Query 043372
Match_columns 342
No_of_seqs 164 out of 2182
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 07:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.2E-41 7.5E-46 318.4 25.7 332 2-342 283-714 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.3E-41 2.8E-45 314.5 26.1 330 3-342 262-690 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 1.6E-38 5.6E-43 282.7 26.3 336 3-342 24-405 (455)
4 4eco_A Uncharacterized protein 100.0 8E-39 2.7E-43 294.7 20.1 323 4-342 198-597 (636)
5 3t6q_A CD180 antigen; protein- 100.0 3E-37 1E-41 284.1 27.4 138 5-143 50-189 (606)
6 4eco_A Uncharacterized protein 100.0 1.1E-37 3.6E-42 287.2 20.8 302 4-321 239-601 (636)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.2E-37 1.8E-41 282.5 24.5 116 6-122 50-166 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.7E-36 9.2E-41 277.7 28.4 330 4-342 73-510 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-36 5.5E-41 279.2 26.6 143 3-148 25-168 (606)
10 3v47_A TOLL-like receptor 5B a 100.0 1.4E-36 4.7E-41 270.2 24.9 320 4-324 46-412 (455)
11 2id5_A Lingo-1, leucine rich r 100.0 1.8E-36 6.3E-41 270.9 23.4 310 3-322 25-335 (477)
12 4ecn_A Leucine-rich repeat pro 100.0 1.1E-36 3.8E-41 285.5 22.6 327 4-342 440-837 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 5.6E-36 1.9E-40 273.8 26.1 336 3-342 21-528 (570)
14 3o6n_A APL1; leucine-rich repe 100.0 6.1E-36 2.1E-40 260.6 24.4 307 10-342 43-349 (390)
15 2id5_A Lingo-1, leucine rich r 100.0 1.3E-35 4.3E-40 265.5 26.5 316 15-342 14-330 (477)
16 4ecn_A Leucine-rich repeat pro 100.0 4E-36 1.4E-40 281.7 24.2 317 3-330 480-850 (876)
17 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-34 5.1E-39 269.5 28.9 336 3-342 18-440 (680)
18 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-34 5.6E-39 269.2 27.2 114 7-121 44-157 (680)
19 2z7x_B TOLL-like receptor 1, v 100.0 9.7E-35 3.3E-39 262.5 24.3 321 3-342 14-478 (520)
20 4fmz_A Internalin; leucine ric 100.0 3.5E-34 1.2E-38 245.8 26.4 304 8-342 40-343 (347)
21 3oja_B Anopheles plasmodium-re 100.0 9.6E-35 3.3E-39 266.1 24.4 307 10-342 49-355 (597)
22 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-35 7.8E-40 268.5 20.0 152 185-342 333-507 (549)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-34 1.5E-38 260.4 27.4 324 3-342 45-507 (562)
24 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-34 1.3E-38 272.0 26.2 309 3-320 18-375 (844)
25 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-34 9.9E-39 261.2 22.8 331 3-342 19-483 (549)
26 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-34 2E-38 257.4 23.2 315 15-342 3-454 (520)
27 1o6v_A Internalin A; bacterial 100.0 3.4E-33 1.2E-37 248.7 27.7 306 3-342 60-385 (466)
28 2z63_A TOLL-like receptor 4, v 100.0 1.1E-33 3.9E-38 258.5 23.3 319 5-325 45-536 (570)
29 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-33 5.7E-38 267.5 24.9 331 4-342 40-436 (844)
30 4g8a_A TOLL-like receptor 4; l 100.0 7E-33 2.4E-37 256.4 27.7 335 3-342 45-577 (635)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-33 1.7E-37 253.3 25.1 320 10-342 29-483 (562)
32 4fmz_A Internalin; leucine ric 100.0 3E-32 1E-36 233.7 26.8 289 3-320 58-346 (347)
33 1xku_A Decorin; proteoglycan, 100.0 1E-31 3.6E-36 228.7 27.2 287 13-342 32-329 (330)
34 2ft3_A Biglycan; proteoglycan, 100.0 3.5E-32 1.2E-36 231.7 23.9 286 13-342 34-330 (332)
35 3o6n_A APL1; leucine-rich repe 100.0 1.4E-31 4.9E-36 233.0 25.3 285 34-342 43-328 (390)
36 1o6v_A Internalin A; bacterial 100.0 3.3E-31 1.1E-35 235.9 26.7 299 10-342 44-363 (466)
37 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-31 1.2E-35 234.0 25.7 300 5-342 35-349 (457)
38 3oja_B Anopheles plasmodium-re 100.0 7.6E-32 2.6E-36 246.9 22.0 296 3-323 65-361 (597)
39 4g8a_A TOLL-like receptor 4; l 100.0 5.3E-30 1.8E-34 237.1 25.3 317 5-323 69-583 (635)
40 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-29 5.1E-34 223.7 26.3 280 3-321 56-353 (457)
41 1ogq_A PGIP-2, polygalacturona 100.0 9.7E-31 3.3E-35 220.6 17.4 250 36-320 50-304 (313)
42 1xku_A Decorin; proteoglycan, 100.0 2.1E-29 7.1E-34 214.4 24.2 276 3-318 45-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-29 4.1E-34 216.1 21.7 275 3-318 47-331 (332)
44 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-30 6.3E-35 218.9 15.8 248 60-342 50-301 (313)
45 1jl5_A Outer protein YOPM; leu 100.0 2.5E-29 8.7E-34 222.0 20.6 307 2-342 24-406 (454)
46 1z7x_W Ribonuclease inhibitor; 100.0 8.5E-33 2.9E-37 246.3 -4.7 332 8-342 24-408 (461)
47 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-31 9.5E-36 236.5 -5.1 315 4-322 48-413 (461)
48 2z80_A TOLL-like receptor 2, v 100.0 1.4E-27 4.9E-32 205.0 17.4 276 10-297 29-315 (353)
49 2z80_A TOLL-like receptor 2, v 100.0 1.3E-27 4.5E-32 205.2 16.3 279 34-324 29-318 (353)
50 2z66_A Variable lymphocyte rec 100.0 6.2E-27 2.1E-31 197.1 19.1 251 63-323 10-264 (306)
51 4fcg_A Uncharacterized protein 100.0 5.2E-27 1.8E-31 198.9 18.5 233 82-320 79-314 (328)
52 2z66_A Variable lymphocyte rec 100.0 5.8E-27 2E-31 197.2 18.4 280 39-331 10-298 (306)
53 1jl5_A Outer protein YOPM; leu 99.9 1.5E-26 5.2E-31 204.3 21.7 295 5-342 5-347 (454)
54 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.2E-31 196.6 18.7 222 60-294 81-312 (328)
55 3zyi_A Leucine-rich repeat-con 99.9 4.4E-26 1.5E-30 202.1 20.7 246 14-272 56-303 (452)
56 3zyi_A Leucine-rich repeat-con 99.9 8.8E-26 3E-30 200.1 22.6 227 60-295 75-302 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 1E-25 3.5E-30 199.1 22.3 245 14-271 45-291 (440)
58 3zyj_A Leucine-rich repeat-con 99.9 7.1E-26 2.4E-30 200.1 20.6 235 3-248 57-292 (440)
59 3g06_A SSPH2 (leucine-rich rep 99.9 4E-25 1.4E-29 201.1 25.7 268 12-330 40-307 (622)
60 1ozn_A Reticulon 4 receptor; N 99.9 3.8E-26 1.3E-30 190.2 16.9 223 15-272 14-238 (285)
61 1ozn_A Reticulon 4 receptor; N 99.9 4.3E-26 1.5E-30 189.9 17.2 267 39-342 14-284 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.9 5.9E-27 2E-31 197.9 8.5 261 37-317 11-272 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-27 1.1E-31 199.5 6.5 264 13-298 11-278 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-23 4.6E-28 191.0 27.4 255 36-342 40-294 (622)
65 1wwl_A Monocyte differentiatio 99.9 6.3E-26 2.1E-30 191.2 9.2 252 31-321 38-310 (312)
66 3ogk_B Coronatine-insensitive 99.9 1.2E-27 4.2E-32 219.5 -1.4 152 10-164 162-326 (592)
67 1wwl_A Monocyte differentiatio 99.9 7.1E-26 2.4E-30 190.9 7.7 250 8-297 39-310 (312)
68 3oja_A Leucine-rich immune mol 99.9 1.1E-24 3.9E-29 194.1 12.8 238 58-315 32-270 (487)
69 3oja_A Leucine-rich immune mol 99.9 6.5E-25 2.2E-29 195.7 10.3 237 34-292 32-271 (487)
70 3ogk_B Coronatine-insensitive 99.9 7.1E-26 2.4E-30 207.8 0.1 324 10-342 110-523 (592)
71 2z62_A TOLL-like receptor 4, v 99.9 1.3E-22 4.3E-27 168.1 19.5 207 85-324 29-241 (276)
72 2p1m_B Transport inhibitor res 99.9 1.9E-26 6.4E-31 211.8 -5.6 325 9-342 102-516 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 2.1E-22 7E-27 166.8 17.7 208 36-249 28-238 (276)
74 2o6q_A Variable lymphocyte rec 99.9 1.7E-21 6E-26 160.6 22.3 199 86-295 18-217 (270)
75 1p9a_G Platelet glycoprotein I 99.9 1.2E-21 4E-26 163.0 19.7 203 80-296 6-208 (290)
76 2o6q_A Variable lymphocyte rec 99.9 1.5E-21 5.2E-26 160.9 19.7 205 109-323 16-221 (270)
77 3rfs_A Internalin B, repeat mo 99.9 4.7E-22 1.6E-26 164.1 15.0 227 61-332 20-247 (272)
78 1p9a_G Platelet glycoprotein I 99.9 2E-21 6.7E-26 161.6 18.3 202 107-322 8-210 (290)
79 3rfs_A Internalin B, repeat mo 99.9 3.7E-21 1.3E-25 158.8 15.7 183 132-324 40-222 (272)
80 2xwt_C Thyrotropin receptor; s 99.9 3.6E-21 1.2E-25 155.8 15.3 196 37-245 32-236 (239)
81 3goz_A Leucine-rich repeat-con 99.9 3.3E-23 1.1E-27 178.3 2.7 228 17-246 3-264 (362)
82 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4.1E-27 174.8 5.7 256 41-298 3-299 (362)
83 2ast_B S-phase kinase-associat 99.9 1E-22 3.5E-27 173.6 4.7 255 37-305 48-315 (336)
84 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.9E-27 173.4 4.6 254 60-328 47-314 (336)
85 2p1m_B Transport inhibitor res 99.9 6.8E-24 2.3E-28 194.7 -3.3 319 10-333 128-533 (594)
86 2ca6_A RAN GTPase-activating p 99.9 3.2E-23 1.1E-27 180.0 0.8 244 53-323 25-319 (386)
87 2ca6_A RAN GTPase-activating p 99.9 4.8E-23 1.6E-27 178.9 1.0 249 75-342 23-313 (386)
88 3m19_A Variable lymphocyte rec 99.9 4.2E-20 1.4E-24 150.6 18.2 179 12-200 14-193 (251)
89 2xwt_C Thyrotropin receptor; s 99.8 2.1E-20 7.1E-25 151.4 13.9 198 60-293 31-236 (239)
90 1h6u_A Internalin H; cell adhe 99.8 4E-20 1.4E-24 155.2 15.9 195 80-297 37-231 (308)
91 1h6u_A Internalin H; cell adhe 99.8 6E-20 2.1E-24 154.2 16.0 192 34-248 39-230 (308)
92 4glp_A Monocyte differentiatio 99.8 1.8E-20 6.3E-25 157.6 12.5 204 60-297 91-308 (310)
93 3m19_A Variable lymphocyte rec 99.8 2E-19 6.9E-24 146.6 17.7 178 110-321 15-193 (251)
94 4glp_A Monocyte differentiatio 99.8 3.3E-20 1.1E-24 156.1 10.8 228 61-321 65-308 (310)
95 3sb4_A Hypothetical leucine ri 99.8 4.3E-19 1.5E-23 150.5 13.5 294 2-337 13-326 (329)
96 4ay9_X Follicle-stimulating ho 99.8 3.3E-18 1.1E-22 146.3 18.6 240 15-293 12-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 6.6E-18 2.2E-22 144.5 18.7 229 3-245 23-256 (350)
98 2o6s_A Variable lymphocyte rec 99.8 1.5E-18 5.2E-23 137.2 12.5 178 15-209 10-188 (208)
99 2o6s_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 135.1 14.5 161 60-235 28-189 (208)
100 3cvr_A Invasion plasmid antige 99.8 1.7E-17 5.8E-22 149.3 17.7 186 61-305 60-252 (571)
101 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 3.9E-22 134.0 14.6 152 14-170 21-173 (229)
102 2v9t_B SLIT homolog 2 protein 99.8 8.3E-18 2.8E-22 133.9 13.6 152 15-170 14-166 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 1.2E-17 4.2E-22 133.0 14.5 141 3-146 25-165 (220)
104 1h6t_A Internalin B; cell adhe 99.8 6.7E-18 2.3E-22 140.4 12.6 170 34-224 44-213 (291)
105 4ezg_A Putative uncharacterize 99.8 8.3E-18 2.9E-22 131.7 12.3 151 10-168 42-193 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-17 8.8E-22 131.1 14.7 156 159-324 14-170 (220)
107 3sb4_A Hypothetical leucine ri 99.7 7.9E-18 2.7E-22 142.8 11.4 265 35-342 24-307 (329)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-17 9E-22 131.0 12.9 153 14-170 13-167 (220)
109 4ezg_A Putative uncharacterize 99.7 3E-17 1E-21 128.5 12.3 154 153-320 41-194 (197)
110 1h6t_A Internalin B; cell adhe 99.7 4.4E-17 1.5E-21 135.5 13.9 186 64-272 28-213 (291)
111 2xot_A Amphoterin-induced prot 99.7 1.8E-17 6.1E-22 142.3 11.6 152 15-170 21-177 (361)
112 1m9s_A Internalin B; cell inva 99.7 5.5E-17 1.9E-21 147.5 15.1 191 36-249 21-211 (605)
113 3e6j_A Variable lymphocyte rec 99.7 9.8E-17 3.3E-21 128.6 14.7 157 157-324 20-176 (229)
114 3cvr_A Invasion plasmid antige 99.7 1.4E-16 4.8E-21 143.4 16.2 184 37-255 60-250 (571)
115 1m9s_A Internalin B; cell inva 99.7 1.4E-16 4.7E-21 144.9 15.5 192 60-274 21-212 (605)
116 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.8E-21 137.3 13.9 177 136-321 21-203 (361)
117 1xeu_A Internalin C; cellular 99.7 9E-17 3.1E-21 131.6 8.2 146 11-169 18-163 (263)
118 2ell_A Acidic leucine-rich nuc 99.7 1.9E-16 6.4E-21 120.7 9.3 134 184-320 22-160 (168)
119 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5E-21 118.8 8.2 128 211-341 17-149 (149)
120 1xeu_A Internalin C; cellular 99.7 4.2E-16 1.4E-20 127.6 10.8 151 7-170 36-186 (263)
121 2ell_A Acidic leucine-rich nuc 99.7 4.1E-16 1.4E-20 118.9 9.9 131 36-169 24-160 (168)
122 4fdw_A Leucine rich hypothetic 99.6 3.2E-14 1.1E-18 123.1 22.0 264 36-320 113-383 (401)
123 4fs7_A Uncharacterized protein 99.6 1.4E-14 4.9E-19 125.8 19.7 310 7-336 66-392 (394)
124 1w8a_A SLIT protein; signaling 99.6 2.3E-15 7.8E-20 117.2 11.9 132 189-324 11-143 (192)
125 1w8a_A SLIT protein; signaling 99.6 5.5E-15 1.9E-19 115.0 13.4 130 159-298 11-141 (192)
126 2je0_A Acidic leucine-rich nuc 99.6 8.3E-16 2.8E-20 114.7 6.3 125 12-140 17-147 (149)
127 1dce_A Protein (RAB geranylger 99.6 2.2E-17 7.5E-22 149.3 -3.4 203 131-339 347-567 (567)
128 2wfh_A SLIT homolog 2 protein 99.6 1.3E-14 4.3E-19 112.9 12.3 129 189-322 13-141 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.6 4.5E-15 1.5E-19 113.9 9.3 133 182-320 15-153 (176)
130 4fdw_A Leucine rich hypothetic 99.6 1.8E-13 6.2E-18 118.5 20.4 261 59-340 112-378 (401)
131 1dce_A Protein (RAB geranylger 99.6 1.8E-16 6E-21 143.4 -0.0 196 9-241 346-566 (567)
132 2o6r_A Variable lymphocyte rec 99.6 4.4E-14 1.5E-18 108.5 13.0 132 189-324 10-141 (177)
133 2o6r_A Variable lymphocyte rec 99.6 6.8E-14 2.3E-18 107.4 13.6 129 14-146 9-137 (177)
134 2wfh_A SLIT homolog 2 protein 99.6 5.3E-14 1.8E-18 109.4 12.9 127 159-296 13-139 (193)
135 4b8c_D Glucose-repressible alc 99.5 5.2E-15 1.8E-19 137.9 7.5 154 11-170 172-330 (727)
136 4fs7_A Uncharacterized protein 99.5 4.8E-13 1.6E-17 116.2 19.2 284 6-312 88-393 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-14 1E-18 109.3 8.8 125 211-342 19-150 (176)
138 4b8c_D Glucose-repressible alc 99.5 3.8E-15 1.3E-19 138.7 3.4 179 36-226 173-356 (727)
139 4gt6_A Cell surface protein; l 99.5 9.5E-12 3.3E-16 108.0 23.9 122 211-340 265-386 (394)
140 4gt6_A Cell surface protein; l 99.5 2.5E-11 8.5E-16 105.3 22.9 154 6-165 57-214 (394)
141 1ds9_A Outer arm dynein; leuci 99.4 6.4E-16 2.2E-20 121.0 -7.3 131 11-147 17-154 (198)
142 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 99.1 11.0 107 213-322 11-117 (170)
143 1ds9_A Outer arm dynein; leuci 99.4 3.9E-15 1.3E-19 116.5 -3.9 110 181-296 43-153 (198)
144 3g39_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 98.5 10.1 103 236-342 10-112 (170)
