Query 043370
Match_columns 430
No_of_seqs 563 out of 3394
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.1E-31 3.7E-36 260.3 23.9 197 25-222 9-223 (501)
2 2xpi_A Anaphase-promoting comp 100.0 2.9E-30 1E-34 258.2 26.6 293 7-304 273-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.3E-30 1.1E-34 249.9 23.0 200 54-254 7-223 (501)
4 2xpi_A Anaphase-promoting comp 100.0 1.7E-29 5.9E-34 252.6 25.7 342 3-357 114-514 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 9.3E-24 3.2E-28 199.7 34.2 295 4-303 65-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.9E-23 2E-27 194.2 31.5 294 5-304 32-334 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 6.6E-23 2.3E-27 197.5 31.5 295 4-304 24-358 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 2.5E-21 8.7E-26 186.4 31.2 273 4-284 58-372 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 1E-19 3.5E-24 169.2 35.5 296 5-304 2-335 (359)
10 3hym_B Cell division cycle pro 99.9 8.8E-20 3E-24 167.7 28.0 286 3-291 19-321 (330)
11 2gw1_A Mitochondrial precursor 99.9 1.3E-19 4.5E-24 177.2 27.8 297 3-303 36-477 (514)
12 2gw1_A Mitochondrial precursor 99.9 1.3E-19 4.6E-24 177.2 27.2 294 6-304 6-401 (514)
13 3hym_B Cell division cycle pro 99.8 1E-18 3.5E-23 160.6 26.4 264 35-303 20-298 (330)
14 3ieg_A DNAJ homolog subfamily 99.8 5.4E-18 1.8E-22 157.4 30.3 282 4-289 35-354 (359)
15 1fch_A Peroxisomal targeting s 99.8 9E-19 3.1E-23 163.8 23.8 281 15-299 34-354 (368)
16 1b89_A Protein (clathrin heavy 99.8 4.2E-20 1.4E-24 171.8 11.7 241 17-288 14-254 (449)
17 3fp2_A TPR repeat-containing p 99.8 1.4E-17 4.7E-22 163.9 29.4 226 75-305 246-492 (537)
18 4eqf_A PEX5-related protein; a 99.8 1.1E-18 3.9E-23 163.2 20.4 261 36-300 64-352 (365)
19 3fp2_A TPR repeat-containing p 99.8 9.3E-18 3.2E-22 165.1 27.3 294 6-305 25-408 (537)
20 3mkr_A Coatomer subunit epsilo 99.8 4.7E-17 1.6E-21 147.2 29.4 270 14-297 7-287 (291)
21 3cv0_A Peroxisome targeting si 99.8 1.2E-17 4.2E-22 153.1 22.9 259 37-300 21-311 (327)
22 4eqf_A PEX5-related protein; a 99.8 4.7E-18 1.6E-22 159.0 20.0 258 5-266 64-352 (365)
23 1fch_A Peroxisomal targeting s 99.8 1.2E-17 4.1E-22 156.1 21.0 276 20-304 15-314 (368)
24 1b89_A Protein (clathrin heavy 99.8 7E-19 2.4E-23 163.7 11.3 266 4-297 30-304 (449)
25 3spa_A Mtrpol, DNA-directed RN 99.8 2.5E-19 8.6E-24 179.3 8.8 147 6-152 127-286 (1134)
26 3cv0_A Peroxisome targeting si 99.8 7.3E-17 2.5E-21 147.9 22.5 260 5-269 20-314 (327)
27 3mkr_A Coatomer subunit epsilo 99.8 8.1E-17 2.8E-21 145.7 21.9 246 44-304 6-264 (291)
28 3spa_A Mtrpol, DNA-directed RN 99.8 8.3E-19 2.9E-23 175.6 9.3 129 106-235 126-262 (1134)
29 3uq3_A Heat shock protein STI1 99.7 9.7E-16 3.3E-20 135.3 19.2 223 37-271 5-237 (258)
30 3uq3_A Heat shock protein STI1 99.7 5.8E-15 2E-19 130.3 22.2 220 72-304 5-236 (258)
31 1xnf_A Lipoprotein NLPI; TPR, 99.7 8.1E-15 2.8E-19 130.8 22.4 241 49-298 17-269 (275)
32 3u4t_A TPR repeat-containing p 99.7 9.9E-15 3.4E-19 130.2 20.8 239 10-287 7-267 (272)
33 2pl2_A Hypothetical conserved 99.7 6.5E-15 2.2E-19 127.2 18.9 195 104-302 2-212 (217)
34 2h6f_A Protein farnesyltransfe 99.6 1.9E-14 6.6E-19 134.6 22.4 246 36-287 96-365 (382)
35 2pl2_A Hypothetical conserved 99.6 2.1E-14 7.2E-19 123.9 21.0 194 36-235 4-211 (217)
36 4g1t_A Interferon-induced prot 99.6 7E-14 2.4E-18 135.2 26.6 297 6-307 94-462 (472)
37 2xm6_A Protein corresponding t 99.6 1.2E-12 4E-17 127.4 34.4 283 8-305 77-397 (490)
38 2xm6_A Protein corresponding t 99.6 3.1E-12 1E-16 124.5 36.0 286 5-305 38-361 (490)
39 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5.1E-18 121.1 23.4 205 37-276 37-244 (252)
40 2ho1_A Type 4 fimbrial biogene 99.6 2.1E-13 7.3E-18 120.0 24.4 195 6-202 37-238 (252)
41 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.4E-18 122.9 22.8 195 5-202 36-250 (272)
42 1ouv_A Conserved hypothetical 99.6 6.1E-13 2.1E-17 118.8 27.2 223 36-272 5-253 (273)
43 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.5E-14 1.2E-18 126.6 19.0 239 17-264 16-269 (275)
44 2q7f_A YRRB protein; TPR, prot 99.6 2.5E-14 8.5E-19 125.2 17.3 212 37-284 23-236 (243)
45 2vq2_A PILW, putative fimbrial 99.6 2.7E-13 9.2E-18 116.8 23.3 206 37-277 8-218 (225)
46 2ooe_A Cleavage stimulation fa 99.6 1.2E-12 4.1E-17 128.7 30.8 165 138-305 272-455 (530)
47 2vq2_A PILW, putative fimbrial 99.6 3E-13 1E-17 116.6 22.5 197 5-202 7-211 (225)
48 3sf4_A G-protein-signaling mod 99.6 8.7E-14 3E-18 131.4 20.1 265 37-302 9-334 (406)
49 4a1s_A PINS, partner of inscut 99.6 4.5E-14 1.5E-18 133.9 18.1 265 38-303 49-371 (411)
50 1ouv_A Conserved hypothetical 99.6 1.9E-12 6.4E-17 115.7 27.5 223 71-305 5-252 (273)
51 3ro2_A PINS homolog, G-protein 99.6 1.7E-13 5.7E-18 125.5 19.9 265 39-304 7-332 (338)
52 3sf4_A G-protein-signaling mod 99.6 4.1E-14 1.4E-18 133.6 15.5 291 3-293 6-365 (406)
53 2h6f_A Protein farnesyltransfe 99.6 6.9E-13 2.3E-17 124.1 23.5 241 6-252 97-364 (382)
54 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4E-18 120.8 16.9 197 106-305 22-223 (243)
55 2ooe_A Cleavage stimulation fa 99.5 1.1E-11 3.6E-16 121.9 32.0 194 106-304 271-492 (530)
56 4g1t_A Interferon-induced prot 99.5 4.5E-12 1.5E-16 122.5 27.6 295 6-304 51-401 (472)
57 1xi4_A Clathrin heavy chain; a 99.5 1E-11 3.5E-16 128.8 30.7 263 6-296 1105-1376(1630)
58 2ond_A Cleavage stimulation fa 99.5 8.3E-12 2.9E-16 113.7 26.0 218 54-275 33-275 (308)
59 4a1s_A PINS, partner of inscut 99.5 2.5E-13 8.6E-18 128.7 16.1 265 8-272 50-374 (411)
60 3ro2_A PINS homolog, G-protein 99.5 4.4E-13 1.5E-17 122.7 16.5 266 7-272 6-334 (338)
61 4abn_A Tetratricopeptide repea 99.5 3.6E-13 1.2E-17 130.4 16.4 208 88-300 84-317 (474)
62 1xi4_A Clathrin heavy chain; a 99.5 2.3E-11 7.9E-16 126.2 30.2 238 20-288 1090-1327(1630)
63 3vtx_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 106.6 19.0 162 139-303 6-169 (184)
64 3ulq_A Response regulator aspa 99.5 1.7E-12 5.9E-17 122.0 18.5 285 16-303 22-367 (383)
65 2ond_A Cleavage stimulation fa 99.5 9.2E-12 3.1E-16 113.4 22.3 227 6-235 8-267 (308)
66 3nf1_A KLC 1, kinesin light ch 99.5 2.7E-13 9.3E-18 123.0 11.4 166 36-201 26-223 (311)
67 3nf1_A KLC 1, kinesin light ch 99.4 5.5E-13 1.9E-17 121.0 12.7 246 5-272 26-309 (311)
68 3vtx_A MAMA; tetratricopeptide 99.4 2.1E-11 7E-16 101.8 20.6 161 37-200 5-168 (184)
69 3e4b_A ALGK; tetratricopeptide 99.4 8.3E-12 2.8E-16 120.0 19.4 189 108-306 142-353 (452)
70 3q15_A PSP28, response regulat 99.4 1.7E-11 5.9E-16 115.0 19.8 301 2-303 6-364 (378)
71 4abn_A Tetratricopeptide repea 99.4 7.6E-12 2.6E-16 121.1 17.8 208 53-266 84-317 (474)
72 1hz4_A MALT regulatory protein 99.4 4.4E-10 1.5E-14 105.0 28.6 263 41-303 18-321 (373)
73 4gyw_A UDP-N-acetylglucosamine 99.4 1.6E-11 5.5E-16 123.9 18.0 161 138-302 9-172 (723)
74 3as5_A MAMA; tetratricopeptide 99.4 3.9E-11 1.3E-15 99.6 16.9 163 107-272 8-175 (186)
75 3as5_A MAMA; tetratricopeptide 99.3 2.6E-10 8.7E-15 94.6 21.1 157 7-165 9-171 (186)
76 3ulq_A Response regulator aspa 99.3 1.3E-10 4.4E-15 109.2 21.1 228 43-270 109-368 (383)
77 4i17_A Hypothetical protein; T 99.3 1E-10 3.5E-15 101.3 18.5 205 69-284 4-223 (228)
78 1hz4_A MALT regulatory protein 99.3 1E-09 3.6E-14 102.4 23.6 263 9-271 17-323 (373)
79 4i17_A Hypothetical protein; T 99.3 2.8E-10 9.7E-15 98.4 17.8 190 105-304 5-209 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.2 2.6E-10 8.9E-15 115.1 19.2 159 38-199 10-171 (723)
81 3edt_B KLC 2, kinesin light ch 99.2 6.4E-11 2.2E-15 105.5 12.5 153 49-201 13-197 (283)
82 3e4b_A ALGK; tetratricopeptide 99.2 1.6E-09 5.4E-14 104.1 22.7 281 7-306 36-389 (452)
83 1qqe_A Vesicular transport pro 99.2 3.5E-10 1.2E-14 102.0 17.1 191 82-272 47-271 (292)
84 3q15_A PSP28, response regulat 99.2 1.9E-09 6.4E-14 101.0 22.1 228 42-270 106-365 (378)
85 3edt_B KLC 2, kinesin light ch 99.2 6.2E-10 2.1E-14 99.0 17.4 149 18-166 13-197 (283)
86 1qqe_A Vesicular transport pro 99.1 4.9E-09 1.7E-13 94.5 20.6 205 22-240 33-272 (292)
87 3qky_A Outer membrane assembly 99.1 7.2E-09 2.5E-13 91.6 21.0 205 106-351 14-248 (261)
88 3qky_A Outer membrane assembly 99.1 3.4E-09 1.2E-13 93.7 17.3 202 69-292 12-249 (261)
89 3mv2_B Coatomer subunit epsilo 99.1 7.9E-09 2.7E-13 92.2 19.2 239 17-277 24-289 (310)
90 3mv2_B Coatomer subunit epsilo 99.1 1.6E-08 5.3E-13 90.3 21.0 239 45-305 21-283 (310)
91 2fo7_A Synthetic consensus TPR 99.1 6.1E-09 2.1E-13 81.0 16.3 126 39-166 3-131 (136)
92 2fo7_A Synthetic consensus TPR 99.1 5.7E-09 1.9E-13 81.2 15.3 130 140-272 3-134 (136)
93 3urz_A Uncharacterized protein 99.0 1.5E-08 5E-13 86.4 17.5 25 42-66 9-33 (208)
94 3qou_A Protein YBBN; thioredox 99.0 7.6E-09 2.6E-13 93.0 16.0 175 123-301 102-281 (287)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.2E-08 1.1E-12 85.4 18.9 181 106-306 3-215 (225)
96 2pzi_A Probable serine/threoni 99.0 1.5E-08 5E-13 102.5 19.2 167 48-221 402-580 (681)
97 4ga2_A E3 SUMO-protein ligase 99.0 5.8E-10 2E-14 89.8 6.7 140 147-290 6-149 (150)
98 2ifu_A Gamma-SNAP; membrane fu 99.0 1.3E-08 4.5E-13 92.3 16.4 217 50-296 4-253 (307)
99 2pzi_A Probable serine/threoni 99.0 2.1E-08 7.2E-13 101.3 19.4 190 83-277 402-609 (681)
100 3qou_A Protein YBBN; thioredox 99.0 4.2E-08 1.4E-12 88.1 18.9 161 71-233 116-279 (287)
101 3urz_A Uncharacterized protein 98.9 4.6E-08 1.6E-12 83.3 17.0 187 75-283 7-198 (208)
102 3dra_A Protein farnesyltransfe 98.9 1.4E-06 4.7E-11 78.3 26.2 231 47-282 42-300 (306)
103 2vsy_A XCC0866; transferase, g 98.9 2.7E-08 9.4E-13 98.4 16.1 159 121-282 3-169 (568)
104 2r5s_A Uncharacterized protein 98.9 4.1E-08 1.4E-12 81.1 14.6 156 7-165 7-171 (176)
105 2r5s_A Uncharacterized protein 98.9 1.9E-08 6.6E-13 83.1 12.5 155 110-301 9-170 (176)
106 3rjv_A Putative SEL1 repeat pr 98.9 1.7E-07 6E-12 79.9 18.9 160 137-305 17-198 (212)
107 2vsy_A XCC0866; transferase, g 98.9 1.7E-08 5.9E-13 99.9 14.3 152 151-305 2-158 (568)
108 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.5E-12 80.1 18.2 159 35-202 16-197 (212)
109 3dra_A Protein farnesyltransfe 98.8 7.4E-07 2.5E-11 80.1 22.0 214 86-303 47-286 (306)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2E-07 6.8E-12 79.2 17.3 145 110-274 9-154 (213)
111 4ga2_A E3 SUMO-protein ligase 98.8 8.2E-09 2.8E-13 83.0 7.9 122 179-303 3-128 (150)
112 4e6h_A MRNA 3'-END-processing 98.8 4.8E-07 1.6E-11 90.4 22.2 242 38-285 303-584 (679)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.8E-07 9.5E-12 79.4 18.2 184 71-275 3-218 (225)
114 4e6h_A MRNA 3'-END-processing 98.8 2.9E-06 9.8E-11 84.8 26.7 113 4-116 64-194 (679)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 2.6E-08 9E-13 90.3 11.1 197 84-302 3-222 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3E-07 1E-11 78.1 16.6 143 8-167 8-150 (213)
117 2qfc_A PLCR protein; TPR, HTH, 98.7 4.2E-07 1.4E-11 81.7 17.3 164 139-302 76-264 (293)
118 3u3w_A Transcriptional activat 98.7 1.2E-06 4.1E-11 78.6 20.3 159 144-302 81-264 (293)
119 3gyz_A Chaperone protein IPGC; 98.7 5.2E-08 1.8E-12 78.2 9.7 102 204-305 30-134 (151)
120 2c2l_A CHIP, carboxy terminus 98.7 6.4E-08 2.2E-12 86.6 10.7 186 108-303 5-198 (281)
121 2vgx_A Chaperone SYCD; alterna 98.7 6.2E-08 2.1E-12 77.5 9.2 97 208-304 20-118 (148)
122 3u3w_A Transcriptional activat 98.7 2.7E-06 9.1E-11 76.4 20.9 158 43-200 81-264 (293)
123 3gw4_A Uncharacterized protein 98.7 1.8E-07 6E-12 78.7 12.3 116 17-132 3-132 (203)
124 4gco_A Protein STI-1; structur 98.7 1.8E-07 6.2E-12 72.5 11.1 107 175-283 15-123 (126)
125 3q7a_A Farnesyltransferase alp 98.6 2.8E-05 9.5E-10 70.7 26.1 236 39-279 56-341 (349)
126 1a17_A Serine/threonine protei 98.6 1.1E-06 3.8E-11 71.0 15.5 124 38-163 14-142 (166)
127 4f3v_A ESX-1 secretion system 98.6 1.4E-06 4.7E-11 76.7 16.8 182 49-235 18-234 (282)
128 3gyz_A Chaperone protein IPGC; 98.6 2.1E-07 7.2E-12 74.6 10.8 92 38-131 37-128 (151)
129 1a17_A Serine/threonine protei 98.6 6.2E-07 2.1E-11 72.5 13.9 125 176-302 16-144 (166)
130 1na0_A Designed protein CTPR3; 98.6 5E-07 1.7E-11 68.9 12.2 113 174-288 10-124 (125)
131 2qfc_A PLCR protein; TPR, HTH, 98.6 2.9E-06 9.9E-11 76.1 18.7 161 74-234 77-262 (293)
132 4gco_A Protein STI-1; structur 98.6 2.8E-07 9.6E-12 71.4 10.2 100 205-304 8-110 (126)
133 2xcb_A PCRH, regulatory protei 98.6 3.9E-07 1.3E-11 72.1 11.1 97 208-304 17-115 (142)
134 1p5q_A FKBP52, FK506-binding p 98.6 2.6E-07 8.8E-12 84.9 11.4 94 209-302 196-292 (336)
135 2vyi_A SGTA protein; chaperone 98.6 4.4E-07 1.5E-11 69.9 11.2 116 174-291 13-130 (131)
136 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.8E-11 66.3 13.9 95 37-133 9-103 (125)
137 2lni_A Stress-induced-phosphop 98.6 6.8E-07 2.3E-11 69.2 12.1 112 176-289 19-132 (133)
138 2c2l_A CHIP, carboxy terminus 98.6 1.9E-07 6.5E-12 83.5 9.4 189 36-235 3-196 (281)
139 4f3v_A ESX-1 secretion system 98.6 1.5E-06 5.1E-11 76.5 14.8 192 84-281 18-247 (282)
140 3gw4_A Uncharacterized protein 98.6 8.3E-07 2.8E-11 74.5 12.8 80 84-164 4-92 (203)
141 2lni_A Stress-induced-phosphop 98.5 2.7E-06 9.1E-11 65.8 14.0 114 36-151 15-131 (133)
142 2vyi_A SGTA protein; chaperone 98.5 2.7E-06 9.1E-11 65.4 13.9 115 37-153 12-129 (131)
143 2e2e_A Formate-dependent nitri 98.5 6.7E-07 2.3E-11 73.6 10.4 127 149-278 21-152 (177)
144 2fbn_A 70 kDa peptidylprolyl i 98.5 1.2E-07 4.1E-12 79.8 5.7 174 111-305 8-187 (198)
145 3q7a_A Farnesyltransferase alp 98.5 1.8E-05 6.3E-10 71.9 20.4 216 84-303 66-330 (349)
146 3dss_A Geranylgeranyl transfer 98.5 3.7E-05 1.3E-09 69.5 22.2 241 37-284 26-318 (331)
147 2e2e_A Formate-dependent nitri 98.5 9.5E-07 3.2E-11 72.7 10.8 118 48-167 21-144 (177)
148 2uy1_A Cleavage stimulation fa 98.5 0.00013 4.6E-09 70.3 27.4 284 7-301 16-380 (493)
149 3upv_A Heat shock protein STI1 98.5 8.9E-07 3E-11 68.3 9.5 94 210-303 5-100 (126)
150 2fbn_A 70 kDa peptidylprolyl i 98.5 5.4E-07 1.9E-11 75.8 8.7 149 8-158 6-176 (198)
151 2kck_A TPR repeat; tetratricop 98.4 1.7E-06 5.9E-11 64.5 10.2 97 209-305 6-107 (112)
152 2vgx_A Chaperone SYCD; alterna 98.4 1.6E-06 5.5E-11 69.2 10.5 91 109-200 23-116 (148)
153 1p5q_A FKBP52, FK506-binding p 98.4 4.1E-06 1.4E-10 76.8 14.6 142 36-199 146-291 (336)
154 1elw_A TPR1-domain of HOP; HOP 98.4 6E-06 2.1E-10 62.1 12.9 106 176-283 7-114 (118)
155 1hxi_A PEX5, peroxisome target 98.4 1.2E-06 4E-11 67.3 8.6 94 211-304 19-114 (121)
156 3sz7_A HSC70 cochaperone (SGT) 98.4 1.7E-06 5.9E-11 70.2 9.4 104 173-278 11-116 (164)
157 3upv_A Heat shock protein STI1 98.3 2.9E-06 1E-10 65.3 10.1 92 178-271 9-102 (126)
158 3q49_B STIP1 homology and U bo 98.3 4.3E-06 1.5E-10 65.2 11.2 96 208-303 8-105 (137)
159 2xcb_A PCRH, regulatory protei 98.3 2.5E-06 8.4E-11 67.4 9.7 100 177-278 22-123 (142)
160 2dba_A Smooth muscle cell asso 98.3 9.6E-06 3.3E-10 63.9 13.1 75 210-284 66-142 (148)
161 3sz7_A HSC70 cochaperone (SGT) 98.3 4.2E-06 1.4E-10 67.8 11.2 96 137-235 10-105 (164)
162 2dba_A Smooth muscle cell asso 98.3 6.7E-06 2.3E-10 64.8 11.6 97 208-304 27-128 (148)
163 4b4t_Q 26S proteasome regulato 98.3 2.5E-05 8.6E-10 73.9 17.6 191 45-235 12-242 (434)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.6E-06 2.3E-10 78.9 13.5 95 209-303 317-414 (457)
165 1elw_A TPR1-domain of HOP; HOP 98.3 5.5E-06 1.9E-10 62.3 10.5 97 208-304 3-101 (118)
166 3dss_A Geranylgeranyl transfer 98.3 0.0002 6.9E-09 64.7 21.6 217 84-304 41-304 (331)
167 4gcn_A Protein STI-1; structur 98.3 1.5E-05 5.3E-10 61.5 12.5 27 140-166 85-111 (127)
168 3q49_B STIP1 homology and U bo 98.3 2E-05 6.9E-10 61.3 13.3 94 36-131 8-101 (137)
169 1wao_1 Serine/threonine protei 98.2 2E-05 6.7E-10 76.0 14.9 118 113-233 12-134 (477)
170 4gcn_A Protein STI-1; structur 98.2 2.1E-05 7.1E-10 60.7 12.2 59 141-200 11-69 (127)
171 2kck_A TPR repeat; tetratricop 98.2 1.5E-05 5.1E-10 59.2 10.8 95 7-102 7-107 (112)
172 1wao_1 Serine/threonine protei 98.2 4.3E-06 1.5E-10 80.6 9.7 114 184-299 17-134 (477)
173 2uy1_A Cleavage stimulation fa 98.2 0.0006 2E-08 65.8 24.4 238 90-357 197-455 (493)
174 1elr_A TPR2A-domain of HOP; HO 98.2 1.6E-05 5.4E-10 60.9 11.0 61 39-100 6-66 (131)
175 1elr_A TPR2A-domain of HOP; HO 98.2 8E-06 2.8E-10 62.7 9.2 62 139-201 5-66 (131)
176 1hxi_A PEX5, peroxisome target 98.2 1.5E-05 5.1E-10 61.0 10.4 92 40-133 20-111 (121)
177 4b4t_Q 26S proteasome regulato 98.2 6.7E-05 2.3E-09 70.9 16.9 191 79-269 11-244 (434)
178 1ihg_A Cyclophilin 40; ppiase 98.1 2.1E-05 7.2E-10 73.0 12.5 90 208-297 272-363 (370)
179 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.4E-10 63.4 10.2 62 38-99 10-76 (164)
180 2xev_A YBGF; tetratricopeptide 98.1 9.2E-06 3.2E-10 62.5 8.1 59 244-302 42-103 (129)
181 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.9E-10 63.2 10.0 25 141-165 12-36 (164)
182 2xev_A YBGF; tetratricopeptide 98.1 4.4E-05 1.5E-09 58.6 11.6 94 182-277 11-112 (129)
183 2if4_A ATFKBP42; FKBP-like, al 98.1 6.8E-06 2.3E-10 75.4 7.5 147 138-304 179-328 (338)
184 2hr2_A Hypothetical protein; a 98.1 1.5E-05 5.1E-10 63.5 8.4 62 242-303 58-130 (159)
185 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.7E-10 72.8 9.9 149 107-274 179-332 (338)
186 3rkv_A Putative peptidylprolyl 98.0 1.4E-05 4.7E-10 64.6 8.1 63 241-303 63-125 (162)
187 3rkv_A Putative peptidylprolyl 98.0 1.8E-05 6.2E-10 63.9 8.8 67 209-275 63-131 (162)
188 3k9i_A BH0479 protein; putativ 98.0 4.4E-06 1.5E-10 63.5 4.7 88 186-274 3-94 (117)
189 3k9i_A BH0479 protein; putativ 98.0 5.8E-06 2E-10 62.8 4.8 84 150-235 2-87 (117)
190 1dce_A Protein (RAB geranylger 98.0 0.0004 1.4E-08 68.2 18.8 167 124-293 46-244 (567)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.3E-05 2.5E-09 71.5 12.9 144 20-165 248-413 (457)
192 1ihg_A Cyclophilin 40; ppiase 97.9 7.5E-05 2.6E-09 69.3 12.1 84 73-157 274-360 (370)
193 2hr2_A Hypothetical protein; a 97.9 1.8E-05 6.3E-10 62.9 6.3 69 211-279 59-140 (159)
194 3n71_A Histone lysine methyltr 97.9 8.5E-05 2.9E-09 71.3 11.8 124 182-305 318-465 (490)
195 2l6j_A TPR repeat-containing p 97.8 5.1E-05 1.8E-09 56.4 7.7 92 208-299 3-102 (111)
196 2l6j_A TPR repeat-containing p 97.8 3.2E-05 1.1E-09 57.5 5.9 97 36-134 3-105 (111)
197 1na3_A Designed protein CTPR2; 97.7 0.00012 4.2E-09 52.0 8.0 81 209-289 9-91 (91)
198 3ma5_A Tetratricopeptide repea 97.7 0.00018 6.2E-09 52.6 8.3 64 240-303 6-69 (100)
199 2kat_A Uncharacterized protein 97.7 9.7E-05 3.3E-09 55.5 6.9 76 228-303 4-81 (115)
200 1klx_A Cysteine rich protein B 97.7 0.0011 3.7E-08 51.8 13.0 109 52-168 10-127 (138)
201 1na3_A Designed protein CTPR2; 97.6 0.00083 2.8E-08 47.5 10.9 82 37-120 9-90 (91)
202 3n71_A Histone lysine methyltr 97.6 0.00037 1.2E-08 66.9 10.9 123 147-269 318-463 (490)
203 1dce_A Protein (RAB geranylger 97.5 0.0075 2.6E-07 59.1 19.2 168 52-224 44-241 (567)
204 2kat_A Uncharacterized protein 97.5 0.0008 2.7E-08 50.3 9.6 76 55-132 3-78 (115)
205 1zu2_A Mitochondrial import re 97.5 8.2E-05 2.8E-09 59.1 3.8 84 221-304 14-120 (158)
206 3ma5_A Tetratricopeptide repea 97.4 0.00073 2.5E-08 49.3 8.7 63 137-200 6-68 (100)
207 3mkq_A Coatomer beta'-subunit; 97.4 0.0099 3.4E-07 60.9 19.4 46 117-164 662-707 (814)
208 1klx_A Cysteine rich protein B 97.3 0.0032 1.1E-07 49.0 11.7 111 152-271 9-127 (138)
209 3qwp_A SET and MYND domain-con 97.3 0.00043 1.5E-08 65.3 7.5 116 216-349 294-427 (429)
210 1zu2_A Mitochondrial import re 97.2 0.00057 2E-08 54.2 6.2 110 49-182 14-133 (158)
211 3bee_A Putative YFRE protein; 97.2 0.0018 6.3E-08 46.5 8.4 68 239-306 4-74 (93)
212 3mkq_A Coatomer beta'-subunit; 97.0 0.052 1.8E-06 55.5 20.4 168 15-236 608-776 (814)
213 3ly7_A Transcriptional activat 97.0 0.036 1.2E-06 50.4 16.2 136 135-272 191-341 (372)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0061 2.1E-07 43.8 8.2 64 215-278 6-72 (99)
215 3ly7_A Transcriptional activat 96.8 0.024 8.3E-07 51.5 13.5 72 136-212 275-346 (372)
216 3qww_A SET and MYND domain-con 96.8 0.0024 8.2E-08 60.2 7.2 83 221-303 310-410 (433)
217 3qwp_A SET and MYND domain-con 96.7 0.018 6.2E-07 54.2 13.0 101 178-278 292-413 (429)
218 2kc7_A BFR218_protein; tetratr 96.7 0.012 4E-07 42.2 9.0 58 44-102 7-65 (99)
219 3qww_A SET and MYND domain-con 96.7 0.009 3.1E-07 56.3 10.3 93 185-277 310-423 (433)
220 1wy6_A Hypothetical protein ST 96.3 0.24 8.4E-06 37.5 16.0 139 150-307 19-157 (172)
221 3bee_A Putative YFRE protein; 96.2 0.033 1.1E-06 39.8 8.5 67 207-273 4-75 (93)
222 1pc2_A Mitochondria fission pr 96.1 0.036 1.2E-06 43.4 9.2 44 258-301 52-97 (152)
223 2v5f_A Prolyl 4-hydroxylase su 95.9 0.038 1.3E-06 40.3 8.3 71 210-280 6-85 (104)
224 3mkq_B Coatomer subunit alpha; 95.9 0.32 1.1E-05 39.0 14.1 128 116-267 14-141 (177)
225 3lvg_A Clathrin heavy chain 1; 95.8 3.4E-06 1.2E-10 78.1 -17.2 261 7-296 55-325 (624)
226 1pc2_A Mitochondria fission pr 95.8 0.035 1.2E-06 43.5 7.6 87 190-278 15-108 (152)
227 1qsa_A Protein (soluble lytic 95.6 2 6.8E-05 42.2 25.4 249 10-269 76-347 (618)
228 3u64_A Protein TP_0956; tetrat 95.5 0.048 1.6E-06 47.6 8.0 83 225-307 179-272 (301)
229 3u64_A Protein TP_0956; tetrat 95.2 0.85 2.9E-05 39.8 15.1 112 119-235 133-266 (301)
230 3mkq_B Coatomer subunit alpha; 95.0 1.1 3.8E-05 35.9 16.9 127 83-236 16-142 (177)
231 1wy6_A Hypothetical protein ST 94.3 1.3 4.4E-05 33.7 13.8 85 119-206 73-157 (172)
232 2v5f_A Prolyl 4-hydroxylase su 94.2 0.54 1.8E-05 33.9 10.0 63 39-101 7-75 (104)
233 1nzn_A CGI-135 protein, fissio 93.8 0.61 2.1E-05 35.0 9.6 72 207-278 33-111 (126)
234 1nzn_A CGI-135 protein, fissio 93.7 0.47 1.6E-05 35.6 8.8 89 239-353 33-126 (126)
235 2p58_C Putative type III secre 93.5 1.2 4.2E-05 31.5 9.9 88 85-177 20-107 (116)
236 4gns_B Protein CSD3, chitin bi 93.4 0.35 1.2E-05 48.5 9.9 122 177-301 252-397 (754)
237 2uwj_G Type III export protein 93.3 1.1 3.9E-05 31.6 9.4 88 86-178 20-107 (115)
238 2wpv_A GET4, UPF0363 protein Y 93.0 4.5 0.00015 35.8 19.5 143 45-202 61-217 (312)
239 4h7y_A Dual specificity protei 93.0 1.2 4.3E-05 34.4 10.1 38 134-172 9-52 (161)
240 4h7y_A Dual specificity protei 92.9 2.4 8.3E-05 32.8 11.6 96 34-131 10-118 (161)
241 3lvg_A Clathrin heavy chain 1; 92.2 1.9E-06 6.4E-11 79.8 -27.1 232 36-297 53-284 (624)
242 3lpz_A GET4 (YOR164C homolog); 91.8 6.8 0.00023 34.9 21.8 142 45-201 63-215 (336)
243 2ff4_A Probable regulatory pro 91.7 0.35 1.2E-05 44.7 7.1 68 245-312 175-247 (388)
244 1v54_E Cytochrome C oxidase po 91.5 1.3 4.3E-05 31.6 7.9 63 153-217 25-87 (109)
245 4fhn_B Nucleoporin NUP120; pro 91.2 6.8 0.00023 41.7 17.1 165 9-191 815-989 (1139)
246 4gns_B Protein CSD3, chitin bi 90.0 2.1 7.1E-05 43.0 11.1 124 10-134 252-398 (754)
247 4ady_A RPN2, 26S proteasome re 89.1 5.9 0.0002 40.7 13.6 152 113-268 496-656 (963)
248 2ff4_A Probable regulatory pro 88.9 2.4 8.2E-05 39.0 10.1 54 44-98 178-231 (388)
249 2uwj_G Type III export protein 88.8 1.8 6E-05 30.7 6.7 50 16-67 49-98 (115)
250 4b4t_P 26S proteasome regulato 88.7 5.3 0.00018 37.5 12.5 180 121-302 30-245 (445)
251 2p58_C Putative type III secre 88.7 1.9 6.5E-05 30.6 6.8 48 47-100 50-97 (116)
252 4ady_A RPN2, 26S proteasome re 88.1 26 0.00088 36.1 20.7 20 147-166 569-588 (963)
253 2y69_E Cytochrome C oxidase su 88.0 2.3 7.9E-05 32.1 7.3 63 153-217 68-130 (152)
254 4fhn_B Nucleoporin NUP120; pro 87.9 14 0.00048 39.4 16.5 118 106-226 841-988 (1139)
255 4b4t_P 26S proteasome regulato 87.7 18 0.00062 33.8 18.4 185 51-235 30-244 (445)
256 3ffl_A Anaphase-promoting comp 87.4 3.3 0.00011 32.6 8.4 29 209-237 122-150 (167)
257 1v54_E Cytochrome C oxidase po 87.4 3.2 0.00011 29.5 7.4 60 55-115 28-87 (109)
258 3ltj_A Alpharep-4; protein eng 87.4 10 0.00035 30.6 18.7 182 25-223 16-197 (201)
259 1y8m_A FIS1; mitochondria, unk 87.2 8.4 0.00029 29.4 12.7 25 250-274 86-110 (144)
260 3ffl_A Anaphase-promoting comp 87.1 7.5 0.00026 30.6 10.2 29 106-134 121-149 (167)
261 3lpz_A GET4 (YOR164C homolog); 85.7 19 0.00065 32.1 22.3 164 109-303 37-215 (336)
262 3ltm_A Alpha-REP4; protein eng 85.6 13 0.00045 30.2 18.5 188 20-224 16-203 (211)
263 3txn_A 26S proteasome regulato 84.8 23 0.0008 32.4 15.9 128 73-200 20-166 (394)
264 3ltm_A Alpha-REP4; protein eng 84.1 16 0.00053 29.7 19.7 185 54-255 18-202 (211)
265 3ltj_A Alpharep-4; protein eng 82.3 18 0.00061 29.1 18.9 171 70-254 26-196 (201)
266 1zbp_A Hypothetical protein VP 82.0 17 0.00058 31.2 11.0 52 148-200 7-58 (273)
267 2y69_E Cytochrome C oxidase su 80.2 8.5 0.00029 29.1 7.4 44 56-99 72-115 (152)
268 3o48_A Mitochondria fission 1 79.6 18 0.0006 27.3 9.2 31 247-277 84-114 (134)
269 3o48_A Mitochondria fission 1 72.6 20 0.00069 27.0 7.8 23 144-166 84-106 (134)
270 2wpv_A GET4, UPF0363 protein Y 71.9 52 0.0018 28.9 22.6 168 108-303 34-216 (312)
271 1zbp_A Hypothetical protein VP 70.8 8.7 0.0003 32.9 6.2 57 217-273 5-63 (273)
272 3esl_A Checkpoint serine/threo 70.6 42 0.0014 27.3 10.1 104 226-355 61-170 (202)
273 3txn_A 26S proteasome regulato 70.0 66 0.0023 29.4 25.3 281 8-306 21-345 (394)
274 4b4t_R RPN7, 26S proteasome re 69.8 19 0.00066 33.4 9.1 96 109-204 133-239 (429)
275 1y8m_A FIS1; mitochondria, unk 69.6 35 0.0012 26.0 10.2 70 170-240 36-109 (144)
276 2nsz_A Programmed cell death p 69.6 25 0.00086 26.3 8.0 64 110-173 10-78 (129)
277 1oyz_A Hypothetical protein YI 69.1 53 0.0018 27.9 21.7 235 29-282 29-274 (280)
278 1wdy_A 2-5A-dependent ribonucl 67.3 9.7 0.00033 32.4 6.2 24 10-33 6-29 (285)
279 2nsz_A Programmed cell death p 67.0 35 0.0012 25.5 8.3 61 9-69 10-75 (129)
280 4b4t_R RPN7, 26S proteasome re 65.2 59 0.002 30.0 11.4 96 140-235 133-234 (429)
281 2ion_A PDCD4, programmed cell 63.5 21 0.00072 27.6 6.6 63 110-172 12-79 (152)
282 4gq2_M Nucleoporin NUP120; bet 63.2 1.1E+02 0.0039 31.6 14.1 52 12-64 816-867 (950)
283 1wdy_A 2-5A-dependent ribonucl 62.3 31 0.0011 29.1 8.5 205 42-265 7-240 (285)
284 2qx5_A Nucleoporin NIC96; mRNA 61.8 64 0.0022 31.8 11.2 84 218-301 452-564 (661)
285 1oyz_A Hypothetical protein YI 61.5 74 0.0025 26.9 21.7 216 70-303 35-262 (280)
286 2ion_A PDCD4, programmed cell 60.7 29 0.001 26.8 7.0 61 9-69 12-77 (152)
287 2l0z_A Glycoprotein G2; zinc-b 58.6 1.9 6.4E-05 24.5 -0.1 17 413-429 12-29 (42)
288 3eiq_C Programmed cell death p 57.8 1E+02 0.0034 27.7 10.9 23 11-33 59-81 (358)
289 3kea_A K1L; tropism, ANK repea 55.3 41 0.0014 28.8 8.0 118 184-310 103-223 (285)
290 2d2s_A Exocyst complex compone 55.1 54 0.0018 27.5 8.2 87 42-131 23-115 (235)
291 3mv2_A Coatomer subunit alpha; 53.0 1.2E+02 0.0041 26.7 12.6 60 232-305 196-257 (325)
292 4a1g_A Mitotic checkpoint seri 50.2 85 0.0029 24.2 9.1 51 258-308 82-134 (152)
293 4b4t_S RPN3, 26S proteasome re 46.8 1.8E+02 0.0061 27.7 11.0 64 37-100 231-298 (523)
294 2k0q_A Putative uncharacterize 46.6 5 0.00017 26.0 0.4 22 406-427 8-29 (74)
295 3eiq_C Programmed cell death p 46.6 1.6E+02 0.0056 26.4 16.9 78 140-219 219-298 (358)
296 2wvi_A Mitotic checkpoint seri 44.1 1.1E+02 0.0039 23.8 9.2 50 259-308 78-129 (164)
297 3esl_A Checkpoint serine/threo 42.5 1.4E+02 0.0046 24.3 11.2 83 124-208 61-149 (202)
298 3hra_A Ankyrin repeat family p 42.5 43 0.0015 26.5 5.8 21 13-33 9-29 (201)
299 3bqo_A Telomeric repeat-bindin 41.7 1.1E+02 0.0039 24.7 7.5 60 225-284 94-160 (211)
300 2d2s_A Exocyst complex compone 40.1 90 0.0031 26.1 7.3 86 145-234 25-116 (235)
301 4b4t_S RPN3, 26S proteasome re 39.2 98 0.0034 29.4 8.0 24 176-199 234-257 (523)
302 2yru_A Steroid receptor RNA ac 38.6 49 0.0017 24.3 4.7 43 59-101 48-90 (118)
303 4aez_C MAD3, mitotic spindle c 37.9 72 0.0025 26.4 6.1 51 258-308 131-183 (223)
304 2zu6_B Programmed cell death p 35.8 2.2E+02 0.0076 24.8 16.6 27 9-35 6-32 (307)
305 3mkr_B Coatomer subunit alpha; 35.8 1.9E+02 0.0066 25.3 8.8 60 232-305 187-248 (320)
306 3l6a_A Eukaryotic translation 34.1 1.9E+02 0.0066 25.9 9.0 27 110-136 15-41 (364)
307 1oai_A Nuclear RNA export fact 33.8 26 0.0009 22.0 2.3 23 50-72 33-56 (59)
308 2fu4_A Ferric uptake regulatio 33.7 1E+02 0.0035 20.3 6.8 61 61-122 6-67 (83)
309 2w57_A Ferric uptake regulatio 33.2 1.3E+02 0.0044 22.9 6.7 62 61-123 6-68 (150)
310 2fe3_A Peroxide operon regulat 31.8 1.2E+02 0.004 22.9 6.3 62 61-123 11-72 (145)
311 2fe3_A Peroxide operon regulat 31.7 1.3E+02 0.0043 22.7 6.5 60 164-225 13-72 (145)
312 3ygs_P Procaspase 9; apoptosis 31.5 61 0.0021 22.7 4.2 38 121-158 51-88 (97)
313 4gq2_M Nucleoporin NUP120; bet 31.3 4.6E+02 0.016 27.1 14.0 48 175-223 899-950 (950)
314 3hra_A Ankyrin repeat family p 30.9 1.1E+02 0.0037 24.0 6.3 15 118-132 13-27 (201)
315 3ljn_A Hypothetical protein; a 30.8 1.4E+02 0.0047 26.3 7.6 81 218-300 179-266 (364)
316 4ets_A Ferric uptake regulatio 30.6 1E+02 0.0034 23.9 5.8 70 53-123 13-85 (162)
317 1n11_A Ankyrin; clathrin, BAND 30.5 2.1E+02 0.0072 25.9 9.1 114 10-132 15-135 (437)
318 2zu6_B Programmed cell death p 30.5 1.4E+02 0.0048 26.1 7.2 22 42-63 171-192 (307)
319 2pk8_A Uncharacterized protein 30.4 14 0.00048 25.5 0.6 30 332-361 13-42 (103)
320 1mzb_A Ferric uptake regulatio 30.1 1.6E+02 0.0056 21.8 6.8 61 62-123 8-69 (136)
321 3eyy_A Putative iron uptake re 29.2 1.1E+02 0.0037 23.2 5.6 62 58-121 5-66 (145)
322 3kae_A CDC27, possible protein 29.2 2.1E+02 0.0073 22.6 16.0 78 120-199 46-140 (242)
323 3eu9_A Huntingtin-interacting 28.7 99 0.0034 24.9 5.9 57 247-304 180-236 (240)
324 2hgo_A CASSIICOLIN; toxin, dis 28.2 12 0.0004 18.4 -0.1 13 418-430 8-22 (27)
325 2xig_A Ferric uptake regulatio 28.0 2E+02 0.0067 21.8 7.0 13 189-201 42-54 (150)
326 2xig_A Ferric uptake regulatio 27.9 1.9E+02 0.0064 21.9 6.9 62 61-123 16-77 (150)
327 3qye_A TBC1 domain family memb 27.8 3.1E+02 0.01 24.0 10.1 128 52-186 164-307 (331)
328 3bu8_A Telomeric repeat-bindin 27.5 2.2E+02 0.0075 23.4 7.1 20 216-235 121-140 (235)
329 3bqo_A Telomeric repeat-bindin 27.4 1.2E+02 0.0042 24.4 5.6 44 22-65 94-145 (211)
330 3b7b_A Euchromatic histone-lys 27.4 81 0.0028 25.6 5.1 53 250-303 183-235 (237)
331 1wgl_A TOLL-interacting protei 27.3 47 0.0016 20.8 2.6 23 286-308 34-56 (59)
332 3ygs_P Procaspase 9; apoptosis 26.9 52 0.0018 23.0 3.1 38 51-92 51-88 (97)
333 1ug3_A EIF4GI, eukaryotic prot 26.8 2.8E+02 0.0097 24.4 8.8 60 110-169 14-77 (339)
334 2qq8_A TBC1 domain family memb 26.5 1.9E+02 0.0064 25.5 7.5 42 161-202 216-257 (334)
335 3aji_A 26S proteasome non-ATPa 25.9 2E+02 0.0069 23.0 7.3 15 220-234 114-128 (231)
336 2yru_A Steroid receptor RNA ac 25.7 1.1E+02 0.0036 22.5 4.7 43 160-202 48-90 (118)
337 2p1h_A APAF-1, apoptotic prote 25.6 1.6E+02 0.0056 20.1 7.2 59 92-154 25-83 (94)
338 1k1a_A B-cell lymphoma 3-encod 25.5 1.1E+02 0.0039 24.7 5.7 19 84-102 18-36 (241)
339 3jxi_A Vanilloid receptor-rela 23.2 1E+02 0.0035 25.5 5.1 54 45-98 10-72 (260)
340 4ets_A Ferric uptake regulatio 22.6 1.7E+02 0.0058 22.6 5.7 70 155-225 14-85 (162)
341 2qfz_A TBC1 domain family memb 22.2 3.2E+02 0.011 24.0 8.3 107 54-164 189-312 (345)
342 2b7e_A PRE-mRNA processing pro 21.7 56 0.0019 20.5 2.1 29 155-183 3-31 (59)
343 2rfa_A Transient receptor pote 21.7 3.1E+02 0.01 21.8 7.8 50 12-62 6-59 (232)
344 4a1g_A Mitotic checkpoint seri 21.6 2.8E+02 0.0094 21.3 10.7 81 124-208 52-135 (152)
345 1k1a_A B-cell lymphoma 3-encod 21.6 1.7E+02 0.0057 23.6 6.0 16 220-235 87-102 (241)
346 2r9g_A AAA ATPase, central reg 21.2 3.3E+02 0.011 22.0 9.5 44 143-187 16-62 (204)
347 3rjo_A Endoplasmic reticulum a 21.0 4.7E+02 0.016 23.7 19.5 26 22-47 126-152 (419)
348 3eu9_A Huntingtin-interacting 20.8 2.2E+02 0.0075 22.7 6.6 15 220-234 117-131 (240)
349 1n11_A Ankyrin; clathrin, BAND 20.4 1.6E+02 0.0054 26.8 6.1 270 12-308 50-337 (437)
350 3ctd_A Putative ATPase, AAA fa 20.2 3.2E+02 0.011 22.3 6.8 62 43-104 38-107 (213)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-31 Score=260.34 Aligned_cols=197 Identities=10% Similarity=0.115 Sum_probs=176.3
Q ss_pred HHHHHccCCCC-----CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHH
Q 043370 25 GEKVIRLMPIR-----NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT---------LGQ 90 (430)
Q Consensus 25 A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~ 90 (430)
+..+++++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555432 2346889999999999999999999999999999999999999999987654 688
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 91 GQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 91 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
|.++|++|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999986 57999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc
Q 043370 167 KEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC 222 (430)
Q Consensus 167 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 222 (430)
.|+.||..||++||.+|++.|++++|.+++++|.+. +..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999877 9999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.9e-30 Score=258.20 Aligned_cols=293 Identities=11% Similarity=-0.010 Sum_probs=269.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC--CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI--RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE 84 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 84 (430)
.+|+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 4566678889999999999999999987 799999999999999999999999999999875 4578889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
.|++++|.++++++.+.. +.+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999764 4588999999999999999999999999864 457899999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC------
Q 043370 162 EQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM------ 235 (430)
Q Consensus 162 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------ 235 (430)
+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999874 557899999999999999999999999999864 2447889999999999999999999999988
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 236 -PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 236 -~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+..|+ ..+|..+..+|.+.|++++|...++++.+.+|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45787 7899999999999999999999999999999999999999999999999999999999998764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.3e-30 Score=249.94 Aligned_cols=200 Identities=11% Similarity=0.105 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---------H
Q 043370 54 EDVLDQYNLMRMVGFRPDK-ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC---------L 123 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~ 123 (430)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455667788777766554 45888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 124 DDSVKTFLECE----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 124 ~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
+.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999986 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 043370 200 VKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM---PVKANAIIWKTLLSACKTH 254 (430)
Q Consensus 200 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 254 (430)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..|+..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 887 99999999999999999999999999999999 7899999999999998763
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.7e-29 Score=252.60 Aligned_cols=342 Identities=9% Similarity=-0.022 Sum_probs=266.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccC--CCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC--------------
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLM--PIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV-------------- 66 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 66 (430)
.||..++..++.+|.+.|++++|..+|+++ ..++..+|+.++.+|.+.|++++|+++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD 193 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCC
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccc
Confidence 467777888888888888888888888887 3568888888888888888888888888853221
Q ss_pred -CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHH----------------------------------
Q 043370 67 -GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVIS---------------------------------- 111 (430)
Q Consensus 67 -g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~---------------------------------- 111 (430)
+.+++..+|+.++.++.+.|++++|.+.|+++.+.++. +...+.
