-- 152 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~--------~d~~~~~~li~~~~~~g-- 152 (430)
...+.+.++...+.|. ......+..+ +....+.+.|...|+...+ -+....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 4567788887777663 3222223222 3455688888888876533 13445556666666643
Q ss_pred ---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh-cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH--HHhhcCCHH
Q 043370 153 ---KGEEAINLFEQMEQKEFEANDVTFVSLLYACSH-CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD--LLGRCGYLD 226 (430)
Q Consensus 153 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~ 226 (430)
+.+.|+.+|.+.-..| .|+...+...+.-... ..+...|.++|....+. |..+ ...+.++.- +.+...+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~-A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL-AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH-HHHHHHHHHHhCCCcCCCHH
Confidence 5677888888888876 5666555444433333 24567888888888764 4322 222222211 122345677
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 043370 227 EAAALIRNMPV--KANAIIWKTLLSACKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 227 ~A~~~~~~m~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 270 (430)
.|..++.+.-. .|....-...+..+.. +..+.+...+..+.++
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 77777776611 2221111222222333 5555555555555433
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.41 E-value=4.3 Score=21.38 Aligned_cols=28 Identities=25% Similarity=0.138 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 245 KTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 245 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
..+...+...++.+.|...+++.++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444445555555555555544444
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.37 E-value=27 Score=33.59 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=92.4
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P-VKANAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a 260 (430)
-...|++..|.+-+....+.+.-.|+... .....+...|.++.+...+... + +.....+-..++....+.|+++.|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567776665544444444344444333 3334466789999999998877 2 234567788889999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeC
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMG 327 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~ 327 (430)
....+.|++-+-.++.....-...-...|-++++.-.|+++..-. |+....|+.+-.....|-.|
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCc
Confidence 999999986654455554444444556788899999999886544 44445566554444444433
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.03 E-value=8.8 Score=32.73 Aligned_cols=72 Identities=19% Similarity=0.077 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHH
Q 043370 212 YTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA---APYVLLSN 283 (430)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 283 (430)
.+.-++.+.+.+++.+|+...+.- +-+| |...-..++..++..|++++|..-++-.-.+.|+.. ..|..+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344566778888999998877654 5566 556667788889999999999988888888888532 34444443
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.66 E-value=3.7 Score=22.59 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=10.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~ 166 (430)
..+|.+.|++++|.+.|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344445555555555555444
No 342
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.25 E-value=53 Score=29.25 Aligned_cols=159 Identities=15% Similarity=0.076 Sum_probs=78.8
Q ss_pred HcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHhccCChH-HHH
Q 043370 18 KSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNL----MRMVGFRPDKITFVSVISSCSELATLG-QGQ 92 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~ 92 (430)
+.+++++|.+++.. =...+.++|+..-|-++-.- +.+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45667777766532 22335566666555444333 334566667666566665555443222 223
Q ss_pred HHHHHHHH---cC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 93 QIHAEVVK---AG--ASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 93 ~~~~~~~~---~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
++.+.+++ .| ...|+.....+...|.+.|++.+|+..|---..++...+..++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 33333333 22 2237788899999999999999999888655444444332233322223332222
Q ss_pred CCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 168 EFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 168 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
|...-..++ -|.-.+++..|...++...+.
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222222 345567777777777666543
No 343
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.95 E-value=47 Score=28.52 Aligned_cols=158 Identities=13% Similarity=0.012 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CcHhHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS-LDVGVISSLIS 115 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~ 115 (430)
+..||-|.--+...|+++.|.+.|+...+.+.. ...+...-.-++.--|+++.|.+-+.+.-+.... |-...|--|+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 456777777777788888888888877765422 2233222222233446777776655555443321 2122222111
Q ss_pred HHHhcCCHHHHHHHH-hccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHhhhcC
Q 043370 116 MYSRCGCLDDSVKTF-LECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-------DVTFVSLLYACSHCG 187 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~-~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~a~~~~g 187 (430)
-..-++.+|..-+ ++....|..-|..-|-.|.-..-.+ ..+|+++... -.-+ ..||.-+..-+...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1223455554433 3344445555655554443322111 2233333321 1111 235556666666677
Q ss_pred cHHHHHHHHHHHhh
Q 043370 188 LKEKGMEFFDLMVK 201 (430)
Q Consensus 188 ~~~~a~~~~~~~~~ 201 (430)
++++|..+|+-.+.
T Consensus 252 ~~~~A~~LfKLaia 265 (297)
T COG4785 252 DLDEATALFKLAVA 265 (297)
T ss_pred cHHHHHHHHHHHHH
Confidence 77777777666554
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.92 E-value=34 Score=33.91 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
...+.+++.+.+.|-.++|+++- +|..- -.....+.|+++.|.++..+.. +..-|..|..+..+.+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc
Confidence 35678889999999999998873 22211 1223457788888887765543 5577888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
++..|.+.|.+... +..|+-.|...|+-+.-..+-....+. -..|.-..+|...|+++++++++.+-
T Consensus 681 ~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 681 ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ--GKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh--cccchHHHHHHHcCCHHHHHHHHHhc
Confidence 99988888876654 445666777777765443333332211 11222333566788999888887654
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.79 E-value=3.8 Score=22.54 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=12.0
Q ss_pred HHHhcCChhHHHHHHHHHhcCCC
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
++.+.|+.++|...++++++..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 34445555555555555555444
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.77 E-value=37 Score=27.17 Aligned_cols=53 Identities=25% Similarity=0.177 Sum_probs=35.7
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAAALIRNMPVKA 239 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 239 (430)
...++.+++..+++.|. -+.|+. ..-..-...+.+.|++++|..+|++....+
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34778888888888875 345543 223333455678899999999998884443
No 347
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.26 E-value=37 Score=27.02 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=33.3
Q ss_pred CHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc
Q 043370 137 DVVLWSSMIAAYGFHGK-GEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 186 (430)
+-.+|++++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44567777777755544 334566777777766777777777777776654
No 348
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.85 E-value=20 Score=27.67 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043370 155 EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRN 234 (430)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (430)
-|..+-++.+...++.|++......+.||.+.+++..|.++|+-+... ..+....|-.+++ +..-++++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~E 134 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNE 134 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHH
Confidence 355666777777789999999999999999999999999999998654 4444445665553 44556666
Q ss_pred CCC
Q 043370 235 MPV 237 (430)
Q Consensus 235 m~~ 237 (430)
+|+
T Consensus 135 LGI 137 (149)
T KOG4077|consen 135 LGI 137 (149)
T ss_pred hCC
Confidence 654
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=75.75 E-value=44 Score=32.85 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 357778888999999999888876
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.68 E-value=8.6 Score=26.83 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=23.6
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHhhcCCHHHHHHH
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 231 (430)
+.+..++|+..|....+...-.|+. .+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555442222221 3445555566666666555543
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.12 E-value=3.5 Score=26.36 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
+.-++.+.|+++.|.+..+.+++.+|.|..+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3447889999999999999999999976544
No 352
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.80 E-value=57 Score=28.39 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHHhhhcCCcc-CH---hHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHHH--HHh-
Q 043370 187 GLKEKGMEFFDLMVKKYRRKP-RL---EHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAIIWKT---LLSA--CKT- 253 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p-~~---~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~~--~~~- 253 (430)
.++++|+..|++.-+-+.... +. .++.-+.+.-+..+++.+|.++|++. ....+..-|.. ++.+ |.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455566666665543222211 11 22222333345678899999999887 23333333432 3333 222
Q ss_pred cCChhHHHHHHHHHhcCCCC
Q 043370 254 HKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~ 273 (430)
..+.-.+.+.+++-.+++|.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 36777788888888889985
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.90 E-value=1.2e+02 Score=31.78 Aligned_cols=193 Identities=15% Similarity=0.081 Sum_probs=105.9
Q ss_pred HhcCCHHHHHHHHhcc----CCCC-------HhHHHHHHHH-HHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 043370 118 SRCGCLDDSVKTFLEC----EYSD-------VVLWSSMIAA-YGFHGKGEEAINLFEQMEQKE----FEANDVTFVSLLY 181 (430)
Q Consensus 118 ~~~g~~~~A~~~~~~~----~~~d-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~ 181 (430)
....++++|..+..+. +.++ ...|+++-.- ....|++++|.++-+.....= ..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888888887764 2322 1356655433 334688899999888776541 1233455556666
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH-----HHHhhcCCHH--HHHHHHHhC-----CCCC----CHHHHH
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV-----DLLGRCGYLD--EAAALIRNM-----PVKA----NAIIWK 245 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~--~A~~~~~~m-----~~~p----~~~~~~ 245 (430)
+..-.|++++|..+..+..+. .-.-++.++.... ..+...|+.. +.+..|... +-+| -..++.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777789999998887766543 2222333332222 2344556332 222233322 1122 233444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHh----cCCCCCCh---hHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeE
Q 043370 246 TLLSACKTHKSTDMAGRIAEEIL----GVNPQDAA---PYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSW 314 (430)
Q Consensus 246 ~ll~~~~~~~~~~~a~~~~~~~~----~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 314 (430)
.++.++.+ .+.+..-...-. ...|..-. .+..|+.++...|+.++|...++++........+.+.|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 45555443 333333333222 22232211 22367888899999999999999988766555454544
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.44 E-value=9.1 Score=23.36 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=14.6
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHC
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMV 66 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~ 66 (430)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.72 E-value=8.6 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=19.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcC
Q 043370 77 SVISSCSELATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~~~~g 102 (430)
.+..+|...|+.+.|++++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677888888888888888887654
No 356
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.12 E-value=76 Score=30.13 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=38.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHh--hhcCcHHHHHHHHHHHhhh
Q 043370 147 AYGFHGKGEEAINLFEQMEQKEFEANDV--TFVSLLYAC--SHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~--~~~g~~~~a~~~~~~~~~~ 202 (430)
.+.+.+++..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344788999999999999887 566554 333444443 4567788899988887654
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.00 E-value=49 Score=31.64 Aligned_cols=19 Identities=5% Similarity=-0.148 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHhc
Q 043370 114 ISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~ 132 (430)
+...++.|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3444456666666555554
No 358
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=71.87 E-value=81 Score=28.87 Aligned_cols=83 Identities=16% Similarity=0.035 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHhhhcCC---ccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 188 LKEKGMEFFDLMVKKYRR---KPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
-.++|.+.|......... ..+......+.....+.|..++-..+++.....++...-..++.+.+...+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 356788888888763111 34556667777777888887766666665554567888889999999999999999999
Q ss_pred HHHhcC
Q 043370 265 EEILGV 270 (430)
Q Consensus 265 ~~~~~~ 270 (430)
+.+..-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 999874
No 359
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.73 E-value=90 Score=29.36 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=50.7
Q ss_pred CHHHHHHHH---HHHHhcCChhHHHHHHHHHhcCCCC-CChhHHHHHHHHH-hccchhHHHHHHHHHHh
Q 043370 240 NAIIWKTLL---SACKTHKSTDMAGRIAEEILGVNPQ-DAAPYVLLSNIHA-SAKRWQGVSEFREAMRE 303 (430)
Q Consensus 240 ~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 303 (430)
|...|.++. ..+.+.|-+..|.++.+-+..++|. |+..-...++.|+ +.++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 555565554 4478899999999999999999997 8888888888885 77788878888777654
No 360
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.47 E-value=33 Score=27.35 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=48.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVG---F--RPDKITFVSVISSCSELAT-LGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
.|+++.-.+..+++...+.+++.+..-. + ..|..+|..++.+.++... --.+..+|..+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5556655555566666666555553210 0 2345667777777765554 33456677777776677777777777
Q ss_pred HHHHHhc
Q 043370 114 ISMYSRC 120 (430)
Q Consensus 114 i~~~~~~ 120 (430)
+....+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766544
No 361
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.05 E-value=48 Score=27.48 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 257 TDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
+++|...|++....+| +...|..-+.+. .+|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P-~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDP-NNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 5677777888888899 556777666655 3577888888877754
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.60 E-value=12 Score=36.71 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=32.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 215 VVDLLGRCGYLDEAAALIRNM-PV-KANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
|.....+.|...+|-.++.+. .+ ...+.++-.+..++....+++.|++.|+++.+++|+++..-..|.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 333444444444454444332 11 122334444555555555555555555555555555555444443
No 363
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.14 E-value=66 Score=27.12 Aligned_cols=128 Identities=13% Similarity=0.041 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH---
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV--SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT--- 213 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--- 213 (430)
..|..++.... .+.+ +......++....-+..-.++. .+...+...|++++|...++..... |....+.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHH
Confidence 44555555543 3333 5555566665542111112222 2334567788888888888876532 2222232
Q ss_pred --HHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 214 --CVVDLLGRCGYLDEAAALIRNMPVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 214 --~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
-|.......|.+|+|+.+++...-.. .......-.+.+...|+-+.|...|++.++.++
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 24445667788888888887653110 111122223347778888888888888776654
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.66 E-value=45 Score=25.05 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
-|..++.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888766
No 365
>PRK12798 chemotaxis protein; Reviewed
Probab=68.88 E-value=1.1e+02 Score=29.16 Aligned_cols=181 Identities=12% Similarity=0.127 Sum_probs=115.2
Q ss_pred cCCHHHHHHHHhccCC----CCHhHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhhcCcHH
Q 043370 120 CGCLDDSVKTFLECEY----SDVVLWSSMIAAYGF-HGKGEEAINLFEQMEQKEFEAND----VTFVSLLYACSHCGLKE 190 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~----~d~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 190 (430)
.|+.++|.+.+..+.. +....|-+|+.+-.. ..++.+|+++|+...-. .|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 7999999999998864 355667777766544 56899999999987653 4443 23333344567889999
Q ss_pred HHHHHHHHHhhhcCCccCHhHH-HHHHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 191 KGMEFFDLMVKKYRRKPRLEHY-TCVVDLLGRC---GYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 191 ~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
++..+-.+...+|...|=...| ..++..+.+. -..+.-..++..|.-.--...|-.+-..-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8887777766666555533332 2333344433 34455556666663222456888888889999999999999999
Q ss_pred HhcCCCCCChhHHHHHHHHH-----hccchhHHHHHHHHHHh
Q 043370 267 ILGVNPQDAAPYVLLSNIHA-----SAKRWQGVSEFREAMRE 303 (430)
Q Consensus 267 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~ 303 (430)
...+.. ....-...+..|. -..+++++.+.+..+..