145 2r9u_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 97.3 11.0 104 214-320 15-118 (174)
146 2r9u_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 97.2 10.1 103 236-342 13-115 (174)
147 3un9_A NLR family member X1; l 99.3 1.9E-13 6.6E-18 117.2 -1.8 162 132-298 71-254 (372)
148 4h09_A Hypothetical leucine ri 99.3 2.3E-09 7.8E-14 92.5 22.8 302 9-332 43-357 (379)
149 3un9_A NLR family member X1; l 99.2 7.8E-13 2.7E-17 113.4 -1.5 174 155-330 71-262 (372)
150 4h09_A Hypothetical leucine ri 99.2 3.7E-09 1.3E-13 91.2 21.4 296 31-341 41-342 (379)
151 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.4E-15 98.6 9.0 105 15-123 11-117 (347)
152 2ifg_A High affinity nerve gro 99.1 2.4E-10 8E-15 97.5 9.9 106 214-322 11-118 (347)
153 2ra8_A Uncharacterized protein 98.9 4.8E-10 1.6E-14 95.3 2.6 162 54-222 166-341 (362)
154 2ra8_A Uncharacterized protein 98.8 4.6E-09 1.6E-13 89.3 6.0 58 129-194 168-227 (362)
155 3e4g_A ATP synthase subunit S, 98.7 9.9E-09 3.4E-13 76.9 4.3 92 4-95 53-150 (176)
156 1io0_A Tropomodulin; LRR prote 98.5 1.5E-08 5.1E-13 77.8 1.4 110 211-320 36-164 (185)
157 3e4g_A ATP synthase subunit S, 98.5 1.3E-08 4.5E-13 76.2 0.5 85 235-319 61-151 (176)
158 1io0_A Tropomodulin; LRR prote 98.5 2.3E-08 8E-13 76.7 0.7 119 177-296 27-164 (185)
159 3rw6_A Nuclear RNA export fact 98.2 6E-07 2.1E-11 72.4 3.8 108 8-116 137-258 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.2E-06 4E-11 70.8 4.5 39 234-272 169-209 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 8.4E-05 2.9E-09 56.7 1.9 110 211-320 41-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 8.4E-05 2.9E-09 56.7 1.2 117 179-296 34-170 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.005 1.7E-07 43.7 5.1 57 238-296 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.1 0.017 5.7E-07 40.9 6.6 55 88-145 12-67 (130)
165 2lz0_A Uncharacterized protein 85.5 2.4 8.3E-05 28.0 5.8 47 23-70 7-53 (100)
166 2lz0_A Uncharacterized protein 76.0 3.7 0.00013 27.1 4.1 45 48-93 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-41 Score=318.44 Aligned_cols=332 Identities=33% Similarity=0.528 Sum_probs=232.2
Q ss_pred CCCCcccCCC-CcccEEEeeccccccCccccccCCCCCceeeccccccccCCch-hhcCccCccEEEecccccccccCcc
Q 043372 2 GKVPGKLGSI-PKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPE-TLRDIKRMRIIAFGINKLSGEIPFS 79 (342)
Q Consensus 2 ~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~~~ 79 (342)
|.+|..+.+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|. .+.++++|++|++++|.+.+..|..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 4566666553 7777777777777666666677777777777777776644443 3666777777777777666555555
Q ss_pred ccCCC-CCCEEeCcCC--------------------------CCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCC
Q 043372 80 IYNLS-SLSVFDFPVN--------------------------QLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNT 132 (342)
Q Consensus 80 ~~~l~-~L~~l~l~~~--------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 132 (342)
+..++ +|++|++++| .+++.+|..+. .+++|++|++++|.+.+..|..+..+
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l 441 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSL 441 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcC
Confidence 55444 4555555544 44434444433 45666666666666655556666666
Q ss_pred CCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCC
Q 043372 133 SNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLST 211 (342)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 211 (342)
++|++|++++|.+....+. +..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+...++..+..+ +
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~ 514 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-E 514 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-T
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcC-C
Confidence 6666666666666543333 6666666666666666654 234456677888888888887777777777766 6
Q ss_pred CccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcc-------------------------------------
Q 043372 212 RLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPES------------------------------------- 254 (342)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------------------------- 254 (342)
+|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 7888888888887777777888888888888888776544432
Q ss_pred ---------------------------------cccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCc
Q 043372 255 ---------------------------------IGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPS 301 (342)
Q Consensus 255 ---------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 301 (342)
+..+++|+.|++++|.+.+.+|..+++++.|+.|++++|.+++.+|.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 22346678888888888888888888888888888888888888888
Q ss_pred cccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 302 SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 302 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
.++++++|+.|++++|.+++.+|..+..++.| ++|++++|
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L-~~L~ls~N 714 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTML-TEIDLSNN 714 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCC-SEEECCSS
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCC-CEEECcCC
Confidence 88888888888888888888888888888888 88888887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.3e-41 Score=314.52 Aligned_cols=330 Identities=35% Similarity=0.562 Sum_probs=273.3
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccC-CCCCceeeccccccccCCchhhcCccCccEEEecccccccccCcc-c
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGN-LSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFS-I 80 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-~ 80 (342)
.+|.. ++++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..|.++++|++|++++|.+.+..|.. +
T Consensus 262 ~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l 339 (768)
T 3rgz_A 262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339 (768)
T ss_dssp SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH
T ss_pred ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH
Confidence 44544 7899999999999998777777766 499999999999999899999999999999999999998777765 8
Q ss_pred cCCCCCCEEeCcCCCCCCCCCccccCC--------------------------CCCCcEEEccCCccCCCCCccccCCCC
Q 043372 81 YNLSSLSVFDFPVNQLQGSFPSDLGFT--------------------------LPNLELLNVADNQFAGPIPASISNTSN 134 (342)
Q Consensus 81 ~~l~~L~~l~l~~~~~~~~~~~~~~~~--------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~ 134 (342)
..+++|++|++++|.+.+.+|..+..- +++|++|++++|.+.+..|..+..+++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC
Confidence 999999999999999876666655421 334555555555555556666777777
Q ss_pred ccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCc
Q 043372 135 LMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRL 213 (342)
Q Consensus 135 L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L 213 (342)
|++|++++|.+.+..+. +..+++|+.|++++|.+.. ..+..+..+++|+.+++++|.+....+..+..+ ++|
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L 492 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNL 492 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTC
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC------cCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCC
Confidence 77777777777654443 7777788888888777665 344567788899999999998887778777776 789
Q ss_pred cEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeecccc---------------
Q 043372 214 RKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSS--------------- 278 (342)
Q Consensus 214 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------- 278 (342)
++|++++|.+.+..+.++..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 99999999998888888889999999999999998888888999999999999999887655543
Q ss_pred -------------------------------------------------------ccCCCCccEEecCCcccccccCccc
Q 043372 279 -------------------------------------------------------IGNLASLTILDFSANLLEGSIPSSL 303 (342)
Q Consensus 279 -------------------------------------------------------~~~~~~L~~L~l~~n~~~~~~~~~~ 303 (342)
+..+++|+.|++++|++++.+|..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 2335678999999999999999999
Q ss_pred cCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 304 GKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 304 ~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+++++|+.|++++|.+++.+|..+..++.| ++|||++|
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L-~~LdLs~N 690 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGL-NILDLSSN 690 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSS
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCC-CEEECCCC
Confidence 999999999999999999999999999999 99999987
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-38 Score=282.67 Aligned_cols=336 Identities=21% Similarity=0.207 Sum_probs=261.5
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccc-cCCchhhcCccCccEEEecccccccccCcccc
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFV-GRIPETLRDIKRMRIIAFGINKLSGEIPFSIY 81 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 81 (342)
++|. +. ++|++|++++|.+++..+..+.++++|++|++++|.+. ...+..|.++++|++|++++|.+.+..+..+.
T Consensus 24 ~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 24 QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 4565 22 68999999999988777888999999999999999876 34466788899999999999999877788899
Q ss_pred CCCCCCEEeCcCCCCCCCCCc-cccCCCCCCcEEEccCCccCCCCCcc-ccCCCCccEEEccCCcCcCCCCC-cccc--C
Q 043372 82 NLSSLSVFDFPVNQLQGSFPS-DLGFTLPNLELLNVADNQFAGPIPAS-ISNTSNLMTLAIGGNGFSGKVPS-FENL--H 156 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~--~ 156 (342)
.+++|++|++++|.+++..+. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+....+. +..+ .
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 999999999999988753333 23446889999999999888766665 77889999999999988765544 4443 4
Q ss_pred cccEEEcccCCCCCCCCCch--hhhhhhccCCcccEEEeccCCCCCCCccch----------------------------
Q 043372 157 KLREVSISQNPLGNGEKDDL--EFVNSLVNTSRLELLEISDTNCGGMLPEAV---------------------------- 206 (342)
Q Consensus 157 ~L~~l~l~~~~~~~~~~~~~--~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~---------------------------- 206 (342)
+++.++++++.+........ .....+..+++|+++++++|.+....+..+
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 66666766666554332211 111223344556666666654432211111
Q ss_pred ---------hc-cCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeecc
Q 043372 207 ---------GN-LSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIP 276 (342)
Q Consensus 207 ---------~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (342)
.. ..+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 10 12579999999999987788888999999999999999998888889999999999999999987778
Q ss_pred ccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 277 SSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++| ++|++++|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N 405 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTN 405 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSS
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc-cEEEccCC
Confidence 889999999999999999998778999999999999999999996555677889999 99999987
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8e-39 Score=294.72 Aligned_cols=323 Identities=20% Similarity=0.301 Sum_probs=199.6
Q ss_pred CCcccCCCCcccEEEeeccccccC-----------------cccccc--CCCCCceeeccccccccCCchhhcCccCccE
Q 043372 4 VPGKLGSIPKLRILTVHANYLSGE-----------------IPSSFG--NLSSLEVLSATANQFVGRIPETLRDIKRMRI 64 (342)
Q Consensus 4 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 64 (342)
+|..++++++|++|++++|.+++. .+..+. ++++|++|++++|.+.+..|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 788888888888888888888764 677777 8888888888888888788888888888888
Q ss_pred EEecccc-ccc-ccCccccCC------CCCCEEeCcCCCCCCCCCc--cccCCCCCCcEEEccCCccCCCCCccccCCCC
Q 043372 65 IAFGINK-LSG-EIPFSIYNL------SSLSVFDFPVNQLQGSFPS--DLGFTLPNLELLNVADNQFAGPIPASISNTSN 134 (342)
Q Consensus 65 L~l~~~~-i~~-~~~~~~~~l------~~L~~l~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 134 (342)
|++++|. +++ ..|..+..+ ++|++|++++|.++ .+|. .+. .+++|++|++++|.+.+.+| .+..+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 8888887 776 667666655 78888888888887 7776 554 57888888888887775666 6667777
Q ss_pred ccEEEccCCcCcCCCCCccccCc-ccEEEcccCCCCCCCCCchhhhhhhcc--CCcccEEEeccCCCCCCCccchh----
Q 043372 135 LMTLAIGGNGFSGKVPSFENLHK-LREVSISQNPLGNGEKDDLEFVNSLVN--TSRLELLEISDTNCGGMLPEAVG---- 207 (342)
Q Consensus 135 L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~l~l~~~~~~~~~~~~~~---- 207 (342)
|++|++++|.+...+..+..+++ |+.|++++|.+..... .+.. +++|+.+++++|.+....+..+.
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN-------IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS-------CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch-------hhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 77777777777755555777777 7777777776653321 1111 22445555554444433333322
Q ss_pred ---cc-----------------------CCCccEEEecCcccccccCccccCc-------CCCCEEEcCCCcccccCCcc
Q 043372 208 ---NL-----------------------STRLRKLSVGNNQLFGNIPSGLRNL-------VNLELLDLGDNQFIGRIPES 254 (342)
Q Consensus 208 ---~~-----------------------~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~ 254 (342)
.. .++|++|++++|.+.......+... ++|++|++++|.+. .+|..
