Query 043371
Match_columns 271
No_of_seqs 207 out of 1454
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 6E-48 1.3E-52 344.9 29.2 226 40-271 63-330 (365)
2 KOG0697 Protein phosphatase 1B 100.0 1.7E-45 3.7E-50 305.0 20.3 228 38-271 18-291 (379)
3 PTZ00224 protein phosphatase 2 100.0 3.5E-43 7.6E-48 315.2 27.6 216 38-271 18-271 (381)
4 KOG0698 Serine/threonine prote 100.0 4.3E-43 9.3E-48 311.8 27.1 221 43-271 41-304 (330)
5 COG0631 PTC1 Serine/threonine 100.0 2.9E-42 6.3E-47 297.2 23.7 224 41-271 7-252 (262)
6 PF00481 PP2C: Protein phospha 100.0 7.9E-43 1.7E-47 300.5 15.0 215 43-263 1-254 (254)
7 smart00332 PP2Cc Serine/threon 100.0 2.3E-36 5E-41 259.6 26.2 219 42-268 6-255 (255)
8 cd00143 PP2Cc Serine/threonine 100.0 3.2E-36 6.9E-41 258.2 26.8 221 43-270 2-254 (254)
9 PRK14559 putative protein seri 100.0 1.2E-36 2.7E-41 287.1 25.1 225 41-271 374-635 (645)
10 KOG0699 Serine/threonine prote 100.0 1.4E-36 3.1E-41 260.1 17.9 132 140-271 329-503 (542)
11 KOG0700 Protein phosphatase 2C 100.0 3.2E-35 7E-40 257.0 18.1 196 61-258 84-378 (390)
12 KOG1323 Serine/threonine phosp 100.0 2.8E-28 6.1E-33 207.3 19.2 194 76-270 142-486 (493)
13 KOG1379 Serine/threonine prote 99.9 3.5E-23 7.5E-28 176.0 19.3 196 61-269 90-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 6.3E-22 1.4E-26 188.0 13.7 221 40-271 520-772 (1081)
15 PF13672 PP2C_2: Protein phosp 99.8 1E-19 2.2E-24 152.4 15.8 168 58-239 8-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 4.8E-17 1E-21 134.2 21.1 183 42-255 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 6.4E-15 1.4E-19 143.9 21.3 185 59-270 564-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 2.8E-12 6E-17 105.5 20.3 174 76-271 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.6 5.1E-06 1.1E-10 75.4 19.5 180 62-271 162-366 (367)
20 PRK10693 response regulator of 69.1 76 0.0016 27.8 10.7 98 62-172 150-259 (303)
21 PF09436 DUF2016: Domain of un 54.3 7.8 0.00017 26.4 1.3 21 211-231 24-44 (72)
22 COG3700 AphA Acid phosphatase 38.7 63 0.0014 26.4 4.4 45 214-258 71-130 (237)
23 PF06972 DUF1296: Protein of u 33.4 63 0.0014 21.1 3.0 25 228-252 19-44 (60)
24 PF01436 NHL: NHL repeat; Int 31.6 87 0.0019 16.6 3.7 21 147-167 8-28 (28)
25 PF05785 CNF1: Rho-activating 28.8 69 0.0015 27.9 3.4 23 140-162 131-153 (281)
26 PRK06369 nac nascent polypepti 26.7 1.9E+02 0.0042 21.6 5.1 42 198-239 38-86 (115)
27 TIGR02276 beta_rpt_yvtn 40-res 25.4 1.2E+02 0.0027 17.1 3.3 18 151-168 3-20 (42)
28 PRK04897 heat shock protein Ht 21.0 1.1E+02 0.0024 26.9 3.4 25 215-239 119-143 (298)
29 TIGR00525 folB dihydroneopteri 20.3 3.1E+02 0.0067 20.1 5.3 50 220-269 42-98 (116)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=6e-48 Score=344.86 Aligned_cols=226 Identities=26% Similarity=0.412 Sum_probs=192.7
Q ss_pred CceeeEEEeccccCCCCCCCCCCCceEEEecccc--------CCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCch
Q 043371 40 TPISHGYHVVEDQSCRGDLDVSDCDSVVVQREQL--------DEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQIR 111 (271)
Q Consensus 40 ~~~~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~--------~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~~ 111 (271)
.-+.+|.++.+|.|+ .|||++++..++. ......||||||||||+.++++++++|++.+.+...+.
T Consensus 63 ~~~~~~~~s~~G~R~------~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~ 136 (365)
T PLN03145 63 PVVRSGAWADIGSRS------SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFP 136 (365)
T ss_pred CceEEEEEccccCCC------CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccc
Confidence 346889999999887 8999988754321 11246899999999999999999999999998766555
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCccCCCcee-EEEEEeCCEEEEEEccCceEEEEeCCeEEECCCCCCCh--hHHHHH
Q 043371 112 RKSKDTLKKAYLGARAKARDAGKADEKWRAGSA-SVMVINGEKLVIANMGEYRAVVCRDGVAHQISSGRQHT--AKRHWS 188 (271)
Q Consensus 112 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~--~e~~ri 188 (271)
..+.++|.++|..++.++.+....+....+||| +++++.++++|||||||||+|++++|++++||.||++. .|++||
T Consensus 137 ~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI 216 (365)
T PLN03145 137 REIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRI 216 (365)
T ss_pred hhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHH
Confidence 678889999999999999876554444568999 99999999999999999999999999999999999998 788899
Q ss_pred HH--------hcCC---CCC----------------CccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHc--
Q 043371 189 RK--------LFSG---TKH----------------SKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRH-- 239 (271)
Q Consensus 189 ~~--------~~~g---l~~----------------~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~-- 239 (271)
.+ +++| +++ .++++|++..+.+.++++|||||||||||+|+++++++++..
T Consensus 217 ~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l 296 (365)
T PLN03145 217 EASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRL 296 (365)
T ss_pred HHcCCceecceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHH
Confidence 87 3333 221 356899999999998889999999999999999999777643
Q ss_pred --cCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcC
Q 043371 240 --IGDAQEAAECLAKEALTRMSRSNISCVVVRFD 271 (271)
Q Consensus 240 --~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~ 271 (271)
..+|+++|+.|++.|+.+++.||+|||||+|+
T Consensus 297 ~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~ 330 (365)
T PLN03145 297 QEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQ 330 (365)
T ss_pred hcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEee
Confidence 46899999999999999999999999999985
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-45 Score=305.02 Aligned_cols=228 Identities=22% Similarity=0.353 Sum_probs=202.7
Q ss_pred CCCceeeEEEeccccCCCCCCCCCCCceEEEecccc-CCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCchh----
Q 043371 38 WMTPISHGYHVVEDQSCRGDLDVSDCDSVVVQREQL-DEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQIRR---- 112 (271)
Q Consensus 38 ~~~~~~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~-~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~~~---- 112 (271)
.-+.+.||.+|++|+|- .|||++.....++ +-.++.||||||||.|+++|++++++|++.+....++..
T Consensus 18 ~GNglryg~SSMQGWR~------eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~ 91 (379)
T KOG0697|consen 18 EGNGLRYGVSSMQGWRV------EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKN 91 (379)
T ss_pred cCCceeeeeccccchhh------hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccC
Confidence 34578999999999999 8999987765443 235899999999999999999999999999987765544
Q ss_pred ----hHHHHHHHHHHHHHHHHHhhcCCC-ccCCCcee-EEEEEeCCEEEEEEccCceEEEEeCCeEEECCCCCCCh--hH
Q 043371 113 ----KSKDTLKKAYLGARAKARDAGKAD-EKWRAGSA-SVMVINGEKLVIANMGEYRAVVCRDGVAHQISSGRQHT--AK 184 (271)
Q Consensus 113 ----~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~--~e 184 (271)
+.+.-++..|.++|+.+....... ....+||| +++++...++|++|+||||++++|+|++..-|.||+|. .|
T Consensus 92 gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~E 171 (379)
T KOG0697|consen 92 GSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKE 171 (379)
T ss_pred CcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHH
Confidence 678889999999999998776633 34558999 99999999999999999999999999999999999999 89
Q ss_pred HHHHHH--------hcCC---------------------CCCCccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHH
Q 043371 185 RHWSRK--------LFSG---------------------TKHSKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVS 235 (271)
Q Consensus 185 ~~ri~~--------~~~g---------------------l~~~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~ 235 (271)
++||+. ++|| ..+.++++|+|........|+|+||+|||+||+|+++|+++
T Consensus 172 keRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelce 251 (379)
T KOG0697|consen 172 KERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCE 251 (379)
T ss_pred HHHHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHH
Confidence 999998 5565 34679999999999999999999999999999999999999
Q ss_pred HHHc----cCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcC
Q 043371 236 LIRH----IGDAQEAAECLAKEALTRMSRSNISCVVVRFD 271 (271)
Q Consensus 236 ~v~~----~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~ 271 (271)
+++. ..+..++|..+++.++-+|++||+|+|+|.|.