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 987653 2222223333332 33446666666655433
No 366
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=68.86 E-value=1e+02 Score=28.95 Aligned_cols=199 Identities=14% Similarity=0.153 Sum_probs=112.7
Q ss_pred cCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhh----
Q 043370 120 CGCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQ-KEFEANDVTFVSLLYACSH---- 185 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~---- 185 (430)
.++.++|.+-+-...+ .| ......++..|...++|+.--+...-+.+ .|. .......++.-+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq--lk~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ--LKQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHhccC
Confidence 5566666655543321 13 23344566667777777766665555433 221 22233333332221
Q ss_pred cCcHHHHHHHHH---HHhhhcCCcc---CHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH------------H
Q 043370 186 CGLKEKGMEFFD---LMVKKYRRKP---RLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKT------------L 247 (430)
Q Consensus 186 ~g~~~~a~~~~~---~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~------------l 247 (430)
..+.+--..+.+ ...+. .+-. -...-..|...+-.+|++++|.+++.+.+++ ||.+ -
T Consensus 103 ~~d~~~k~~li~tLr~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQ 177 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQ 177 (439)
T ss_pred CCCchhHHHHHHHHHHhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHH
Confidence 111222222222 22111 1111 1223345777888899999999999988543 3322 2
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCC---CC----CChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVN---PQ----DAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQ 320 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~ 320 (430)
+..|...+++-.|.-+-+++.... |+ -...|..++....+.+.+-++-+.++..-..|-.+...--|+.+-..
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
Confidence 345788889999988888775321 21 12468889999999999999999999998776554433446655444
Q ss_pred EEEEE
Q 043370 321 VHQFT 325 (430)
Q Consensus 321 ~~~~~ 325 (430)
+-.|.
T Consensus 258 iv~f~ 262 (439)
T KOG1498|consen 258 IVSFC 262 (439)
T ss_pred heeEE
Confidence 43343
No 367
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.79 E-value=96 Score=28.47 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=24.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 147 AYGFHGKGEEAINLFEQMEQKEFEANDV---TFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
+-.+.|+..+|.+.|+++.+. .|-.. ....|+.+|.....+.+...++.+.
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334456666666666665543 22111 1224555555555444444444433
No 368
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.38 E-value=28 Score=22.21 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCc
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGY 353 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 353 (430)
...+.-++.+.|++++|.+..+.+.+. .|...++......+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999988653 34445555555566677777763
No 369
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.98 E-value=59 Score=33.18 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=12.3
Q ss_pred hhcCCHHHHHHHHHhCCCCC
Q 043370 220 GRCGYLDEAAALIRNMPVKA 239 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m~~~p 239 (430)
...|++++|++.++++++-|
T Consensus 516 ~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 516 YHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHTT-HHHHHHHHHHTT-S-
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 45677777777777776666
No 370
>PRK10941 hypothetical protein; Provisional
Probab=67.93 E-value=30 Score=30.98 Aligned_cols=61 Identities=21% Similarity=0.098 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 244 WKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.--.-+|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3455556889999999999999999999988888887888899999999998888877543
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.76 E-value=42 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=12.8
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
++.+.++++.+.++.+.+++.+|+|
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3445555555555555555555533
No 372
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=66.90 E-value=1e+02 Score=28.15 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 172 NDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 172 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
+...-..++.+.+...+.+...++++.+..
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444555555555555555555555544
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.51 E-value=6.8 Score=30.47 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 183 (430)
..|.-.+|..+|++|++.|-+||. |+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999986 66676654
No 374
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.92 E-value=11 Score=20.42 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 255 KSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 255 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
|+.+.|..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888777777777766554
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.74 E-value=47 Score=23.78 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=15.7
Q ss_pred CCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCCh
Q 043370 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKG 154 (430)
Q Consensus 121 g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~ 154 (430)
|+.+.|.++++.++ +....|...++++-..|+-
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 44444444444444 4444444444444444443
No 376
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.35 E-value=2.1e+02 Score=30.85 Aligned_cols=153 Identities=9% Similarity=0.005 Sum_probs=66.6
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043370 105 LDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEE-AINLFEQMEQKEFEANDVTFVSLLYAC 183 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~ 183 (430)
+|..+....+....+.+..+. +......++...-...+.++...+..+. +...+..+.. .+|...-...+.++
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aL 799 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAAL 799 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 345555555555555443322 2222334444444445555555444322 2333444433 23455555555566
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRI 263 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 263 (430)
...|..+.+...+..+.++ ++..+-...+.++++.+.- ++...+..+-..|+...-...+.++.+......+...
T Consensus 800 g~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~ 874 (897)
T PRK13800 800 AELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAAD-VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDA 874 (897)
T ss_pred HhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhcccc-chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHH
Confidence 5555544333333333322 3444444455555555542 2333333332234555544555555443222334444
Q ss_pred HHHHh
Q 043370 264 AEEIL 268 (430)
Q Consensus 264 ~~~~~ 268 (430)
+..++
T Consensus 875 L~~al 879 (897)
T PRK13800 875 LTTAL 879 (897)
T ss_pred HHHHH
Confidence 44433
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.44 E-value=59 Score=25.18 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHHHHh--cCCCCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 259 MAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 259 ~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
.+..+|+.|. +++...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8888898886 45556777888999999999999999999874
No 378
>PRK10941 hypothetical protein; Provisional
Probab=63.27 E-value=37 Score=30.36 Aligned_cols=68 Identities=7% Similarity=-0.074 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
..+.+-.+|.+.++++.|+...+.+ .+.|+ +.-|.--.-.|.+.|....|..-++..++..|.++.+-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3455667788889999999988887 45553 44455555568899999999999999988888766543
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.16 E-value=38 Score=30.42 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhc
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 132 (430)
..+.+.|...|.+.+|.++++..+... +.+...+-.|+..++..|+--.|.+-++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 334444455555555555555554442 22444455555555555554444444433
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.67 E-value=44 Score=24.98 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=43.2
Q ss_pred cCChHHHHHHHccCCC-CCHHHHHHHH--HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043370 19 SGSLVEGEKVIRLMPI-RNVIAWITLI--AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 19 ~g~~~~A~~~f~~m~~-~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
..+.++|..+.+.+.. ++..---.|| ..+...|+|++|+. .-. ....||...|..|-. .+.|..+++...+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl---~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALL---LPQ-CHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH---HHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH---hcc-cCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 3456777777665542 2222233343 45778899999822 222 224788888876654 3677777777777
Q ss_pred HHHHHcC
Q 043370 96 AEVVKAG 102 (430)
Q Consensus 96 ~~~~~~g 102 (430)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7665554
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.36 E-value=34 Score=28.71 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 236 PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 236 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
...|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777777888888777777777777
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.05 E-value=30 Score=24.25 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=32.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhhcCcHHHHHHH
Q 043370 150 FHGKGEEAINLFEQMEQKEFEAND--VTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
...+.++|+..|+..++.-..|.. .++..++.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887765333322 4667778888888888777664
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.56 E-value=1.9e+02 Score=29.46 Aligned_cols=263 Identities=11% Similarity=0.038 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHH-HCCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC
Q 043370 36 NVIAWITLIAGKA-QNGLAEDVLDQYNLMRMVGFRPDKI-----TFVSVISSCSELATLGQGQQIHAEVVKA----GASL 105 (430)
Q Consensus 36 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~ 105 (430)
+..++-.+...+. ...++++|...+.+....--+++-. .-..++..+.+.+... |....+..++. +..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4455666666665 5678888888888765432222221 1123445555554444 77777776542 1222
Q ss_pred cHhHHHHH-HHHHHhcCCHHHHHHHHhccCC-----CC--HhHHHHHHHHH--HhcCChHHHHHHHHHHHHCCC------
Q 043370 106 DVGVISSL-ISMYSRCGCLDDSVKTFLECEY-----SD--VVLWSSMIAAY--GFHGKGEEAINLFEQMEQKEF------ 169 (430)
Q Consensus 106 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~d--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~------ 169 (430)
-...+.-+ +..+...++...|.+.++.+.. .| +...-.++.+. .+.+..+++++..+++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 23333333 3344344788888888876541 22 23333333333 345667777777777643221
Q ss_pred ---CCCHHHHHHHHHHhh--hcCcHHHHHHHHHHHhh---hcCCc--------------------------cCHh-----
Q 043370 170 ---EANDVTFVSLLYACS--HCGLKEKGMEFFDLMVK---KYRRK--------------------------PRLE----- 210 (430)
Q Consensus 170 ---~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~---~~~~~--------------------------p~~~----- 210 (430)
.|-..+|..++..++ ..|+++.+...++++.+ ...-. |...
