Query 043372
Match_columns 342
No_of_seqs 164 out of 2182
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 04:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.9E-37 8.5E-42 297.7 22.7 332 2-342 154-509 (968)
2 PLN00113 leucine-rich repeat r 100.0 4E-37 8.6E-42 297.6 22.5 330 2-342 107-462 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.2E-34 9.1E-39 241.8 3.9 326 3-338 116-445 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.1E-34 1.3E-38 240.8 3.9 326 13-342 79-426 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1.2E-31 2.6E-36 229.3 -6.9 323 4-342 47-372 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.7E-30 3.7E-35 222.3 -6.1 325 2-342 22-349 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 9.9E-30 2.1E-34 206.3 -10.3 316 3-328 151-548 (565)
8 PLN03210 Resistant to P. syrin 99.9 9.2E-24 2E-28 205.5 22.4 316 6-342 552-903 (1153)
9 PLN03210 Resistant to P. syrin 99.9 2.5E-22 5.5E-27 195.6 22.3 292 28-342 550-879 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 6.3E-26 1.4E-30 184.4 -6.4 275 10-296 181-541 (565)
11 KOG0618 Serine/threonine phosp 99.9 7E-26 1.5E-30 201.5 -6.8 331 2-342 58-486 (1081)
12 KOG4237 Extracellular matrix p 99.8 1.4E-23 3.1E-28 170.3 -6.8 265 3-271 60-358 (498)
13 KOG4237 Extracellular matrix p 99.8 3.2E-23 6.8E-28 168.3 -5.1 284 36-320 67-359 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 2.2E-19 4.8E-24 163.9 16.4 265 12-327 201-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 1.1E-18 2.3E-23 159.6 16.4 255 36-342 201-455 (788)
16 KOG0618 Serine/threonine phosp 99.8 1.3E-21 2.8E-26 174.6 -2.5 295 2-319 170-488 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-19 2.9E-24 154.4 -1.0 38 283-320 250-291 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 3.5E-17 7.7E-22 150.4 11.9 139 13-169 179-317 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-19 5.6E-24 152.6 -3.0 274 17-294 3-318 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 5.1E-17 1.1E-21 149.4 11.6 247 36-320 178-428 (754)
21 KOG0617 Ras suppressor protein 99.6 3.8E-18 8.3E-23 123.6 -4.2 154 10-168 31-185 (264)
22 KOG0617 Ras suppressor protein 99.6 5.7E-17 1.2E-21 117.6 -3.7 157 32-199 29-186 (264)
23 KOG1909 Ran GTPase-activating 99.4 9.9E-15 2.1E-19 117.6 -3.1 247 55-320 25-311 (382)
24 KOG3207 Beta-tubulin folding c 99.3 7.9E-14 1.7E-18 115.6 -1.7 190 9-198 118-313 (505)
25 KOG3207 Beta-tubulin folding c 99.3 9.8E-13 2.1E-17 109.3 0.5 208 107-320 119-339 (505)
26 KOG0532 Leucine-rich repeat (L 99.2 3E-13 6.5E-18 115.9 -3.0 181 113-333 79-259 (722)
27 KOG4658 Apoptotic ATPase [Sign 99.2 6.2E-12 1.4E-16 118.1 4.7 128 12-143 523-652 (889)
28 KOG1909 Ran GTPase-activating 99.2 1.1E-12 2.5E-17 105.9 -1.0 139 130-271 154-310 (382)
29 KOG4658 Apoptotic ATPase [Sign 99.2 2.4E-11 5.1E-16 114.2 5.5 250 10-266 543-801 (889)
30 PF14580 LRR_9: Leucine-rich r 99.1 2.7E-11 5.9E-16 91.6 3.5 123 35-162 18-146 (175)
31 PF14580 LRR_9: Leucine-rich r 99.1 9.4E-11 2E-15 88.6 4.6 131 56-195 15-149 (175)
32 PLN03150 hypothetical protein; 99.1 2.5E-10 5.3E-15 105.0 6.6 93 237-329 420-512 (623)
33 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 4E-15 71.7 3.5 60 12-71 1-60 (61)
34 PLN03150 hypothetical protein; 99.0 1.3E-09 2.8E-14 100.3 8.0 109 37-146 419-528 (623)
35 COG4886 Leucine-rich repeat (L 99.0 1.7E-09 3.6E-14 95.0 7.7 175 133-321 116-291 (394)
36 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.3E-14 68.2 4.3 61 36-96 1-61 (61)
37 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.3E-14 95.3 6.8 87 81-170 113-200 (394)
38 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.7E-15 91.3 1.2 132 186-325 284-416 (490)
39 KOG0532 Leucine-rich repeat (L 98.9 5E-11 1.1E-15 102.6 -3.0 160 3-170 89-248 (722)
40 KOG1259 Nischarin, modulator o 98.9 4.5E-10 9.7E-15 89.5 1.2 128 156-296 284-412 (490)
41 KOG4341 F-box protein containi 98.9 4.5E-11 9.7E-16 99.1 -4.9 35 283-317 401-436 (483)
42 KOG2120 SCF ubiquitin ligase, 98.9 1.3E-11 2.9E-16 97.8 -8.0 196 109-310 185-390 (419)
43 KOG4341 F-box protein containi 98.7 1.6E-10 3.4E-15 95.9 -6.6 298 13-314 139-459 (483)
44 COG5238 RNA1 Ran GTPase-activa 98.7 1.6E-09 3.4E-14 85.2 -2.1 247 56-320 26-316 (388)
45 KOG2982 Uncharacterized conser 98.6 1.2E-08 2.6E-13 81.4 1.7 107 36-143 45-156 (418)
46 KOG2120 SCF ubiquitin ligase, 98.6 8.1E-10 1.8E-14 87.9 -6.3 154 13-166 186-348 (419)
47 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.6E-13 88.9 -1.2 248 57-324 69-322 (414)
48 KOG0531 Protein phosphatase 1, 98.5 3.4E-08 7.4E-13 87.0 0.5 243 34-297 70-319 (414)
49 KOG2982 Uncharacterized conser 98.4 3.9E-08 8.5E-13 78.5 -0.5 211 82-298 43-264 (418)
50 KOG1859 Leucine-rich repeat pr 98.3 8.6E-09 1.9E-13 91.7 -7.3 105 211-320 187-292 (1096)
51 KOG3665 ZYG-1-like serine/thre 98.1 6.1E-07 1.3E-11 82.9 0.7 141 184-326 120-269 (699)
52 PF13306 LRR_5: Leucine rich r 98.1 1.2E-05 2.6E-10 58.6 7.0 105 7-117 7-111 (129)
53 PF12799 LRR_4: Leucine Rich r 98.1 3.8E-06 8.2E-11 47.8 3.4 37 283-320 1-37 (44)
54 KOG4579 Leucine-rich repeat (L 98.1 1.3E-07 2.8E-12 66.8 -3.4 111 212-326 28-141 (177)
55 COG5238 RNA1 Ran GTPase-activa 98.0 2.2E-06 4.8E-11 67.9 1.9 190 132-321 29-256 (388)
56 KOG1859 Leucine-rich repeat pr 98.0 1.5E-07 3.3E-12 84.0 -5.1 159 7-172 104-295 (1096)
57 KOG4579 Leucine-rich repeat (L 98.0 1.3E-07 2.7E-12 66.8 -4.5 139 187-330 28-169 (177)
58 KOG1644 U2-associated snRNP A' 98.0 1.3E-05 2.8E-10 60.8 5.5 104 60-166 42-150 (233)
59 KOG1644 U2-associated snRNP A' 98.0 1.3E-05 2.8E-10 60.8 5.2 126 63-195 22-149 (233)
60 PF12799 LRR_4: Leucine Rich r 98.0 8.4E-06 1.8E-10 46.3 3.1 36 13-49 2-37 (44)
61 PF13306 LRR_5: Leucine rich r 97.9 2.8E-05 6.2E-10 56.5 6.2 106 30-141 6-111 (129)
62 PRK15386 type III secretion pr 97.9 0.00018 4E-09 61.8 11.0 57 56-119 48-104 (426)
63 KOG3665 ZYG-1-like serine/thre 97.8 3.5E-06 7.7E-11 78.0 0.1 13 211-223 250-262 (699)
64 PRK15386 type III secretion pr 97.8 0.00014 3E-09 62.5 8.8 136 9-166 49-187 (426)
65 KOG1947 Leucine rich repeat pr 97.4 7.7E-06 1.7E-10 74.0 -4.1 131 34-164 186-329 (482)
66 KOG1947 Leucine rich repeat pr 97.4 2.4E-05 5.2E-10 70.8 -1.4 111 108-223 187-307 (482)
67 KOG2739 Leucine-rich acidic nu 97.4 9.7E-05 2.1E-09 58.5 2.1 84 56-141 61-151 (260)
68 KOG2739 Leucine-rich acidic nu 97.1 0.00038 8.2E-09 55.2 2.6 85 234-320 42-129 (260)
69 KOG2123 Uncharacterized conser 97.0 1.7E-05 3.7E-10 63.2 -5.8 101 11-115 18-123 (388)
70 KOG2123 Uncharacterized conser 96.7 4E-05 8.7E-10 61.2 -5.4 80 61-145 20-100 (388)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0086 1.9E-07 28.1 1.3 18 309-327 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 94.8 0.027 5.9E-07 26.4 1.9 12 261-272 2-13 (22)
73 KOG3864 Uncharacterized conser 94.5 0.0059 1.3E-07 46.8 -1.2 84 236-319 102-188 (221)
74 KOG3864 Uncharacterized conser 94.4 0.005 1.1E-07 47.1 -1.7 83 36-119 101-186 (221)
75 PF13504 LRR_7: Leucine rich r 93.8 0.052 1.1E-06 23.6 1.5 13 308-320 2-14 (17)
76 KOG4308 LRR-containing protein 93.0 0.00048 1E-08 61.3 -11.0 183 135-320 89-303 (478)
77 KOG4308 LRR-containing protein 92.4 0.00039 8.4E-09 61.9 -12.4 37 86-122 89-128 (478)
78 smart00369 LRR_TYP Leucine-ric 90.2 0.25 5.3E-06 24.1 1.7 15 37-51 3-17 (26)
79 smart00370 LRR Leucine-rich re 90.2 0.25 5.3E-06 24.1 1.7 15 37-51 3-17 (26)
80 KOG0473 Leucine-rich repeat pr 89.9 0.011 2.4E-07 46.4 -5.0 83 10-95 40-122 (326)
81 PF13516 LRR_6: Leucine Rich r 89.9 0.1 2.2E-06 24.9 0.1 15 307-321 2-16 (24)
82 KOG0473 Leucine-rich repeat pr 81.2 0.027 5.8E-07 44.4 -6.7 91 230-323 37-127 (326)
83 smart00367 LRR_CC Leucine-rich 71.9 2.7 5.8E-05 20.3 1.2 14 306-319 1-14 (26)
84 smart00364 LRR_BAC Leucine-ric 71.4 3 6.4E-05 20.4 1.2 18 307-325 2-19 (26)
85 smart00368 LRR_RI Leucine rich 68.8 1.6 3.4E-05 21.8 -0.0 14 12-25 2-15 (28)
86 smart00365 LRR_SD22 Leucine-ri 61.7 8 0.00017 18.9 1.7 14 307-320 2-15 (26)
87 KOG3763 mRNA export factor TAP 57.4 4.9 0.00011 36.4 0.9 65 232-297 215-284 (585)
88 KOG3763 mRNA export factor TAP 55.3 5.7 0.00012 35.9 1.0 11 60-70 244-254 (585)
89 KOG4242 Predicted myosin-I-bin 50.2 1E+02 0.0023 27.8 7.6 108 211-318 354-479 (553)
90 PF05725 FNIP: FNIP Repeat; I 27.8 1.2E+02 0.0025 16.8 3.4 8 211-218 34-41 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.9e-37 Score=297.66 Aligned_cols=332 Identities=38% Similarity=0.615 Sum_probs=178.0
Q ss_pred CCCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCcccc
Q 043372 2 GKVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIY 81 (342)
Q Consensus 2 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 81 (342)
|.+|..++++++||+|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 34555555566666666665555555555555556666666666555555555555556666666665555555555555
Q ss_pred CCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccE
Q 043372 82 NLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLRE 160 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~ 160 (342)
.+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+....+. +.++++|+.
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred cCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 566666666665555544554443 455566666655555555555555555666666655555433332 455556666
Q ss_pred EEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEE
Q 043372 161 VSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELL 240 (342)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 240 (342)
+++++|.+.. ..+..+..+++|+.+++++|.+....+..+... ++|+.|++++|++.+..+..++.+++|+.|
T Consensus 313 L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 313 LHLFSNNFTG------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred EECCCCccCC------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 6665555443 223334455566666666655554445444444 455556665555544444444444555555
Q ss_pred EcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCC--------------
Q 043372 241 DLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKC-------------- 306 (342)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-------------- 306 (342)
++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..++.|+.|++++|.+.+.++..+..+
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 555555544444444555555555555555554444444444455555555444444333333333
Q ss_pred ---------CCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 307 ---------QNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 307 ---------~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
++|+.|++++|.+.+..|..+..++++ ++|++++|
T Consensus 466 ~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N 509 (968)
T PLN00113 466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSEL-MQLKLSEN 509 (968)
T ss_pred eecCcccccccceEEECcCCccCCccChhhhhhhcc-CEEECcCC
Confidence 344445555555555555555555555 55665554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-37 Score=297.65 Aligned_cols=330 Identities=33% Similarity=0.535 Sum_probs=195.0
Q ss_pred CCCCcccC-CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccc
Q 043372 2 GKVPGKLG-SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSI 80 (342)
Q Consensus 2 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 80 (342)
|.+|..+. ++++||+|++++|.+++..+. ..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 56776553 778888888887777654443 345677777777777666666666677777777777776666666666
Q ss_pred cCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCC-CccccCccc
Q 043372 81 YNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVP-SFENLHKLR 159 (342)
Q Consensus 81 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 159 (342)
..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+....+ .+.++++|+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 6777777777777666655565554 46666667666666665566666666666666666666554333 256666666
Q ss_pred EEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccc-------------
Q 043372 160 EVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGN------------- 226 (342)
Q Consensus 160 ~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------- 226 (342)
.|++++|.+.. ..+..+..+++|+.|++++|.+....+..+..+ ++|+.|++++|.+.+.
T Consensus 264 ~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 264 YLFLYQNKLSG------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred EEECcCCeeec------cCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 66666665543 222334444555555555554444444444333 3455555554444444
Q ss_pred -----------cCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccc
Q 043372 227 -----------IPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLL 295 (342)
Q Consensus 227 -----------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 295 (342)
.+..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+++|++|++++|.+
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 444444444455555554444444444444444555555555555445555555566666666666666
Q ss_pred ccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 296 EGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 296 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
.+.+|..+..+++|+.+++++|.+.+.+|..+..+++| ++|++++|
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~n 462 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL-QMLSLARN 462 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC-cEEECcCc
Confidence 65566666666666666666666666666555566666 66666554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-34 Score=241.76 Aligned_cols=326 Identities=20% Similarity=0.213 Sum_probs=244.5
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
.||....-..+++.|++..|.+.....+.++.++.||+|||+.|.+.++.-..|..-.++++|+|++|.|+......|..