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 22345788888899999999999999999888876533 333333
Q ss_pred ----HHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 112 ----SLISMYSRCGCLDDSVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 112 ----~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
.++.+|.+.|++++|.++|+++.. +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 235667788888999999988876 788999999999999999999999999998765 4467788899999999
Q ss_pred cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 043370 186 CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRI 263 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 263 (430)
.|++++|..+++.+.+. .+.+...++.++.+|.+.|++++|.++|+++ ...| +..+|+.++.+|.+.|++++|..+
T Consensus 352 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998753 3457888999999999999999999999987 3334 578999999999999999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHH
Q 043370 264 AEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEE 343 (430)
Q Consensus 264 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (430)
++++.+..|.+..+|..++.+|.+.|++++|.++++++.+.. |.....|..+ .......++.+++...+++
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNEL-------GVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHH-------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHH-------HHHHHHhCCHHHHHHHHHH
Confidence 999999999899999999999999999999999999997653 2211222211 1112235566666655555
Q ss_pred HHHHHHHcCcccCC
Q 043370 344 LTSEMKLRGYVPDT 357 (430)
Q Consensus 344 l~~~m~~~g~~p~~ 357 (430)
+.+...+.|..|+.
T Consensus 501 ~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 501 ALLLVKKTQSNEKP 514 (597)
T ss_dssp HHHHHHHSCCCSGG
T ss_pred HHHhhhccccchhh
Confidence 55554555777763
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=9.3e-24 Score=199.68 Aligned_cols=295 Identities=14% Similarity=0.071 Sum_probs=230.0
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
.+..+|..+...|.+.|++++|...|+++. ..+..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+..
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 143 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 345677777888888888888888877664 2345677778888888888888888888777653 233455666777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A 157 (430)
.+...|++++|.+.++++.+..+ .+..+++.+...|.+.|++++|...|+++. +.+...|..+...+...|++++|
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 77777888888888888877643 356777888888888888888888887754 34567778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
+..|++..... +.+..++..+...+...|++++|...|+++.+. .+.+...|..+...|.+.|++++|.+.|+++ .
T Consensus 223 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 223 VAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888877652 334677888888889999999999999988753 2335678888899999999999999998887 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 237 VK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 237 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.. ++..+|..+...+...|++++|...++++.+..|++..++..++.+|...|++++|...++++.+
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23 36788888888899999999999999999998888888899999999999999999999988865
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=5.9e-23 Score=194.15 Aligned_cols=294 Identities=14% Similarity=0.089 Sum_probs=257.9
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+...+..+...+.+.|++++|...++... ..+..+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..+
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 34567778888999999999999987654 4477899999999999999999999999998863 3456679999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+...|++++|.+.++++++..+. +..++..+...|...|++++|.+.|+++. +.+..+|+.+...|...|++++|+
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999987533 66778889999999999999999999865 346789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
..|+++.+.+ +.+...+..+...+...|++++|...+.+..+. .| +...+..+...|.+.|++++|.+.|+++ .
T Consensus 190 ~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 190 HHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998864 345678888999999999999999999998754 44 5788999999999999999999999988 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 237 VKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 237 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..| +..+|..+...+...|++++|...++++.+..|.++.++..++.++...|++++|...++++.+.
T Consensus 266 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455 57789999999999999999999999999999999999999999999999999999999998764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=6.6e-23 Score=197.51 Aligned_cols=295 Identities=13% Similarity=0.068 Sum_probs=256.5
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVIS 80 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 80 (430)
.+..++..+...|.+.|++++|..+|+++. ..+..+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 345788999999999999999999999875 3578999999999999999999999999999875 556888999999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCcH---hHHHHH------------HHHHHhcCCHHHHHHHHhccC---CCCHhHHH
Q 043370 81 SCSELATLGQGQQIHAEVVKAGASLDV---GVISSL------------ISMYSRCGCLDDSVKTFLECE---YSDVVLWS 142 (430)
Q Consensus 81 ~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~d~~~~~ 142 (430)
++...|++++|.+.++.+.+.... +. ..+..+ ...|.+.|++++|...|+++. +.+...|.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999986432 44 555555 445999999999999999865 45788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHH------
Q 043370 143 SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCV------ 215 (430)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l------ 215 (430)
.+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+++.+. .| +...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998763 556889999999999999999999999999854 34 34444444
Q ss_pred ------HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 216 ------VDLLGRCGYLDEAAALIRNM-PVKAN-----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 216 ------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
...+.+.|++++|...|+++ ...|+ ...|..+...+...|++++|...++++.+..|.++.+|..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 88899999999999999988 33444 4578888899999999999999999999999999999999999
Q ss_pred HHHhccchhHHHHHHHHHHhC
Q 043370 284 IHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~ 304 (430)
+|...|++++|...+++..+.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.5e-21 Score=186.39 Aligned_cols=273 Identities=10% Similarity=0.042 Sum_probs=236.0
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----HHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK----ITFV 76 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 76 (430)
.+..++..+...|.+.|++++|...|+++. ..+...|..+...|.+.|++++|++.|+++.+. .|+. ..+.
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 135 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQS 135 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHH
Confidence 467789999999999999999999999875 346889999999999999999999999999976 3443 4555
Q ss_pred HH------------HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHH
Q 043370 77 SV------------ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLW 141 (430)
Q Consensus 77 ~l------------l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~ 141 (430)
.+ ...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++. +.+..+|
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 55 444888999999999999999875 3488999999999999999999999999875 4578999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH------------HHHhhhcCcHHHHHHHHHHHhhhcCCccC
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DVTFVSL------------LYACSHCGLKEKGMEFFDLMVKKYRRKPR 208 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 208 (430)
+.+...|...|++++|+..|+++.+. .|+ ...+..+ ...|.+.|++++|..+|+++.+. .|+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~ 289 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPS 289 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc
Confidence 99999999999999999999999875 444 3444444 78899999999999999999864 344
Q ss_pred -----HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 209 -----LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 209 -----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
..++..+..++.+.|++++|...++++ ...| +...|..+..+|...|++++|...++++.+++|.++.++..+
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 458899999999999999999999987 4445 688999999999999999999999999999999998888888
Q ss_pred HHH
Q 043370 282 SNI 284 (430)
Q Consensus 282 ~~~ 284 (430)
..+
T Consensus 370 ~~~ 372 (450)
T 2y4t_A 370 EKA 372 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 844
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1e-19 Score=169.16 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=250.7
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
|+..+..+...+.+.|++++|...|+++. ..+...|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 56778889999999999999999999874 3468899999999999999999999999999864 4467889999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCC--CcHhHHHHH------------HHHHHhcCCHHHHHHHHhccC---CCCHhHHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGAS--LDVGVISSL------------ISMYSRCGCLDDSVKTFLECE---YSDVVLWSSM 144 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~l 144 (430)
+...|++++|...++.+.+.... .+...+..+ ...+...|++++|...|+++. +.+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999886431 245555555 688999999999999999864 4578899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH-----------
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT----------- 213 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 213 (430)
...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998863 5567889999999999999999999999998642 22333332
Q ss_pred -HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 214 -CVVDLLGRCGYLDEAAALIRNM-PVKAN-A----IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 214 -~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
.+...+.+.|++++|...++++ ...|+ . ..|..+...+...|+++.|...++++.+.+|.++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3366789999999999999987 33343 2 235557778999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHhC
Q 043370 287 SAKRWQGVSEFREAMRER 304 (430)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~ 304 (430)
..|++++|...+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999998754
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=8.8e-20 Score=167.74 Aligned_cols=286 Identities=9% Similarity=-0.005 Sum_probs=203.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVI 79 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 79 (430)
+.++.++..+...+...|++++|.++|+++. ..+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4455666777777778888888888877764 2344566667777778888888888888877753 34566777777
Q ss_pred HHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChH
Q 043370 80 SSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGE 155 (430)
Q Consensus 80 ~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~ 155 (430)
..+...| ++++|.+.++++.+... .+..++..+...|...|++++|...|++.. +.+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 78888888887776643 356677778888888888888888887654 334566777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC-------CccCHhHHHHHHHHHhhcCCHHHH
Q 043370 156 EAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYR-------RKPRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 228 (430)
+|++.|++..+.. +.+..++..+...+...|++++|...++++.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888877653 44566777777778888888888888877765311 123356777778888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH-Hhccch
Q 043370 229 AALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH-ASAKRW 291 (430)
Q Consensus 229 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 291 (430)
...+++. ...| +...|..+...+...|++++|...++++.+++|+++.++..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8877776 2223 4566777777788888888888888888888887777777777776 344443
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-19 Score=177.19 Aligned_cols=297 Identities=9% Similarity=-0.023 Sum_probs=174.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD-------- 71 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------- 71 (430)
.||..++..+..+|.+.|++++|...|+++. ..+...|..+..+|.+.|++++|+..|+++.+.+. ++
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHH
Confidence 4778888888999999999999998888764 34667888888888899999999888888866541 11
Q ss_pred -----------------------------------------------------------------------HHHHHHHHH
Q 043370 72 -----------------------------------------------------------------------KITFVSVIS 80 (430)
Q Consensus 72 -----------------------------------------------------------------------~~t~~~ll~ 80 (430)
...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 122222222
Q ss_pred HHh---ccCChHHHHHHHHHHHH-----c--CC------CCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--CC------
Q 043370 81 SCS---ELATLGQGQQIHAEVVK-----A--GA------SLDVGVISSLISMYSRCGCLDDSVKTFLECE--YS------ 136 (430)
Q Consensus 81 ~~~---~~g~~~~a~~~~~~~~~-----~--g~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~------ 136 (430)
.+. +.|++++|...++++.+ . .. +.+..++..+...|...|++++|...|+++. .|
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 274 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI 274 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 222 25667777777766665 2 10 1234556666666677777777766665532 11
Q ss_pred ----------------------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc
Q 043370 137 ----------------------------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188 (430)
Q Consensus 137 ----------------------------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 188 (430)
+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|+
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCC
Confidence 33344445555555555555555555555432 2234445555555555555
Q ss_pred HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCh
Q 043370 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PVKAN----AIIWKTLLSACKT---HKST 257 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~---~~~~ 257 (430)
+++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ +..|+ ...|..+...+.. .|++
T Consensus 354 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 354 FDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 55555555555442 1223445555555566666666666555554 11111 2255555555555 5666
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 258 DMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+.|...++++.+..|.++.++..+..+|...|++++|...+++..+
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666666665665555666666666666666666666665544
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-19 Score=177.16 Aligned_cols=294 Identities=9% Similarity=-0.030 Sum_probs=251.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
...+..+...|.+.|++++|...|+++. .||...|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4567778899999999999999999885 4799999999999999999999999999999875 556788999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCC----------------------------------------------------------
Q 043370 84 ELATLGQGQQIHAEVVKAGASL---------------------------------------------------------- 105 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~---------------------------------------------------------- 105 (430)
..|++++|...|+.+.+.+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999998765311
Q ss_pred --------------------cHhHHHHHHHHHHh---cCCHHHHHHHHhccCC-----------------CCHhHHHHHH
Q 043370 106 --------------------DVGVISSLISMYSR---CGCLDDSVKTFLECEY-----------------SDVVLWSSMI 145 (430)
Q Consensus 106 --------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----------------~d~~~~~~li 145 (430)
+...+..+...+.. .|++++|...|+++.. .+..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 13333334444443 8999999999987543 2457888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 225 (430)
..+...|++++|+..|+++.+.. |+..++..+...+...|++++|...++.+.+. .+.+...+..+...|...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999998864 44788889999999999999999999999753 234678899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 226 DEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
++|...+++. ...| +...|..+...+...|+++.|...++++.+..|.++.++..++.+|...|++++|...++++.+
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 3344 5678888989999999999999999999999999999999999999999999999999998875
Q ss_pred C
Q 043370 304 R 304 (430)
Q Consensus 304 ~ 304 (430)
.
T Consensus 401 ~ 401 (514)
T 2gw1_A 401 L 401 (514)
T ss_dssp H
T ss_pred h
Confidence 4
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1e-18 Score=160.57 Aligned_cols=264 Identities=11% Similarity=0.042 Sum_probs=229.6
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++++.+... .+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 356677788899999999999999999998864 44566677788888999999999999999998753 3788899999
Q ss_pred HHHHhcC-CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH
Q 043370 115 SMYSRCG-CLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE 190 (430)
Q Consensus 115 ~~~~~~g-~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 190 (430)
..|...| ++++|...|++.. +.+...|..+...|...|++++|+..|++..+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999864 3467889999999999999999999999998864 345677778999999999999
Q ss_pred HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCChhH
Q 043370 191 KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV----------KANAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 191 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~~~~~~ 259 (430)
+|...++++.+. .+.+...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999863 3446788999999999999999999999876 11 2246788999999999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 260 AGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|...++++.+..|.++.++..+..+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999997644
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=5.4e-18 Score=157.44 Aligned_cols=282 Identities=10% Similarity=0.031 Sum_probs=233.4
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC----CHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP----DKITFV 76 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~ 76 (430)
.+..++..+...|...|++++|...|+++. ..+...|..+...+.+.|++++|+..|++..+. .| +...+.
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 112 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAES 112 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHH
Confidence 346788999999999999999999999865 347789999999999999999999999999876 44 444444
Q ss_pred HH------------HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHH
Q 043370 77 SV------------ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLW 141 (430)
Q Consensus 77 ~l------------l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~ 141 (430)
.+ ...+...|++++|...++.+.+... .+..++..+...|.+.|++++|...|++.. +.+...|
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 191 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 44 5778899999999999999998754 478899999999999999999999999864 4578899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV------------SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL 209 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 209 (430)
..+...|...|++++|...|++..+.. +.+...+. .+...+...|++++|...++.+.+...-.+..
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 270 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY 270 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 999999999999999999999998763 22333332 23666889999999999999998752211111
Q ss_pred --hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 210 --EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 210 --~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
..+..+...|.+.|++++|...+++. ...| +..+|..+...+...|++++|...++++.+++|.++..+..+..++
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34566888999999999999999988 3345 6888999999999999999999999999999998888888887776
Q ss_pred Hhcc
Q 043370 286 ASAK 289 (430)
Q Consensus 286 ~~~g 289 (430)
...+
T Consensus 351 ~~~~ 354 (359)
T 3ieg_A 351 RLLK 354 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=9e-19 Score=163.79 Aligned_cols=281 Identities=9% Similarity=-0.055 Sum_probs=225.9
Q ss_pred HHHHcCChHHHHH-HHccCCC-----C--CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 15 MYMKSGSLVEGEK-VIRLMPI-----R--NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 15 ~~~~~g~~~~A~~-~f~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
.|.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678888888 7775431 1 35678889999999999999999999999874 557888999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHH---------------HHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSS---------------MIAAY 148 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~---------------li~~~ 148 (430)
++++|...++++++... .+..++..+...|...|++++|...|+++.. .+...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999998863 4788999999999999999999999987642 22222221 23334
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998863211 4788999999999999999999999999864 23457889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC-----------ChhHHHHHHHHHhccchhHH
Q 043370 228 AAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD-----------AAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 228 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 294 (430)
|...++++ ...| +...|..+...+...|++++|...++++.++.|.+ ..+|..+..+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3344 57889999999999999999999999999887765 68999999999999999999
Q ss_pred HHHHH
Q 043370 295 SEFRE 299 (430)
Q Consensus 295 ~~~~~ 299 (430)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98876
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=4.2e-20 Score=171.82 Aligned_cols=241 Identities=12% Similarity=0.073 Sum_probs=114.7
Q ss_pred HHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043370 17 MKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHA 96 (430)
Q Consensus 17 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 96 (430)
-+.|++++|.+++++++.|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37789999999999997664 899999999999999999999965 3578899999999999999999999888
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043370 97 EVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTF 176 (430)
Q Consensus 97 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 176 (430)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45678899999999999999999988864 67789999999999999999999999977 368
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKS 256 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~ 256 (430)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 99999999999999999999987 26789999999999999999998877766655554 4468889999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 257 TDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
+++|..+++..+++++.....|..|..+|++-
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999988889999998888765
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=1.4e-17 Score=163.91 Aligned_cols=226 Identities=12% Similarity=-0.000 Sum_probs=168.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhc
Q 043370 75 FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 75 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~ 151 (430)
+..+...+...|++++|...++.+.+.. |+..++..+...|...|++++|...|++.. +.+..+|..+...|...
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 4444455566677777777777777753 346677777777888888888888877654 34677788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
|++++|+..|++..+.. +.+..++..+...+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|...
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 88888888888887753 334567777888888888888888888888764 233566778888888888888888888
Q ss_pred HHhC----CCCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH
Q 043370 232 IRNM----PVKA----NAIIWKTLLSACKTH----------KSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 232 ~~~m----~~~p----~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
++++ +..+ ....+..+...+... |++++|...++++.+..|.++.++..+..+|...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 8876 1111 222233444556666 888999999999988888888889999999999999999
Q ss_pred HHHHHHHHHhCC
Q 043370 294 VSEFREAMRERN 305 (430)
Q Consensus 294 a~~~~~~m~~~g 305 (430)
|.+.+++..+..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999998886643
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.1e-18 Score=163.17 Aligned_cols=261 Identities=8% Similarity=-0.045 Sum_probs=217.1
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45668899999999999999999999999864 55788999999999999999999999999998753 47889999999
Q ss_pred HHHhcCCHHHHHHHHhccCCC---C----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYS---D----------VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE-ANDVTFVSLLY 181 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~---d----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 181 (430)
.|.+.|++++|...|+++... + ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999987532 1 223345588899999999999999999886421 15788999999
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 259 (430)
.+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|...|+++ ...| +..+|..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 2346789999999999999999999999987 4445 58889999999999999999
Q ss_pred HHHHHHHHhcCCCC------------CChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 260 AGRIAEEILGVNPQ------------DAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 260 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
|...++++.++.|. +...|..|..++...|+.+.+..+.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999877664 367899999999999999988877653
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=9.3e-18 Score=165.12 Aligned_cols=294 Identities=10% Similarity=0.025 Sum_probs=240.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
...+..+...|.+.|++++|...|+++. ..+...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3567888899999999999999999875 3478999999999999999999999999999875 55788899999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcH-------------------------------------h-----------------
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDV-------------------------------------G----------------- 108 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~-------------------------------------~----------------- 108 (430)
...|++++|...++.+ .....+.. .
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999998633 21111100 0
Q ss_pred -------------HHHHHHHHHHh--------cCCHHHHHHHHhccCC--C-C-------HhHHHHHHHHHHhcCChHHH
Q 043370 109 -------------VISSLISMYSR--------CGCLDDSVKTFLECEY--S-D-------VVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 109 -------------~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~-d-------~~~~~~li~~~~~~g~~~~A 157 (430)
....+...+.. .|++++|..+|+++.. | + ..+|..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 22222222222 2478889999988653 2 2 23567777888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
+..|++..+. .|+..++..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++. .
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999986 566888899999999999999999999999864 2346788999999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 237 VKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 237 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..| +...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|...+++..+..
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 334 467888899999999999999999999999999999999999999999999999999999987644
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.7e-17 Score=147.21 Aligned_cols=270 Identities=9% Similarity=-0.008 Sum_probs=219.7
Q ss_pred HHHHHcCChHHHHHHHccCCCCCH----HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 043370 14 HMYMKSGSLVEGEKVIRLMPIRNV----IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLG 89 (430)
Q Consensus 14 ~~~~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 89 (430)
.-....|+++.|+..++.....+. ...-.+.++|...|++++|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 445568999999999988765432 3556678999999999999987754 2 3677888999999999999999
Q ss_pred HHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043370 90 QGQQIHAEVVKAGA-SLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 90 ~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 168 (430)
+|.+.++++++.+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999998764 44677888889999999999999999999 568889999999999999999999999999886
Q ss_pred CCCCHHHH---HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 043370 169 FEANDVTF---VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAII 243 (430)
Q Consensus 169 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 243 (430)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|...|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3654321 12233444569999999999999875 3567889999999999999999999999997 4445 6778
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHH
Q 043370 244 WKTLLSACKTHKSTDM-AGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
|..++..+...|+.++ +.++++++.+++|+++.+ .+...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9999999999999876 678999999999977654 3445566666665443
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=1.2e-17 Score=153.11 Aligned_cols=259 Identities=8% Similarity=-0.051 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445666677777777777777777777653 3456667777777777777777777777777764 3366777777777
Q ss_pred HHhcCCHHHHHHHHhccCC---CCHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEY---SDVVLWSSM--------------IA-AYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~---~d~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 178 (430)
|...|++++|.+.|+++.. .+...+..+ .. .+...|++++|++.++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 7778888888777776532 122222222 22 3777889999999999998864 446788889
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKS 256 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 256 (430)
+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...++++ ...| +...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998864 2345788999999999999999999999987 3334 57889999999999999
Q ss_pred hhHHHHHHHHHhcCCCC------------CChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 257 TDMAGRIAEEILGVNPQ------------DAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 257 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+++|...++++.+..|. ++.++..+..+|...|++++|..++++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999988886 678899999999999999999998764
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.7e-18 Score=158.97 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=212.2
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+...+..+...|.+.|++++|...|+++. ..+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34558889999999999999999999875 3478899999999999999999999999999864 4568899999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCC---------cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CC--CHhHHHHHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASL---------DVGVISSLISMYSRCGCLDDSVKTFLECE---YS--DVVLWSSMIAA 147 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~--d~~~~~~li~~ 147 (430)
+...|++++|...++++.+..... ...++..+...|.+.|++++|...|+++. +. +..+|..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999998864220 12233456889999999999999999865 23 68899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
|...|++++|++.|++..+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+..+|.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998863 456889999999999999999999999999864 23357889999999999999999
Q ss_pred HHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 228 AAALIRNM-PVKA-------------NAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 228 A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
|...|+++ ...| +..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999987 1111 267899999999999999998887665
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.2e-17 Score=156.14 Aligned_cols=276 Identities=11% Similarity=0.009 Sum_probs=204.2
Q ss_pred CChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHhccCChHHHHHHH
Q 043370 20 GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLD-QYNLMRMVGF-RP--DKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 20 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
+.++.+...|+.+...+.. ++...|++++|+. .|++..+... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555433322 3445688999998 8887664321 11 3456788889999999999999999
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN 172 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 172 (430)
+++++.. +.+..++..+...|.+.|++++|...|+++. +.+..+|..+...|...|++++|++.|+++.+.. +.+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 165 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAY 165 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCc
Confidence 9999875 3478899999999999999999999999764 4578899999999999999999999999998864 222
Q ss_pred HHHHHH---------------HHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043370 173 DVTFVS---------------LLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P 236 (430)
Q Consensus 173 ~~t~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 236 (430)
...+.. .+..+...|++++|..+++++.+.....++...+..+...|.+.|++++|...++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222211 233344889999999999999875222225788999999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 237 VKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 237 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..| +..+|..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|...+++..+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344 57889999999999999999999999999999999999999999999999999999999988753
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=7e-19 Score=163.65 Aligned_cols=266 Identities=9% Similarity=0.071 Sum_probs=137.4
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
+++.+|+.|+.++.+.|++++|++.|.+. +|...|..++.++.+.|++++|+..++..++. .+++.+.+.++.+|.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 44569999999999999999999999764 57779999999999999999999977766663 566888999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 163 (430)
+.|+++++.++++ .|+..+|+.+++.|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+++
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998885 367789999999999999999999999987 4799999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 043370 164 MEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NA 241 (430)
Q Consensus 164 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 241 (430)
+ .+..||..++.+|...|+++.|......+ ...+.....++..|.+.|++++|..+++.. +..+ ..
T Consensus 174 A------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~ 241 (449)
T 1b89_A 174 A------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 241 (449)
T ss_dssp H------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred c------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH
Confidence 8 27899999999999999999996655443 234445667999999999999999999876 5544 57
Q ss_pred HHHHHHHHHHHhcC--ChhHHHHHHHHHhcCCC-----CCChhHHHHHHHHHhccchhHHHHH
Q 043370 242 IIWKTLLSACKTHK--STDMAGRIAEEILGVNP-----QDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 242 ~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
..|+-|--+|++.+ +..+.++.|..-..+.| .+...|.-++..|.+.++++.|..+
T Consensus 242 ~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 242 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 77887777777663 34444444443334445 5789999999999999999998774
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=179.30 Aligned_cols=147 Identities=12% Similarity=0.150 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC-------CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP-------IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
..+||+||++|+++|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997653 689999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHhHHHHHHHHHHhcC
Q 043370 79 ISSCSELATL-GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYS-----DVVLWSSMIAAYGFHG 152 (430)
Q Consensus 79 l~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~~~g 152 (430)
|.++++.|+. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++.++..+ .+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999888877777766665555421 2334444556666554
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=7.3e-17 Score=147.92 Aligned_cols=260 Identities=10% Similarity=0.023 Sum_probs=217.1
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+...+..+...+.+.|++++|..+|+++. ..+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34556788899999999999999999874 3478899999999999999999999999999864 5578889999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHH--------------HH-HHHhcCCHHHHHHHHhccC---CCCHhHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSL--------------IS-MYSRCGCLDDSVKTFLECE---YSDVVLWSS 143 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~---~~d~~~~~~ 143 (430)
+...|++++|.+.++.+.+.... +...+..+ .. .+...|++++|...|+++. +.+...|..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 99999999999999999986433 33333333 33 4888999999999998864 447889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 223 (430)
+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998863 446788999999999999999999999999864 2346788999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 224 YLDEAAALIRNM-PVKA-------------NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 224 ~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
++++|.+.++++ ...| +...|..+...+...|+.+.|..++++.++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999887 2223 367889999999999999999999886553
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.1e-17 Score=145.68 Aligned_cols=246 Identities=8% Similarity=0.055 Sum_probs=203.1
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 44 IAGKAQNGLAEDVLDQYNLMRMVGFRPDK--ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 44 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
|+-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34466789999999999876543 4543 3556778899999999999976644 24567888999999999999
Q ss_pred CHHHHHHHHhccC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 122 CLDDSVKTFLECE-----YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 122 ~~~~A~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
+.++|.+.++++. +.+...+..+...|.+.|++++|++.|++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23677788888999999999999999987 467788999999999999999999999
Q ss_pred HHHhhhcCCccCHh---HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 197 DLMVKKYRRKPRLE---HYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 197 ~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
+.+.+. .|+.. .....+..+...|++++|..+|+++ ....+...|+.+..++...|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 35432 1223445555679999999999998 223478899999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhccchhH-HHHHHHHHHhC
Q 043370 272 PQDAAPYVLLSNIHASAKRWQG-VSEFREAMRER 304 (430)
Q Consensus 272 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 304 (430)
|.++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888887654
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=8.3e-19 Score=175.58 Aligned_cols=129 Identities=6% Similarity=0.053 Sum_probs=113.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECE-------YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 178 (430)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999997753 57999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCc-HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 179 LLYACSHCGL-KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 179 ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999997 57899999999887 99999999999998887776555555554333
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.7e-16 Score=135.33 Aligned_cols=223 Identities=10% Similarity=-0.018 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--Cc----HhHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS--LD----VGVI 110 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~----~~~~ 110 (430)
...|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|...+..+.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776665 56666777777777777777777777766654211 11 3555
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL 188 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 188 (430)
..+...|.+.|++++|...|++... ++ ...+...|++++|+..++++.... +.+...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 5666666666666666666655432 22 123444455666666666655531 2223445555555556666
Q ss_pred HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
+++|...++++.+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|+.+.|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666665543 1223455555555555666666665555554 2222 345555555556666666666666666
Q ss_pred HhcCC
Q 043370 267 ILGVN 271 (430)
Q Consensus 267 ~~~~~ 271 (430)
+.++.