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 234456666666543 56666665555444321 10000 1111
Q ss_pred ----HHHHHHHH--HhhcCCHHHHHHHHHhC-------C----CCC--------CHHHHHHHHHH---------HHhcCC
Q 043370 211 ----HYTCVVDL--LGRCGYLDEAAALIRNM-------P----VKA--------NAIIWKTLLSA---------CKTHKS 256 (430)
Q Consensus 211 ----~~~~li~~--~~~~g~~~~A~~~~~~m-------~----~~p--------~~~~~~~ll~~---------~~~~~~ 256 (430)
....++.+ ++..|..++|.+++++. . ..| +...|...+.. .+..++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 11112222 23344444555554433 2 011 11233333322 355788
Q ss_pred hhHHHHHHHHHhcCC---CC------CChhHHHHHHHHHhccchhHHHHHHH
Q 043370 257 TDMAGRIAEEILGVN---PQ------DAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+..|....+.+.+.. |. .+..+...+-.+...|+.+.|...|.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999999999887432 21 24445555666678899999999997
No 384
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.55 E-value=1.3e+02 Score=31.02 Aligned_cols=180 Identities=14% Similarity=0.176 Sum_probs=100.2
Q ss_pred HHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCH---h-------HHHHHHHHHHhcCChHHH
Q 043370 92 QQIHAEVVKAGASLD---VGVISSLISMYSRCGCLDDSVKTFLECEY-SDV---V-------LWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 92 ~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~d~---~-------~~~~li~~~~~~g~~~~A 157 (430)
..++.+|.+.=-.|+ ..+...++-.|....+++...++.+.+.. ||. + .|.-.++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 345566665433343 34556677778888888888888877652 221 1 222223333345788888
Q ss_pred HHHHHHHHHC--CCCCCHHH-----HHHH--HHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC-HHH
Q 043370 158 INLFEQMEQK--EFEANDVT-----FVSL--LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY-LDE 227 (430)
Q Consensus 158 ~~~~~~m~~~--g~~p~~~t-----~~~l--l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~ 227 (430)
++..-.|.+. .+.||... |.-+ -+.|...+..+.|..+|++.- .+.|+...--.+.-.+..+|+ ++.
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccc
Confidence 8887777653 25677542 2222 234556677888888888764 566765432222222222221 222
Q ss_pred HHHH------HHhC-CCCCCHH----HH--HHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 228 AAAL------IRNM-PVKANAI----IW--KTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 228 A~~~------~~~m-~~~p~~~----~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
..++ +..+ +.+.... .| ...+.+-.-.+++.+|.+..+.|.+++|+.
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 1111 1111 2111110 11 234555667889999999999999999854
No 385
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=61.41 E-value=1.9e+02 Score=29.26 Aligned_cols=194 Identities=9% Similarity=0.041 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 043370 34 IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSL 113 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 113 (430)
.+....++.|+..+ +.=+.+.-.++++++.. .+ ...+..++++....|-.+...-+.+.+....+. +...-..+
T Consensus 307 ~~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~ 380 (574)
T smart00638 307 EPAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLL 380 (574)
T ss_pred cchHHHHHHHHHHH-HhCCHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHH
Confidence 33445566666544 33345666666666643 11 456667777777777655555555555444333 23323333
Q ss_pred HHHHH--hcCCHHHHHHHHhccCC----CC-------HhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCC-CCCH
Q 043370 114 ISMYS--RCGCLDDSVKTFLECEY----SD-------VVLWSSMIAAYGFHGKG------EEAINLFEQMEQKEF-EAND 173 (430)
Q Consensus 114 i~~~~--~~g~~~~A~~~~~~~~~----~d-------~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~-~p~~ 173 (430)
..... +.-..+-...+|+-+.. +. ..++.+|+.-+|..... ++..+.+.+...... .-|.
T Consensus 381 ~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 460 (574)
T smart00638 381 AVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE 460 (574)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc
Confidence 32222 22233333333332221 12 34555566655554432 344444444332211 1122
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc--CCHHHHHHHHHhC
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC--GYLDEAAALIRNM 235 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m 235 (430)
.--...|.+..+.|.......+-..+ .. ....+...-...+.++.+. ...+++..++-.+
T Consensus 461 ~~~~~~LkaLGN~g~~~~i~~l~~~l-~~-~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i 522 (574)
T smart00638 461 EEIQLYLKALGNAGHPSSIKVLEPYL-EG-AEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPI 522 (574)
T ss_pred hheeeHHHhhhccCChhHHHHHHHhc-CC-CCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 23345667777777755443333333 21 2233445555566666543 3455555544433
No 386
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.35 E-value=25 Score=30.57 Aligned_cols=117 Identities=11% Similarity=0.077 Sum_probs=69.3
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCHh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChh
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLE-HYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSA-CKTHKSTD 258 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~~~~~ 258 (430)
-|.....++.|...|.+.+ .+.|+.. -|+.-+-.+.+..+++.+..=-.+. .+.||.+--..++.. ......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3555667778887776665 4567663 4455666777777777776544333 666776665555555 55666788
Q ss_pred HHHHHHHHHhcC---CC--CCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 259 MAGRIAEEILGV---NP--QDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 259 ~a~~~~~~~~~~---~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.|+..+.+...+ .| .-......|..+=-..=...+..+++++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888877422 12 23344455554433333344455555655
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.76 E-value=65 Score=24.96 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 58 DQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 58 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
+-++.+...++.|++...-..+.+|-+.+++..|.++++-++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444445566666666666666666666666666665543
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.09 E-value=1.8e+02 Score=28.62 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHH
Q 043370 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIA 146 (430)
Q Consensus 70 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~ 146 (430)
.|.....+++..+.......-+..+-.+|+..| -+-..+..++.+|...| .+.-..+++++. -.|++.-.-|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~-n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENG-NEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 345555566666665555555555555665543 23445555666666553 233444444322 223333333443
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHh
Q 043370 147 AYGFHGKGEEAINLFEQMEQKEFEAND------VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLG 220 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 220 (430)
-|-+ ++.+.+...|.+.... +-|-. ..|.-+... -..+.|....+...+....|..--...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3433 5555555555555443 12211 122222211 023444444444444444333333334444444455
Q ss_pred hcCCHHHHHHHHHhC
Q 043370 221 RCGYLDEAAALIRNM 235 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m 235 (430)
...++++|.+++..+
T Consensus 217 ~~eN~~eai~Ilk~i 231 (711)
T COG1747 217 ENENWTEAIRILKHI 231 (711)
T ss_pred cccCHHHHHHHHHHH
Confidence 555555555555544
No 389
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.88 E-value=21 Score=32.20 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=35.5
Q ss_pred CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 137 DVV-LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181 (430)
Q Consensus 137 d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 181 (430)
|.. -||..|..-.+.||.++|+.++++.++.|+.--..||...++
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 444 466889999999999999999999999998766667665443
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.80 E-value=40 Score=28.31 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 170 EANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 170 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
.|+..+|..++.++...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555554443
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.59 E-value=1.8e+02 Score=30.16 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=24.4
Q ss_pred HHHhcCCHHHHHHHHhccCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYS-----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
-+.+.+.+++|.+.-+..... -...+...|..+.-.|++++|-...-+|..
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 344455555555555443311 123344555555555555555555555543
No 392
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.40 E-value=1.4e+02 Score=26.88 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHhccCChHHHHHHHH----HHHHcCCCCcHhHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVS-------VISSCSELATLGQGQQIHA----EVVKAGASLDVGVIS 111 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~~~g~~~~a~~~~~----~~~~~g~~~~~~~~~ 111 (430)
+..-.++.+++++|+..+.+.+..|+..|..+.+- +...|...|+...-.+... .|..-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcC-CHHHHHHHHhccCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 112 SLISMYSRCG-CLDDSVKTFLECEYS---------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 112 ~li~~~~~~g-~~~~A~~~~~~~~~~---------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
+|++.+.... .++.-.++.....+- -...-..+|..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 393
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.93 E-value=22 Score=25.64 Aligned_cols=46 Identities=17% Similarity=0.016 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCC--CChhHHHHHHHHHhccc
Q 043370 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQ--DAAPYVLLSNIHASAKR 290 (430)
Q Consensus 245 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 290 (430)
-.+-..+...|+++.|...+-.+++.+|. +...-..|+..+...|.
T Consensus 26 ~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 26 YALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 33444445555555555555554444432 33344444444444443
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.14 E-value=1.8e+02 Score=27.66 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC------CCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPI------RNVIAWITLIAGKAQNGLAEDVLDQYNLMRM 65 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 65 (430)
...-+.+-|..+|+++.|.+.+.+... .-+..|-.+|..-.-.|+|......-.+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345566777778888888888777542 2334566666666666777666666555544
No 395
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.39 E-value=1.1e+02 Score=29.16 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=7.6
Q ss_pred HhhcCCHHHHHHHHH
Q 043370 219 LGRCGYLDEAAALIR 233 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~ 233 (430)
.+..|+.+-+..+++
T Consensus 142 A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 142 AVMMGDIKGIELLID 156 (413)
T ss_pred HHHcCCHHHHHHHHh
Confidence 345566555544444
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.31 E-value=24 Score=31.76 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFV 76 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 76 (430)
-||..|....+.|+.++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35677777777777777777777777777544344443
No 397
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.20 E-value=1.9e+02 Score=27.75 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=24.5
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 141 WSSMIAAYGF---HGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 141 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444555544 46777777777777777766654443333333
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.60 E-value=15 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
.|.-..|-.+|.+|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34556688888888888877764 55666543
No 399
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.55 E-value=22 Score=36.75 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=59.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
..++++.+.+.+.-.--| .++|..+.+.|-.+-|+.+.+.=..++ +....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 455666665554432222 234555566676666665544332222 23446788888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 231 LIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 231 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
.-..+. +..+|..|.......|+.+.|+..|++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 777765 677888888888888888888888877543
No 400
>PRK14015 pepN aminopeptidase N; Provisional
Probab=55.27 E-value=3e+02 Score=29.63 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHh
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLG 220 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~ 220 (430)
|..+..++..+..+......++..... +..--.+.+.++.+.+.. +....++...++..-.|-+ .-|-++...-.
T Consensus 686 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~~-~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 761 (875)
T PRK14015 686 NVCLSYLAAADDEEAAELAEAQFDQAD---NMTDRLAALSALVNADLP-ERDEALADFYDRWKDDPLVMDKWFALQATSP 761 (875)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCC---CHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHhCCC
Confidence 344444444443333333444444432 322233444455444332 2233333333332333322 33444433333
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCh------hHHHHHHH-HHhcCCCCCChhHHHHHHHHHhccchh
Q 043370 221 RCGYLDEAAALIRNMPVKA-NAIIWKTLLSACKTHKST------DMAGRIAE-EILGVNPQDAAPYVLLSNIHASAKRWQ 292 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~------~~a~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~ 292 (430)
..+-++...++.+.=.+.+ |+--.++|+.+++..+.. ..+.+++. .++++++.|+.+-..|+..+.+-.+++
T Consensus 762 ~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~ 841 (875)
T PRK14015 762 APDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYD 841 (875)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccC
Confidence 3333444555444333332 444568899998654433 44555554 456899999999999999999999988
Q ss_pred HHHHH
Q 043370 293 GVSEF 297 (430)
Q Consensus 293 ~a~~~ 297 (430)
...+.