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence 35555555566777777777776666667777788888888888877666666777778888888888888777777888
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREV 161 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l 161 (342)
+.+|-+|.++.|+++ ++|...|..+++|+.|++..|.+.-...-.|..+++|+.+.+..|++...... |..+.+++++
T Consensus 196 lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred cchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 888888888888887 88877776788888888888877633345677788888888888877766555 7778888888
Q ss_pred EcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEE
Q 043372 162 SISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLD 241 (342)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 241 (342)
++..|.+..+. -..+.+++.|+.|+++.|.+...-...+... ++|++|++++|.+....+..+..+..|++|+
T Consensus 275 ~L~~N~l~~vn------~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 275 NLETNRLQAVN------EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ecccchhhhhh------cccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 88888776533 2356778888888888887765444444433 6788888888888766677777888888888
Q ss_pred cCCCcccccCCcccccccCcceEEccCCeeeeec---cccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCc
Q 043372 242 LGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEI---PSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNN 318 (342)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~ 318 (342)
++.|.+.+.....|..+.+|+.|++++|.+...+ ...|..+++|+.|++.+|++..+....|..+++|+.|++.+|+
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 8888888777777888888888888888876433 3456678888888888888875556778888888888888888
Q ss_pred CccccchhhcCccccceeec
Q 043372 319 LSGTIPTEVIGLSSLSIYLD 338 (342)
Q Consensus 319 ~~~~~~~~~~~l~~l~~~l~ 338 (342)
+...-|++|..+ .| +.|.
T Consensus 428 iaSIq~nAFe~m-~L-k~Lv 445 (873)
T KOG4194|consen 428 IASIQPNAFEPM-EL-KELV 445 (873)
T ss_pred ceeecccccccc-hh-hhhh
Confidence 887777777766 55 4443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-34 Score=240.78 Aligned_cols=326 Identities=22% Similarity=0.226 Sum_probs=223.0
Q ss_pred cccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCc
Q 043372 13 KLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFP 92 (342)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~ 92 (342)
.-+.|++++|.+.......|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|..+..+.++.++.|+.+|++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4467888888888777777888888888888888887 455544445668888888888887777788888888888888
Q ss_pred CCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCC
Q 043372 93 VNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNG 171 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~ 171 (342)
.|.+. .++..-+-.-.++++|+++.|.++....+.|..+.+|..|.++.|.++..+.. |+.+++|+.|++..|.+..+
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88877 66665554456788888888877766666777777777777777777766665 66677777777777766543
Q ss_pred CCCchhh------------------hhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccC
Q 043372 172 EKDDLEF------------------VNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRN 233 (342)
Q Consensus 172 ~~~~~~~------------------~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 233 (342)
+.-++.- -..+..+.+++++++..|.+...-..++..+ +.|+.|++++|.|...-.+....
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchhhh
Confidence 2211100 0123344555555555555554444444444 56666666666665444555555
Q ss_pred cCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccC---ccccCCCCCc
Q 043372 234 LVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIP---SSLGKCQNLI 310 (342)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~ 310 (342)
++.|++|++++|.+....+..+..+..|+.|++++|++.......|..+++|++|+++.|.+...+. ..|..+++|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 6666666666666665555566666666666666666654444556677788888888887764443 3455678888
Q ss_pred EEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 311 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 311 ~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
.|.+.||++....-.++.+++.| +.|||-+|
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~L-E~LdL~~N 426 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEAL-EHLDLGDN 426 (873)
T ss_pred heeecCceeeecchhhhccCccc-ceecCCCC
Confidence 88888888885444688888888 88888776
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.2e-31 Score=229.27 Aligned_cols=323 Identities=28% Similarity=0.434 Sum_probs=184.9
Q ss_pred CCcccCCCCcccEEEeeccccccCccccccCCCCCceeecccccccc-CCchhhcCccCccEEEecccccccccCccccC
Q 043372 4 VPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVG-RIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 4 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
+|+.++.+.+|+.|.++.|++. .....+..++.|+++.+.+|++.. =+|..+.++.-|..|+|++|++. ..|..+..
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~ 124 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY 124 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh
Confidence 4555555555555555555544 222334455555555555555431 13334555555555555555555 45555555
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREV 161 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l 161 (342)
-.++-.|+++.|++. ++|..++.++..|-.|++++|.+. .+|..+.++..|+.|.+++|++...--. +-.+++|+.|
T Consensus 125 AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 555555566655555 555555555555555556555555 3444455555555665555554432111 3333444444
Q ss_pred EcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEE
Q 043372 162 SISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLD 241 (342)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 241 (342)
.+++..-+- ..++.++..+.+|+.++++.|++. ..|+.+..+ ++|+.|++++|.++ .+......-.+|++|+
T Consensus 203 hms~TqRTl-----~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~it-eL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 203 HMSNTQRTL-----DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKIT-ELNMTEGEWENLETLN 274 (1255)
T ss_pred hcccccchh-----hcCCCchhhhhhhhhccccccCCC-cchHHHhhh-hhhheeccCcCcee-eeeccHHHHhhhhhhc
Confidence 444432211 133445555555666666655543 234444444 45666666666554 2222233334566666
Q ss_pred cCCCcccccCCcccccccCcceEEccCCeeee-eccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCc
Q 043372 242 LGDNQFIGRIPESIGYLQKLQGLWLNGNKFLG-EIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
++.|.++ .+|.++..+++|+.|...+|.+.- -+|..++.+-.|+.+..++|.+. ..|+.+.+|+.|+.|.++.|.+.
T Consensus 275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 6666655 556666666666666666665542 25556666666777777777766 67888888889999999999888
Q ss_pred cccchhhcCccccceeeccCCC
Q 043372 321 GTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 321 ~~~~~~~~~l~~l~~~l~l~~n 342 (342)
++|++|.-++.+ ..||++.|
T Consensus 353 -TLPeaIHlL~~l-~vLDlreN 372 (1255)
T KOG0444|consen 353 -TLPEAIHLLPDL-KVLDLREN 372 (1255)
T ss_pred -echhhhhhcCCc-ceeeccCC
Confidence 789998888888 88888876
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.7e-30 Score=222.26 Aligned_cols=325 Identities=27% Similarity=0.412 Sum_probs=277.8
Q ss_pred CCCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEeccccccc-ccCccc
Q 043372 2 GKVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSG-EIPFSI 80 (342)
Q Consensus 2 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~ 80 (342)
|.+|.....|+.++-|.+....+. ..|+.++++.+|+.|++++|++..+ -..+..++.|+.+.+.+|++.. -+|..+
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchh
Confidence 578888889999999999888776 6788899999999999999998743 3457889999999999998764 357788
Q ss_pred cCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccE
Q 043372 81 YNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLRE 160 (342)
Q Consensus 81 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 160 (342)
..+..|.+++++.|++. ..|..+- ...++-.|++++|++..+....|.++..|-.|++++|.+...+|..+.+..|+.
T Consensus 100 F~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 89999999999999998 8888776 578888999999999855445567888888999999999988888999999999
Q ss_pred EEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCC-CCCCccchhccCCCccEEEecCcccccccCccccCcCCCCE
Q 043372 161 VSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNC-GGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLEL 239 (342)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 239 (342)
|.+++|++.- ..+..+..+++|++|.+++.+. ...+|.++..+ .+|..++++.|++. ..|+.+..+++|+.
T Consensus 178 L~Ls~NPL~h------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 178 LKLSNNPLNH------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLRNLRR 249 (1255)
T ss_pred hhcCCChhhH------HHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCC-cchHHHhhhhhhhe
Confidence 9999998764 3455677778889999998754 35577777777 78999999999987 78899999999999
Q ss_pred EEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccccc-ccCccccCCCCCcEEEcCCCc
Q 043372 240 LDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEG-SIPSSLGKCQNLISLNLSNNN 318 (342)
Q Consensus 240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~~~ 318 (342)
|++++|.++ .+......+.+|++|+++.|++. .+|..+..++.|++|.+.+|++.- -+|..++.+.+|+.+...+|.
T Consensus 250 LNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 250 LNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred eccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 999999998 44445667789999999999998 899999999999999999998762 489999999999999999999
Q ss_pred CccccchhhcCccccceeeccCCC
Q 043372 319 LSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 319 ~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+. ..|+.++.|+.| +.|.|+.|
T Consensus 328 LE-lVPEglcRC~kL-~kL~L~~N 349 (1255)
T KOG0444|consen 328 LE-LVPEGLCRCVKL-QKLKLDHN 349 (1255)
T ss_pred cc-cCchhhhhhHHH-HHhccccc
Confidence 98 899999999999 99998876
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=9.9e-30 Score=206.34 Aligned_cols=316 Identities=26% Similarity=0.377 Sum_probs=212.1
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|+.+.++.++.++++.+|.++...+... +++.|+.++...|-++ ..|..++.+.+|..|++.+|+|. .+| .|.+
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~g 226 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPG 226 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCc
Confidence 567777788888888888888774444433 4788888888888776 55666888888888888888887 666 7888
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVS 162 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 162 (342)
+..|+++.++.|.+. .+|..+..+++++..|++++|++. ..|+.+..+.+|..|++++|.++..+..++++ +|+.+-
T Consensus 227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence 888899988888887 888888888999999999999998 78888888999999999999999888889988 999999
Q ss_pred cccCCCCCCCC-----Cchh------------------------------hhhhhccCCcccEEEeccCCCCCCCccchh
Q 043372 163 ISQNPLGNGEK-----DDLE------------------------------FVNSLVNTSRLELLEISDTNCGGMLPEAVG 207 (342)
Q Consensus 163 l~~~~~~~~~~-----~~~~------------------------------~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 207 (342)
+.+|++.+... .+.+ .....+...+.+.++.++-+.+.+-.++|.
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe 383 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE 383 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence 88886432100 0000 011112222333444443333322111111
Q ss_pred cc-CCCccEEEecCccc-----------------------ccccCccccCcCCCCEEEcCCCcccccCCcccccccCcce
Q 043372 208 NL-STRLRKLSVGNNQL-----------------------FGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQG 263 (342)
Q Consensus 208 ~~-~~~L~~L~l~~~~~-----------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 263 (342)
.. ..-++..++++|++ .+..+..++.+++|..|++++|.+. ..|..+..+..|+.
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQT 462 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhhe
Confidence 10 01133333333322 1245556666777888888877665 56666677777778
Q ss_pred EEccCCeee-----------------------eeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCc
Q 043372 264 LWLNGNKFL-----------------------GEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 264 L~l~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
++++.|++. ...+..+.++.+|.+||+.+|.+. .+|..+++|.+|++|+++||++.
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 887777663 122223556677777777777776 67777777777777777777777
Q ss_pred cccchhhc
Q 043372 321 GTIPTEVI 328 (342)
Q Consensus 321 ~~~~~~~~ 328 (342)
..+.++.
T Consensus 542 -~Pr~~iL 548 (565)
T KOG0472|consen 542 -QPRHQIL 548 (565)
T ss_pred -CCHHHHh
Confidence 3333443
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=9.2e-24 Score=205.53 Aligned_cols=316 Identities=21% Similarity=0.283 Sum_probs=214.2
Q ss_pred cccCCCCcccEEEeeccccc------cCccccccCC-CCCceeeccccccccCCchhhcCccCccEEEecccccccccCc
Q 043372 6 GKLGSIPKLRILTVHANYLS------GEIPSSFGNL-SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPF 78 (342)
Q Consensus 6 ~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 78 (342)
..|.+|++|+.|.+..+... ...+..+..+ ++|+.|.+.++.+.. .|..| ...+|+.|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-cccc
Confidence 45778888888888654321 1234445554 358888888877663 34444 4578888888888877 5667
Q ss_pred cccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcc
Q 043372 79 SIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKL 158 (342)
Q Consensus 79 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 158 (342)
.+..+++|+.++++++.....+|. +. .+++|++|++++|.....+|..+.++++|+.|++++|......+...++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 777888888888877654435664 22 4788888888877655567777777888888888876544433333366777
Q ss_pred cEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCcc-----------------------------chhcc
Q 043372 159 REVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPE-----------------------------AVGNL 209 (342)
Q Consensus 159 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~-----------------------------~~~~~ 209 (342)
+.|++++|.... .++. ..++|+.|+++++.+.. ++. .....
T Consensus 707 ~~L~Lsgc~~L~------~~p~---~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 707 YRLNLSGCSRLK------SFPD---ISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CEEeCCCCCCcc------cccc---ccCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhc
Confidence 777777764322 1110 12334444444443221 111 11122
Q ss_pred CCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEe
Q 043372 210 STRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILD 289 (342)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 289 (342)
+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|... .+++|+.|++++|.....+|.. ..+|+.|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence 3578888888887665677888888999999998886554666554 6788999999988766555543 35788999
Q ss_pred cCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 290 FSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 290 l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+++|.+. .+|..+..+++|+.|++.+|+....+|..+..++.+ +++++++|
T Consensus 853 Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L-~~L~l~~C 903 (1153)
T PLN03210 853 LSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL-ETVDFSDC 903 (1153)
T ss_pred CCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCC-CeeecCCC
Confidence 9998887 688888889999999999987666788888888888 88888775
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.5e-22 Score=195.57 Aligned_cols=292 Identities=23% Similarity=0.302 Sum_probs=216.7
Q ss_pred ccccccCCCCCceeecccccc------ccCCchhhcCcc-CccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCC
Q 043372 28 IPSSFGNLSSLEVLSATANQF------VGRIPETLRDIK-RMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSF 100 (342)
Q Consensus 28 ~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 100 (342)
...+|.++++|+.|.+..+.. ....|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 456788899999999976532 223455566654 6999999999887 677766 5689999999999987 77
Q ss_pred CccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcC-CCCCccccCcccEEEcccCCCCCCCCCchhhh
Q 043372 101 PSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSG-KVPSFENLHKLREVSISQNPLGNGEKDDLEFV 179 (342)
Q Consensus 101 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 179 (342)
+.... .+++|+.|+++++.....+|. +..+++|+.|++.+|.... .+..+..+++|+.|++++|.... .++
T Consensus 627 ~~~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp 698 (1153)
T PLN03210 627 WDGVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILP 698 (1153)
T ss_pred ccccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccC
Confidence 77665 699999999998765545554 7789999999999986443 44458899999999999875432 122
Q ss_pred hhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccc----------------------------
Q 043372 180 NSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGL---------------------------- 231 (342)
Q Consensus 180 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------------------- 231 (342)
.. ..+++|+.|++++|.....++. .+++|+.|+++++.+. .+|..+
T Consensus 699 ~~-i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 699 TG-INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred Cc-CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchh
Confidence 22 2678999999999865544443 2367889999888765 333221
Q ss_pred --cCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCC
Q 043372 232 --RNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNL 309 (342)
Q Consensus 232 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 309 (342)
...++|+.|++++|......|..+..+++|+.|++++|...+.+|... ++++|+.|++++|.....+|.. .++|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cccc
Confidence 112467777887776666677778888888888888886665666655 6788888888887654444433 3578
Q ss_pred cEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 310 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+.|++++|.+. .+|.++..+++| ++|++++|
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L-~~L~L~~C 879 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNL-SFLDMNGC 879 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCC-CEEECCCC
Confidence 89999999998 689999999999 99999875
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=6.3e-26 Score=184.40 Aligned_cols=275 Identities=27% Similarity=0.435 Sum_probs=151.9
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCc-cccCCCCCCE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPF-SIYNLSSLSV 88 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~l~~L~~ 88 (342)
+|+.|+.++...|.++ ..|..++.+..|+.|++..|.+.. .| .|++|..|+++.++.|.|. .+|. ..+.++++.+
T Consensus 181 ~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 3666666666665554 445556666666666666666552 23 4666666666666666665 4443 3335666666
Q ss_pred EeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCC--------------------
Q 043372 89 FDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGK-------------------- 148 (342)
Q Consensus 89 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------- 148 (342)
||+++|+++ .+|..+. -+.+|.+|++++|.+. ..|.++.++ .|+.|-+.||++.++
T Consensus 257 LDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred eeccccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence 666666666 5665555 2556666666666655 455555555 556665555554110
Q ss_pred ----------------------CCCccccCcccEEEcccCCCCCCCCCchh-----------------------------
Q 043372 149 ----------------------VPSFENLHKLREVSISQNPLGNGEKDDLE----------------------------- 177 (342)
Q Consensus 149 ----------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----------------------------- 177 (342)
.+......+.+.+.+++-.++.++.+.|.