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 22 2445555555555442111111111 15555555555555 33443
Q ss_pred cc--cccCcceEEccCCeeeeeccccccCCCCccEEec------CCcccccccCccccCCCCCcEEEcCCCcCccccchh
Q 043372 255 IG--YLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDF------SANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE 326 (342)
Q Consensus 255 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 326 (342)
+. .+++|+.|++++|.+.+ +|..+..+++|++|++ ++|.+.+.+|..+..+++|+.|++++|.+. .+|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~ 584 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK 584 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHh
Confidence 33 45555555555555553 4555555555555555 234444455555555555555555555553 44544
Q ss_pred hcCccccceeeccCCC
Q 043372 327 VIGLSSLSIYLDLSQN 342 (342)
Q Consensus 327 ~~~l~~l~~~l~l~~n 342 (342)
+. ++| ++|+|++|
T Consensus 585 ~~--~~L-~~L~Ls~N 597 (636)
T 4eco_A 585 IT--PNI-SVLDIKDN 597 (636)
T ss_dssp CC--TTC-CEEECCSC
T ss_pred Hh--CcC-CEEECcCC
Confidence 33 444 55555554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-37 Score=284.07 Aligned_cols=138 Identities=16% Similarity=0.135 Sum_probs=84.9
Q ss_pred CcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCC
Q 043372 5 PGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLS 84 (342)
Q Consensus 5 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 84 (342)
|+.|+++++||+|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|.+....+..+..++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 45666777777777777776666666677777777777777777666666677777777777777776655456666777
Q ss_pred CCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCcc--EEEccCC
Q 043372 85 SLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLM--TLAIGGN 143 (342)
Q Consensus 85 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~ 143 (342)
+|++|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|+ .+++++|
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred cccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 777777777766631212222 366666666666655533333344444444 3444433
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-37 Score=287.24 Aligned_cols=302 Identities=22% Similarity=0.325 Sum_probs=229.2
Q ss_pred CCcccC--CCCcccEEEeeccccccCccccccCCCCCceeeccccc-ccc-CCchhhcCc------cCccEEEecccccc
Q 043372 4 VPGKLG--SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQ-FVG-RIPETLRDI------KRMRIIAFGINKLS 73 (342)
Q Consensus 4 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~i~ 73 (342)
+|..++ ++++|++|++++|.+.+..+..+.++++|++|++++|. +++ ..|..+.++ ++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 888988 99999999999998888888889999999999999998 776 667767665 88888888888888
Q ss_pred cccCc--cccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCC-ccEEEccCCcCcCCCC
Q 043372 74 GEIPF--SIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSN-LMTLAIGGNGFSGKVP 150 (342)
Q Consensus 74 ~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 150 (342)
.+|. .+..+++|++|++++|.+.+.+| .+. .+++|++|++++|.+. .+|..+..+++ |++|++++|.+...+.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccch
Confidence 6777 78888888888888888776666 333 4566666666666655 44555555555 6666666665554333
Q ss_pred Ccc---------------------------------ccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCC
Q 043372 151 SFE---------------------------------NLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTN 197 (342)
Q Consensus 151 ~~~---------------------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 197 (342)
.+. .+++|+.|++++|.+.... ...+..+++|+.|++++|.
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp------~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP------KELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC------THHHHTTCCCSEEECCSSC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC------HHHHccCCCCCEEECCCCC
Confidence 332 3334445555544444211 1123457889999999888
Q ss_pred CCCCCccchhccCC-------CccEEEecCcccccccCcccc--CcCCCCEEEcCCCcccccCCcccccccCcceEEc--
Q 043372 198 CGGMLPEAVGNLST-------RLRKLSVGNNQLFGNIPSGLR--NLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWL-- 266 (342)
Q Consensus 198 ~~~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-- 266 (342)
+. .++........ +|++|++++|.+. .++..+. .+++|++|++++|.+.+ .|..+..+++|+.|++
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 77 44444333212 8999999999998 6777776 89999999999999996 7888899999999999
Q ss_pred ----cCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCcc
Q 043372 267 ----NGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 267 ----~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
++|.+.+.+|..+..+++|++|++++|.+. .+|..+. ++|+.|++++|++..
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 457777789999999999999999999995 7887765 899999999998874
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.2e-37 Score=282.49 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=72.1
Q ss_pred cccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCC
Q 043372 6 GKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSS 85 (342)
Q Consensus 6 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~ 85 (342)
..|+++++||+|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|++++|.+....+..++.+++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 35666666777777666666555666666666677777666666665666666666666666666666444455666666
Q ss_pred CCEEeCcCCCCCC-CCCccccCCCCCCcEEEccCCccC
Q 043372 86 LSVFDFPVNQLQG-SFPSDLGFTLPNLELLNVADNQFA 122 (342)
Q Consensus 86 L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 122 (342)
|++|++++|.+.+ .+|..+. .+++|++|++++|.+.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCC
T ss_pred CCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcce
Confidence 6666666666653 2444444 4666666666655443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-36 Score=277.71 Aligned_cols=330 Identities=21% Similarity=0.173 Sum_probs=194.7
Q ss_pred CCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCC
Q 043372 4 VPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNL 83 (342)
Q Consensus 4 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l 83 (342)
.|+.|+++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+
T Consensus 73 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 152 (606)
T 3t6q_A 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC
T ss_pred ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCC
Confidence 36667777777777777777776666677777777777777777766555566677777777777776664332333346
Q ss_pred CCCCEEeCcCCCCCCCCCccccCCCCC-----------------------------------------------------
Q 043372 84 SSLSVFDFPVNQLQGSFPSDLGFTLPN----------------------------------------------------- 110 (342)
Q Consensus 84 ~~L~~l~l~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 110 (342)
++|++|++++|.++ .++...+..+++
T Consensus 153 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 153 EKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231 (606)
T ss_dssp TTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEE
T ss_pred cccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhhee
Confidence 66666666666554 221111112333
Q ss_pred ------------------------CcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccC
Q 043372 111 ------------------------LELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQN 166 (342)
Q Consensus 111 ------------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 166 (342)
|++|+++++.+.+..+..+..+++|++|++++|.+...+..+..+++|+.|++++|
T Consensus 232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC
T ss_pred chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccC
Confidence 33344444444433344456667777777777776665555667777777777777
Q ss_pred CCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCC---------------------------ccchhccCCCccEEEec
Q 043372 167 PLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGML---------------------------PEAVGNLSTRLRKLSVG 219 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~---------------------------~~~~~~~~~~L~~L~l~ 219 (342)
.+... ....+..+++|++++++++.+.... +..+..+ ++|++|+++
T Consensus 312 ~l~~~------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~ 384 (606)
T 3t6q_A 312 KFENL------CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLS 384 (606)
T ss_dssp CCSBG------GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC-TTCCEEECC
T ss_pred CcCcC------chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC-CCCCEEECC
Confidence 65541 1223344444555555444333222 2223333 455555555
Q ss_pred CcccccccCccccCcCCCCEEEcCCCcccccCCc-ccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccc
Q 043372 220 NNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPE-SIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGS 298 (342)
Q Consensus 220 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 298 (342)
+|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence 5555444445555556666666666655543332 255566666666666666555555666667777777777766542
Q ss_pred ---cCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 299 ---IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 299 ---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
.+..+..+++|+.|++++|.+.+..|..+..+++| ++|+|++|
T Consensus 465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N 510 (606)
T 3t6q_A 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-NHVDLSHN 510 (606)
T ss_dssp EECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSS
T ss_pred ccccchhhccCCCccEEECCCCccCccChhhhccccCC-CEEECCCC
Confidence 22456667777777777777776666777777777 77777776
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-36 Score=279.18 Aligned_cols=143 Identities=24% Similarity=0.191 Sum_probs=126.8
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....|..++.
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 5676655 78999999999999888889999999999999999999888889999999999999999999777999999
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCC-CCCccccCCCCccEEEccCCcCcCC
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAG-PIPASISNTSNLMTLAIGGNGFSGK 148 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~ 148 (342)
+++|++|++++|.+. .++...+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.+...
T Consensus 103 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 103 LTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999999999999998 5553334479999999999999875 4688899999999999999887654
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-36 Score=270.25 Aligned_cols=320 Identities=17% Similarity=0.172 Sum_probs=262.1
Q ss_pred CCcccCCCCcccEEEeecccccc-CccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCc--cc
Q 043372 4 VPGKLGSIPKLRILTVHANYLSG-EIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPF--SI 80 (342)
Q Consensus 4 ~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~--~~ 80 (342)
.|..++++++|++|++++|.+.+ ..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+. .+
T Consensus 46 ~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 46 NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 47789999999999999998864 4467899999999999999999988888999999999999999999864443 48
Q ss_pred cCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCC--CCccEEEccCCcCcCCCCC-------
Q 043372 81 YNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNT--SNLMTLAIGGNGFSGKVPS------- 151 (342)
Q Consensus 81 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~------- 151 (342)
..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+..+..+ ++++.+++++|.+....+.
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 8999999999999999866676655579999999999999987777666554 6778888887777654432
Q ss_pred --ccccCcccEEEcccCCCCCCCCCchh-------------------------------hhhhh--ccCCcccEEEeccC
Q 043372 152 --FENLHKLREVSISQNPLGNGEKDDLE-------------------------------FVNSL--VNTSRLELLEISDT 196 (342)
Q Consensus 152 --~~~~~~L~~l~l~~~~~~~~~~~~~~-------------------------------~~~~l--~~~~~L~~l~l~~~ 196 (342)
+..+++|+.|++++|.+.......+. ....+ ...++|+.++++++
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 23456777777777765431000000 00001 12368999999999
Q ss_pred CCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeecc
Q 043372 197 NCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIP 276 (342)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (342)
.+....+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 286 ~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 286 KIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp CCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 8887777777766 799999999999987778889999999999999999988778889999999999999999997878
Q ss_pred ccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccc
Q 043372 277 SSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIP 324 (342)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 324 (342)
..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 899999999999999999997666778899999999999999998877
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=270.88 Aligned_cols=310 Identities=22% Similarity=0.200 Sum_probs=259.1
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..+..
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 4666554 68999999999998777888999999999999999998888888999999999999999998666667889
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREV 161 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l 161 (342)
+++|++|++++|.+.+..+.. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 999999999999988444444 44789999999999988877777888999999999999988876654 8889999999
Q ss_pred EcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEE
Q 043372 162 SISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLD 241 (342)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 241 (342)
+++++.+.... ...+..+++|+.++++++.....++...... .+|++|++++|.+.......+..+++|+.|+
T Consensus 182 ~l~~n~i~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 182 RLRHLNINAIR------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp EEESCCCCEEC------TTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred eCCCCcCcEeC------hhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeE
Confidence 99998876532 2356788999999999887666555555444 4899999999988754445778889999999
Q ss_pred cCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCcc
Q 043372 242 LGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
+++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 99999987777788889999999999999988778889999999999999999986666778889999999999999875
Q ss_pred c
Q 043372 322 T 322 (342)
Q Consensus 322 ~ 322 (342)
.
T Consensus 335 ~ 335 (477)
T 2id5_A 335 D 335 (477)
T ss_dssp S
T ss_pred c
Confidence 4
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-36 Score=285.46 Aligned_cols=327 Identities=17% Similarity=0.262 Sum_probs=222.4
Q ss_pred CCcccCCCCcccEEEeecccccc-----------------Ccccccc--CCCCCceeeccccccccCCchhhcCccCccE
Q 043372 4 VPGKLGSIPKLRILTVHANYLSG-----------------EIPSSFG--NLSSLEVLSATANQFVGRIPETLRDIKRMRI 64 (342)
Q Consensus 4 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 64 (342)
+|..++++++|++|++++|.+++ ..|..+. ++++|++|++++|.+.+..|..|.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78888899999999999988886 2666666 8889999999998888888888888899999
Q ss_pred EEecccc-ccc-ccCcccc-------CCCCCCEEeCcCCCCCCCCCc--cccCCCCCCcEEEccCCccCCCCCccccCCC
Q 043372 65 IAFGINK-LSG-EIPFSIY-------NLSSLSVFDFPVNQLQGSFPS--DLGFTLPNLELLNVADNQFAGPIPASISNTS 133 (342)
Q Consensus 65 L~l~~~~-i~~-~~~~~~~-------~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 133 (342)
|++++|. +.+ ..|..+. .+++|+.|++++|.+. .+|. .+. .+++|++|++++|.+. .+| .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 9998887 775 5665444 3458888888888887 7777 555 6888888888888877 666 777888
Q ss_pred CccEEEccCCcCcCCCCCccccCc-ccEEEcccCCCCCCCCCchh----------------------hhhhhc--cCCcc
Q 043372 134 NLMTLAIGGNGFSGKVPSFENLHK-LREVSISQNPLGNGEKDDLE----------------------FVNSLV--NTSRL 188 (342)
Q Consensus 134 ~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~----------------------~~~~l~--~~~~L 188 (342)
+|+.|++++|.+...+..+..+++ |+.|++++|.+...+..... +...+. .+++|
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 888888888888765556777887 88888888876643211000 000000 22355
Q ss_pred cEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccC--------cCCCCEEEcCCCcccccCCcccc--cc
Q 043372 189 ELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRN--------LVNLELLDLGDNQFIGRIPESIG--YL 258 (342)
Q Consensus 189 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~ 258 (342)
+.|++++|.+. .++..+....++|+.|++++|.+. .++..... +++|+.|++++|.+. .+|..+. .+
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l 752 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence 55555555554 233333322256677777776665 33332221 226777777777666 4555554 66
Q ss_pred cCcceEEccCCeeeeeccccccCCCCccEEecCC------cccccccCccccCCCCCcEEEcCCCcCccccchhhcCccc
Q 043372 259 QKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSA------NLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSS 332 (342)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 332 (342)
++|+.|++++|.+.+ +|..+.++++|+.|++++ |.+.+.+|..+.++++|+.|++++|.+ +.+|..+. ++
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~ 828 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQ 828 (876)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SS
T ss_pred CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CC
Confidence 777777777777664 566666777777777755 555566677777777777777777777 36666544 45
Q ss_pred cceeeccCCC
Q 043372 333 LSIYLDLSQN 342 (342)
Q Consensus 333 l~~~l~l~~n 342 (342)
| ++|+|++|
T Consensus 829 L-~~LdLs~N 837 (876)
T 4ecn_A 829 L-YILDIADN 837 (876)
T ss_dssp S-CEEECCSC
T ss_pred C-CEEECCCC
Confidence 6 77777766
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=273.76 Aligned_cols=336 Identities=23% Similarity=0.195 Sum_probs=214.7
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..+..
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 4565443 56888888888887666677888888888888888877777777888888888888888887666677888
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCC-CCCccccCCCCccEEEccCCcCcCCCCC-cccc-----
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAG-PIPASISNTSNLMTLAIGGNGFSGKVPS-FENL----- 155 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~----- 155 (342)
+++|++|++++|.++ .++...+..+++|++|++++|.+.. ..|..+.++++|++|++++|.+....+. +..+
T Consensus 99 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 99 LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp CTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 888888888888777 4544334467888888888887764 3567777788888888877765443221 2222
Q ss_pred --------------------------------------------------------------------------------
Q 043372 156 -------------------------------------------------------------------------------- 155 (342)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (342)
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence
Q ss_pred ------------------------CcccEEEcccCCCCCCCCCch---------------hhh-----------------
Q 043372 156 ------------------------HKLREVSISQNPLGNGEKDDL---------------EFV----------------- 179 (342)
Q Consensus 156 ------------------------~~L~~l~l~~~~~~~~~~~~~---------------~~~----------------- 179 (342)
++|+.++++++.+........ .+.