T Consensus 252 fv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp 291 (379)
T KOG0697|consen 252 FVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFP 291 (379)
T ss_pred HHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecC
Confidence 9987 57899999999999999999999999999874
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=3.5e-43 Score=315.20 Aligned_cols=216 Identities=23% Similarity=0.370 Sum_probs=179.4
Q ss_pred CCCceeeEEEeccccCCCCCCCCCCCceEEEeccccCCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCchhhHHHH
Q 043371 38 WMTPISHGYHVVEDQSCRGDLDVSDCDSVVVQREQLDEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQIRRKSKDT 117 (271)
Q Consensus 38 ~~~~~~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~~~~~~~~ 117 (271)
....+.+|+++++|.|+ +|||++++... ++..+|+|||||||..+|++++++|...+.+... ....+.
T Consensus 18 ~~~~~~~g~~s~~G~R~------~nED~~~v~~~----~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~--~~~~~~ 85 (381)
T PTZ00224 18 GNSIFRCASACVNGYRE------SMEDAHLLYLT----DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE--PMTDER 85 (381)
T ss_pred CCccEEEEEEeCCCCCC------CCCCeeEeccC----CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc--cccHHH
Confidence 34567899999999988 89999876532 4567999999999999999999999987755422 123456
Q ss_pred HHHHHHHHHHHHHhhcCCCccCCCcee-EEEEEe-CCEEEEEEccCceEEEEeCCeEEECCCCCCCh--hHHHHHHH---
Q 043371 118 LKKAYLGARAKARDAGKADEKWRAGSA-SVMVIN-GEKLVIANMGEYRAVVCRDGVAHQISSGRQHT--AKRHWSRK--- 190 (271)
Q Consensus 118 l~~~~~~~~~~l~~~~~~~~~~~~gtT-~~~~i~-~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~--~e~~ri~~--- 190 (271)
|+++|..+|+++.+... .+||| ++++|. +.++||+||||||+|++++|++++||.||++. .|++||.+
T Consensus 86 l~~a~~~~d~~i~~~~~-----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg 160 (381)
T PTZ00224 86 MEELCLEIDEEWMDSGR-----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGG 160 (381)
T ss_pred HHHHHHHHHHHHHhccc-----CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccC
Confidence 88999999999986543 45888 666654 68999999999999999999999999999998 68889887
Q ss_pred -----hcCC---CC------------------CCccccceEEEEEecCCCcEEEEEeCCCCC-CcChHHHHHHHHc----
Q 043371 191 -----LFSG---TK------------------HSKGSELAVGAEKIDSDTEFVLIASTGIWE-VMKNQEAVSLIRH---- 239 (271)
Q Consensus 191 -----~~~g---l~------------------~~v~~~p~i~~~~l~~~~~~liL~SDGlwd-~l~~~ei~~~v~~---- 239 (271)
+++| ++ +.|+++|++..+.+.++ ++|||||||||| +++++|+.+++..
T Consensus 161 ~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~-D~llLaSDGL~d~~ls~eEi~~iv~~~l~~ 239 (381)
T PTZ00224 161 RVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSN-DFIILACDGVFEGNFSNEEVVAFVKEQLET 239 (381)
T ss_pred EeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCC-CEEEEECCCcCcCccCHHHHHHHHHHHHhc
Confidence 2222 12 23557899999988865 899999999999 8999999999863
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcC
Q 043371 240 IGDAQEAAECLAKEALTRMSRSNISCVVVRFD 271 (271)
Q Consensus 240 ~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~ 271 (271)
..+++++|+.|++.|+.+|+.||||||||+|.
T Consensus 240 ~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 240 CDDLAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 46899999999999999999999999999873
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-43 Score=311.79 Aligned_cols=221 Identities=35% Similarity=0.517 Sum_probs=190.4
Q ss_pred eeEEEeccccCCCCCCCCCCCceEEEecccc----CCC-ceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCchh---hH
Q 043371 43 SHGYHVVEDQSCRGDLDVSDCDSVVVQREQL----DEI-ELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQIRR---KS 114 (271)
Q Consensus 43 ~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~----~~~-~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~~~---~~ 114 (271)
..+.++.+|.|+ .|||++.....+. ... ...||||||||||+.+|+|+.++|+..+.+...+.. ..
T Consensus 41 ~~~~~~~~~~r~------~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~ 114 (330)
T KOG0698|consen 41 LGSLLSIRGRRR------KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDV 114 (330)
T ss_pred ceEEEecCCCCC------ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHH
Confidence 345558888888 7999998876643 223 589999999999999999999999999998877666 48
Q ss_pred HHHHHHHHH-HHHHHHHhhcCCCccCCCcee-EEEEEe-CCEEEEEEccCceEEEEeCC-eEEECCCCCCCh--hHHHHH
Q 043371 115 KDTLKKAYL-GARAKARDAGKADEKWRAGSA-SVMVIN-GEKLVIANMGEYRAVVCRDG-VAHQISSGRQHT--AKRHWS 188 (271)
Q Consensus 115 ~~~l~~~~~-~~~~~l~~~~~~~~~~~~gtT-~~~~i~-~~~l~vanvGDSr~~l~~~g-~~~~lt~dH~~~--~e~~ri 188 (271)
..+++++|. .+|.++.+.. .....+||| +++++. +.++||||+||||++|++.| .+++||.||+|. .|+.||
T Consensus 115 ~~a~~~~F~~~~D~~~~~~~--~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI 192 (330)
T KOG0698|consen 115 KDALRRAFLTKTDSEFLEKR--EDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERI 192 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHH
Confidence 999999999 6999999761 123466777 666666 45999999999999999755 899999999998 899999
Q ss_pred HH------------hcCC------------CC-CCccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHc----
Q 043371 189 RK------------LFSG------------TK-HSKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRH---- 239 (271)
Q Consensus 189 ~~------------~~~g------------l~-~~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~---- 239 (271)
++ +++| ++ +.++++|++....++..++||||+||||||+++++|++++++.
T Consensus 193 ~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~ 272 (330)
T KOG0698|consen 193 EAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELAS 272 (330)
T ss_pred HHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhc
Confidence 99 3344 55 8899999999999999899999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcC
Q 043371 240 IGDAQEAAECLAKEALTRMSRSNISCVVVRFD 271 (271)
Q Consensus 240 ~~~~~~~a~~L~~~A~~~g~~DNiTvivv~l~ 271 (271)
...+..++..|...|..+++.||||||||.|.
T Consensus 273 ~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~ 304 (330)
T KOG0698|consen 273 ISSPLAAAKLLATEALSRGSKDNITVVVVRLK 304 (330)
T ss_pred cccHHHHHHHHHHHHhhcCCCCCeEEEEEEec
Confidence 56899999999999999999999999999984
No 5
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-42 Score=297.16 Aligned_cols=224 Identities=21% Similarity=0.342 Sum_probs=184.0
Q ss_pred ceeeEEEeccccCCCCCCCCCCCceEEEeccccCCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCC----chhh--H
Q 043371 41 PISHGYHVVEDQSCRGDLDVSDCDSVVVQREQLDEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQ----IRRK--S 114 (271)
Q Consensus 41 ~~~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~----~~~~--~ 114 (271)
.+.++..+..|..++ .|||++.+........ ..||+|||||||+++++++++.+.+.+.+... .... +
T Consensus 7 ~~~~~~~s~~g~~R~-----~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~ 80 (262)
T COG0631 7 SLKVAGLSDVGTVRK-----HNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESL 80 (262)
T ss_pred eeeeeeeccCCCccC-----CCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 445666676666554 8999999986433233 67999999999999999988888777755421 1112 6
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CccCCCcee-EEEEEeCCEEEEEEccCceEEEEeCCeEEECCCCCCCh--hHHHHHHH
Q 043371 115 KDTLKKAYLGARAKARDAGKA-DEKWRAGSA-SVMVINGEKLVIANMGEYRAVVCRDGVAHQISSGRQHT--AKRHWSRK 190 (271)
Q Consensus 115 ~~~l~~~~~~~~~~l~~~~~~-~~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~--~e~~ri~~ 190 (271)
.+.|.+++..++..+...... .....+||| +++++.++++|+|||||||+|++++|.+++||+||++. .++.++..