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lke 412 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKE 412 (565)
T ss_pred ccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHH
Confidence 00011222333344443333333222111
Q ss_pred --------------hhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcC
Q 043372 178 --------------FVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLG 243 (342)
Q Consensus 178 --------------~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 243 (342)
....+..+++|..++++++... .+|..+..+ ..|+.++++.|.|. ..|........++.+-.+
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLAS 489 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhh-hhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence 1122333344444444443332 233333333 23445555544443 344444444444444444
Q ss_pred CCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccc
Q 043372 244 DNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLE 296 (342)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 296 (342)
+|.+....+..+..+.+|..|++.+|.+. .+|..++++.+|++|++.+|++.
T Consensus 490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 45544444445778899999999999987 88999999999999999999986
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=7e-26 Score=201.49 Aligned_cols=331 Identities=25% Similarity=0.335 Sum_probs=214.6
Q ss_pred CCCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCcccc
Q 043372 2 GKVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIY 81 (342)
Q Consensus 2 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 81 (342)
|++|..+..+.+|+.|+++.|.+. ..+.+..++.+|+++.|..|..+ ..|..+..+++|++|+++.|.+. ..|..+.
T Consensus 58 ~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~ 134 (1081)
T KOG0618|consen 58 SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE 134 (1081)
T ss_pred ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH
Confidence 456666666666666666666655 34455666667777777666655 45566666777777777766554 2222211
Q ss_pred CCCC-------------------CCE----------------------EeCcCCCCCCCCCccc----------------
Q 043372 82 NLSS-------------------LSV----------------------FDFPVNQLQGSFPSDL---------------- 104 (342)
Q Consensus 82 ~l~~-------------------L~~----------------------l~l~~~~~~~~~~~~~---------------- 104 (342)
.+.. .+. +++++|.+. ......
T Consensus 135 ~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~ 213 (1081)
T KOG0618|consen 135 VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLANLEVLHCERNQLSE 213 (1081)
T ss_pred hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhccchhhhhhhhcccce
Confidence 1111 111 333333221 000000
Q ss_pred -cCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCc--------
Q 043372 105 -GFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDD-------- 175 (342)
Q Consensus 105 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-------- 175 (342)
-..-++|+.|+..+|.+....+ .....+++.++++.+.+...+..+..+.+|+.++...|.+.......
T Consensus 214 l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 214 LEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVS 291 (1081)
T ss_pred EEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence 0001223333333333321111 12235788888888888777766888888999988888764322111
Q ss_pred --------hhhhhhhccCCcccEEEeccCCCCCCCccchh------------------------ccCCCccEEEecCccc
Q 043372 176 --------LEFVNSLVNTSRLELLEISDTNCGGMLPEAVG------------------------NLSTRLRKLSVGNNQL 223 (342)
Q Consensus 176 --------~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~------------------------~~~~~L~~L~l~~~~~ 223 (342)
..++...+....|++|++..+.+...-...+. ...+.|+.|++.+|.+
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 12333455678888888888776532111000 0013567778888888
Q ss_pred ccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccc
Q 043372 224 FGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSL 303 (342)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 303 (342)
.+.....+.++++|+.|++++|.+.......+.++..|++|++|+|.+. .+|..+.+++.|++|...+|.+. ..| .+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 8777778888999999999999988555567888999999999999988 88899999999999999999998 777 88
Q ss_pred cCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 304 GKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 304 ~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
.+++.|+.+|++.|.++..........+.| +|||++||
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L-kyLdlSGN 486 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNL-KYLDLSGN 486 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCccc-ceeeccCC
Confidence 899999999999999986554444555788 99999998
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-23 Score=170.34 Aligned_cols=265 Identities=21% Similarity=0.231 Sum_probs=176.4
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecc-cccccccCcccc
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGI-NKLSGEIPFSIY 81 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~ 81 (342)
++|..+- +.-..+.+..|.++.+.+.+|+.+++|++|+|++|.|+.+-|++|.+++.|-.|.+.+ |+|+......|.
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 3454444 5667788888888877888888888888888888888888888888888887777666 778855556778
Q ss_pred CCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCC------CCC----
Q 043372 82 NLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGK------VPS---- 151 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~---- 151 (342)
.+..|+.|.+.-|++. .+....+.++++|..|.+.+|.+......+|..+..++.+.+..|.+... ...
T Consensus 138 gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 8888888888777776 66666666788888888888877755555677777777777665552110 000
Q ss_pred ---ccccCcccEEEcccCCCC--------------------CCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhc
Q 043372 152 ---FENLHKLREVSISQNPLG--------------------NGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGN 208 (342)
Q Consensus 152 ---~~~~~~L~~l~l~~~~~~--------------------~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 208 (342)
++...-..-..+....+. .-..+...-...++.+++|+++++++|.+...-..++..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 111110000000000000 000000122335778888888888888777655555555
Q ss_pred cCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCee
Q 043372 209 LSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKF 271 (342)
Q Consensus 209 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (342)
. ..+++|.+..|++.......|.++..|+.|++.+|+++...|.+|.....|.+|++-.|.+
T Consensus 297 ~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 297 A-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred h-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 5 6788888888887655566777788888888888888877777777777777777765544
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=3.2e-23 Score=168.33 Aligned_cols=284 Identities=17% Similarity=0.141 Sum_probs=204.6
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcC-CCCCCCCCccccCCCCCCcEE
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPV-NQLQGSFPSDLGFTLPNLELL 114 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~~L~~L 114 (342)
+.-..+.|..|+|+.+.+.+|+.+++|+.|+|++|.|+.+.|.+|++++.|-.+-+.+ |+++ .+|+..+..+..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999988777655 8998 9999999899999999
Q ss_pred EccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCC---c---hhhhhhhccCCc
Q 043372 115 NVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKD---D---LEFVNSLVNTSR 187 (342)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~---~---~~~~~~l~~~~~ 187 (342)
.+.-+++.....+.|..++++..|.+.+|.+..+... +..+..++.+.+..+.+...=.- + ...+...+...-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 9998888877778899999999999999998877764 88888999998887764321000 0 000000111111
Q ss_pred ccEEEeccCCCCCCCccchhccCCCccEEEecCcccccc-cCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEc
Q 043372 188 LELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGN-IPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWL 266 (342)
Q Consensus 188 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 266 (342)
.....+....+...-...+......+..-..+.+..... ....|..+++|++|++++|.++...+.+|.+..++++|.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 111111111111111111110001111111122222112 2335677889999999999988888888888889999999
Q ss_pred cCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCc
Q 043372 267 NGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
..|++...-..+|.++.+|+.|++++|+++-..|..|..+.+|.+|++-.||+-
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 998887666677888888999999999988777888888888999988888775
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=2.2e-19 Score=163.94 Aligned_cols=265 Identities=23% Similarity=0.294 Sum_probs=195.0
Q ss_pred CcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeC
Q 043372 12 PKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDF 91 (342)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l 91 (342)
.+-..|+++.+.++ .+|..+. ++|+.|++.+|.++.. |. ..++|++|++++|+++ .+|. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccC---cccccceeec
Confidence 34567888888887 4454453 4789999999988853 32 2578999999999888 4453 2468889999
Q ss_pred cCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCC
Q 043372 92 PVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNG 171 (342)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 171 (342)
+.|.++ .+|. .+.+|+.|++++|.+. .+|. ..++|+.|++++|.+...... ..+|+.|.+++|.+...
T Consensus 270 s~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchh-hhhh----chhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC---cccccccccccCccccc
Confidence 998887 6664 2467889999988887 3443 247899999999988765432 34677888888877643
Q ss_pred CCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccC
Q 043372 172 EKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRI 251 (342)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 251 (342)
.. ...+|+.|++++|.+.. ++. .+++++.|++++|.+.. ++.. ..+|+.|++++|.+.+ .
T Consensus 338 P~----------lp~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 338 PT----------LPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-L 397 (788)
T ss_pred cc----------cccccceEecCCCccCC-CCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-C
Confidence 21 12578899999887763 332 34678889999888863 4432 3578999999998873 4
Q ss_pred CcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhh
Q 043372 252 PESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV 327 (342)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 327 (342)
|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|++. .+|..+.++++|+.+++++|++++..+..+
T Consensus 398 P~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 432 367999999999987 56643 346888999999988 788889999999999999999998776655
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=1.1e-18 Score=159.57 Aligned_cols=255 Identities=29% Similarity=0.354 Sum_probs=197.7
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEE
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLN 115 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 115 (342)
..-..|+++.+.++. .|..+. ++|+.|.+.+|+++ .+|. ..++|++|++++|.++ .+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 456789999998884 555565 48999999999998 4554 3589999999999998 7774 257899999
Q ss_pred ccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEecc
Q 043372 116 VADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISD 195 (342)
Q Consensus 116 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 195 (342)
+++|.+. .+|.. ...|+.|++++|.+...+. ..++|+.|++++|.+..... ....|+.|.+++
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~----------lp~~L~~L~Ls~ 331 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPA----------LPSELCKLWAYN 331 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCccccCCC----------Cccccccccccc
Confidence 9999887 34432 3678899999998886553 34789999999998875421 124677888888
Q ss_pred CCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeec
Q 043372 196 TNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEI 275 (342)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (342)
|.+.. ++ ..+.+|+.|++++|++.. +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+. .+
T Consensus 332 N~L~~-LP----~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~L 397 (788)
T PRK15387 332 NQLTS-LP----TLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SL 397 (788)
T ss_pred Ccccc-cc----ccccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CC
Confidence 87753 33 234689999999999873 4432 3578899999998873 4543 357999999999987 45
Q ss_pred cccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 276 PSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 276 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|..+..++.+ .+|+|++|
T Consensus 398 P~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L-~~LdLs~N 455 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGN 455 (788)
T ss_pred CCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCC-CeEECCCC
Confidence 543 367999999999998 56653 347889999999999 789999999999 99999998
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-21 Score=174.61 Aligned_cols=295 Identities=24% Similarity=0.309 Sum_probs=179.7
Q ss_pred CCCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccC--------------------
Q 043372 2 GKVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKR-------------------- 61 (342)
Q Consensus 2 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------- 61 (342)
|+++..+..+.+ .|++++|.+. ...+..+++|+.+....|++... ...-++
T Consensus 170 ~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p~p 240 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHPVP 240 (1081)
T ss_pred cchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecccccc
Confidence 455555666665 6777777765 12234455556665555554311 011234
Q ss_pred --ccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEE
Q 043372 62 --MRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLA 139 (342)
Q Consensus 62 --L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 139 (342)
|++++++.+++. ..|+.+..+.+|+.+++..|.++ .+|..++ ...+|+.|.+..|.+. .+|......+.|+.|+
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 444444444444 33344444455555555444443 4444443 2444444444444444 3333344445555555
Q ss_pred ccCCcCcCCCCC-ccccCc-ccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEE
Q 043372 140 IGGNGFSGKVPS-FENLHK-LREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLS 217 (342)
Q Consensus 140 l~~~~~~~~~~~-~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 217 (342)
+..|.+...++. +..... +..++.+.+.+...... .-...+.|+.|.+.+|.+.+...+.+... ..|+.|+
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLh 389 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY------EENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLH 389 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccc------cchhhHHHHHHHHhcCcccccchhhhccc-cceeeee
Confidence 555554444332 111111 33333333333221100 11233557778888888887777776666 6899999
Q ss_pred ecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccccc
Q 043372 218 VGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEG 297 (342)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 297 (342)
+++|.+.......+.++..|++|+++||.+. .+|..+..++.|+.|...+|++. .+| .+..++.|+.+|++.|.++.
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 9999987666667788999999999999998 67788888999999999999987 777 67788999999999998885
Q ss_pred ccCccccCCCCCcEEEcCCCcC
Q 043372 298 SIPSSLGKCQNLISLNLSNNNL 319 (342)
Q Consensus 298 ~~~~~~~~~~~L~~l~l~~~~~ 319 (342)
........-|+|++||++||.-
T Consensus 467 ~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 467 VTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhCCCcccceeeccCCcc
Confidence 4333323338999999999984
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.3e-19 Score=154.39 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=19.2
Q ss_pred CCccEEecCCccccc----ccCccccCCCCCcEEEcCCCcCc
Q 043372 283 ASLTILDFSANLLEG----SIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 283 ~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
+.|++|++++|.+++ .+...+..+++|+++++++|.+.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 455555555555431 12233344455666666666555
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=3.5e-17 Score=150.41 Aligned_cols=139 Identities=18% Similarity=0.336 Sum_probs=68.7
Q ss_pred cccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCc
Q 043372 13 KLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFP 92 (342)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~ 92 (342)
+..+|++++..++. .|..+ .++|+.|++++|.++.. |..+. .+|++|++++|.++ .+|..+. +.|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 34556665555553 22222 24566666666665533 22222 35666666666655 3343322 346666666
Q ss_pred CCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCC
Q 043372 93 VNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLG 169 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 169 (342)
+|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+...+..+ .++|+.|++++|.+.