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence 223333333222211100000 000
Q ss_pred ---hhhccCCcccEEEeccCCCCCCC--ccchhcc----------------------CCCccEEEecCcccccccC-ccc
Q 043372 180 ---NSLVNTSRLELLEISDTNCGGML--PEAVGNL----------------------STRLRKLSVGNNQLFGNIP-SGL 231 (342)
Q Consensus 180 ---~~l~~~~~L~~l~l~~~~~~~~~--~~~~~~~----------------------~~~L~~L~l~~~~~~~~~~-~~~ 231 (342)
.....+++|+.++++++.+.... +..+... .++|++|++++|.+.+..+ ..+
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhh
Confidence 00022334444444444332111 1112222 1345555555555443322 345
Q ss_pred cCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeee-eeccccccCCCCccEEecCCcccccccCccccCCCCCc
Q 043372 232 RNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFL-GEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLI 310 (342)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 310 (342)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++.+..+..+.++++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 56677777777777776666667777778888888888776 35677777788888888888888766677788888888
Q ss_pred EEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 311 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 311 ~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
.|++++|.+++..|..+..++++ ++|++++|
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N 528 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSL-QKIWLHTN 528 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTC-CEEECCSS
T ss_pred EEeCCCCcCCCCCHHHhhcccCC-cEEEecCC
Confidence 88888888887666677778888 88888876
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.1e-36 Score=260.63 Aligned_cols=307 Identities=20% Similarity=0.250 Sum_probs=262.2
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
.++++|+++++++.++......+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999987777778899999999999999998888889999999999999999997778889999999999
Q ss_pred eCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCC
Q 043372 90 DFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLG 169 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 169 (342)
++++|.++ .+|...+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.++++++.+.
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccccc
Confidence 99999998 78877766799999999999999877777889999999999999988765 3677899999999988765
Q ss_pred CCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccc
Q 043372 170 NGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIG 249 (342)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (342)
. +...+.++.++++++.+... +. ..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 200 ~-----------~~~~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 200 T-----------LAIPIAVEELDASHNSINVV-RG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp E-----------EECCSSCSEEECCSSCCCEE-EC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred c-----------cCCCCcceEEECCCCeeeec-cc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 3 33457899999999877543 22 2236899999999988743 567888999999999999988
Q ss_pred cCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcC
Q 043372 250 RIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIG 329 (342)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 329 (342)
..+..+..+++|+.|++++|++. .++..+..+++|++|++++|++. .++..+..+++|+.|++++|+++. ++ +..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~ 337 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LST 337 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCT
T ss_pred cChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chh
Confidence 77888889999999999999987 45666678899999999999988 577778888999999999999984 44 667
Q ss_pred ccccceeeccCCC
Q 043372 330 LSSLSIYLDLSQN 342 (342)
Q Consensus 330 l~~l~~~l~l~~n 342 (342)
++++ ++|++++|
T Consensus 338 ~~~L-~~L~l~~N 349 (390)
T 3o6n_A 338 HHTL-KNLTLSHN 349 (390)
T ss_dssp TCCC-SEEECCSS
T ss_pred hccC-CEEEcCCC
Confidence 8888 99999987
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=265.47 Aligned_cols=316 Identities=19% Similarity=0.199 Sum_probs=274.2
Q ss_pred cEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCC
Q 043372 15 RILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVN 94 (342)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~ 94 (342)
+.++.+++.++. .+..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 567777777763 44433 368999999999999888889999999999999999999888999999999999999999
Q ss_pred CCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCC
Q 043372 95 QLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEK 173 (342)
Q Consensus 95 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~ 173 (342)
.++ .+|...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. +.++++|+.|++++|.+....
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 168 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP- 168 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-
Confidence 998 77776666899999999999999877788899999999999999998876554 899999999999999887632
Q ss_pred CchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCc
Q 043372 174 DDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPE 253 (342)
Q Consensus 174 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (342)
...+..+++|+.|+++++.+.......+..+ ++|++|++++|...+..+.......+|++|++++|.+.+..+.
T Consensus 169 -----~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 169 -----TEALSHLHGLIVLRLRHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp -----HHHHTTCTTCCEEEEESCCCCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred -----hhHhcccCCCcEEeCCCCcCcEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 3457789999999999998876555566665 7899999999887666666555667999999999999855546
Q ss_pred ccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCcccc
Q 043372 254 SIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSL 333 (342)
Q Consensus 254 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l 333 (342)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 78889999999999999987777889999999999999999998889999999999999999999997666678889999
Q ss_pred ceeeccCCC
Q 043372 334 SIYLDLSQN 342 (342)
Q Consensus 334 ~~~l~l~~n 342 (342)
++|++++|
T Consensus 323 -~~L~l~~N 330 (477)
T 2id5_A 323 -ETLILDSN 330 (477)
T ss_dssp -CEEECCSS
T ss_pred -CEEEccCC
Confidence 99999987
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4e-36 Score=281.72 Aligned_cols=317 Identities=20% Similarity=0.265 Sum_probs=244.8
Q ss_pred CCCcccC--CCCcccEEEeeccccccCccccccCCCCCceeeccccc-ccc-CCchhhcCcc-------CccEEEecccc
Q 043372 3 KVPGKLG--SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQ-FVG-RIPETLRDIK-------RMRIIAFGINK 71 (342)
Q Consensus 3 ~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~ 71 (342)
.+|..++ ++++|++|++++|.+.+..+..+.++++|++|++++|. +++ ..|..+.+++ +|++|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 4888887 99999999999998888888889999999999999997 776 5666666555 89999999988
Q ss_pred cccccCc--cccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCC-ccEEEccCCcCcCC
Q 043372 72 LSGEIPF--SIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSN-LMTLAIGGNGFSGK 148 (342)
Q Consensus 72 i~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~ 148 (342)
+. .+|. .+..+++|+.|++++|.+. .+| .+. .+++|++|++++|.+. .+|..+..+++ |+.|++++|.+...
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC
Confidence 88 7777 7888888888888888887 777 443 6788888888888877 66666777777 88888888777654
Q ss_pred CCCccccC--cccEEEcccCCCCCCCCC----------------------chhhhh-hhccCCcccEEEeccCCCCCCCc
Q 043372 149 VPSFENLH--KLREVSISQNPLGNGEKD----------------------DLEFVN-SLVNTSRLELLEISDTNCGGMLP 203 (342)
Q Consensus 149 ~~~~~~~~--~L~~l~l~~~~~~~~~~~----------------------~~~~~~-~l~~~~~L~~l~l~~~~~~~~~~ 203 (342)
+..+...+ +|+.|++++|.+...... ...++. .+..+++|+.|++++|.+. .++
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 43343332 255555555544321100 001222 2347899999999999887 445
Q ss_pred cchhccC-------CCccEEEecCcccccccCcccc--CcCCCCEEEcCCCcccccCCcccccccCcceEEccC------
Q 043372 204 EAVGNLS-------TRLRKLSVGNNQLFGNIPSGLR--NLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNG------ 268 (342)
Q Consensus 204 ~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------ 268 (342)
..+.... ++|++|++++|++. .++..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 4443321 28999999999998 6777776 89999999999999996 688888999999999976
Q ss_pred CeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCc
Q 043372 269 NKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL 330 (342)
Q Consensus 269 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l 330 (342)
|.+.+.+|..+.++++|+.|++++|.+ +.+|..+. ++|+.|++++|++....+..+...
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc
Confidence 777778899999999999999999999 47888765 699999999999986555555443
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-34 Score=269.50 Aligned_cols=336 Identities=19% Similarity=0.212 Sum_probs=223.8
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..++.
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 5676665 78999999999998877788999999999999999999888888999999999999999998555567899
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC---ccccCccc
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS---FENLHKLR 159 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~ 159 (342)
+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. ...+++|+
T Consensus 96 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp CTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 999999999999987 55544444789999999999988877777888899999999999988766544 23557899
Q ss_pred EEEcccCCCCCCCCCchhhhhhh---------------------ccCCcccEEEeccCCCCCCCccchhccC-CCccEEE
Q 043372 160 EVSISQNPLGNGEKDDLEFVNSL---------------------VNTSRLELLEISDTNCGGMLPEAVGNLS-TRLRKLS 217 (342)
Q Consensus 160 ~l~l~~~~~~~~~~~~~~~~~~l---------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~ 217 (342)
.|++++|.+.......+.....+ ...++|+.++++++.+....+..+.... ++|++|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 99998887765433211111000 0124556666665555444444443331 2366666
Q ss_pred ecCcccccccCccccCcCCCCEEEcCCCcccccCCcc---------------------------------cccccCcceE
Q 043372 218 VGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPES---------------------------------IGYLQKLQGL 264 (342)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------------------~~~~~~L~~L 264 (342)
+++|.+.+..+..+..+++|++|++++|.+.+..+.. +..+++|++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 6666655444555555666666666666555444333 3445566666
Q ss_pred EccCCeeeeeccccccCCCCccEEecCCcc----------------------------cccccCccccCCCCCcEEEcCC
Q 043372 265 WLNGNKFLGEIPSSIGNLASLTILDFSANL----------------------------LEGSIPSSLGKCQNLISLNLSN 316 (342)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~----------------------------~~~~~~~~~~~~~~L~~l~l~~ 316 (342)
++++|.+.+..+..+..+++|++|++++|. +.+..+..+..+++|+.|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 666666655445555555555555554442 2223344455555566666666
Q ss_pred CcCccccc-hhhcCccccceeeccCCC
Q 043372 317 NNLSGTIP-TEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 317 ~~~~~~~~-~~~~~l~~l~~~l~l~~n 342 (342)
|.+.+.+| ..+..++++ ++|++++|
T Consensus 415 N~l~~~~~~~~~~~l~~L-~~L~Ls~n 440 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENI-FEIYLSYN 440 (680)
T ss_dssp SCCEEECCSGGGTTCTTC-CEEECCSC
T ss_pred CcCccccCcccccCcccc-cEEecCCC
Confidence 65554443 345555555 56666554
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-34 Score=269.22 Aligned_cols=114 Identities=19% Similarity=0.164 Sum_probs=60.6
Q ss_pred ccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCC
Q 043372 7 KLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSL 86 (342)
Q Consensus 7 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 86 (342)
.|+++++|++|++++|.+++..+..+.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..++.+++|
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 45556666666666665555555555555666666666555554444455555555555555555554444455555555
Q ss_pred CEEeCcCCCCCCCCCccccCCCCCCcEEEccCCcc
Q 043372 87 SVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQF 121 (342)
Q Consensus 87 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 121 (342)
++|++++|.+.+..+..+. .+++|++|++++|.+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKI 157 (680)
T ss_dssp CEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCC
T ss_pred CEEECCCCcccccCchhhc-ccccCCEEEccCCcc
Confidence 5555555555432222222 344444444444433
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.7e-35 Score=262.54 Aligned_cols=321 Identities=21% Similarity=0.274 Sum_probs=212.7
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence 4666665 78888888888888777778888888888888888888777778888888888888888887 44444 7
Q ss_pred CCCCCEEeCcCCCCCC-CCCccccCCCCCCcEEEccCCccCCCCCccccCCCCc--cEEEccCCcC--------------
Q 043372 83 LSSLSVFDFPVNQLQG-SFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNL--MTLAIGGNGF-------------- 145 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~-------------- 145 (342)
+++|++|++++|.+++ .+|..+. .+++|++|++++|.+.+ ..+..+++| +++++++|.+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred cCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccc
Confidence 8888888888888874 2455555 57888888887776643 223334444 5555555444
Q ss_pred --------------------------------------------------------------------------------
Q 043372 146 -------------------------------------------------------------------------------- 145 (342)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (342)
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence
Q ss_pred ---------------cC-CCCCc-----cccCcccEEEcccCCCCCCCCCchhhhhh----------------------h
Q 043372 146 ---------------SG-KVPSF-----ENLHKLREVSISQNPLGNGEKDDLEFVNS----------------------L 182 (342)
Q Consensus 146 ---------------~~-~~~~~-----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~----------------------l 182 (342)
.+ .+..+ ..+++|+.++++.+.+ .... ..... .
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 320 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ---SYIYEIFSNMNIKNFTVSGTRMVHMLCP 320 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT---HHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch---hhhhcccccCceeEEEcCCCccccccch
Confidence 11 11111 2222222222222222 1000 00000 1
Q ss_pred ccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCccccc--ccCccccCcCCCCEEEcCCCcccccCCc-cccccc
Q 043372 183 VNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFG--NIPSGLRNLVNLELLDLGDNQFIGRIPE-SIGYLQ 259 (342)
Q Consensus 183 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 259 (342)
..+++|+++++++|.+.+..+..+..+ ++|++|++++|++.+ ..+..+..+++|++|++++|.+.+..|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 456677777777776665555555555 567777777777654 2334566677777777777777653333 356667
Q ss_pred CcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchh-hcCccccceeec
Q 043372 260 KLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE-VIGLSSLSIYLD 338 (342)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~l~~l~~~l~ 338 (342)
+|++|++++|++.+..+..+. ++|++|++++|++. .+|..+..+++|+.|++++|+++ .+|.. +..++++ ++|+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L-~~L~ 474 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL-QKIW 474 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC-CEEE
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc-cEEE
Confidence 777777777777655555443 67888888888887 67777778888999999999888 46654 7778888 8888
Q ss_pred cCCC
Q 043372 339 LSQN 342 (342)
Q Consensus 339 l~~n 342 (342)
+++|
T Consensus 475 l~~N 478 (520)
T 2z7x_B 475 LHTN 478 (520)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 8887
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-34 Score=245.78 Aligned_cols=304 Identities=25% Similarity=0.358 Sum_probs=256.9
Q ss_pred cCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCC
Q 043372 8 LGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLS 87 (342)
Q Consensus 8 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 87 (342)
+..+++|++|+++++.+... ..+..+++|++|++++|.+++..+ +.++++|++|++++|.+.. . ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 34788999999999988743 348889999999999999986544 8999999999999999874 3 4689999999
Q ss_pred EEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCC
Q 043372 88 VFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNP 167 (342)
Q Consensus 88 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~ 167 (342)
+|++++|.+. .++. ...+++|++|++++|...... ..+..+++|+++++++|.+....+ +..+++|+.+++++|.