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 55554
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.8e-15 Score=130.28 Aligned_cols=220 Identities=10% Similarity=0.003 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C-------HhHH
Q 043370 72 KITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--S-D-------VVLW 141 (430)
Q Consensus 72 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d-------~~~~ 141 (430)
...+..+...+...|++++|...++++++.. .+..++..+..+|...|++++|...|++... | + ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888889999999999999999999987 6889999999999999999999999988652 1 2 6889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
..+...|...|++++|+..|++..+. .|+. ..+...|++++|...++.+... .+.+...+..+...|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999885 4553 3456678899999999998753 23356788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHH
Q 043370 222 CGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 222 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
.|++++|...+++. ...| +..+|..+...+...|++++|...++++.+..|.++.++..+..+|...|++++|...++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999987 3333 678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 043370 300 AMRER 304 (430)
Q Consensus 300 ~m~~~ 304 (430)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87653
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=8.1e-15 Score=130.85 Aligned_cols=241 Identities=10% Similarity=-0.062 Sum_probs=185.5
Q ss_pred HCCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGF---RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDD 125 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 125 (430)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...++++++... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 45778889999988887531 11456677888888888999999999988888753 367888889999999999999
Q ss_pred HHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 126 SVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 126 A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
|.+.|++.. +.+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999988764 346788899999999999999999999999875 455555555555667779999999999887764
Q ss_pred cCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh
Q 043370 203 YRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA 276 (430)
Q Consensus 203 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 276 (430)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++.+.+|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 4777788888889999998876 33332 577888889999999999999999999999996655
Q ss_pred hHHHHHHHHHhccchhHHHHHH
Q 043370 277 PYVLLSNIHASAKRWQGVSEFR 298 (430)
Q Consensus 277 ~~~~l~~~~~~~g~~~~a~~~~ 298 (430)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 55777888888887765
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=9.9e-15 Score=130.18 Aligned_cols=239 Identities=9% Similarity=-0.032 Sum_probs=119.5
Q ss_pred HHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD--KITFVSVISSCSE 84 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~ 84 (430)
......|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+.+-.|+ ..+|..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 344455555555555555555432 12333555555555555555555555555554221111 1224455555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHH-HHHHhcCChHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMI-AAYGFHGKGEEAINL 160 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li-~~~~~~g~~~~A~~~ 160 (430)
.|++++|...++.+.+.... +..++..+...|.+.|++++|...|++... .+...|..+. ..|. .+++++|++.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 55555555555555554322 344555555555555555555555554431 2334444444 2222 2355555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC---HHHHHHHHHhC--
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY---LDEAAALIRNM-- 235 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-- 235 (430)
|++..+. .|+ +...+..+...+...|+ +++|...+++.
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5554443 122 23333334444444443 33333333333
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 236 --PVKAN------AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 236 --~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
...|+ ..+|..+...|...|+++.|...++++.+++|.++.+...+......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 11122 24566677778888899999999999988888887777666554433
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=6.5e-15 Score=127.17 Aligned_cols=195 Identities=12% Similarity=-0.024 Sum_probs=140.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 104 SLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180 (430)
Q Consensus 104 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 180 (430)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3455666677777777777777777777643 3456677777777777777777777777777653 33456666777
Q ss_pred HHhhhc-----------CcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 043370 181 YACSHC-----------GLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTL 247 (430)
Q Consensus 181 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 247 (430)
..+... |++++|...+++..+. .| +...+..+..+|...|++++|...|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 777777 8999999999888754 34 5677888888999999999999998877 111678888899
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 248 LSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 248 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
...+...|++++|...++++++.+|.++.++..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888653
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=1.9e-14 Score=134.65 Aligned_cols=246 Identities=8% Similarity=0.038 Sum_probs=207.7
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT-LGQGQQIHAEVVKAGASLDVGVISSLI 114 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li 114 (430)
+...|+.+...+.+.|++++|++.|++.++.. +-+...|..+..++...|+ +++|...++++++.... +..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 45788899999999999999999999999864 4467789999999999996 99999999999998654 889999999
Q ss_pred HHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh-cCcHH
Q 043370 115 SMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH-CGLKE 190 (430)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 190 (430)
.+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999865 5588999999999999999999999999999874 3467889999888888 66657
Q ss_pred HH-----HHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 043370 191 KG-----MEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCG--YLDEAAALIRNMPVKA-NAIIWKTLLSACKTHK------ 255 (430)
Q Consensus 191 ~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~------ 255 (430)
+| ...+++.++. .| +...|..+..+|.+.| ++++|.+.++++...| +...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5888888753 45 5678899999999988 6899999998885455 5677888888888764
Q ss_pred ---ChhHHHHHHHHH-hcCCCCCChhHHHHHHHHHh
Q 043370 256 ---STDMAGRIAEEI-LGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 256 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 287 (430)
..++|..+++++ .+++|.....|..+...+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999888888877776653
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.1e-14 Score=123.94 Aligned_cols=194 Identities=13% Similarity=0.048 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++.++..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45566666667777777777777777776653 345566666777777777777777777777666432 5666666777
Q ss_pred HHHhc-----------CCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043370 116 MYSRC-----------GCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLY 181 (430)
Q Consensus 116 ~~~~~-----------g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 181 (430)
.|.+. |++++|...|++.. +.+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77776 77777777776643 3356677777777777777777777777777665 56666777777
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
++...|++++|...|++..+. .+.+...+..+..++.+.|++++|...+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777653 1224566667777777777777777776654
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=7e-14 Score=135.22 Aligned_cols=297 Identities=10% Similarity=-0.012 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC-------C----CCHHHHHHHHHHHHHC--CChhHHHHHHHHHHHCCCCCCH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP-------I----RNVIAWITLIAGKAQN--GLAEDVLDQYNLMRMVGFRPDK 72 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~ 72 (430)
..+|+.+..+|...|++++|...|++.. . ....+++.+..++... +++++|+..|++.++.. +-+.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~ 172 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNP 172 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCH
Confidence 3578999999999999999998887642 1 1356777776666654 57999999999998863 3344
Q ss_pred HHHHHHHHH---HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC---CCCHhHHH
Q 043370 73 ITFVSVISS---CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE---YSDVVLWS 142 (430)
Q Consensus 73 ~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~d~~~~~ 142 (430)
..+..+..+ +...++.++|.+.+++.++..+. +..++..+...+.+ .|++++|.+.|++.. +.+...++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~ 251 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHH
Confidence 555554444 34567778899999998887533 66666666655554 467788999998753 45788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc-------------------CcHHHHHHHHHHHhhhc
Q 043370 143 SMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC-------------------GLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------------g~~~~a~~~~~~~~~~~ 203 (430)
.+...|...|++++|+..|++..+.. +-+..++..+...|... +..++|...++...+.
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 329 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA- 329 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-
Confidence 99999999999999999999998863 33455666665554322 3356777888877653
Q ss_pred CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH----HHHHHH-HHHhcCChhHHHHHHHHHhcC-------
Q 043370 204 RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAII----WKTLLS-ACKTHKSTDMAGRIAEEILGV------- 270 (430)
Q Consensus 204 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~----~~~ll~-~~~~~~~~~~a~~~~~~~~~~------- 270 (430)
.+.+...+..+...|...|++++|.+.|++. ...|+... +..+.. .....|+.++|+..+++.+++
T Consensus 330 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 330 -NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp -CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred -CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 2335577888999999999999999999986 44444332 222222 245678899999888877654
Q ss_pred -----------------CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 271 -----------------NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 271 -----------------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
+|.++.+|..|..+|...|++++|.+.+++..+.|-.
T Consensus 409 ~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 409 EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 5777889999999999999999999999998776543
No 37
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1.2e-12 Score=127.45 Aligned_cols=283 Identities=14% Similarity=0.050 Sum_probs=160.6
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHccCCC-CCHHHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 8 AGSSLAHMYMK----SGSLVEGEKVIRLMPI-RNVIAWITLIAGKAQ----NGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 8 ~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
.+..|..+|.. .++.++|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+..+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 153 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSM 153 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 44444555555 5555555555554332 244445555555555 455555555555555443 33444444
Q ss_pred HHHHhc----cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHHHHHH
Q 043370 79 ISSCSE----LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMIAAYG 149 (430)
Q Consensus 79 l~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~ 149 (430)
...+.. .++.++|.+.|++..+.| +...+..|..+|.. .++.++|.+.|+... ..+..++..+...|.
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYY 230 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444443 445555555555555543 44555555555555 555666666555433 234455555555555
Q ss_pred h----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh
Q 043370 150 F----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR 221 (430)
Q Consensus 150 ~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 221 (430)
. .+++++|+.+|++..+.| +...+..+...+.. .++.++|..+|++..+. + +...+..|..+|..
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc
Confidence 4 556666666666665543 33344444444544 56666777776666543 2 34455556666666
Q ss_pred c-----CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh----cc
Q 043370 222 C-----GYLDEAAALIRNMPVKANAIIWKTLLSACKTHK---STDMAGRIAEEILGVNPQDAAPYVLLSNIHAS----AK 289 (430)
Q Consensus 222 ~-----g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g 289 (430)
. +++++|...+++.-...+...+..+...|...| +.++|...+++..+. .++.++..|..+|.. .+
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC
Confidence 5 677777777766522234555666666665545 667777777777665 356777778888877 77
Q ss_pred chhHHHHHHHHHHhCC
Q 043370 290 RWQGVSEFREAMRERN 305 (430)
Q Consensus 290 ~~~~a~~~~~~m~~~g 305 (430)
++++|...+++..+.|
T Consensus 382 ~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQG 397 (490)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCC
Confidence 8888888888777655
No 38
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=3.1e-12 Score=124.53 Aligned_cols=286 Identities=10% Similarity=-0.035 Sum_probs=240.1
Q ss_pred chhHHHHHHHHHHH----cCChHHHHHHHccCC-CCCHHHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHHHH
Q 043370 5 DLVAGSSLAHMYMK----SGSLVEGEKVIRLMP-IRNVIAWITLIAGKAQ----NGLAEDVLDQYNLMRMVGFRPDKITF 75 (430)
Q Consensus 5 ~~~~~~~li~~~~~----~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 75 (430)
|+.....|...|.. .++++.|...|++.. ..+...+..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55677778888888 899999999998765 3478889999999999 999999999999998876 56777
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHHH
Q 043370 76 VSVISSCSE----LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMIA 146 (430)
Q Consensus 76 ~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li~ 146 (430)
..+...+.. .+++++|...|++..+.| +...+..|..+|.. .++.++|.+.|++.. ..+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888877 789999999999998876 67788889999988 889999999998754 457888999999
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 147 AYGF----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 147 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
.|.. .++.++|++.|++..+.| +...+..+...+.. .++.++|..+|++..+. + +...+..+..+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 9988 899999999999998875 55667777777775 78999999999998764 3 45667777778
Q ss_pred Hhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc
Q 043370 219 LGR----CGYLDEAAALIRNMPVKANAIIWKTLLSACKTH-----KSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK 289 (430)
Q Consensus 219 ~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 289 (430)
|.. .+++++|...|++.-...+...+..|...|... ++.++|...+++..+.+ ++.++..|..+|...|
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 877 899999999999883334677777788888877 89999999999998775 4578889999998866
Q ss_pred ---chhHHHHHHHHHHhCC
Q 043370 290 ---RWQGVSEFREAMRERN 305 (430)
Q Consensus 290 ---~~~~a~~~~~~m~~~g 305 (430)
++++|.+.+++..+.|
T Consensus 343 ~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHCC
Confidence 8899999999988765
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.5e-13 Score=121.08 Aligned_cols=205 Identities=13% Similarity=0.046 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4556666666666666666666666666542 33455555555566666666666666665555432 134444444444
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
|...|++ ++|++.|+++.+.+..| +...+..+...+...|++++|...
T Consensus 115 ~~~~g~~-------------------------------~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRY-------------------------------EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCH-------------------------------HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHH-------------------------------HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444 44444444443321222 223344444444455555555555
Q ss_pred HHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
++++.+. .+.+...+..+...|.+.|++++|...++++ ...| +...+..+...+...|+.+.|...++++.+..|.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 5544432 1123444455555555555555555555544 2222 3444555555566666666666666666666664
Q ss_pred CCh
Q 043370 274 DAA 276 (430)
Q Consensus 274 ~~~ 276 (430)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 433
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=2.1e-13 Score=120.04 Aligned_cols=195 Identities=9% Similarity=-0.067 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSC 82 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 82 (430)
..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4678889999999999999999999864 3478899999999999999999999999998864 45778899999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASL-DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
...|++++|...++++.+.+..| +..++..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998733333 56778888889999999999999888754 346778888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
..|+++.+.. +.+...+..+...+...|+.++|.++++.+.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888887753 445666777777888888888888888888754
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.3e-13 Score=122.92 Aligned_cols=195 Identities=10% Similarity=-0.052 Sum_probs=157.7
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCC--CC----HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPI--RN----VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
+..++..+...|.+.|++++|...|++... ++ ..+|..+...|...|++++|+..|++..+.. +.+..++..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 345888999999999999999999987643 22 3458999999999999999999999999864 4567889999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHH-HHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC-
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLI-SMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGK- 153 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~- 153 (430)
...+...|++++|...+++.++.. +.+..++..+. ..|. .+++++|.+.|++.. +.+...|..+...+...|+
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcc
Confidence 999999999999999999998874 34678888888 5555 559999999999865 3467888888888888888
Q ss_pred --hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 154 --GEEAINLFEQMEQKE-FEAND------VTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 154 --~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
+++|...|++..+.. -.|+. .++..+...+...|++++|...++++.+.
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888999999887642 12331 46667777888888888888888888753
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=6.1e-13 Score=118.84 Aligned_cols=223 Identities=9% Similarity=-0.050 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCcHhHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE----LATLGQGQQIHAEVVKAGASLDVGVIS 111 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 111 (430)
+..++..+...|...|++++|+..|++..+. -+..++..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566777777777888888888888877763 245666667777777 778888888888777765 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 112 SLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMIAAYGF----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 112 ~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
.+..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777777 778888877777644 2366777777777777 788888888888877765 44556666666
Q ss_pred hhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 043370 183 CSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR----CGYLDEAAALIRNM-PVKANAIIWKTLLSACKT 253 (430)
Q Consensus 183 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 253 (430)
+.. .++.++|...|++..+. + +...+..+..+|.. .+++++|...|++. ... +...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence 666 77888888888777653 2 34566667777777 77777777777765 222 35566666666776
Q ss_pred ----cCChhHHHHHHHHHhcCCC
Q 043370 254 ----HKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 254 ----~~~~~~a~~~~~~~~~~~p 272 (430)
.++.++|...+++..+.+|
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCC
Confidence 7777888888877777776
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.5e-14 Score=126.64 Aligned_cols=239 Identities=8% Similarity=-0.108 Sum_probs=188.0
Q ss_pred HHcCChHHHHHHHccCCCC-------CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 043370 17 MKSGSLVEGEKVIRLMPIR-------NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLG 89 (430)
Q Consensus 17 ~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 89 (430)
...|++++|...|+++.+. +..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3467899999999876542 46789999999999999999999999999864 457889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+|...++++++... .+..++..+..+|.+.|++++|...|+++. .|+.......+..+...|++++|+..+++....
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999998753 368899999999999999999999999875 343334444555556779999999999888776
Q ss_pred CCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC-----HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 043370 168 EFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR-----LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANA 241 (430)
Q Consensus 168 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 241 (430)
. +++...+. ++..+...++.++|...+....+. .|+ ...+..+...|.+.|++++|...|++. ...|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 3 44544444 667778888889999999988643 332 578889999999999999999999988 556643
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
+.....++...|++++|...+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223344667778888887765
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=2.5e-14 Score=125.15 Aligned_cols=212 Identities=12% Similarity=0.088 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3445555555555556666666555555432 2344445555555555555555555555554432
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
+.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+
T Consensus 88 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 88 ------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1234444555555555555555555555555442 234445555555666666666666666
Q ss_pred HHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 197 DLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
+++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|...++++.+.+|.+
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 665543 1224555666666666667777776666665 2222 46677777777888888888888888888888877
Q ss_pred ChhHHHHHHH
Q 043370 275 AAPYVLLSNI 284 (430)
Q Consensus 275 ~~~~~~l~~~ 284 (430)
+.++..+...
T Consensus 227 ~~~~~~~~~l 236 (243)
T 2q7f_A 227 MLALHAKKLL 236 (243)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=2.7e-13 Score=116.83 Aligned_cols=206 Identities=6% Similarity=-0.055 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------- 73 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------------- 73 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------
Confidence 4455555555555566666665555555432 23344455555555555555555555555544321
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH-GKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGME 194 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 194 (430)
.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|++++|..
T Consensus 74 -------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 74 -------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 2333444444455555 555555555555544222222 3444445555555555555555
Q ss_pred HHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 195 FFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVK--ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
.++++.+. .+.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 55555432 1123445555555555556666655555554 111 234445555555666666666666666666666
Q ss_pred CCCChh
Q 043370 272 PQDAAP 277 (430)
Q Consensus 272 p~~~~~ 277 (430)
|.++..
T Consensus 213 p~~~~~ 218 (225)
T 2vq2_A 213 PYSEEL 218 (225)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 644443
No 46
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=1.2e-12 Score=128.69 Aligned_cols=165 Identities=11% Similarity=0.033 Sum_probs=115.9
Q ss_pred HhHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc
Q 043370 138 VVLWSSMIAAYGF-------HGKGE-------EAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 138 ~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 203 (430)
...|...+..+.+ .|+.+ +|..+|++..+.-.+-+...+..++..+.+.|++++|..+|+++.+.
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~- 350 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI- 350 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-
Confidence 3445555555554 57765 77888887765212334666777777778888888888888888753
Q ss_pred CCccC-H-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 204 RRKPR-L-EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSA-CKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 204 ~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
.|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|+.+.|..+|++.++..|+++..|
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 443 2 46777777778888888888888876 33332 2222222112 3458889999999999988888888889
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 279 VLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 279 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
..++..+.+.|+.++|..++++....+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 899999999999999999999887653
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=3e-13 Score=116.55 Aligned_cols=197 Identities=7% Similarity=-0.056 Sum_probs=162.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45678899999999999999999998764 3468899999999999999999999999998864 5577889999999
Q ss_pred Hhcc-CChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHH
Q 043370 82 CSEL-ATLGQGQQIHAEVVKAGASL-DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEE 156 (430)
Q Consensus 82 ~~~~-g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~ 156 (430)
+... |++++|...++.+.+.+..| +..++..+...|.+.|++++|...|+++. +.+...|..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999 99999999999998832223 46778888889999999999999888754 3467788888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 157 AINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 157 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
|...|++..+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9998888877532145666777777778888888888888887643
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=8.7e-14 Score=131.35 Aligned_cols=265 Identities=12% Similarity=0.060 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-cH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD----KITFVSVISSCSELATLGQGQQIHAEVVKA----GASL-DV 107 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~ 107 (430)
...+..+...+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...++++.+. +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3344444555555555555555555555432 112 133444555555555555555555544322 1111 13
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHH
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGK--------------------GEEAI 158 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~ 158 (430)
.++..+...|...|++++|...|++... .+ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3445555555555555555555554321 11 2345555555666666 66666
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHH
Q 043370 159 NLFEQMEQK----EFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 159 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 229 (430)
+.+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 665554321 11111 234555556666666666666666665432111111 235556666666666666666
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------CChhHHHHHHHHHhccchhHHH
Q 043370 230 ALIRNM----PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------DAAPYVLLSNIHASAKRWQGVS 295 (430)
Q Consensus 230 ~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~ 295 (430)
..+++. +..++ ..++..+...+...|++++|...+++..+..+. ...++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666554 10111 345555666666677777777776666544321 1345666667777777777777
Q ss_pred HHHHHHH
Q 043370 296 EFREAMR 302 (430)
Q Consensus 296 ~~~~~m~ 302 (430)
+.+++..
T Consensus 328 ~~~~~al 334 (406)
T 3sf4_A 328 HFAEKHL 334 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=4.5e-14 Score=133.93 Aligned_cols=265 Identities=11% Similarity=0.032 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCcHh
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK----ITFVSVISSCSELATLGQGQQIHAEVVKA----G-ASLDVG 108 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~ 108 (430)
..+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++.++. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345566778999999999999999998863 2233 46788888899999999999999988653 1 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---------CCHhHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECEY---------SDVVLWSSMIAAYGFHGK-----------------GEEAINLFE 162 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~d~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 162 (430)
++..+...|...|++++|...|++... ....+|..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 788899999999999999999987542 134578888999999999 999999998
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHHHH
Q 043370 163 QMEQK----EFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAALIR 233 (430)
Q Consensus 163 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 233 (430)
+..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86542 1112 2346778888999999999999999988754211112 2378889999999999999999998
Q ss_pred hC-CC---CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------CChhHHHHHHHHHhccchhHHHHHHH
Q 043370 234 NM-PV---KA----NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------DAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 234 ~m-~~---~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+. .. .. ...++..+...+...|++++|...+++..+..+. ...++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 11 11 2567788888899999999999999999865432 24588899999999999999999999
Q ss_pred HHHh
Q 043370 300 AMRE 303 (430)
Q Consensus 300 ~m~~ 303 (430)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=1.9e-12 Score=115.66 Aligned_cols=223 Identities=10% Similarity=-0.043 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSVKTFLECE-YSDVVLWSSMI 145 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li 145 (430)
+..++..+...+...|++++|.+.+++..+. .+...+..+...|.. .|++++|...|++.. ..+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5677888888899999999999999999983 366788889999999 999999999999865 34788999999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh----cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 146 AAYGF----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH----CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 146 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .++.++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888889998 99999999999999874 3 5667788888
Q ss_pred HHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh--
Q 043370 218 LLGR----CGYLDEAAALIRNMPVKANAIIWKTLLSACKT----HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS-- 287 (430)
Q Consensus 218 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 287 (430)
.|.. .+++++|...|++.-...+...+..+...+.. .++.++|...+++..+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999987222367778888888999 9999999999999998876 6788999999999
Q ss_pred --ccchhHHHHHHHHHHhCC
Q 043370 288 --AKRWQGVSEFREAMRERN 305 (430)
Q Consensus 288 --~g~~~~a~~~~~~m~~~g 305 (430)
.+++++|.+.+++..+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999987766
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=1.7e-13 Score=125.49 Aligned_cols=265 Identities=12% Similarity=0.051 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CcHhH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD----KITFVSVISSCSELATLGQGQQIHAEVVKA----GAS-LDVGV 109 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~ 109 (430)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34444555666677777777776666542 222 244556666666667777776666655432 111 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGK--------------------GEEAINL 160 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~~~ 160 (430)
+..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|++.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66666777777777777776665431 11 3366666777777777 7777777
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHH
Q 043370 161 FEQMEQK----EFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 161 ~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665432 1111 1345666777777888888888888776643111111 23677778888888888888888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------CChhHHHHHHHHHhccchhHHHHH
Q 043370 232 IRNM----PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------DAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 232 ~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
+++. +..++ ..++..+...+...|++++|...+++..+..|. ...++..+..+|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7765 11111 456677777788889999999988888755432 244777888899999999999999
Q ss_pred HHHHHhC
Q 043370 298 REAMRER 304 (430)
Q Consensus 298 ~~~m~~~ 304 (430)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8887653
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=4.1e-14 Score=133.61 Aligned_cols=291 Identities=12% Similarity=0.008 Sum_probs=222.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHccCC--CC-C----HHHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-
Q 043370 3 ELDLVAGSSLAHMYMKSGSLVEGEKVIRLMP--IR-N----VIAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRP- 70 (430)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 70 (430)
++....+..+...+.+.|++++|...|++.. .| + ...|..+...|...|++++|+..|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3445567788889999999999999998764 22 3 357888999999999999999999987543 2122
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCC--------------------HHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGAS-LD----VGVISSLISMYSRCGC--------------------LDD 125 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~ 125 (430)
...++..+...+...|++++|...+.+..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456778888999999999999999988663211 11 4578889999999999 999
Q ss_pred HHHHHhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhhcCcHHH
Q 043370 126 SVKTFLECEY-----S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN----DVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 126 A~~~~~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~ 191 (430)
|...|++... . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9998876431 1 245788899999999999999999999865310 122 2377888889999999999
Q ss_pred HHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhH
Q 043370 192 GMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAALIRNM----PVKAN----AIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 192 a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~ 259 (430)
|...+++..+...-.++ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988653111111 567888999999999999999998876 11112 5577788888999999999
Q ss_pred HHHHHHHHhcCC------CCCChhHHHHHHHHHhccchhH
Q 043370 260 AGRIAEEILGVN------PQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 260 a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
|...+++..++. +....++..+...|...|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999987553 2235577788888888887643
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=6.9e-13 Score=124.12 Aligned_cols=241 Identities=9% Similarity=0.001 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGL-AEDVLDQYNLMRMVGFRPDKITFVSVISS 81 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 81 (430)
..+|+.+...|.+.|++++|+..|++.. ..+...|+.+...+...|+ +++|+..|++.++.. +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3578889999999999999999999865 3478899999999999997 999999999999874 4477889999999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHh-cCChHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGF-HGKGEEA 157 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~-~g~~~~A 157 (430)
+...|++++|...++++++.... +..+|..+..++.+.|++++|+..|+++. ..+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999998644 88999999999999999999999999865 4578999999999999 6666888
Q ss_pred -----HHHHHHHHHCCCCCCHHHHHHHHHHhhhcC--cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC-------
Q 043370 158 -----INLFEQMEQKEFEANDVTFVSLLYACSHCG--LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG------- 223 (430)
Q Consensus 158 -----~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g------- 223 (430)
+..|++.++.. +-+...|..+...+...| +.++|.+.+..+ + ..+.+...+..+.++|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 58899888853 335678888888888888 689999999887 3 33446788899999998874
Q ss_pred --CHHHHHHHHHhC--CCCCC-HHHHHHHHHHHH
Q 043370 224 --YLDEAAALIRNM--PVKAN-AIIWKTLLSACK 252 (430)
Q Consensus 224 --~~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~ 252 (430)
.+++|.++++++ ...|. ...|..+...+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 368999999998 56674 566776666544
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.2e-13 Score=120.82 Aligned_cols=197 Identities=8% Similarity=0.036 Sum_probs=154.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
....+..+...+...|++++|...|+++. +.+...|..+...|...|++++|++.|++..+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45567777888888888888888888764 3467888889999999999999999999998763 4467888889999
Q ss_pred hhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 043370 183 CSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 260 (430)
+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|...++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999865 2346788899999999999999999999987 3333 678888899999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
...++++.+..|.++.++..+..+|...|++++|...+++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999899999999999999999999999999987643
No 55
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=1.1e-11 Score=121.95 Aligned_cols=194 Identities=7% Similarity=0.023 Sum_probs=153.9
Q ss_pred cHhHHHHHHHHHHh-------cCCHH-------HHHHHHhccCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 106 DVGVISSLISMYSR-------CGCLD-------DSVKTFLECEY----SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 106 ~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+..+|..++..+.+ .|+++ +|..+|++... .+...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 44555555666654 68876 89999987542 36889999999999999999999999999985
Q ss_pred CCCCCH--HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CH
Q 043370 168 EFEAND--VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDL-LGRCGYLDEAAALIRNM-PVKA-NA 241 (430)
Q Consensus 168 g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~ 241 (430)
.|+. ..|...+..+.+.|++++|.++|++..+. .| +...|...... +...|+.++|..+|++. ...| +.
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence 5653 47888888888999999999999999864 33 33334333322 34689999999999977 3334 57
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh----hHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAA----PYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..|..++..+...|+.+.|..+|++.+...|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988765554 7778888888999999999999988653
No 56
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=4.5e-12 Score=122.46 Aligned_cols=295 Identities=10% Similarity=-0.033 Sum_probs=212.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCC------------CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMP------------IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV-----G- 67 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 67 (430)
...||.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4578999999999999999999887642 224678999999999999999999999887642 1
Q ss_pred CCC-CHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH---HhcCCHHHHHHHHhcc---CCCCH
Q 043370 68 FRP-DKITFVSVISSCSE--LATLGQGQQIHAEVVKAGASLDVGVISSLISMY---SRCGCLDDSVKTFLEC---EYSDV 138 (430)
Q Consensus 68 ~~p-~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~---~~~d~ 138 (430)
..+ ...++.....++.. .+++++|...|++.++..+. +...+..+..++ ...++.++|++.|++. .+.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 112 34556655555544 45789999999999987543 666666666554 3456777788877754 34566
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHH
Q 043370 139 VLWSSMIAAYGF----HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTC 214 (430)
Q Consensus 139 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 214 (430)
..+..+...+.. .|+.++|.+++++..... +.+..++..+...+...|++++|...+.+..+. .+.+...+..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence 777766655554 467889999999988763 456778888999999999999999999999864 2235566776
Q ss_pred HHHHHhhc-------------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 215 VVDLLGRC-------------------GYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 215 li~~~~~~-------------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
+...|... +.+++|...+++. ...| +..+|..+...+...|++++|...|+++++.+|+
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 76665432 2356677777665 2333 4567788888899999999999999999988874
Q ss_pred CCh---hHHHHHHH-HHhccchhHHHHHHHHHHhC
Q 043370 274 DAA---PYVLLSNI-HASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 274 ~~~---~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 304 (430)
+.. .+..+... +...|++++|...+++..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 332 23334333 45789999999999887653
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.53 E-value=1e-11 Score=128.80 Aligned_cols=263 Identities=9% Similarity=0.075 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043370 6 LVAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSEL 85 (430)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 85 (430)
+.+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.++.+|++.
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 345555556666666666666665443 345555556666666666666666655544432 2222222355555555
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
+++++...+. + .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++.
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 5555322221 1 223444445666666666666666666653 35666666666666666666666654
Q ss_pred HCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 043370 166 QKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAII 243 (430)
Q Consensus 166 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 243 (430)
.+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++.. +.+| ....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 24456666666666666666666554432 235566778888999999999999999776 5544 3455
Q ss_pred HHHHHHHHHhc--CChhHHHHHHHHHhcCCC-----CCChhHHHHHHHHHhccchhHHHH
Q 043370 244 WKTLLSACKTH--KSTDMAGRIAEEILGVNP-----QDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 244 ~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
|.-|...+.+. ++..++.++|..-..+.| .+...|.-++..|.+.|+++.|..
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 65565555554 455566666665555544 467789999999999999998884
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=8.3e-12 Score=113.68 Aligned_cols=218 Identities=10% Similarity=0.068 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 54 EDVLDQYNLMRMVGFRPDKITFVSVISSCS-------ELATL-------GQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
++|+.+|++.++.. +-+...|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888877652 445666776666654 34775 7888888888873123366788888888888
Q ss_pred cCCHHHHHHHHhccCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-hcCcHHHHHH
Q 043370 120 CGCLDDSVKTFLECEY--S-DVV-LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS-HCGLKEKGME 194 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~--~-d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 194 (430)
.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887542 2 343 78888888888899999999999888763 334445544333322 3689999999
Q ss_pred HHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 195 FFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-P---VKA--NAIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999887642 235678888888888999999999998887 2 344 46688888888888999999999999998
Q ss_pred cCCCCCC
Q 043370 269 GVNPQDA 275 (430)
Q Consensus 269 ~~~p~~~ 275 (430)
+..|.+.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888644
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=2.5e-13 Score=128.74 Aligned_cols=265 Identities=10% Similarity=-0.018 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCC--CC-CH----HHHHHHHHHHHHCCChhHHHHHHHHHHHC----CC-CCCHHHH
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMP--IR-NV----IAWITLIAGKAQNGLAEDVLDQYNLMRMV----GF-RPDKITF 75 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~ 75 (430)
.+..+...+...|++++|...|++.. .| +. ..|..+...|...|++++|+..|++..+. +- +....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 44567778899999999999998764 22 33 57889999999999999999999988653 11 2234667
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----C-CCCcHhHHHHHHHHHHhcCC-----------------HHHHHHHHhcc
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKA----G-ASLDVGVISSLISMYSRCGC-----------------LDDSVKTFLEC 133 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~ 133 (430)
..+...+...|++++|...++++.+. + .+....++..+...|...|+ +++|...|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88888999999999999999987664 1 12235678889999999999 99999988775
Q ss_pred CC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 134 EY---------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN----DVTFVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 134 ~~---------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
.. ....+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 32 1345788899999999999999999999866311 012 237788889999999999999999988
Q ss_pred hhhcCCcc----CHhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 200 VKKYRRKP----RLEHYTCVVDLLGRCGYLDEAAALIRNM-------PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 200 ~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
.+...-.. ....+..+...|...|++++|...+++. +..+ ...++..+...+...|+.++|...+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 75321111 2467888999999999999999999876 1111 2446778888899999999999999999
Q ss_pred hcCCC
Q 043370 268 LGVNP 272 (430)
Q Consensus 268 ~~~~p 272 (430)
.++.+
T Consensus 370 l~~~~ 374 (411)
T 4a1s_A 370 LQLAX 374 (411)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 87765
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=4.4e-13 Score=122.69 Aligned_cols=266 Identities=12% Similarity=0.013 Sum_probs=204.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC---CCC----HHHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP---IRN----VIAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRP-DKIT 74 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t 74 (430)
..+......+.+.|++++|...|++.. ..+ ...|..+...|...|++++|++.+++..+. +-.| ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 445566788899999999999999864 223 467889999999999999999999987643 2122 2456
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCC--------------------HHHHHHH
Q 043370 75 FVSVISSCSELATLGQGQQIHAEVVKAGAS-LD----VGVISSLISMYSRCGC--------------------LDDSVKT 129 (430)
Q Consensus 75 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 129 (430)
+..+...+...|++++|...+.+..+.... ++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 778888999999999999999987653211 12 3478889999999999 9999998
Q ss_pred HhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhhcCcHHHHHHH
Q 043370 130 FLECEY-----S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN----DVTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 130 ~~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
+++... . ....+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876531 1 245788888999999999999999998865310 111 23777888899999999999999
Q ss_pred HHHHhhhcCCccC----HhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 043370 196 FDLMVKKYRRKPR----LEHYTCVVDLLGRCGYLDEAAALIRNM-------PVKA-NAIIWKTLLSACKTHKSTDMAGRI 263 (430)
Q Consensus 196 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 263 (430)
+++..+...-.++ ...+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9988653111111 567888999999999999999999876 1111 244677888889999999999999
Q ss_pred HHHHhcCCC
Q 043370 264 AEEILGVNP 272 (430)
Q Consensus 264 ~~~~~~~~p 272 (430)
+++..++.+
T Consensus 326 ~~~a~~~~~ 334 (338)
T 3ro2_A 326 AEKHLEISR 334 (338)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 999987765
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=3.6e-13 Score=130.40 Aligned_cols=208 Identities=12% Similarity=0.009 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL-DDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 163 (430)
++++.+.++...+.. +.+...+..+...|...|++ ++|++.|++.. +.+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666555442 34778888888899999999 99999888754 44678899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhhc---------CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc--------CCHH
Q 043370 164 MEQKEFEANDVTFVSLLYACSHC---------GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC--------GYLD 226 (430)
Q Consensus 164 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 226 (430)
..+. .|+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9885 57778888888899998 9999999999998864 233578888899999888 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHH
Q 043370 227 EAAALIRNM-PVKA----NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 227 ~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
+|.+.|++. ...| +...|..+...|...|++++|...++++.+++|.++.++..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999987 4455 6888999999999999999999999999999999999999999999999999999876543
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.50 E-value=2.3e-11 Score=126.18 Aligned_cols=238 Identities=12% Similarity=0.064 Sum_probs=183.7
Q ss_pred CChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 20 GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 20 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....
T Consensus 1090 ~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444443332 4567888888888999999998888553 367778888888999999999999988777
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 100 KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 100 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
+.. ++..+.+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rL 1227 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 1227 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHH
Confidence 754 34444446888888888888644443 3556677777888888899999999999874 378888
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043370 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 180 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~ 259 (430)
...+.+.|++++|.+.+++.. +..+|..+..++...|++..|......+ ..++..+..++..|...|.+++
T Consensus 1228 A~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHH
Confidence 888999999999988888762 4578888888888888888888877653 3355566688889999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 260 AGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 260 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
|+.+++..++++|.+...|.-|..+|++.