T Consensus 250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLT 317 (754)
T ss_pred CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccc
Confidence 66655 5554432 35566666665555 3343332 35666666665555433222 124555555555443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.6e-19 Score=152.59 Aligned_cols=274 Identities=20% Similarity=0.287 Sum_probs=151.0
Q ss_pred EEeecccccc-CccccccCCCCCceeeccccccccC----CchhhcCccCccEEEeccccccc------ccCccccCCCC
Q 043372 17 LTVHANYLSG-EIPSSFGNLSSLEVLSATANQFVGR----IPETLRDIKRMRIIAFGINKLSG------EIPFSIYNLSS 85 (342)
Q Consensus 17 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~------~~~~~~~~l~~ 85 (342)
|+|..+.+.+ .....+..+++|++++++++.+++. ++..+...+++++++++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 4454444442 2223344455566666666665321 23334455566666666665441 12234455667
Q ss_pred CCEEeCcCCCCCCCCCccccCCC---CCCcEEEccCCccCC----CCCccccCC-CCccEEEccCCcCcCC-----CCCc
Q 043372 86 LSVFDFPVNQLQGSFPSDLGFTL---PNLELLNVADNQFAG----PIPASISNT-SNLMTLAIGGNGFSGK-----VPSF 152 (342)
Q Consensus 86 L~~l~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~~-----~~~~ 152 (342)
|+.++++++.+....+..+. .+ ++|++|++++|.+.. .....+..+ ++|+++++++|.+... ...+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred eeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 77777776666432222221 12 337777777666542 112233444 6777777777766531 1125
Q ss_pred cccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCc----cchhccCCCccEEEecCcccccccC
Q 043372 153 ENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLP----EAVGNLSTRLRKLSVGNNQLFGNIP 228 (342)
Q Consensus 153 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~ 228 (342)
..+++|+.+++++|.+.+.. ...+...+...++|+.+++++|.+.+... ..+... ++|++|++++|.+.+...
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 162 RANRDLKELNLANNGIGDAG--IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HhCCCcCEEECcCCCCchHH--HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHH
Confidence 55567777777777665411 11233345555677777777776653322 222233 578888888877653211
Q ss_pred cccc-----CcCCCCEEEcCCCcccc----cCCcccccccCcceEEccCCeeeee----ccccccCC-CCccEEecCCcc
Q 043372 229 SGLR-----NLVNLELLDLGDNQFIG----RIPESIGYLQKLQGLWLNGNKFLGE----IPSSIGNL-ASLTILDFSANL 294 (342)
Q Consensus 229 ~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~n~ 294 (342)
..+. ..+.|++|++++|.+.. .....+..+++|+++++++|.+.+. ....+... +.|+++++.++.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 1111 23688888888887752 2233445567888888888888743 33333344 678888877764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=5.1e-17 Score=149.38 Aligned_cols=247 Identities=23% Similarity=0.365 Sum_probs=161.0
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEE
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLN 115 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 115 (342)
.+...|+++++.++. .|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEE
Confidence 456677777777664 333333 46888888888877 4554443 47888888888877 666543 34678888
Q ss_pred ccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEecc
Q 043372 116 VADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISD 195 (342)
Q Consensus 116 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 195 (342)
+++|.+. .+|..+. .+|+.|++++|.+...+..+ .++|+.|++++|.+..... .+ .++|+.|++++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~-------~l--p~sL~~L~Ls~ 313 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPA-------HL--PSGITHLNVQS 313 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccccCcc-------cc--hhhHHHHHhcC
Confidence 8888776 4555443 57888888888777554433 2478888888887664321 11 24577777777
Q ss_pred CCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeec
Q 043372 196 TNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEI 275 (342)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (342)
|.+.. ++.. .+++|+.|++++|.+.. ++..+. ++|+.|++++|.+. .+|..+ .+.|+.|++++|.+. .+
T Consensus 314 N~Lt~-LP~~---l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 314 NSLTA-LPET---LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NL 382 (754)
T ss_pred Ccccc-CCcc---ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CC
Confidence 76653 2322 23578888888887763 444332 67888888888776 345443 357888888888776 55
Q ss_pred cccccCCCCccEEecCCcccccccCcccc----CCCCCcEEEcCCCcCc
Q 043372 276 PSSIGNLASLTILDFSANLLEGSIPSSLG----KCQNLISLNLSNNNLS 320 (342)
Q Consensus 276 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~L~~l~l~~~~~~ 320 (342)
|..+. ..|+.|++++|++. .+|..+. .++.+..+++.+|++.
T Consensus 383 P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55443 35778888888776 4554433 3467788888888876
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.8e-18 Score=123.64 Aligned_cols=154 Identities=28% Similarity=0.516 Sum_probs=73.7
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
++.+...|.++.|.++ ..+..++.+.+|++|+++.|++++ .|..+..+++|+.|+++-|.+. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3444444555555544 333444455555555555555542 2233455555555555544444 445555555555555
Q ss_pred eCcCCCCCC-CCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCC
Q 043372 90 DFPVNQLQG-SFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPL 168 (342)
Q Consensus 90 ~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 168 (342)
++..|++.. .+|.+++ .+..|+.|++++|.+. .+|..+.++.+||.|.+..|.+...+..++.++.|+++++.+|.+
T Consensus 108 dltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 555444331 3444444 2444555555555444 444444445555555555554444444444445555555544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5.7e-17 Score=117.63 Aligned_cols=157 Identities=24% Similarity=0.459 Sum_probs=133.5
Q ss_pred ccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCC
Q 043372 32 FGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNL 111 (342)
Q Consensus 32 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 111 (342)
+-++.+++.|.+++|.++. .|..+..+.+|+.|++.+|.|+ .+|..+.++++|+.|+++-|++. .+|..++ .+|.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchh
Confidence 3356788999999999984 4556999999999999999999 88999999999999999999987 8888888 69999
Q ss_pred cEEEccCCccC-CCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccE
Q 043372 112 ELLNVADNQFA-GPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLEL 190 (342)
Q Consensus 112 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 190 (342)
+.|++.+|.+. ...|+.|..+..|+-|++++|.+...++.++++++|+.+.+..|.+. ..+..++.++.|+.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-------~lpkeig~lt~lre 177 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-------SLPKEIGDLTRLRE 177 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-------hCcHHHHHHHHHHH
Confidence 99999988775 35788888999999999999999988888999999999999988765 34455666677777
Q ss_pred EEeccCCCC
Q 043372 191 LEISDTNCG 199 (342)
Q Consensus 191 l~l~~~~~~ 199 (342)
+++.++...
T Consensus 178 lhiqgnrl~ 186 (264)
T KOG0617|consen 178 LHIQGNRLT 186 (264)
T ss_pred Hhcccceee
Confidence 777776554
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=9.9e-15 Score=117.60 Aligned_cols=247 Identities=19% Similarity=0.264 Sum_probs=150.3
Q ss_pred hhcCccCccEEEeccccccccc----CccccCCCCCCEEeCcCCC---CCCCCCccccCCCCCCcEEEccCCccCCCCCc
Q 043372 55 TLRDIKRMRIIAFGINKLSGEI----PFSIYNLSSLSVFDFPVNQ---LQGSFPSDLGFTLPNLELLNVADNQFAGPIPA 127 (342)
Q Consensus 55 ~~~~l~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~l~l~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 127 (342)
.+..+..+.+++|++|.+.... ...+++.+.|+..++++-- ....+|..+. .+..
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~------------------~l~~ 86 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK------------------MLSK 86 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH------------------HHHH
Confidence 3445677777788877766422 2344556666666665421 1112222111 0112
Q ss_pred cccCCCCccEEEccCCcCcCCCCC-----ccccCcccEEEcccCCCCCCCCCc-------hhhhhhhccCCcccEEEecc
Q 043372 128 SISNTSNLMTLAIGGNGFSGKVPS-----FENLHKLREVSISQNPLGNGEKDD-------LEFVNSLVNTSRLELLEISD 195 (342)
Q Consensus 128 ~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~-------~~~~~~l~~~~~L~~l~l~~ 195 (342)
.+..+|+|++++++.|.+...... ++++..|++|.+.+|.+....... .+........+.|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 233344555555555544432221 455556666666666554322111 01233455668888888888
Q ss_pred CCCCCC----CccchhccCCCccEEEecCcccccc----cCccccCcCCCCEEEcCCCcccc----cCCcccccccCcce
Q 043372 196 TNCGGM----LPEAVGNLSTRLRKLSVGNNQLFGN----IPSGLRNLVNLELLDLGDNQFIG----RIPESIGYLQKLQG 263 (342)
Q Consensus 196 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~ 263 (342)
|.+.+. +...+... +.++.+.+..|.|... ....+..+++|++||+++|.++. .+...++.+++|+.
T Consensus 167 Nrlen~ga~~~A~~~~~~-~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSH-PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cccccccHHHHHHHHHhc-cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 876543 22233333 6788888888877532 34467789999999999998864 34456777899999
Q ss_pred EEccCCeeeeeccccc-----cCCCCccEEecCCcccccc----cCccccCCCCCcEEEcCCCcCc
Q 043372 264 LWLNGNKFLGEIPSSI-----GNLASLTILDFSANLLEGS----IPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 264 L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
+++++|-+...-...+ ...|+|+++.+.+|.++.. +..++..-|.|+.|++++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999998764322222 2468999999999987732 3445555789999999999993
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.9e-14 Score=115.64 Aligned_cols=190 Identities=19% Similarity=0.187 Sum_probs=89.0
Q ss_pred CCCCcccEEEeeccccccCc-cccccCCCCCceeeccccccccC--CchhhcCccCccEEEecccccccccCc-cccCCC
Q 043372 9 GSIPKLRILTVHANYLSGEI-PSSFGNLSSLEVLSATANQFVGR--IPETLRDIKRMRIIAFGINKLSGEIPF-SIYNLS 84 (342)
Q Consensus 9 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~l~ 84 (342)
+++.+||.+.+.++...... ......|++++.|+|+.|-+... .......+++|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45556666666555443111 12444556666666666544321 111223456666666666554321111 112455
Q ss_pred CCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCC--CCccccCcccEEE
Q 043372 85 SLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKV--PSFENLHKLREVS 162 (342)
Q Consensus 85 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~ 162 (342)
+|+.|.++.|.+...-.......+|+|+.|++..|...........-+..|++|++++|++.+.. .....++.|..++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 56666666655542222222234566666666555322222222334455666666666555444 2255555566666
Q ss_pred cccCCCCCCCCCchhhhhhhccCCcccEEEeccCCC
Q 043372 163 ISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNC 198 (342)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 198 (342)
++.+.+.+....+..........++|++|++..|.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 555555443322222222334445555555555444
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=9.8e-13 Score=109.27 Aligned_cols=208 Identities=21% Similarity=0.201 Sum_probs=128.5
Q ss_pred CCCCCcEEEccCCccCCCCC-ccccCCCCccEEEccCCcCcCCCCC---ccccCcccEEEcccCCCCCCCCCchhhhhhh
Q 043372 107 TLPNLELLNVADNQFAGPIP-ASISNTSNLMTLAIGGNGFSGKVPS---FENLHKLREVSISQNPLGNGEKDDLEFVNSL 182 (342)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 182 (342)
++.+|+.+.+.++.+..... .....|+++++|+++.|-+..+.+. ..++|+|+.|+++.|.+....... .-
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-----~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-----TT 193 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----ch
Confidence 46677777777766542111 2455678888888887766554333 567788888888877665432221 11
Q ss_pred ccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCC--cccccccC
Q 043372 183 VNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIP--ESIGYLQK 260 (342)
Q Consensus 183 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~ 260 (342)
..+++++.|.++.|.++-.-...+...+|+++.|++.+|............++.|+.|+|++|.+.. .+ .....+|.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccc
Confidence 2557777888888777632222333444678888887774322333334456777888888877652 22 34566778
Q ss_pred cceEEccCCeeeee-cccc-----ccCCCCccEEecCCccccc-ccCccccCCCCCcEEEcCCCcCc
Q 043372 261 LQGLWLNGNKFLGE-IPSS-----IGNLASLTILDFSANLLEG-SIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 261 L~~L~l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
|+.|+++.|++.+. .|.. -..+++|+.|++..|++.+ .....+..+++|+.+.+..+++.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 88888888877643 2222 2356778888888887742 12344555677777777777776
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=3e-13 Score=115.89 Aligned_cols=181 Identities=27% Similarity=0.452 Sum_probs=130.3
Q ss_pred EEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEE
Q 043372 113 LLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLE 192 (342)
Q Consensus 113 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~ 192 (342)
..+++.|.+. .+|..+..+..|..+.++.|.+..+...+.++..|..++++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls---------------------------- 129 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS---------------------------- 129 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc----------------------------
Confidence 3444444444 44444444445555555555444444444444444444444
Q ss_pred eccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeee
Q 043372 193 ISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFL 272 (342)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 272 (342)
.++++ ..+..++.++ |+.|.+++|++. ..+..+...+.|..|+.+.|.+. ..|..+.++.+|+.|.++.|++.
T Consensus 130 --~NqlS-~lp~~lC~lp--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 130 --SNQLS-HLPDGLCDLP--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred --cchhh-cCChhhhcCc--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence 44433 3455566664 889999999886 67777778899999999999988 56667888999999999999987
Q ss_pred eeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCcccc
Q 043372 273 GEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSL 333 (342)
Q Consensus 273 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l 333 (342)
.+|..+..+| |.+||++.|++. .+|-+|.+++.|++|.|.+||++ ..|.+++.-...
T Consensus 203 -~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkV 259 (722)
T KOG0532|consen 203 -DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKV 259 (722)
T ss_pred -hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccce
Confidence 7777777655 899999999998 89999999999999999999999 567777765554
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=6.2e-12 Score=118.06 Aligned_cols=128 Identities=22% Similarity=0.287 Sum_probs=67.0
Q ss_pred CcccEEEeeccccccCccccccCCCCCceeeccccc--cccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 12 PKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQ--FVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
...|++.+.++.+... ... ..+++|++|-+..+. +.......|..++.|+.|++++|.--..+|+.++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4455555555544321 111 123456666666554 333344445556666666666554333556666666666666
Q ss_pred eCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCC
Q 043372 90 DFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGN 143 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 143 (342)
+++++.+. .+|..+. .+.+|.+|++..+......+.....+++|++|.+...