T Consensus 842 ~~r~~ 846 (875)
T PRK14015 842 PKRQA 846 (875)
T ss_pred HHHHH
Confidence 86653
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.09 E-value=71 Score=25.46 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=43.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 59 QYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 59 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
+...+.+.|++++.. -..++..+.+.++.-.|.++|+.+.+.++..+..|...-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 445566777776543 345666667677778899999999988877766665556677776664
No 402
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=55.03 E-value=2.2e+02 Score=27.97 Aligned_cols=241 Identities=9% Similarity=-0.020 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------hHHHHHHHHHHHHcC-C-CCcHhHHHHHHHHHHhcCCHHH
Q 043370 54 EDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT------LGQGQQIHAEVVKAG-A-SLDVGVISSLISMYSRCGCLDD 125 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~ 125 (430)
+...++|++..+. -|+...|...|..|...-. +.....+++...+.+ . +.....|..+.-++.+...-.+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3445666666553 4566666666666644322 333344444444322 2 2234556666666666654443
Q ss_pred H-HHHHhccCCCCHhHHHHHHHHHHhcC-ChHH-HHHHHHHHHHCCCCCCHHHHHHHH-HHhhhcCcHHHHHHHHHHHhh
Q 043370 126 S-VKTFLECEYSDVVLWSSMIAAYGFHG-KGEE-AINLFEQMEQKEFEANDVTFVSLL-YACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 126 A-~~~~~~~~~~d~~~~~~li~~~~~~g-~~~~-A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~ 201 (430)
+ ..+-.+.-..|...|-.-++...+.. +.+- -.++|......-..+-...+++.. .........+.....+..+
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~-- 454 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV-- 454 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh--
Confidence 3 33333444456666655444444221 2111 122233333221122222333222 0001111111112222222
Q ss_pred hcCCccCH-hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH--HhcCChhHHHHHHHHHhcCCCCCCh
Q 043370 202 KYRRKPRL-EHYTCVVDLLGRCGYLDEAAALIRNMPV--KANAIIWKTLLSAC--KTHKSTDMAGRIAEEILGVNPQDAA 276 (430)
Q Consensus 202 ~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~p~~~~ 276 (430)
..|+. ..-+.+++-+-+.|-..+|...+..+.. .|+...|.-+|.-- ...-+..-+..+++.+..--..++.
T Consensus 455 ---~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 ---IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD 531 (568)
T ss_pred ---cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH
Confidence 23333 3345677777888888888888887722 24677777776651 2222366677777777632224677
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHH
Q 043370 277 PYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 277 ~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.|.-....-...|..+.+-.++.+.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHH
Confidence 7777666666777777776665543
No 403
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.82 E-value=1.6e+02 Score=26.44 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHh-----cCChHHHHHHH
Q 043370 112 SLISMYSRCGCLDDSVKTFLECE----YSDVVLWSSMIAAYGF-----HGKGEEAINLF 161 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~-----~g~~~~A~~~~ 161 (430)
.-|-.|.|.|....+.++-.... ..+...|.+++..|.. .|.+++|.++.
T Consensus 123 LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33444555555555444443321 1233345554444433 46666666655
No 404
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.74 E-value=23 Score=23.44 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=9.1
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 043370 144 MIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m 164 (430)
+|.+|...|++++|.++.+++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444444444444444444443
No 405
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=54.32 E-value=4.8 Score=26.89 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=17.1
Q ss_pred ceEEEecCCccccccccccccC
Q 043370 406 REIIVRDASRFHHFRNGKCSCG 427 (430)
Q Consensus 406 ~~~~~~~~~~~h~f~~g~csc~ 427 (430)
..|-+.|.+..|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4566899999999999986543
No 406
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.00 E-value=2.5e+02 Score=28.32 Aligned_cols=174 Identities=10% Similarity=0.079 Sum_probs=98.9
Q ss_pred hHHHHHHHccCCCC-CHHHHHHHHH----H-HHHCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC--
Q 043370 22 LVEGEKVIRLMPIR-NVIAWITLIA----G-KAQNGLAEDVLDQYNLMRM-------VGFRPDKITFVSVISSCSELA-- 86 (430)
Q Consensus 22 ~~~A~~~f~~m~~~-~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-- 86 (430)
...|.+.++...+. ++..-..+.. + +....+.+.|+..|+.+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45666666665432 3333333332 2 4556788999999988876 44 3334555666665532
Q ss_pred ---ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHhccCCC-CHhHHHHHHHHHH----hcCChHHH
Q 043370 87 ---TLGQGQQIHAEVVKAGASLDVGVISSLISMYSR-CGCLDDSVKTFLECEYS-DVVLWSSMIAAYG----FHGKGEEA 157 (430)
Q Consensus 87 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~-d~~~~~~li~~~~----~~g~~~~A 157 (430)
+.+.|..++....+.|.+ +....-..+..... -.+...|.++|...... .+.+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 567788888888887744 44333222222222 23667888888775532 3333333333332 23477888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
..++.+.-+.| .|-..--...+..+.. +..+.+...+..+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 88888888887 4443333333444444 666666555555543
No 407
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.57 E-value=2.4e+02 Score=27.71 Aligned_cols=233 Identities=10% Similarity=0.054 Sum_probs=131.9
Q ss_pred HHHccC--CCCCHHHHHHHHHHHHHCC------ChhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHhccCCh-HHHHHHH
Q 043370 27 KVIRLM--PIRNVIAWITLIAGKAQNG------LAEDVLDQYNLMRMV-GFRPD-KITFVSVISSCSELATL-GQGQQIH 95 (430)
Q Consensus 27 ~~f~~m--~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~-g~~p~-~~t~~~ll~~~~~~g~~-~~a~~~~ 95 (430)
.+|+.. .-+....|+..|..|...- ....-+.+|+...+. +..|+ ...|..+.-.+...... +.|..+-
T Consensus 303 ~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~ 382 (568)
T KOG2396|consen 303 AVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT 382 (568)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh
Confidence 444443 2556667777666655432 334445555555443 24444 34466655555554433 2233333
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhc--------cCCCCHhHHHHHH-HHHHhcCChHHHHHHHHHHHH
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLE--------CEYSDVVLWSSMI-AAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~d~~~~~~li-~~~~~~g~~~~A~~~~~~m~~ 166 (430)
..++..+...|-.-+....+... ++.-+|.+ +..+-...|++.. ..+.+....+..+.. ...
T Consensus 383 ----~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a---~~s 453 (568)
T KOG2396|consen 383 ----TELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISA---LLS 453 (568)
T ss_pred ----HHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHH---HHH
Confidence 23344466666555554443322 22223322 2234556666655 111111112222222 222
Q ss_pred CCCCCCHHHHH-HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCC
Q 043370 167 KEFEANDVTFV-SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLL---GRCGYLDEAAALIRNM--PVKAN 240 (430)
Q Consensus 167 ~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~ 240 (430)
. ..|+..|+. .++.-+.+.|-..+|+..+..+.. -.+|+...|.-+|+.= ..+| +..+..+++.| .+-.|
T Consensus 454 ~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 454 V-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGAD 529 (568)
T ss_pred h-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCC
Confidence 2 466766654 566777888999999999999875 3456788888888753 3344 77778888877 22268
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHh-cCCC
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEIL-GVNP 272 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~p 272 (430)
+..|.-.+.--..+|..+.+-.++.++. .++|
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 8889888888789999998888877765 4555
No 408
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.30 E-value=11 Score=34.32 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=47.8
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHH
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANA-IIWKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~ 262 (430)
..|.++.|.+.|...+.. -++....|.--.+.+.+.++...|++=+... .+.||. ..|-.=-.+-+..|++++|.+
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 345555555555554431 1223333444444444455554444433332 333332 122222223334455555555
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 263 IAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 263 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.++...+++- +..+-..|-...-+.+..++-...+++-
T Consensus 204 dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 5555554443 3333333333444444444444333333
No 409
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=52.28 E-value=2.8e+02 Score=28.41 Aligned_cols=191 Identities=10% Similarity=0.118 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCC-------hhHHHHHHHHHHHCCCCCCHHHH-
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGL-------AEDVLDQYNLMRMVGFRPDKITF- 75 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~- 75 (430)
.+| ++|-.+.|+|++++|.++..... .+....+-..+..|+.+.+ -++...-|++..+.....|++-.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 455 47788999999999999993222 2333455666777766532 23445556655544322244322
Q ss_pred -HHHHHHHhccC-C-------hHHHHHHHHHHHHcCCCC-----cHhHHH---------------------HHHHHHHhc
Q 043370 76 -VSVISSCSELA-T-------LGQGQQIHAEVVKAGASL-----DVGVIS---------------------SLISMYSRC 120 (430)
Q Consensus 76 -~~ll~~~~~~g-~-------~~~a~~~~~~~~~~g~~~-----~~~~~~---------------------~li~~~~~~ 120 (430)
-.++..|--.. . .|.-..+.=.+++..... +..++. ....+..-+
T Consensus 192 vY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlLt 271 (613)
T PF04097_consen 192 VYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLYFQVLLLT 271 (613)
T ss_dssp HHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------HHHHHHHT
T ss_pred HHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHHHHHHHHH
Confidence 12222221111 0 111111111111111100 011111 123344456
Q ss_pred CCHHHHHHHHhc--cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhh---cCcHHHHHH
Q 043370 121 GCLDDSVKTFLE--CEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE-FEANDVTFVSLLYACSH---CGLKEKGME 194 (430)
Q Consensus 121 g~~~~A~~~~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~---~g~~~~a~~ 194 (430)
|+++.|.+.+-+ ....|.++....+.-|.-.+-.+... ..+.... -.|...-|..||..|.+ ..+..+|.+
T Consensus 272 gqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al~ 348 (613)
T PF04097_consen 272 GQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPREALQ 348 (613)
T ss_dssp T-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHHHHH
T ss_pred hhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHHH
Confidence 888888888777 33345555555444433322222111 2222111 01112557778877765 467888888
Q ss_pred HHHHHhh
Q 043370 195 FFDLMVK 201 (430)
Q Consensus 195 ~~~~~~~ 201 (430)
++-.+..
T Consensus 349 Y~~li~~ 355 (613)
T PF04097_consen 349 YLYLICL 355 (613)
T ss_dssp HHHGGGG
T ss_pred HHHHHHH
Confidence 8887754
No 410
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.74 E-value=12 Score=35.74 Aligned_cols=94 Identities=9% Similarity=-0.016 Sum_probs=64.7
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 043370 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT-CVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKS 256 (430)
Q Consensus 180 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 256 (430)
++.....+.++.|..++.++++ +.|+...|- .-..++.+.+++..|..=+... ...|+ ...|-.=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4555677889999999999884 567654443 3347788888888877654444 44553 3334334456777788
Q ss_pred hhHHHHHHHHHhcCCCCCCh
Q 043370 257 TDMAGRIAEEILGVNPQDAA 276 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~~~~ 276 (430)
+.+|...|+....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 88899999988889995543
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.73 E-value=1e+02 Score=23.16 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCC--C--------CHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMPI--R--------NVIAWITLIAGKAQNGLAEDVLDQYNLMRM 65 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~~--~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 65 (430)
|+|+.+|... +......+++.-.. . ...-|..|+.-|-..|..++|++++.++..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5777788777 56665555543210 0 112477788888888888888888877765
No 412
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.06 E-value=2.5e+02 Score=27.50 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=86.1
Q ss_pred hHHHHHHHccCCCCCH--H--------HHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCC--HH-----HHHHHHHH-H
Q 043370 22 LVEGEKVIRLMPIRNV--I--------AWITLIAGKAQNGLAEDVLDQYNLMRMVG-FRPD--KI-----TFVSVISS-C 82 (430)
Q Consensus 22 ~~~A~~~f~~m~~~~~--~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~-----t~~~ll~~-~ 82 (430)
-|+|+...++.++.|. . ....++..-.-.|++.+|++-...|.+-- -.|. .. ....++.. |
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 4556666666665441 1 22223334455799999999999987631 1233 11 12223333 3
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHH--HHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHH--------HHHH--HHh
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVI--SSLISMYSRCGCLDDSVKTFLECEYSDVVLWSS--------MIAA--YGF 150 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~--------li~~--~~~ 150 (430)
...+.++.|..-|....+.--.-|...+ ..+.-.|.+.|+.+.-.++++.+..++..++.+ .+.| ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4567888888877777664333343332 345667888888888888888887665433322 1111 124
Q ss_pred cCChHHHHHHHHHHHHC
Q 043370 151 HGKGEEAINLFEQMEQK 167 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~ 167 (430)
.+++.||...+++-.+.