T Consensus 1299 AI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 99999999999988888888888877754
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=3.5e-12 Score=106.55 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
..|..+...|.+.|++++|++.|++..+.. +-+..++..+...+.+.|++++|...+...... .+.+...+..+...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHH
Confidence 344444444444444444444444444431 122334444444444445555554444444332 11223344444444
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHH
Q 043370 219 LGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
+...++++.|...+++. ...| +...|..+...+...|++++|+..+++.++.+|.++.+|..++.+|...|++++|.+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555544443 1122 344455555555555555555555555555555555555555666666666666665
Q ss_pred HHHHHHh
Q 043370 297 FREAMRE 303 (430)
Q Consensus 297 ~~~~m~~ 303 (430)
.+++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=1.7e-12 Score=122.02 Aligned_cols=285 Identities=10% Similarity=-0.008 Sum_probs=203.3
Q ss_pred HHHcCChHHHHHHHccCC--------CCCHHHHHHHHHH--HHHCCChhHHH-----------HHHHHHHHCCCCCCHHH
Q 043370 16 YMKSGSLVEGEKVIRLMP--------IRNVIAWITLIAG--KAQNGLAEDVL-----------DQYNLMRMVGFRPDKIT 74 (430)
Q Consensus 16 ~~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~t 74 (430)
+.+.+++++|..+++.+. .+++..|-.++.. ....++++.+. +.++.+.... ++...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 457899999999887753 2344444444432 22233344444 6666665421 12222
Q ss_pred HH------HHHHHHhccCChHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----C--
Q 043370 75 FV------SVISSCSELATLGQGQQIHAEVVKA----GASL-DVGVISSLISMYSRCGCLDDSVKTFLECEY-----S-- 136 (430)
Q Consensus 75 ~~------~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-- 136 (430)
+. .....+...|++++|...+++..+. +-++ ...++..+...|...|++++|...+++... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 22 2556677889999999999999764 2111 346788999999999999999998877531 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc---CC
Q 043370 137 ---DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY---RR 205 (430)
Q Consensus 137 ---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~ 205 (430)
...+++.+...|...|++++|++.|++..+... .++ ..++..+...|...|++++|...+++..+.. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 245788899999999999999999998865310 111 2478889999999999999999999987621 22
Q ss_pred -ccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhcCCCCC
Q 043370 206 -KPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV-----KAN-AIIWKTLLSACKTHKS---TDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 206 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~ 274 (430)
+....++..+...|.+.|++++|...+++. .. .|. ...+..+...+...|+ .+.|..++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 234577889999999999999999999876 11 222 2335566666888888 77777777775 223445
Q ss_pred ChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...+..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=9.2e-12 Score=113.41 Aligned_cols=227 Identities=8% Similarity=0.009 Sum_probs=179.2
Q ss_pred hhHHHHHHHHHHHc----CCh----HHHHHHHccCC---CCCHHHHHHHHHHHH-------HCCCh-------hHHHHHH
Q 043370 6 LVAGSSLAHMYMKS----GSL----VEGEKVIRLMP---IRNVIAWITLIAGKA-------QNGLA-------EDVLDQY 60 (430)
Q Consensus 6 ~~~~~~li~~~~~~----g~~----~~A~~~f~~m~---~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~ 60 (430)
...|...++.-.+. ++. +.|..+|++.. ..+...|..++..+. +.|++ ++|..+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 45677777775554 233 67888898775 347889998888776 45886 9999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHhccCC---
Q 043370 61 NLMRMVGFRP-DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVG-VISSLISMYSRCGCLDDSVKTFLECEY--- 135 (430)
Q Consensus 61 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--- 135 (430)
++..+. +.| +...|..++..+.+.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++..+
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 999973 244 5568999999999999999999999999985322 344 899999999999999999999998653
Q ss_pred CCHhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHH
Q 043370 136 SDVVLWSSMIAAY-GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHY 212 (430)
Q Consensus 136 ~d~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 212 (430)
.+...|....... ...|+.++|..+|++..+.. +-+...+..++..+.+.|+.++|..+|++......++| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3444554433332 23699999999999998762 34677888889999999999999999999987522455 46788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC
Q 043370 213 TCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m 235 (430)
..++..+.+.|+.++|..+++++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999887
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=2.7e-13 Score=122.99 Aligned_cols=166 Identities=9% Similarity=0.032 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------C
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMV-------GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA------G 102 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g 102 (430)
+..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999998763 22334566777888888889999999988888764 2
Q ss_pred C-CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 043370 103 A-SLDVGVISSLISMYSRCGCLDDSVKTFLECEY-----------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK--- 167 (430)
Q Consensus 103 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 167 (430)
. +....++..+...|...|++++|...|++... .....|..+...|...|++++|++.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22356677778888888888888887776431 12345666777777777777777777776553
Q ss_pred ---CCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 168 ---EFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 168 ---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
+..|+ ..++..+...+...|++++|..+++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 34566666677777777777777777664
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.5e-13 Score=120.96 Aligned_cols=246 Identities=9% Similarity=-0.007 Sum_probs=152.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHccCCC--------C---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHC------C
Q 043370 5 DLVAGSSLAHMYMKSGSLVEGEKVIRLMPI--------R---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMV------G 67 (430)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 67 (430)
+..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788888889999999999988887643 1 3467788888899999999999999888764 2
Q ss_pred C-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC----
Q 043370 68 F-RPDKITFVSVISSCSELATLGQGQQIHAEVVKA------GA-SLDVGVISSLISMYSRCGCLDDSVKTFLECEY---- 135 (430)
Q Consensus 68 ~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 135 (430)
- +....++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|...|++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223566778888888999999999999888764 22 22456678888889999999999888876532
Q ss_pred -------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC
Q 043370 136 -------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR 208 (430)
Q Consensus 136 -------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 208 (430)
....++..+...|...|++++|...|+++.+.. |+. .+..+-. .... ....
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~---~~~~----------------~~~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVDD---ENKP----------------IWMH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CC----------------HHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCCc---chHH----------------HHHH
Confidence 134567888888999999999999998887631 110 0000000 0000 0000
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNMP-VKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
...+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++.+++.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1112222223333444444555554442 223 345566666667777777777777776665544
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=2.1e-11 Score=101.85 Aligned_cols=161 Identities=11% Similarity=0.106 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
+..|..+...|.+.|++++|++.|++.++.. +-+..++..+..++...|++++|...+......... +..++..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3344444444444455555555544444432 223344444444444444554444444444443222 33444444444
Q ss_pred HHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
+...++++.|...+.+.. +.+...|..+...|.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 444444444444444322 2234444444445555555555555555444432 223344444444555555555555
Q ss_pred HHHHHHh
Q 043370 194 EFFDLMV 200 (430)
Q Consensus 194 ~~~~~~~ 200 (430)
+.|++..
T Consensus 162 ~~~~~al 168 (184)
T 3vtx_A 162 KYFKKAL 168 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.42 E-value=8.3e-12 Score=120.04 Aligned_cols=189 Identities=10% Similarity=0.043 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHhcC----CHHHHHHHHhccCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 108 GVISSLISMYSRCG----CLDDSVKTFLECEYSDVVLWSSMIAAYGFHG---KGEEAINLFEQMEQKEFEANDVTFVSLL 180 (430)
Q Consensus 108 ~~~~~li~~~~~~g----~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll 180 (430)
.....|..+|...+ +.+.+..++......++.++..|...|...| +.++|++.|++..+.| .++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 34445555666555 4555666666666667778888999999999 8999999999998887 55666556666
Q ss_pred HHhhhc----CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH-H--hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043370 181 YACSHC----GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL-L--GRCGYLDEAAALIRNMPVKANAIIWKTLLSACKT 253 (430)
Q Consensus 181 ~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 253 (430)
..|... ++.++|..+|+... +-+...+..|..+ | ...|++++|.+.|++.-...+...+..|...|.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY- 294 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 666655 78999999999886 2355666777776 4 568999999999998732236777777777776
Q ss_pred cC-----ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh----ccchhHHHHHHHHHHhCCC
Q 043370 254 HK-----STDMAGRIAEEILGVNPQDAAPYVLLSNIHAS----AKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 254 ~~-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 306 (430)
.| +.++|...|++.. |.++.++..|..+|.. ..++++|...+++..+.|.
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 55 8999999999987 7788899999988887 4488999999998887764
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=1.7e-11 Score=114.96 Aligned_cols=301 Identities=10% Similarity=0.009 Sum_probs=208.3
Q ss_pred CCCchhHHHHHHHHH--HHcCChHHHHHHHccCC--------CCCHHHHHHHHHH--HHHCCChhHHH---------HHH
Q 043370 2 FELDLVAGSSLAHMY--MKSGSLVEGEKVIRLMP--------IRNVIAWITLIAG--KAQNGLAEDVL---------DQY 60 (430)
Q Consensus 2 ~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~--~~~~g~~~~A~---------~~~ 60 (430)
..|...+-+.|-+.| .+.+++++|.++++.+. .+++..|-.|+.. ....+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 346677888888888 88999999998887643 2244444544442 11112222222 555
Q ss_pred HHHHHCCCCCCH-H---HHHHHHHHHhccCChHHHHHHHHHHHHcC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 043370 61 NLMRMVGFRPDK-I---TFVSVISSCSELATLGQGQQIHAEVVKAG--AS---LDVGVISSLISMYSRCGCLDDSVKTFL 131 (430)
Q Consensus 61 ~~m~~~g~~p~~-~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 131 (430)
+.+.....+.+. . .+......+...|++++|...++++.+.. .+ ....++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555432111111 1 22334455678899999999999987642 11 134678889999999999999998887
Q ss_pred ccCC-----C-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 132 ECEY-----S-----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK----EFEA-NDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 132 ~~~~-----~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
+... + ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6431 1 2457888999999999999999999987653 1111 2356778889999999999999999
Q ss_pred HHHhhhc---CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHH
Q 043370 197 DLMVKKY---RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM----PV--KAN-AIIWKTLLSACKTHKS---TDMAGRI 263 (430)
Q Consensus 197 ~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~~~---~~~a~~~ 263 (430)
++..+.. +.+....++..+...|.+.|++++|...+++. +. .|. ...+..+...+...++ .+.|...
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9987611 22223677888999999999999999999876 11 222 3345555555777777 7777777
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 264 AEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 264 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 326 ~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7762 22233456778899999999999999999987743
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=7.6e-12 Score=121.07 Aligned_cols=208 Identities=9% Similarity=-0.036 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 043370 53 AEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL-GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFL 131 (430)
Q Consensus 53 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 131 (430)
++++++.+++..... +.+...+..+..++...|++ ++|.+.++++++.... +..++..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777766542 45778889999999999999 9999999999987533 68899999999999999999999999
Q ss_pred ccC--CCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc--------CcHHHH
Q 043370 132 ECE--YSDVVLWSSMIAAYGFH---------GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC--------GLKEKG 192 (430)
Q Consensus 132 ~~~--~~d~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a 192 (430)
+.. .|+...|..+...|... |++++|++.|++..+.. +-+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 864 46678899999999999 99999999999998863 44577888898999888 999999
Q ss_pred HHHHHHHhhhcCCcc----CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043370 193 MEFFDLMVKKYRRKP----RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEE 266 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 266 (430)
...|++..+. .| +...|..+..+|.+.|++++|.+.|++. ...| +...|..+...+...|+.++|...+.+
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999864 34 7788999999999999999999999987 4445 566788888888888888888775543
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=4.4e-10 Score=104.95 Aligned_cols=263 Identities=10% Similarity=-0.066 Sum_probs=172.9
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HhHHH
Q 043370 41 ITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI----TFVSVISSCSELATLGQGQQIHAEVVKAGAS-LD----VGVIS 111 (430)
Q Consensus 41 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~ 111 (430)
..+...+...|++++|...+++........+.. ++..+...+...|++++|...+++..+.... ++ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455667888888888888877653222222 3455566677788888888888777653111 11 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHH
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEY----------S-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE--A--NDVTF 176 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~----------~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~ 176 (430)
.+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677788888888888888776431 1 2345566777888888888888888887654211 1 23456
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT-----CVVDLLGRCGYLDEAAALIRNM-PVKAN-----AIIWK 245 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~ 245 (430)
..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6777778888999999888888764311111111111 2334577889999999988887 22221 23456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCC-----C-ChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 246 TLLSACKTHKSTDMAGRIAEEILGVNPQ-----D-AAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 246 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.+...+...|++++|...+++.....+. + ...+..+..++...|++++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6777788889999999999888644321 1 23667778888899999999988887654
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.6e-11 Score=123.88 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=99.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHH
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVV 216 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 216 (430)
+.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|.+.|++..+. .| +...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4455566666666666666666666655531 223455556666666666666666666665542 23 345566666
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHH
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGV 294 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 294 (430)
.+|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666655 3334 4556666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 043370 295 SEFREAMR 302 (430)
Q Consensus 295 ~~~~~~m~ 302 (430)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=3.9e-11 Score=99.61 Aligned_cols=163 Identities=10% Similarity=0.000 Sum_probs=86.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYAC 183 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 183 (430)
...+..+...|...|++++|...|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455666667777777777777766542 345666666666666677777777666666542 33445555555566
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 261 (430)
...|++++|..+++++.+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665543 1223344444444444444444444444443 1111 2334444444444444444444
Q ss_pred HHHHHHhcCCC
Q 043370 262 RIAEEILGVNP 272 (430)
Q Consensus 262 ~~~~~~~~~~p 272 (430)
..++++.+..|
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 44444444433
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=2.6e-10 Score=94.58 Aligned_cols=157 Identities=12% Similarity=0.080 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCS 83 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 83 (430)
..+..+...|...|++++|...|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566666666777777777766542 245566666666666666666666666666542 334555555666666
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINL 160 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~ 160 (430)
..|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++.. +.+...|..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666665543 2244445555555555555555555554432 22334444444444444555555544
Q ss_pred HHHHH
Q 043370 161 FEQME 165 (430)
Q Consensus 161 ~~~m~ 165 (430)
+++..
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=1.3e-10 Score=109.18 Aligned_cols=228 Identities=9% Similarity=-0.027 Sum_probs=179.4
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CC----CcHhHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVG-FRPD----KITFVSVISSCSELATLGQGQQIHAEVVKAG--AS----LDVGVIS 111 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~----~~~~~~~ 111 (430)
....+...|++++|+..|++..+.- -.|| ..++..+...+...|+++.|...+.+..+.- .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5566889999999999999997631 0122 3578888999999999999999999887631 11 1245788
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 043370 112 SLISMYSRCGCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQK----EF-EANDVTFV 177 (430)
Q Consensus 112 ~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 177 (430)
.+...|...|++++|...|++... ++ ..+++.+...|...|++++|++.|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999987542 12 257888999999999999999999998762 33 33456788
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcC---CccCHhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYR---RKPRLEHYTCVVDLLGRCGY---LDEAAALIRNMPVKAN-AIIWKTLLSA 250 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 250 (430)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999998775321 12223346778888999999 9999999999965554 4466778888
Q ss_pred HHhcCChhHHHHHHHHHhcC
Q 043370 251 CKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~ 270 (430)
|...|++++|...+++..++
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=1e-10 Score=101.28 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHH
Q 043370 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMI 145 (430)
Q Consensus 69 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li 145 (430)
+.|+..+......+...|++++|...|+..++...+++...+..+..+|.+.|++++|...|++.. +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346788888999999999999999999999998764678888889999999999999999999764 34678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC---HhHHHHH
Q 043370 146 AAYGFHGKGEEAINLFEQMEQKEFEAND-------VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR---LEHYTCV 215 (430)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 215 (430)
..|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999998863 2334 4577778888899999999999999975 3554 5677788
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 216 VDLLGRCGYL--DEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 216 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
..+|...|+. ++|..+ . ..+...|.... ....+.+++|...+++..+++|.++.+...+...
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766653 332222 1 12344444433 3445668999999999999999887776666544
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=1e-09 Score=102.42 Aligned_cols=263 Identities=10% Similarity=0.013 Sum_probs=188.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHccC----CCCCH----HHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCH----HHH
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLM----PIRNV----IAWITLIAGKAQNGLAEDVLDQYNLMRMVGF-RPDK----ITF 75 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~ 75 (430)
...+...+...|++++|...+++. +..+. ..++.+...+...|++++|...+++..+... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344556777899999999998763 22333 2567777889999999999999998865310 1122 335
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCC--C-cHhHHHHHHHHHHhcCCHHHHHHHHhccC----C---C-CHhH
Q 043370 76 VSVISSCSELATLGQGQQIHAEVVKA----GAS--L-DVGVISSLISMYSRCGCLDDSVKTFLECE----Y---S-DVVL 140 (430)
Q Consensus 76 ~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~---~-d~~~ 140 (430)
..+...+...|++++|...+++..+. +.. | ...++..+...|...|++++|...+++.. . + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888999999999999988653 222 2 34566778899999999999999998743 1 1 2356
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHhhhcCcHHHHHHHHHHHhhhcCCcc--CHhHH
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DVTFV-----SLLYACSHCGLKEKGMEFFDLMVKKYRRKP--RLEHY 212 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 212 (430)
|..+...+...|++++|...+++.....-.++ ...+. ..+..+...|+.++|...++.........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 78888899999999999999999865321211 11121 233447789999999999998865311111 12356
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 043370 213 TCVVDLLGRCGYLDEAAALIRNM-------PVKANA-IIWKTLLSACKTHKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 271 (430)
..+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77888999999999999998876 211222 255566677899999999999999987554
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=2.8e-10 Score=98.43 Aligned_cols=190 Identities=9% Similarity=-0.008 Sum_probs=132.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043370 105 LDVGVISSLISMYSRCGCLDDSVKTFLECE---Y-SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLL 180 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 180 (430)
.|+..+..+...|.+.|++++|...|++.. + ++...|..+..++...|++++|++.|++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 356777778888888888888888887643 3 667777778888888888888888888887753 22456677777
Q ss_pred HHhhhcCcHHHHHHHHHHHhhhcCCccCH-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 043370 181 YACSHCGLKEKGMEFFDLMVKKYRRKPRL-------EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN---AIIWKTLLS 249 (430)
Q Consensus 181 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~ 249 (430)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 88888888888888888887542 1233 45677777777888888888888776 55565 345555555
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 5543 344556666666665544444333 34556679999999887654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=2.6e-10 Score=115.07 Aligned_cols=159 Identities=11% Similarity=-0.012 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|.+.|++.++.... +..+++.+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444444444444444444444444431 122344444444444444555554444444443322 344444444455
Q ss_pred HhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHH
Q 043370 118 SRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGME 194 (430)
Q Consensus 118 ~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 194 (430)
.+.|++++|++.|++.. ..+...|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence 55555555544444322 2234445555555555555555555555544431 1123444444445555555544444
Q ss_pred HHHHH
Q 043370 195 FFDLM 199 (430)
Q Consensus 195 ~~~~~ 199 (430)
.++++
T Consensus 167 ~~~ka 171 (723)
T 4gyw_A 167 RMKKL 171 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=6.4e-11 Score=105.48 Aligned_cols=153 Identities=7% Similarity=-0.006 Sum_probs=85.1
Q ss_pred HCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCcHhHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMV-------GFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA------GA-SLDVGVISSLI 114 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 114 (430)
..|++++|+.+|++.++. ..+....++..+...+...|++++|...++++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445566666666555431 11223455666777777777777777777776653 11 12345566666
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 043370 115 SMYSRCGCLDDSVKTFLECEY-----------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK------EFEA-NDVTF 176 (430)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~ 176 (430)
..|...|++++|...|++... ....+|..+...|...|++++|+..|++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 666777777766666655321 12345555666666666666666666665543 1122 13345
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
..+...+...|++++|..++++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555566666666666655543
No 82
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.23 E-value=1.6e-09 Score=104.10 Aligned_cols=281 Identities=12% Similarity=0.003 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHcCCh---HHHHHHHccCCCCCHHHHHHHHHHHHHCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSL---VEGEKVIRLMPIRNVIAWITLIAGKAQNG-----LAEDVLDQYNLMRMVGFRPDKITFVSV 78 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~l 78 (430)
..+..|..+|...|+. ++|...|++..+.+...+..|...+...+ ++++|+..|++..+.|. |+ .+..+
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~L 112 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPL 112 (452)
T ss_dssp TGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHH
Confidence 3444566667777777 88888888877667777777777555555 67888888888877652 22 23333
Q ss_pred HHHHhc-----------------------------------cCC----hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 79 ISSCSE-----------------------------------LAT----LGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 79 l~~~~~-----------------------------------~g~----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
...+.. .+. .+.+..++... ...++..+..|..+|.+
T Consensus 113 g~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a----~~~~~~a~~~Lg~~~~~ 188 (452)
T 3e4b_A 113 AMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA----LNTTDICYVELATVYQK 188 (452)
T ss_dssp HHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH----TTTCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH----HcCCHHHHHHHHHHHHH
Confidence 333322 221 22222222222 23344588899999999
Q ss_pred cC---CHHHHHHHHhccC---CCCHhHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-h--hhc
Q 043370 120 CG---CLDDSVKTFLECE---YSDVVLWSSMIAAYGFH----GKGEEAINLFEQMEQKEFEANDVTFVSLLYA-C--SHC 186 (430)
Q Consensus 120 ~g---~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~ 186 (430)
.| +.++|.+.|+... .++...+..+...|... +++++|++.|++.. .| +...+..+... + ...
T Consensus 189 ~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 189 KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGG
T ss_pred cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCC
Confidence 99 9999999998754 34556667788777655 79999999999987 43 44455555555 3 568
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG-----YLDEAAALIRNMPVKANAIIWKTLLSACKT----HKST 257 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~ 257 (430)
++.++|..+|++..+. | +...+..|..+|. .| ++++|...|++.- ..+...+..|...|.. ..+.
T Consensus 265 ~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCH
T ss_pred CCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCH
Confidence 9999999999998765 4 5677778888887 55 9999999999988 5577788777777766 3499
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHh----ccchhHHHHHHHHHHhCCC
Q 043370 258 DMAGRIAEEILGVNPQDAAPYVLLSNIHAS----AKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 306 (430)
++|...+++..+.+ ++.+...|..+|.. ..+.++|...++.-.+.|.
T Consensus 339 ~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 339 QKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999988754 57788889999875 5689999999999887774
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=3.5e-10 Score=102.05 Aligned_cols=191 Identities=8% Similarity=-0.001 Sum_probs=97.1
Q ss_pred HhccCChHHHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKA----GASLD-VGVISSLISMYSRCGCLDDSVKTFLECEY-----SD----VVLWSSMIAA 147 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~ 147 (430)
+...|++++|...|.+..+. |-+++ ..+++.+..+|.+.|++++|...|++... .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445555555555444332 11111 23455555555555555555555544321 01 2355666666
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH-----hHHHHHH
Q 043370 148 YGFH-GKGEEAINLFEQMEQKEFE-AN----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL-----EHYTCVV 216 (430)
Q Consensus 148 ~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li 216 (430)
|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|++..+...-.+.. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 7777777777666542100 01 2345666666777777777777777666431111111 1455566
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHhcCCC
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKANAI------IWKTLLSACK--THKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p 272 (430)
.++...|++++|...|++. .+.|+.. .+..++.++. ..++++.|...++++..++|
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 6666777777777777665 3333311 2333444443 34456666666666666665
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=1.9e-09 Score=101.01 Aligned_cols=228 Identities=9% Similarity=0.064 Sum_probs=177.4
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CC-cHhHH
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVG-FRPD----KITFVSVISSCSELATLGQGQQIHAEVVKAGA-----SL-DVGVI 110 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~~-~~~~~ 110 (430)
.....+...|++++|+..|++..+.. -.+| ..++..+...+...|+++.|...+.+..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34555788999999999999987642 1133 45677888899999999999999998876311 11 24578
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECEY-----S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-----KEFEANDVTF 176 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 176 (430)
+.+...|...|++++|...|++... + ...+++.+...|...|++++|++.|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 8899999999999999999987542 1 235788899999999999999999999876 32 3336778
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCC---ccCHhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHH
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRR---KPRLEHYTCVVDLLGRCGY---LDEAAALIRNMPVKAN-AIIWKTLLS 249 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~ 249 (430)
..+...+.+.|+.++|...+++..+...- +.....+..+...|...|+ +.+|...+++.+..|+ ...+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88899999999999999999998764222 2223456777778888888 9999999999765554 345667777
Q ss_pred HHHhcCChhHHHHHHHHHhcC
Q 043370 250 ACKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~ 270 (430)
.|...|+.+.|...+++..+.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999988643
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=6.2e-10 Score=98.97 Aligned_cols=149 Identities=7% Similarity=-0.022 Sum_probs=106.2
Q ss_pred HcCChHHHHHHHccCC-------CC----CHHHHHHHHHHHHHCCChhHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 043370 18 KSGSLVEGEKVIRLMP-------IR----NVIAWITLIAGKAQNGLAEDVLDQYNLMRMV------GFRP-DKITFVSVI 79 (430)
Q Consensus 18 ~~g~~~~A~~~f~~m~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll 79 (430)
..|+++.|...|++.. .+ ...+|..+...|...|++++|+..|++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4556666655555432 11 3567788888888888888888888887753 2122 345677788
Q ss_pred HHHhccCChHHHHHHHHHHHHc------C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CCHhHH
Q 043370 80 SSCSELATLGQGQQIHAEVVKA------G-ASLDVGVISSLISMYSRCGCLDDSVKTFLECEY-----------SDVVLW 141 (430)
Q Consensus 80 ~~~~~~g~~~~a~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~d~~~~ 141 (430)
..+...|++++|...+.++++. . .+....++..+...|...|++++|...|++... ....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888887664 1 122456778888888888888888888876532 134567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 142 SSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
..+...|...|++++|+..|++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888888888888765
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=4.9e-09 Score=94.48 Aligned_cols=205 Identities=7% Similarity=-0.018 Sum_probs=152.5
Q ss_pred hHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 043370 22 LVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRPD-KITFVSVISSCSELATLGQGQQIHA 96 (430)
Q Consensus 22 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 96 (430)
+++|...|++ ....|...|++++|+..|.+..+. |-+++ ..+|+.+..++...|++++|...++
T Consensus 33 ~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666665544 466788999999999999988653 32222 4678899999999999999999999
Q ss_pred HHHHcCCCC-c----HhHHHHHHHHHHhc-CCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHH
Q 043370 97 EVVKAGASL-D----VGVISSLISMYSRC-GCLDDSVKTFLECEY-----SD----VVLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 97 ~~~~~g~~~-~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
+.++..... + ..+++.+...|... |++++|...|++... .+ ..+|+.+...|.+.|++++|+..|
T Consensus 102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 181 (292)
T 1qqe_A 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 887642110 1 45788999999996 999999999987542 11 356888999999999999999999
Q ss_pred HHHHHCCCCCCH------HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH------hHHHHHHHHHh--hcCCHHH
Q 043370 162 EQMEQKEFEAND------VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL------EHYTCVVDLLG--RCGYLDE 227 (430)
Q Consensus 162 ~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~--~~g~~~~ 227 (430)
++..+....... .++..+..++...|++++|...|++..+ +.|+. ..+..++..|. ..+++++
T Consensus 182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999886422221 1567788889999999999999999874 34432 13445566664 5678999
Q ss_pred HHHHHHhC-CCCCC
Q 043370 228 AAALIRNM-PVKAN 240 (430)
Q Consensus 228 A~~~~~~m-~~~p~ 240 (430)
|...|+++ ...|+
T Consensus 259 A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 259 HCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHTTSSCCCHH
T ss_pred HHHHhccCCccHHH
Confidence 99999887 54553
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=7.2e-09 Score=91.57 Aligned_cols=205 Identities=12% Similarity=0.016 Sum_probs=135.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEY--S-D---VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEF-EAN-DVTFV 177 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 177 (430)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 556666777777777888888887777642 2 3 55677777777777888888888877776421 112 34455
Q ss_pred HHHHHhhh--------cCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 043370 178 SLLYACSH--------CGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLL 248 (430)
Q Consensus 178 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 248 (430)
.+..++.. .|++++|...|+++.+.+ |+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 56666666 777777777777776542 32 12222211111100000 11245566
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHhc----------cchhHHHHHHHHHHhCCCCCCCceeEE
Q 043370 249 SACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLLSNIHASA----------KRWQGVSEFREAMRERNVKKEPGVSWL 315 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (430)
..+...|+++.|...++++++..|.+ +.++..+..+|... |++++|...+++..+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---------- 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----------
Confidence 77999999999999999999998864 34788888999876 89999999999987543
Q ss_pred EECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHc
Q 043370 316 EIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLR 351 (430)
Q Consensus 316 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~ 351 (430)
..+|...++...+..+..++.+.
T Consensus 226 -------------p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 -------------PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHHh
Confidence 23555666777777777666553
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=3.4e-09 Score=93.66 Aligned_cols=202 Identities=10% Similarity=-0.003 Sum_probs=144.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHhccCC--C----CHh
Q 043370 69 RPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD---VGVISSLISMYSRCGCLDDSVKTFLECEY--S----DVV 139 (430)
Q Consensus 69 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----d~~ 139 (430)
+.+...+......+.+.|++++|...|+.+++..+. + ..++..+..+|.+.|++++|...|+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345677788888889999999999999999987533 3 67888999999999999999999998652 2 245
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHh
Q 043370 140 LWSSMIAAYGF--------HGKGEEAINLFEQMEQKEFEAND-VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLE 210 (430)
Q Consensus 140 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 210 (430)
.+..+..++.. .|++++|+..|++..+. .|+. ..... ...+..+... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 67788888888 99999999999999886 3443 22211 1111111111 112
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhcCCCCCC
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTH----------KSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 275 (430)
.+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3556778888889999999888876 22232 44666677777755 888999999999999999765
Q ss_pred h---hHHHHHHHHHhccchh
Q 043370 276 A---PYVLLSNIHASAKRWQ 292 (430)
Q Consensus 276 ~---~~~~l~~~~~~~g~~~ 292 (430)
. +...+...+...++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 4 3344444444444443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=7.9e-09 Score=92.20 Aligned_cols=239 Identities=9% Similarity=0.031 Sum_probs=162.1
Q ss_pred HHcCChHHHHHHHccCCCCC-HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043370 17 MKSGSLVEGEKVIRLMPIRN-VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIH 95 (430)
Q Consensus 17 ~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 95 (430)
.=.|++..++.-...+...+ ...---+.++|...|++.... .-.|....+..+..-+ ..+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 34678888877666554322 233334568888888877421 1234443444443333 322 56777
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043370 96 AEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY-----SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE 170 (430)
Q Consensus 96 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 170 (430)
++.++.+ +++..+...+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 7776655 44555666888999999999999999987632 35677788889999999999999999999875 5
Q ss_pred C-----CHHHHHHHHHHh--hhcC--cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC---
Q 043370 171 A-----NDVTFVSLLYAC--SHCG--LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV--- 237 (430)
Q Consensus 171 p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 237 (430)
| +..+...+..++ ...| +..+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6 366666676663 3334 899999999998754 355333344444788999999999998765 21
Q ss_pred -------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 238 -------KA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 238 -------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
.| |+.+...+|......|+ .|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 45566566666666676 7889999999999976644
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.6e-08 Score=90.28 Aligned_cols=239 Identities=7% Similarity=-0.043 Sum_probs=166.7
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLD 124 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 124 (430)
+-..-.|++..++.-..++.. ......-.-+.+++...|+++.+ ....|.......+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 334457888888874333221 11223344456777777776532 123344434444333 33333
Q ss_pred HHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 125 DSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEA-NDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 125 ~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777654 3556667788899999999999999999987765322 45667788899999999999999999997
Q ss_pred hhcCCcc-----CHhHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 043370 201 KKYRRKP-----RLEHYTCVVDL--LGRCG--YLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGV 270 (430)
Q Consensus 201 ~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 270 (430)
+. .| +..+...|..+ ....| ++.+|..+|+++ ...|+..+-..++.++...|++++|...++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 55 34555566655 33334 999999999999 33465344445555899999999999999988765
Q ss_pred ----------CCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 271 ----------NPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 271 ----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+|.++.+...++......|+ +|.+++.++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888999888888888887 8899999987654
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=6.1e-09 Score=81.03 Aligned_cols=126 Identities=13% Similarity=0.204 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+. .+..++..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 45666666777777777777777766543 33555666666666666777777777766666532 24555555666666
Q ss_pred hcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 119 RCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
+.|++++|.+.|+++. +.+...|..+...+.+.|++++|...|+++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666665543 23445555566666666666666666666554
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=5.7e-09 Score=81.23 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLL 219 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 219 (430)
.|..+...+...|++++|+.+|+++.+.+ +.+..++..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45555666666666666666666665542 234455555555666666666666666665542 122334444455555
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 220 GRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.+.|++++|.+.++++ ...| +...|..+...+...|+++.|...++++.+.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555444 1111 344444444455555555555555555544444
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=1.5e-08 Score=86.37 Aligned_cols=25 Identities=4% Similarity=0.138 Sum_probs=15.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHC
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMV 66 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~ 66 (430)
.....+.+.|++++|+..|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444556666666666666666654
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=7.6e-09 Score=92.95 Aligned_cols=175 Identities=8% Similarity=-0.082 Sum_probs=134.2
Q ss_pred HHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 123 LDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 123 ~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
.+.....+....+.+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 4444555555555566777778888888999999999999988763 335667888888899999999999999988653
Q ss_pred cCCccCHhHHHH-HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC--Chh
Q 043370 203 YRRKPRLEHYTC-VVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD--AAP 277 (430)
Q Consensus 203 ~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 277 (430)
.|+...... ....+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 233356677777788877776 3344 57788888888999999999999999999999876 788
Q ss_pred HHHHHHHHHhccchhHHHHHHHHH
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+..|+.+|...|+.++|...+++-
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999999999988877654
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=3.2e-08 Score=85.38 Aligned_cols=181 Identities=9% Similarity=0.001 Sum_probs=119.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEY--SD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND----VT 175 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 175 (430)
+...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 345566677788888888888888887652 22 3567778888888888888888888887753 332 13
Q ss_pred HHHHHHHhhh------------------cCcHHHHHHHHHHHhhhcCCccC-HhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043370 176 FVSLLYACSH------------------CGLKEKGMEFFDLMVKKYRRKPR-LEHYTCVVDLLGRCGYLDEAAALIRNMP 236 (430)
Q Consensus 176 ~~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (430)
+..+..++.. .|+.++|...|+++.+. .|+ ...+.++.... .+....
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-------
Confidence 3344444433 35666666666666543 222 11211111100 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 237 VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA---APYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 237 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
......+...+...|+++.|...++++++..|+++ .++..+..+|.+.|++++|.+.++.+...+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345568889999999999999999998665 5688999999999999999999999887654
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=1.5e-08 Score=102.46 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=91.2
Q ss_pred HHCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 48 AQNGLAEDVLDQYNLMR--------MVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++++++.... +...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45666666666666665 221 234455555666666666666666666666654322 45556666666666
Q ss_pred cCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHH
Q 043370 120 CGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFF 196 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 196 (430)
.|++++|.+.|++.. ..+...|..+..+|.+.|++++ ++.|++..+.+ +-+...+..+..++...|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666665533 2345555556666666666666 66666655542 223445555555555666666666655
Q ss_pred HHHhhhcCCccC-HhHHHHHHHHHhh
Q 043370 197 DLMVKKYRRKPR-LEHYTCVVDLLGR 221 (430)
Q Consensus 197 ~~~~~~~~~~p~-~~~~~~li~~~~~ 221 (430)
+++.+ +.|+ ...+..+..+|..
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHc
Confidence 55542 2333 3444444444433
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=5.8e-10 Score=89.81 Aligned_cols=140 Identities=9% Similarity=-0.007 Sum_probs=90.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH
Q 043370 147 AYGFHGKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 225 (430)
.+...|+.++|+..+++.... .|+ ...+..+...|.+.|++++|...|++..+. .+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334455666666666655442 222 234445566666666666666666666543 122456666677777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHhcCCCCCChhHHHHHHHHHhccc
Q 043370 226 DEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGR-IAEEILGVNPQDAAPYVLLSNIHASAKR 290 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 290 (430)
++|...|++. ...| +...|..+...+...|+.++|.+ .++++.+++|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3445 46677777778888888766555 4588888888888888888777777664
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=1.3e-08 Score=92.32 Aligned_cols=217 Identities=10% Similarity=-0.008 Sum_probs=143.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 043370 50 NGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSE-LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVK 128 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 128 (430)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456777777777665531 111 111 35666666666553 345667777777777
Q ss_pred HHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhhhcCcHHHHH
Q 043370 129 TFLECEY-----SD----VVLWSSMIAAYGFHGKGEEAINLFEQMEQK----EFEAN--DVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 129 ~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~ 193 (430)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+. | .|. ..++..+...|.. |++++|.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 7765431 11 356777888888889999999888876542 2 122 3567778888888 9999999
Q ss_pred HHHHHHhhhcCC---cc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHH
Q 043370 194 EFFDLMVKKYRR---KP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PV---KAN----AIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 194 ~~~~~~~~~~~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~a~ 261 (430)
..|++..+.+.- .+ ...++..+...|.+.|++++|...|++. .. .++ ...+..+...+...|+++.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887753211 11 1467888899999999999999998876 11 111 235666666777889999999
Q ss_pred HHHHHHhcCCCCCChh-----HHHHHHHHHhccchhHHHH
Q 043370 262 RIAEEILGVNPQDAAP-----YVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 296 (430)
..+++.+ +.|....+ ...++.++ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 88854332 33445555 4566655555
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=2.1e-08 Score=101.30 Aligned_cols=190 Identities=11% Similarity=0.005 Sum_probs=149.3
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhc
Q 043370 83 SELATLGQGQQIHAEVV--------KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~ 151 (430)
...|++++|.+.+++.+ +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999998 432 4467889999999999999999999999865 45788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAAL 231 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 231 (430)
|++++|++.|++..+.. +-+...+..+..++...|++++ .+.|++..+. .+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998863 3356788899999999999999 9999998864 233668899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHhcCCCCCChh
Q 043370 232 IRNM-PVKAN-AIIWKTLLSACKTHKS-----TDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 232 ~~~m-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 277 (430)
|++. ...|+ ...|..+..++...++ .+...+..+.+..+.+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 56675 5667777777655554 344444555555555544443
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=4.2e-08 Score=88.05 Aligned_cols=161 Identities=9% Similarity=0.014 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHH-HHHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--SDVVLWSS-MIAA 147 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~-li~~ 147 (430)
+...+..+...+...|++++|...++++++..+. +...+..+...|.+.|++++|...|++... |+...... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3445555666666677777777777777665432 566666677777777777777777776643 33322222 2223
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
+.+.++.++|+..|++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 455566666666666666542 3345566666666667777777777776666541111124456666666666666666
Q ss_pred HHHHHH
Q 043370 228 AAALIR 233 (430)
Q Consensus 228 A~~~~~ 233 (430)
|...++
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=4.6e-08 Score=83.26 Aligned_cols=187 Identities=9% Similarity=0.021 Sum_probs=114.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCCh
Q 043370 75 FVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKG 154 (430)
Q Consensus 75 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~ 154 (430)
+......+...|++++|...|++.++..+. +...+... ..... .......++.+...|.+.|++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCCH
Confidence 334445556778888888888877775321 22222220 00000 000122234477778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCC--HHHHHHH
Q 043370 155 EEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGY--LDEAAAL 231 (430)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~--~~~A~~~ 231 (430)
++|+..|++..+.. +-+...+..+...+...|++++|...|++..+. .| +...+..+...|...|. .+.+...
T Consensus 71 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 71 DKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888888887753 335667777888888888888888888888753 34 56677777777765543 3445566
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 232 IRNMPVKANA--IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 232 ~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
++... .|+. ..|..+..++...|++++|...|++.+++.| +......|.+
T Consensus 147 ~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P-~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDK 198 (208)
T ss_dssp HC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC-CHHHHHHHHH
T ss_pred HHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 66552 2333 3344444556677889999999999998888 4444444443
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=1.4e-06 Score=78.30 Aligned_cols=231 Identities=7% Similarity=0.004 Sum_probs=167.7
Q ss_pred HHHCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hh
Q 043370 47 KAQNGL-AEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA--TLGQGQQIHAEVVKAGASLDVGVISSLISMY----SR 119 (430)
Q Consensus 47 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~ 119 (430)
..+.|. .++|++++++++..+ +-+...|+.--.++...+ +++++.+.++.++...++ +..+|+--...+ .+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 334444 468999999998863 334455787777777888 899999999999887654 666666554444 45
Q ss_pred c---CCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc---
Q 043370 120 C---GCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGE--EAINLFEQMEQKEFEANDVTFVSLLYACSHCGL--- 188 (430)
Q Consensus 120 ~---g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--- 188 (430)
. +++++++++++.+. +++-.+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.-.....+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 5 78889998888765 457788888887888888888 9999999998875 3466677766666666665
Q ss_pred ---HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhH
Q 043370 189 ---KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE-AAALIRNM-PV----KANAIIWKTLLSACKTHKSTDM 259 (430)
Q Consensus 189 ---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~~~~~~ 259 (430)
++++.+.++.++.. .+-+...|+.+-..+.+.|+..+ +..+.++. .. ..+...+..+...+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 78888888888754 23467778878778877777444 55566665 21 2367778888888888888888
Q ss_pred HHHHHHHHhc-CCCCCChhHHHHH
Q 043370 260 AGRIAEEILG-VNPQDAAPYVLLS 282 (430)
Q Consensus 260 a~~~~~~~~~-~~p~~~~~~~~l~ 282 (430)
|.++++.+.+ .+|.....|...+
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHH
Confidence 8888888885 7886666665443
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=2.7e-08 Score=98.41 Aligned_cols=159 Identities=11% Similarity=0.019 Sum_probs=102.5
Q ss_pred CCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 121 GCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 121 g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +.+..++..+...+...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666544 2345667777777777777777777777776652 3345667777777777777777777777
Q ss_pred HHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhcCCC
Q 043370 198 LMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTH---KSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 198 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p 272 (430)
+..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...+++.++.+|
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 77653 1234567777777788888888888777776 3333 466777777778888 888888888888888888
Q ss_pred CCChhHHHHH
Q 043370 273 QDAAPYVLLS 282 (430)
Q Consensus 273 ~~~~~~~~l~ 282 (430)
.+...|..+.