T Consensus 81 ~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~ 160 (262)
T COG0631 81 EELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIIT 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCC
Confidence 899999999999999988652 244678999 99999999999999999999999999999999999998 44444322
Q ss_pred -----hcCC---CCCCcc----ccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 043371 191 -----LFSG---TKHSKG----SELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRHIGDAQEAAECLAKEALTRM 258 (271)
Q Consensus 191 -----~~~g---l~~~v~----~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~~~~~~~~a~~L~~~A~~~g 258 (271)
.+|. ++++++ ..|++....+.++ +|+|||||||||.++++++.++++...+++++++.|++.|+.++
T Consensus 161 ~~~~~~~~~~~~ltralG~~~~~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~~g 239 (262)
T COG0631 161 PEEARSHPRRNALTRALGDFDLLEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALEGG 239 (262)
T ss_pred HHHHHhCccchhhhhhcCCCcccceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 3333 555655 6789999999988 99999999999999999999999988899999999999999999
Q ss_pred CCCCeEEEEEEcC
Q 043371 259 SRSNISCVVVRFD 271 (271)
Q Consensus 259 ~~DNiTvivv~l~ 271 (271)
+.||+|+++|.+.
T Consensus 240 ~~DNiT~ilv~~~ 252 (262)
T COG0631 240 GPDNITVVLVRLN 252 (262)
T ss_pred CCCceEEEEEEee
Confidence 9999999999863
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=7.9e-43 Score=300.53 Aligned_cols=215 Identities=28% Similarity=0.454 Sum_probs=178.1
Q ss_pred eeEEEeccccCCCCCCCCCCCceEEEecccc---CCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCchh--hHHHH
Q 043371 43 SHGYHVVEDQSCRGDLDVSDCDSVVVQREQL---DEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQIRR--KSKDT 117 (271)
Q Consensus 43 ~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~---~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~~~--~~~~~ 117 (271)
.+|+.+++|.|. +|||++++..++. ...+..+|+|||||||..++++++++++..+.+...... .+.++
T Consensus 1 ~~~~~~~~g~r~------~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~a 74 (254)
T PF00481_consen 1 DYGVSSMQGVRK------EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEA 74 (254)
T ss_dssp EEEEEEEECTSS------SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcCeecCCCCCC------cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhc
Confidence 378899999999 8999999987653 346889999999999999999999999987766543332 68899
Q ss_pred HHHHHHH-HHHHHHhhcCCCccCCCcee-EEEEEeCCEEEEEEccCceEEEEeCCeEE-ECCCCCCCh--hHHHHHHH--
Q 043371 118 LKKAYLG-ARAKARDAGKADEKWRAGSA-SVMVINGEKLVIANMGEYRAVVCRDGVAH-QISSGRQHT--AKRHWSRK-- 190 (271)
Q Consensus 118 l~~~~~~-~~~~l~~~~~~~~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~~~g~~~-~lt~dH~~~--~e~~ri~~-- 190 (271)
|..+|.. ++..+...........+||| +++++.++++|+|||||||+|+++++... +||.||+|. .|+.||.+
T Consensus 75 l~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~g 154 (254)
T PF00481_consen 75 LRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAG 154 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT
T ss_pred ccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccc
Confidence 9999999 88888863210034578999 99999999999999999999999998888 999999999 89999999
Q ss_pred -------hcCC------------CCC----CccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHccCC----H
Q 043371 191 -------LFSG------------TKH----SKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRHIGD----A 243 (271)
Q Consensus 191 -------~~~g------------l~~----~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~~~~----~ 243 (271)
++.| +++ +|+++|++..+++.++++|||||||||||+++++|+++++.+... |
T Consensus 155 g~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~ 234 (254)
T PF00481_consen 155 GRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSP 234 (254)
T ss_dssp -GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHH
T ss_pred cccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcH
Confidence 2333 455 899999999999999988999999999999999999999988433 9
Q ss_pred HHHHHHHHHHHHhcCCCCCe
Q 043371 244 QEAAECLAKEALTRMSRSNI 263 (271)
Q Consensus 244 ~~~a~~L~~~A~~~g~~DNi 263 (271)
+.+|+.|++.|+++|+.|||
T Consensus 235 ~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 235 QEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999997
No 7
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.3e-36 Score=259.65 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=183.1
Q ss_pred eeeEEEeccccCCCCCCCCCCCceEEEeccccCCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCch----hhHHHH
Q 043371 42 ISHGYHVVEDQSCRGDLDVSDCDSVVVQREQLDEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQIR----RKSKDT 117 (271)
Q Consensus 42 ~~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~~----~~~~~~ 117 (271)
+.+|+.+..|.|. .|||++++.... ..+..+|+|||||||+.+|+++++.+.+.+.+..... ..+...
T Consensus 6 ~~~~~~~~~~~r~------~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (255)
T smart00332 6 LRYGLSSMQGVRK------PMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEA 77 (255)
T ss_pred eeEEEecCCCCCC------CCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHH
Confidence 4677777667666 899999887542 2568899999999999999999999998887654332 258889
Q ss_pred HHHHHHHHHHHHHhhcCCC-ccCCCcee-EEEEEeCCEEEEEEccCceEEEEeCCeEEECCCCCCCh--hHHHHHHH---
Q 043371 118 LKKAYLGARAKARDAGKAD-EKWRAGSA-SVMVINGEKLVIANMGEYRAVVCRDGVAHQISSGRQHT--AKRHWSRK--- 190 (271)
Q Consensus 118 l~~~~~~~~~~l~~~~~~~-~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~--~e~~ri~~--- 190 (271)
|++++..+++.+....... ....+||| +++++.++++|++|+||||+|+++++++.++|.||++. .|..||..
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~ 157 (255)
T smart00332 78 LRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGG 157 (255)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCC
Confidence 9999999999998876533 23457999 99999999999999999999999999999999999997 67788876
Q ss_pred -----hcCC---CC---------CCccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHccC---CHHHHHHHH
Q 043371 191 -----LFSG---TK---------HSKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRHIG---DAQEAAECL 250 (271)
Q Consensus 191 -----~~~g---l~---------~~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~~~---~~~~~a~~L 250 (271)
++|+ ++ +.+..+|++...++...+++|||||||||++++++++.+++.+.. ++.++|+.|
T Consensus 158 ~~~~~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l 237 (255)
T smart00332 158 FVINGRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRL 237 (255)
T ss_pred EEECCeECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 2333 33 344578999988874456999999999999999999999998755 699999999
Q ss_pred HHHHHhcCCCCCeEEEEE
Q 043371 251 AKEALTRMSRSNISCVVV 268 (271)
Q Consensus 251 ~~~A~~~g~~DNiTvivv 268 (271)
++.|..+++.||+|+|+|
T Consensus 238 ~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 238 IDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHcCCCCCeEEEEC
Confidence 999999999999999985
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=3.2e-36 Score=258.17 Aligned_cols=221 Identities=32% Similarity=0.501 Sum_probs=182.3
Q ss_pred eeEEEeccccCCCCCCCCCCCceEEEeccccCCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCc-----hhhHHHH
Q 043371 43 SHGYHVVEDQSCRGDLDVSDCDSVVVQREQLDEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQI-----RRKSKDT 117 (271)
Q Consensus 43 ~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~-----~~~~~~~ 117 (271)
.+++.+..|.|. .|||++++...... .+..+|+|||||||...++++++.+.+.+.+.... ...+...
T Consensus 2 ~~~~~~~~g~r~------~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~ 74 (254)
T cd00143 2 SAGVSDKGGDRK------TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEA 74 (254)
T ss_pred ceeeecCCCCCC------CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 467777777777 79999998753211 26799999999999998888888887777654321 3567788
Q ss_pred HHHHHHHHHHHHHhhcCC-CccCCCcee-EEEEEeCCEEEEEEccCceEEEEeCCeEEECCCCCCCh--hHHHHHHHh--
Q 043371 118 LKKAYLGARAKARDAGKA-DEKWRAGSA-SVMVINGEKLVIANMGEYRAVVCRDGVAHQISSGRQHT--AKRHWSRKL-- 191 (271)
Q Consensus 118 l~~~~~~~~~~l~~~~~~-~~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~--~e~~ri~~~-- 191 (271)
|+++|..+++.+...... .....+||| +++++.+++++++|+||||+|++++++++++|.||++. .|..||...