T Consensus 601 ~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 66666655 5565555 3556666666554433233444444566666655443
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=1.1e-12 Score=105.89 Aligned_cols=139 Identities=23% Similarity=0.328 Sum_probs=91.3
Q ss_pred cCCCCccEEEccCCcCcCCCCC-----ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCC--
Q 043372 130 SNTSNLMTLAIGGNGFSGKVPS-----FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGML-- 202 (342)
Q Consensus 130 ~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~-- 202 (342)
..-+.|+.+....|.+...... +...+.|+.+.+..|.+...... .....+..|++|+.|++..|.++..-
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~--al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT--ALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhH--HHHHHHHhCCcceeeecccchhhhHHHH
Confidence 4457788888777766543322 67778888888888877654332 45667888888888888888776432
Q ss_pred --ccchhccCCCccEEEecCcccccccCc----c-ccCcCCCCEEEcCCCccccc----CCcccccccCcceEEccCCee
Q 043372 203 --PEAVGNLSTRLRKLSVGNNQLFGNIPS----G-LRNLVNLELLDLGDNQFIGR----IPESIGYLQKLQGLWLNGNKF 271 (342)
Q Consensus 203 --~~~~~~~~~~L~~L~l~~~~~~~~~~~----~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 271 (342)
...+..+ +.|++|++++|.+...-.. . -...|+|+++.+.+|.++.. ....+...|.|+.|++++|++
T Consensus 232 ~LakaL~s~-~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSW-PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccc-chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2333344 4788888888877543111 1 13367888888888877532 222334467788888888877
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=2.4e-11 Score=114.24 Aligned_cols=250 Identities=22% Similarity=0.269 Sum_probs=144.3
Q ss_pred CCCcccEEEeeccc--cccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCC
Q 043372 10 SIPKLRILTVHANY--LSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLS 87 (342)
Q Consensus 10 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 87 (342)
.+++|++|-+.++. +.......|..++.|++||+++|.--+..|..++++.+||+|+++++.+. .+|..++.+..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 56689999998885 55566677888999999999988755678888999999999999999998 8899999999999
Q ss_pred EEeCcCCCCCCCCCccccCCCCCCcEEEccCCccC--CCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEccc
Q 043372 88 VFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFA--GPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQ 165 (342)
Q Consensus 88 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~ 165 (342)
+|++..+.-...+|. ....+++|++|.+...... ......+.++.+|+.+....... .....+..++.|......-
T Consensus 622 ~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred eeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhh
Confidence 999988765534433 3335899999988655421 11222334455555555433222 1112233333333222111
Q ss_pred CCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhcc-----CCCccEEEecCcccccccCccccCcCCCCEE
Q 043372 166 NPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNL-----STRLRKLSVGNNQLFGNIPSGLRNLVNLELL 240 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 240 (342)
..-. .........+..+.+|+.|.+..+...+......... ++++..+.+.+|.-. ..+.+..-.++|+.|
T Consensus 700 ~~~~---~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 700 SIEG---CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSL 775 (889)
T ss_pred hhcc---cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEE
Confidence 1000 0001234456666777777777776543211111000 112333333333222 233333445777777
Q ss_pred EcCCCcccccCCcccccccCcceEEc
Q 043372 241 DLGDNQFIGRIPESIGYLQKLQGLWL 266 (342)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~L~~L~l 266 (342)
.+..|...+...+....+..+..+.+
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~~i~ 801 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKELIL 801 (889)
T ss_pred EEecccccccCCCHHHHhhhcccEEe
Confidence 77777655444444444444444333
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.7e-11 Score=91.55 Aligned_cols=123 Identities=22% Similarity=0.318 Sum_probs=31.1
Q ss_pred CCCCceeeccccccccCCchhhc-CccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcE
Q 043372 35 LSSLEVLSATANQFVGRIPETLR-DIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLEL 113 (342)
Q Consensus 35 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 113 (342)
..++++|+|.++.|+.+ ..+. .+.+|+.|++++|.|... +.+..++.|++|+++.|.++ .+...+...+|+|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 34455555555555422 1232 244555555555555421 23444555555555555554 333322212555555
Q ss_pred EEccCCccCCC-CCccccCCCCccEEEccCCcCcCCCCC----ccccCcccEEE
Q 043372 114 LNVADNQFAGP-IPASISNTSNLMTLAIGGNGFSGKVPS----FENLHKLREVS 162 (342)
Q Consensus 114 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~l~ 162 (342)
|++++|.+... .-..+..+++|+.|++.+|++.....+ +..+|+|+.|+
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 55555555421 112334455555555555555433222 34445555444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=9.4e-11 Score=88.63 Aligned_cols=131 Identities=24% Similarity=0.360 Sum_probs=51.2
Q ss_pred hcCccCccEEEecccccccccCcccc-CCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccc-cCCC
Q 043372 56 LRDIKRMRIIAFGINKLSGEIPFSIY-NLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASI-SNTS 133 (342)
Q Consensus 56 ~~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 133 (342)
+.+..++++|+|.++.|.. + +.+. .+.+|+.|++++|.++ .+.. +. .++.|+.|++++|.+... ...+ ..+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~-l~-~L~~L~~L~L~~N~I~~i-~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG-LP-GLPRLKTLDLSNNRISSI-SEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC-cc-ChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence 4455678999999999974 3 3454 6789999999999987 5553 32 488999999999988743 3333 4588
Q ss_pred CccEEEccCCcCcCCCC--CccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEecc
Q 043372 134 NLMTLAIGGNGFSGKVP--SFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISD 195 (342)
Q Consensus 134 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 195 (342)
+|++|++++|.+.+... .+..+++|+.|++.+|++..... .-...+..+|+|+.|+...
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~---YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN---YRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT---HHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh---HHHHHHHHcChhheeCCEE
Confidence 99999999998876543 37888899999999888765322 2233456677777776543
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.06 E-value=2.5e-10 Score=105.01 Aligned_cols=93 Identities=43% Similarity=0.702 Sum_probs=52.1
Q ss_pred CCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCC
Q 043372 237 LELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSN 316 (342)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 316 (342)
++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCccccchhhcC
Q 043372 317 NNLSGTIPTEVIG 329 (342)
Q Consensus 317 ~~~~~~~~~~~~~ 329 (342)
|.+++.+|..+..
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 5555555555443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.8e-10 Score=71.71 Aligned_cols=60 Identities=28% Similarity=0.496 Sum_probs=38.2
Q ss_pred CcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccc
Q 043372 12 PKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINK 71 (342)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 71 (342)
|+|++|++++|.++...+..|.++++|++|++++|.++.+.+.+|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666666665555666666666666666666665555666666666666666654
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=1.3e-09 Score=100.30 Aligned_cols=109 Identities=27% Similarity=0.493 Sum_probs=83.5
Q ss_pred CCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEc
Q 043372 37 SLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNV 116 (342)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 116 (342)
.++.|+|+++.+.+..|..+.++++|+.|+|++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEEC
Confidence 367788888888777777888888888888888888777777788888888888888888777777666 5888888888
Q ss_pred cCCccCCCCCccccCC-CCccEEEccCCcCc
Q 043372 117 ADNQFAGPIPASISNT-SNLMTLAIGGNGFS 146 (342)
Q Consensus 117 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 146 (342)
++|.+.+.+|..+... .++..+++.+|...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 8888877777766542 45667777776543
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=1.7e-09 Score=95.03 Aligned_cols=175 Identities=35% Similarity=0.555 Sum_probs=89.7
Q ss_pred CCccEEEccCCcCcCCCCCccccC-cccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCC
Q 043372 133 SNLMTLAIGGNGFSGKVPSFENLH-KLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLST 211 (342)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 211 (342)
+.++.+++.++.+....+...... +|+.++++.+.+.. ....+..++.|+.|+++.|.+.+. +...... +
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-------l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~-~ 186 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-------LPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNL-S 186 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh-------hhhhhhccccccccccCCchhhhh-hhhhhhh-h
Confidence 445555555555444444443332 55555555554432 112344555555555555544322 1111112 4
Q ss_pred CccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecC
Q 043372 212 RLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFS 291 (342)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 291 (342)
.++.|+++++++. .++........|+++.+++|.+. ..+..+..+..+..+.+.++++. ..+..++.+++++.|+++
T Consensus 187 ~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 187 NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccc
Confidence 5666666666665 33333333344666666666433 33444555566666666666654 334455566666666666
Q ss_pred CcccccccCccccCCCCCcEEEcCCCcCcc
Q 043372 292 ANLLEGSIPSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 292 ~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
+|.+.. ++. ++...+++.++++++.+..
T Consensus 264 ~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 264 NNQISS-ISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccc-ccc-ccccCccCEEeccCccccc
Confidence 666652 332 5566666666666666653
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=1.1e-09 Score=68.22 Aligned_cols=61 Identities=23% Similarity=0.398 Sum_probs=46.4
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCC
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQL 96 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~ 96 (342)
|+|++|++++|.++...+.+|.++++|++|++++|.+....+.+|..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888877777767777888888888888887766667777777777777777653
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1.5e-09 Score=95.29 Aligned_cols=87 Identities=28% Similarity=0.491 Sum_probs=42.9
Q ss_pred cCCCCCCEEeCcCCCCCCCCCccccCCC-CCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCccc
Q 043372 81 YNLSSLSVFDFPVNQLQGSFPSDLGFTL-PNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLR 159 (342)
Q Consensus 81 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 159 (342)
..++.+..+++..+.++ .++.... .. ++|+.|+++++.+. ..+..+..+++|+.|++++|++.+........+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 33345555555555554 4444333 12 25555555555554 232334455555555555555554444433455555
Q ss_pred EEEcccCCCCC
Q 043372 160 EVSISQNPLGN 170 (342)
Q Consensus 160 ~l~l~~~~~~~ 170 (342)
.++++++.+..
T Consensus 190 ~L~ls~N~i~~ 200 (394)
T COG4886 190 NLDLSGNKISD 200 (394)
T ss_pred heeccCCcccc
Confidence 55555555443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2.2e-10 Score=91.29 Aligned_cols=132 Identities=30% Similarity=0.333 Sum_probs=97.3
Q ss_pred CcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEE
Q 043372 186 SRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLW 265 (342)
Q Consensus 186 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 265 (342)
..|+.+++++|.+.. +.+++- +.|.++.|+++.|.+... ..+..+++|..||+++|.++ ....|-..+.+++.|.
T Consensus 284 q~LtelDLS~N~I~~-iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchhh-hhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 457788888887653 333333 337889999999887632 34778889999999999887 4556667788899999
Q ss_pred ccCCeeeeeccccccCCCCccEEecCCcccccc-cCccccCCCCCcEEEcCCCcCccccch
Q 043372 266 LNGNKFLGEIPSSIGNLASLTILDFSANLLEGS-IPSSLGKCQNLISLNLSNNNLSGTIPT 325 (342)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~ 325 (342)
+++|.+. ....+..+.+|..||+++|++... -...++++|.|+.+.+.+||+.+ +|+
T Consensus 359 La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vd 416 (490)
T KOG1259|consen 359 LAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVD 416 (490)
T ss_pred hhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cch
Confidence 9888774 224466678899999999987631 24677889999999999999984 443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=5e-11 Score=102.57 Aligned_cols=160 Identities=29% Similarity=0.478 Sum_probs=84.4
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+..+.-|+.+.+..|.+. ..+.+++++..|+.++++.|++. ..|..+..| -|+.|.+++|+++ .+|+.++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~ 164 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGL 164 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCccccc
Confidence 34444444444444444444433 34445555555555555555554 333333332 2555555556555 55555555
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVS 162 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 162 (342)
.+.|..++.+.|++. .+|.... .+.+|+.|.+..|++. .+|..+. .-.|..||++.|.+..++..|.++.+|+.|-
T Consensus 165 ~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred chhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCceeecchhhhhhhhheeee
Confidence 556666666666555 5555554 3555555555555554 3444444 3345556666666655555566666666666
Q ss_pred cccCCCCC
Q 043372 163 ISQNPLGN 170 (342)
Q Consensus 163 l~~~~~~~ 170 (342)
+.+|++..
T Consensus 241 LenNPLqS 248 (722)
T KOG0532|consen 241 LENNPLQS 248 (722)
T ss_pred eccCCCCC
Confidence 66665543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=4.5e-10 Score=89.55 Aligned_cols=128 Identities=24% Similarity=0.267 Sum_probs=60.8
Q ss_pred CcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcC
Q 043372 156 HKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLV 235 (342)
Q Consensus 156 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 235 (342)
..|+.+++++|.+. .+-.++.-.|.++.|+++.|.+...-. +..+ ++|++|++++|.+. ....+-..+-
T Consensus 284 q~LtelDLS~N~I~-------~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L-~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-------QIDESVKLAPKLRRLILSQNRIRTVQN--LAEL-PQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred hhhhhccccccchh-------hhhhhhhhccceeEEeccccceeeehh--hhhc-ccceEeecccchhH-hhhhhHhhhc
Confidence 34444555544443 222333444455555555544432211 2233 45556666665544 2222333445
Q ss_pred CCCEEEcCCCcccccCCcccccccCcceEEccCCeeeee-ccccccCCCCccEEecCCcccc
Q 043372 236 NLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGE-IPSSIGNLASLTILDFSANLLE 296 (342)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 296 (342)
+++.|.+++|.+.. ...+..+-+|..|++++|++..- -...++++|-|+++.+.+|++.