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 7777666554
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=4.1e-08 Score=81.10 Aligned_cols=156 Identities=8% Similarity=0.019 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISS-C 82 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~ 82 (430)
.....+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..+.. |+...+...... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455677888899999999999998763 367888999999999999999999998887653 354433322211 1
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C---CHhHHHHHHHHHHhcCChHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY--S---DVVLWSSMIAAYGFHGKGEEA 157 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---d~~~~~~li~~~~~~g~~~~A 157 (430)
...+....+...+++.++..+. +...+..+...|...|++++|...|+++.. | +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222233467777777776433 677777888888888888888888877542 2 245777778888888888888
Q ss_pred HHHHHHHH
Q 043370 158 INLFEQME 165 (430)
Q Consensus 158 ~~~~~~m~ 165 (430)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=1.9e-08 Score=83.10 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 186 (430)
...+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.... .|+.... .+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHH---
Confidence 3445555666666666666666544 234555666666666666666666666655443 2222211 111000
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIA 264 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 264 (430)
. +...+...+|...+++. ...| +...+..+...+...|++++|...+
T Consensus 83 ------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 ------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 00111111234444433 2234 4666777777778888888888888
Q ss_pred HHHhcCCCCC--ChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 265 EEILGVNPQD--AAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 265 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+++++.+|.. +..+..+..+|...|+.++|...+++.
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 8888777743 457778888888888888887777654
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=1.7e-07 Score=79.89 Aligned_cols=160 Identities=8% Similarity=-0.055 Sum_probs=88.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC----cHHHHHHHHHHHhhhcCCccCHhHH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG----LKEKGMEFFDLMVKKYRRKPRLEHY 212 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 212 (430)
++.++..+...|...+++++|++.|++..+.| +...+..|...|.. + +.++|..+|++..+. + +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 44444444445555555555555555555443 33344444444444 3 555555555555432 1 34444
Q ss_pred HHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCChhHHH
Q 043370 213 TCVVDLLGR----CGYLDEAAALIRNM-PVKAN---AIIWKTLLSACKT----HKSTDMAGRIAEEILGVNPQDAAPYVL 280 (430)
Q Consensus 213 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 280 (430)
..|..+|.. .+++++|.++|++. ...|+ +..+..|-..|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 555555554 55666666666655 22222 5555566556655 56677777777777666 345666777
Q ss_pred HHHHHHhc-c-----chhHHHHHHHHHHhCC
Q 043370 281 LSNIHASA-K-----RWQGVSEFREAMRERN 305 (430)
Q Consensus 281 l~~~~~~~-g-----~~~~a~~~~~~m~~~g 305 (430)
|..+|... | ++++|...++...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777543 2 6777777777666555
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=1.7e-08 Score=99.87 Aligned_cols=152 Identities=13% Similarity=0.002 Sum_probs=117.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHH
Q 043370 151 HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAA 230 (430)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 230 (430)
.|++++|++.|++..+.. +-+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999988753 335778889999999999999999999999853 23357889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc---cchhHHHHHHHHHHhCC
Q 043370 231 LIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA---KRWQGVSEFREAMRERN 305 (430)
Q Consensus 231 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~g 305 (430)
.+++. ...| +...|..+...+...|++++|...+++..+.+|.+..++..+..++... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99987 3344 5788999999999999999999999999999999999999999999999 99999999998876543
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=1.6e-07 Score=80.09 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCcHhHH
Q 043370 35 RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA----TLGQGQQIHAEVVKAGASLDVGVI 110 (430)
Q Consensus 35 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~ 110 (430)
.++.++..|...|...+++++|+..|++..+.| +...+..+...+.. + +.++|.+.|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356666667777777777777777777776654 45555566666655 5 6777777777776654 45566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhccCCC-C----HhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043370 111 SSLISMYSR----CGCLDDSVKTFLECEYS-D----VVLWSSMIAAYGF----HGKGEEAINLFEQMEQKEFEANDVTFV 177 (430)
Q Consensus 111 ~~li~~~~~----~g~~~~A~~~~~~~~~~-d----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 177 (430)
..|..+|.. .+++++|...|++..+. + +.++..|...|.. .+++++|+..|++..+. .++...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 666666665 66777777777665433 2 4666666666666 56677777777776654 12333444
Q ss_pred HHHHHhhhc-C-----cHHHHHHHHHHHhhh
Q 043370 178 SLLYACSHC-G-----LKEKGMEFFDLMVKK 202 (430)
Q Consensus 178 ~ll~a~~~~-g-----~~~~a~~~~~~~~~~ 202 (430)
.|...|... | +.++|..+|+...+.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 555554432 2 666777777666554
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=7.4e-07 Score=80.10 Aligned_cols=214 Identities=12% Similarity=0.123 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHhccC---CCCHhHHHHHHHHH----Hhc---CC
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG--CLDDSVKTFLECE---YSDVVLWSSMIAAY----GFH---GK 153 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~d~~~~~~li~~~----~~~---g~ 153 (430)
...++|.++.+.++..++. +..+|+.--......| +++++++.++.+. +.+..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3457899999999998654 7788888888888888 9999999999865 45667787655555 555 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH--HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC------H
Q 043370 154 GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE--KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY------L 225 (430)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~ 225 (430)
+++++++++++.+.. +-|..+|..-.-.+.+.|.++ ++.+.++++.+. -+-+...|+....++.+.|. +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999874 457778887777777888887 999999999875 23366777777777777776 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH-HHHHHHHHhcCC---CCCChhHHHHHHHHHhccchhHHHHHHH
Q 043370 226 DEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDM-AGRIAEEILGVN---PQDAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+++++.++++ ...| |...|+-+-..+.+.|+... ...+.+++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8999988876 4445 78899988888888887544 556777777665 7788999999999999999999999999
Q ss_pred HHHh
Q 043370 300 AMRE 303 (430)
Q Consensus 300 ~m~~ 303 (430)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=2e-07 Score=79.19 Aligned_cols=145 Identities=7% Similarity=0.008 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 189 (430)
+..+...+...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677777888888888877777777777777778888888888888887777653 34556677777777777777
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEIL 268 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 268 (430)
++|...|+...+...-.+... +...| +...| +...|..+...+...|+++.|...++++.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777765311111000 00000 01223 24566777777888888888888888888
Q ss_pred cCCCCC
Q 043370 269 GVNPQD 274 (430)
Q Consensus 269 ~~~p~~ 274 (430)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888854
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=8.2e-09 Score=82.96 Aligned_cols=122 Identities=12% Similarity=0.015 Sum_probs=101.7
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhhhcCCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043370 179 LLYACSHCGLKEKGMEFFDLMVKKYRRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHK 255 (430)
Q Consensus 179 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 255 (430)
|...+...|++++|...+..... ..| +...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566778899999999998864 344 3456778999999999999999999987 5555 6888999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHH-HHHHHh
Q 043370 256 STDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEF-REAMRE 303 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 303 (430)
+++.|...+++.++++|.++.++..+..+|...|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887665 465543
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.83 E-value=4.8e-07 Score=90.40 Aligned_cols=242 Identities=10% Similarity=0.041 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHCC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHcCCCCcHhH
Q 043370 38 IAWITLIAGKAQNG-------LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQ-QIHAEVVKAGASLDVGV 109 (430)
Q Consensus 38 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~g~~~~~~~ 109 (430)
..|...+.---.++ ..+.+..+|++.+.. ++-+...|...+..+...|+.+.|. ++++..+.. .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 46666665433332 124456788888875 3557788888888888889999996 999999875 4557778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-------------C------------CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEY-------------S------------DVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
+...+...-+.|+++.|.++|+.+.. | ....|...+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88899999999999999999987652 2 1236888888888899999999999999
Q ss_pred HHC-CCCCCHHHHHHHHHHhhh-cCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--
Q 043370 165 EQK-EFEANDVTFVSLLYACSH-CGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-- 239 (430)
Q Consensus 165 ~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-- 239 (430)
.+. + .+....|......-.+ .++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++. ...|
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 876 2 1123333322222223 356899999999998863 335566778888888999999999999987 3233
Q ss_pred --CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 240 --NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 240 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
....|...+.--..+|+.+.+..+.+++.+..|+++ ....++.-|
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 357899999999999999999999999999999654 333333333
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=2.8e-07 Score=79.37 Aligned_cols=184 Identities=9% Similarity=-0.059 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CH---hHHH
Q 043370 71 DKITFVSVISSCSELATLGQGQQIHAEVVKAGASL--DVGVISSLISMYSRCGCLDDSVKTFLECEY--S-DV---VLWS 142 (430)
Q Consensus 71 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~---~~~~ 142 (430)
+...+..+...+...|++++|...|+.+++..+.. ....+..+..+|.+.|++++|...|++..+ | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566667778889999999999999999864432 246788899999999999999999998652 2 22 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhhcCcHHHHHHHHHHHhhhc
Q 043370 143 SMIAAYGF------------------HGKGEEAINLFEQMEQKEFEANDV-TFVSLLYACSHCGLKEKGMEFFDLMVKKY 203 (430)
Q Consensus 143 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 203 (430)
.+..++.. .|++++|+..|+++.+. .|+.. ...... ....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~--------------~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK--------------RLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH--------------HHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH--------------HHHHHHHH-
Confidence 55555554 57899999999999886 45432 221111 11111100
Q ss_pred CCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 204 RRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 204 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++.+....|.+.
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112235677888999999999999887 33343 25677888889999999999999999988888544
No 114
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.80 E-value=2.9e-06 Score=84.79 Aligned_cols=113 Identities=9% Similarity=-0.041 Sum_probs=65.6
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCC---hhHHHHHHHHHHHCC-CCCCHHHHH
Q 043370 4 LDLVAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGL---AEDVLDQYNLMRMVG-FRPDKITFV 76 (430)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~t~~ 76 (430)
-|..+|..++..+.+.+.++.|..+|+++. ......|..-+..-.+.++ ++.+..+|++.+... .+|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 356677888888877788888888887765 2355667777776666777 777777777776542 136666665
Q ss_pred HHHHHHhccCCh--------HHHHHHHHHHHH-cCC-CC-cHhHHHHHHHH
Q 043370 77 SVISSCSELATL--------GQGQQIHAEVVK-AGA-SL-DVGVISSLISM 116 (430)
Q Consensus 77 ~ll~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~li~~ 116 (430)
.-+.-..+.++. +...++|+..+. .|. .+ +..+|...+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 555443333322 223355555443 344 33 23455554443
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=2.6e-08 Score=90.33 Aligned_cols=197 Identities=9% Similarity=-0.004 Sum_probs=148.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 163 (430)
..|++++|.+++++..+.... . .+...+++++|...|+. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788999999888764221 1 12115788998888765 35678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc---CCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043370 164 MEQK----EFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY---RRKP-RLEHYTCVVDLLGRCGYLDEAAALIRN 234 (430)
Q Consensus 164 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (430)
..+. |-.+. ..+|..+...|...|++++|...|++..+.+ |... ...++..+...|.+ |++++|...|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 3578888899999999999999999876532 1111 24678889999988 999999999987
Q ss_pred C-CCC-----C--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC------hhHHHHHHHHHhccchhHHHHHHHH
Q 043370 235 M-PVK-----A--NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA------APYVLLSNIHASAKRWQGVSEFREA 300 (430)
Q Consensus 235 m-~~~-----p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 300 (430)
. .+. + ...++..+...+...|++++|...+++.+++.|.+. .++..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 1 145788888889999999999999999987655332 3667777888889999999999998
Q ss_pred HH
Q 043370 301 MR 302 (430)
Q Consensus 301 m~ 302 (430)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=3e-07 Score=78.11 Aligned_cols=143 Identities=3% Similarity=-0.129 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT 87 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 87 (430)
.+..+...|.+.|++++|...|++...++...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344555666666666666666666666666666666666666666666666666666543 3345556666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 88 LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+++|.+.++.+.+......... |...|. .........|..+..+|...|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~-------~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID-------YKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE-------CGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHH-------HHHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666655422111000 000000 000112356677777777788888888888877764
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=4.2e-07 Score=81.69 Aligned_cols=164 Identities=7% Similarity=-0.074 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcC--CccC--H
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-D----VTFVSLLYACSHCGLKEKGMEFFDLMVKKYR--RKPR--L 209 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 209 (430)
..+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...+.+..+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566677778888888888877766432111 1 1233344556677788888888877764211 1111 3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------C
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-------PVKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------D 274 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~ 274 (430)
..++.+...|...|++++|...+++. +..+ ...++..+...|...|++++|...+++.+++.+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777888888888888888877765 2122 1257777888888999999999999888754321 1
Q ss_pred ChhHHHHHHHHHhccchhHH-HHHHHHHH
Q 043370 275 AAPYVLLSNIHASAKRWQGV-SEFREAMR 302 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 302 (430)
..+|..+..+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788889999999999999 77666543
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=1.2e-06 Score=78.63 Aligned_cols=159 Identities=8% Similarity=-0.052 Sum_probs=109.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHH
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQKE-FEANDV----TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTC 214 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 214 (430)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++++.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888876632 122211 2334556666777888888888887753111222 235778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-------CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC------CChhHH
Q 043370 215 VVDLLGRCGYLDEAAALIRNM-------PVK-AN-AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ------DAAPYV 279 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m-------~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~ 279 (430)
+...|...|++++|...|+++ +.. +. ..+|..+...|...|++++|...+++.+++.+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888777765 111 22 346778888899999999999999988754421 256788
Q ss_pred HHHHHHHhccc-hhHHHHHHHHHH
Q 043370 280 LLSNIHASAKR-WQGVSEFREAMR 302 (430)
Q Consensus 280 ~l~~~~~~~g~-~~~a~~~~~~m~ 302 (430)
.+..+|...|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 689988887764
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=5.2e-08 Score=78.17 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=85.3
Q ss_pred CCcc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH
Q 043370 204 RRKP-RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVL 280 (430)
Q Consensus 204 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 280 (430)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++.+++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 4566777888888889999999988887 4445 67888888888999999999999999999999999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHHhCC
Q 043370 281 LSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 281 l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
+..+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=6.4e-08 Score=86.57 Aligned_cols=186 Identities=7% Similarity=-0.044 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
..+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 334444444444444444444444322 2244445555555555555555555555554431 223344445555555
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCH-hHHHHHHHH---HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRL-EHYTCVVDL---LGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a 260 (430)
..|++++|...|....+. .|+. ..+...+.. ..+...+.. .......++......+ ..+ ..|+.+.|
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 555555555555554432 1110 001111111 111111111 1111222233332222 222 25777888
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhc-cchhHHHHHHHHHHh
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASA-KRWQGVSEFREAMRE 303 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 303 (430)
.+.+++..+++|.+......+...+... +.+++|.++|....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888888886666666666666665 667888888887754
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=6.2e-08 Score=77.54 Aligned_cols=97 Identities=8% Similarity=-0.047 Sum_probs=80.6
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++.++|.++.++..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777788888888888888888876 3344 6778888888888999999999999999999998899999999999
Q ss_pred HhccchhHHHHHHHHHHhC
Q 043370 286 ASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~ 304 (430)
...|++++|...++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999998887653
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=2.7e-06 Score=76.36 Aligned_cols=158 Identities=8% Similarity=0.011 Sum_probs=83.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----HhHHHH
Q 043370 43 LIAGKAQNGLAEDVLDQYNLMRMVG-FRPDKI----TFVSVISSCSELATLGQGQQIHAEVVKAGAS-LD----VGVISS 112 (430)
Q Consensus 43 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~ 112 (430)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+.++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677777777777777776532 122211 2223455555666777777777777663222 12 224666
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 043370 113 LISMYSRCGCLDDSVKTFLECEY------S----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK----EFEAN-DVTFV 177 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~~------~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 177 (430)
+...|...|++++|...|++..+ . ...+|+.+...|.+.|++++|+..+++..+. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666655431 1 1234555555666666666666666554431 11111 34455
Q ss_pred HHHHHhhhcC-cHHHHHHHHHHHh
Q 043370 178 SLLYACSHCG-LKEKGMEFFDLMV 200 (430)
Q Consensus 178 ~ll~a~~~~g-~~~~a~~~~~~~~ 200 (430)
.+..++...| ..++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555555 2455555555443
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=1.8e-07 Score=78.72 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=64.5
Q ss_pred HHcCChHHHHH---HHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCh
Q 043370 17 MKSGSLVEGEK---VIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMV----GFRP-DKITFVSVISSCSELATL 88 (430)
Q Consensus 17 ~~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~ 88 (430)
...|++++|.+ ++..-+.....+++.+...+...|++++|+..+++..+. +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777 554444345567777777777777777777777776541 1111 234455566666666777
Q ss_pred HHHHHHHHHHHHc----CCCC--cHhHHHHHHHHHHhcCCHHHHHHHHhc
Q 043370 89 GQGQQIHAEVVKA----GASL--DVGVISSLISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 89 ~~a~~~~~~~~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 132 (430)
++|...+++..+. +..+ ...++..+...|...|++++|...|++
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7776666665442 1011 123445555555555666555555544
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=1.8e-07 Score=72.51 Aligned_cols=107 Identities=13% Similarity=0.017 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACK 252 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 252 (430)
.+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555666666666666666665542 1224556666666666666666666666655 3333 4666777777777
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 253 THKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
..|++++|...|++.++++|.++.++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 7888888888888888888877766665544
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=2.8e-05 Score=70.70 Aligned_cols=236 Identities=10% Similarity=0.060 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
.++.+-....+.+..++|++++++++..+ +-+...|+.--..+...+ .++++..+++.+++..++ +..+|+--...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444444445556678999999999864 334555777777777777 599999999999987655 788888777777
Q ss_pred Hhc-C-CHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043370 118 SRC-G-CLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGE--------EAINLFEQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 118 ~~~-g-~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
.+. + ++++++++++.+.+ ++-.+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 776 7 88899999988764 46677776666665555565 8899999888874 446777777777777
Q ss_pred hcCc-------HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH--------------------HHHHHHHHhC-C
Q 043370 185 HCGL-------KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL--------------------DEAAALIRNM-P 236 (430)
Q Consensus 185 ~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~ 236 (430)
+.+. ++++.+.+++++.. .+-|...|+-+-..+.+.|+. .+..++..++ +
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred hccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 7665 67888888887753 233566777666666665543 3344444444 1
Q ss_pred C-------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-cCCCCCChhHH
Q 043370 237 V-------KANAIIWKTLLSACKTHKSTDMAGRIAEEIL-GVNPQDAAPYV 279 (430)
Q Consensus 237 ~-------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~ 279 (430)
. .++...+..|...|...|+.++|.++++.+. +.+|.....|.
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 1 1456666677777777777777777777775 55664444443
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1.1e-06 Score=70.97 Aligned_cols=124 Identities=9% Similarity=-0.078 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++... .+..++..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 456666666777777777777777766543 33555666666666666666666666666666532 2455555555555
Q ss_pred HhcCCHHHHHHHHhccC---CCCHhHHHHH--HHHHHhcCChHHHHHHHHH
Q 043370 118 SRCGCLDDSVKTFLECE---YSDVVLWSSM--IAAYGFHGKGEEAINLFEQ 163 (430)
Q Consensus 118 ~~~g~~~~A~~~~~~~~---~~d~~~~~~l--i~~~~~~g~~~~A~~~~~~ 163 (430)
.+.|++++|...|++.. +.+...+..+ ...+...|++++|+..+.+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555555555555432 1233333222 2224444555555555544
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=1.4e-06 Score=76.71 Aligned_cols=182 Identities=9% Similarity=-0.012 Sum_probs=89.7
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHhccCChHHHHHHHHHHHHcCCCCc---------------
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSV-------ISSCSELATLGQGQQIHAEVVKAGASLD--------------- 106 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------l~~~~~~g~~~~a~~~~~~~~~~g~~~~--------------- 106 (430)
+.++..+|.+.|.+..+.. +-....|+.+ ...+.+.+...++...++..++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4667777777777776653 3345556555 2333333333333222222222 2221
Q ss_pred -------HhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHH
Q 043370 107 -------VGVISSLISMYSRCGCLDDSVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN--DVT 175 (430)
Q Consensus 107 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t 175 (430)
..+.-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 22334455566666666666666666542 322244444555666666666666665433321 111 124
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC--HhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR--LEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+..+..++...|++++|...|++.... ...|. .........++.+.|+.++|...|+++
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555666666666666666665432 11132 223344444455555555555555554
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=2.1e-07 Score=74.59 Aligned_cols=92 Identities=9% Similarity=-0.036 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMY 117 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 117 (430)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|+++++..+. +...+..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 344445555555555555555555555432 223444444555555555555555555555444322 333344444444
Q ss_pred HhcCCHHHHHHHHh
Q 043370 118 SRCGCLDDSVKTFL 131 (430)
Q Consensus 118 ~~~g~~~~A~~~~~ 131 (430)
.+.|++++|...|+
T Consensus 115 ~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 115 LRLKAPLKAKECFE 128 (151)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44444444444443
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=6.2e-07 Score=72.54 Aligned_cols=125 Identities=12% Similarity=0.005 Sum_probs=81.6
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT 253 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 253 (430)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|...+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555555555555555555442 1224455556666666666666666666554 2223 45677777777888
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHH--HHHHhccchhHHHHHHHHHH
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLS--NIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~ 302 (430)
.|++++|...++++.+..|.+...+..+. ..+...|++++|...+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888887777764444 44778889999888887654
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=5e-07 Score=68.93 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVK-ANAIIWKTLLSAC 251 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 251 (430)
.++..+...+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|...++++ ... .+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 33444444555555555555555555432 1223445555555555666666666655554 112 2455666677777
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 252 KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
...|+++.|...++++.+..|.++..+..+..++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 7777788888888877777777777776666665543
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=2.9e-06 Score=76.12 Aligned_cols=161 Identities=10% Similarity=-0.016 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----Hh
Q 043370 74 TFVSVISSCSELATLGQGQQIHAEVVKAGASLD-----VGVISSLISMYSRCGCLDDSVKTFLECEY-----SD----VV 139 (430)
Q Consensus 74 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~ 139 (430)
.+...+..+...|++++|.+.+....+...... ...+..+...|...|++++|...|++... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334444445555555555555555544322111 11233345555556666666665554321 11 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc---CCcc-CH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQK-EFEAN-----DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY---RRKP-RL 209 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~ 209 (430)
+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...|...|++++|..++++..+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666666666666666666666665421 00111 1356666666667777777776666654321 1111 14
Q ss_pred hHHHHHHHHHhhcCCHHHH-HHHHHh
Q 043370 210 EHYTCVVDLLGRCGYLDEA-AALIRN 234 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A-~~~~~~ 234 (430)
.+|..+...|.+.|++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5566667777777777666 554443
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=2.8e-07 Score=71.43 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=89.3
Q ss_pred CccC-HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 205 RKPR-LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 205 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..+++.++++|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 467778899999999999999999987 4445 688899999999999999999999999999999999999999
Q ss_pred HHHHHhccchhHHHHHHHHHHhC
Q 043370 282 SNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 282 ~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
..+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=3.9e-07 Score=72.14 Aligned_cols=97 Identities=11% Similarity=-0.022 Sum_probs=79.0
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++.++|.++..+..+..+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777788888888888888876 3344 6777888888888899999999999999988998888999999999
Q ss_pred HhccchhHHHHHHHHHHhC
Q 043370 286 ASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~ 304 (430)
...|++++|...++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999988887653
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.60 E-value=2.6e-07 Score=84.91 Aligned_cols=94 Identities=12% Similarity=0.013 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++++++|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467788888888999999999888877 3344 67888889999999999999999999999999999999999999999
Q ss_pred hccchhHH-HHHHHHHH
Q 043370 287 SAKRWQGV-SEFREAMR 302 (430)
Q Consensus 287 ~~g~~~~a-~~~~~~m~ 302 (430)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44666663
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=4.4e-07 Score=69.90 Aligned_cols=116 Identities=8% Similarity=-0.018 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSAC 251 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 251 (430)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34444555555555555555555555442 1224455555666666666666666666554 2223 455666777777
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccch
Q 043370 252 KTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRW 291 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 291 (430)
...|+++.|...+++..+..|.++..+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 7888888888888888877887777777777777776654
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=1.4e-06 Score=66.34 Aligned_cols=95 Identities=9% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555555555555555555555432 2344455555555555555555555555555543 2244555555555
Q ss_pred HHhcCCHHHHHHHHhcc
Q 043370 117 YSRCGCLDDSVKTFLEC 133 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~ 133 (430)
|.+.|++++|...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55555555555555543
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=6.8e-07 Score=69.22 Aligned_cols=112 Identities=9% Similarity=-0.008 Sum_probs=59.9
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT 253 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 253 (430)
+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...+++. ...| +...|..+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 333444444444444444444444321 1113344444444444455555555444443 1122 45566666666777
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAK 289 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 289 (430)
.|++++|...+++..+.+|.+...+..+..++...|
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777777766677777766666554
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=1.9e-07 Score=83.46 Aligned_cols=189 Identities=6% Similarity=-0.050 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++++++... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34566667777777777777777777777653 33566677777777777777777777777776542 35667777777
Q ss_pred HHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYS---DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
+|.+.|++++|...|+..... +...+...+....+. .++. -+........+++......+ ..+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 777778888777777664321 110111111111111 1111 11222223233444333333 222 25788888
Q ss_pred HHHHHHHhhhcCCccC-HhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 043370 193 MEFFDLMVKKYRRKPR-LEHYTCVVDLLGRC-GYLDEAAALIRNM 235 (430)
Q Consensus 193 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m 235 (430)
.+.++...+ ..|+ ......+...+.+. +.+++|.++|...
T Consensus 155 ~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 155 LEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888877763 3454 33444455555555 6688888888877
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1.5e-06 Score=76.47 Aligned_cols=192 Identities=9% Similarity=-0.036 Sum_probs=136.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHH-------HHHHHhcCCHHHHHHHHhccCC--C-------C----------
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSL-------ISMYSRCGCLDDSVKTFLECEY--S-------D---------- 137 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~--~-------d---------- 137 (430)
..++...|.+.|.++.+..+. ....|+.+ ...+.+.++..++...+..-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578999999999999987644 66777766 4555555555555555543221 1 1
Q ss_pred -----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC--Hh
Q 043370 138 -----VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR--LE 210 (430)
Q Consensus 138 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 210 (430)
...+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 123445667788899999999999988765 355545556666888999999999999866432 1 221 24
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM---PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLL 281 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 281 (430)
.+..+..++.+.|++++|+..|++. +..|. ...+.....++...|+.++|...|+++...+|. +..+..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 6777888999999999999999987 22143 335566666789999999999999999999995 4444433
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=8.3e-07 Score=74.52 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=33.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCHhHHHHHHHHHHhcCCh
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEY---------SDVVLWSSMIAAYGFHGKG 154 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~d~~~~~~li~~~~~~g~~ 154 (430)
..|++++|.++++.+.. .......++..+...|...|++++|...|++... ....+++.+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 1122344445555555555555555555444221 0123344444444444555
Q ss_pred HHHHHHHHHH
Q 043370 155 EEAINLFEQM 164 (430)
Q Consensus 155 ~~A~~~~~~m 164 (430)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=2.7e-06 Score=65.76 Aligned_cols=114 Identities=6% Similarity=-0.075 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+... .+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 45677777777777888888888887777653 33566677777777777777777777777776542 25566666666
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhc
Q 043370 116 MYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFH 151 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~ 151 (430)
+|.+.|++++|.+.|++.. +.+...+..+...+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 6666666666666666543 22334444444444433
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=2.7e-06 Score=65.37 Aligned_cols=115 Identities=10% Similarity=-0.058 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+....+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3455555666666666666666666665542 33455555555666666666666666666555432 234455555555
Q ss_pred HHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC
Q 043370 117 YSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGK 153 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~ 153 (430)
|.+.|++++|...|++.. +.+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555554432 2234444444444444443
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=6.7e-07 Score=73.58 Aligned_cols=127 Identities=9% Similarity=0.063 Sum_probs=93.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH-HhhcCCH--
Q 043370 149 GFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL-LGRCGYL-- 225 (430)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 225 (430)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888877753 445677888888888888888888888888754 12356677777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 226 DEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
++|...+++. ...| +...|..+...+...|+++.|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888876 3334 467777888888999999999999999999988665433
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=1.2e-07 Score=79.84 Aligned_cols=174 Identities=8% Similarity=-0.106 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 111 SSLISMYSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 111 ~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
+..+......|++++|.+.++.-.. .....|..+...+...|++++|+..|++..+.. |+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------
Confidence 3445555566777777766664332 144567777777888888888888888877642 221100000
Q ss_pred cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 043370 188 LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAE 265 (430)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 265 (430)
..+. -.. ......+..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...++
T Consensus 78 ~~~~-------~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLD-------KKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHH-------HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHH-------HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0000 000 001356667777788888888888888776 3333 57778888888999999999999999
Q ss_pred HHhcCCCCCChhHHHHHHHHHhccchhHHH-HHHHHHHhCC
Q 043370 266 EILGVNPQDAAPYVLLSNIHASAKRWQGVS-EFREAMRERN 305 (430)
Q Consensus 266 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 305 (430)
+.++++|.+..++..+..++...++.+++. ..++.|...+
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999989999999999999888888877 5566665444
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=1.8e-05 Score=71.89 Aligned_cols=216 Identities=11% Similarity=0.086 Sum_probs=159.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHhccC---CCCHhHHHHHHHHHHhc-C-ChHHH
Q 043370 84 ELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG-CLDDSVKTFLECE---YSDVVLWSSMIAAYGFH-G-KGEEA 157 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~-g-~~~~A 157 (430)
+....++|.++.+.++..+.. +..+|+.--..+...| .++++++.++.+. .++..+|+.-...+.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 334557899999999998655 7788888888888888 5999999999875 45778898877777776 7 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH--------HHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC-----
Q 043370 158 INLFEQMEQKEFEANDVTFVSLLYACSHCGLKE--------KGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY----- 224 (430)
Q Consensus 158 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 224 (430)
+++++++.+.. +-|...|+.-.-...+.|..+ ++++.++++.+. .+-+...|+....++.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccch
Confidence 99999999864 446677776555555555555 899999999875 23477788888888888776
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhcCC------CCC
Q 043370 225 --LDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKST--------------------DMAGRIAEEILGVN------PQD 274 (430)
Q Consensus 225 --~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~ 274 (430)
++++++.++++ ...| |...|+-+-..+.+.|+. ........++.... +..
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888776 4445 788898877777776654 12222222222221 346
Q ss_pred ChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 275 AAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+.+...|+..|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999864
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=3.7e-05 Score=69.51 Aligned_cols=241 Identities=12% Similarity=0.053 Sum_probs=154.0
Q ss_pred HHHHHHHHHH---HHHCCChh-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC----------hHHHHHHHHHHHHc
Q 043370 37 VIAWITLIAG---KAQNGLAE-DVLDQYNLMRMVGFRPDK-ITFVSVISSCSELAT----------LGQGQQIHAEVVKA 101 (430)
Q Consensus 37 ~~~~~~li~~---~~~~g~~~-~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~ 101 (430)
+..|..+... ..+.|.++ +|++++..++.. .|+. ..|+.--..+...+. ++++..+++.++..
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 4455544433 34566665 789999999875 4544 345543333332222 57788888888877
Q ss_pred CCCCcHhHHHHHHHHHHhcC--CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHH
Q 043370 102 GASLDVGVISSLISMYSRCG--CLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGK-GEEAINLFEQMEQKEFEANDVT 175 (430)
Q Consensus 102 g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t 175 (430)
.++ +..+|+--...+.+.| .+++++.+++.+. .+|-.+|+.-...+...|. ++++++.+.++.+.. +-|...
T Consensus 104 ~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 104 NPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp CTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred CCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 544 7788887777777777 4888888888765 4577788877777777787 588999998888864 446666
Q ss_pred HHHHHHHhhhc--------------CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc-----------CCHHHHHH
Q 043370 176 FVSLLYACSHC--------------GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC-----------GYLDEAAA 230 (430)
Q Consensus 176 ~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~ 230 (430)
|+.....+.+. +.++++.+.+...... .+-|...|+-+-..+.+. +.++++.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 66555544443 4577788888887753 233566666555555544 45677777
Q ss_pred HHHhC-CCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 231 LIRNM-PVKANAIIWKTLLSA-----CKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 231 ~~~~m-~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
.++++ ...||. .|..+-.+ ....+..++....+.++.+++|....-|.-|...
T Consensus 260 ~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 260 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 77776 445543 34322221 1235666777788888888888655555544433
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=9.5e-07 Score=72.65 Aligned_cols=118 Identities=7% Similarity=0.012 Sum_probs=78.5
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH-HHhcCCH--H
Q 043370 48 AQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM-YSRCGCL--D 124 (430)
Q Consensus 48 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~ 124 (430)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776653 44566777777777777777777777777776543 256666667766 6677776 7
Q ss_pred HHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 125 DSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 125 ~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
+|...|+... +.+...|..+...|...|++++|+..|++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777776643 335666777777777777777777777777764
No 148
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.48 E-value=0.00013 Score=70.33 Aligned_cols=284 Identities=8% Similarity=-0.067 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC--CCCHHHHHHHHHHHHHCCC-hhHHHHHHHHHHHC-CCC-CCHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP--IRNVIAWITLIAGKAQNGL-AEDVLDQYNLMRMV-GFR-PDKITFVSVISS 81 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-p~~~t~~~ll~~ 81 (430)
.+|...+..+-. |+++.|..+|++.. .|++..|...+.-..+.+. .+....+|+..+.. |.. ++...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 356666666655 78999999998765 4788888888877666653 35566777777653 433 355667776665
Q ss_pred Hh----ccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH------------------------------------------
Q 043370 82 CS----ELATLGQGQQIHAEVVKAGASLDVGVISSLIS------------------------------------------ 115 (430)
Q Consensus 82 ~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~------------------------------------------ 115 (430)
+. ..++.+.+..+|+++++.....-..+|.....
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 43 23567788888888887422111112211111
Q ss_pred ------HHHhc--CC-----HHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 116 ------MYSRC--GC-----LDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 116 ------~~~~~--g~-----~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
.-... |- .+.+..+|+++. ..+...|...+.-+.+.|+.++|.++|++.... |....+..
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~- 250 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL- 250 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH-
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH-
Confidence 10000 00 122333444332 223455555555666666677777777766665 33221111
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhhc---C--------CccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHH
Q 043370 180 LYACSHCGLKEKGMEFFDLMVKKY---R--------RKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKA--NAIIWKT 246 (430)
Q Consensus 180 l~a~~~~g~~~~a~~~~~~~~~~~---~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ 246 (430)
+|......++. ++.+.+.+ . .......|...++.+.+.+.++.|..+|++. ..| +...|..
T Consensus 251 --~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~ 324 (493)
T 2uy1_A 251 --YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIY 324 (493)
T ss_dssp --HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHH
T ss_pred --HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHH
Confidence 11111001111 11221110 0 0001234555566666678899999999887 223 3344433
Q ss_pred HHHH-HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 247 LLSA-CKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 247 ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.... +...++.+.|..+|+...+..|.++..+...++...+.|+.+.|..+++..
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 222346899999999998877866766677777778889999999888875
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=8.9e-07 Score=68.29 Aligned_cols=94 Identities=14% Similarity=0.014 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHAS 287 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 287 (430)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++.++++|.++.+|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555556666666666666666655 2233 456666666677777777777777777777777777777777777777
Q ss_pred ccchhHHHHHHHHHHh
Q 043370 288 AKRWQGVSEFREAMRE 303 (430)
Q Consensus 288 ~g~~~~a~~~~~~m~~ 303 (430)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 7777777777776654
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=5.4e-07 Score=75.75 Aligned_cols=149 Identities=5% Similarity=-0.072 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------------
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPIR---NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDK------------ 72 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------ 72 (430)
..+..+......|+++.|.+.|+.-... ....|..+...+.+.|++++|+..|++..+.. +.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKK 84 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHH
Confidence 3455566666778888888888754422 45677888888999999999999999998752 1121
Q ss_pred ----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHH
Q 043370 73 ----ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMI 145 (430)
Q Consensus 73 ----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li 145 (430)
..+..+..++...|++++|...++..++.. +.+..++..+..+|...|++++|...|++.. +.+...+..+.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 455555555566666666666666665543 2244555555555555555555555555432 22444444444
Q ss_pred HHHHhcCChHHHH
Q 043370 146 AAYGFHGKGEEAI 158 (430)
Q Consensus 146 ~~~~~~g~~~~A~ 158 (430)
..+...++.+++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=1.7e-06 Score=64.50 Aligned_cols=97 Identities=10% Similarity=0.018 Sum_probs=72.3
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC--CChhHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ--DAAPYVLLSNI 284 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 284 (430)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...+++..+..|. +...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445566677777777777777777765 2223 5666777777788888888888888888888887 77788888888
Q ss_pred HHhc-cchhHHHHHHHHHHhCC
Q 043370 285 HASA-KRWQGVSEFREAMRERN 305 (430)
Q Consensus 285 ~~~~-g~~~~a~~~~~~m~~~g 305 (430)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888776544
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=1.6e-06 Score=69.19 Aligned_cols=91 Identities=13% Similarity=-0.020 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSH 185 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 185 (430)
.+..+...+.+.|++++|...|+... +.+...|..+..+|...|++++|+..|++..... +.+...+..+..++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 33444444444444444444444322 2244444444445555555555555555544432 2233444444445555
Q ss_pred cCcHHHHHHHHHHHh
Q 043370 186 CGLKEKGMEFFDLMV 200 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~ 200 (430)
.|++++|...|+...