T Consensus 114 ~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC
T ss_pred EEECcCCccc-Cchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc
Confidence 9999999998 5554 336999999999999665333 448899999999999998876654 8899999999999998
Q ss_pred CCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcc
Q 043372 168 LGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQF 247 (342)
Q Consensus 168 ~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 247 (342)
+.... .+..+++|+.++++++.+....+ +... ++|++|++++|.+....+ +..+++|++|++++|.+
T Consensus 189 l~~~~--------~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 189 IEDIS--------PLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp CCCCG--------GGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ccccc--------cccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 86532 27788999999999998765433 4444 789999999999874433 78899999999999998
Q ss_pred cccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhh
Q 043372 248 IGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV 327 (342)
Q Consensus 248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 327 (342)
.+. ..+..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..| +
T Consensus 256 ~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~ 329 (347)
T 4fmz_A 256 SDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred CCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence 753 467889999999999999874 3 457889999999999999998888889999999999999999996555 8
Q ss_pred cCccccceeeccCCC
Q 043372 328 IGLSSLSIYLDLSQN 342 (342)
Q Consensus 328 ~~l~~l~~~l~l~~n 342 (342)
..++++ ++|++++|
T Consensus 330 ~~l~~L-~~L~l~~N 343 (347)
T 4fmz_A 330 ASLSKM-DSADFANQ 343 (347)
T ss_dssp GGCTTC-SEESSSCC
T ss_pred hhhhcc-ceeehhhh
Confidence 889999 99999998
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.6e-35 Score=266.11 Aligned_cols=307 Identities=20% Similarity=0.243 Sum_probs=261.6
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
.+++++.++++++.+....+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45789999999999987777778899999999999999998888889999999999999999998778888999999999
Q ss_pred eCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCC
Q 043372 90 DFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLG 169 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 169 (342)
++++|.++ .+|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.... +..+++|+.+++++|.+.
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc
Confidence 99999998 777776667999999999999998878888999999999999999887653 567889999999988765
Q ss_pred CCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccc
Q 043372 170 NGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIG 249 (342)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (342)
. +...+.|+.++++++.+..... ..+++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+
T Consensus 206 ~-----------l~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 206 T-----------LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp E-----------EECCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred c-----------ccCCchhheeeccCCccccccc----ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 3 3455789999999887653221 223689999999998874 3677888999999999999988
Q ss_pred cCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcC
Q 043372 250 RIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIG 329 (342)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 329 (342)
..|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+ +| +..
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~ 343 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LST 343 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCT
T ss_pred CCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhh
Confidence 88888889999999999999987 45666777899999999999988 677788889999999999999984 33 667
Q ss_pred ccccceeeccCCC
Q 043372 330 LSSLSIYLDLSQN 342 (342)
Q Consensus 330 l~~l~~~l~l~~n 342 (342)
+++| ++|++++|
T Consensus 344 ~~~L-~~L~l~~N 355 (597)
T 3oja_B 344 HHTL-KNLTLSHN 355 (597)
T ss_dssp TCCC-SEEECCSS
T ss_pred cCCC-CEEEeeCC
Confidence 7888 89999987
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-35 Score=268.47 Aligned_cols=152 Identities=25% Similarity=0.259 Sum_probs=91.7
Q ss_pred CCcccEEEeccCCCCCCCcc---chhccCCCccEEEecCcccccccC--ccccCcCCCCEEEcCCCcccccCCccccccc
Q 043372 185 TSRLELLEISDTNCGGMLPE---AVGNLSTRLRKLSVGNNQLFGNIP--SGLRNLVNLELLDLGDNQFIGRIPESIGYLQ 259 (342)
Q Consensus 185 ~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 259 (342)
+++|++|++++|.+.+..+. .+..+ ++|++|++++|.+.+... ..+..+++|++|++++|.+. ..|..+..++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAW-PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSS-TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred CccccEEEccCCccccccccchhhhhcc-ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 45555555555544332211 11222 455555555555542211 23455666666666666665 4455555566
Q ss_pred CcceEEccCCeeeeecccc------------------ccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCcc
Q 043372 260 KLQGLWLNGNKFLGEIPSS------------------IGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
+|++|++++|++. .++.. ...+++|++|++++|+++ .+|. ...+++|+.|++++|++++
T Consensus 411 ~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 411 KMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred cccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 6666666666554 22111 125677888888888776 5555 4567888888888888887
Q ss_pred ccchhhcCccccceeeccCCC
Q 043372 322 TIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 322 ~~~~~~~~l~~l~~~l~l~~n 342 (342)
..|..+..++++ ++|++++|
T Consensus 488 ~~~~~~~~l~~L-~~L~l~~N 507 (549)
T 2z81_A 488 VPDGIFDRLTSL-QKIWLHTN 507 (549)
T ss_dssp CCTTGGGGCTTC-CEEECCSS
T ss_pred cCHHHHhcCccc-CEEEecCC
Confidence 777778888888 88888887
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-34 Score=260.40 Aligned_cols=324 Identities=21% Similarity=0.322 Sum_probs=216.8
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+. .+|.. .
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 4565554 68888888888887777777888888888888888888777777888888888888888887 45544 7
Q ss_pred CCCCCEEeCcCCCCCCCCC--ccccCCCCCCcEEEccCCccCCCCCccccCCCCc--cEEEccCCcC--cCCCCC-cc--
Q 043372 83 LSSLSVFDFPVNQLQGSFP--SDLGFTLPNLELLNVADNQFAGPIPASISNTSNL--MTLAIGGNGF--SGKVPS-FE-- 153 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~-~~-- 153 (342)
+++|++|++++|.++ .++ ..+. .+++|++|++++|.+... .+..+++| +++++++|.+ ....+. +.
T Consensus 120 l~~L~~L~Ls~N~l~-~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 120 MASLRHLDLSFNDFD-VLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CTTCSEEECCSSCCS-BCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred cccCCEEECCCCCcc-ccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccccccc
Confidence 888888888888877 433 3444 678888888888777642 23333444 7777777665 222111 11
Q ss_pred ------------------------ccC-----------------------------------------------------
Q 043372 154 ------------------------NLH----------------------------------------------------- 156 (342)
Q Consensus 154 ------------------------~~~----------------------------------------------------- 156 (342)
.++
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 112
Q ss_pred --cccEEEcccCCCCC-CCCCch------------------------hhhhhh----------------------ccCCc
Q 043372 157 --KLREVSISQNPLGN-GEKDDL------------------------EFVNSL----------------------VNTSR 187 (342)
Q Consensus 157 --~L~~l~l~~~~~~~-~~~~~~------------------------~~~~~l----------------------~~~~~ 187 (342)
+|+.|++++|.+.+ .....+ .....+ ..+++
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 354 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence 34444444443321 110000 000001 45667
Q ss_pred ccEEEeccCCCCCCCccchhccCCCccEEEecCcccccc--cCccccCcCCCCEEEcCCCcccccCC-cccccccCcceE
Q 043372 188 LELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGN--IPSGLRNLVNLELLDLGDNQFIGRIP-ESIGYLQKLQGL 264 (342)
Q Consensus 188 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L 264 (342)
|+++++++|.+.+..+..+..+ ++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred ceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 7777777777666555555555 5777777777776642 23456677777788887777775333 346667778888
Q ss_pred EccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchh-hcCccccceeeccCCC
Q 043372 265 WLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE-VIGLSSLSIYLDLSQN 342 (342)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~l~~l~~~l~l~~n 342 (342)
++++|.+.+..+..+. ++|++|++++|++. .+|..+..+++|+.|++++|.++ .+|.. +..++++ ++|++++|
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L-~~L~l~~N 507 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL-QYIWLHDN 507 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC-CCEECCSC
T ss_pred ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC-CEEEecCC
Confidence 8888877655554443 68888888888887 67777778899999999999998 56665 7888888 89999887
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=271.96 Aligned_cols=309 Identities=21% Similarity=0.209 Sum_probs=227.7
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccc-cCCchhhcCccCccEEEecccccccccCcccc
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFV-GRIPETLRDIKRMRIIAFGINKLSGEIPFSIY 81 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 81 (342)
++|. -.+++++|++++|.+++..+..|.++++|++|++++|... ...+.+|.++++|++|++++|.+....|..+.
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 5675 3478999999999998888889999999999999999544 34477899999999999999999988899999
Q ss_pred CCCCCCEEeCcCCCCCCCCCcc-ccCCCCCCcEEEccCCccCCCCC-ccccCCCCccEEEccCCcCcCCCCC-cccc--C
Q 043372 82 NLSSLSVFDFPVNQLQGSFPSD-LGFTLPNLELLNVADNQFAGPIP-ASISNTSNLMTLAIGGNGFSGKVPS-FENL--H 156 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~--~ 156 (342)
.+++|++|++++|.+.+..+.. .+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+....+. +..+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999999999998655543 34479999999999999876544 5688999999999999988775544 5555 7
Q ss_pred cccEEEcccCCCCCCCCCchhhhhhhccCC------cccEEEeccCCCCCCCccchhcc---------------------
Q 043372 157 KLREVSISQNPLGNGEKDDLEFVNSLVNTS------RLELLEISDTNCGGMLPEAVGNL--------------------- 209 (342)
Q Consensus 157 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~l~l~~~~~~~~~~~~~~~~--------------------- 209 (342)
+|+.++++.|.+...... .+..++ .|+.+++++|.+....+..+...
T Consensus 175 ~L~~L~L~~n~l~~~~~~------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSV------DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp SSCCCEECCSBSCCCCCC------CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccceEECCCCcccccccc------chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 888888888877653221 222222 47888888775543333222211
Q ss_pred ----------------CCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeee
Q 043372 210 ----------------STRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLG 273 (342)
Q Consensus 210 ----------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 273 (342)
++++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 1456777777776665556666667777777777777766666666667777777777777665
Q ss_pred eccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCc
Q 043372 274 EIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 274 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 55666667777777777777766555556666777777777777666
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-34 Score=261.20 Aligned_cols=331 Identities=18% Similarity=0.202 Sum_probs=180.6
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..++.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 4555443 56777777777776655666777777777777777776666666777777777777777776555555677
Q ss_pred CCCCCEEeCcCCCCCCC-CCccccCCCCCCcEEEccCCccCCCC-CccccCCCCccEEEccCCcCcCCCCC-cc------
Q 043372 83 LSSLSVFDFPVNQLQGS-FPSDLGFTLPNLELLNVADNQFAGPI-PASISNTSNLMTLAIGGNGFSGKVPS-FE------ 153 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~------ 153 (342)
+++|++|++++|.+++. .|..+ ..+++|++|++++|...+.+ +..+..+++|++|++++|.+....+. +.
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCCcEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 77777777777766531 23333 35667777777666533233 24566666777777766665543222 33
Q ss_pred ------------------ccCcccEEEcccCCCCCCCCCch-------------------------hhhhhhccCCcccE
Q 043372 154 ------------------NLHKLREVSISQNPLGNGEKDDL-------------------------EFVNSLVNTSRLEL 190 (342)
Q Consensus 154 ------------------~~~~L~~l~l~~~~~~~~~~~~~-------------------------~~~~~l~~~~~L~~ 190 (342)
.+++|+.+++++|.+........ .+...+..+++++.
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 35566666666665544210000 00011112222222
Q ss_pred EE-----------------------------------------------------------eccCCCCCCCccchhccCC
Q 043372 191 LE-----------------------------------------------------------ISDTNCGGMLPEAVGNLST 211 (342)
Q Consensus 191 l~-----------------------------------------------------------l~~~~~~~~~~~~~~~~~~ 211 (342)
++ ++++.+. .++..+....+
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 22 2222221 12222211124
Q ss_pred CccEEEecCccccccc---CccccCcCCCCEEEcCCCcccccCC--cccccccCcceEEccCCeeeeeccccccCCCCcc
Q 043372 212 RLRKLSVGNNQLFGNI---PSGLRNLVNLELLDLGDNQFIGRIP--ESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLT 286 (342)
Q Consensus 212 ~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 286 (342)
+|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++. .+|..+..+++|+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~ 413 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc
Confidence 5666666666554332 1224455666666666666553221 23555666667777666665 5555566666666
Q ss_pred EEecCCcccccccCcc------------------ccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 287 ILDFSANLLEGSIPSS------------------LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 287 ~L~l~~n~~~~~~~~~------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+|++++|.+. .++.. ...+++|+.|++++|+++ .+|. ...+++| ++|+|++|
T Consensus 414 ~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L-~~L~Ls~N 483 (549)
T 2z81_A 414 FLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVL-LVMKISRN 483 (549)
T ss_dssp EEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTC-CEEECCSS
T ss_pred EEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccC-CEEecCCC
Confidence 6666666554 22211 124556666666666666 4554 3455666 66666665
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=257.43 Aligned_cols=315 Identities=21% Similarity=0.248 Sum_probs=219.8
Q ss_pred cEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCC
Q 043372 15 RILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVN 94 (342)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~ 94 (342)
++++++++.++. .+..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999999984 455444 89999999999999888889999999999999999999888899999999999999999
Q ss_pred CCCCCCCccccCCCCCCcEEEccCCccCC-CCCccccCCCCccEEEccCCcCcCCCCCccccCcc--cEEEcccCCC--C
Q 043372 95 QLQGSFPSDLGFTLPNLELLNVADNQFAG-PIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKL--REVSISQNPL--G 169 (342)
Q Consensus 95 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~l~l~~~~~--~ 169 (342)
.++ .+|.. .+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.. ..+..+++| +.+++++|.+ .
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccc
Confidence 998 77766 59999999999999986 467889999999999999998875 346667777 8999888876 2
Q ss_pred CCCCCchhh--------------------------------------------------hhhhccC--------------
Q 043372 170 NGEKDDLEF--------------------------------------------------VNSLVNT-------------- 185 (342)
Q Consensus 170 ~~~~~~~~~--------------------------------------------------~~~l~~~-------------- 185 (342)
......... ...+..+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 111100000 0011111
Q ss_pred -------------CcccEEEeccCCCCCCCccch-----h----------------------------------------
Q 043372 186 -------------SRLELLEISDTNCGGMLPEAV-----G---------------------------------------- 207 (342)
Q Consensus 186 -------------~~L~~l~l~~~~~~~~~~~~~-----~---------------------------------------- 207 (342)
++|++++++++.+.+.++..+ .
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 245555555554432222222 0
Q ss_pred -------ccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccc--cCCcccccccCcceEEccCCeeeeeccc-
Q 043372 208 -------NLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIG--RIPESIGYLQKLQGLWLNGNKFLGEIPS- 277 (342)
Q Consensus 208 -------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 277 (342)
...++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+.+|.
T Consensus 314 l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 122456666666666654455555566666666666666653 2334455566666666666666543443
Q ss_pred cccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 278 SIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 278 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
.+..+++|++|++++|.+.+..+..+. ++|+.|++++|.++ .+|..+..+++| ++|++++|
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L-~~L~L~~N 454 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL-QELNVASN 454 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC-CEEECCSS
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC-CEEECCCC
Confidence 355566666666666666554444432 57788888888877 677777788888 88888876
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.4e-33 Score=248.69 Aligned_cols=306 Identities=25% Similarity=0.367 Sum_probs=204.1
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|+ +..+++||+|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+.+.. .+..
T Consensus 60 ~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~ 132 (466)
T 1o6v_A 60 SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKN 132 (466)
T ss_dssp CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh--HHcC
Confidence 3443 5677788888888877765433 7777778888887777775543 777777777777777776432 2667
Q ss_pred CCCCCEEeCcCCCCCCCCCccc--------------------cCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccC
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDL--------------------GFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGG 142 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~--------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 142 (342)
+++|++|++++|.+. .++. + ...+++|++|++++|.+... ..+..+++|++|++++
T Consensus 133 l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 133 LTNLNRLELSSNTIS-DISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATN 208 (466)
T ss_dssp CTTCSEEEEEEEEEC-CCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccC-CChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecC
Confidence 777777777777665 3321 1 12355566666665555422 2355566666666666
Q ss_pred CcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcc
Q 043372 143 NGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQ 222 (342)
Q Consensus 143 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 222 (342)
|.+....+ +..+++|+.|++++|.+... ..+..+++|+.+++++|.+....+ +..+ ++|++|++++|.