T Consensus 75 l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~ 154 (254)
T cd00143 75 LRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGG 154 (254)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCC
Confidence 999999999999877643 234567899 88999999999999999999999999999999999998 677777762
Q ss_pred ------cCC---CCC---------CccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHccC---CHHHHHHHH
Q 043371 192 ------FSG---TKH---------SKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRHIG---DAQEAAECL 250 (271)
Q Consensus 192 ------~~g---l~~---------~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~~~---~~~~~a~~L 250 (271)
+|+ ++. .+..+|++....+.+.+++|||||||||++++++++.+++.... +++++|+.|
T Consensus 155 ~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l 234 (254)
T cd00143 155 RVSNGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQEL 234 (254)
T ss_pred cEEeCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHH
Confidence 222 222 25678999999985556999999999999999999999998876 899999999
Q ss_pred HHHHHhcCCCCCeEEEEEEc
Q 043371 251 AKEALTRMSRSNISCVVVRF 270 (271)
Q Consensus 251 ~~~A~~~g~~DNiTvivv~l 270 (271)
++.|..+++.||+|+|+++|
T Consensus 235 ~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 235 VDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHhCCCCCCEEEEEEeC
Confidence 99999999999999999975
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.2e-36 Score=287.10 Aligned_cols=225 Identities=12% Similarity=0.162 Sum_probs=170.6
Q ss_pred ceeeEEEeccccCCCCCCCCCCCceEEEeccc-----cCC---CceEEEEEecCCCchH----HHHHHHHHhHHHHhCCC
Q 043371 41 PISHGYHVVEDQSCRGDLDVSDCDSVVVQREQ-----LDE---IELWFFGVFDAQVGDS----VARFMQSHFFDRKLKPS 108 (271)
Q Consensus 41 ~~~~g~~s~~G~r~~~~~r~~neD~~~~~~~~-----~~~---~~~~l~~V~DG~gG~~----aa~~~~~~l~~~~~~~~ 108 (271)
.+.++..+..|.+++ .|||++.+.... +.. ....+|+|||||||+. ||+++++.|.+.+.+..
T Consensus 374 ~l~~a~~Td~G~~R~-----~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~ 448 (645)
T PRK14559 374 SLEDAGRTDVGRQRH-----HNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHW 448 (645)
T ss_pred eEEEEEECCCCCCCc-----ccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhh
Confidence 477888898887433 899998765321 111 1357999999999776 66677777777665432
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcCCC---ccCCCcee-EEEEEeCCEEEEEEccCceEEEE-eCCeEEECCCCCCCh-
Q 043371 109 QIRRKSKDTLKKAYLGARAKARDAGKAD---EKWRAGSA-SVMVINGEKLVIANMGEYRAVVC-RDGVAHQISSGRQHT- 182 (271)
Q Consensus 109 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~---~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~-~~g~~~~lt~dH~~~- 182 (271)
.......+.|+++|..+|..+.+..... ....+||| +++++.++++|++||||||+|++ ++|++++||+||++.
T Consensus 449 ~~~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~ 528 (645)
T PRK14559 449 QDELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQ 528 (645)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHH
Confidence 2111346779999999999998764322 34468999 99999999999999999999998 578999999999998
Q ss_pred hHHHH-HHH----hcCC---CCCCccc------cceEEEEEecCCCcEEEEEeCCCCCC--cCh---HHHHHHHHccCCH
Q 043371 183 AKRHW-SRK----LFSG---TKHSKGS------ELAVGAEKIDSDTEFVLIASTGIWEV--MKN---QEAVSLIRHIGDA 243 (271)
Q Consensus 183 ~e~~r-i~~----~~~g---l~~~v~~------~p~i~~~~l~~~~~~liL~SDGlwd~--l~~---~ei~~~v~~~~~~ 243 (271)
.+..+ +.. .+|+ +++++|. +|++..+.+.+ +++||||||||||+ +.. +++..++....++
T Consensus 529 ~lv~~Gi~~~~a~~~p~~~~LTrALG~~~~~~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l 607 (645)
T PRK14559 529 REIQRGVEPQIAYARPDAYQLTQALGPRDNSAIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANL 607 (645)
T ss_pred HHHHhCCCHHHHhcCcccceeeeccCCCCCCcccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHhcCCCH
Confidence 33222 111 2343 6666663 68999888876 49999999999994 554 4456677777789
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEEcC
Q 043371 244 QEAAECLAKEALTRMSRSNISCVVVRFD 271 (271)
Q Consensus 244 ~~~a~~L~~~A~~~g~~DNiTvivv~l~ 271 (271)
+++++.|++.|+.+|++||+|+|||++.
T Consensus 608 ~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 608 DQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 9999999999999999999999999874
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=260.14 Aligned_cols=132 Identities=24% Similarity=0.464 Sum_probs=119.5
Q ss_pred CCcee-EEEEEeCCEEEEEEccCceEEEEeCCeEEECCCCCCCh--hHHHHHHH---------hcCC-------------
Q 043371 140 RAGSA-SVMVINGEKLVIANMGEYRAVVCRDGVAHQISSGRQHT--AKRHWSRK---------LFSG------------- 194 (271)
Q Consensus 140 ~~gtT-~~~~i~~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~--~e~~ri~~---------~~~g------------- 194 (271)
.+||| +|+++.+.+|||||.||||+++.|+|+++-||.||+|. .|..||.+ +++|
T Consensus 329 DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaY 408 (542)
T KOG0699|consen 329 DSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHAY 408 (542)
T ss_pred CCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhhh
Confidence 37899 99999999999999999999999999999999999999 78899998 5565
Q ss_pred --------CCCCccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHc----cCCHHHHHHHHHHHHHhc-----
Q 043371 195 --------TKHSKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRH----IGDAQEAAECLAKEALTR----- 257 (271)
Q Consensus 195 --------l~~~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~----~~~~~~~a~~L~~~A~~~----- 257 (271)
-.+.|++-|+|++..+++.++|+||+|||+|.+|+.++++++|+. ......++..|++.++.-
T Consensus 409 K~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~GD 488 (542)
T KOG0699|consen 409 KKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDGD 488 (542)
T ss_pred hcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCCC
Confidence 235688999999999999999999999999999999999999975 567889999999999974
Q ss_pred -CCCCCeEEEEEEcC
Q 043371 258 -MSRSNISCVVVRFD 271 (271)
Q Consensus 258 -g~~DNiTvivv~l~ 271 (271)
-+.||+|+|++.|+
T Consensus 489 GTGCDNMT~ii~~Fk 503 (542)
T KOG0699|consen 489 GTGCDNMTVIITTFK 503 (542)
T ss_pred CcCCCcceEEEEEec
Confidence 25799999999984
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=256.97 Aligned_cols=196 Identities=28% Similarity=0.410 Sum_probs=162.8
Q ss_pred CCCceEEEeccccCCCceEEEEEecCCCchHHHHHHHHHhHHHHhCC-------------CC------------------
Q 043371 61 SDCDSVVVQREQLDEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKP-------------SQ------------------ 109 (271)
Q Consensus 61 ~neD~~~~~~~~~~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~-------------~~------------------ 109 (271)
.-||++-+.... .+++.|+||||||||.++++|+.++|..++..+ .+
T Consensus 84 ~~edrv~~~~s~--~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAVSE--ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeeeec--cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 356666554332 478999999999999999999999999877611 11
Q ss_pred --c-hhhHHHHHHHHHHHHHHHHHhhcCC-----CccCCCcee-EEEEEeCCEEEEEEccCceEEEEe---CC---eEEE
Q 043371 110 --I-RRKSKDTLKKAYLGARAKARDAGKA-----DEKWRAGSA-SVMVINGEKLVIANMGEYRAVVCR---DG---VAHQ 174 (271)
Q Consensus 110 --~-~~~~~~~l~~~~~~~~~~l~~~~~~-----~~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~~---~g---~~~~ 174 (271)
. ...+.++|.+||.++++++...... .....+||| ++.++.++.+||||+|||||+|.+ +| .+.|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~q 241 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQ 241 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEe
Confidence 1 3568899999999999999765532 244568988 999999999999999999999974 33 6899
Q ss_pred CCCCCCCh--hHHHHHHHhcCC-----------------------------------------------CCCCccccceE
Q 043371 175 ISSGRQHT--AKRHWSRKLFSG-----------------------------------------------TKHSKGSELAV 205 (271)
Q Consensus 175 lt~dH~~~--~e~~ri~~~~~g-----------------------------------------------l~~~v~~~p~i 205 (271)
||.||+.. .|+.||...||. ..|+++++|+|
T Consensus 242 LS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i 321 (390)
T KOG0700|consen 242 LSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSI 321 (390)
T ss_pred cChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceE
Confidence 99999999 889999996664 46789999999
Q ss_pred EEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHcc----CCHHHHHHHHHHHHHhcC
Q 043371 206 GAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRHI----GDAQEAAECLAKEALTRM 258 (271)
Q Consensus 206 ~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~~----~~~~~~a~~L~~~A~~~g 258 (271)
+.+.+.++|.||||+||||||+|+++|++++|.+. ..-+++|+.|++.|+.+.