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555444
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=4.1e-06 Score=76.80 Aligned_cols=142 Identities=12% Similarity=-0.057 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...|.+.|++++|+..|++.++.. |+... -..+.+.++-. ....++..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-----------~~~~~~~~~~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS-----------FSNEEAQKAQA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC-----------CCSHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hcccc-----------CChHHHHHHHH--------HHHHHHHHHHH
Confidence 34566666777777777777777777776642 22100 00000000000 00234444555
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKG 192 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 192 (430)
+|.+.|++++|...|++.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554432 2344455555555555555555555555555431 22334444555555555555554
Q ss_pred -HHHHHHH
Q 043370 193 -MEFFDLM 199 (430)
Q Consensus 193 -~~~~~~~ 199 (430)
...+..|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344444
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=6e-06 Score=62.05 Aligned_cols=106 Identities=13% Similarity=0.000 Sum_probs=55.1
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKT 253 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 253 (430)
+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444444555555544444432 1123344444555555555555555555444 1222 34556666666666
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
.|+++.|...+++..+.+|.++..+..+..
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 777777777777777666655555544443
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.39 E-value=1.2e-06 Score=67.28 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|+.++|+..+++.++++|.++.++..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555677788889999999888887 4445 6778888888899999999999999999999998889999999999999
Q ss_pred cchhHHHHHHHHHHhC
Q 043370 289 KRWQGVSEFREAMRER 304 (430)
Q Consensus 289 g~~~~a~~~~~~m~~~ 304 (430)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887654
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=1.7e-06 Score=70.17 Aligned_cols=104 Identities=12% Similarity=-0.025 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 043370 173 DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSA 250 (430)
Q Consensus 173 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 250 (430)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445666666666777777777777776643 1224556666666666677777776666665 3333 35566666666
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 251 CKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
+...|++++|...+++.++++|.+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 6666777777777776666666655544
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.9e-06 Score=65.31 Aligned_cols=92 Identities=11% Similarity=-0.067 Sum_probs=43.6
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHK 255 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 255 (430)
.+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3333444444444444444444332 1113344444444444445555544444443 2222 3445555555566666
Q ss_pred ChhHHHHHHHHHhcCC
Q 043370 256 STDMAGRIAEEILGVN 271 (430)
Q Consensus 256 ~~~~a~~~~~~~~~~~ 271 (430)
++++|...+++..+++
T Consensus 87 ~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 87 EYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666666555
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=4.3e-06 Score=65.20 Aligned_cols=96 Identities=10% Similarity=-0.012 Sum_probs=65.0
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|.++..+..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4555666666666666666666666655 2223 4566666666677777777777777777777777777777777777
Q ss_pred HhccchhHHHHHHHHHHh
Q 043370 286 ASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~ 303 (430)
...|++++|...+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777776654
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=2.5e-06 Score=67.44 Aligned_cols=100 Identities=8% Similarity=-0.068 Sum_probs=52.6
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 043370 177 VSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTH 254 (430)
Q Consensus 177 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 254 (430)
..+...+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33444445555555555555555432 1123444555555555555555555555544 2222 344455555666666
Q ss_pred CChhHHHHHHHHHhcCCCCCChhH
Q 043370 255 KSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 255 ~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
|++++|...+++.+++.|.++...
T Consensus 100 g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CCHHHHHHHHHHHHHhCCCCcchH
Confidence 666666666666666666554443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=9.6e-06 Score=63.90 Aligned_cols=75 Identities=12% Similarity=-0.046 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
..+..+...|...|++++|...+++. ...| +...|..+...+...|++++|...+++..+.+|.+...+..+..+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34444444455555555555554443 2222 345555555666666667777777776666666555555444443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=4.2e-06 Score=67.84 Aligned_cols=96 Identities=17% Similarity=-0.016 Sum_probs=80.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHH
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVV 216 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 216 (430)
+...|..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 56678888889999999999999999988863 346778888888999999999999999998764 133577888899
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 043370 217 DLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m 235 (430)
.+|.+.|++++|...|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999998877
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=6.7e-06 Score=64.83 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=86.4
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
+...+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|++++|...+++..+..|.++..+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5677888888899999999999999887 55676 677888888899999999999999999999998999999999
Q ss_pred HHHHhccchhHHHHHHHHHHhC
Q 043370 283 NIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988654
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.5e-05 Score=73.91 Aligned_cols=191 Identities=5% Similarity=-0.126 Sum_probs=118.6
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCC-C---------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCcH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRP-D---------------KITFVSVISSCSELATLGQGQQIHAEVVKAG-ASLDV 107 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~---------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~ 107 (430)
..+.+.|++++|++.|.++.+..... + ...+..+...|...|++++|.+.+..+.+.- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34566677777777777776542111 0 1235666777777777777777777665421 11111
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHhccCC--------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC--C--CC
Q 043370 108 ----GVISSLISMYSRCGCLDDSVKTFLECEY--------S-DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK--E--FE 170 (430)
Q Consensus 108 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~ 170 (430)
.+.+.+...+...|+.+.|..++..... . -..++..+...|...|++++|..++++.... + -+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2334444555566777777777765421 1 1346677788888888888888888876542 1 11
Q ss_pred CC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc---CCccC--HhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 171 AN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY---RRKPR--LEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 171 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
|. ..++..++..|...|++++|..++++..... ..+|. ...+..+...+...|++++|...|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 3467777788888889988888888765431 11111 245677777888889998887776554
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.31 E-value=6.6e-06 Score=78.85 Aligned_cols=95 Identities=17% Similarity=0.055 Sum_probs=77.5
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
...|..+..+|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 3344 67888899999999999999999999999999999999999999999
Q ss_pred hccchhHHHH-HHHHHHh
Q 043370 287 SAKRWQGVSE-FREAMRE 303 (430)
Q Consensus 287 ~~g~~~~a~~-~~~~m~~ 303 (430)
..++++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998774 4555543
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=5.5e-06 Score=62.28 Aligned_cols=97 Identities=10% Similarity=0.068 Sum_probs=86.3
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
....+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...+++..+..|.++..+..+..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778888999999999999999987 3334 6788888888999999999999999999999998999999999999
Q ss_pred HhccchhHHHHHHHHHHhC
Q 043370 286 ASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~ 304 (430)
...|++++|...++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988754
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.0002 Score=64.67 Aligned_cols=217 Identities=8% Similarity=0.064 Sum_probs=154.3
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 043370 84 ELATL-GQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC----------LDDSVKTFLECE---YSDVVLWSSMIAAYG 149 (430)
Q Consensus 84 ~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~d~~~~~~li~~~~ 149 (430)
+.|.+ ++|..+.+.++..++. +..+|+.--......|. +++++.+++.+. +++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44554 5789999999887544 56666655444444333 577888887764 468889988887888
Q ss_pred hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCc-HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhc----
Q 043370 150 FHG--KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGL-KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRC---- 222 (430)
Q Consensus 150 ~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 222 (430)
+.| .+++++.+++++.+.. +-|...|+.-.-.+...|. .+++.+.++.+.+. .+-+...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 877 4899999999999875 4577788877777777887 68999999999875 234666777666665554
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhcCCCCCChhHH
Q 043370 223 ----------GYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTH-----------KSTDMAGRIAEEILGVNPQDAAPYV 279 (430)
Q Consensus 223 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~ 279 (430)
+.++++++.+++. ...| |...|+-+-..+... +.++++++.++++.+++|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888877 3445 677887665555554 4578999999999999997744333
Q ss_pred HHHH---HHHhccchhHHHHHHHHHHhC
Q 043370 280 LLSN---IHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 280 ~l~~---~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.++. .....|..+++...+.++.+-
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3322 222456777888888888653
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=1.5e-05 Score=61.49 Aligned_cols=27 Identities=15% Similarity=0.039 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
+|..+..++...|++++|++.|++.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555556666666666665554
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=2e-05 Score=61.25 Aligned_cols=94 Identities=5% Similarity=-0.100 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++..++.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44455555555555555555555555555432 223444555555555555555555555555444321 3344444444
Q ss_pred HHHhcCCHHHHHHHHh
Q 043370 116 MYSRCGCLDDSVKTFL 131 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~ 131 (430)
+|...|++++|...|+
T Consensus 86 ~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 86 CQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4444444444444443
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=2e-05 Score=75.96 Aligned_cols=118 Identities=9% Similarity=-0.013 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcH
Q 043370 113 LISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLK 189 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 189 (430)
+...|.+.|++++|.+.|++.. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+..++..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445566677777777776543 3356666777777777777777777777766652 23455666666667777777
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHH--HhhcCCHHHHHHHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDL--LGRCGYLDEAAALIR 233 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 233 (430)
++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777666431 1122333334333 556666666666665
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=2.1e-05 Score=60.74 Aligned_cols=59 Identities=10% Similarity=-0.064 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
|..+...+.+.|++++|++.|++.++.. +-+..+|..+..+|...|++++|...+++.+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444431 1223344444444444444444444444443
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1.5e-05 Score=59.22 Aligned_cols=95 Identities=11% Similarity=0.011 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMP---IRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRP--DKITFVSVISS 81 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~ 81 (430)
.++..+...|.+.|++++|...|++.. ..+...|..+...+...|++++|+..|++..+.. +. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 445555556666666666666665432 2345555556666666666666666666665542 22 34555555556
Q ss_pred Hhcc-CChHHHHHHHHHHHHcC
Q 043370 82 CSEL-ATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 82 ~~~~-g~~~~a~~~~~~~~~~g 102 (430)
+... |++++|.+.+..+.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 6666 66666666666655543
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=4.3e-06 Score=80.56 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=54.8
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 261 (430)
.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444432 1112344444555555555555555554444 2223 3445555555555556666666
Q ss_pred HHHHHHhcCCCCCChhHHHHHHH--HHhccchhHHHHHHH
Q 043370 262 RIAEEILGVNPQDAAPYVLLSNI--HASAKRWQGVSEFRE 299 (430)
Q Consensus 262 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 299 (430)
..++++.+++|.+..++..+..+ +...|++++|.+.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666655555555555555544 555556666555554
No 173
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.19 E-value=0.0006 Score=65.76 Aligned_cols=238 Identities=8% Similarity=-0.054 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043370 90 QGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQK 167 (430)
Q Consensus 90 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (430)
.+..+|++++... +.+..+|...+..+.+.|+.+.|..+|++.. +.+...|. .|+...+.++. ++.+.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHH
Confidence 4566788877753 4467888888888999999999999998643 23333333 23332222222 3332221
Q ss_pred ---------CCCC---CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC-CHHHHHHHHHh
Q 043370 168 ---------EFEA---NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG-YLDEAAALIRN 234 (430)
Q Consensus 168 ---------g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~ 234 (430)
+..+ ....|...+....+.+..+.|+.+|+.. +..+ .+...|......-.+.+ +.+.|..+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0011 1244556666666778899999999998 4312 34455544333333334 69999999987
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh----CCCCC
Q 043370 235 M--PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE----RNVKK 308 (430)
Q Consensus 235 m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~~ 308 (430)
. ...-+...|...+.-....|+.+.|..+|+++ +.....|...+..-...|+.+.+..++++..+ .+ ..
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~-~~ 420 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADA-IL 420 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTC-CB
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccc-cC
Confidence 6 22113455777777788899999999999997 23456777778777888999999998887763 11 11
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCcccCC
Q 043370 309 EPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVPDT 357 (430)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~ 357 (430)
+|.. + ...-.+.+.....++.++.+-.-..+.|-.
T Consensus 421 ~~~~----~----------~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 421 PPLP----P----------REHNVQMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp CCCC----C----------C--CCCCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred Cccc----c----------cccHHHHHHHhhhHHHHHHHhhhhccccCC
Confidence 1100 0 011223345566677888887777777755
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=1.6e-05 Score=60.95 Aligned_cols=61 Identities=7% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 44445555555555555555555554432 22344444444444455555555555544443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=8e-06 Score=62.65 Aligned_cols=62 Identities=8% Similarity=-0.010 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 043370 139 VLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVK 201 (430)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 201 (430)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 445556666666666666666666665542 33445555555555666666666666655543
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=1.5e-05 Score=61.00 Aligned_cols=92 Identities=7% Similarity=-0.079 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 043370 40 WITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR 119 (430)
Q Consensus 40 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 119 (430)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.++..+. +...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344455555666666666666655542 234455555555555556666666666555554322 44455555555555
Q ss_pred cCCHHHHHHHHhcc
Q 043370 120 CGCLDDSVKTFLEC 133 (430)
Q Consensus 120 ~g~~~~A~~~~~~~ 133 (430)
.|++++|...|++.
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555443
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=6.7e-05 Score=70.94 Aligned_cols=191 Identities=10% Similarity=0.004 Sum_probs=137.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCc----------------HhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC
Q 043370 79 ISSCSELATLGQGQQIHAEVVKAGASLD----------------VGVISSLISMYSRCGCLDDSVKTFLECEY-----SD 137 (430)
Q Consensus 79 l~~~~~~g~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d 137 (430)
...+.+.|++++|.+.+..+++...... ...+..|+..|.+.|++++|.+.+....+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456678999999999999988643321 12467899999999999999999987642 11
Q ss_pred H----hHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCc--
Q 043370 138 V----VLWSSMIAAYGFHGKGEEAINLFEQMEQ----KEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRK-- 206 (430)
Q Consensus 138 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-- 206 (430)
. ...+.+-..+...|++++|.+++++... .+..+. ..++..+...+...|++++|..+++.+.....-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444455567899999999988754 233333 4567788899999999999999999876542211
Q ss_pred -c-CHhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 207 -P-RLEHYTCVVDLLGRCGYLDEAAALIRNM-------PVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 207 -p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
+ ....+..++..|...|++++|..++++. +..|. ...+..+...+...++++.|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2467888999999999999999998765 21111 34556666667888999999998888863
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=2.1e-05 Score=73.04 Aligned_cols=90 Identities=12% Similarity=-0.016 Sum_probs=78.6
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH 285 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 285 (430)
+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|...++++++++|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4577888999999999999999999887 5556 5778888989999999999999999999999999999999999999
Q ss_pred HhccchhHHHHH
Q 043370 286 ASAKRWQGVSEF 297 (430)
Q Consensus 286 ~~~g~~~~a~~~ 297 (430)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.6e-05 Score=63.43 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 38 IAWITLIAGKAQNGLAEDVLDQYNLMRMVGFR-PD----KITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 38 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
.++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666665542100 11 1244445555555555555555555544
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=9.2e-06 Score=62.51 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 244 WKTLLSACKTHKSTDMAGRIAEEILGVNPQD---AAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 244 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
+..+...+...|++++|...++++.+..|.+ +.++..+..+|...|++++|...++...
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444444444443 3334444444444444444444444443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.7e-05 Score=63.17 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 141 WSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
+..+...|...|++++|+..+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al 36 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRL 36 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444444444455555555444443
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=4.4e-05 Score=58.56 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=46.5
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccCH---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHh
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPRL---EHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN----AIIWKTLLSACKT 253 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~ 253 (430)
.+...|++++|...|+.+.+... .+. ..+..+..+|.+.|++++|...|++. ...|+ ...+..+..++..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444444555444444443211 111 24444445555555555555555444 11221 3445555555666
Q ss_pred cCChhHHHHHHHHHhcCCCCCChh
Q 043370 254 HKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
.|+++.|...++++....|+++..
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHH
Confidence 666777777777666666644433
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=6.8e-06 Score=75.40 Aligned_cols=147 Identities=14% Similarity=-0.043 Sum_probs=82.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 138 VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777778888889999999999988774 454432 223344444332221 136778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH-HhccchhHH
Q 043370 218 LLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIH-ASAKRWQGV 294 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 294 (430)
+|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++++|.+..++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988877 3344 6778888888899999999999999999999998888888877773 445666777
Q ss_pred HHHHHHHHhC
Q 043370 295 SEFREAMRER 304 (430)
Q Consensus 295 ~~~~~~m~~~ 304 (430)
...++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7788777543
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.06 E-value=1.5e-05 Score=63.49 Aligned_cols=62 Identities=16% Similarity=-0.003 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcC-------CCCCChhH----HHHHHHHHhccchhHHHHHHHHHHh
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEILGV-------NPQDAAPY----VLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
..|..+..++...|++++|+..+++.+++ +|++..+| .....++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37777777788888888888888887777 88888888 8888889999999999888887754
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1.7e-05 Score=72.76 Aligned_cols=149 Identities=7% Similarity=0.031 Sum_probs=78.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043370 107 VGVISSLISMYSRCGCLDDSVKTFLECEY--SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 107 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
...+..+...|.+.|++++|...|++... ++.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677889999999999999999998542 2221 1223344444433221 135677777888
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHH
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN-AIIWKTLLSA-CKTHKSTDMAG 261 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~~~~~~a~ 261 (430)
+.|++++|...++...+. .+.+...|..+..+|...|++++|...|++. ...|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888753 1235677888888888888888888888887 55554 3444444444 34456677788
Q ss_pred HHHHHHhcCCCCC
Q 043370 262 RIAEEILGVNPQD 274 (430)
Q Consensus 262 ~~~~~~~~~~p~~ 274 (430)
..++++++..|.+
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 8888888887754
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=1.4e-05 Score=64.57 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 241 AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 241 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
...|..+..++...|+++.|...++++++++|.++.+|..+..+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345666666677777777777777777777777777777777777777777777777776544
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=1.8e-05 Score=63.86 Aligned_cols=67 Identities=18% Similarity=0.066 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...+++.++++|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 456777888888888888888888776 3344 577888888889999999999999999999999766
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=4.4e-06 Score=63.46 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=39.5
Q ss_pred cCcHHHHHHHHHHHhhhcC--CccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 043370 186 CGLKEKGMEFFDLMVKKYR--RKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAG 261 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 261 (430)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|...|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555432 1 1112344445555555555555555555544 2222 2344444444455555555555
Q ss_pred HHHHHHhcCCCCC
Q 043370 262 RIAEEILGVNPQD 274 (430)
Q Consensus 262 ~~~~~~~~~~p~~ 274 (430)
..+++.++..|.+
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 5555555544433
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=5.8e-06 Score=62.78 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=57.7
Q ss_pred hcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHH
Q 043370 150 FHGKGEEAINLFEQMEQKE--FEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDE 227 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 227 (430)
..|++++|+..|++..+.+ -+.+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 3577888888888887753 1223456777777888888888888888888754 12346677778888888888888
Q ss_pred HHHHHHhC
Q 043370 228 AAALIRNM 235 (430)
Q Consensus 228 A~~~~~~m 235 (430)
|...+++.
T Consensus 80 A~~~~~~a 87 (117)
T 3k9i_A 80 GVELLLKI 87 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887766
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.0004 Score=68.19 Aligned_cols=167 Identities=8% Similarity=0.036 Sum_probs=110.7
Q ss_pred HHHHHHHhccC---CCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC--c
Q 043370 124 DDSVKTFLECE---YSDVVLWSSMIAAYGFHGK----------GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG--L 188 (430)
Q Consensus 124 ~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 188 (430)
++|.+.++.+. +.+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 34455554433 2344455554444444444 677777777776653 334556666666666666 5
Q ss_pred HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 043370 189 KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG-YLDEAAALIRNM-PVKA-NAIIWKTLLSACKTH----------- 254 (430)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----------- 254 (430)
++++.+.++++.+. -+-+...|+.-...+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 67777777777654 1235566666666666677 777777777776 4444 566777666665542
Q ss_pred ---CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhH
Q 043370 255 ---KSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQG 293 (430)
Q Consensus 255 ---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 293 (430)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999988887554
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=7.3e-05 Score=71.54 Aligned_cols=144 Identities=6% Similarity=-0.059 Sum_probs=108.6
Q ss_pred CChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---------------HHHHHHHHHH
Q 043370 20 GSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPD---------------KITFVSVISS 81 (430)
Q Consensus 20 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------~~t~~~ll~~ 81 (430)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 445556656654432 356788888889999999999999999888742 222 4788888888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHH
Q 043370 82 CSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 82 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
+.+.|++++|...++++++... .+...+..+..+|.+.|++++|...|++.. ..+...|..+...+.+.++.+++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 378888899999999999999999998764 336678888888888888888776
Q ss_pred H-HHHHHH
Q 043370 159 N-LFEQME 165 (430)
Q Consensus 159 ~-~~~~m~ 165 (430)
+ ++..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 455554
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=7.5e-05 Score=69.26 Aligned_cols=84 Identities=4% Similarity=0.009 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 043370 73 ITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE---YSDVVLWSSMIAAYG 149 (430)
Q Consensus 73 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~ 149 (430)
..|..+..++.+.|++++|...++++++... .+..++..+..+|.+.|++++|.+.|++.. ..+...+..+...+.
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4444555555555555555555555554432 244555555555555555555555555432 224444444444444
Q ss_pred hcCChHHH
Q 043370 150 FHGKGEEA 157 (430)
Q Consensus 150 ~~g~~~~A 157 (430)
..++.+++
T Consensus 353 ~~~~~~~a 360 (370)
T 1ihg_A 353 KIKAQKDK 360 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.90 E-value=1.8e-05 Score=62.94 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 211 HYTCVVDLLGRCGYLDEAAALIRNM--------PVKAN-AIIW----KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|++.++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555556666666666665555544 33775 5677 888889999999999999999999999876655
Q ss_pred HH
Q 043370 278 YV 279 (430)
Q Consensus 278 ~~ 279 (430)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=8.5e-05 Score=71.29 Aligned_cols=124 Identities=11% Similarity=0.054 Sum_probs=97.7
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcC--C---cc-CHhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYR--R---KP-RLEHYTCVVDLLGRCGYLDEAAALIRNM---------PVKAN-AIIWK 245 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 245 (430)
.+...|++++|..++++..+... + .| ...+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999999888765321 1 22 3467899999999999999999988876 34454 45688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhc-----CCCCCC---hhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 246 TLLSACKTHKSTDMAGRIAEEILG-----VNPQDA---APYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 246 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
.|...|...|++++|+.++++.++ ++|+.+ .+...|..++...+++++|+.++..+++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999863 456544 445678888999999999999999998744
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=5.1e-05 Score=56.36 Aligned_cols=92 Identities=12% Similarity=-0.016 Sum_probs=70.7
Q ss_pred CHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC------ChhHH
Q 043370 208 RLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQD------AAPYV 279 (430)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 279 (430)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...+++.++++|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777778888888888888888876 3334 57778888888999999999999999999999977 66677
Q ss_pred HHHHHHHhccchhHHHHHHH
Q 043370 280 LLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 280 ~l~~~~~~~g~~~~a~~~~~ 299 (430)
.+..++...|+++.|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777666654443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=3.2e-05 Score=57.52 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc------HhH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLD------VGV 109 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~ 109 (430)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.++.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 34566677777777777888887777777653 345666777777777777777777777777765322 2 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
+..+..++...|+.+.|...|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 5556666666666665555555443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00012 Score=51.97 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=61.5
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHA 286 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 286 (430)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...+++..+.+|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777777888888888877766 2233 56677778888888899999999999998888888888888877776
Q ss_pred hcc
Q 043370 287 SAK 289 (430)
Q Consensus 287 ~~g 289 (430)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.68 E-value=0.00018 Score=52.62 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 240 NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 240 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+...|..+...+...|++++|...++++++++|.++.+|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888899999999999999999999998899999999999999999999999887754
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=9.7e-05 Score=55.52 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=51.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 228 AAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 228 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|...|++. ...| +...|..+...+...|+++.|...+++.++.+|.+..+|..+..+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444443 3333 4566666777777777777777777777777777777777777777777777777777776654
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=0.0011 Score=51.75 Aligned_cols=109 Identities=8% Similarity=-0.082 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSR----CGCLDDSV 127 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 127 (430)
++++|++.|++..+.| .|+.. +...+...+..++|.+.|++..+.| +...+..|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4667777777776665 33333 4445555556666777777666654 45566666666666 56666666
Q ss_pred HHHhccC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 043370 128 KTFLECE-YSDVVLWSSMIAAYGF----HGKGEEAINLFEQMEQKE 168 (430)
Q Consensus 128 ~~~~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 168 (430)
+.|+... ..++.++..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666543 2355556666666655 556666666666665554
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.61 E-value=0.00083 Score=47.47 Aligned_cols=82 Identities=7% Similarity=0.088 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISM 116 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 116 (430)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+... .+..++..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4566667777777777777777777777653 33556677777777777777777777777776542 255566666655
Q ss_pred HHhc
Q 043370 117 YSRC 120 (430)
Q Consensus 117 ~~~~ 120 (430)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.57 E-value=0.00037 Score=66.91 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=92.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCC---CCC---C-HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc----C-CccC-HhHHH
Q 043370 147 AYGFHGKGEEAINLFEQMEQKE---FEA---N-DVTFVSLLYACSHCGLKEKGMEFFDLMVKKY----R-RKPR-LEHYT 213 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g---~~p---~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~ 213 (430)
.+...|++++|+.++++.++.. +.| + ..+++.|..+|...|++++|..++++....+ | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999998876531 223 2 3578899999999999999999998876531 2 2233 46789
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 214 CVVDLLGRCGYLDEAAALIRNM---------PVKANAI-IWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
.|...|...|++++|+.++++. +..|+.. +.+.+-.++...+.++.|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 3345443 344555567788899999999998863
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.49 E-value=0.0075 Score=59.11 Aligned_cols=168 Identities=11% Similarity=0.021 Sum_probs=99.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 52 LAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT----------LGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
..++|++.++++.+.+ +-+...|+.--.++...++ ++++.+.++.+.+...+ +..+|+--...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3456778887777653 2234446555555555555 67777777777776544 6666766666666667
Q ss_pred --CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc---------
Q 043370 122 --CLDDSVKTFLECE---YSDVVLWSSMIAAYGFHG-KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC--------- 186 (430)
Q Consensus 122 --~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------- 186 (430)
+++++.+.++.+. .++..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 5577777776654 345666766666666666 6677777777766653 33455555544444332
Q ss_pred -----CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 187 -----GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 187 -----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
+.++++.+.+++.... .+-+...|.-+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 3455666666655532 12244555555555555554
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.47 E-value=0.0008 Score=50.33 Aligned_cols=76 Identities=7% Similarity=-0.019 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhc
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 132 (430)
+|+..|++..+.. +.+...+..+...+...|++++|...+++.++... .+...+..+..+|.+.|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555555432 33445555555555566666666666666555432 2445555555555556666665555554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=8.2e-05 Score=59.07 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=61.0
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhc
Q 043370 221 RCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKS----------TDMAGRIAEEILGVNPQDAAPYVLLSNIHASA 288 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 288 (430)
|.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|++.++++|++..+|..+..+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555544 2233 44455555555554443 56999999999999999999999999999987
Q ss_pred c-----------chhHHHHHHHHHHhC
Q 043370 289 K-----------RWQGVSEFREAMRER 304 (430)
Q Consensus 289 g-----------~~~~a~~~~~~m~~~ 304 (430)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999988764
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.44 E-value=0.00073 Score=49.30 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=34.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 137 DVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 137 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555566666666665555542 2234455555555555566666655555554
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.37 E-value=0.0099 Score=60.90 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
...+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555554442 3445555555555555555555555544
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.32 E-value=0.0032 Score=49.00 Aligned_cols=111 Identities=13% Similarity=-0.035 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhh----cCCHHH
Q 043370 152 GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGR----CGYLDE 227 (430)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 227 (430)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46777777777777776 33433 555666666777777777777653 245556666666665 566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCC
Q 043370 228 AAALIRNMPVKANAIIWKTLLSACKT----HKSTDMAGRIAEEILGVN 271 (430)
Q Consensus 228 A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 271 (430)
|.+.|++.-...++..+..|-..|.. .++.++|...+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665222345555555555555 566666666666665543
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.30 E-value=0.00043 Score=65.34 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=86.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----CCCC---CChh
Q 043370 216 VDLLGRCGYLDEAAALIRNM---------PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILG-----VNPQ---DAAP 277 (430)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~ 277 (430)
+.-+.+.|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ +.|. ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999888765 11232 45788888899999999999999998862 3343 4457
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 043370 278 YVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMK 349 (430)
Q Consensus 278 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 349 (430)
++.|..+|...|++++|+.++++..+--. ..-...||...+++..|++...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988754211 1122579999999888888877775
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.23 E-value=0.00057 Score=54.20 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=55.3
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh----------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 043370 49 QNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL----------GQGQQIHAEVVKAGASLDVGVISSLISMYS 118 (430)
Q Consensus 49 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 118 (430)
+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++.++..+. +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445556666666655543 33455555555555555443 2444444444444322 3344444444444
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043370 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYA 182 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 182 (430)
..|.+ .|+.. ...|++++|++.|++..+. .|+...|...+..
T Consensus 92 ~lg~l-----------~P~~~---------~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFL-----------TPDET---------EAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHH-----------CCCHH---------HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred Hhccc-----------Ccchh---------hhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 33321 11100 0015788888888888774 6776666555543
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.21 E-value=0.0018 Score=46.49 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCC
Q 043370 239 ANAIIWKTLLSACKTHKS---TDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
+|+..+..+..++...++ .++|..++++.++.+|.++.+...+...+...|++++|...|+.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 366777777777654444 68999999999999999999999999999999999999999999987653
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.02 E-value=0.052 Score=55.52 Aligned_cols=168 Identities=11% Similarity=-0.002 Sum_probs=102.6
Q ss_pred HHHHcCChHHHHH-HHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043370 15 MYMKSGSLVEGEK-VIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQ 93 (430)
Q Consensus 15 ~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 93 (430)
.....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+. ... -+......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~~---~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD---------QDQ---KFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC---------HHH---HHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC---------cch---heehhhhcCCHHHHHH
Confidence 3445788999988 7655551 22337778888888999988876532 111 1223456789999988
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043370 94 IHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAND 173 (430)
Q Consensus 94 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 173 (430)
+.+.+ .+...|..|..++.+.|+++.|+++|..+.. |..+...|...|+.+...++-
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~------------ 730 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLA------------ 730 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHH------------
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHH------------
Confidence 75432 3678899999999999999999888877543 233333444455554444333
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043370 174 VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236 (430)
Q Consensus 174 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (430)
......|+.+.|...+-+.- -+...+++|.+.+++++|..+-+..+
T Consensus 731 -------~~a~~~~~~~~A~~~~~~~g----------~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 731 -------KDAETTGKFNLAFNAYWIAG----------DIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp -------HHHHHTTCHHHHHHHHHHHT----------CHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred -------HHHHHcCchHHHHHHHHHcC----------CHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 33333444444444433321 01223445555677777777777654
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.96 E-value=0.036 Score=50.35 Aligned_cols=136 Identities=13% Similarity=-0.013 Sum_probs=72.1
Q ss_pred CCCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhh----c----CcHHHHHHHHHHHh
Q 043370 135 YSDVVLWSSMIAAYGF--HG---KGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSH----C----GLKEKGMEFFDLMV 200 (430)
Q Consensus 135 ~~d~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----~----g~~~~a~~~~~~~~ 200 (430)
..+..+|...+.+... .+ +..+|+.+|++..+. .|+ ...+..+..++.. . .........+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3466677766655432 22 347888888888875 454 3444443333321 0 00111111111111
Q ss_pred hhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 043370 201 KKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNP 272 (430)
Q Consensus 201 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 272 (430)
.....+.+..+|..+.-.+...|++++|...++++ ..+|+...|..+-..+.-.|+.++|...++++..++|
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 11122335556666655555567777777766666 3345655555555556666777777777777776666
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.0061 Score=43.80 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 215 VVDLLGRCGYLDEAAALIRNM-PVKA-NAI-IWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
....+.+.|++++|...|++. ...| +.. .|..+...+...|++++|...++++++++|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566778888888877776 3334 455 777777778888888888888888888888777665
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.79 E-value=0.024 Score=51.49 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=43.8
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH
Q 043370 136 SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY 212 (430)
Q Consensus 136 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 212 (430)
.+...|.++...+...|++++|+..+++....+ |+...|..+...+.-.|+.++|.+.+++... +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 455666666555555667777777777666653 5655565556666666777777766666653 34554443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.77 E-value=0.0024 Score=60.20 Aligned_cols=83 Identities=7% Similarity=-0.025 Sum_probs=64.2
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----CCCC---CChhHHHHH
Q 043370 221 RCGYLDEAAALIRNM---------PVKAN-AIIWKTLLSACKTHKSTDMAGRIAEEILG-----VNPQ---DAAPYVLLS 282 (430)
Q Consensus 221 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~~~~l~ 282 (430)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+ ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888887754 23343 45788888999999999999999998862 3443 445788899
Q ss_pred HHHHhccchhHHHHHHHHHHh
Q 043370 283 NIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.+|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999887754
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.74 E-value=0.018 Score=54.18 Aligned_cols=101 Identities=9% Similarity=-0.045 Sum_probs=76.0
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcC--Ccc----CHhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-H
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYR--RKP----RLEHYTCVVDLLGRCGYLDEAAALIRNM---------PVKAN-A 241 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~ 241 (430)
..+..+.+.|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 345556678899999999988875321 122 2467888999999999999999988866 34454 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHh-----cCCCCCChhH
Q 043370 242 IIWKTLLSACKTHKSTDMAGRIAEEIL-----GVNPQDAAPY 278 (430)
Q Consensus 242 ~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~p~~~~~~ 278 (430)
.+++.|...|...|++++|+.++++++ .++|+.+.+-
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 568888889999999999999999986 3467555443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.67 E-value=0.012 Score=42.24 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=38.5
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043370 44 IAGKAQNGLAEDVLDQYNLMRMVGFRPDKI-TFVSVISSCSELATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 44 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 102 (430)
...+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.+++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445666777777777777776653 33445 66666667777777777777777776654
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.009 Score=56.27 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=70.7
Q ss_pred hcCcHHHHHHHHHHHhhhcC--Cc---c-CHhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 043370 185 HCGLKEKGMEFFDLMVKKYR--RK---P-RLEHYTCVVDLLGRCGYLDEAAALIRNM---------PVKAN-AIIWKTLL 248 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 248 (430)
+.|++++|..++++..+... +. | ...+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999998888765311 22 2 2467899999999999999999998876 34455 45688899
Q ss_pred HHHHhcCChhHHHHHHHHHhc-----CCCCCChh
Q 043370 249 SACKTHKSTDMAGRIAEEILG-----VNPQDAAP 277 (430)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 277 (430)
..|...|++++|+.+++++++ ++|+.+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999863 46655443
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.28 E-value=0.24 Score=37.50 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=97.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHH
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 229 (430)
-.|..++..++..+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 357777777777777654 24455666665555555555566666666443322 2456666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCC
Q 043370 230 ALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVK 307 (430)
Q Consensus 230 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (430)
..+-.++. +.......++.....|+-+.-.++...+..-+|.++.....+..+|.+.|+..+|.+++.+.=++|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66655542 44556667788899999999999999977666668999999999999999999999999999888873
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.17 E-value=0.033 Score=39.78 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=47.5
Q ss_pred cCHhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 207 PRLEHYTCVVDLLGRCGY---LDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 207 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|+++.|...|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456666666666654443 67788877776 4445 4566666666788888888888888888888885
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.14 E-value=0.036 Score=43.38 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCC-C-CCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 258 DMAGRIAEEILGVN-P-QDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 258 ~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
+++..+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+
T Consensus 52 ~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 52 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34444444444433 3 22334444444445555555555554444
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.94 E-value=0.038 Score=40.29 Aligned_cols=71 Identities=10% Similarity=0.006 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH
Q 043370 210 EHYTCVVDLLGRCGYLDEAAALIRNM-----P----VKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVL 280 (430)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 280 (430)
.-+..|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++.++.|.++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33444555555555555555555543 0 11346677888888999999999999999999999977655433
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.32 Score=39.02 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=64.2
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
...++|+++.|.++-+++ .+...|..|.......|+.+-|.+.|.+... |..+.-.|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344566666666665544 3455666666666666666666666665432 22233334444555443333
Q ss_pred HHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043370 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEI 267 (430)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 267 (430)
-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 2222221 1 123333445556677777776666653332211 123356666666666554
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.82 E-value=3.4e-06 Score=78.12 Aligned_cols=261 Identities=11% Similarity=0.121 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043370 7 VAGSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELA 86 (430)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 86 (430)
.+|+.|..++.+.+++.+|++-|=+. .|+..|..+|.+..+.|++++-+..+.-.++.. .++..=+.|+-+|++.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence 45556666666666666665554332 233445566666666666666666554443321 12222335555666666
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
++.+-.+++ -.||..-...+.+-+...|.++.|.-+|..+.. |.-|...+.+.|++++|.+.-++
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK--- 195 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK--- 195 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT---
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh---
Confidence 554333322 123444444555666666666666555555432 34455556666777666654332
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHH
Q 043370 167 KEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PV-KANAIIW 244 (430)
Q Consensus 167 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~ 244 (430)
.-+..||-.+-.+|...+.+..|.-.--.++- .......++..|-+.|.+++-..+++.. +. +.....|
T Consensus 196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmF 266 (624)
T 3lvg_A 196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 266 (624)
T ss_dssp ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHH
T ss_pred ---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHH
Confidence 23566788888888888887776555444332 1223344677788889998888888765 43 3577778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHh-cCC-CC------CChhHHHHHHHHHhccchhHHHH
Q 043370 245 KTLLSACKTHKSTDMAGRIAEEIL-GVN-PQ------DAAPYVLLSNIHASAKRWQGVSE 296 (430)
Q Consensus 245 ~~ll~~~~~~~~~~~a~~~~~~~~-~~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 296 (430)
+-|.-.|++.. +++-.+.++... +++ |. ....|.-++-.|.+-..|+.|..
T Consensus 267 TELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 267 TELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 88877777764 444444433322 333 31 45677778888888888877654
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.78 E-value=0.035 Score=43.48 Aligned_cols=87 Identities=14% Similarity=-0.010 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHHH
Q 043370 190 EKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG---YLDEAAALIRNM-PVK-A--NAIIWKTLLSACKTHKSTDMAGR 262 (430)
Q Consensus 190 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~ 262 (430)
..+.+.|.+..+. + .++..+...+..++++++ +++++..++++. ... | +...+-.|--++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444332 2 245555555555666655 444566555554 112 3 23334445556899999999999
Q ss_pred HHHHHhcCCCCCChhH
Q 043370 263 IAEEILGVNPQDAAPY 278 (430)
Q Consensus 263 ~~~~~~~~~p~~~~~~ 278 (430)
.++.+++.+|.|..+.