T Consensus 353 NIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55666666665531 12344455566666666655421 1234556666666666666655
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.88 E-value=4.5e-11 Score=99.07 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=15.7
Q ss_pred CCccEEecCCcccc-cccCccccCCCCCcEEEcCCC
Q 043372 283 ASLTILDFSANLLE-GSIPSSLGKCQNLISLNLSNN 317 (342)
Q Consensus 283 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~~ 317 (342)
..|+.+.+++++.. +...+.+..|++|+++++-+|
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 34455555554322 223344444555555555444
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.3e-11 Score=97.82 Aligned_cols=196 Identities=19% Similarity=0.162 Sum_probs=134.4
Q ss_pred CCCcEEEccCCccCC-CCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCC
Q 043372 109 PNLELLNVADNQFAG-PIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTS 186 (342)
Q Consensus 109 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 186 (342)
..|++++++...++. .....+..|.+|+.+.+.++.+.+.... +..-.+|+.++++.+.--. . .+....+..|+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t--~--n~~~ll~~scs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT--E--NALQLLLSSCS 260 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc--h--hHHHHHHHhhh
Confidence 458899998877652 2345567899999999999988774433 7888899999998874322 1 14445678999
Q ss_pred cccEEEeccCCCCC-CCccchhccCCCccEEEecCcccc--c-ccCccccCcCCCCEEEcCCCcc-cccCCcccccccCc
Q 043372 187 RLELLEISDTNCGG-MLPEAVGNLSTRLRKLSVGNNQLF--G-NIPSGLRNLVNLELLDLGDNQF-IGRIPESIGYLQKL 261 (342)
Q Consensus 187 ~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~--~-~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L 261 (342)
.|..|+++.|.... .....+....++++.|+++++.-. . -+..-...+++|.+||+++|.. .......+.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 99999999997543 334444555678999999987421 1 1222335689999999999864 32333456778999
Q ss_pred ceEEccCCeeeeeccc---cccCCCCccEEecCCcccccccCccccCCCCCc
Q 043372 262 QGLWLNGNKFLGEIPS---SIGNLASLTILDFSANLLEGSIPSSLGKCQNLI 310 (342)
Q Consensus 262 ~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 310 (342)
+++.++.|.. ..|. .+...|+|.+|++.++--.+...-....+++|+
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 9999999974 3444 346778999999988854333333333455544
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.72 E-value=1.6e-10 Score=95.88 Aligned_cols=298 Identities=14% Similarity=0.083 Sum_probs=180.1
Q ss_pred cccEEEeecccccc--CccccccCCCCCceeeccccc-cccCCchhh-cCccCccEEEecccc-cccccCc-cccCCCCC
Q 043372 13 KLRILTVHANYLSG--EIPSSFGNLSSLEVLSATANQ-FVGRIPETL-RDIKRMRIIAFGINK-LSGEIPF-SIYNLSSL 86 (342)
Q Consensus 13 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~-i~~~~~~-~~~~l~~L 86 (342)
-||.|.+.++.-.+ ..-....++|+++.|.+.++. +++.....+ +.+++|+++++..|. ++...-+ -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777777765433 233445568888888888775 333332333 457888888887743 4433323 23467888
Q ss_pred CEEeCcCCC-CCCCCCccccCCCCCCcEEEccCCccCCC--CCccccCCCCccEEEccCCc-CcCCCC--CccccCcccE
Q 043372 87 SVFDFPVNQ-LQGSFPSDLGFTLPNLELLNVADNQFAGP--IPASISNTSNLMTLAIGGNG-FSGKVP--SFENLHKLRE 160 (342)
Q Consensus 87 ~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~--~~~~~~~L~~ 160 (342)
++++++|+. +++.-...+..++..++.+.+.+|.-... +...-.+++-+.++++..|. +++..- .-..+..++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 888888874 33322333344556666666665422110 00111345556666655542 222211 1356778888
Q ss_pred EEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCC-CCCCCccchhccCCCccEEEecCccccc--ccCccccCcCCC
Q 043372 161 VSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTN-CGGMLPEAVGNLSTRLRKLSVGNNQLFG--NIPSGLRNLVNL 237 (342)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L 237 (342)
+..+++...+. .....-..++.+|+.+.+.+|. +++.-...+....+.|+.+++..+.... .+...-.+++.|
T Consensus 299 l~~s~~t~~~d----~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 299 LCYSSCTDITD----EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred hcccCCCCCch----HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 88887755331 1333334577999999999984 6666666666666789999998876431 133344578999
Q ss_pred CEEEcCCCcccccC-----CcccccccCcceEEccCCeee-eeccccccCCCCccEEecCCccc-ccc-cCccccCCCCC
Q 043372 238 ELLDLGDNQFIGRI-----PESIGYLQKLQGLWLNGNKFL-GEIPSSIGNLASLTILDFSANLL-EGS-IPSSLGKCQNL 309 (342)
Q Consensus 238 ~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~-~~~-~~~~~~~~~~L 309 (342)
+++.++.|...... ...-.....++.+.+++|... +.....+..+++|+++++.+++- +.+ +...-.++|++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 99999988754322 222344568999999999664 34456678899999999999853 222 22233446777
Q ss_pred cEEEc
Q 043372 310 ISLNL 314 (342)
Q Consensus 310 ~~l~l 314 (342)
+...+
T Consensus 455 ~v~a~ 459 (483)
T KOG4341|consen 455 KVHAY 459 (483)
T ss_pred eehhh
Confidence 65543
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=1.6e-09 Score=85.19 Aligned_cols=247 Identities=19% Similarity=0.215 Sum_probs=142.8
Q ss_pred hcCccCccEEEecccccccccC----ccccCCCCCCEEeCcCCCC---CCCCCccccCCCCCCcEEEccCCccCCCCCcc
Q 043372 56 LRDIKRMRIIAFGINKLSGEIP----FSIYNLSSLSVFDFPVNQL---QGSFPSDLGFTLPNLELLNVADNQFAGPIPAS 128 (342)
Q Consensus 56 ~~~l~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~l~l~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 128 (342)
+..+..+..++|++|.|..... ..+++-.+|+..+++.--. .+.++.++. .+...
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~------------------~Ll~a 87 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV------------------MLLKA 87 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH------------------HHHHH
Confidence 4456777888888887765433 3344455666666554211 111111110 11123
Q ss_pred ccCCCCccEEEccCCcCcCCCCC-----ccccCcccEEEcccCCCCCCCCCch-------hhhhhhccCCcccEEEeccC
Q 043372 129 ISNTSNLMTLAIGGNGFSGKVPS-----FENLHKLREVSISQNPLGNGEKDDL-------EFVNSLVNTSRLELLEISDT 196 (342)
Q Consensus 129 ~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~~-------~~~~~l~~~~~L~~l~l~~~ 196 (342)
+.+||.++..+++.|.+....+. ++.-+.|++|.+++|.+......-. +.......-|.|+++...+|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34556666666666655443332 4555666677776666554332210 12223345577888888777
Q ss_pred CCCCCCcc---chhccCCCccEEEecCcccccc-----cCccccCcCCCCEEEcCCCcccc----cCCcccccccCcceE
Q 043372 197 NCGGMLPE---AVGNLSTRLRKLSVGNNQLFGN-----IPSGLRNLVNLELLDLGDNQFIG----RIPESIGYLQKLQGL 264 (342)
Q Consensus 197 ~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L 264 (342)
.+...-.. .....-..++++.+..|.|... .-..+..+++|+.||+++|.++. .....+..++.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 65432111 1111114788888888877532 11233567899999999998864 234456677889999
Q ss_pred EccCCeeeeecccc----c--cCCCCccEEecCCcccccccCcc-------ccCCCCCcEEEcCCCcCc
Q 043372 265 WLNGNKFLGEIPSS----I--GNLASLTILDFSANLLEGSIPSS-------LGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 265 ~l~~~~~~~~~~~~----~--~~~~~L~~L~l~~n~~~~~~~~~-------~~~~~~L~~l~l~~~~~~ 320 (342)
.+.+|-++..-... | .-.|+|..|.+.+|.+.+.+... -+.+|-|..+.+.+|.+.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 99999775332221 2 13588999999998655432211 134788888999999887
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.2e-08 Score=81.39 Aligned_cols=107 Identities=18% Similarity=0.272 Sum_probs=59.8
Q ss_pred CCCceeeccccccccCCc-hhh-cCccCccEEEeccccccc--ccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCC
Q 043372 36 SSLEVLSATANQFVGRIP-ETL-RDIKRMRIIAFGINKLSG--EIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNL 111 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 111 (342)
.-++.+.+.++.+..... ..| ..+..++.++|.+|.|.+ .....+..+|+|++|+++.|.+...+ ........+|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNL 123 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccce
Confidence 344455555665542211 123 346677888888887763 12233456777888888777665222 1111235677
Q ss_pred cEEEccCCccC-CCCCccccCCCCccEEEccCC
Q 043372 112 ELLNVADNQFA-GPIPASISNTSNLMTLAIGGN 143 (342)
Q Consensus 112 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 143 (342)
+.|.+.+..+. ......+..+|.+++|.++.|
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 77777666554 122334456677777777666
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=8.1e-10 Score=87.93 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=76.0
Q ss_pred cccEEEeeccccccC-ccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccc-ccc-ccCccccCCCCCCEE
Q 043372 13 KLRILTVHANYLSGE-IPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINK-LSG-EIPFSIYNLSSLSVF 89 (342)
Q Consensus 13 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~-~~~~~~~~l~~L~~l 89 (342)
.|++||++...++-. ...-+..|.+|+.|++.+.++.+.+...+.+-.+|+.++++.+. ++. ...-.+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 366666666655522 22334556666667777666666555666666667777666654 221 111234456666666
Q ss_pred eCcCCCCCCCCCccc-cCCCCCCcEEEccCCcc---CCCCCccccCCCCccEEEccCCcCcC--CCCCccccCcccEEEc
Q 043372 90 DFPVNQLQGSFPSDL-GFTLPNLELLNVADNQF---AGPIPASISNTSNLMTLAIGGNGFSG--KVPSFENLHKLREVSI 163 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l 163 (342)
+++||.........+ ..--++|+.|+++++.- ...+.....++|++.+|+++++.... .+..+.+++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666665432111111 11134566666654321 11122223455666666665543211 1112445555555555
Q ss_pred ccC
Q 043372 164 SQN 166 (342)
Q Consensus 164 ~~~ 166 (342)
+.|
T Consensus 346 sRC 348 (419)
T KOG2120|consen 346 SRC 348 (419)
T ss_pred hhh
Confidence 554
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=1.7e-08 Score=88.94 Aligned_cols=248 Identities=24% Similarity=0.290 Sum_probs=156.8
Q ss_pred cCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCcc
Q 043372 57 RDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLM 136 (342)
Q Consensus 57 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 136 (342)
..+..++.+.+..+.|. .....+..+..|..+++.+|.+. .+..... .+++|++|++++|.+... ..+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i--~~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKL--EGLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchh-hhhcchheeccccccccc--cchhhccchh
Confidence 35667777778888777 33445778889999999999887 4443222 588999999999988743 3355667799
Q ss_pred EEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEE
Q 043372 137 TLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKL 216 (342)
Q Consensus 137 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 216 (342)
.|++.+|.+..+. .+..++.++.++++++.+...+.. . ...+..++.+.+.++.+...-..... ..+..+
T Consensus 144 ~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~-----~-~~~~~~l~~l~l~~n~i~~i~~~~~~---~~l~~~ 213 (414)
T KOG0531|consen 144 ELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIEND-----E-LSELISLEELDLGGNSIREIEGLDLL---KKLVLL 213 (414)
T ss_pred hheeccCcchhcc-CCccchhhhcccCCcchhhhhhhh-----h-hhhccchHHHhccCCchhcccchHHH---HHHHHh
Confidence 9999998877543 345578888888888877653321 1 45667777777777765432211111 233344
Q ss_pred EecCcccccccCccccCcCC--CCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcc
Q 043372 217 SVGNNQLFGNIPSGLRNLVN--LELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANL 294 (342)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 294 (342)
.+..+.+... ..+..... |+.+.++++.+. ..+..+..+..+..+++.++++... ..+...+.+..+....+.
T Consensus 214 ~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 214 SLLDNKISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNK 288 (414)
T ss_pred hcccccceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcch
Confidence 5555655422 11222233 778888888776 3324556677788888888776522 223445566666666666
Q ss_pred cccc---cCcc-ccCCCCCcEEEcCCCcCccccc
Q 043372 295 LEGS---IPSS-LGKCQNLISLNLSNNNLSGTIP 324 (342)
Q Consensus 295 ~~~~---~~~~-~~~~~~L~~l~l~~~~~~~~~~ 324 (342)
+... .... ....+.++.+.+..+++....+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hcchhhhhccccccccccccccccccCccccccc
Confidence 5421 1111 4446788888888888875443
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=3.4e-08 Score=86.98 Aligned_cols=243 Identities=26% Similarity=0.353 Sum_probs=158.7
Q ss_pred CCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcE
Q 043372 34 NLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLEL 113 (342)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 113 (342)
.+..++.+.+..+.+.. ....+..+++|..+++.+|.|. .....+..+++|+++++++|.+. .+..-- .++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccchh--hccchhh
Confidence 45666777777777764 2234677889999999999987 33333788999999999999987 443322 3677999
Q ss_pred EEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEE
Q 043372 114 LNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLE 192 (342)
Q Consensus 114 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~ 192 (342)
|++.+|.+... ..+..++.|+.+++++|.+...... ...+.+++.+.+.++.+...+. +..+..+..+.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--------~~~~~~l~~~~ 214 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--------LDLLKKLVLLS 214 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--------hHHHHHHHHhh
Confidence 99999988632 3455588999999999988766543 4778889999999888765432 22222333334
Q ss_pred eccCCCCCCCccchhccCC--CccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCe
Q 043372 193 ISDTNCGGMLPEAVGNLST--RLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNK 270 (342)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (342)
+..+.+...-. +... . .++.+++.++.+. ..+..+..+..+..+++.++.+... ..+...+.+..+....+.
T Consensus 215 l~~n~i~~~~~--l~~~-~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 215 LLDNKISKLEG--LNEL-VMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNK 288 (414)
T ss_pred cccccceeccC--cccc-hhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcch
Confidence 44443332111 1111 1 2788888888876 3335566778888999988877532 223445566666666665
Q ss_pred eeee---ccc-cccCCCCccEEecCCccccc
Q 043372 271 FLGE---IPS-SIGNLASLTILDFSANLLEG 297 (342)
Q Consensus 271 ~~~~---~~~-~~~~~~~L~~L~l~~n~~~~ 297 (342)
+... ... .....+.+..+.+..+....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hcchhhhhccccccccccccccccccCcccc
Confidence 5421 111 13456778888888887664
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=3.9e-08 Score=78.52 Aligned_cols=211 Identities=17% Similarity=0.138 Sum_probs=101.6
Q ss_pred CCCCCCEEeCcCCCCCCC-CCccccCCCCCCcEEEccCCccCCC--CCccccCCCCccEEEccCCcCcCCCCCc-cccCc
Q 043372 82 NLSSLSVFDFPVNQLQGS-FPSDLGFTLPNLELLNVADNQFAGP--IPASISNTSNLMTLAIGGNGFSGKVPSF-ENLHK 157 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 157 (342)
....++.+.+.++.+-.. ....+......++++++.+|.+... +...+.++|.|+.|+++.|++...+... ....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 333445555555544311 1122333456677777777766522 2234456777777777777766544332 34556
Q ss_pred ccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCc--cchhccCCCccEEEecCcccccc--cCccccC
Q 043372 158 LREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLP--EAVGNLSTRLRKLSVGNNQLFGN--IPSGLRN 233 (342)
Q Consensus 158 L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~ 233 (342)
|+.+.+.+..+.=. .....+..+|.++.++++.|+...... .......+.+++++...|..... .......