T Consensus 322 ~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 322 THHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999872 334689999999998764
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-28 Score=207.34 Aligned_cols=194 Identities=22% Similarity=0.297 Sum_probs=158.1
Q ss_pred CceEEEEEecCCCchHHHHHHHHHhHHHHhCCCC--------------------------------------c--hhhHH
Q 043371 76 IELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQ--------------------------------------I--RRKSK 115 (271)
Q Consensus 76 ~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~--------------------------------------~--~~~~~ 115 (271)
.+..+|.+||||.|..+|-.+++.+...+.++.. + ..-+.
T Consensus 142 ~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LVi 221 (493)
T KOG1323|consen 142 ADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVI 221 (493)
T ss_pred CcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhH
Confidence 4678999999999999888888777665533210 0 01267
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccCCCcee-EEEEEeCCEEEEEEccCceEEEEeCCeEEECCCCCCChhHHHHHHH----
Q 043371 116 DTLKKAYLGARAKARDAGKADEKWRAGSA-SVMVINGEKLVIANMGEYRAVVCRDGVAHQISSGRQHTAKRHWSRK---- 190 (271)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~~~~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~~e~~ri~~---- 190 (271)
.+|+.||+.+|+++........ ..+||| ++++.--+++|+||.||||++++|++++++||++.+|..||+|++.
T Consensus 222 GAlEsAFqemDeqiarer~~~~-~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf~ 300 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQVWR-LPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAFR 300 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhhc
Confidence 8999999999999987665322 367888 8888888999999999999999999999999999999999999998
Q ss_pred ------------hcCC----------------------------------------------------------------
Q 043371 191 ------------LFSG---------------------------------------------------------------- 194 (271)
Q Consensus 191 ------------~~~g---------------------------------------------------------------- 194 (271)
.+|.
T Consensus 301 ~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~d 380 (493)
T KOG1323|consen 301 NPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVD 380 (493)
T ss_pred ChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeec
Confidence 0110
Q ss_pred ----CCCCccccceEEEEEecC----CCcEEEEEeCCCCCCcChHHHHHHHHcc------CC---HHHHHHHHHHHHHh-
Q 043371 195 ----TKHSKGSELAVGAEKIDS----DTEFVLIASTGIWEVMKNQEAVSLIRHI------GD---AQEAAECLAKEALT- 256 (271)
Q Consensus 195 ----l~~~v~~~p~i~~~~l~~----~~~~liL~SDGlwd~l~~~ei~~~v~~~------~~---~~~~a~~L~~~A~~- 256 (271)
+++++++.|+|.++.+.+ .|+++||+|||+||+++++|+..+++.. .+ ...+|+.|+..|..
T Consensus 381 snl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~ 460 (493)
T KOG1323|consen 381 SNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQ 460 (493)
T ss_pred CCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCc
Confidence 678899999999999876 3789999999999999999999999761 22 35788888888864
Q ss_pred ------------cCCCCCeEEEEEEc
Q 043371 257 ------------RMSRSNISCVVVRF 270 (271)
Q Consensus 257 ------------~g~~DNiTvivv~l 270 (271)
-|+.|||||.||.+
T Consensus 461 ~k~rgWr~~n~~lgSgDDIsVfVIPL 486 (493)
T KOG1323|consen 461 QKDRGWRMNNGGLGSGDDISVFVIPL 486 (493)
T ss_pred cCCCceeccCCCcCCCCceEEEEEec
Confidence 24789999999976
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.91 E-value=3.5e-23 Score=176.02 Aligned_cols=196 Identities=18% Similarity=0.206 Sum_probs=139.7
Q ss_pred CCCceEEEeccccCCCceEEEEEecCCCchH-----HHHHHHH---HhHHHHhCCCCchhhHHHHHHHHHHHHHHHHHhh
Q 043371 61 SDCDSVVVQREQLDEIELWFFGVFDAQVGDS-----VARFMQS---HFFDRKLKPSQIRRKSKDTLKKAYLGARAKARDA 132 (271)
Q Consensus 61 ~neD~~~~~~~~~~~~~~~l~~V~DG~gG~~-----aa~~~~~---~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 132 (271)
.-||++++..+ ....+.|||||+||+. .+.|..+ +..+.+.+......++...|.+++.++- ..
T Consensus 90 ~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~----~~ 161 (330)
T KOG1379|consen 90 GGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELK----SQ 161 (330)
T ss_pred CCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHh----hc
Confidence 67999999754 6889999999999765 5555433 3344444444444588888888866542 21
Q ss_pred cCCCccCCCcee-EEEEEe--CCEEEEEEccCceEEEEeCCeEEECCCCCCCh-h-HHHHHHHhcCCCCCCccccc---e
Q 043371 133 GKADEKWRAGSA-SVMVIN--GEKLVIANMGEYRAVVCRDGVAHQISSGRQHT-A-KRHWSRKLFSGTKHSKGSEL---A 204 (271)
Q Consensus 133 ~~~~~~~~~gtT-~~~~i~--~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~-~-e~~ri~~~~~gl~~~v~~~p---~ 204 (271)
. ...-++|| +++.+. +++||+||+|||-..++|+|++..-|..+... + -.+ +...-++...++.-.| +
T Consensus 162 ~---~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQ-Ls~~p~~~~~~~~d~p~~ad 237 (330)
T KOG1379|consen 162 K---VPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQ-LSSPPEGYSSYISDVPDSAD 237 (330)
T ss_pred C---CCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCcee-eccCCccccccccCCccccc
Confidence 1 12236677 777777 89999999999999999999999988775544 1 000 0000001223344344 5
Q ss_pred EEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHc-----cCCHHHHHHHHHHHHHh-----------------------
Q 043371 205 VGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRH-----IGDAQEAAECLAKEALT----------------------- 256 (271)
Q Consensus 205 i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~-----~~~~~~~a~~L~~~A~~----------------------- 256 (271)
++.+.+..+ |.|||+||||||.|.+++|.+++.. ..+++..|+.|++.|.+
T Consensus 238 ~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~ 316 (330)
T KOG1379|consen 238 VTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAY 316 (330)
T ss_pred eEEEeccCC-CEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccC
Confidence 566777766 9999999999999999999999965 46799999999999886
Q ss_pred cCCCCCeEEEEEE
Q 043371 257 RMSRSNISCVVVR 269 (271)
Q Consensus 257 ~g~~DNiTvivv~ 269 (271)
.|..|+||+||..