T Consensus 93 y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCCCCHHHH
Confidence 9999999999765543
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.57 E-value=2 Score=42.21 Aligned_cols=249 Identities=10% Similarity=0.024 Sum_probs=123.5
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLG 89 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 89 (430)
+..+..+.+.+++.....++.. +..+...--....+....|+..+|......+-..| .........++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4445666777788888877666 43344444445666777788777777766666555 233344455555555444332
Q ss_pred H--HHHHHHHHHHcC-----------CCCcH-hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhH---HHHHHHHHHhcC
Q 043370 90 Q--GQQIHAEVVKAG-----------ASLDV-GVISSLISMYSRCGCLDDSVKTFLECEYSDVVL---WSSMIAAYGFHG 152 (430)
Q Consensus 90 ~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~---~~~li~~~~~~g 152 (430)
. ..+=+..+...| ++++. .....++..+.+-..+ ....... .++... +..-+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 2 111111222221 11111 1112222222221111 1111111 111111 1111222333 3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFV----SLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEA 228 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 228 (430)
+.+.|..+|....+.. ..+..... .+.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6788888888876543 22332222 2222334445344555566654432 23333334444445577889999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 043370 229 AALIRNMPVKA--NAIIWKTLLSACKTHKSTDMAGRIAEEILG 269 (430)
Q Consensus 229 ~~~~~~m~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 269 (430)
...|+.|+..+ .....--+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998885443 222223344567778888888888888864
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.45 E-value=0.048 Score=47.60 Aligned_cols=83 Identities=10% Similarity=0.128 Sum_probs=63.9
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhcCCCC-CChhHHHHHHHHHhc-cchhH
Q 043370 225 LDEAAALIRNM-PVKAN---AIIWKTLLSACKT-----HKSTDMAGRIAEEILGVNPQ-DAAPYVLLSNIHASA-KRWQG 293 (430)
Q Consensus 225 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~ 293 (430)
...|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++.++++|+ +..+++.....++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555555555 45555 5677778777877 48999999999999999986 488888888888884 88999
Q ss_pred HHHHHHHHHhCCCC
Q 043370 294 VSEFREAMRERNVK 307 (430)
Q Consensus 294 a~~~~~~m~~~g~~ 307 (430)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999888776654
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.24 E-value=0.85 Score=39.82 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=68.1
Q ss_pred hcCCHHHHHHHHhccCCCCH--hHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhh
Q 043370 119 RCGCLDDSVKTFLECEYSDV--VLWSSMIAA-YGFH--GK------GEEAINLFEQMEQKEFEAN---DVTFVSLLYACS 184 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~d~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 184 (430)
+.|+..+-.+.+.++.+.|+ ..|..++.+ +... |+ ...|..++++..+. .|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 34444555555666654444 456655543 3332 32 45666666766664 455 456777777777
Q ss_pred hc-----CcHHHHHHHHHHHhhhcCCcc--CHhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 043370 185 HC-----GLKEKGMEFFDLMVKKYRRKP--RLEHYTCVVDLLGRC-GYLDEAAALIRNM 235 (430)
Q Consensus 185 ~~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m 235 (430)
.. |+.++|.+.|++..+- .| +..++....+.+++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 63 7778888887777643 45 256666677777764 7777777777765
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.99 E-value=1.1 Score=35.89 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=86.9
Q ss_pred hccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 043370 83 SELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFE 162 (430)
Q Consensus 83 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 162 (430)
.+.|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|.-.|+.+.-.++-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 4568888888887665 3678899999999999999999999988764 3444555666787777666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043370 163 QMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMP 236 (430)
Q Consensus 163 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (430)
.....|- ++.....+...|+++++.++|.+.- --|.... .....|..+.|.++.++++
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG----SLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 5555541 4445556667899999999887652 2222111 1122467778888888775
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.33 E-value=1.3 Score=33.68 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=60.3
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHH
Q 043370 119 RCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDL 198 (430)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 198 (430)
.||++......+-.+.. +....+..+......|+-++-.+++..+... .+|++.....+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555554444444322 3445566777888888888888888886543 477888888888999999999999999888
Q ss_pred HhhhcCCc
Q 043370 199 MVKKYRRK 206 (430)
Q Consensus 199 ~~~~~~~~ 206 (430)
..+. |++
T Consensus 151 AC~k-G~k 157 (172)
T 1wy6_A 151 ACKK-GEK 157 (172)
T ss_dssp HHHT-TCH
T ss_pred HHHh-hhH
Confidence 8776 654
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.20 E-value=0.54 Score=33.93 Aligned_cols=63 Identities=3% Similarity=-0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043370 39 AWITLIAGKAQNGLAEDVLDQYNLMRMVG------FRPDKITFVSVISSCSELATLGQGQQIHAEVVKA 101 (430)
Q Consensus 39 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 101 (430)
-+-.|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455556666666666666666654420 0123444555555666666666666666666554
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.82 E-value=0.61 Score=35.02 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=43.0
Q ss_pred cCHhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 043370 207 PRLEHYTCVVDLLGRCGYLDE---AAALIRNM-PVK-A-NA-IIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPY 278 (430)
Q Consensus 207 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p-~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 278 (430)
|+..+-..+..++.++....+ +..+++.. ... | +. ...-.|.-++.+.|+++.|.+.++.+++.+|.|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 455555555555555555444 55555554 212 3 11 1222344468888899999999999988888765544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.71 E-value=0.47 Score=35.63 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhcCChhH---HHHHHHHHhcCC-C-CCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCCcee
Q 043370 239 ANAIIWKTLLSACKTHKSTDM---AGRIAEEILGVN-P-QDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEPGVS 313 (430)
Q Consensus 239 p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 313 (430)
|+..+--.+..++.+..+... ++.+++.+...+ | ........|.-++.+.|++++|.+..+.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--------- 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------
Confidence 566665566667777776666 999999998776 5 35566778899999999999999999988653
Q ss_pred EEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCc
Q 043370 314 WLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGY 353 (430)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 353 (430)
.|...++......+.++|.+.|+
T Consensus 104 -----------------eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 104 -----------------EPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHC--
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 34445555444556667777663
No 235
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=93.53 E-value=1.2 Score=31.50 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=64.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQM 164 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 164 (430)
....++|..|-+.+...+. ...+--+-+......|++++|..+.+....||.+.|-++-. .+.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3457888888888777653 33333344566788999999999999999999999988754 4567778888777788
Q ss_pred HHCCCCCCHHHHH
Q 043370 165 EQKEFEANDVTFV 177 (430)
Q Consensus 165 ~~~g~~p~~~t~~ 177 (430)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7776 55555554
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.35 Score=48.50 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHHHHhhhcCc-HHHHHHHHHHHhhhcCCccCHhH--HHHHHHHHhhcCC-HHHHHHHHHhC---------CCCC-CHH
Q 043370 177 VSLLYACSHCGL-KEKGMEFFDLMVKKYRRKPRLEH--YTCVVDLLGRCGY-LDEAAALIRNM---------PVKA-NAI 242 (430)
Q Consensus 177 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~-~~~A~~~~~~m---------~~~p-~~~ 242 (430)
..++..+...++ .+.|..+|+++.+. .|.... ...++..+.+.+. --+|.+++.+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 345555555555 58888999988764 343332 2234444433332 11333333221 1111 111
Q ss_pred ---HH---HHHHH----HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHH
Q 043370 243 ---IW---KTLLS----ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAM 301 (430)
Q Consensus 243 ---~~---~~ll~----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 301 (430)
.. ..|+. -|...|+++.|+.+.++....-|.+-.+|..|..+|...|+|+.|.-.+..+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 00 11222 2677899999999999999999999999999999999999999999999987
No 237
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=93.30 E-value=1.1 Score=31.62 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043370 86 ATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQME 165 (430)
Q Consensus 86 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (430)
...++|..|-+.+...+. ...+--+-+......|++++|..+.+....||.+.|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456888888888777653 33333344566788999999999999999999999988744 46788888888887888
Q ss_pred HCCCCCCHHHHHH
Q 043370 166 QKEFEANDVTFVS 178 (430)
Q Consensus 166 ~~g~~p~~~t~~~ 178 (430)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.02 E-value=4.5 Score=35.76 Aligned_cols=143 Identities=8% Similarity=0.038 Sum_probs=82.8
Q ss_pred HHHHHCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHH----HHcC--CCCcHhHHHHH
Q 043370 45 AGKAQNGLAEDVLDQ----YNLMRMVGFRPDKITFVSVISSCSELATLG-QGQQIHAEV----VKAG--ASLDVGVISSL 113 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~l 113 (430)
..+.+.|+...|-++ .+.+.+.++++|......++..+.....-+ .=.++.+.+ .+.| ...++..+..+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 345667777666554 444556678888888887777765533211 112333333 3333 22377888888
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFH---GKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKE 190 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 190 (430)
...|.+.|++.+|+..|---...|...+..|+.-+... |...++- ...-.+++ -|.-.+++.
T Consensus 141 a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~RaVL-~yL~l~n~~ 205 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRLVF-NYLFISNIS 205 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHHHH-HHHHTTBHH
T ss_pred HHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHHHH-HHHHhcCHH
Confidence 99999999999988888633323455555555444433 3333321 11111222 344567888
Q ss_pred HHHHHHHHHhhh
Q 043370 191 KGMEFFDLMVKK 202 (430)
Q Consensus 191 ~a~~~~~~~~~~ 202 (430)
.|..+++...+.
T Consensus 206 ~A~~~~~~f~~~ 217 (312)
T 2wpv_A 206 FAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776543
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.96 E-value=1.2 Score=34.41 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCC
Q 043370 134 EYSDVVLWSSMIAAYGFHGKG------EEAINLFEQMEQKEFEAN 172 (430)
Q Consensus 134 ~~~d~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~ 172 (430)
...|..+|-..+...-+.|++ ++..++|++.... ++|+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 345777777777777777777 7777777777665 5664
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.89 E-value=2.4 Score=32.81 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHCCCh------hHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHhccCChHHHHHHHHHHHH
Q 043370 34 IRNVIAWITLIAGKAQNGLA------EDVLDQYNLMRMVGFRPDKI----TFVSVIS---SCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 34 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~~~~ 100 (430)
..|..+|=..+...-+.|++ ++.+++|++.... ++|+.. .|.-+.- .+...++.+.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777777777777777877 7777777777654 566421 1111110 01122566666666666655
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHh
Q 043370 101 AGASLDVGVISSLISMYSRCGCLDDSVKTFL 131 (430)
Q Consensus 101 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 131 (430)
.+ +--..+|......-.+.|++..|++++.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 42 2124444444444445555555555544
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.16 E-value=1.9e-06 Score=79.80 Aligned_cols=232 Identities=13% Similarity=0.088 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 36 NVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 36 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
....|..|..++...++..+|++.|-+. -|+..|..++.++.+.|.++.-...+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3457999999999999999998776322 256678899999999999999999887666543 25566678999
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHH
Q 043370 116 MYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEF 195 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 195 (430)
+|++.+++.+-++++. .|++.-...+..-+...|.++.|.-+|..+.. |..|...+.+.|++..|.+.
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999776444433 35555556677778888888888877765432 33455566777777766543
Q ss_pred HHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 043370 196 FDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDA 275 (430)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 275 (430)
-+ -.-++.+|-.+-.+|...+.+.-|.-.--.+-+.||. ...++.-|-..|.+++-+.+++..++++.-..
T Consensus 193 Ar-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglErAHm 263 (624)
T 3lvg_A 193 AR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHM 263 (624)
T ss_dssp TT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred HH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence 22 2346778888888999888887665443332122221 12345568889999999999999988886678
Q ss_pred hhHHHHHHHHHhccchhHHHHH
Q 043370 276 APYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
..|.-|.-.|++- +.++..+-
T Consensus 264 GmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 264 GMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp HHHHHHHHHHHSS-CTTHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHH
Confidence 8888888888766 34443333
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.76 E-value=6.8 Score=34.91 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=84.7
Q ss_pred HHHHHCCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHH----HHcC--CCCcHhHHHHH
Q 043370 45 AGKAQNGLAEDVLDQY----NLMRMVGFRPDKITFVSVISSCSELATLG-QGQQIHAEV----VKAG--ASLDVGVISSL 113 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~l 113 (430)
..+.+.|+...|-++- +-+.+.++++|..+...++..+.....-+ .=..+.+.+ .+.| ..-|+.....+
T Consensus 63 ~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~i 142 (336)
T 3lpz_A 63 QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVV 142 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 3466677776655554 44556778889888888888777655321 122333333 3333 34478888999
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHH
Q 043370 114 ISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGM 193 (430)
Q Consensus 114 i~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 193 (430)
...|.+.+++.+|+..|---..+.+..+..|+.-+...+... .+|...-.+++ -|.-.+++..|.
T Consensus 143 g~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~ 207 (336)
T 3lpz_A 143 GTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAAN 207 (336)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHH
T ss_pred HHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHH
Confidence 999999999999999885322333456655554444433221 12222222333 345567788887
Q ss_pred HHHHHHhh
Q 043370 194 EFFDLMVK 201 (430)
Q Consensus 194 ~~~~~~~~ 201 (430)
.+++...+
T Consensus 208 ~~~~~f~~ 215 (336)
T 3lpz_A 208 TAYRIFTS 215 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.71 E-value=0.35 Score=44.66 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh-----CCCCCCCce
Q 043370 245 KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE-----RNVKKEPGV 312 (430)
Q Consensus 245 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 312 (430)
..++.++...|+.+.+...++.+...+|-+...|..|+.+|...|+..+|.+.|+..++ .|+.|.+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556677788888888888888888887778888888888888888888888777643 477766543
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.54 E-value=1.3 Score=31.60 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
|.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.+....+ +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 5667888888888888999999999999999999999999999999976533 33456777664
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.17 E-value=6.8 Score=41.75 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATL 88 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 88 (430)
...++..+.+.+..+.|.++....+. +..+--.+..+|...|++++|.+.|.+.- .|+.++.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhh
Confidence 34566667778888888877665554 44444456777889999999999997753 2222211000 000
Q ss_pred HHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHhc----cCCCC----HhHHHHHHHHHHhcCChHHHH
Q 043370 89 GQGQQIHAEVVKAG--ASLDVGVISSLISMYSRCGCLDDSVKTFLE----CEYSD----VVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 89 ~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~d----~~~~~~li~~~~~~g~~~~A~ 158 (430)
.. ...+.... ...-..-|.-++..+.+.|.++.+.+.-.. ....+ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 00111110 011123344555666666665555443321 22222 125788888888889999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHH
Q 043370 159 NLFEQMEQKEFEANDVTFVSLLYACSHCGLKEK 191 (430)
Q Consensus 159 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 191 (430)
..+-.+.....+ ...+..|+...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 888877654332 3456666666666665543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.97 E-value=2.1 Score=42.98 Aligned_cols=124 Identities=6% Similarity=-0.096 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCC-hHHHHHHHccCCCCC--HHH--HHHHHHHHHHCC-ChhHHHHHHHHHHHC------CCCCCHH----
Q 043370 10 SSLAHMYMKSGS-LVEGEKVIRLMPIRN--VIA--WITLIAGKAQNG-LAEDVLDQYNLMRMV------GFRPDKI---- 73 (430)
Q Consensus 10 ~~li~~~~~~g~-~~~A~~~f~~m~~~~--~~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~---- 73 (430)
..|+..+...++ .+.|..+|+++.+.+ ..+ ...++..+.+.+ +--+|++++.+.++. ..++...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555666 577999998876432 222 223333333333 233566666555431 1222211
Q ss_pred -------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 74 -------TFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 74 -------t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
....-...|...|+++.|.++-++.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112334566899999999999998874 4478999999999999999999999998886
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.07 E-value=5.9 Score=40.70 Aligned_cols=152 Identities=9% Similarity=0.011 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHhhhc
Q 043370 113 LISMYSRCGCLDDSVKTFLECEY--SD-VVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFV---SLLYACSHC 186 (430)
Q Consensus 113 li~~~~~~g~~~~A~~~~~~~~~--~d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~ 186 (430)
|...|...|+-+....++..+.+ .+ +.-.-++.-++...|+.+.+..+.+.+.... .|. .-|. ++..+|+..
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGT 573 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTS
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCC
Confidence 33444455665555555543321 11 1122222233445566666666666665531 111 1222 233456666
Q ss_pred CcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-hHHHHH
Q 043370 187 GLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIWKTLLSACKTHKST-DMAGRI 263 (430)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~-~~a~~~ 263 (430)
|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.++++.+ ...|.+..-.++.-+....|+. ..+...
T Consensus 574 Gn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 7766666666666543 2223332222222333345555555555544 1223333222232233333332 455556
Q ss_pred HHHHh
Q 043370 264 AEEIL 268 (430)
Q Consensus 264 ~~~~~ 268 (430)
+..+.
T Consensus 652 L~~L~ 656 (963)
T 4ady_A 652 LDPLT 656 (963)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.94 E-value=2.4 Score=39.02 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=25.4
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 043370 44 IAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEV 98 (430)
Q Consensus 44 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 98 (430)
+..+...|++.+|+..+..+.... +-+...+..++.++.+.|+..+|.+.|+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444455555554444444332 334444555555555555555555444443
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.79 E-value=1.8 Score=30.69 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=23.1
Q ss_pred HHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 043370 16 YMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVG 67 (430)
Q Consensus 16 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 67 (430)
+...|++++|..+.+....||...|-+|-. .+.|.-+++..-+.++-..|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 334455555555555555555555544433 24444444444444444443
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.71 E-value=5.3 Score=37.49 Aligned_cols=180 Identities=11% Similarity=0.096 Sum_probs=114.3
Q ss_pred CCHHHHHHHHhccC-----CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhh----hc
Q 043370 121 GCLDDSVKTFLECE-----YS----DVVLWSSMIAAYGFHGKGEEAINLFEQMEQ-KEFEANDVTFVSLLYACS----HC 186 (430)
Q Consensus 121 g~~~~A~~~~~~~~-----~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~----~~ 186 (430)
|++++|.+.+-.+. .. .......++..+...|+++...+.+..+.+ .|..+... ..++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcC
Confidence 67888888775443 12 345577788999999999999888876654 34333332 33443332 22
Q ss_pred CcHH--HHHHHHHHHhhhc--CCcc---CHhHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC---HHHHHHHHHHH
Q 043370 187 GLKE--KGMEFFDLMVKKY--RRKP---RLEHYTCVVDLLGRCGYLDEAAALIRNMP-----VKAN---AIIWKTLLSAC 251 (430)
Q Consensus 187 g~~~--~a~~~~~~~~~~~--~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~---~~~~~~ll~~~ 251 (430)
...+ .-..+.+...... .+-. .......|...|...|++.+|.+++.++. ..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222 2222222221100 1111 12344678899999999999999998872 1111 34566677779
Q ss_pred HhcCChhHHHHHHHHHh----cCCC-C--CChhHHHHHHHHHhccchhHHHHHHHHHH
Q 043370 252 KTHKSTDMAGRIAEEIL----GVNP-Q--DAAPYVLLSNIHASAKRWQGVSEFREAMR 302 (430)
Q Consensus 252 ~~~~~~~~a~~~~~~~~----~~~p-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 302 (430)
...+++..|..+++++. ...+ + ....|...+..+...++|.+|.+.|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999874 2222 1 12466788888999999999888777664
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.68 E-value=1.9 Score=30.57 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=21.6
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043370 47 KAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 47 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
+...|+|++|+.+.+.+. -||...|..+... +.|..+++..-+..+..
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 445555555555443332 4555555444332 34444444444433333
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.14 E-value=26 Score=36.10 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=10.3
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 043370 147 AYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~ 166 (430)
+|+-.|+.....++++.+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 44455555444445555554
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.96 E-value=2.3 Score=32.06 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 153 KGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
|.-+..+-++.+...++.|++....+.+.+|.+.+++..|.++|+.+..+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45577777888888889999999999999999999999999999999765 3344556777664
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.94 E-value=14 Score=39.36 Aligned_cols=118 Identities=8% Similarity=0.008 Sum_probs=61.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------------------------CHhHHHHHHHHHHhcCChHHHHH
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECEYS--------------------------DVVLWSSMIAAYGFHGKGEEAIN 159 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------d~~~~~~li~~~~~~g~~~~A~~ 159 (430)
+......+..+|..+|++++|...|.+.... -..-|..++..+-+.+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455666777777777777777654210 01124445556666666666666
Q ss_pred HHHHHHHCCCCCCH----HHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHH
Q 043370 160 LFEQMEQKEFEAND----VTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLD 226 (430)
Q Consensus 160 ~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 226 (430)
+-+...+..-+-+. ..|..+..++...|++++|...+-.+... . --......||..++..|+++
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChh
Confidence 55554443211111 13455566666666666666666555322 1 12344455555555554443
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.70 E-value=18 Score=33.80 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=113.1
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCcHh--HHHHHHHHHHhcCC
Q 043370 51 GLAEDVLDQYNLMRM-----VGFRPDKITFVSVISSCSELATLGQGQQIHAEVVK-AGASLDVG--VISSLISMYSRCGC 122 (430)
Q Consensus 51 g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~--~~~~li~~~~~~g~ 122 (430)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+ +|..+... ..+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 567777776655543 22344566777888888888888888777666544 33322221 11222333333332
Q ss_pred HH--HHHHHHhccCC---C-------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhhh
Q 043370 123 LD--DSVKTFLECEY---S-------DVVLWSSMIAAYGFHGKGEEAINLFEQMEQK--EFEAN---DVTFVSLLYACSH 185 (430)
Q Consensus 123 ~~--~A~~~~~~~~~---~-------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~ 185 (430)
.+ .-..+.+.... . .......|...|...|++.+|.+++.++... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22333333321 1 1233456778888999999999999998643 22111 1355666778889
Q ss_pred cCcHHHHHHHHHHHhhhc---CCccC--HhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 186 CGLKEKGMEFFDLMVKKY---RRKPR--LEHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
.+++..|..++.++.... ...|+ ...+.+++..+...+++.+|...|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999988874311 11222 245778888888899999988877665
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.41 E-value=3.3 Score=32.61 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNMPV 237 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (430)
.+.---+..+|.+.|++++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 34444456666677777777777776643
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.40 E-value=3.2 Score=29.53 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 55 DVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 55 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++++-++.. ..+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45666667777777888888888888888888888888888766543 2223445655543
No 258
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.35 E-value=10 Score=30.58 Aligned_cols=182 Identities=10% Similarity=-0.030 Sum_probs=110.5
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043370 25 GEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGAS 104 (430)
Q Consensus 25 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 104 (430)
-..+++.+..+|...-...+.++.+.+..+ +...+.++.. .+|...-...+.++...+..+....+. .+.. .
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d 87 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---D 87 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---C
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---C
Confidence 344555666677777777777777777643 3444444443 356666666677777777653333333 3332 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043370 105 LDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
++..+....+.+..+.|+.+....+.+.+..+|...-...+.++.+.++. ++...+..+.. .++..+-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 57777777778888888765555555555667776666677777777764 45555555554 356666667777777
Q ss_pred hcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcC
Q 043370 185 HCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCG 223 (430)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 223 (430)
+.|.. ++...+..+.++ ++...-...+.++.+.+
T Consensus 164 ~~~~~-~~~~~L~~~l~d----~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 164 EIGGE-RVRAAMEKLAET----GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHCSH-HHHHHHHHHHHH----CCHHHHHHHHHHHHHCC
T ss_pred HhCch-hHHHHHHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 77764 455556665543 45555555666665544
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.17 E-value=8.4 Score=29.44 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=12.6
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCC
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQD 274 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~ 274 (430)
++.+.|+++.|.++.+.+++.+|.|
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3445555555555555555555533
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.09 E-value=7.5 Score=30.61 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=18.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 043370 106 DVGVISSLISMYSRCGCLDDSVKTFLECE 134 (430)
Q Consensus 106 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 134 (430)
+..+..-+..+|.+.|+.++|+.+++.++
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 34444556666677777777777766665
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.73 E-value=19 Score=32.07 Aligned_cols=164 Identities=11% Similarity=0.041 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhh
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLF----EQMEQKEFEANDVTFVSLLYACS 184 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 184 (430)
++.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556677788899999998876542 23445566665555444 44556677888877777777665
Q ss_pred hcCc--------HHHHHHHHHHHhhhcC--CccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043370 185 HCGL--------KEKGMEFFDLMVKKYR--RKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTH 254 (430)
Q Consensus 185 ~~g~--------~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 254 (430)
.... +++|..+-.. +| ..-+......+...|.+.+++.+|+.-|- .+.++.+..+..++-.+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~----~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKK----FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHH----HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHh
Confidence 5443 1222222222 13 23367778889999999999999998874 34444446666555554444
Q ss_pred CChhHHHHHHHHHhcCCCCCChhHH-HHHHHHHhccchhHHHHHHHHHHh
Q 043370 255 KSTDMAGRIAEEILGVNPQDAAPYV-LLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 255 ~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
+... ....|. ..+--|...++...|..+++...+
T Consensus 181 ~~~~---------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 181 DESH---------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp SCGG---------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCc---------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3322 222222 234446667888888887776654
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.63 E-value=13 Score=30.18 Aligned_cols=188 Identities=11% Similarity=-0.033 Sum_probs=122.6
Q ss_pred CChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 20 GSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 20 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
++.+....+.+.+..+|...-...+..+.+.|.. ++...+.++.. .+|...-...+.++...++.+....+. .+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHH
Confidence 4444555566666778887777778888888774 44555555554 357777777788888877654333333 333
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043370 100 KAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSL 179 (430)
Q Consensus 100 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 179 (430)
+ .++..+....+.+..+.|+.+....+.+-+..++...-...+.++.+.|+. ++...+..+.. .++..+-...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHH
Confidence 2 467788888888888888865555555556677877777778888888765 45666666654 4677777777
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCC
Q 043370 180 LYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGY 224 (430)
Q Consensus 180 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 224 (430)
+.++.+.+. .++...+..+.++ ++..+-...+.++.+.+.
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC---
T ss_pred HHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC
Confidence 788888776 4566666666554 455566666666665543
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.83 E-value=23 Score=32.37 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCC---cHhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CCHhHH---
Q 043370 73 ITFVSVISSCSELATLGQGQQIHAEVVKA-GASL---DVGVISSLISMYSRCG-CLDDSVKTFLECEY---SDVVLW--- 141 (430)
Q Consensus 73 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~d~~~~--- 141 (430)
.....+...|.+.|+.++..+++...... +.-| .......|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666554321 0011 1233445566655532 22222222222210 111222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 142 ---SSMIAAYGFHGKGEEAINLFEQMEQKEFEAND-----VTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 142 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
.-++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++..+...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13556666666777766666666543111121 123333445556666666666666554
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.05 E-value=16 Score=29.71 Aligned_cols=185 Identities=13% Similarity=0.061 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 043370 54 EDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLEC 133 (430)
Q Consensus 54 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 133 (430)
.+++..+-++++ .+|...-...+.++.+.+..+....+. .+.+ .++..+....+.+..+.|+.+....+.+.+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 445555555543 457777777777777777743333333 3333 357777777888888888765555555566
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHH
Q 043370 134 EYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYT 213 (430)
Q Consensus 134 ~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 213 (430)
..+|...-...+.++.+.|+. ++...+.++.. .|+...-...+.++.+.|..+ +...+..+.+ .++..+-.
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~ 161 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQ 161 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHH
Confidence 677877777788888888875 35555555554 467766667777777777643 4444455543 35666777
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043370 214 CVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHK 255 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 255 (430)
..+.++++.+.. ++...+..+-..++..+-...+.++...+
T Consensus 162 ~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 162 SAADALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 778888888773 44444444411345555555566655444
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.31 E-value=18 Score=29.08 Aligned_cols=171 Identities=13% Similarity=0.057 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHH
Q 043370 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYG 149 (430)
Q Consensus 70 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~ 149 (430)
||...-...+.++...+..+....+.+ +.+ .++..+....+....+.|+.+....+.+.+..++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555333323332 222 3455566666666666666544444445555666666666666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHH
Q 043370 150 FHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAA 229 (430)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 229 (430)
+.|+.+ +...+.++.. .++...-...+.++.+.+.. ++...+..+.+ .++...-...+.++++.|..+ +.
T Consensus 102 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~~-~~ 171 (201)
T 3ltj_A 102 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSAADALGEIGGER-VR 171 (201)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCSHH-HH
T ss_pred HhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCchh-HH
Confidence 766643 4444444443 34555555556666665543 23333444433 245556666666677666533 44
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc
Q 043370 230 ALIRNMPVKANAIIWKTLLSACKTH 254 (430)
Q Consensus 230 ~~~~~m~~~p~~~~~~~ll~~~~~~ 254 (430)
..+..+-..++..+-...+.++.+.
T Consensus 172 ~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 172 AAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3333331124444444444444443
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.96 E-value=17 Score=31.18 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 148 YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
..+.|+.++|+.....-++.. +-|...-..++..+|-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555566665555555542 3344444445555555666666655555544
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.19 E-value=8.5 Score=29.05 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 043370 56 VLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVV 99 (430)
Q Consensus 56 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 99 (430)
..+-++.+...++.|++....+.+.+|-+.+++..|.++++-++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444555666666666666666666666666665543
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.55 E-value=18 Score=27.29 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=19.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNPQDAAP 277 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 277 (430)
|.-++.+.|+++.|.+..+.+++.+|.|..+
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3345666777777777777777777765443
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.61 E-value=20 Score=26.96 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=10.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 043370 144 MIAAYGFHGKGEEAINLFEQMEQ 166 (430)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~ 166 (430)
|.-|+.+.|++++|.+..+.+.+
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344444555555555444444
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.86 E-value=52 Score=28.94 Aligned_cols=168 Identities=10% Similarity=0.051 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHh
Q 043370 108 GVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINL----FEQMEQKEFEANDVTFVSLLYAC 183 (430)
Q Consensus 108 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~ 183 (430)
..|.++..-|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45667788888999999998886542 3345566776666554 44455677888888777777766
Q ss_pred hhcCc--------HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 043370 184 SHCGL--------KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTH- 254 (430)
Q Consensus 184 ~~~g~--------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~- 254 (430)
..... +.+|..+-.+.-. ...-++.....+...|.+.|++.+|+.-|- .+-.-|...+..++--+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhc
Confidence 54321 1222222221110 022367888899999999999999998775 22111355555555554443
Q ss_pred --CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 255 --KSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 255 --~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
|...++--.. ...+--|...|+...|..+++...+
T Consensus 180 ~~~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 180 DDIEDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TCCCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4333322111 1223345577888899888887653
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.82 E-value=8.7 Score=32.95 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 043370 217 DLLGRCGYLDEAAALIRNM-PVKA-NAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQ 273 (430)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 273 (430)
..+.+.|++++|++....- .-+| |...-..|+..+|-.|++++|.+-++...+++|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3466889999988876654 5556 6777778888899999999999999999999984
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.56 E-value=42 Score=27.31 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=70.7
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHh--cCCCCCChhHHHHHHHHHhccchhHHHHHHH
Q 043370 226 DEAAALIRNM-PVKANAI---IWKTLLSACKTHKSTDMAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSEFRE 299 (430)
Q Consensus 226 ~~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 299 (430)
+.+...|... ..+.|+. .|-..+..| ..++...+..+|..|. +++-.-+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445444 2333443 444444433 2444678899999996 5666677889999999999999999999999
Q ss_pred HHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHHcCccc
Q 043370 300 AMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPRSMEIDLYLEELTSEMKLRGYVP 355 (430)
Q Consensus 300 ~m~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 355 (430)
.=.+++-.|. ..+.....++..+|.+.+++.
T Consensus 140 ~GI~~~A~P~-------------------------~rL~~~~~~F~~R~~~~~~~~ 170 (202)
T 3esl_A 140 LGAENNCRPY-------------------------NRLLRSLSNYEDRLREMNIVE 170 (202)
T ss_dssp HHHHTTCBSH-------------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCccH-------------------------HHHHHHHHHHHHHHHhcCCCC
Confidence 8777765442 233445567888899888843
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.04 E-value=66 Score=29.38 Aligned_cols=281 Identities=11% Similarity=0.065 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC--------CCHHHHHHHHHHHHHC-CChhHHHHHHHHHHHCCCCCCHHHH---
Q 043370 8 AGSSLAHMYMKSGSLVEGEKVIRLMPI--------RNVIAWITLIAGKAQN-GLAEDVLDQYNLMRMVGFRPDKITF--- 75 (430)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~--- 75 (430)
....|...|.+.|+.++..+++..... +....-..|+..+... +..+.-.++..+..+.. +-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 456788999999999999999877642 2344566778877764 33444555555554321 1112233
Q ss_pred ---HHHHHHHhccCChHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHhccC------CCCHhHH
Q 043370 76 ---VSVISSCSELATLGQGQQIHAEVVKAGASLD-----VGVISSLISMYSRCGCLDDSVKTFLECE------YSDVVLW 141 (430)
Q Consensus 76 ---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~d~~~~ 141 (430)
.-++..+...|++.+|.+++..+.+.=-..| ..++-.-+.+|...|++.++...+.... .+++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578888999999999998888876311111 3556677888999999999888876532 1222221
Q ss_pred HH--H--HHHHH-hcCChHHHHHHHHHHHH----CCCCC---CHHHHHHHHHHhhhcCcHHHHHHHHH-HHhhhcCCccC
Q 043370 142 SS--M--IAAYG-FHGKGEEAINLFEQMEQ----KEFEA---NDVTFVSLLYACSHCGLKEKGMEFFD-LMVKKYRRKPR 208 (430)
Q Consensus 142 ~~--l--i~~~~-~~g~~~~A~~~~~~m~~----~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~-~~~~~~~~~p~ 208 (430)
.. + .-.+. ..+++..|...|-+..+ .| .| +...|..| .+...... .+-..++. .....+ ..|.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL-~aLl~~~r-~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLL-CKIMLGQS-DDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH-HHHHTTCG-GGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHH-HHHHcCCH-HHHHHHhcccccccc-CCcc
Confidence 11 1 22345 68899999888877642 11 12 11233222 22222222 12122221 211222 3466
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 043370 209 LEHYTCVVDLLGRCGYLDEAAALIRNM--PVKANAIIW---KTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSN 283 (430)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 283 (430)
...+..++.+| +.+++.+...+++.. .+..|.... ..|..... ...+.++ ..|-...++..+..
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHHHHH
Confidence 66666677665 556777777777765 233455431 11111111 1112222 24656677777777
Q ss_pred HHHhccchhHHHHHHHHHHhCCC
Q 043370 284 IHASAKRWQGVSEFREAMRERNV 306 (430)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~ 306 (430)
.+.- ..++++..+-+|...|.
T Consensus 325 ~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHCc--CHHHHHHHHHHHHHCCC
Confidence 7654 67899999999988775
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.83 E-value=19 Score=33.40 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHH--H
Q 043370 109 VISSLISMYSRCGCLDDSVKTFLECEY------SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQ---KEFEANDVTF--V 177 (430)
Q Consensus 109 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~--~ 177 (430)
+...+.+.|.++|++++|.+.|.++.. .-+..+-..|..+...+++..+...+.+... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567788999999999999999988752 2345677788888888999999888888743 2222332211 1
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhhhcC
Q 043370 178 SLLYACSHCGLKEKGMEFFDLMVKKYR 204 (430)
Q Consensus 178 ~ll~a~~~~g~~~~a~~~~~~~~~~~~ 204 (430)
.-...+...+++..|...|-+....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 112234567888888888877665533
No 275
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=69.60 E-value=35 Score=26.03 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHhhhcCc---HHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043370 170 EANDVTFVSLLYACSHCGL---KEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNM-PVKAN 240 (430)
Q Consensus 170 ~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 240 (430)
.|+..|-.....++.++.. ..++..+++.+.+. +..-.....-.|.-++.+.|++++|.+..+.+ ..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4565555555555655554 44677777777654 21112334445666777888888888877776 45553
No 276
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=69.56 E-value=25 Score=26.27 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYSD---VVLWSSMIAAYGFHGK--GEEAINLFEQMEQKEFEAND 173 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 173 (430)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4568888888999999999999987652 2344455556655432 45677888888777654433
No 277
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=69.11 E-value=53 Score=27.88 Aligned_cols=235 Identities=11% Similarity=-0.039 Sum_probs=130.7
Q ss_pred HccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----hHHHHHHHHHHHHcCCC
Q 043370 29 IRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT----LGQGQQIHAEVVKAGAS 104 (430)
Q Consensus 29 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----~~~a~~~~~~~~~~g~~ 104 (430)
++.+..+|...-..-+.++.+.|. .+++..+.++.+ .++...-...+.++.+.+. ......++...... .
T Consensus 29 ~~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d 102 (280)
T 1oyz_A 29 FRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--D 102 (280)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--C
T ss_pred HHHHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--C
Confidence 334455666655556666666664 446666666664 3566666666777777663 22333344322122 3
Q ss_pred CcHhHHHHHHHHHHhcCC-----HHHHHHHHh-ccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043370 105 LDVGVISSLISMYSRCGC-----LDDSVKTFL-ECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVS 178 (430)
Q Consensus 105 ~~~~~~~~li~~~~~~g~-----~~~A~~~~~-~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 178 (430)
++..+....+.+..+.|. ...+...+. .+..++...-...+.++...|+. ++...+.++.. .++...-..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~ 178 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVRNW 178 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHHHH
Confidence 466666667777766652 334444443 34567777777777788877764 35555555554 356555555
Q ss_pred HHHHhhhcC-cHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043370 179 LLYACSHCG-LKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKST 257 (430)
Q Consensus 179 ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 257 (430)
.+.+....+ ....+...+..+.+ .++..+-...+.++++.|..+....+...+. .|+ .-...+.++...|+.