T Consensus 209 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~ 276 (466)
T 1o6v_A 209 NQISDITP-LGILTNLDELSLNGNQLKDI--------GTLASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQ 276 (466)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSC
T ss_pred Cccccccc-ccccCCCCEEECCCCCcccc--------hhhhcCCCCCEEECCCCccccchh--hhcC-CCCCEEECCCCc
Confidence 66554433 55566666666666655432 245566777777777776654322 3333 678888888877
Q ss_pred cccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCcc
Q 043372 223 LFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSS 302 (342)
Q Consensus 223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 302 (342)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..
T Consensus 277 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 277 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred cCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 764322 6677888888888887764332 6677888888888888775444 66778888888888887743 46
Q ss_pred ccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 303 LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 303 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+..+++|+.|++++|++.+..| +..++++ ++|++++|
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n 385 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRI-TQLGLNDQ 385 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTC-CEEECCCE
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCC-CEEeccCC
Confidence 7778888888888888886555 7778888 88888775
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=258.47 Aligned_cols=319 Identities=19% Similarity=0.229 Sum_probs=221.4
Q ss_pred CcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCC
Q 043372 5 PGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLS 84 (342)
Q Consensus 5 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 84 (342)
+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..++.++
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 34567777888888877777766666777777777777777777766666777777777777777776644444566677
Q ss_pred CCCEEeCcCCCCCC-CCCccccCCCCCCcEEEccCCccCCCCC-------------------------------------
Q 043372 85 SLSVFDFPVNQLQG-SFPSDLGFTLPNLELLNVADNQFAGPIP------------------------------------- 126 (342)
Q Consensus 85 ~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------------------------- 126 (342)
+|++|++++|.+.+ .+|..+. .+++|++|++++|.+.+..+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~ 203 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred cccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcce
Confidence 77777777766653 2454444 46666666666554321111
Q ss_pred ------------------------------------------------------------------------ccccCCCC
Q 043372 127 ------------------------------------------------------------------------ASISNTSN 134 (342)
Q Consensus 127 ------------------------------------------------------------------------~~~~~~~~ 134 (342)
..+..+++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 11122334
Q ss_pred ccEEEccCCcCcCCCCCc------------------------------------------cccCcccEEEcccCCCCCCC
Q 043372 135 LMTLAIGGNGFSGKVPSF------------------------------------------ENLHKLREVSISQNPLGNGE 172 (342)
Q Consensus 135 L~~L~l~~~~~~~~~~~~------------------------------------------~~~~~L~~l~l~~~~~~~~~ 172 (342)
|+++++++|.+...+..+ ..+++|+.+++++|.+....
T Consensus 284 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 363 (570)
T 2z63_A 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363 (570)
T ss_dssp CSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred ccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccc
Confidence 444444444333221111 34566677777666554321
Q ss_pred C--C-----------------chhhhhhhccCCcccEEEeccCCCCCCCc-cchhccCCCccEEEecCcccccccCcccc
Q 043372 173 K--D-----------------DLEFVNSLVNTSRLELLEISDTNCGGMLP-EAVGNLSTRLRKLSVGNNQLFGNIPSGLR 232 (342)
Q Consensus 173 ~--~-----------------~~~~~~~l~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 232 (342)
. . .......+..+++|+.++++++.+....+ ..+..+ ++|++|++++|.+.+..+..+.
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTT
T ss_pred cccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhh
Confidence 0 0 00111124566677777777766554433 234444 7999999999999877888899
Q ss_pred CcCCCCEEEcCCCccc-ccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcE
Q 043372 233 NLVNLELLDLGDNQFI-GRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLIS 311 (342)
Q Consensus 233 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 311 (342)
.+++|++|++++|.+. +..|..+..+++|+.|++++|++.+..|..+..+++|++|++++|++++..+..+.++++|+.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 9999999999999987 467888999999999999999999888899999999999999999999877788999999999
Q ss_pred EEcCCCcCccccch
Q 043372 312 LNLSNNNLSGTIPT 325 (342)
Q Consensus 312 l~l~~~~~~~~~~~ 325 (342)
+++++|++.+..|.
T Consensus 523 L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 523 IWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCBCCCTTT
T ss_pred EEecCCcccCCCcc
Confidence 99999999987763
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=267.51 Aligned_cols=331 Identities=19% Similarity=0.204 Sum_probs=255.9
Q ss_pred CCcccCCCCcccEEEeecccccc-CccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCcc--c
Q 043372 4 VPGKLGSIPKLRILTVHANYLSG-EIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFS--I 80 (342)
Q Consensus 4 ~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~--~ 80 (342)
.|..|+++++||+|++++|...+ ..+.+|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..+.. +
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 46788999999999999985543 44788999999999999999999888999999999999999999998655554 8
Q ss_pred cCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCC--CCccEEEccCCcCcCCCCC-ccccCc
Q 043372 81 YNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNT--SNLMTLAIGGNGFSGKVPS-FENLHK 157 (342)
Q Consensus 81 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~-~~~~~~ 157 (342)
..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+. +..+++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 8999999999999999855454444479999999999999887777777666 8899999999887764433 444444
Q ss_pred ------ccEEEcccCCCCCCCCCchh------------------------------hhhhhcc--CCcccEEEeccCCCC
Q 043372 158 ------LREVSISQNPLGNGEKDDLE------------------------------FVNSLVN--TSRLELLEISDTNCG 199 (342)
Q Consensus 158 ------L~~l~l~~~~~~~~~~~~~~------------------------------~~~~l~~--~~~L~~l~l~~~~~~ 199 (342)
|+.+++++|.+.......+. ....+.. .++++.|+++++.+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence 89999988865432111000 0011112 368999999998877
Q ss_pred CCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccc
Q 043372 200 GMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSI 279 (342)
Q Consensus 200 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 279 (342)
...+..+..+ ++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+
T Consensus 280 ~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 358 (844)
T 3j0a_A 280 SLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358 (844)
T ss_dssp EECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred ccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh
Confidence 6666666666 789999999999987777888899999999999999987778888999999999999999876666778
Q ss_pred cCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccch----------------------hhcCccccceee
Q 043372 280 GNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT----------------------EVIGLSSLSIYL 337 (342)
Q Consensus 280 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~----------------------~~~~l~~l~~~l 337 (342)
..+++|++|++++|.+.+ ++ .+++|+.+++++|++. .+|. .+..+++| ++|
T Consensus 359 ~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L 431 (844)
T 3j0a_A 359 KFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHL-QIL 431 (844)
T ss_dssp CSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEE
T ss_pred cCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCcc-cee
Confidence 889999999999998773 22 2556666666666555 2332 23467777 788
Q ss_pred ccCCC
Q 043372 338 DLSQN 342 (342)
Q Consensus 338 ~l~~n 342 (342)
+|++|
T Consensus 432 ~Ls~N 436 (844)
T 3j0a_A 432 ILNQN 436 (844)
T ss_dssp EEESC
T ss_pred eCCCC
Confidence 87776
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7e-33 Score=256.43 Aligned_cols=335 Identities=23% Similarity=0.214 Sum_probs=238.1
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +.+++|++++|.++...+.+|.++++|++|+|++|.++++.+.+|.++++|++|+|++|++....+..|..
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4564443 47889999999888777788888999999999999888877888888999999999999888666667888
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCC-CCccccCCCCccEEEccCCcCcCCCCC-ccccC----
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGP-IPASISNTSNLMTLAIGGNGFSGKVPS-FENLH---- 156 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~---- 156 (342)
+++|++|++++|.++ .++...+..+++|++|++++|.+... .|..+..+++|++|++++|.+....+. +..+.
T Consensus 123 L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 123 LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 999999999998887 66655555788899999988887643 466677888888888888776443221 11100
Q ss_pred -----------------------cccEEEcc-------------------------------------------------
Q 043372 157 -----------------------KLREVSIS------------------------------------------------- 164 (342)
Q Consensus 157 -----------------------~L~~l~l~------------------------------------------------- 164 (342)
.++.+.+.
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 01111111
Q ss_pred -------------------------------------------------------cCCCCCCCCCch-------------
Q 043372 165 -------------------------------------------------------QNPLGNGEKDDL------------- 176 (342)
Q Consensus 165 -------------------------------------------------------~~~~~~~~~~~~------------- 176 (342)
.+.+........
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 110000000000
Q ss_pred hhhhhhccCCcccEEEeccCCCCCC-------------------------------------------------Cc-cch
Q 043372 177 EFVNSLVNTSRLELLEISDTNCGGM-------------------------------------------------LP-EAV 206 (342)
Q Consensus 177 ~~~~~l~~~~~L~~l~l~~~~~~~~-------------------------------------------------~~-~~~ 206 (342)
........+++|+.++++.+.+... .+ ..+
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence 0000112345666666665543210 00 011
Q ss_pred hccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCccc-ccCCcccccccCcceEEccCCeeeeeccccccCCCCc
Q 043372 207 GNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFI-GRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASL 285 (342)
Q Consensus 207 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 285 (342)
..+ ++++.++++.|.+....+..+..++.++.|++++|.+. ...|..+..+++|+.|++++|++.+..|..|.++++|
T Consensus 442 ~~l-~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 442 LSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccc-cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 112 45666666666666556666777888999999988754 3567788889999999999999998888899999999
Q ss_pred cEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCc-cccceeeccCCC
Q 043372 286 TILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL-SSLSIYLDLSQN 342 (342)
Q Consensus 286 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l-~~l~~~l~l~~n 342 (342)
++|++++|++.+..+..+..+++|+.|++++|.+++..|..+..+ ++| ++|+|++|
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L-~~L~L~~N 577 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQN 577 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC-CEEECTTC
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC-CEEEeeCC
Confidence 999999999997778889999999999999999998888888888 467 99999987
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.1e-33 Score=253.33 Aligned_cols=320 Identities=18% Similarity=0.224 Sum_probs=233.7
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
.+...++++++++.++. .|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 44556899999999985 444443 899999999999998888899999999999999999998888999999999999
Q ss_pred eCcCCCCCCCCCccccCCCCCCcEEEccCCccCCC-CCccccCCCCccEEEccCCcCcCCCCCccccCcc--cEEEcccC
Q 043372 90 DFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGP-IPASISNTSNLMTLAIGGNGFSGKVPSFENLHKL--REVSISQN 166 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~l~l~~~ 166 (342)
++++|.++ .+|.. .+++|++|++++|.+.+. .|..+.++++|++|++++|.+... .+..++++ +.+++++|
T Consensus 106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecc
Confidence 99999998 78876 599999999999999853 457899999999999999988752 35555666 99999998
Q ss_pred CC--CCCCCCchhh------------------------------------------------hhhhc-------------
Q 043372 167 PL--GNGEKDDLEF------------------------------------------------VNSLV------------- 183 (342)
Q Consensus 167 ~~--~~~~~~~~~~------------------------------------------------~~~l~------------- 183 (342)
.+ .......... ...+.
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 77 3221111000 00000
Q ss_pred --------------cCCcccEEEeccCCCCCCCccchh------------------------------------------
Q 043372 184 --------------NTSRLELLEISDTNCGGMLPEAVG------------------------------------------ 207 (342)
Q Consensus 184 --------------~~~~L~~l~l~~~~~~~~~~~~~~------------------------------------------ 207 (342)
..++|++++++++.+.+.++..+.
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 112566666666655433333220
Q ss_pred ----------ccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCccccc--CCcccccccCcceEEccCCeeeeec
Q 043372 208 ----------NLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGR--IPESIGYLQKLQGLWLNGNKFLGEI 275 (342)
Q Consensus 208 ----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (342)
..++++++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+.+
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred CCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 2235677777777777665666677777777777777777642 2345667777777777777776534
Q ss_pred cc-cccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 276 PS-SIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 276 ~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
|. .+..+++|++|++++|.+++..+..+. ++|+.|++++|.++ .+|..+..++++ ++|++++|
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L-~~L~L~~N 483 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL-QELNVASN 483 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC-SEEECCSS
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC-CEEECCCC
Confidence 43 466677778888887777655544433 68888888888888 678777788888 99999887
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-32 Score=233.73 Aligned_cols=289 Identities=24% Similarity=0.392 Sum_probs=241.2
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+.++++|++|++++|.+.+. +. +..
T Consensus 58 ~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~ 130 (347)
T 4fmz_A 58 SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LAN 130 (347)
T ss_dssp CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTT
T ss_pred cchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hcc
Confidence 4443 7889999999999999986544 89999999999999998864 3689999999999999999844 33 889
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVS 162 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 162 (342)
+++|+++++++|......+. +. .+++|++|+++++.+....+ +..+++|+++++++|.+....+ +..+++|+.++
T Consensus 131 l~~L~~L~l~~n~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 205 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSP-LS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFT 205 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEE
T ss_pred CCceeEEECCCCCCcccccc-hh-hCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceee
Confidence 99999999999966534443 43 69999999999998874432 7889999999999999886655 88999999999
Q ss_pred cccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEc
Q 043372 163 ISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDL 242 (342)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 242 (342)
++++.+.... .+..+++|+++++++|.+....+ +..+ ++|++|++++|.+... ..+..+++|++|++
T Consensus 206 l~~n~l~~~~--------~~~~~~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 206 AYVNQITDIT--------PVANMTRLNSLKIGNNKITDLSP--LANL-SQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272 (347)
T ss_dssp CCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred cccCCCCCCc--------hhhcCCcCCEEEccCCccCCCcc--hhcC-CCCCEEECCCCccCCC--hhHhcCCCcCEEEc
Confidence 9999887532 27788999999999998875433 4444 7999999999998743 56788999999999
Q ss_pred CCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCc
Q 043372 243 GDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+ +..+++|+.+++++|+++
T Consensus 273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99998854 457889999999999999987788889999999999999999986544 888999999999999986
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1e-31 Score=228.65 Aligned_cols=287 Identities=19% Similarity=0.273 Sum_probs=193.7
Q ss_pred cccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCc
Q 043372 13 KLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFP 92 (342)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~ 92 (342)
++++++++++.++. .+..+ .+.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56666666666553 23222 2566667777776666555566666777777777776665556666666777777776
Q ss_pred CCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcC--C-CCCccccCcccEEEcccCCCC
Q 043372 93 VNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSG--K-VPSFENLHKLREVSISQNPLG 169 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~-~~~~~~~~~L~~l~l~~~~~~ 169 (342)
+|.++ .+|..++ ++|++|++++|.+....+..+..+++|++|++++|.+.. . ...+..+++|+.++++
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~----- 179 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA----- 179 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-----
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC-----
Confidence 66665 5554432 566666666666654444455566666666666665542 1 1124444445555544
Q ss_pred CCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccc
Q 043372 170 NGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIG 249 (342)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (342)
++.+.. ++..+ +++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 180 -------------------------~n~l~~-l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 180 -------------------------DTNITT-IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp -------------------------SSCCCS-CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred -------------------------CCcccc-CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 444332 22211 1578889998888876667788888999999999999887
Q ss_pred cCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccC------CCCCcEEEcCCCcCcc--
Q 043372 250 RIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGK------CQNLISLNLSNNNLSG-- 321 (342)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~l~l~~~~~~~-- 321 (342)
..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.. .+.++.+++.+|++..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 77777888899999999999887 77888888899999999999988655555543 3788999999999863
Q ss_pred ccchhhcCccccceeeccCCC
Q 043372 322 TIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 322 ~~~~~~~~l~~l~~~l~l~~n 342 (342)
..|..+..+..+ +.++|++|
T Consensus 310 i~~~~f~~~~~l-~~l~L~~N 329 (330)
T 1xku_A 310 IQPSTFRCVYVR-AAVQLGNY 329 (330)
T ss_dssp SCGGGGTTCCCG-GGEEC---
T ss_pred cCccccccccce-eEEEeccc
Confidence 446677778888 88999987
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.5e-32 Score=231.67 Aligned_cols=286 Identities=20% Similarity=0.279 Sum_probs=204.2
Q ss_pred cccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCc
Q 043372 13 KLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFP 92 (342)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~ 92 (342)
++++++++++.++. .+..+ .++|++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 67778887777763 33333 3677788888887776666677778888888888887776667777777888888888
Q ss_pred CCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcC--CC-CCccccCcccEEEcccCCCC
Q 043372 93 VNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSG--KV-PSFENLHKLREVSISQNPLG 169 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~~L~~l~l~~~~~~ 169 (342)
+|.++ .+|..++ ++|++|++++|.+....+..+..+++|++|++++|.+.. .. ..+..+ +|+.+++++|.+.