T Consensus 317 gGK~DdITvvls~ 329 (330)
T KOG1379|consen 317 GGKPDDITVVLSS 329 (330)
T ss_pred CCCcccEEEEEec
Confidence 3458999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=6.3e-22 Score=188.03 Aligned_cols=221 Identities=20% Similarity=0.262 Sum_probs=182.2
Q ss_pred CceeeEEEeccccCCCCCCCCCCCceEEEeccccCCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCchhhHHHHHH
Q 043371 40 TPISHGYHVVEDQSCRGDLDVSDCDSVVVQREQLDEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQIRRKSKDTLK 119 (271)
Q Consensus 40 ~~~~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~~~~~~~~l~ 119 (271)
.-++||++.+.|.|.+ +-=+.....++. .+....|+.+||-+......++...+.+++.++.+...+-.+.|+
T Consensus 520 ~~~t~Gv~~~~gqrnk------~c~~~~~v~nf~-~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr 592 (1081)
T KOG0618|consen 520 FLWTYGVAGVSGQRNK------VCSRAVWVENFF-LNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMR 592 (1081)
T ss_pred eheeeccchhcccccc------hhhhhhhhhhcc-cCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 3457999999999995 433333333322 356789999999999999999999999998887665556666699
Q ss_pred HHHHHHHHHHHhhcCCCccCCCceeEEEEEeC--------CEEEEEEccCceEEEEeCCeEEECCCCCCCh---hHHHHH
Q 043371 120 KAYLGARAKARDAGKADEKWRAGSASVMVING--------EKLVIANMGEYRAVVCRDGVAHQISSGRQHT---AKRHWS 188 (271)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~gtT~~~~i~~--------~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~---~e~~ri 188 (271)
.+|...++++...+. ..+|+.+.+.|.. .++++||+|+|.++++++|+..++|+-.... +|.+||
T Consensus 593 ~~fl~~~rklg~~g~----~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI 668 (1081)
T KOG0618|consen 593 NTFLRLNRKLGEEGQ----VLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRI 668 (1081)
T ss_pred HHHHHHhhhhhhhhc----cccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHH
Confidence 999999999976665 2334445555543 4799999999999999999988888765333 889999
Q ss_pred HH---------hcCC------------CCCCccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHccCCHHHHH
Q 043371 189 RK---------LFSG------------TKHSKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRHIGDAQEAA 247 (271)
Q Consensus 189 ~~---------~~~g------------l~~~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~~~~~~~~a 247 (271)
.. +++| +.++|-+.|+|....+++.|+|||+++-++|++|+.+++++.+++..+|-.||
T Consensus 669 ~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AA 748 (1081)
T KOG0618|consen 669 VDSKGFITEDNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAA 748 (1081)
T ss_pred HHhcCeecCCCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHH
Confidence 88 3343 56778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEcC
Q 043371 248 ECLAKEALTRMSRSNISCVVVRFD 271 (271)
Q Consensus 248 ~~L~~~A~~~g~~DNiTvivv~l~ 271 (271)
++|++.|.++|+.||++|+||+++
T Consensus 749 kKL~d~AqSYgc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 749 KKLCDLAQSYGCAENVSVLVVRLN 772 (1081)
T ss_pred HHHHHHHHhcccccCeeEEEEEee
Confidence 999999999999999999999974
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.84 E-value=1e-19 Score=152.38 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=96.6
Q ss_pred CCCCCCceEEEeccccCCCceEEEEEecCCC----chHHHHHHHHHhHHHHhCCCCchhh--HHHHHHHHHHHHHHHH--
Q 043371 58 LDVSDCDSVVVQREQLDEIELWFFGVFDAQV----GDSVARFMQSHFFDRKLKPSQIRRK--SKDTLKKAYLGARAKA-- 129 (271)
Q Consensus 58 ~r~~neD~~~~~~~~~~~~~~~l~~V~DG~g----G~~aa~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~~~~~~~l-- 129 (271)
.++.|||++.+... .+..+++|+||+| |+.+|+.+++.+...+.+....... ....++.+...+...+
T Consensus 8 ~~~~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (212)
T PF13672_consen 8 RGAPNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRA 83 (212)
T ss_dssp TSSS--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhh
Confidence 34489999997643 5567779999999 5557778888888888766543332 2233333332332221
Q ss_pred --HhhcCCCccCCCcee-EEEEEeCCEEEEEEccCceEEE-EeCCeEEECCCCCCChhHHHHHHHhcCCCCCCcc---cc
Q 043371 130 --RDAGKADEKWRAGSA-SVMVINGEKLVIANMGEYRAVV-CRDGVAHQISSGRQHTAKRHWSRKLFSGTKHSKG---SE 202 (271)
Q Consensus 130 --~~~~~~~~~~~~gtT-~~~~i~~~~l~vanvGDSr~~l-~~~g~~~~lt~dH~~~~e~~ri~~~~~gl~~~v~---~~ 202 (271)
............+|| +++++.+++++++|+||||+|+ .++|++..++.+|+.... . .+..+. +.
T Consensus 84 ~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~--~-------~~~~~~~~~~~ 154 (212)
T PF13672_consen 84 FQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP--N-------QTRSLTGDDPE 154 (212)
T ss_dssp --HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH--H-------CTTSCCHHCCC
T ss_pred hhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh--h-------hhhccCccccc
Confidence 011112244567899 9999999999999999999965 579999999999975421 1 122221 22
Q ss_pred c--eEEEEEecCCCcEEEEEeCCCCCCcChHH-HHHHHHc
Q 043371 203 L--AVGAEKIDSDTEFVLIASTGIWEVMKNQE-AVSLIRH 239 (271)
Q Consensus 203 p--~i~~~~l~~~~~~liL~SDGlwd~l~~~e-i~~~v~~ 239 (271)
+ ++....+.+ ++.|+|||||||+.+...+ +..++..
T Consensus 155 ~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 155 PDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp TETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred cCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhh
Confidence 2 444455444 4899999999999998765 5566654
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.78 E-value=4.8e-17 Score=134.18 Aligned_cols=183 Identities=14% Similarity=0.051 Sum_probs=126.8
Q ss_pred eeeEEEeccccCCCCCCCCCCCceEEEeccccCCCceEEEEEecCCCchHHHHHHHHHhHHHHhCCCCchhhHHHHHHHH
Q 043371 42 ISHGYHVVEDQSCRGDLDVSDCDSVVVQREQLDEIELWFFGVFDAQVGDSVARFMQSHFFDRKLKPSQIRRKSKDTLKKA 121 (271)
Q Consensus 42 ~~~g~~s~~G~r~~~~~r~~neD~~~~~~~~~~~~~~~l~~V~DG~gG~~aa~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 121 (271)
+.+.....++..- .-|.+.+... +++..+|+|+||||+...|.+++..+...+.+....... +.+.
T Consensus 4 ~~~~~~~~p~~~~-------~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~----~~~~ 69 (193)
T smart00331 4 GLIAQYYEDATQV-------GGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGIS----LSQI 69 (193)
T ss_pred eEEEEEEcchHhc-------CccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCC----HHHH
Confidence 3455555555543 7898877643 245899999999997777777777776666543222122 4455
Q ss_pred HHHHHHHHHhhcCCCccCCCcee-EEEEE--eCCEEEEEEccCceEEEEe-CCeEEECCCCCCChhHHHHHHHhcCCCCC
Q 043371 122 YLGARAKARDAGKADEKWRAGSA-SVMVI--NGEKLVIANMGEYRAVVCR-DGVAHQISSGRQHTAKRHWSRKLFSGTKH 197 (271)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~gtT-~~~~i--~~~~l~vanvGDSr~~l~~-~g~~~~lt~dH~~~~e~~ri~~~~~gl~~ 197 (271)
+..+++.+..... ...++| +++.+ ..++++++|+||+|+|+++ ++...+.+.+..+. +..
T Consensus 70 l~~~n~~l~~~~~----~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~~------------lG~ 133 (193)
T smart00331 70 LERLNRAIYENGE----DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGAP------------LGL 133 (193)
T ss_pred HHHHHHHHHhcCC----CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCce------------eee
Confidence 6667777766522 356888 67766 6789999999999999998 66555555443222 110
Q ss_pred CccccceEEEEEecCCCcEEEEEeCCCCCCcChHHHHHHHHcc--CCHHHHHHHHHHHHH
Q 043371 198 SKGSELAVGAEKIDSDTEFVLIASTGIWEVMKNQEAVSLIRHI--GDAQEAAECLAKEAL 255 (271)
Q Consensus 198 ~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~~~ei~~~v~~~--~~~~~~a~~L~~~A~ 255 (271)
....+++.....+.++ +.|+|+||||||.++++++.+++++. .++++++++|.+...
T Consensus 134 ~~~~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 134 EPDVEVDVRELTLEPG-DLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred CCCCcceeEEEeeCCC-CEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 1112355666777766 89999999999999999999999873 578999998888764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.67 E-value=6.4e-15 Score=143.92 Aligned_cols=185 Identities=16% Similarity=0.142 Sum_probs=127.1
Q ss_pred CCCCCceEEEeccccCCCceEEEEEecCCC-chHHHHHHHHHhHHHHhCCCCchhhHHHHHHHHHHHHHHHHHhhcCCCc
Q 043371 59 DVSDCDSVVVQREQLDEIELWFFGVFDAQV-GDSVARFMQSHFFDRKLKPSQIRRKSKDTLKKAYLGARAKARDAGKADE 137 (271)
Q Consensus 59 r~~neD~~~~~~~~~~~~~~~l~~V~DG~g-G~~aa~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 137 (271)
++.+.|.+.+... +++..+++|+||+| |..|+ ..+....+.+.+.....-++ ..++..+|+.+.....