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~~ 251 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGDK 251 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCCG
T ss_pred HHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCch
Confidence 566665554 22345555555543 3566666777788888886544444444443 244 233456667777764
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHH
Q 043370 258 DMAGRIAEEILGVNPQDAAPYVLLS 282 (430)
Q Consensus 258 ~~a~~~~~~~~~~~p~~~~~~~~l~ 282 (430)
.+...+.++....+ +.......+
T Consensus 252 -~~~~~L~~~l~~~~-~~~~~~~~~ 274 (280)
T 1oyz_A 252 -TLLPVLDTMLYKFD-DNEIITSAI 274 (280)
T ss_dssp -GGHHHHHHHHTTSS-CCHHHHHHH
T ss_pred -hhhHHHHHHHhcCC-CcHHHHHHH
Confidence 56666666665444 443333333
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.33 E-value=9.7 Score=32.42 Aligned_cols=24 Identities=4% Similarity=-0.069 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCChHHHHHHHccCC
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMP 33 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~ 33 (430)
++.+...++.|+++....+++.-.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCC
Confidence 455666677788777777776543
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=66.98 E-value=35 Score=25.46 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCC---CHHHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCC
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPIR---NVIAWITLIAGKAQNGL--AEDVLDQYNLMRMVGFR 69 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 69 (430)
.+.++.=|...|+.++|.+.++.+..| ..+....+..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456788888888888888888888765 23445555555555432 35567777777777643
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.22 E-value=59 Score=30.04 Aligned_cols=96 Identities=13% Similarity=0.025 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHH----H
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN--DVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHY----T 213 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~ 213 (430)
++..+..-|.+.|++++|.+.|.++...-..+. ...+..++..+...+++..+...+.++.....-.++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566788899999999999999999987533333 3567778888999999999999999886432222332221 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 043370 214 CVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m 235 (430)
+-.-.+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2222344678899998887765
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=63.49 E-value=21 Score=27.63 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYSD---VVLWSSMIAAYGFHGK--GEEAINLFEQMEQKEFEAN 172 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 172 (430)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4668888888999999999999987652 3344555556655332 4567778888877765443
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.19 E-value=1.1e+02 Score=31.60 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=41.0
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPIRNVIAWITLIAGKAQNGLAEDVLDQYNLMR 64 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 64 (430)
++..+...|..+.|.++....+. +..+--.+..+|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 67777888999988888777775 44443457788999999999999998764
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.32 E-value=31 Score=29.06 Aligned_cols=205 Identities=12% Similarity=0.013 Sum_probs=96.7
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHh--HHHHHHHH
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI---TFVSVISSCSELATLGQGQQIHAEVVKAGASLDVG--VISSLISM 116 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~ 116 (430)
+.+...++.|+.+....+ .+.|..++.. .-.+.+...+..|+.+- .+.+++.|..++.. ...+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHH
Confidence 445556788887655444 4555444322 11234444556677654 44455566554421 11234455
Q ss_pred HHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------------HHHHHH
Q 043370 117 YSRCGCLDDSVKTFLECEY---SDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVT------------FVSLLY 181 (430)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------------~~~ll~ 181 (430)
.+..|+.+-+..+++.-.. +|...++.+. ..+..|+.+ +++.+.+.|..++... -.+.+.
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence 5667888877777765332 2322233333 334556644 4444555555443210 012233
Q ss_pred HhhhcCcHHHHHHHHHHHhhhcCCccC---HhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 043370 182 ACSHCGLKEKGMEFFDLMVKKYRRKPR---LEHYTCVVDLLGRCGY---LDEAAALIRNMPVKAN---AIIWKTLLSACK 252 (430)
Q Consensus 182 a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~---~~~~~~ll~~~~ 252 (430)
..+..|..+-...+++. +|..++ ..-.+.+..+. ..|. ..+..+++-+.+..++ ..-. +.+...+
T Consensus 154 ~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~-t~L~~A~ 227 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDE----MGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAV 227 (285)
T ss_dssp HHHHHTCHHHHHHHHHT----SCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHTTCCSSCCCTTSC-CHHHHHH
T ss_pred HHHHcCCHHHHHHHHHh----cCCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHcCCCCCCcCCCCC-cHHHHHH
Confidence 34456666655555543 233332 22223333322 3333 2445555554443332 2222 2334455
Q ss_pred hcCChhHHHHHHH
Q 043370 253 THKSTDMAGRIAE 265 (430)
Q Consensus 253 ~~~~~~~a~~~~~ 265 (430)
..|+.+....+++
T Consensus 228 ~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 228 EKKHLGLVQRLLE 240 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 6777776665555
No 284
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=61.76 E-value=64 Score=31.79 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=47.7
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC----------------ChhHHHHHHHHHh-------cCCCC
Q 043370 218 LLGRCGYLDEAAALIRNMPVKAN-AIIWKTLLSACKTHK----------------STDMAGRIAEEIL-------GVNPQ 273 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~----------------~~~~a~~~~~~~~-------~~~p~ 273 (430)
-+...|++++|..+|.-.+.-.. ..+.|.+++-....- -...|.++.+... +..+.
T Consensus 452 ~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 531 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVK 531 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHH
T ss_pred HHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHH
Confidence 44577888888888888762211 234455555433211 1224444444322 22233
Q ss_pred CChhHHHHHHHH-----HhccchhHHHHHHHHH
Q 043370 274 DAAPYVLLSNIH-----ASAKRWQGVSEFREAM 301 (430)
Q Consensus 274 ~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m 301 (430)
+..++..|+... .+.|+|++|.+.++++
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 445666665543 6899999999887765
No 285
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=61.47 E-value=74 Score=26.90 Aligned_cols=216 Identities=7% Similarity=-0.025 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----HHHHHHHHhc--cCCCCHhHHHH
Q 043370 70 PDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC----LDDSVKTFLE--CEYSDVVLWSS 143 (430)
Q Consensus 70 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~--~~~~d~~~~~~ 143 (430)
+|...-...+.++...+.. .+...+..+.+ .++..+....+.+..+.|. ......++.. ...++...-..
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~ 110 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT 110 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHH
Confidence 4555555566666666653 33443434443 2456666666666776663 3333344432 23556665566
Q ss_pred HHHHHHhcCC-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 144 MIAAYGFHGK-----GEEAINLFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 144 li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
.+.++...+. ...+...+..+.. .|+..+-...+.+....|..+ +...+..+.+ .++...-...+.+
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~a 182 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHHHHHH
Confidence 6666666542 3456666655554 467666666777777776633 4444444443 2455555666666
Q ss_pred HhhcC-CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHH
Q 043370 219 LGRCG-YLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEF 297 (430)
Q Consensus 219 ~~~~g-~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 297 (430)
+++.| .-..+...+..+-..++..+-...+.++...|+.+....+.+.+.. | + .-...+.++...|.. ++...
T Consensus 183 L~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d--~-~--vr~~a~~aL~~i~~~-~~~~~ 256 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK--N-T--VYDDIIEAAGELGDK-TLLPV 256 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS--S-S--CCHHHHHHHHHHCCG-GGHHH
T ss_pred HHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC--c-c--HHHHHHHHHHhcCch-hhhHH
Confidence 66665 2234444444432346777767777778888865444344333322 3 2 233445566666664 44555
Q ss_pred HHHHHh
Q 043370 298 REAMRE 303 (430)
Q Consensus 298 ~~~m~~ 303 (430)
+..+.+
T Consensus 257 L~~~l~ 262 (280)
T 1oyz_A 257 LDTMLY 262 (280)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 554443
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.67 E-value=29 Score=26.80 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCCC---HHHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCC
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPIRN---VIAWITLIAGKAQNGL--AEDVLDQYNLMRMVGFR 69 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 69 (430)
.+.++.=|...|+.++|.+.++.+..|. .++..++..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4667888888888888888888887652 3445555555555322 34566777777776643
No 287
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=58.63 E-value=1.9 Score=24.49 Aligned_cols=17 Identities=35% Similarity=0.852 Sum_probs=12.5
Q ss_pred CCccccc-cccccccCCC
Q 043370 413 ASRFHHF-RNGKCSCGDY 429 (430)
Q Consensus 413 ~~~~h~f-~~g~csc~~~ 429 (430)
|-.-|.. ++|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4445555 7899999976
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.76 E-value=1e+02 Score=27.73 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=11.3
Q ss_pred HHHHHHHHcCChHHHHHHHccCC
Q 043370 11 SLAHMYMKSGSLVEGEKVIRLMP 33 (430)
Q Consensus 11 ~li~~~~~~g~~~~A~~~f~~m~ 33 (430)
++|.=|...++.++|...++.+.
T Consensus 59 ~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 59 PIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34444444555555555555444
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.34 E-value=41 Score=28.80 Aligned_cols=118 Identities=8% Similarity=0.057 Sum_probs=59.4
Q ss_pred hhcCcHHHHHHHHHHHhhhcCCccCH---hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043370 184 SHCGLKEKGMEFFDLMVKKYRRKPRL---EHYTCVVDLLGRCGYLDEAAALIRNMPVKANAIIWKTLLSACKTHKSTDMA 260 (430)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a 260 (430)
+..|..+-+..+++. |..++. .-+.+.+...+..|+.+-+..+++.-....+...-.+.+...+..|+.+.+
T Consensus 103 ~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp HHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 455666555444443 333332 111233444556778777766666543222321223344455677888888
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCCCC
Q 043370 261 GRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKKEP 310 (430)
Q Consensus 261 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 310 (430)
..+++.-...+..+..-....+......|+. ++.+.+.+.|..++.
T Consensus 178 ~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 7777775554432322222212222334443 455666677876554
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.12 E-value=54 Score=27.46 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=42.5
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLMRMV--GFRP----DKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLIS 115 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 115 (430)
--++.+....++++|++++++..+. ++++ +.......+..-.....-..+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 4567888899999999998877542 2222 1111122222222222222233333333 22 233444444555
Q ss_pred HHHhcCCHHHHHHHHh
Q 043370 116 MYSRCGCLDDSVKTFL 131 (430)
Q Consensus 116 ~~~~~g~~~~A~~~~~ 131 (430)
...+.|+-+.|..+|-
T Consensus 100 ~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHH
Confidence 6666666666666653
No 291
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.01 E-value=1.2e+02 Score=26.70 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 232 IRNMPVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 232 ~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
|...+.+|. ..+..+-++.+.+++++..|..+.++++++.|. ....++|.+++..-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHhcCC
Confidence 444466663 345677777799999999999999999999983 224456777777665443
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.24 E-value=85 Score=24.17 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=39.7
Q ss_pred hHHHHHHHHHh--cCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCC
Q 043370 258 DMAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKK 308 (430)
Q Consensus 258 ~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 308 (430)
+.+..+|..|. +++..-+..|...+..+...|++.+|.++++.=.+++-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34778888886 4445567788888999999999999999998877766544
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.83 E-value=1.8e+02 Score=27.65 Aligned_cols=64 Identities=5% Similarity=0.005 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHC-CCCCCH--HHHH-HHHHHHhccCChHHHHHHHHHHHH
Q 043370 37 VIAWITLIAGKAQNGLAEDVLDQYNLMRMV-GFRPDK--ITFV-SVISSCSELATLGQGQQIHAEVVK 100 (430)
Q Consensus 37 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~-~ll~~~~~~g~~~~a~~~~~~~~~ 100 (430)
...+|.+++.|.+.+.+++|..+..+..-- .-.+|. .+|. .+....+-.+++.+|.+.+.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356677777777777777777777665310 000111 1111 123334445566666665555544
No 294
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=46.58 E-value=5 Score=26.00 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=18.1
Q ss_pred ceEEEecCCccccccccccccC
Q 043370 406 REIIVRDASRFHHFRNGKCSCG 427 (430)
Q Consensus 406 ~~~~~~~~~~~h~f~~g~csc~ 427 (430)
..|-+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566899999999999997644
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.56 E-value=1.6e+02 Score=26.36 Aligned_cols=78 Identities=10% Similarity=0.155 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC--cHHHHHHHHHHHhhhcCCccCHhHHHHHHH
Q 043370 140 LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG--LKEKGMEFFDLMVKKYRRKPRLEHYTCVVD 217 (430)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 217 (430)
..+.++.=|...|+.++|.+.++++..-.+. ...+...+..+.-+.+ ..+...+++..+.+. |+-+.......+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHH
Confidence 3567888899999999999999998632211 2344455555655543 345577777777665 55444443333333
Q ss_pred HH
Q 043370 218 LL 219 (430)
Q Consensus 218 ~~ 219 (430)
.+
T Consensus 297 vl 298 (358)
T 3eiq_C 297 IY 298 (358)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.09 E-value=1.1e+02 Score=23.83 Aligned_cols=50 Identities=6% Similarity=0.038 Sum_probs=39.5
Q ss_pred HHHHHHHHHh--cCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCC
Q 043370 259 MAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKK 308 (430)
Q Consensus 259 ~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 308 (430)
.+..+|..|. +++..-+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3667788886 4555567788899999999999999999999877776544
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.54 E-value=1.4e+02 Score=24.30 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=49.1
Q ss_pred HHHHHHHhccC--CCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHH
Q 043370 124 DDSVKTFLECE--YSDVV---LWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFD 197 (430)
Q Consensus 124 ~~A~~~~~~~~--~~d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 197 (430)
+.+.+.|.... ..|+. .|-..+..+ ..+...++.++|..|...|+--. +.-|..-...+...|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444433 23443 344444333 13446678888888877776544 3445566666777788888888888
Q ss_pred HHhhhcCCccC
Q 043370 198 LMVKKYRRKPR 208 (430)
Q Consensus 198 ~~~~~~~~~p~ 208 (430)
.-++. +-.|-
T Consensus 140 ~GI~~-~A~P~ 149 (202)
T 3esl_A 140 LGAEN-NCRPY 149 (202)
T ss_dssp HHHHT-TCBSH
T ss_pred HHHHc-CCccH
Confidence 77665 55553
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.50 E-value=43 Score=26.45 Aligned_cols=21 Identities=0% Similarity=-0.113 Sum_probs=14.0
Q ss_pred HHHHHHcCChHHHHHHHccCC
Q 043370 13 AHMYMKSGSLVEGEKVIRLMP 33 (430)
Q Consensus 13 i~~~~~~g~~~~A~~~f~~m~ 33 (430)
+...+..|+.+....++..-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTT
T ss_pred HHHHHHhccHHHHHHHHHcCC
Confidence 344556778888888776544
No 299
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.65 E-value=1.1e+02 Score=24.65 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCCCCHH--HHH-----HHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 043370 225 LDEAAALIRNMPVKANAI--IWK-----TLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNI 284 (430)
Q Consensus 225 ~~~A~~~~~~m~~~p~~~--~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 284 (430)
++.|+.+++.+...-|.. .-. ..+..|.+.|.+++|.+++++..+..+.+...-.-|+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 566777887774332211 111 223348889999999999999877666454444444333
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.13 E-value=90 Score=26.06 Aligned_cols=86 Identities=10% Similarity=0.117 Sum_probs=40.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHH
Q 043370 145 IAAYGFHGKGEEAINLFEQMEQK--EFEA----NDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDL 218 (430)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 218 (430)
+..+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+.. .++...-...+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Confidence 44555666777777766655331 1221 111112222222222222233333344421 3344445556677
Q ss_pred HhhcCCHHHHHHHHHh
Q 043370 219 LGRCGYLDEAAALIRN 234 (430)
Q Consensus 219 ~~~~g~~~~A~~~~~~ 234 (430)
+.+.|+-++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 7777888888777654
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.21 E-value=98 Score=29.38 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=11.4
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHH
Q 043370 176 FVSLLYACSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 176 ~~~ll~a~~~~g~~~~a~~~~~~~ 199 (430)
++.++.-|.+.+.+++|..+..+.
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcC
Confidence 444444444445555555444443
No 302
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.55 E-value=49 Score=24.28 Aligned_cols=43 Identities=5% Similarity=-0.102 Sum_probs=29.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043370 59 QYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA 101 (430)
Q Consensus 59 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 101 (430)
+|+.+.+..+.|+...-..-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4566666667666555444455556778999999999887653
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.89 E-value=72 Score=26.40 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=40.8
Q ss_pred hHHHHHHHHHh--cCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCC
Q 043370 258 DMAGRIAEEIL--GVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKK 308 (430)
Q Consensus 258 ~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 308 (430)
+.+..+|..|. +++-.-+..|...+..+...|++.+|.++|+.=.+++-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56778888886 4555577788999999999999999999999877666543
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.78 E-value=2.2e+02 Score=24.81 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCC
Q 043370 9 GSSLAHMYMKSGSLVEGEKVIRLMPIR 35 (430)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~f~~m~~~ 35 (430)
...+|.-|...|+.++|...++.+..|
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 467889999999999999999998765
No 305
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.75 E-value=1.9e+02 Score=25.35 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=42.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCC
Q 043370 232 IRNMPVKAN--AIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERN 305 (430)
Q Consensus 232 ~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 305 (430)
|...+.+|. ..+...-++.+.+++++..|..+.++++++.|. + ...++|.+++..-.+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~-------------~~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-P-------------EVAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-H-------------HHHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-H-------------HHHHHHHHHHHHHhcCC
Confidence 444466663 345667777799999999999999999999883 1 23455777777665544
No 306
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.11 E-value=1.9e+02 Score=25.92 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYS 136 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 136 (430)
..+++.=|...|+.++|...++++..|
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 345666666667777777777666655
No 307
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.83 E-value=26 Score=22.03 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=18.0
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCH
Q 043370 50 NGLAEDVLDQYNLMRMVG-FRPDK 72 (430)
Q Consensus 50 ~g~~~~A~~~~~~m~~~g-~~p~~ 72 (430)
.=+++.|+..|.++...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 448999999999998765 66654
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.72 E-value=1e+02 Score=20.31 Aligned_cols=61 Identities=7% Similarity=0.257 Sum_probs=39.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 043370 61 NLMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGC 122 (430)
Q Consensus 61 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 122 (430)
+.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777776544 45556665553 455677888888777666666666667777776664
No 309
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.19 E-value=1.3e+02 Score=22.92 Aligned_cols=62 Identities=5% Similarity=0.247 Sum_probs=43.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 61 NLMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 61 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
+.|.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34667787776544 34555555555 5667999999998887777777766677777777754
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.81 E-value=1.2e+02 Score=22.93 Aligned_cols=62 Identities=8% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 61 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34566787766543 344445545555667888888888877666777777777888887754
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.74 E-value=1.3e+02 Score=22.74 Aligned_cols=60 Identities=5% Similarity=0.060 Sum_probs=27.5
Q ss_pred HHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCHhHHHHHHHHHhhcCCH
Q 043370 164 MEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRLEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 164 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 225 (430)
+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|----++.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 4455555554322 2333333344444555666666543 3333444433444555555544
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.52 E-value=61 Score=22.66 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=25.7
Q ss_pred CCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHH
Q 043370 121 GCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAI 158 (430)
Q Consensus 121 g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 158 (430)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677777777777777777777777776656554443
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.26 E-value=4.6e+02 Score=27.09 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccC----HhHHHHHHHHHhhcC
Q 043370 175 TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPR----LEHYTCVVDLLGRCG 223 (430)
Q Consensus 175 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g 223 (430)
-|..++..+-+.+.++.+.++-+..++... ..| ...|+.+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 577888888888888888887777765321 112 235666666665544
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.87 E-value=1.1e+02 Score=23.99 Aligned_cols=15 Identities=0% Similarity=-0.097 Sum_probs=8.5
Q ss_pred HhcCCHHHHHHHHhc
Q 043370 118 SRCGCLDDSVKTFLE 132 (430)
Q Consensus 118 ~~~g~~~~A~~~~~~ 132 (430)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 445666666665554
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.79 E-value=1.4e+02 Score=26.34 Aligned_cols=81 Identities=19% Similarity=0.063 Sum_probs=38.2
Q ss_pred HHhhcCCHHHHHHHHHhCC------CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccc
Q 043370 218 LLGRCGYLDEAAALIRNMP------VK-ANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKR 290 (430)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~------~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 290 (430)
.-+..|+.+-+..+++... +. .|..-++.| ...+..|+.+.+..+++.-...+..+..-...| ...+..|+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCC
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhCh
Confidence 3456788887777776531 11 122222223 334466776655555443222222222222222 23345566
Q ss_pred hhHHHHHHHH
Q 043370 291 WQGVSEFREA 300 (430)
Q Consensus 291 ~~~a~~~~~~ 300 (430)
.+-+..+++.
T Consensus 257 ~~~v~~Ll~~ 266 (364)
T 3ljn_A 257 VLLTKELLQK 266 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666655554
No 316
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.56 E-value=1e+02 Score=23.94 Aligned_cols=70 Identities=10% Similarity=0.179 Sum_probs=47.9
Q ss_pred hhHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCCH
Q 043370 53 AEDVLDQYNL-MRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKA--GASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 53 ~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~ 123 (430)
.+++++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544 45568777653 456667777777778899999999887 6666766666667777777743
No 317
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.48 E-value=2.1e+02 Score=25.89 Aligned_cols=114 Identities=10% Similarity=0.020 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCC---HHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhc
Q 043370 10 SSLAHMYMKSGSLVEGEKVIRLMPIRN---VIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKI--TFVSVISSCSE 84 (430)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~ 84 (430)
.+.+...+..|+++-+..+++.-..++ ..-.+ .+...+..|+.+-+..++ +.|..++.. .-.+.+...+.
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHH
Confidence 345677778899998888887644332 11122 333345566655444443 334333211 11123334445
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHhc
Q 043370 85 LATLGQGQQIHAEVVKAGASLDVG--VISSLISMYSRCGCLDDSVKTFLE 132 (430)
Q Consensus 85 ~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 132 (430)
.|..+-+. .+++.|..++.. ...+-+...++.|+.+-+..+++.
T Consensus 90 ~g~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 90 IGHTNMVK----LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HTCHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 56655443 334445443321 111233444566777777666654
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.46 E-value=1.4e+02 Score=26.07 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=10.7
Q ss_pred HHHHHHHHCCChhHHHHHHHHH
Q 043370 42 TLIAGKAQNGLAEDVLDQYNLM 63 (430)
Q Consensus 42 ~li~~~~~~g~~~~A~~~~~~m 63 (430)
.++.-|...|+.++|.+.++++
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 3444444445555555554444
No 319
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=30.42 E-value=14 Score=25.47 Aligned_cols=30 Identities=27% Similarity=0.219 Sum_probs=23.9
Q ss_pred CCchHHHHHHHHHHHHHHHcCcccCCCCcc
Q 043370 332 PRSMEIDLYLEELTSEMKLRGYVPDTGADM 361 (430)
Q Consensus 332 ~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~ 361 (430)
++..+++..+++-..+++..|+.||...+-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 345678888888889999999999986543
No 320
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.08 E-value=1.6e+02 Score=21.76 Aligned_cols=61 Identities=10% Similarity=0.269 Sum_probs=41.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 62 LMRMVGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 62 ~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
.|.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4566787766544 34555555555 5667899999998887777777766667777777644
No 321
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.22 E-value=1.1e+02 Score=23.18 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 043370 58 DQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCG 121 (430)
Q Consensus 58 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 121 (430)
++-+.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 5 ~~~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp THHHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
No 322
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.19 E-value=2.1e+02 Score=22.63 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------------CCH-HHHHHHHHH
Q 043370 120 CGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFE----------------AND-VTFVSLLYA 182 (430)
Q Consensus 120 ~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~-~t~~~ll~a 182 (430)
.|.+..++-++.....-...-|.++ +|-+..++..|+..++.+.+..+. -|. .-++.+...
T Consensus 46 ngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l 123 (242)
T 3kae_A 46 NGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL 123 (242)
T ss_dssp TTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHH
Confidence 5666666665555433223333333 556667777777777777644333 122 345555566
Q ss_pred hhhcCcHHHHHHHHHHH
Q 043370 183 CSHCGLKEKGMEFFDLM 199 (430)
Q Consensus 183 ~~~~g~~~~a~~~~~~~ 199 (430)
|.+.|+.++|...+..-
T Consensus 124 ltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 124 CTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHhhhHhhhh
Confidence 77788888888776643
No 323
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.67 E-value=99 Score=24.93 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=26.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhC
Q 043370 247 LLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRER 304 (430)
Q Consensus 247 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 304 (430)
.+...+..|+.+.+..+++.-...+..+..-. .-+......|+.+-+..+++...+.
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 34445567777766666555322221121111 2233445566666665555544433
No 324
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=28.20 E-value=12 Score=18.40 Aligned_cols=13 Identities=54% Similarity=1.518 Sum_probs=9.1
Q ss_pred ccccccc--ccCCCC
Q 043370 418 HFRNGKC--SCGDYW 430 (430)
Q Consensus 418 ~f~~g~c--sc~~~~ 430 (430)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 6788887 566655
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.99 E-value=2e+02 Score=21.83 Aligned_cols=13 Identities=8% Similarity=-0.074 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 043370 189 KEKGMEFFDLMVK 201 (430)
Q Consensus 189 ~~~a~~~~~~~~~ 201 (430)
.-.|.++++.+.+
T Consensus 42 ~~sa~ei~~~l~~ 54 (150)
T 2xig_A 42 HLSPEEITHSIRQ 54 (150)
T ss_dssp CBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3344444444433
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.88 E-value=1.9e+02 Score=21.93 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=41.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 61 NLMRMVGFRPDKITFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 61 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456677765543 3445555555566778889999988877777777777777888888754
No 327
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.82 E-value=3.1e+02 Score=23.97 Aligned_cols=128 Identities=11% Similarity=0.107 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHHC-C----CCCCHHHHHHH---HHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 043370 52 LAEDVLDQYNLMRMV-G----FRPDKITFVSV---ISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCL 123 (430)
Q Consensus 52 ~~~~A~~~~~~m~~~-g----~~p~~~t~~~l---l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 123 (430)
.-++|..+|..+... + ..|+....... +..+.+.-+ -+++..+.+.|+.|...+..-++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 457889998888653 1 33443332222 222222222 36788888899999888889999999988889
Q ss_pred HHHHHHHhccC--CCCHhHHHH--HHHH----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhc
Q 043370 124 DDSVKTFLECE--YSDVVLWSS--MIAA----YGFHGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHC 186 (430)
Q Consensus 124 ~~A~~~~~~~~--~~d~~~~~~--li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 186 (430)
+.+.++++.+. .+....+-+ ++.. .....+.++.+..++..... .+......++.-....
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l 307 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhC
Confidence 99999998754 223322222 1111 22334778887777763321 2334455555433333
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.55 E-value=2.2e+02 Score=23.38 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=13.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 043370 216 VDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m 235 (430)
+-.|.+.|.+++|.+++++.
T Consensus 121 V~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHH
Confidence 44556677777777777665
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.39 E-value=1.2e+02 Score=24.45 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=25.1
Q ss_pred hHHHHHHHccCCCC-CHH-------HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 043370 22 LVEGEKVIRLMPIR-NVI-------AWITLIAGKAQNGLAEDVLDQYNLMRM 65 (430)
Q Consensus 22 ~~~A~~~f~~m~~~-~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~ 65 (430)
++.|+.+|+.+.+- |.. .--..+..|.++|.+++|.++|++.-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 45677788777632 210 111233457777777777777777543
No 330
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.38 E-value=81 Score=25.60 Aligned_cols=53 Identities=6% Similarity=-0.043 Sum_probs=24.6
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHh
Q 043370 250 ACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRE 303 (430)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 303 (430)
.....|+.+.+..+++.-...+..+..- .+-+......|+...+.++.+.+.+
T Consensus 183 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g-~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 183 IAARENRYDCVVLFLSRDSDVTLKNKEG-ETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCTTCCCTTS-CCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHhHHHHHHHcCCCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445666655544443322222112111 1223334456666777777776654
No 331
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.28 E-value=47 Score=20.84 Aligned_cols=23 Identities=13% Similarity=-0.084 Sum_probs=11.8
Q ss_pred HhccchhHHHHHHHHHHhCCCCC
Q 043370 286 ASAKRWQGVSEFREAMRERNVKK 308 (430)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~g~~~ 308 (430)
...|+.+.|...+-.|...+..|
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCC
Confidence 34455555555555555444433
No 332
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.87 E-value=52 Score=23.05 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 043370 51 GLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELATLGQGQ 92 (430)
Q Consensus 51 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 92 (430)
...++|.++++.+...| ...|..++.++...++...|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 35666666666666554 245666666665555554443
No 333
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.76 E-value=2.8e+02 Score=24.43 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---HhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCC
Q 043370 110 ISSLISMYSRCGCLDDSVKTFLECEYSD---VVLWSSMIAAYGFHG-KGEEAINLFEQMEQKEF 169 (430)
Q Consensus 110 ~~~li~~~~~~g~~~~A~~~~~~~~~~d---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~ 169 (430)
...++.=|...|+.++|...++++..|. ......+..++-+.. ..+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 3467777888888888888888887653 122223333332211 23455566666665554
No 334
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=26.54 E-value=1.9e+02 Score=25.52 Aligned_cols=42 Identities=7% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 161 FEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 161 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
++.+.+.|+.|...++..++..+++.=.++.+.++++.+...
T Consensus 216 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 216 FAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 334445566666666666666666555666666666666544
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.91 E-value=2e+02 Score=22.95 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=8.0
Q ss_pred hhcCCHHHHHHHHHh
Q 043370 220 GRCGYLDEAAALIRN 234 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~ 234 (430)
++.|+.+-+..+++.
T Consensus 114 ~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 114 ASKNRHEIAVMLLEG 128 (231)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc
Confidence 345666655555543
No 336
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.73 E-value=1.1e+02 Score=22.46 Aligned_cols=43 Identities=12% Similarity=-0.022 Sum_probs=29.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhh
Q 043370 160 LFEQMEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKK 202 (430)
Q Consensus 160 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 202 (430)
+|+.+....+.|+...-..-+..+...++++.|.+++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5556666666666555455555667788888888888887653
No 337
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.59 E-value=1.6e+02 Score=20.05 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCCh
Q 043370 92 QQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSVKTFLECEYSDVVLWSSMIAAYGFHGKG 154 (430)
Q Consensus 92 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~ 154 (430)
..++..+.+.|+- +..-+..+-. .....+.|.++++.++.+...++..++.++...+..
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 3455555555544 2222222221 245667777777777777777777777777766653
No 338
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.54 E-value=1.1e+02 Score=24.68 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=8.6
Q ss_pred ccCChHHHHHHHHHHHHcC
Q 043370 84 ELATLGQGQQIHAEVVKAG 102 (430)
Q Consensus 84 ~~g~~~~a~~~~~~~~~~g 102 (430)
..|+.+.+..+++.+.+.|
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 3455544444444444333
No 339
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.23 E-value=1e+02 Score=25.47 Aligned_cols=54 Identities=4% Similarity=-0.124 Sum_probs=29.5
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHh--ccCChHHHHHHHHHH
Q 043370 45 AGKAQNGLAEDVLDQYNLMRMVGFRPDKIT-------FVSVISSCS--ELATLGQGQQIHAEV 98 (430)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~g~~~~a~~~~~~~ 98 (430)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|..+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334566777777777776666555444222 233333332 456666666666554
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.59 E-value=1.7e+02 Score=22.62 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=31.8
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHhhhcCcHHHHHHHHHHHhhhc-CCccCHhHHHHHHHHHhhcCCH
Q 043370 155 EEAINLFEQ-MEQKEFEANDVTFVSLLYACSHCGLKEKGMEFFDLMVKKY-RRKPRLEHYTCVVDLLGRCGYL 225 (430)
Q Consensus 155 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~ 225 (430)
+.+++-+.+ +.+.|++++..= ..++..+...+..-.|.++++.+.+.. +...+..|----++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 333433333 344566655432 334445555555555666666664420 1122333333334455555554
No 341
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.18 E-value=3.2e+02 Score=24.02 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHC---CCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 043370 54 EDVLDQYNLMRMV---GFRPDKI---TFVSVISSCSELATLGQGQQIHAEVVKAGASLDVGVISSLISMYSRCGCLDDSV 127 (430)
Q Consensus 54 ~~A~~~~~~m~~~---g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 127 (430)
++|..+|..+... ...++.. .....+..+.+.-+ -++++.+.+.|+.|...++.-++..+++.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4566677776653 1222222 22223333333222 357777888888888888888888998888899999
Q ss_pred HHHhccCCC-C----HhHHH--HHHHH----HHhcCChHHHHHHHHHH
Q 043370 128 KTFLECEYS-D----VVLWS--SMIAA----YGFHGKGEEAINLFEQM 164 (430)
Q Consensus 128 ~~~~~~~~~-d----~~~~~--~li~~----~~~~g~~~~A~~~~~~m 164 (430)
++++.+... + ...+- +++.. .....++++.+.+++.+
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 999986532 2 12221 22221 22346777777777653
No 342
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.72 E-value=56 Score=20.52 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043370 155 EEAINLFEQMEQKEFEANDVTFVSLLYAC 183 (430)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 183 (430)
++|.+.|.+|++..-.+...||...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56777777776543333445666666555
No 343
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.70 E-value=3.1e+02 Score=21.83 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=28.2
Q ss_pred HHHHHHHcCChHHHHHHHccCC----CCCHHHHHHHHHHHHHCCChhHHHHHHHH
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMP----IRNVIAWITLIAGKAQNGLAEDVLDQYNL 62 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 62 (430)
.+...++.|+.+....+++.-. .+|..-++.| ...+..|+.+-+..+++.
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL-HIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH-HHHHHcCCHHHHHHHHHc
Confidence 4556677888888888887521 2233333333 334456766655555443
No 344
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.63 E-value=2.8e+02 Score=21.28 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=49.7
Q ss_pred HHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q 043370 124 DDSVKTFLECE--YSDVVLWSSMIAAYGFHGKGEEAINLFEQMEQKEFEAN-DVTFVSLLYACSHCGLKEKGMEFFDLMV 200 (430)
Q Consensus 124 ~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 200 (430)
+.+.+.|.... ..|+.-...-|.- +. ..+++.++|..|...|+--. +.-|..-...+...|++.+|.++|..-+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~y-a~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKF-AE--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHH-HT--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHH-HH--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44456665543 3454433322221 11 12347888888888876554 3446666667778888888888888877
Q ss_pred hhcCCccC
Q 043370 201 KKYRRKPR 208 (430)
Q Consensus 201 ~~~~~~p~ 208 (430)
+. +-.|-
T Consensus 129 ~~-~A~P~ 135 (152)
T 4a1g_A 129 QN-QAEPR 135 (152)
T ss_dssp HT-TCBSH
T ss_pred Hc-CCccH
Confidence 76 56663
No 345
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.59 E-value=1.7e+02 Score=23.59 Aligned_cols=16 Identities=13% Similarity=-0.076 Sum_probs=8.9
Q ss_pred hhcCCHHHHHHHHHhC
Q 043370 220 GRCGYLDEAAALIRNM 235 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~m 235 (430)
++.|+.+-+..+++..
T Consensus 87 ~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcC
Confidence 4556666555555543
No 346
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.24 E-value=3.3e+02 Score=22.02 Aligned_cols=44 Identities=9% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhcC
Q 043370 143 SMIAAYGF---HGKGEEAINLFEQMEQKEFEANDVTFVSLLYACSHCG 187 (430)
Q Consensus 143 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 187 (430)
-+|+++.+ ..+.+.|+-.+-+|++.| .|.-..-..++.+.-..|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 35666644 578999999999999998 665555555555554444
No 347
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.04 E-value=4.7e+02 Score=23.72 Aligned_cols=26 Identities=0% Similarity=-0.026 Sum_probs=14.2
Q ss_pred hHHHHHHHccCC-CCCHHHHHHHHHHH
Q 043370 22 LVEGEKVIRLMP-IRNVIAWITLIAGK 47 (430)
Q Consensus 22 ~~~A~~~f~~m~-~~~~~~~~~li~~~ 47 (430)
+..++++.+.+. +.+...|..++..+
T Consensus 126 ~~~~l~l~~yL~~E~~y~~w~~~~~~l 152 (419)
T 3rjo_A 126 IEKALDLSLYLKHETEIMPVFQGLNEL 152 (419)
T ss_dssp HHHHHHHHGGGGGCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 445555555544 45666666665543
No 348
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.83 E-value=2.2e+02 Score=22.69 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=7.7
Q ss_pred hhcCCHHHHHHHHHh
Q 043370 220 GRCGYLDEAAALIRN 234 (430)
Q Consensus 220 ~~~g~~~~A~~~~~~ 234 (430)
++.|+.+-+..+++.
T Consensus 117 ~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 117 AQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHhc
Confidence 445665555555543
No 349
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.39 E-value=1.6e+02 Score=26.76 Aligned_cols=270 Identities=10% Similarity=0.016 Sum_probs=113.4
Q ss_pred HHHHHHHcCChHHHHHHHccCCC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccC
Q 043370 12 LAHMYMKSGSLVEGEKVIRLMPI---RNVIAWITLIAGKAQNGLAEDVLDQYNLMRMVGFRPDKIT--FVSVISSCSELA 86 (430)
Q Consensus 12 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g 86 (430)
.+...++.|+.+-+.-+++.-.. +|..-++.| ...+..|+.+-+ +.+.+.|..|+... -.+.+...+..|
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-HCAARIGHTNMV----KLLLENNANPNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-HHHHHHTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence 34555667777777777665332 222223333 333455555433 33334444333211 112233334556
Q ss_pred ChHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHH
Q 043370 87 TLGQGQQIHAEVVKAGASLDV--GVISSLISMYSRCGCLDDSVKTFLECEYS---DVVLWSSMIAAYGFHGKGEEAINLF 161 (430)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~ 161 (430)
+.+.+..+++ .+..++. ....+.+...++.|+.+-+..+++.-..+ +...++.+ ...+..|+.+ ++
T Consensus 125 ~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v 195 (437)
T 1n11_A 125 HVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL-HVAVHHNNLD----IV 195 (437)
T ss_dssp CHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHH-HHHHHTTCHH----HH
T ss_pred CHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHH----HH
Confidence 6655444443 3322211 01112344455667777666666653322 21222222 2334455543 34
Q ss_pred HHHHHCCCCCCHH---HHHHHHHHhhhcCcHHHHHHHHHHHhhhcCCccCH---hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043370 162 EQMEQKEFEANDV---TFVSLLYACSHCGLKEKGMEFFDLMVKKYRRKPRL---EHYTCVVDLLGRCGYLDEAAALIRNM 235 (430)
Q Consensus 162 ~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m 235 (430)
+.+.+.|..|+.. ..+ .+...+..|+.+-+..+++. |..++. .-.+ .+...++.|..+-+..+++.-
T Consensus 196 ~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~ 268 (437)
T 1n11_A 196 KLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLLQY-----GGSANAESVQGVT-PLHLAAQEGHAEMVALLLSKQ 268 (437)
T ss_dssp HHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHc-----CCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHhcC
Confidence 4444555444321 122 23334455666555554432 222211 1112 222334566666655555443
Q ss_pred C-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhccchhHHHHHHHHHHhCCCCC
Q 043370 236 P-V-KANAIIWKTLLSACKTHKSTDMAGRIAEEILGVNPQDAAPYVLLSNIHASAKRWQGVSEFREAMRERNVKK 308 (430)
Q Consensus 236 ~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 308 (430)
. . ..+...++.| ...+..|+.+.+..+++.-...+..+..-...| ...+..|+.+- .+.+.+.|..+
T Consensus 269 ~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~gad~ 337 (437)
T 1n11_A 269 ANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGNIKL----VKFLLQHQADV 337 (437)
T ss_dssp CCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHH-HHHHHSSCSHH----HHHHHHTTCCT
T ss_pred CCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHH-HHHHHcCcHHH----HHHHHhcCCCC
Confidence 1 1 1122222222 233456666665555554333333222222222 22334555543 33444455443
No 350
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.25 E-value=3.2e+02 Score=22.28 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHC---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHcCCC
Q 043370 43 LIAGKAQN---GLAEDVLDQYNLMRMVGFRPDKITFVSVISSCSELAT-----LGQGQQIHAEVVKAGAS 104 (430)
Q Consensus 43 li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~g~~ 104 (430)
+|+++.++ ++++.|+-.+.+|++.|-.|.-..-..++.+.-.-|. +..|...++.....|.+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Done!