T Consensus 123 l~~lVLNgT~L~w~-----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWT-----QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred eEEEEEcCCCCChh-----hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 77776665543210 222345556666666666653321100 01111113455555555543211 1122233
Q ss_pred cCCCCEEEcCCCccccc-CCcccccccCcceEEccCCeeeeec--cccccCCCCccEEecCCcccccc
Q 043372 234 LVNLELLDLGDNQFIGR-IPESIGYLQKLQGLWLNGNKFLGEI--PSSIGNLASLTILDFSANLLEGS 298 (342)
Q Consensus 234 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~ 298 (342)
+|++..+-+..|++... .......+|.+.-|+++.+++. .+ ...+..++.|..|.++++++.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCccccc
Confidence 45555555555554321 1123334455555555555554 22 23344556666666666655543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=8.6e-09 Score=91.73 Aligned_cols=105 Identities=34% Similarity=0.323 Sum_probs=63.7
Q ss_pred CCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEec
Q 043372 211 TRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDF 290 (342)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 290 (342)
+.++.|+++.|++.+. +.+..++.|++|||++|.+.. +|..-..-.+|..|.+++|.+. .+ ..+.++.+|..||+
T Consensus 187 ~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccch
Confidence 5677777777777532 356667777777777777652 3322222233777777777664 21 33556677777777
Q ss_pred CCcccccc-cCccccCCCCCcEEEcCCCcCc
Q 043372 291 SANLLEGS-IPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 291 ~~n~~~~~-~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
++|-+.+- -...++.+..|+.|.+.|||+-
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77765531 1233344566777777777775
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=6.1e-07 Score=82.90 Aligned_cols=141 Identities=22% Similarity=0.254 Sum_probs=88.5
Q ss_pred cCCcccEEEeccCC-CCCCCccchhccCCCccEEEecCcccccc-cCccccCcCCCCEEEcCCCcccccCCcccccccCc
Q 043372 184 NTSRLELLEISDTN-CGGMLPEAVGNLSTRLRKLSVGNNQLFGN-IPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKL 261 (342)
Q Consensus 184 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 261 (342)
.-.+|+.|++++.. +...|+..++.+.|.|+.|.+++-.+... ......++|+|..|||+++.++.. ..++.+++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 33567777777753 44556667777777888888877665422 223345678888888888777633 456777788
Q ss_pred ceEEccCCeeee-eccccccCCCCccEEecCCcccccc------cCccccCCCCCcEEEcCCCcCccccchh
Q 043372 262 QGLWLNGNKFLG-EIPSSIGNLASLTILDFSANLLEGS------IPSSLGKCQNLISLNLSNNNLSGTIPTE 326 (342)
Q Consensus 262 ~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 326 (342)
+.|.+.+-.+.. .....+-++.+|+.||+|.-+.... -.++-..+|.|+.||.+++.+...+-+.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 888777766652 1112344677888888876543321 1233334788888888888776544433
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.11 E-value=1.2e-05 Score=58.57 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=41.3
Q ss_pred ccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCC
Q 043372 7 KLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSL 86 (342)
Q Consensus 7 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 86 (342)
.|.++++|+.+.+.. .+......+|.++++|+.+.+..+ +......+|.++++|+.+.+.+ .+.......+..++.|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 345555666666543 233344455555555666655553 4433444555555566665544 2322333444455555
Q ss_pred CEEeCcCCCCCCCCCccccCCCCCCcEEEcc
Q 043372 87 SVFDFPVNQLQGSFPSDLGFTLPNLELLNVA 117 (342)
Q Consensus 87 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 117 (342)
+.+.+..+ +. .++...+... +|+.+.+.
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 55555433 22 3333333333 45555444
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.8e-06 Score=47.77 Aligned_cols=37 Identities=43% Similarity=0.600 Sum_probs=25.1
Q ss_pred CCccEEecCCcccccccCccccCCCCCcEEEcCCCcCc
Q 043372 283 ASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 283 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
++|++|++++|+++ .++..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 45556777777777777777776
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.3e-07 Score=66.77 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=82.6
Q ss_pred CccEEEecCcccccccCcc---ccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEE
Q 043372 212 RLRKLSVGNNQLFGNIPSG---LRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTIL 288 (342)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 288 (342)
.+..+++++|.+. .+++. +.....|+.+++++|.+....+..-..++.++.+++++|.+. .+|..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 4566788888764 33333 334567777899999887433333445678889999999887 778778888999999
Q ss_pred ecCCcccccccCccccCCCCCcEEEcCCCcCccccchh
Q 043372 289 DFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE 326 (342)
Q Consensus 289 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 326 (342)
++++|++. ..|..+..+.++-.|+..++... .+|-.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 99999888 67888888888888888888877 45544
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=2.2e-06 Score=67.88 Aligned_cols=190 Identities=24% Similarity=0.298 Sum_probs=85.7
Q ss_pred CCCccEEEccCCcCcCCCCC-----ccccCcccEEEcccCCCCCCCCCc----hhhhhhhccCCcccEEEeccCCCCCCC
Q 043372 132 TSNLMTLAIGGNGFSGKVPS-----FENLHKLREVSISQNPLGNGEKDD----LEFVNSLVNTSRLELLEISDTNCGGML 202 (342)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~----~~~~~~l~~~~~L~~l~l~~~~~~~~~ 202 (342)
+..+.++++++|.+.+.... +.+-.+|+..+++.-.......+. .-....+-.||++++++++.|.+...+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 45556666666655442221 444455555555544322211110 112344556677777777766665554
Q ss_pred ccchhc---cCCCccEEEecCcccccc----cCccc---------cCcCCCCEEEcCCCccccc----CCcccccccCcc
Q 043372 203 PEAVGN---LSTRLRKLSVGNNQLFGN----IPSGL---------RNLVNLELLDLGDNQFIGR----IPESIGYLQKLQ 262 (342)
Q Consensus 203 ~~~~~~---~~~~L~~L~l~~~~~~~~----~~~~~---------~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~ 262 (342)
++.+.. -.+.+++|.+.+|..... +...+ ..-|.|+++++..|++..- ....+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 443221 124566777766654321 11111 1235566666666655310 011112223555
Q ss_pred eEEccCCeeeeeccc-----cccCCCCccEEecCCccccccc----CccccCCCCCcEEEcCCCcCcc
Q 043372 263 GLWLNGNKFLGEIPS-----SIGNLASLTILDFSANLLEGSI----PSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 263 ~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
.+.+..|.+-..-.. .+.-+.+|+.|++.+|.++-.. ...+..-+.|+.|.+..|-++.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 666655554321101 1123456666666666544211 1111112345666666665553
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.03 E-value=1.5e-07 Score=84.02 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=108.9
Q ss_pred ccCCCCcccEEEeeccccccC---c------ccc------------c-------cC---CCCCceeeccccccccCCchh
Q 043372 7 KLGSIPKLRILTVHANYLSGE---I------PSS------------F-------GN---LSSLEVLSATANQFVGRIPET 55 (342)
Q Consensus 7 ~l~~~~~L~~L~l~~~~~~~~---~------~~~------------~-------~~---~~~L~~L~l~~~~~~~~~~~~ 55 (342)
.+-.+..||+|.+.++.+... . ..- | ++ .-.|.+.+.++|.+. ....+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHH
Confidence 456788999999999877421 0 000 0 00 124666666666655 23335
Q ss_pred hcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCc
Q 043372 56 LRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNL 135 (342)
Q Consensus 56 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 135 (342)
+.-++.|+.|+|++|++.+.. .+..+++|++||++.|.+. .+|.-.-..+ +|+.|.+++|.+.. + ..+.++.+|
T Consensus 183 Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t-L-~gie~LksL 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT-L-RGIENLKSL 256 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh-h-hhHHhhhhh
Confidence 666788889999999887432 7788899999999998886 6665433333 48889998888762 2 346678888
Q ss_pred cEEEccCCcCcCCCCC--ccccCcccEEEcccCCCCCCC
Q 043372 136 MTLAIGGNGFSGKVPS--FENLHKLREVSISQNPLGNGE 172 (342)
Q Consensus 136 ~~L~l~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~ 172 (342)
+.|++++|-+.+.... +..+..|+.|++.+|++....
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999988877765443 566778888889888876543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=1.3e-07 Score=66.84 Aligned_cols=139 Identities=22% Similarity=0.230 Sum_probs=88.4
Q ss_pred cccEEEeccCCCCCCCccc---hhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcce
Q 043372 187 RLELLEISDTNCGGMLPEA---VGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQG 263 (342)
Q Consensus 187 ~L~~l~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 263 (342)
.+..++++.|.+-. +... +... ..++..++++|.+..........++.++.+++++|.+. ..|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~-~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKG-YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCC-ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 34556666665421 1222 2222 35667788888877444444455668888888888888 56666888888888
Q ss_pred EEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCc
Q 043372 264 LWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL 330 (342)
Q Consensus 264 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l 330 (342)
++++.|.+. ..|..+..+.++-.|+..+|.+. .++-.+-.-......++.++++.+.-+..+..+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 888888887 66666666777778888777766 455444333344455567777765555444333
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=1.3e-05 Score=60.77 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=64.1
Q ss_pred cCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCC-CccccCCCCccEE
Q 043372 60 KRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPI-PASISNTSNLMTL 138 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 138 (342)
.....++|++|.+. ....|..++.|.+|.++.|+++ .+...+...+|+|..|.+.+|.+.... -..+..||+|++|
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34556666666653 2235566667777777777776 555555555677777777777665221 1234567777777
Q ss_pred EccCCcCcCCCCC----ccccCcccEEEcccC
Q 043372 139 AIGGNGFSGKVPS----FENLHKLREVSISQN 166 (342)
Q Consensus 139 ~l~~~~~~~~~~~----~~~~~~L~~l~l~~~ 166 (342)
.+-+|+......+ +..+|+|+.|++...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777776654333 566677777776654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=1.3e-05 Score=60.77 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=67.7
Q ss_pred cEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccC
Q 043372 63 RIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGG 142 (342)
Q Consensus 63 ~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 142 (342)
+.+++++.++. .....-.-......+++++|++. .++ .+- .++.|..|.+.+|.+..+.|..-..+|+|+.|.+.+
T Consensus 22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~-~l~-~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR-KLD-NLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-chhhccccccccceecccccchh-hcc-cCC-CccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 44555555554 11111112334556677776653 221 222 466777777777777655554444566777777777
Q ss_pred CcCcCCCC--CccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEecc
Q 043372 143 NGFSGKVP--SFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISD 195 (342)
Q Consensus 143 ~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 195 (342)
|.+..... .+..+|.|+.|.+-+|+....... -..-+..+|+|+++++.+
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~Y---R~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNY---RLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCc---eeEEEEecCcceEeehhh
Confidence 76655432 266667777777766665542211 122344556666666554
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=8.4e-06 Score=46.34 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=18.0
Q ss_pred cccEEEeeccccccCccccccCCCCCceeeccccccc
Q 043372 13 KLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFV 49 (342)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 49 (342)
+||+|++++|.++. .+..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555552 2333555555555555555554
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.94 E-value=2.8e-05 Score=56.53 Aligned_cols=106 Identities=24% Similarity=0.248 Sum_probs=41.3
Q ss_pred ccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCC
Q 043372 30 SSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLP 109 (342)
Q Consensus 30 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 109 (342)
.+|.++.+|+.+.+.. .+..+...+|.++.+|+.+.+.++ +.......+..++.++.+.+.. .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3455555666666553 344444445556656666665553 4433344555555555555543 222 33444443455
Q ss_pred CCcEEEccCCccCCCCCccccCCCCccEEEcc
Q 043372 110 NLELLNVADNQFAGPIPASISNTSNLMTLAIG 141 (342)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 141 (342)
+|+.+.+..+ +.......|.++ .++.+.+.
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555555432 221222334444 55555444
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=0.00018 Score=61.79 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=28.5
Q ss_pred hcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCC
Q 043372 56 LRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADN 119 (342)
Q Consensus 56 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 119 (342)
+..+.+++.|++++|.++ .+|. --++|+.|.++++.-...+|..+ .++|++|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 444566667776666555 3331 11246666665543222444322 345666666555
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=3.5e-06 Score=77.96 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=6.0
Q ss_pred CCccEEEecCccc
Q 043372 211 TRLRKLSVGNNQL 223 (342)
Q Consensus 211 ~~L~~L~l~~~~~ 223 (342)
|+|+.|+.+++.+
T Consensus 250 peLrfLDcSgTdi 262 (699)
T KOG3665|consen 250 PELRFLDCSGTDI 262 (699)
T ss_pred ccccEEecCCcch
Confidence 3444455444443
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=0.00014 Score=62.51 Aligned_cols=136 Identities=12% Similarity=0.120 Sum_probs=71.3
Q ss_pred CCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEeccc-ccccccCccccCCCCCC
Q 043372 9 GSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGIN-KLSGEIPFSIYNLSSLS 87 (342)
Q Consensus 9 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~L~ 87 (342)
..+.++++|++++|.++.. |. -..+|++|.+++|.-....|..+. .+|++|.+++| .+. .+| +.|+
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccc
Confidence 3467788888888876633 31 124688888877653334444443 57888888877 443 333 2466
Q ss_pred EEeCcCCCCCCCCCccccCCCCCCcEEEccCCccC--CCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEccc
Q 043372 88 VFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFA--GPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQ 165 (342)
Q Consensus 88 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~ 165 (342)
.|++..+... .++ .-.++|+.|.+.++... ...+.. -.++|++|.+.+|.....+..+ ..+|+.|.++.
T Consensus 116 ~L~L~~n~~~-~L~----~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATD-SIK----NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKL--PESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCc-ccc----cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccc--cccCcEEEecc
Confidence 6666554332 111 11345666666432211 011111 1256777777776644322211 24666666655
Q ss_pred C
Q 043372 166 N 166 (342)
Q Consensus 166 ~ 166 (342)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.42 E-value=7.7e-06 Score=73.99 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=68.9
Q ss_pred CCCCCceeeccccc-cccCC-chhhcCccCccEEEeccc-c-cccc---cCccccCCCCCCEEeCcCCC-CCCCCCcccc
Q 043372 34 NLSSLEVLSATANQ-FVGRI-PETLRDIKRMRIIAFGIN-K-LSGE---IPFSIYNLSSLSVFDFPVNQ-LQGSFPSDLG 105 (342)
Q Consensus 34 ~~~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~l~~~-~-i~~~---~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~ 105 (342)
.++.|+.+.+..+. +.+.. -.....++.|+.|+++++ . +... .......+++|+.++++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36777777777664 33221 223455777777777663 1 1100 11233455777777777766 4433333344
Q ss_pred CCCCCCcEEEccCCc-cCCC-CCccccCCCCccEEEccCCcCcC---CCCCccccCcccEEEcc
Q 043372 106 FTLPNLELLNVADNQ-FAGP-IPASISNTSNLMTLAIGGNGFSG---KVPSFENLHKLREVSIS 164 (342)
Q Consensus 106 ~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~ 164 (342)
..+++|++|.+..+. ++.. +......++.|++|+++++.... ......++++++.+.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 346778887766555 2211 11223467778888887665431 11113445655555443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=2.4e-05 Score=70.81 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=49.7
Q ss_pred CCCCcEEEccCCccCCC--CCccccCCCCccEEEccCC-cCcCCC-----CCccccCcccEEEcccCC-CCCCCCCchhh
Q 043372 108 LPNLELLNVADNQFAGP--IPASISNTSNLMTLAIGGN-GFSGKV-----PSFENLHKLREVSISQNP-LGNGEKDDLEF 178 (342)
Q Consensus 108 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~~-----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~ 178 (342)
.+.|+.+.+..+..... .......++.|++|+++++ ...... .....+++++.++++++. +.+. .+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~-----~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI-----GL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-----hH
Confidence 45555555554432211 1122345566666666542 111111 113444556666666555 2221 11
Q ss_pred hhhhccCCcccEEEeccCC-CCCCCccchhccCCCccEEEecCccc
Q 043372 179 VNSLVNTSRLELLEISDTN-CGGMLPEAVGNLSTRLRKLSVGNNQL 223 (342)
Q Consensus 179 ~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~ 223 (342)
......|++|+.+.+..|. +++.....+...++.|++|+++.|..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 1112235666666655554 34433344444445566666665543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=9.7e-05 Score=58.49 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=36.6
Q ss_pred hcCccCccEEEeccc--ccccccCccccCCCCCCEEeCcCCCCCC--CCCccccCCCCCCcEEEccCCccCCCC---Ccc
Q 043372 56 LRDIKRMRIIAFGIN--KLSGEIPFSIYNLSSLSVFDFPVNQLQG--SFPSDLGFTLPNLELLNVADNQFAGPI---PAS 128 (342)
Q Consensus 56 ~~~l~~L~~L~l~~~--~i~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~ 128 (342)
|..+++||+|.++.| .+..-++-....+|+|+++++++|.+.. ++... . .+.+|..|++.+|...... ...