T Consensus 564 ~~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa-~~S~~~~~ll~~~~~~g~~~----~~ai~~lN~~L~~~~~--- 632 (764)
T TIGR02865 564 ELVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAA-QESSACVRLLEKFLESGFDR----EVAIKTVNSILSLRST--- 632 (764)
T ss_pred CcccCceEEEEEE---CCCEEEEEEEcccCCCHHHH-HHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCCC---
Confidence 4479999877642 25668899999999 44444 33333333222111000122 4566677777654422
Q ss_pred cCCCcee-EEEEEe--CCEEEEEEccCceEEEEeCCeEEECCCCCCCh-hHHHHHHHhcCCCCCCccccceEEEEEecCC
Q 043371 138 KWRAGSA-SVMVIN--GEKLVIANMGEYRAVVCRDGVAHQISSGRQHT-AKRHWSRKLFSGTKHSKGSELAVGAEKIDSD 213 (271)
Q Consensus 138 ~~~~gtT-~~~~i~--~~~l~vanvGDSr~~l~~~g~~~~lt~dH~~~-~e~~ri~~~~~gl~~~v~~~p~i~~~~l~~~ 213 (271)
....+| .+++++ .+++.++|+|+++.|+.+++.+.+++..+.|- .. -..+++....++.++
T Consensus 633 -~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lPlGil--------------~~~~~~~~~~~L~~G 697 (764)
T TIGR02865 633 -DEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLPIGIL--------------DEVDVELVRKKLKNG 697 (764)
T ss_pred -CCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCceeEec--------------cCCccceEEEEeCCC
Confidence 245788 666774 68999999999999999999999988755443 10 012355566677766
Q ss_pred CcEEEEEeCCCCCCcChHH-----HHHHHHc--cCCHHHHHHHHHHHHHhcC---CCCCeEEEEEEc
Q 043371 214 TEFVLIASTGIWEVMKNQE-----AVSLIRH--IGDAQEAAECLAKEALTRM---SRSNISCVVVRF 270 (271)
Q Consensus 214 ~~~liL~SDGlwd~l~~~e-----i~~~v~~--~~~~~~~a~~L~~~A~~~g---~~DNiTvivv~l 270 (271)
|+|+++|||+||..++.+ +.+++++ ..+|+++++.|++.+.... ..||+|++++++
T Consensus 698 -D~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 698 -DLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred -CEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 899999999999886533 6677765 4689999999999998653 489999999985
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.53 E-value=2.8e-12 Score=105.54 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=108.5
Q ss_pred CceEEEEEecCCC-chHHHHHHHHHhHHHHhCCCCchhhHHHHHHHHHHHHHHHHHhhcCCCccCCCcee-EEEEEe--C
Q 043371 76 IELWFFGVFDAQV-GDSVARFMQSHFFDRKLKPSQIRRKSKDTLKKAYLGARAKARDAGKADEKWRAGSA-SVMVIN--G 151 (271)
Q Consensus 76 ~~~~l~~V~DG~g-G~~aa~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~gtT-~~~~i~--~ 151 (271)
++..++.|+|+.| |-.++ +.+..+...+........+ ..+.+..+|+.+....... ...+| +++.+. .
T Consensus 2 ~~~~~~~v~D~~GhG~~aa-~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~---~~~~t~~~~~~d~~~ 73 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAA-LLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD---NRYATACYAIIDPET 73 (193)
T ss_dssp TTEEEEEEEEESSSSHHHH-HHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT---STTEEEEEEEEETTT
T ss_pred CCEEEEEEEEecCCCHHHH-HHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc---cccceEEEEEecccc
Confidence 5778999999999 44443 3333333322211110112 3455666777775555421 24666 555554 5
Q ss_pred CEEEEEEccCceEEEEeC--CeEEECCCCCCChhHHHHHHHhcCCCCCCccccceEEEEEecCCCcEEEEEeCCCCCCcC
Q 043371 152 EKLVIANMGEYRAVVCRD--GVAHQISSGRQHTAKRHWSRKLFSGTKHSKGSELAVGAEKIDSDTEFVLIASTGIWEVMK 229 (271)
Q Consensus 152 ~~l~vanvGDSr~~l~~~--g~~~~lt~dH~~~~e~~ri~~~~~gl~~~v~~~p~i~~~~l~~~~~~liL~SDGlwd~l~ 229 (271)
++++++|+|+++++++++ +....+.....|- .-.-...+....+.+.++ +.|+|+||||+|...
T Consensus 74 ~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~l-------------G~~~~~~~~~~~~~l~~g-d~l~l~TDGl~e~~~ 139 (193)
T PF07228_consen 74 GTLTYANAGHPPPLLLRPGGREIEQLESEGPPL-------------GIFEDIDYQEQEIQLEPG-DRLLLYTDGLFEALN 139 (193)
T ss_dssp TEEEEEEESSSEEEEEETTCTEEEEETCSSBBC-------------SSSCTTCEEEEEEE--TT-EEEEEECHHHCTTTC
T ss_pred eEEEEeCCCCCCEEEEeccccceeecccCccce-------------eeeccccccceEEEeccc-cEEEEeCCChhhccC
Confidence 789999999999999997 4555554433221 000012334445566655 999999999999884
Q ss_pred hH-------HHHHHHHc--cCCHHHHHHHHHHHHHhc---CCCCCeEEEEEEcC
Q 043371 230 NQ-------EAVSLIRH--IGDAQEAAECLAKEALTR---MSRSNISCVVVRFD 271 (271)
Q Consensus 230 ~~-------ei~~~v~~--~~~~~~~a~~L~~~A~~~---g~~DNiTvivv~l~ 271 (271)
.+ ++.+++.+ ..++++.++.|++.+... ...||+|++++++.
T Consensus 140 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 140 EDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred CccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 43 44566663 477999999999999873 47899999999873
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.64 E-value=5.1e-06 Score=75.41 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=115.9
Q ss_pred CCceEEEeccccCCCceEEEEEecCCC-chHHHHHHHHHhHHHHhCCCCc-hhhHHHHHHHHHHHHHHHHHhhcCCCccC
Q 043371 62 DCDSVVVQREQLDEIELWFFGVFDAQV-GDSVARFMQSHFFDRKLKPSQI-RRKSKDTLKKAYLGARAKARDAGKADEKW 139 (271)
Q Consensus 62 neD~~~~~~~~~~~~~~~l~~V~DG~g-G~~aa~~~~~~l~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 139 (271)
.-|.+-+... +.....++|.|..| |-.||-. .......+...... ..++.+ .+..+|..+..... .
T Consensus 162 GGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p~~----~l~~~n~~~~~~~~----~ 229 (367)
T COG2208 162 GGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESGPLDPAD----VLETLNRVLKQNLE----E 229 (367)
T ss_pred CCceEEEEEE---CCcEEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCHHH----HHHHHHHHHHhccc----C
Confidence 4577665532 23688999999999 6666544 22222222221111 123443 33445555555444 1
Q ss_pred CCcee-EEEEEe--CCEEEEEEccCceEEEEeCCe---EEECCCCCCChhHHHHHHHhcCCCCCCccccceE----EEEE
Q 043371 140 RAGSA-SVMVIN--GEKLVIANMGEYRAVVCRDGV---AHQISSGRQHTAKRHWSRKLFSGTKHSKGSELAV----GAEK 209 (271)
Q Consensus 140 ~~gtT-~~~~i~--~~~l~vanvGDSr~~l~~~g~---~~~lt~dH~~~~e~~ri~~~~~gl~~~v~~~p~i----~~~~ 209 (271)
..-+| ...+++ .+.+..+|+|---+++++.+. ...++. ...+++..|++ ....