T Consensus 458 qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKM 474 (629)
T ss_pred hccHHHHHHHHHHHHhh
Confidence 67888888888876653
No 413
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.66 E-value=1.7e+02 Score=27.06 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccC-------CCCHhHHH--HHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHH-H
Q 043370 112 SLISMYSRCGCLDDSVKTFLECE-------YSDVVLWS--SMIAAYGFHGKGEEAINLFEQMEQ-----KEFEANDVT-F 176 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~-------~~d~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t-~ 176 (430)
.++...-++++.++|.+.++++. +||.+.|- .+...+...||..++.+++.+... .|++|+..+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34444455566777777766653 34555443 345556667777777777777766 566665433 4
Q ss_pred HHHHH
Q 043370 177 VSLLY 181 (430)
Q Consensus 177 ~~ll~ 181 (430)
..+-+
T Consensus 160 Y~lss 164 (380)
T KOG2908|consen 160 YSLSS 164 (380)
T ss_pred HHHHH
Confidence 44433
No 414
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.54 E-value=1.6e+02 Score=24.99 Aligned_cols=87 Identities=7% Similarity=0.021 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHhccC-CCCHhHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 114 ISMYSRCGCLDDSVKTFLECE-YSDVVLWS-----SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~-~~d~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
...+..+|++++|...++... .+.-..+. -|.......|.+++|+.+++.....+.. ......-...+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 334555666666666555432 22111111 1233445556666666666554443221 111222334555666
Q ss_pred cHHHHHHHHHHHhhh
Q 043370 188 LKEKGMEFFDLMVKK 202 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~ 202 (430)
+-++|+.-|......
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 666666666665543
No 415
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.03 E-value=75 Score=25.22 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchh
Q 043370 225 LDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQ 292 (430)
Q Consensus 225 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 292 (430)
-+.|.++.+-|+ .....-.........|++..|..+.+.+...+|+|...-....++|...|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356777777775 23333334445778999999999999999999988888888888877666433
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.43 E-value=42 Score=22.20 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=9.5
Q ss_pred HHHHHHhccCChHHHHHHHHHH
Q 043370 77 SVISSCSELATLGQGQQIHAEV 98 (430)
Q Consensus 77 ~ll~~~~~~g~~~~a~~~~~~~ 98 (430)
.++.++...|++++|.+..+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=2.2e+02 Score=26.26 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhh---cCCccCHhHHHHHHHHH-h----hcCCHHHHHHHHHhCCC---CCCHH
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKK---YRRKPRLEHYTCVVDLL-G----RCGYLDEAAALIRNMPV---KANAI 242 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~~~-~----~~g~~~~A~~~~~~m~~---~p~~~ 242 (430)
.........|++.|+.+.|.+.+....++ .|.+.|+..+..-+..+ . -...+++|..++++-+. +.-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 44556667788888888888777665432 24445554443322222 1 22456677777777631 12234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCC-CCCChhHHHHH
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVN-PQDAAPYVLLS 282 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~ 282 (430)
+|..+- |....++..|-.+|-...... .....+|..++
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v 223 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFV 223 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHH
Confidence 554442 334456677766666654332 22344454443
No 418
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=48.94 E-value=1.6e+02 Score=24.58 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
+++|.+.|++.... .|+..+|..-+..+. +|-+++.++.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 56777777777764 788888887776653 34445555543
No 419
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.50 E-value=2.2e+02 Score=26.21 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHCC------------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 043370 36 NVIAWITLIAGKAQNG------------LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGA 103 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 103 (430)
|+.+|-.++.---..- -.+.-+.++++.++.+ +-+.......+..+.+..+.+...+.++.++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 6778877775422221 1345566666666652 33445555666666666666666666666666532
Q ss_pred CCcHhHHHHHHHHHH
Q 043370 104 SLDVGVISSLISMYS 118 (430)
Q Consensus 104 ~~~~~~~~~li~~~~ 118 (430)
. +..+|...++...
T Consensus 97 ~-~~~LW~~yL~~~q 110 (321)
T PF08424_consen 97 G-SPELWREYLDFRQ 110 (321)
T ss_pred C-ChHHHHHHHHHHH
Confidence 2 5556655555443
No 420
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.38 E-value=65 Score=19.98 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=16.6
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVI 79 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 79 (430)
+.|-..++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 421
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.76 E-value=89 Score=31.11 Aligned_cols=133 Identities=17% Similarity=0.091 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHhhhc--CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCC--CHHH
Q 043370 170 EANDVTFVSLLYACSHC--GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR-CGYLDEAAALIRNM-PVKA--NAII 243 (430)
Q Consensus 170 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p--~~~~ 243 (430)
.|+..|...++.-...- ..-+-|-.++..|.+ .+.|--...| +...|-| .|+...|.+.+... ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 45666655555433322 123345555555542 3333222222 3344544 58888888887766 3333 2233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 244 WKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
...|.....+.|....|..++.+.+.+....+-++..+.++|....+++.|.+.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 34455556677788889999999988887688999999999999999999999988765543
No 422
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=47.74 E-value=2.3e+02 Score=26.26 Aligned_cols=167 Identities=11% Similarity=0.030 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHc---CChHHHHHHHccCCCCCHHHHHHH-----HHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 7 VAGSSLAHMYMKS---GSLVEGEKVIRLMPIRNVIAWITL-----IAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 7 ~~~~~li~~~~~~---g~~~~A~~~f~~m~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
.++|+++..-... -.++.|...|..=. ....|..+ .+.+++.++-+.+..+-+.+.. -|+.+ ..++
T Consensus 130 A~fhA~v~~~L~~p~S~yye~a~~Ylsg~~--~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~---lP~~v-l~aL 203 (340)
T PF12069_consen 130 AMFHAQVRAQLGQPASQYYEHAQAYLSGQL--GWDNWQTLGLQGIADICARLDQEDNAQLLRKALPH---LPPEV-LYAL 203 (340)
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHcCCc--chhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhh---CChHH-HHHH
Confidence 4688888876653 34777888775422 25566554 5778888887776666555543 23333 3445
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC-CCCHhHHHHHHHHHHh----cC
Q 043370 79 ISSCSELATL-GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE-YSDVVLWSSMIAAYGF----HG 152 (430)
Q Consensus 79 l~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~----~g 152 (430)
..++....-. +.+..+.+.+... ||.....+++.+.+...........++.+. .+....-..++..-+| ..
T Consensus 204 ~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~ 280 (340)
T PF12069_consen 204 CGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLK 280 (340)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcC
Confidence 5555444332 3344455555444 788888889999888776665555344432 3322212223222222 23
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
+.+.....++++-. .+|...|+.+..-...
T Consensus 281 d~~~l~~fle~LA~---~~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 281 DPQLLRLFLERLAQ---QDDQALFNQLFADLVM 310 (340)
T ss_pred CHHHHHHHHHHHHc---ccHHHHHHHHHHHHHh
Confidence 45555555665554 3345666666655543
No 423
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.31 E-value=1.9e+02 Score=25.06 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=8.2
Q ss_pred hhcCCHHHHHHHHHh
Q 043370 220 GRCGYLDEAAALIRN 234 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~ 234 (430)
.|.|..++|+++.+.
T Consensus 114 iR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 114 IREGKTEEALEFAQT 128 (228)
T ss_pred HHhhhHHHHHHHHHH
Confidence 345556666665553
No 424
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.65 E-value=1.3e+02 Score=30.62 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=11.2
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHh
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
+|+.||...|++..+.++++.+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 44445555555555555444443
No 425
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=45.42 E-value=1.3e+02 Score=28.90 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 232 IRNMPVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 232 ~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
|...+++|. ..+.++-++.+.+++++..|-.+.++++++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 344455653 345667777788999999999999999999983
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.19 E-value=1.2e+02 Score=21.96 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHCCChhHHHHHHHHHH----HCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 47 KAQNGLAEDVLDQYNLMR----MVGFRPD----KITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~----~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
..+.|++.+|++.+.+.. ..+..+. ......+.......|+.++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777755554443 2222221 12222233444556677777666666554
No 427
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.16 E-value=6.2e+02 Score=30.37 Aligned_cols=82 Identities=9% Similarity=0.053 Sum_probs=37.2
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH-HHHHHhccchhHH
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL-SNIHASAKRWQGV 294 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~a 294 (430)
.....|+++.|...|+.+ +..|+ ...++-++......|.++......+-.....++....+..+ ..+-.+.++|+..
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhh
Confidence 344556666666666655 33443 44455555554455555555444443332222222222221 2222455555555
Q ss_pred HHHHH
Q 043370 295 SEFRE 299 (430)
Q Consensus 295 ~~~~~ 299 (430)
+....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 44443
No 428
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=44.84 E-value=2e+02 Score=24.69 Aligned_cols=30 Identities=3% Similarity=0.117 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 276 APYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
.....++..+.+.|++++|.+.+..+...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 455567777788888888888888876544
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.00 E-value=97 Score=27.28 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 212 YTCVVDLLGRCGYLDEAAALIRNMP--------VKANAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
.-.|..-|.+.|++++|.++|+.+. ..+...+...+..++...|+.+....+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3346666777777777777777661 1123344455666667777777766654444
No 430
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=43.69 E-value=78 Score=23.06 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=27.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHcCcccCCCCcccc
Q 043370 328 DKSHPRSMEIDLYLEELTSEMKLRGYVPDTGADMHD 363 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~ 363 (430)
...||..........++..-..+.|..|.....+..
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~~ 92 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLAV 92 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccC
Confidence 467888887777778888888899999987655443
No 431
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.55 E-value=63 Score=24.18 Aligned_cols=21 Identities=5% Similarity=0.191 Sum_probs=11.4
Q ss_pred HHHHHHHCCChhHHHHHHHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLM 63 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m 63 (430)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666665554
No 432
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.51 E-value=1.3e+02 Score=30.64 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=58.4
Q ss_pred HHHHHHHHcCChHHHHHHHccCCC------CCHHHHHHHHHHHHHCCChh------HHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMPI------RNVIAWITLIAGKAQNGLAE------DVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
+|..+|..+|++-.+.++++.... .=...+|..|+.+.++|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 799999999999999999987642 23568999999999999875 3333443333 55688899888
Q ss_pred HHHHhccCChHHHHHHHHH
Q 043370 79 ISSCSELATLGQGQQIHAE 97 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~ 97 (430)
+.+....-+-..+.-++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~ 128 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHE 128 (1117)
T ss_pred HHhhcChHhHHhccHHHHH
Confidence 8776554333333333333
No 433
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=42.97 E-value=3.1e+02 Score=26.35 Aligned_cols=234 Identities=12% Similarity=-0.017 Sum_probs=110.8
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 44 IAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 44 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
|+++...| ..++..+....... ++...+.....++....+ ..+...+-.... .++..+......++.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~-~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQED-ALDLRSVLAVLQ---AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCC-hHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCch
Confidence 66666677 45666666665432 233333333344432222 222222222222 23555677777777777776
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc
Q 043370 124 DDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 124 ~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 203 (430)
+....+..-...++...-.+.+.++...+. ++...+....+ .+|...-...+.++...+..+ +...+..+..