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 77776 6665543 677777777777765555556777777777777776642 11 123333 5555555555443
Q ss_pred CCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccc
Q 043372 170 NGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIG 249 (342)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (342)
. ++..+ +++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 186 ~-------------------------------l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 186 G-------------------------------IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp S-------------------------------CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred c-------------------------------cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 2 12111 1568888888888876666778888889999999888887
Q ss_pred cCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccC------CCCCcEEEcCCCcCc--c
Q 043372 250 RIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGK------CQNLISLNLSNNNLS--G 321 (342)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~l~l~~~~~~--~ 321 (342)
..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++..+..+.. .+.|+.+++.+|++. .
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 76667888889999999999887 77777888889999999999888655555544 367889999999987 5
Q ss_pred ccchhhcCccccceeeccCCC
Q 043372 322 TIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 322 ~~~~~~~~l~~l~~~l~l~~n 342 (342)
..|.++..++.+ +.+++++|
T Consensus 311 ~~~~~~~~l~~L-~~l~l~~n 330 (332)
T 2ft3_A 311 VQPATFRCVTDR-LAIQFGNY 330 (332)
T ss_dssp SCGGGGTTBCCS-TTEEC---
T ss_pred cCcccccccchh-hhhhcccc
Confidence 567778888888 88998886
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-31 Score=233.04 Aligned_cols=285 Identities=16% Similarity=0.172 Sum_probs=244.7
Q ss_pred CCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcE
Q 043372 34 NLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLEL 113 (342)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 113 (342)
.++++++++++++.++...+..+.++++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 3589999999999999877777899999999999999999777789999999999999999998 555544447999999
Q ss_pred EEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEE
Q 043372 114 LNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLE 192 (342)
Q Consensus 114 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~ 192 (342)
|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+... .+..+++|+.++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~l~~L~~L~ 192 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHAN 192 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---------CGGGCTTCSEEE
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---------ccccccccceee
Confidence 99999999855555578999999999999999887665 89999999999999988753 245678999999
Q ss_pred eccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeee
Q 043372 193 ISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFL 272 (342)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 272 (342)
++++.+... ..++.+++|++++|.+... +. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.
T Consensus 193 l~~n~l~~~------~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 193 VSYNLLSTL------AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp CCSSCCSEE------ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ccccccccc------CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 998876532 2336899999999998744 22 2358999999999999753 57888999999999999999
Q ss_pred eeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 273 GEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 273 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+..+..+..+++|++|++++|++. .++..+..+++|+.|++++|++. .+|..+..++++ ++|++++|
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~L~~N 328 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHN 328 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSS
T ss_pred CcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcC-CEEECCCC
Confidence 888899999999999999999998 46777788999999999999999 678888889999 99999987
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-31 Score=235.87 Aligned_cols=299 Identities=24% Similarity=0.332 Sum_probs=207.7
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
.++++++|+++++.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 367999999999988743 3 47889999999999999987654 8999999999999999985444 8999999999
Q ss_pred eCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCC---------------------CCccEEEccCCcCcCC
Q 043372 90 DFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNT---------------------SNLMTLAIGGNGFSGK 148 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------------------~~L~~L~l~~~~~~~~ 148 (342)
++++|.++ .++. +..+++|++|++++|.+... + .+..+ ++|++|++++|.+...
T Consensus 118 ~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 118 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence 99999998 5554 34799999999999887642 2 24444 4555555555544432
Q ss_pred CCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccC
Q 043372 149 VPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIP 228 (342)
Q Consensus 149 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 228 (342)
+.+..+++|+.|++++|.+.... .+..+++|+.+++++|.+... ..+..+ ++|++|++++|.+.+..+
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDIT--------PLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQISNLAP 260 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG
T ss_pred -hhhccCCCCCEEEecCCcccccc--------cccccCCCCEEECCCCCcccc--hhhhcC-CCCCEEECCCCccccchh
Confidence 22445555555555555444311 144456666666666655432 233333 567777777776653322
Q ss_pred ccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCC
Q 043372 229 SGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQN 308 (342)
Q Consensus 229 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 308 (342)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+.+..+ +..+++
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 332 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc
Confidence 5666777777777777664332 5667777777777777764332 6677788888888887775443 667788
Q ss_pred CcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 309 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 309 L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
|+.|++++|++.+. ..+..++++ ++|++++|
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L-~~L~l~~n 363 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNI-NWLSAGHN 363 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTC-CEEECCSS
T ss_pred CCEeECCCCccCCc--hhhccCCCC-CEEeCCCC
Confidence 88888888888753 467778888 88888876
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.6e-31 Score=234.05 Aligned_cols=300 Identities=20% Similarity=0.200 Sum_probs=203.0
Q ss_pred CcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCC
Q 043372 5 PGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLS 84 (342)
Q Consensus 5 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 84 (342)
+..++++++|++|++++|.+++. + .+..+++|++|++++|.+++. + +..+++|++|++++|.+.+. + ++.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 44566788899999998888764 3 578888999999999988865 2 77888899999999888753 3 78888
Q ss_pred CCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcc
Q 043372 85 SLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSIS 164 (342)
Q Consensus 85 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~ 164 (342)
+|++|++++|.++ .++ + ..+++|++|++++|.+.+. .+..+++|++|++++|...... .+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLT-KLD--V-SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCS-CCC--C-TTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCC-eec--C-CCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECC
Confidence 9999999988887 454 3 3688889999988888753 2667888888888888543333 46777888888888
Q ss_pred cCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCC
Q 043372 165 QNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGD 244 (342)
Q Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 244 (342)
+|.+...+ +..+++|+.+++++|.+... .+..+ ++|++|++++|++.+ ++ +..+++|+.|++++
T Consensus 179 ~n~l~~l~---------l~~l~~L~~L~l~~N~l~~~---~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 179 FNKITELD---------VSQNKLLNRLNCDTNNITKL---DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp SSCCCCCC---------CTTCTTCCEEECCSSCCSCC---CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCccceec---------cccCCCCCEEECcCCcCCee---ccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 88776531 45667788888877776643 23344 677888888877764 33 56677788888887
Q ss_pred CcccccCCccccccc-------CcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCc--------cccCCCCC
Q 043372 245 NQFIGRIPESIGYLQ-------KLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPS--------SLGKCQNL 309 (342)
Q Consensus 245 ~~~~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~L 309 (342)
|.+.+..+..+..+. +|+.+++++|...+.+| +..+++|+.|++++|...+.++. .+.++++|
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 777654333333222 33444444444433333 34556666666666654433322 24445666
Q ss_pred cEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 310 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+.|++++|.+++ ++ +..++.| ++|++++|
T Consensus 321 ~~L~L~~N~l~~-l~--l~~l~~L-~~L~l~~N 349 (457)
T 3bz5_A 321 VYLYLNNTELTE-LD--VSHNTKL-KSLSCVNA 349 (457)
T ss_dssp CEEECTTCCCSC-CC--CTTCTTC-SEEECCSS
T ss_pred CEEECCCCcccc-cc--cccCCcC-cEEECCCC
Confidence 666666666664 22 5566666 66666655
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.6e-32 Score=246.94 Aligned_cols=296 Identities=18% Similarity=0.187 Sum_probs=250.1
Q ss_pred CCCcc-cCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCcccc
Q 043372 3 KVPGK-LGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIY 81 (342)
Q Consensus 3 ~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 81 (342)
.+|.. ++++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+....+..+.
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 45544 57899999999999999988888999999999999999999998888899999999999999999966566679
Q ss_pred CCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEE
Q 043372 82 NLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREV 161 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 161 (342)
.+++|++|++++|.+. .++...+..+++|++|++++|.+.+. .+..+++|+.+++++|.+... ...++|+.|
T Consensus 145 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L 216 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL----AIPIAVEEL 216 (597)
T ss_dssp TCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE----ECCTTCSEE
T ss_pred cCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc----cCCchhhee
Confidence 9999999999999998 44444444799999999999998754 245679999999999977643 345689999
Q ss_pred EcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEE
Q 043372 162 SISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLD 241 (342)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 241 (342)
++++|.+..... ...++|+.|++++|.+.+. ..+..+ ++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 217 ~ls~n~l~~~~~---------~~~~~L~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 217 DASHNSINVVRG---------PVNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp ECCSSCCCEEEC---------SCCSCCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred eccCCccccccc---------ccCCCCCEEECCCCCCCCC--hhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 999998764321 1236899999999988753 455555 7999999999999888888999999999999
Q ss_pred cCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCcc
Q 043372 242 LGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
+++|.+.+ .+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|++.+
T Consensus 285 Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence 99999985 4566677999999999999998 677778889999999999999874 33 6778999999999999986
Q ss_pred cc
Q 043372 322 TI 323 (342)
Q Consensus 322 ~~ 323 (342)
..
T Consensus 360 ~~ 361 (597)
T 3oja_B 360 NS 361 (597)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.3e-30 Score=237.15 Aligned_cols=317 Identities=23% Similarity=0.257 Sum_probs=238.6
Q ss_pred CcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCC
Q 043372 5 PGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLS 84 (342)
Q Consensus 5 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 84 (342)
|..|+++++||+|++++|.+++..+.+|.++++|++|+|++|++++..+.+|.++++|++|++++|.+....+..|+.++
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 35789999999999999999988788899999999999999999988888899999999999999999976667899999
Q ss_pred CCCEEeCcCCCCCCC-CCccccCCCCCCcEEEccCCccCCCCCccc----------------------------------
Q 043372 85 SLSVFDFPVNQLQGS-FPSDLGFTLPNLELLNVADNQFAGPIPASI---------------------------------- 129 (342)
Q Consensus 85 ~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------------------------- 129 (342)
+|++|++++|.++.. .|..+. .+++|++|++++|.+.+..+..+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 999999999998743 344433 68999999988776542211111
Q ss_pred --------------------------------------------------------------------------------
Q 043372 130 -------------------------------------------------------------------------------- 129 (342)
Q Consensus 130 -------------------------------------------------------------------------------- 129 (342)
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence
Q ss_pred -----------------cCCCCccEEEccCCcCcCCCC--------------------CccccCcccEEEcccCCCCC--
Q 043372 130 -----------------SNTSNLMTLAIGGNGFSGKVP--------------------SFENLHKLREVSISQNPLGN-- 170 (342)
Q Consensus 130 -----------------~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~L~~l~l~~~~~~~-- 170 (342)
.....++.+++.++.+..... ....+++|+.++++.+.+..
T Consensus 308 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 308 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp CSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred cccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccc
Confidence 011122333333322211100 01235566777666553210
Q ss_pred ------------------------CCCC------------------chhhhhhhccCCcccEEEeccCCCCCCCccchhc
Q 043372 171 ------------------------GEKD------------------DLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGN 208 (342)
Q Consensus 171 ------------------------~~~~------------------~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 208 (342)
.... .......+..++.++.++++.+.+....+..+..
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 0000 0001123456677788888887776555555555
Q ss_pred cCCCccEEEecCcccc-cccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccE
Q 043372 209 LSTRLRKLSVGNNQLF-GNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTI 287 (342)
Q Consensus 209 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 287 (342)
. +.++.|++++|... ...+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++
T Consensus 468 ~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 468 L-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp C-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred c-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 5 78999999999754 346778899999999999999999888899999999999999999999777888999999999
Q ss_pred EecCCcccccccCccccCC-CCCcEEEcCCCcCcccc
Q 043372 288 LDFSANLLEGSIPSSLGKC-QNLISLNLSNNNLSGTI 323 (342)
Q Consensus 288 L~l~~n~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~ 323 (342)
|++++|++.+..+..+..+ ++|+.|++++|++.+..
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999999998889999888 68999999999998643
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.5e-29 Score=223.68 Aligned_cols=280 Identities=17% Similarity=0.181 Sum_probs=227.3
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++| .+.++++|++|++++|.+++. .+..+++|++|++++|.+++. + +.++++|++|++++|.+.+ .+ +..
T Consensus 56 ~~~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~ 125 (457)
T 3bz5_A 56 DMT-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQ 125 (457)
T ss_dssp CCT-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred cCh-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCC
Confidence 456 588999999999999999864 288899999999999999875 2 8899999999999999985 33 889
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVS 162 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 162 (342)
+++|++|++++|.+++ ++ + ..+++|++|++++|...+.. .+..+++|++|++++|.+.... +..+++|+.++
T Consensus 126 l~~L~~L~l~~N~l~~-l~--l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~ 197 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE-ID--V-SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLN 197 (457)
T ss_dssp CTTCCEEECTTSCCSC-CC--C-TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEE
T ss_pred CCcCCEEECCCCccce-ec--c-ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEE
Confidence 9999999999999984 44 3 36899999999999655444 4778999999999999988754 88899999999
Q ss_pred cccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCC----
Q 043372 163 ISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLE---- 238 (342)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---- 238 (342)
+++|.+... .+..+++|+.+++++|.+.. ++ +..+ ++|+.|++++|.+.+... ..+++|+
T Consensus 198 l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l-~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l 261 (457)
T 3bz5_A 198 CDTNNITKL---------DLNQNIQLTFLDCSSNKLTE-ID--VTPL-TQLTYFDCSVNPLTELDV---STLSKLTTLHC 261 (457)
T ss_dssp CCSSCCSCC---------CCTTCTTCSEEECCSSCCSC-CC--CTTC-TTCSEEECCSSCCSCCCC---TTCTTCCEEEC
T ss_pred CcCCcCCee---------ccccCCCCCEEECcCCcccc-cC--cccc-CCCCEEEeeCCcCCCcCH---HHCCCCCEEec
Confidence 999988763 36678999999999998876 33 4455 789999999999986543 3445555
Q ss_pred ------EEEcCCCcccccCCcccccccCcceEEccCCeeeeeccc--------cccCCCCccEEecCCcccccccCcccc
Q 043372 239 ------LLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPS--------SIGNLASLTILDFSANLLEGSIPSSLG 304 (342)
Q Consensus 239 ------~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~n~~~~~~~~~~~ 304 (342)
.|++++|.+.+..| ...+++|+.|++++|...+.+|. .+.++++|++|++++|++++ + .+.