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~-~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-K-ELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-h-hhcchhhhhcccCCccccccHHHHH
Confidence 444555555555555 3332222222334555555555555431 11111 1 2444555555555433211 123
Q ss_pred ccCCCCccEEEcc
Q 043372 129 ISNTSNLMTLAIG 141 (342)
Q Consensus 129 ~~~~~~L~~L~l~ 141 (342)
|.-+++|++++-.
T Consensus 139 f~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 139 FLLLPSLKYLDGC 151 (260)
T ss_pred HHHhhhhcccccc
Confidence 4445666666543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00038 Score=55.25 Aligned_cols=85 Identities=28% Similarity=0.350 Sum_probs=43.8
Q ss_pred cCCCCEEEcCCCcccccCCcccccccCcceEEccCC--eeeeeccccccCCCCccEEecCCccccc-ccCccccCCCCCc
Q 043372 234 LVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGN--KFLGEIPSSIGNLASLTILDFSANLLEG-SIPSSLGKCQNLI 310 (342)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~ 310 (342)
+..|+.+.+.+..++. -..++.+|+|++|.++.| ++.+.+......+|+|+++++++|++.. +....+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444555555554432 123455566666666666 4433333333445666666666666552 1112233345566
Q ss_pred EEEcCCCcCc
Q 043372 311 SLNLSNNNLS 320 (342)
Q Consensus 311 ~l~l~~~~~~ 320 (342)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666666655
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=1.7e-05 Score=63.23 Aligned_cols=101 Identities=23% Similarity=0.203 Sum_probs=69.8
Q ss_pred CCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEeccccccccc-CccccCCCCCCEE
Q 043372 11 IPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEI-PFSIYNLSSLSVF 89 (342)
Q Consensus 11 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~l 89 (342)
+.+.++|++++|.++++ .-...++.|++|.|+-|.|+... .+..|++|++|.|..|.|.+.. .+.++++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45678889998888643 22456889999999999888543 4788899999999999887432 2356678888888
Q ss_pred eCcCCCCCCCCCccc----cCCCCCCcEEE
Q 043372 90 DFPVNQLQGSFPSDL----GFTLPNLELLN 115 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~----~~~~~~L~~L~ 115 (342)
=+..|.-.+.-+.+. ...+|+|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 776665443333221 11367777775
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=4e-05 Score=61.18 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=32.6
Q ss_pred CccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCC-CccccCCCCccEEE
Q 043372 61 RMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPI-PASISNTSNLMTLA 139 (342)
Q Consensus 61 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 139 (342)
+.+.|++.+|.+.++ .....|+.|+.|.++.|.++ ++.. +..+.+|++|+|..|.+.... ..-+.++|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344444444444321 12234444444444444443 2221 113444555555444443110 01134455555555
Q ss_pred ccCCcC
Q 043372 140 IGGNGF 145 (342)
Q Consensus 140 l~~~~~ 145 (342)
+..|+-
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.49 E-value=0.0086 Score=28.11 Aligned_cols=18 Identities=50% Similarity=0.744 Sum_probs=9.5
Q ss_pred CcEEEcCCCcCccccchhh
Q 043372 309 LISLNLSNNNLSGTIPTEV 327 (342)
Q Consensus 309 L~~l~l~~~~~~~~~~~~~ 327 (342)
|++|++++|.++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 455443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.80 E-value=0.027 Score=26.38 Aligned_cols=12 Identities=42% Similarity=0.482 Sum_probs=4.8
Q ss_pred cceEEccCCeee
Q 043372 261 LQGLWLNGNKFL 272 (342)
Q Consensus 261 L~~L~l~~~~~~ 272 (342)
|++|++++|++.
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444333
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.0059 Score=46.77 Aligned_cols=84 Identities=24% Similarity=0.252 Sum_probs=58.2
Q ss_pred CCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeecc-cccc-CCCCccEEecCCc-ccccccCccccCCCCCcEE
Q 043372 236 NLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIP-SSIG-NLASLTILDFSAN-LLEGSIPSSLGKCQNLISL 312 (342)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~l 312 (342)
.++.++-+++.+..+.-+.+..++.++.+.+.+|.-.+.+. +-++ -.++|+.|++++| +|++....++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46778888888776666677778888888888886543321 1111 3478888888887 5665556677778888888
Q ss_pred EcCCCcC
Q 043372 313 NLSNNNL 319 (342)
Q Consensus 313 ~l~~~~~ 319 (342)
.+.+=+-
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 7776543
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.005 Score=47.14 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=53.4
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccc-cCccc-cCCCCCCEEeCcCC-CCCCCCCccccCCCCCCc
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGE-IPFSI-YNLSSLSVFDFPVN-QLQGSFPSDLGFTLPNLE 112 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~-~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~~L~ 112 (342)
..++.++-+++.|.......+.+++.++.|.+.+|+--+. .-+-+ .-.++|+.|++++| +|++.--..+. .+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 4577788888888777777788888888888887763321 11111 14578888888876 45422222222 578888
Q ss_pred EEEccCC
Q 043372 113 LLNVADN 119 (342)
Q Consensus 113 ~L~l~~~ 119 (342)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8877654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.78 E-value=0.052 Score=23.57 Aligned_cols=13 Identities=62% Similarity=0.838 Sum_probs=5.4
Q ss_pred CCcEEEcCCCcCc
Q 043372 308 NLISLNLSNNNLS 320 (342)
Q Consensus 308 ~L~~l~l~~~~~~ 320 (342)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.97 E-value=0.00048 Score=61.30 Aligned_cols=183 Identities=24% Similarity=0.327 Sum_probs=93.4
Q ss_pred ccEEEccCCcCcCCCCC-----ccccCcccEEEcccCCCCCCCCCchhhhhhhccC-CcccEEEeccCCCCCCC----cc
Q 043372 135 LMTLAIGGNGFSGKVPS-----FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNT-SRLELLEISDTNCGGML----PE 204 (342)
Q Consensus 135 L~~L~l~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~~~----~~ 204 (342)
+..+.+.+|.+.+.... +...+.|+.++++++.+.+.. .......+... ..++++.+..|.....- ..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g--~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEG--ARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHh--HHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 66667777766553222 566677777888777776321 11333344443 55666666666554332 22
Q ss_pred chhccCCCccEEEecCcccccc----cCcccc----CcCCCCEEEcCCCccccc----CCcccccccC-cceEEccCCee
Q 043372 205 AVGNLSTRLRKLSVGNNQLFGN----IPSGLR----NLVNLELLDLGDNQFIGR----IPESIGYLQK-LQGLWLNGNKF 271 (342)
Q Consensus 205 ~~~~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~ 271 (342)
.+.. ...++.++++.|.+... .+..+. ...++++|.+.+|.++.. ....+...+. +..+++..|.+
T Consensus 167 ~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 2222 24566666666654211 122222 245566666666655421 1112233333 55566666655
Q ss_pred eee----ccccccCC-CCccEEecCCcccccc----cCccccCCCCCcEEEcCCCcCc
Q 043372 272 LGE----IPSSIGNL-ASLTILDFSANLLEGS----IPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 272 ~~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
.+. ....+..+ +.+++++++.|.+++. +...+..++.++.+.+..|++.
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 432 12223333 4566677776666532 2344444566666666666665
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.37 E-value=0.00039 Score=61.91 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=16.9
Q ss_pred CCEEeCcCCCCCCCCCcccc---CCCCCCcEEEccCCccC
Q 043372 86 LSVFDFPVNQLQGSFPSDLG---FTLPNLELLNVADNQFA 122 (342)
Q Consensus 86 L~~l~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 122 (342)
+..+.+.+|.+.......+. ...+.|+.|+++++.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 55555555555432211111 13455555666555544
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.23 E-value=0.25 Score=24.09 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=7.2
Q ss_pred CCceeeccccccccC
Q 043372 37 SLEVLSATANQFVGR 51 (342)
Q Consensus 37 ~L~~L~l~~~~~~~~ 51 (342)
+|++|++++|++..+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 445555555544433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.23 E-value=0.25 Score=24.09 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=7.2
Q ss_pred CCceeeccccccccC
Q 043372 37 SLEVLSATANQFVGR 51 (342)
Q Consensus 37 ~L~~L~l~~~~~~~~ 51 (342)
+|++|++++|++..+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 445555555544433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.89 E-value=0.011 Score=46.42 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
.....+.||++.+.+. .....|+-+..+..|+++.+++. ..|..+.....++.+++..|+.. ..|.+++..|+++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3444445555554443 12233344444555555555544 23333444445555555555444 445555555555555
Q ss_pred eCcCCC
Q 043372 90 DFPVNQ 95 (342)
Q Consensus 90 ~l~~~~ 95 (342)
+.-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 554444
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.86 E-value=0.1 Score=24.94 Aligned_cols=15 Identities=47% Similarity=0.700 Sum_probs=6.8
Q ss_pred CCCcEEEcCCCcCcc
Q 043372 307 QNLISLNLSNNNLSG 321 (342)
Q Consensus 307 ~~L~~l~l~~~~~~~ 321 (342)
++|+.|++++|++..
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.23 E-value=0.027 Score=44.36 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=72.5
Q ss_pred cccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCC
Q 043372 230 GLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNL 309 (342)
Q Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 309 (342)
.+..+...+.||++.+... ..-..++.+..+..++++.+++. ..|..+.....+.+++..+|..+ ..|..+.+.|.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4455678889999988765 23345666788999999999887 77777777777888888888877 789999999999
Q ss_pred cEEEcCCCcCcccc
Q 043372 310 ISLNLSNNNLSGTI 323 (342)
Q Consensus 310 ~~l~l~~~~~~~~~ 323 (342)
+.++..++++...+
T Consensus 114 k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 114 KKNEQKKTEFFRKL 127 (326)
T ss_pred chhhhccCcchHHH
Confidence 99999999987433
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=71.92 E-value=2.7 Score=20.35 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=11.5
Q ss_pred CCCCcEEEcCCCcC
Q 043372 306 CQNLISLNLSNNNL 319 (342)
Q Consensus 306 ~~~L~~l~l~~~~~ 319 (342)
|++|++|++++|+.
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 57889999999873
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.45 E-value=3 Score=20.41 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=11.2
Q ss_pred CCCcEEEcCCCcCccccch
Q 043372 307 QNLISLNLSNNNLSGTIPT 325 (342)
Q Consensus 307 ~~L~~l~l~~~~~~~~~~~ 325 (342)
++|+.|++++|.++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35667777777766 4553
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.81 E-value=1.6 Score=21.76 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=8.1
Q ss_pred CcccEEEeeccccc
Q 043372 12 PKLRILTVHANYLS 25 (342)
Q Consensus 12 ~~L~~L~l~~~~~~ 25 (342)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45566666666554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.69 E-value=8 Score=18.90 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=10.9
Q ss_pred CCCcEEEcCCCcCc
Q 043372 307 QNLISLNLSNNNLS 320 (342)
Q Consensus 307 ~~L~~l~l~~~~~~ 320 (342)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56788888888876
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.41 E-value=4.9 Score=36.35 Aligned_cols=65 Identities=23% Similarity=0.162 Sum_probs=35.0
Q ss_pred cCcCCCCEEEcCCCcccccC--CcccccccCcceEEccCC--eeeeec-cccccCCCCccEEecCCccccc
Q 043372 232 RNLVNLELLDLGDNQFIGRI--PESIGYLQKLQGLWLNGN--KFLGEI-PSSIGNLASLTILDFSANLLEG 297 (342)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~--~~~~~~-~~~~~~~~~L~~L~l~~n~~~~ 297 (342)
.+.+.+..+.+++|++.... ...-...|+|..|+|++| .+.... ..-+.. ..|++|-+.+|++-.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 34566777777777764311 112233577778888777 222110 111222 347777777776553
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.31 E-value=5.7 Score=35.94 Aligned_cols=11 Identities=9% Similarity=0.410 Sum_probs=5.2
Q ss_pred cCccEEEeccc
Q 043372 60 KRMRIIAFGIN 70 (342)
Q Consensus 60 ~~L~~L~l~~~ 70 (342)
|+|+.|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44444444444
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.22 E-value=1e+02 Score=27.83 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=51.9
Q ss_pred CCccEEEecCcccccccCc--cccCcCCCCEEEcCCCccc-----ccCCccc----ccccCcceEEccCCeeeee---cc
Q 043372 211 TRLRKLSVGNNQLFGNIPS--GLRNLVNLELLDLGDNQFI-----GRIPESI----GYLQKLQGLWLNGNKFLGE---IP 276 (342)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-----~~~~~~~----~~~~~L~~L~l~~~~~~~~---~~ 276 (342)
.++++|.+..++..++.-. .....+..+.+++....-. ....... ....-+..+.++.|..... ..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 3577777776665443222 2233455666666443210 0000000 1122466777777766521 11
Q ss_pred ccccCCCCccEEecCCcccccc----cCccccCCCCCcEEEcCCCc
Q 043372 277 SSIGNLASLTILDFSANLLEGS----IPSSLGKCQNLISLNLSNNN 318 (342)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~ 318 (342)
.....-+.+..|++++|..... ++....-...++.+..+.|-
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 2234456778888888866532 33333333345555555443
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.82 E-value=1.2e+02 Score=16.83 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=3.3
Q ss_pred CCccEEEe
Q 043372 211 TRLRKLSV 218 (342)
Q Consensus 211 ~~L~~L~l 218 (342)
+++++|.+
T Consensus 34 ~sl~~L~f 41 (44)
T PF05725_consen 34 NSLKSLSF 41 (44)
T ss_pred CCceEEEe
Confidence 34444443
Done!