T Consensus 230 ~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~-----------------~g~piG~~~~~~~~~~~~~ 292 (367)
T COG2208 230 DMFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTA-----------------LGLPIGLLPDYQYEVASLQ 292 (367)
T ss_pred CcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccC-----------------CCceeeecCCccchheeEE
Confidence 25567 555544 688999999999999998543 455554 44556654444 3455
Q ss_pred ecCCCcEEEEEeCCCCC-------CcChHHHHHHHHc--cCCHHHHHHHHHHHHHhc----CCCCCeEEEEEEcC
Q 043371 210 IDSDTEFVLIASTGIWE-------VMKNQEAVSLIRH--IGDAQEAAECLAKEALTR----MSRSNISCVVVRFD 271 (271)
Q Consensus 210 l~~~~~~liL~SDGlwd-------~l~~~ei~~~v~~--~~~~~~~a~~L~~~A~~~----g~~DNiTvivv~l~ 271 (271)
+.+ ++.+++.|||+.+ .+..+...+++.. ..+++++++.+.+..... .-.||+|++++++.
T Consensus 293 l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 293 LEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred ecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 556 6999999999999 5666777777763 568899998888877764 34788999999874
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=69.11 E-value=76 Score=27.81 Aligned_cols=98 Identities=9% Similarity=-0.051 Sum_probs=51.5
Q ss_pred CCceEEEeccccCCCceEEEEEe--cCCCchH--HHHHHHHHhHH-HHhCCC----CchhhHHHHHHHHHHHHHHHHHhh
Q 043371 62 DCDSVVVQREQLDEIELWFFGVF--DAQVGDS--VARFMQSHFFD-RKLKPS----QIRRKSKDTLKKAYLGARAKARDA 132 (271)
Q Consensus 62 neD~~~~~~~~~~~~~~~l~~V~--DG~gG~~--aa~~~~~~l~~-~~~~~~----~~~~~~~~~l~~~~~~~~~~l~~~ 132 (271)
.-|.+.+..- +++...|-++ -||||+. +|-. ...++. .+.... ....++ .+.+..+|+.+...
T Consensus 150 ~GD~~d~~~l---~~~~~~~~~~DvsGhg~hg~~aa~l-~~~~~~~~~~~~~~~~~~~~~~p----~~~l~~lN~~l~~~ 221 (303)
T PRK10693 150 PGLVLDIAAL---SDNDLAFYCLDVTRAGDNGVLAALL-LRALFNGLLQEQLAHQNQRLPEL----GALLKQVNHLLRQA 221 (303)
T ss_pred CccEEeeeec---CCCcEEEEEEecCCCCcccHHHHHH-HHHHHHHHHHHHhcccccccCCH----HHHHHHHHHHHHhc
Confidence 4566655432 1344444554 4777444 4433 334333 333311 100123 34556777777766
Q ss_pred cCCCccCCCcee-EEEEEe--CCEEEEEEccCceEEEEeCCeE
Q 043371 133 GKADEKWRAGSA-SVMVIN--GEKLVIANMGEYRAVVCRDGVA 172 (271)
Q Consensus 133 ~~~~~~~~~gtT-~~~~i~--~~~l~vanvGDSr~~l~~~g~~ 172 (271)
... .--| +..+++ .+++.++|.|-...++..++++
T Consensus 222 ~~~-----~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 222 NLP-----GQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred CCC-----ceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 331 1135 555554 4689999999999885445544
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=54.30 E-value=7.8 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=16.5
Q ss_pred cCCCcEEEEEeCCCCCCcChH
Q 043371 211 DSDTEFVLIASTGIWEVMKNQ 231 (271)
Q Consensus 211 ~~~~~~liL~SDGlwd~l~~~ 231 (271)
...+..+++++||+|=.+...
T Consensus 24 ~~~G~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 24 ERPGHRLLVASNGVFLEVRRP 44 (72)
T ss_pred ccCCcEEEEecCcEEEEEech
Confidence 445789999999999876553
No 22
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=38.75 E-value=63 Score=26.37 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCC-----------CcChHHHHHHHHcc----CCHHHHHHHHHHHHHhcC
Q 043371 214 TEFVLIASTGIWE-----------VMKNQEAVSLIRHI----GDAQEAAECLAKEALTRM 258 (271)
Q Consensus 214 ~~~liL~SDGlwd-----------~l~~~ei~~~v~~~----~~~~~~a~~L~~~A~~~g 258 (271)
||.++..|.|+|. +|.++..-+.+.+. .-|.+.|..|++--..+|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 4789999999985 55666666666552 458999999999887766
No 23
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=33.38 E-value=63 Score=21.09 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.3
Q ss_pred cChHHHHHHHHc-cCCHHHHHHHHHH
Q 043371 228 MKNQEAVSLIRH-IGDAQEAAECLAK 252 (271)
Q Consensus 228 l~~~ei~~~v~~-~~~~~~~a~~L~~ 252 (271)
-+++||..++.. ..+|.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 478899988877 6799999999986
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=31.62 E-value=87 Score=16.61 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.6
Q ss_pred EEEeCCEEEEEEccCceEEEE
Q 043371 147 MVINGEKLVIANMGEYRAVVC 167 (271)
Q Consensus 147 ~~i~~~~l~vanvGDSr~~l~ 167 (271)
++..++.+||+-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 344789999999999988654
No 25
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=28.81 E-value=69 Score=27.90 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=19.3
Q ss_pred CCceeEEEEEeCCEEEEEEccCc
Q 043371 140 RAGSASVMVINGEKLVIANMGEY 162 (271)
Q Consensus 140 ~~gtT~~~~i~~~~l~vanvGDS 162 (271)
.+|||++..+.++.+|..|+|-+
T Consensus 131 LSGCT~i~A~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 131 LSGCTMIYARKDNYFYAYHTGKS 153 (281)
T ss_dssp BSS-EEEEEEETTEEEEEEEEES
T ss_pred cCCCEEEEEEcCCeEEEEEcCCC
Confidence 47889888899999999999955
No 26
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=26.66 E-value=1.9e+02 Score=21.62 Aligned_cols=42 Identities=5% Similarity=0.027 Sum_probs=28.0
Q ss_pred CccccceEEEEEecCCCcEEEEEeCCCCC-------CcChHHHHHHHHc
Q 043371 198 SKGSELAVGAEKIDSDTEFVLIASTGIWE-------VMKNQEAVSLIRH 239 (271)
Q Consensus 198 ~v~~~p~i~~~~l~~~~~~liL~SDGlwd-------~l~~~ei~~~v~~ 239 (271)
++..+|+|+.......+-|.|.+..-.-+ .+++++|.-++.+
T Consensus 38 ~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q 86 (115)
T PRK06369 38 IVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQ 86 (115)
T ss_pred EEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHH
Confidence 46677888877776665677777766644 3677776655554
No 27
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.39 E-value=1.2e+02 Score=17.06 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.0
Q ss_pred CCEEEEEEccCceEEEEe
Q 043371 151 GEKLVIANMGEYRAVVCR 168 (271)
Q Consensus 151 ~~~l~vanvGDSr~~l~~ 168 (271)
++++|++|-|+..+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 567999999988888875
No 28
>PRK04897 heat shock protein HtpX; Provisional
Probab=21.00 E-value=1.1e+02 Score=26.89 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCCcChHHHHHHHHc
Q 043371 215 EFVLIASTGIWEVMKNQEAVSLIRH 239 (271)
Q Consensus 215 ~~liL~SDGlwd~l~~~ei~~~v~~ 239 (271)
+..|+.|+|+.+.++++|+..++..
T Consensus 119 ~~~v~vt~gLl~~l~~~El~aVlAH 143 (298)
T PRK04897 119 NAAVAVTTGLLAIMNREELEGVIGH 143 (298)
T ss_pred CcEEEeehHHHhhCCHHHHHHHHHH
Confidence 5689999999999999999888854
No 29
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=20.34 E-value=3.1e+02 Score=20.08 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=35.7
Q ss_pred EeCCCCCCcChHHHHHHHHc------cCCHHHHHHHHHHHHHhcCC-CCCeEEEEEE
Q 043371 220 ASTGIWEVMKNQEAVSLIRH------IGDAQEAAECLAKEALTRMS-RSNISCVVVR 269 (271)
Q Consensus 220 ~SDGlwd~l~~~ei~~~v~~------~~~~~~~a~~L~~~A~~~g~-~DNiTvivv~ 269 (271)
.||.+-+.++..++.+.+.. ....+.+|..|.+..+.... -+-+++-+-+
T Consensus 42 ~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~K 98 (116)
T TIGR00525 42 ESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSK 98 (116)
T ss_pred ccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEe
Confidence 47888888999888777754 24578888888888887643 5556655544
Done!