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~-a~~~L~~al~-- 188 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRL-SESTLRLYLR-- 188 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhcccc-chHHHHHHHc--
Confidence 666665555555666555555566655442 23333333333 345555555566665555432 2223333322
Q ss_pred CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 204 RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 204 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
.++..+-..-+.+....|. ++|...+...-..|+......+.......|. +.+...+..+.+- +.+-...+.
T Consensus 189 --d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d----~~vr~~a~~ 260 (410)
T TIGR02270 189 --DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA----AATRREALR 260 (410)
T ss_pred --CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC----hhhHHHHHH
Confidence 2455555556666666666 5555554442112232222233323322222 2444444433321 113444455
Q ss_pred HHHhccchhHHHHHHHHH
Q 043370 284 IHASAKRWQGVSEFREAM 301 (430)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m 301 (430)
++...|+...+.-+.+.|
T Consensus 261 AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 261 AVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHcCCcchHHHHHHHh
Confidence 555555555444444444
No 434
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.80 E-value=3.9e+02 Score=27.33 Aligned_cols=80 Identities=9% Similarity=0.083 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhC------CCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHh----cC--C----CCCChhHHHHHHH
Q 043370 223 GYLDEAAALIRNM------PVKANAIIWKTLLSAC--KTHKSTDMAGRIAEEIL----GV--N----PQDAAPYVLLSNI 284 (430)
Q Consensus 223 g~~~~A~~~~~~m------~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~----~~--~----p~~~~~~~~l~~~ 284 (430)
++...|.+.++.+ ...|...++-.++.+. ...+..+++.+.++++. .. + ++...+|..++..
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 5555565555544 1122333344444442 23344455555555442 11 1 2233455556555
Q ss_pred H--HhccchhHHHHHHHHHH
Q 043370 285 H--ASAKRWQGVSEFREAMR 302 (430)
Q Consensus 285 ~--~~~g~~~~a~~~~~~m~ 302 (430)
+ ...|+++.+...++.+.
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 4 46666667766666553
No 435
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.70 E-value=44 Score=30.30 Aligned_cols=76 Identities=7% Similarity=0.019 Sum_probs=47.3
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH-HHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLL-SACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
|+..|...+.--.+.|.+.+.-.+|.+. ...| |+..|-.-- .-+..+++++.+..+|.+.++.+|.+|..|....+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 4445554444444445555555565555 3344 555664321 12667889999999999999999988887765443
No 436
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.30 E-value=1.6e+02 Score=23.46 Aligned_cols=61 Identities=7% Similarity=0.264 Sum_probs=39.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 62 LMRMVGFRPDKITFVSVISSCSEL-ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 62 ~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|...-++.+.+.|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456677655443 3444444443 45668889999988887766766666667777777654
No 437
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.17 E-value=4.2e+02 Score=27.55 Aligned_cols=119 Identities=11% Similarity=0.063 Sum_probs=60.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 147 AYGFHGKGEEAINLFEQMEQKEFEAND--VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
++..-|+-++|..+.++|.... .|-. .-..++..+|+-.|+.....+++.-...+ ...|+.-+....-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEecC
Confidence 3444566677778888877653 2211 11224555677777777767666665542 23344444444444555556
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHhc
Q 043370 225 LDEAAALIRNM--PVKANAIIWKTLLS--ACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 225 ~~~A~~~~~~m--~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~ 269 (430)
.+....+..-+ ..+|.+..-.++.- +|+-.| ..+|..+++.|..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 66555555544 23343332222222 244444 3556666665543
No 438
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.92 E-value=60 Score=28.16 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 221 RCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
+.|+.+.|.+++.+. ...| ....|-.+-..--+.|+.+.|.+.+++.++++|
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 344444444444444 2222 344444444444455555555555555554444
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.70 E-value=1.6e+02 Score=24.64 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=10.8
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 043370 217 DLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m 235 (430)
-.|.+.|.+++|.+++++.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHhcCchHHHHHHHHHH
Confidence 3455556666666665555
No 440
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.26 E-value=1.9e+02 Score=25.50 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=58.3
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCCHHHHHH-----------HHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 218 LLGRCGYLDEAAALIRNM---------PVKANAIIWKT-----------LLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~-----------ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
-+.+.|++.+|..-+++. ..+|...-|.- .-.++...|++-++++.-.+++...|.|..+
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345566666666555433 33454443322 2233456788888888888889999999999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|..-..+.+..=+..+|..=+....+
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 98888888777777778777776654
No 441
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=40.74 E-value=3.5e+02 Score=26.23 Aligned_cols=102 Identities=11% Similarity=-0.016 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEE
Q 043370 244 WKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQ 323 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~ 323 (430)
...|+.-|...|++.+|.+..+++---.-+....+.+++.+..+.|+-.....+++..-+.|+ +.++.....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl--------IT~nQMtkG 583 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL--------ITTNQMTKG 583 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc--------eeHHHhhhh
Confidence 345777888899999998888775322224567788899999998887777777777766665 222222222
Q ss_pred EEeCCCCCC----CchHHHHHHHHHHHHHHHcCc
Q 043370 324 FTMGDKSHP----RSMEIDLYLEELTSEMKLRGY 353 (430)
Q Consensus 324 ~~~~~~~~~----~~~~~~~~l~~l~~~m~~~g~ 353 (430)
|-.-+.+-| ....++.+++...++-.+.|+
T Consensus 584 f~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~ 617 (645)
T KOG0403|consen 584 FERVYDSLPDLSLDVPNAYEKFERYVEECFQNGI 617 (645)
T ss_pred hhhhhccCcccccCCCcHHHHHHHHHHHHHHcCc
Confidence 211111111 223456666677776666663
No 442
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=40.60 E-value=5e+02 Score=27.96 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHHHh
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDLLG 220 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~ 220 (430)
|..+..++..++.+......++..+.+ +..--.+.+.++.+.+. .+....++...++..-.|-+ .-|-++...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 445555555554433333344444432 22223344444444333 22233344443332333322 33444433322
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------hhHHHHHH-HHHhcCCCCCChhHHHHHHHHHhccchh
Q 043370 221 RCGYLDEAAALIRNMPVKA-NAIIWKTLLSACKTHKS------TDMAGRIA-EEILGVNPQDAAPYVLLSNIHASAKRWQ 292 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~------~~~a~~~~-~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 292 (430)
..+-++...++...-.+.+ |+--..+|+.+++..+. -..+.+++ +.++++++.|+.+-..|+..+.+-.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 3333444444443333332 44456888988864332 23444444 4556899999999999999999999998
Q ss_pred HHHHH
Q 043370 293 GVSEF 297 (430)
Q Consensus 293 ~a~~~ 297 (430)
...+.
T Consensus 832 ~~r~~ 836 (863)
T TIGR02414 832 PKRQE 836 (863)
T ss_pred HHHHH
Confidence 87653
No 443
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=39.88 E-value=61 Score=29.36 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 221 RCGYLDEAAALIRNM-PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
+.|+.++|..+|+.. ...|+ +....-+..-.-.++++-+|.+++-+.+...|.|..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 456666666666544 33332 2222222222333455566666666666666655444
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.30 E-value=2.1e+02 Score=25.13 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCC----ccCHhHHHHHHHHHhhcCCHHHHHHH
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRR----KPRLEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
.+...|.+.|++++|.++|+.+...+.- .+...+...+..++.+.|+.++...+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445566667777777766666544332 22344455556666666666665554
No 445
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.01 E-value=74 Score=21.34 Aligned_cols=48 Identities=19% Similarity=0.041 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
+....++.|+..+++..-.++++..+.++.+.| ..+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344556666666666666666666666666665 344555554444443
No 446
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=39.00 E-value=1.3e+02 Score=20.85 Aligned_cols=63 Identities=3% Similarity=-0.018 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043370 34 IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA 101 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 101 (430)
.+|...-...+....+.+ -.+++..+.++.+ .+|...-...+.++.+.|+ +++...+.++...
T Consensus 11 ~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG-DPEAIPALIELLK---DEDPMVRRAAARALGRIGD-PEAIPALIKLLQD 73 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHT---SSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcC
Confidence 555555555666666665 3466777777763 4677888888888888875 4556666665554
No 447
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=38.60 E-value=71 Score=22.38 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=10.0
Q ss_pred HHHHcCChHHHHHHHcc
Q 043370 15 MYMKSGSLVEGEKVIRL 31 (430)
Q Consensus 15 ~~~~~g~~~~A~~~f~~ 31 (430)
..++.|+++-...+++.
T Consensus 3 ~A~~~~~~~~~~~ll~~ 19 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEK 19 (89)
T ss_dssp HHHHTTTHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHC
Confidence 34556666666666663
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.34 E-value=3.6e+02 Score=25.64 Aligned_cols=55 Identities=2% Similarity=-0.111 Sum_probs=33.2
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHHc
Q 043370 46 GKAQNGLAEDVLDQYNLMRMVGFRPDKI--TFVSVISSCS--ELATLGQGQQIHAEVVKA 101 (430)
Q Consensus 46 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 101 (430)
.+...++|..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344777888888888888776 555444 2333333332 345666777777766553
No 449
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.01 E-value=1.7e+02 Score=27.94 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-----------CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEY-----------SDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
...|+..++-.|++..|+++++.+.- -.+.++.-+.-+|.-.+++.+|++.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999887641 144566677778888899999999988764
No 450
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=37.98 E-value=26 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=18.2
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCHH
Q 043370 50 NGLAEDVLDQYNLMRMVG-FRPDKI 73 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g-~~p~~~ 73 (430)
+=+++.|+..|.++...| ++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 347899999999998765 666543
No 451
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.97 E-value=5.5e+02 Score=27.41 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=71.6
Q ss_pred HcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043370 18 KSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAE 97 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 97 (430)
.+|+++.|++.-..+. |..+|..|...-...|+.+-|.-.|++.+.- .-|--.|.-.|+.++-.++..-
T Consensus 655 e~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred hcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHH
Confidence 4555555555544443 4556888888777888877777777766532 1122223345666665555544
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 98 VVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 98 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+...+ |. +-.-...+| .|++++-.++++.....+..-.. -..+|.-++|.++.++....
T Consensus 724 ae~r~---D~-~~~~qnalY--l~dv~ervkIl~n~g~~~laylt-----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 724 AEIRN---DA-TGQFQNALY--LGDVKERVKILENGGQLPLAYLT-----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHhhh---hh-HHHHHHHHH--hccHHHHHHHHHhcCcccHHHHH-----HhhcCcHHHHHHHHHhhccc
Confidence 33221 21 111122222 47778877887766544332222 13467788999998887663
No 452
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.91 E-value=1.9e+02 Score=23.06 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=45.4
Q ss_pred hHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043370 22 LVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT 87 (430)
Q Consensus 22 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 87 (430)
..++.+.++.-.-+-+..-..++..+.+.++.-.|.++++++.+.+...+..|.-..+..+...|-
T Consensus 5 ~~~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344555555544444455567888888888889999999999998766666676556666655553
No 453
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.29 E-value=3.4e+02 Score=24.85 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
++++.|.+.++.|.-..|..+.-.+++.=.+.+...+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4556666666666666666665556666666666666666654
No 454
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.09 E-value=1.1e+02 Score=20.49 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=17.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 168 (430)
....++.++..++...-.++++..+.+....|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445555555555555555555555555554
No 455
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.00 E-value=1.7e+02 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=18.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 043370 136 SDVVLWSSMIAAYGFHGKGEEAINLFE 162 (430)
Q Consensus 136 ~d~~~~~~li~~~~~~g~~~~A~~~~~ 162 (430)
-|+..|..+..||.-.|+.+.+.+-+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 467777777777777776665554433
No 456
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.90 E-value=2.9e+02 Score=23.95 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=55.8
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 141 WSSMIAAY--GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 141 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
|...+.|+ ..++++++|++++-.- .+.|+-. ..++.++...|+.+.|..+++.+.. ...+...-..+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 44445544 3456677777666321 1222221 1356666667777777777776531 11222333333333
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043370 219 LGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 255 (430)
..++.+.+|..+.+.....-....|..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 555777788777776643222346666666655443
No 457
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.89 E-value=1.1e+02 Score=30.91 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
+.....-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.++|+......
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~ 459 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTR 459 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHH
Confidence 334444455555555555555555544322211 11223344444555555544433
No 458
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.73 E-value=4e+02 Score=25.47 Aligned_cols=59 Identities=15% Similarity=0.306 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECEY------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
..+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|......-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566788899999999999999988542 1234455666666667777777776666554
No 459
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.49 E-value=3.2e+02 Score=26.83 Aligned_cols=139 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC------------CHhHHHHHHH
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS------------DVVLWSSMIA 146 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------d~~~~~~li~ 146 (430)
+.++.+..++..+..-.+......-. +....-.--..+.-.|++.+|.+.+....-. .-..||.|.-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~-s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQD-SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCC-CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHhcCChHHHHHHHHHHHH-------CCCCCCH----------HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH
Q 043370 147 AYGFHGKGEEAINLFEQMEQ-------KEFEAND----------VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL 209 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~-------~g~~p~~----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 209 (430)
.+.+.|.+..+..+|.+..+ .|++|.. .......-.+.+.|++-.|.+.|....+ -...++
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--vfh~nP 369 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--VFHRNP 369 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--HHhcCc
Q ss_pred hHHHHHHHHHh
Q 043370 210 EHYTCVVDLLG 220 (430)
Q Consensus 210 ~~~~~li~~~~ 220 (430)
..|--|.+++.
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
No 460
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.40 E-value=5.9e+02 Score=27.31 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCC
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMP 33 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~ 33 (430)
|..|+..|...|..++|+++|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh
Confidence 4556666666666666666665544
No 461
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.38 E-value=2.3e+02 Score=22.49 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHhhhcC---cHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 170 EANDVTFVSLLYACSHCG---LKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 170 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.++..+-..+..++.++. ++.++..+++.+.++ . .| .....--|.-++.|.++++++.++.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 445555555555555544 455667777777652 1 22 2233334455667777777777776655
No 462
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.01 E-value=4.8e+02 Score=26.21 Aligned_cols=118 Identities=20% Similarity=0.192 Sum_probs=76.4
Q ss_pred hcCcHHHHHHHHHHHhhhcCC-------cc---CHhHHHHHHHHHhhcCCHHHHHHHHHhC----------CC-------
Q 043370 185 HCGLKEKGMEFFDLMVKKYRR-------KP---RLEHYTCVVDLLGRCGYLDEAAALIRNM----------PV------- 237 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~-------~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~------- 237 (430)
+...++++..-|......+.. .. .+.+.-.+.+++-..|+.+.|.+++++. .+
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 455667777777666543211 11 2334445556677788877776666543 11
Q ss_pred -----CC-CHHHHHHHH---HHHHhcCChhHHHHHHHHHhcCCCC-CChhHHHHHHHHH-hccchhHHHHHHHHHH
Q 043370 238 -----KA-NAIIWKTLL---SACKTHKSTDMAGRIAEEILGVNPQ-DAAPYVLLSNIHA-SAKRWQGVSEFREAMR 302 (430)
Q Consensus 238 -----~p-~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 302 (430)
.| |-..|-+|- ..+.+.|-+..|.+..+.+..++|. ||.....+++.|+ ++.+|.=-+++++.-+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12 333343332 3467788999999999999999987 8888888888885 6777777777777664
No 463
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.72 E-value=2.3e+02 Score=26.28 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=54.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc
Q 043370 216 VDLLGRCGYLDEAAALIRNM-P---VKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK 289 (430)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 289 (430)
..-|.+..++..|...|.+- . -.| +.+.|+.=..+-.-.|++..|+.=..+.+..+|.+...|..=..++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 33456667777777777654 1 112 35556555555555677777777777777888877777777777777777
Q ss_pred chhHHHHHHHH
Q 043370 290 RWQGVSEFREA 300 (430)
Q Consensus 290 ~~~~a~~~~~~ 300 (430)
++++|....++
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 76666555444
No 464
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.36 E-value=2.9e+02 Score=23.40 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=36.5
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhc-------------CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKY-------------RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+++..|-+.-++.+++.+++.|.+-. +..+--..-|.-...+.++|.+|.|..++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 45556667777777777777664320 12233345566667777788888887777754
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.28 E-value=1.8e+02 Score=23.94 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH
Q 043370 165 EQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 165 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 225 (430)
...|++++..-. .++......+..-.|.++++.+.+. +...+..|----++.+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 344554444322 3333333334444555666666544 3333443333334455555554
No 466
>PF14044 NETI: NETI protein
Probab=34.14 E-value=38 Score=21.83 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCcccCCC
Q 043370 341 LEELTSEMKLRGYVPDTG 358 (430)
Q Consensus 341 l~~l~~~m~~~g~~p~~~ 358 (430)
+.+-+.+|++.||.|-..
T Consensus 10 I~~CL~RM~~eGY~PvrR 27 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVRR 27 (57)
T ss_pred HHHHHHHHHHcCCCceee
Confidence 347889999999998543
No 467
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.97 E-value=3.5e+02 Score=24.26 Aligned_cols=202 Identities=9% Similarity=0.029 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHH-HHHCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHH---cCCC--
Q 043370 34 IRNVIAWITLIAG-KAQNGLAEDVLDQYNLMRMVGFRPDK---ITFVSVISSCSELATLGQGQQIHAEVVK---AGAS-- 104 (430)
Q Consensus 34 ~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~g~~-- 104 (430)
+||+..-|..-.+ -.+...+++|++-|++.++..-..-. .....++....+.+++++....+.+++. +.+.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 5676554433222 12445899999999999874212222 2345578888999999999888887743 2222
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CC
Q 043370 105 LDVGVISSLISMYSRCGCLDDSVKTFLECE-----YSDVV----LWSSMIAAYGFHGKGEEAINLFEQMEQKEF----EA 171 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~d~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p 171 (430)
-+....|++++.-+...+.+--...++.-. .++.. |-+.+...|...|.+.+..++++++...-. ..
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 234566788887777777776666655422 12222 223466677777788888888887765311 11
Q ss_pred C-------HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHH----HHHHhhcCCHHHHHH-HHHhC
Q 043370 172 N-------DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCV----VDLLGRCGYLDEAAA-LIRNM 235 (430)
Q Consensus 172 ~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~-~~~~m 235 (430)
| ...|..=|..|....+-..-..++++.......-|.+.....+ ..+..+.|++++|-. +|+..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 1345556667777777777777887766443344544332222 223456788888754 44444
No 468
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.53 E-value=2.1e+02 Score=22.14 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=32.4
Q ss_pred hHHHHHHHHHh--cCCCCCChhHHHHHHHHHhccchhHHHHHHH
Q 043370 258 DMAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 258 ~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+....+|..|. +++..-+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567788886 3445567778888899999999999999886
No 469
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.83 E-value=1.1e+02 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=10.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccC
Q 043370 113 LISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~ 134 (430)
++.-|...|+.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3444444455555555555543
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.70 E-value=1.8e+02 Score=23.81 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=40.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 043370 63 MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124 (430)
Q Consensus 63 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 124 (430)
+.+.|++++..-. .++..+......-.|.++++.+.+.+...+..|...-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4456766555443 444555445556678888888888887777776666778888777653
No 471
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.48 E-value=98 Score=17.43 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=16.4
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 256 STDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
.++.|..+|++.+...| ++.+|...
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 35677777777777666 56665543
No 472
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.31 E-value=2.2e+02 Score=27.44 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMPIR---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
..|+.-|.-.|++.+|.+..+.+.-| ..+.+.+++.+.-+.|+-..-+.++++.-..|+ .|-+.+-.++
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhh
Confidence 34667777788888888877766544 456777788777777777777777777766653 3444444444
No 473
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.90 E-value=95 Score=26.99 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=49.7
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 251 CKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..+.++.+.|.+++.+.+++-|.....|..+...-.++|+++.|.+.+++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999999999999999999886644
No 474
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.78 E-value=4.4e+02 Score=24.75 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=40.4
Q ss_pred HHHHhhhcCc---HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 043370 179 LLYACSHCGL---KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVK 238 (430)
Q Consensus 179 ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (430)
++..+...++ +-+|..+++..... -+.+...--.++..|...|-.+.|.+.|..+.++
T Consensus 186 Ll~~~~~~~~~~~l~~Ai~lLE~~l~~--s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK 246 (365)
T PF09797_consen 186 LLDLYSKTKDSEYLLQAIALLEHALKK--SPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIK 246 (365)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChH
Confidence 3333444444 44667777776653 2345566667899999999999999999999665
No 475
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.48 E-value=2.2e+02 Score=21.17 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHHHCCChhHHHHHHHHHH
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMR 64 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~ 64 (430)
.++..|...+++++|...+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555666666666666666553
No 476
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=31.26 E-value=50 Score=20.33 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCcccC
Q 043370 342 EELTSEMKLRGYVPD 356 (430)
Q Consensus 342 ~~l~~~m~~~g~~p~ 356 (430)
+++.+.+++.||.||
T Consensus 32 ~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 32 ERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHCCCCC
Confidence 477888889999996
No 477
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.17 E-value=3.7e+02 Score=23.71 Aligned_cols=78 Identities=10% Similarity=-0.047 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHhccC--CCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhhcCcHHHHHHH
Q 043370 120 CGCLDDSVKTFLECE--YSDV-VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV-SLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~--~~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~ 195 (430)
...++.|...|-+.. .|.+ .-|+.=+..+.+..+++.+..=-+..++ +.||.+--. .+..+......+++|...
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 344555555554322 3333 2233444455555555555544444333 344443222 222333444445555555
Q ss_pred HHHH
Q 043370 196 FDLM 199 (430)
Q Consensus 196 ~~~~ 199 (430)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 4443
No 478
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.01 E-value=1.6e+02 Score=29.83 Aligned_cols=84 Identities=11% Similarity=0.039 Sum_probs=65.0
Q ss_pred hcCCHHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchh
Q 043370 221 RCGYLDEAAALIRN-MPVKA-N------AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQ 292 (430)
Q Consensus 221 ~~g~~~~A~~~~~~-m~~~p-~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 292 (430)
+..++..+.++|.. |..-| | ....+.|--+|....+.+.|.++++++.+.+|.++.+-..+..+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 45667777777654 32222 1 2345666667888899999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHhC
Q 043370 293 GVSEFREAMRER 304 (430)
Q Consensus 293 ~a~~~~~~m~~~ 304 (430)
+|..+.......
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 999988877543
No 479
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.77 E-value=1.1e+02 Score=21.10 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=28.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
...|+.+.+.+++++....|..|.......+.-+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346889999999999998888887776666665554433
No 480
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.39 E-value=2.1e+02 Score=20.54 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 043370 93 QIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLEC 133 (430)
Q Consensus 93 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 133 (430)
++|+.....|+..|..+|..+++...-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555555555555555555544444444444444443
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.93 E-value=3.3e+02 Score=23.12 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH-HHHHHhccchhHHHHHHHHHH
Q 043370 243 IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL-SNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 243 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~ 302 (430)
..+.++..|...||++.|.++|.-++...+.|....-.+ +..+.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 345666667777777777777777776554444433322 444445444444445555553
No 482
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.86 E-value=2.1e+02 Score=20.53 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=11.8
Q ss_pred HHhhhcCcHHHHHHHHHHHhh
Q 043370 181 YACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~ 201 (430)
......|..++|...+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334455666666666665543
No 483
>PRK11619 lytic murein transglycosylase; Provisional
Probab=29.61 E-value=6.5e+02 Score=26.01 Aligned_cols=224 Identities=9% Similarity=-0.073 Sum_probs=118.3
Q ss_pred CChHHHHHHHHHHHHcC-CCCc--HhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHhHHHHHHHHHHhcCChHHHHHH
Q 043370 86 ATLGQGQQIHAEVVKAG-ASLD--VGVISSLISMYSRCGCLDDSVKTFLECEYS--DVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
.+.+.|..++....+.. +.+. ..+...+..-.+..+..++|...++..... |...+.--+..-.+.++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 45577777777654332 2222 122333333333332255666666654322 333333334444477788888777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc-----------CCccC------HhH--------HHHH
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY-----------RRKPR------LEH--------YTCV 215 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----------~~~p~------~~~--------~~~l 215 (430)
+..|.... .-...-.--+..+....|+.++|..+|+.+.... |.++. ... -..-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 77774432 2233334456666666788888888877764321 11100 000 1112
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC---CCCChhHHHHHHHHHhccchh
Q 043370 216 VDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN---PQDAAPYVLLSNIHASAKRWQ 292 (430)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 292 (430)
+..+...|...+|...+..+-...+......+.......|..+.+..........+ -.-+..|.-.+..+...-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34455667888887777766223455555555555677788888877665443211 012345666677776666666
Q ss_pred HHHHHHHHHHhCCCCCCC
Q 043370 293 GVSEFREAMRERNVKKEP 310 (430)
Q Consensus 293 ~a~~~~~~m~~~g~~~~~ 310 (430)
.+.-.--...+.++.|..
T Consensus 494 ~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 494 QSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHHHhcCCCCCC
Confidence 655332233466665553
No 484
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=29.38 E-value=69 Score=22.47 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHcCcccCCCCcc
Q 043370 334 SMEIDLYLEELTSEMKLRGYVPDTGADM 361 (430)
Q Consensus 334 ~~~~~~~l~~l~~~m~~~g~~p~~~~~~ 361 (430)
..++...+++-..+++..|+.||...+-
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~G 34 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLVG 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE-
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 3456777788889999999999976543
No 485
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.14 E-value=8.3e+02 Score=27.12 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=60.6
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-------------------C-----------C--HhHHHHHHHHHHhcCChHHHHHH
Q 043370 113 LISMYSRCGCLDDSVKTFLECEY-------------------S-----------D--VVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~~-------------------~-----------d--~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
+.-+|..+|...+|...|.+... + . ..-|-..++.+-+++..+++.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34457788888888888865421 0 1 12345567777777777777777
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHH
Q 043370 161 FEQMEQKEFEAN----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLD 226 (430)
Q Consensus 161 ~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 226 (430)
-...++. ++|| ..+++.+.+-....|.+-+|...+-.-.. ..--..+...++-.+..+|.++
T Consensus 1006 A~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd---serrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1006 AVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD---SERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHhccchH
Confidence 7666654 2332 23455555555566666555444322110 0111234455666666666654
No 486
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.06 E-value=1.5e+02 Score=22.28 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=31.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcH
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 189 (430)
++..+...+..-.|.++++.+.+.+..++..|....|..+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566667888888888777667777766677777766654
No 487
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=28.97 E-value=1.2e+02 Score=17.43 Aligned_cols=14 Identities=14% Similarity=-0.076 Sum_probs=6.5
Q ss_pred HHHhcCChhHHHHH
Q 043370 250 ACKTHKSTDMAGRI 263 (430)
Q Consensus 250 ~~~~~~~~~~a~~~ 263 (430)
.+-..|+.++|..+
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 34445555555555
No 488
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.72 E-value=2.2e+02 Score=20.38 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
++|+-....|+..|...|..++....-.--.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777777777777766555566666666666654
No 489
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.62 E-value=1.1e+02 Score=21.79 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=38.2
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 043370 27 KVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQG 91 (430)
Q Consensus 27 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 91 (430)
.+++.+.+.++.+....-..-....+.++|.++++.+...| ..+|.....++-..|....|
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 35555555556555555555556667788888888777765 35666666666666654444
No 490
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.54 E-value=3.9e+02 Score=23.16 Aligned_cols=133 Identities=9% Similarity=0.052 Sum_probs=76.4
Q ss_pred HcCCCCcHhHHHHHHHHH--HhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 100 KAGASLDVGVISSLISMY--SRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 100 ~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
..++++. +..++.++ ...+++++|.+.+-+-.-. .....-++.++...|+.+.|+.+++.+.-... +.....
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~ 145 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALT 145 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHH
Confidence 3445543 44455554 4557788888887543211 11122477888889999999999987643322 222233
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAII 243 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 243 (430)
.++.+ ...+.+.+|+.+-+...+. -....+..++..+.....-....+.+-.+|+.+....
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~ 206 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQ 206 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHH
Confidence 33333 5568899998887765432 1145666777766644433334445555676655443
No 491
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=28.48 E-value=69 Score=24.09 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHcCcccCCCCc
Q 043370 337 IDLYLEELTSEMKLRGYVPDTGAD 360 (430)
Q Consensus 337 ~~~~l~~l~~~m~~~g~~p~~~~~ 360 (430)
.+..=+.+.++|.+.||.|+..+.
T Consensus 50 L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 50 LFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHcCCCCChhhc
Confidence 344446788999999999998655
No 492
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=28.44 E-value=5.4e+02 Score=24.76 Aligned_cols=230 Identities=10% Similarity=-0.042 Sum_probs=110.3
Q ss_pred HHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 043370 13 AHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQ 90 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 90 (430)
|+++...| +.+...+-... .++...+-....++.. ++-..+++.+-+... .++...-..+..++...+..+.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~-~~~~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i~~~~a 118 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLA-QEDALDLRSVLAVLQ---AGPEGLCAGIQAALGWLGGRQA 118 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhc-cCChHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCchHH
Confidence 66677777 45555443332 2333333333333332 232333333333333 3455567777788777776555
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043370 91 GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170 (430)
Q Consensus 91 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 170 (430)
...+.. +.+. ++..+..+.+.+....+. +....+..-+..+|...-..-+.++...++. ++...+..+.. .
T Consensus 119 ~~~L~~-~L~~---~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-~a~~~L~~al~---d 189 (410)
T TIGR02270 119 EPWLEP-LLAA---SEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRR-LSESTLRLYLR---D 189 (410)
T ss_pred HHHHHH-HhcC---CChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-cchHHHHHHHc---C
Confidence 544443 3332 244455555566654442 2122222233355665556666666666653 34444444433 3
Q ss_pred CCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043370 171 ANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSA 250 (430)
Q Consensus 171 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 250 (430)
+|...=...+.+....|. ++|...+...... ++..+.-.+...+...|. +++.+.+...--+++ +-...+.+
T Consensus 190 ~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~----~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d~~--vr~~a~~A 261 (410)
T TIGR02270 190 SDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL----EGGPHRQRLLVLLAVAGG-PDAQAWLRELLQAAA--TRREALRA 261 (410)
T ss_pred CCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc----cCccHHHHHHHHHHhCCc-hhHHHHHHHHhcChh--hHHHHHHH
Confidence 455555666666677776 5555555543222 222233333333333332 255555554422333 44455556
Q ss_pred HHhcCChhHHHHHHH
Q 043370 251 CKTHKSTDMAGRIAE 265 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~ 265 (430)
+.+.|+.....-+.+
T Consensus 262 lG~lg~p~av~~L~~ 276 (410)
T TIGR02270 262 VGLVGDVEAAPWCLE 276 (410)
T ss_pred HHHcCCcchHHHHHH
Confidence 666666554444433
No 493
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.97 E-value=2.3e+02 Score=20.35 Aligned_cols=66 Identities=6% Similarity=0.007 Sum_probs=41.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 56 VLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 56 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
+-++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. .|.. .+..++++....|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhh
Confidence 45667777777742 33333333333335678888888888887 5533 6777888888887766554
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.85 E-value=1.7e+02 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 18 sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 18 TAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444444443333333333444444444
No 495
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=3.8e+02 Score=22.69 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=26.8
Q ss_pred HHHhcCCHHHHHHHHhccCC------CCHhHHHHHHH-HHHhcCC--hHHHHHHHHHHHHC
Q 043370 116 MYSRCGCLDDSVKTFLECEY------SDVVLWSSMIA-AYGFHGK--GEEAINLFEQMEQK 167 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~------~d~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 167 (430)
.....|++++|.+-++++.+ +-...|..+.. +++.++. +-+|.-++.-+...
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 33445666666666665432 12334444444 5555553 44666666555443
No 496
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.48 E-value=2.3e+02 Score=20.12 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=20.4
Q ss_pred CCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChH
Q 043370 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGE 155 (430)
Q Consensus 121 g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 155 (430)
.+.+.|.++++.++.++..+|.+...++-..|...
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34556666666666666666666666665555433
No 497
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.18 E-value=1.1e+02 Score=27.87 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=33.9
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA 239 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 239 (430)
.+.|+.++|..+|+.... +.|+ +....-+.......+++-+|-.++-+. .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 478999999999998874 4553 444444444444556666777766555 4444
No 498
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.86 E-value=4.6e+02 Score=23.41 Aligned_cols=84 Identities=10% Similarity=0.013 Sum_probs=42.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CHhHHHHHHHHHHh----cCCh
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECEYS-DVVLWSSMIAAYGF----HGKG 154 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-d~~~~~~li~~~~~----~g~~ 154 (430)
..+++..+...+......+ +......+..+|.. ..+...|.+.|...... .......|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 4456666767666665533 22334444444433 23455666666644332 33334444444443 2256
Q ss_pred HHHHHHHHHHHHCCCC
Q 043370 155 EEAINLFEQMEQKEFE 170 (430)
Q Consensus 155 ~~A~~~~~~m~~~g~~ 170 (430)
.+|...|++..+.|..
T Consensus 130 ~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 130 VKALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 6666666666666533
No 499
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.54 E-value=5.1e+02 Score=27.05 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
+-..|+-.|....+++..+++.+.+++
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh
Confidence 344455566666666666777666665
No 500
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.10 E-value=1.3e+02 Score=22.79 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 189 (430)
.+++..+...+..-.|.++++.|.+.|...+..|.-..|..+...|.+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 346666667777788888999988888777777766666777666643
Done!