T Consensus 262 ~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~ 336 (457)
T 3bz5_A 262 IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVS 336 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCT
T ss_pred cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccc
Confidence 45555555444443 45679999999999976655543 25677899999999999986 3 388
Q ss_pred CCCCCcEEEcCCCcCcc
Q 043372 305 KCQNLISLNLSNNNLSG 321 (342)
Q Consensus 305 ~~~~L~~l~l~~~~~~~ 321 (342)
++++|+.|++++|++++
T Consensus 337 ~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 337 HNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCTTCSEEECCSSCCCB
T ss_pred cCCcCcEEECCCCCCCC
Confidence 99999999999999985
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9.7e-31 Score=220.55 Aligned_cols=250 Identities=27% Similarity=0.413 Sum_probs=173.5
Q ss_pred CCCceeecccccccc--CCchhhcCccCccEEEecc-cccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCc
Q 043372 36 SSLEVLSATANQFVG--RIPETLRDIKRMRIIAFGI-NKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLE 112 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 112 (342)
.+++.|+++++.+.+ ..|..+.++++|++|++++ +.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCC
Confidence 467777777777766 5666777777777777774 666666677777777777777777777655665554 577777
Q ss_pred EEEccCCccCCCCCccccCCCCccEEEccCCcCcCC-CCCccccC-cccEEEcccCCCCCCCCCchhhhhhhccCCcccE
Q 043372 113 LLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGK-VPSFENLH-KLREVSISQNPLGNGEKDDLEFVNSLVNTSRLEL 190 (342)
Q Consensus 113 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 190 (342)
+|++++|.+.+..|..+..+++|++|++++|.+... +..+..++ +|+.+++++|.+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~--------------------- 187 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--------------------- 187 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---------------------
Confidence 777777777766777777777777777777776633 22344444 5555555554332
Q ss_pred EEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCe
Q 043372 191 LEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNK 270 (342)
Q Consensus 191 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (342)
...+..+... + |++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.
T Consensus 188 ---------~~~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 188 ---------GKIPPTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp ---------EECCGGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred ---------ccCChHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 2233333333 2 77777777777666666777778888888888877754444 6667888888888888
Q ss_pred eeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCc
Q 043372 271 FLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 271 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
+.+.+|..+..+++|++|++++|++.+.+|.. .++++|+.+++.+|+..
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 87777878888888888888888888777765 67788888888888743
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.1e-29 Score=214.45 Aligned_cols=276 Identities=18% Similarity=0.246 Sum_probs=204.6
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+. ..|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~- 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP- 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc-
Confidence 4565554 78999999999999877778999999999999999999888899999999999999999998 5555443
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCC--CCCccccCCCCccEEEccCCcCcCCCCCccccCcccE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAG--PIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLRE 160 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 160 (342)
++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+...+..+. ++|+.
T Consensus 121 -~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~ 196 (330)
T 1xku_A 121 -KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTE 196 (330)
T ss_dssp -TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSE
T ss_pred -ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCE
Confidence 79999999999998 6666555579999999999998853 566778899999999999998876554432 66777
Q ss_pred EEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEE
Q 043372 161 VSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELL 240 (342)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 240 (342)
|++++|.+.. ..+..+..+ ++|++|++++|.+.+..+..+..+++|++|
T Consensus 197 L~l~~n~l~~------------------------------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 197 LHLDGNKITK------------------------------VDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp EECTTSCCCE------------------------------ECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred EECCCCcCCc------------------------------cCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 7777765543 222223333 456666666666654445556667777777
Q ss_pred EcCCCcccccCCcccccccCcceEEccCCeeeeecccccc------CCCCccEEecCCccccc--ccCccccCCCCCcEE
Q 043372 241 DLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIG------NLASLTILDFSANLLEG--SIPSSLGKCQNLISL 312 (342)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~l 312 (342)
++++|.+. ..|..+..+++|++|++++|.+.+..+..|. ..+.++.+++++|++.. ..+..+..+++++.+
T Consensus 246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence 77777766 5556666777777777777777644444442 23677888888887652 455677778888888
Q ss_pred EcCCCc
Q 043372 313 NLSNNN 318 (342)
Q Consensus 313 ~l~~~~ 318 (342)
++++|+
T Consensus 325 ~L~~N~ 330 (330)
T 1xku_A 325 QLGNYK 330 (330)
T ss_dssp EC----
T ss_pred EecccC
Confidence 888874
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-29 Score=216.07 Aligned_cols=275 Identities=20% Similarity=0.289 Sum_probs=200.8
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..+.+|.++++|++|++++|.+. ..|..+.
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~- 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP- 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-
T ss_pred ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-
Confidence 5666664 78999999999998777888999999999999999999888899999999999999999998 5555444
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCC--CCCccccCCCCccEEEccCCcCcCCCCCccccCcccE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAG--PIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLRE 160 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 160 (342)
++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+..+ +|+++++++|.+...+..+. ++|+.
T Consensus 123 -~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~ 197 (332)
T 2ft3_A 123 -SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNE 197 (332)
T ss_dssp -TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSC
T ss_pred -ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCE
Confidence 89999999999998 6776656679999999999998852 556667767 99999999999887655433 67888
Q ss_pred EEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEE
Q 043372 161 VSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELL 240 (342)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 240 (342)
|++++|.+.... ...+..+ ++|++|++++|.+.+..+..+..+++|++|
T Consensus 198 L~l~~n~i~~~~------~~~l~~l-------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 198 LHLDHNKIQAIE------LEDLLRY-------------------------SKLYRLGLGHNQIRMIENGSLSFLPTLREL 246 (332)
T ss_dssp CBCCSSCCCCCC------TTSSTTC-------------------------TTCSCCBCCSSCCCCCCTTGGGGCTTCCEE
T ss_pred EECCCCcCCccC------HHHhcCC-------------------------CCCCEEECCCCcCCcCChhHhhCCCCCCEE
Confidence 888877665422 1122333 455556666665554444455666666666
Q ss_pred EcCCCcccccCCcccccccCcceEEccCCeeeeeccccccC------CCCccEEecCCcccc--cccCccccCCCCCcEE
Q 043372 241 DLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGN------LASLTILDFSANLLE--GSIPSSLGKCQNLISL 312 (342)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~l 312 (342)
++++|.+. ..|..+..+++|+.|++++|.+.+..+..+.. .+.|+.+++++|++. +..+..+..+++|+.+
T Consensus 247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 66666666 45555666666777777776666443343432 356778888888765 4556677778888888
Q ss_pred EcCCCc
Q 043372 313 NLSNNN 318 (342)
Q Consensus 313 ~l~~~~ 318 (342)
++++|+
T Consensus 326 ~l~~n~ 331 (332)
T 2ft3_A 326 QFGNYK 331 (332)
T ss_dssp EC----
T ss_pred hccccc
Confidence 887764
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.8e-30 Score=218.85 Aligned_cols=248 Identities=29% Similarity=0.433 Sum_probs=198.0
Q ss_pred cCccEEEeccccccc--ccCccccCCCCCCEEeCcC-CCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCcc
Q 043372 60 KRMRIIAFGINKLSG--EIPFSIYNLSSLSVFDFPV-NQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLM 136 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 136 (342)
.+++.|+++++.+.+ ..|..+..+++|++|++++ |.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 567888888888876 6777778888888888874 777666666665 577778888777777666677777777777
Q ss_pred EEEccCCcCcCCCC-CccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccE
Q 043372 137 TLAIGGNGFSGKVP-SFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRK 215 (342)
Q Consensus 137 ~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 215 (342)
+|++++|.+....+ .+..+++|+.|++++| .+....+..+..+.+.|++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N------------------------------~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN------------------------------RISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS------------------------------CCEEECCGGGGCCCTTCCE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC------------------------------cccCcCCHHHhhhhhcCcE
Confidence 77777776664332 2555555555555554 4433455555566448999
Q ss_pred EEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccc
Q 043372 216 LSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLL 295 (342)
Q Consensus 216 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 295 (342)
|++++|.+.+..+..+..++ |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 99999999878888888877 99999999999988888999999999999999999866555 78889999999999999
Q ss_pred ccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 296 EGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 296 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
.+.+|..+..+++|+.|++++|++++.+|.. ..++++ +++++++|
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L-~~l~l~~N 301 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF-DVSAYANN 301 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGS-CGGGTCSS
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-cccccc-ChHHhcCC
Confidence 9899999999999999999999999888876 788999 99999987
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.5e-29 Score=222.00 Aligned_cols=307 Identities=25% Similarity=0.321 Sum_probs=141.8
Q ss_pred CCCCcccCCCCcccEEEeeccccccCccccccCCC---------------------------------CCceeecccccc
Q 043372 2 GKVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLS---------------------------------SLEVLSATANQF 48 (342)
Q Consensus 2 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------------------~L~~L~l~~~~~ 48 (342)
|++|+.++++++|++|++++|.+.+..+..+++++ +|++|++++|.+
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSL 103 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEEccCCcC
Confidence 55666666666666666666666555554444433 445555555444
Q ss_pred ccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCcc
Q 043372 49 VGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPAS 128 (342)
Q Consensus 49 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 128 (342)
++ .|.. .++|++|++++|.+.+ .+. ..++|++|++++|.++ .+| .+ ..+++|++|++++|.+.+ +|..
T Consensus 104 ~~-lp~~---~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~-~lp-~~-~~l~~L~~L~l~~N~l~~-lp~~ 171 (454)
T 1jl5_A 104 TE-LPEL---PQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLE-KLP-EL-QNSSFLKIIDVDNNSLKK-LPDL 171 (454)
T ss_dssp SS-CCCC---CTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCS-SCC-CC-TTCTTCCEEECCSSCCSC-CCCC
T ss_pred Cc-cccc---cCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCC-CCc-cc-CCCCCCCEEECCCCcCcc-cCCC
Confidence 43 1211 1334444444443331 110 0135555555555555 344 22 245555555555555442 2221
Q ss_pred ccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCc------------hhhhhhhccCCcccEEEeccC
Q 043372 129 ISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDD------------LEFVNSLVNTSRLELLEISDT 196 (342)
Q Consensus 129 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~------------~~~~~~l~~~~~L~~l~l~~~ 196 (342)
.++|++|++++|.+.... .+..+++|+.+++++|.+....... ......+..+++|+++++++|
T Consensus 172 ---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 172 ---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp ---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred ---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 134555555555444422 3444444444444444433211000 000112445666666666666
Q ss_pred CCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccc--cCCcc-------------cccc-cC
Q 043372 197 NCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIG--RIPES-------------IGYL-QK 260 (342)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~-------------~~~~-~~ 260 (342)
.+.. ++. .++++++|++++|.+.+ ++.. .++|++|++++|.+.+ ..+.. +..+ ++
T Consensus 248 ~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~ 318 (454)
T 1jl5_A 248 LLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 318 (454)
T ss_dssp CCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTT
T ss_pred cCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCc
Confidence 5543 121 12456666666655542 2221 2455555555555443 11110 1112 36
Q ss_pred cceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCcc--ccchhhcCc--------
Q 043372 261 LQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSG--TIPTEVIGL-------- 330 (342)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~l-------- 330 (342)
|++|++++|++.+ +|.. +++|++|++++|.++ .+|. .+++|+.|++++|++++ .+|.++..+
T Consensus 319 L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 319 LEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred CCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence 6677777776653 4432 467888888888777 4555 36788888888888887 677777666
Q ss_pred -----cccceeeccCCC
Q 043372 331 -----SSLSIYLDLSQN 342 (342)
Q Consensus 331 -----~~l~~~l~l~~n 342 (342)
+++ ++|++++|
T Consensus 391 i~~~~~~L-~~L~ls~N 406 (454)
T 1jl5_A 391 VPELPQNL-KQLHVETN 406 (454)
T ss_dssp -----------------
T ss_pred cccccCcC-CEEECCCC
Confidence 667 88888876
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.5e-33 Score=246.26 Aligned_cols=332 Identities=17% Similarity=0.192 Sum_probs=234.1
Q ss_pred cCCCCcccEEEeeccccccC----ccccccCCCCCceeeccccccccCCchhh-cCcc----CccEEEeccccccc----
Q 043372 8 LGSIPKLRILTVHANYLSGE----IPSSFGNLSSLEVLSATANQFVGRIPETL-RDIK----RMRIIAFGINKLSG---- 74 (342)
Q Consensus 8 l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~i~~---- 74 (342)
+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.+..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 56788899999999888642 34567778999999999998875444333 3355 69999999998874
Q ss_pred ccCccccCCCCCCEEeCcCCCCCCCCCc----cccCCCCCCcEEEccCCccCCCC----CccccCCCCccEEEccCCcCc
Q 043372 75 EIPFSIYNLSSLSVFDFPVNQLQGSFPS----DLGFTLPNLELLNVADNQFAGPI----PASISNTSNLMTLAIGGNGFS 146 (342)
Q Consensus 75 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 146 (342)
..+..+..+++|++|++++|.+.+..+. .+....++|++|++++|.+.... +..+..+++|++|++++|.+.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 3467788899999999999887532222 22223567999999988876432 445566789999999998876
Q ss_pred CCCCC-c-----cccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCc----cchhccCCCccEE
Q 043372 147 GKVPS-F-----ENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLP----EAVGNLSTRLRKL 216 (342)
Q Consensus 147 ~~~~~-~-----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L 216 (342)
+.... + ...++|+.|++++|.+..... ..+...+..+++|+.|++++|.+.+... ..+....++|++|
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 53222 2 135689999999987765221 1345567788999999999887654322 1121123689999
Q ss_pred EecCcccccc----cCccccCcCCCCEEEcCCCcccccCCccccc-----ccCcceEEccCCeeeee----ccccccCCC
Q 043372 217 SVGNNQLFGN----IPSGLRNLVNLELLDLGDNQFIGRIPESIGY-----LQKLQGLWLNGNKFLGE----IPSSIGNLA 283 (342)
Q Consensus 217 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~----~~~~~~~~~ 283 (342)
++++|.+... ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+. ++..+..++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 9999887643 4555666888999999998876433322222 25888888888887654 455566778
Q ss_pred CccEEecCCcccccccCccccC-----CCCCcEEEcCCCcCcc----ccchhhcCccccceeeccCCC
Q 043372 284 SLTILDFSANLLEGSIPSSLGK-----CQNLISLNLSNNNLSG----TIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 284 ~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~l~l~~~~~~~----~~~~~~~~l~~l~~~l~l~~n 342 (342)
+|++|++++|.+.+..+..+.. .++|+.|++++|.++. .+|..+..++++ ++|++++|
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~~L~l~~N 408 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL-RELDLSNN 408 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC-CEEECCSS
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc-cEEECCCC
Confidence 8888888888877544433332 6788888888888885 667777788888 88888886
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.8e-31 Score=236.47 Aligned_cols=315 Identities=20% Similarity=0.199 Sum_probs=233.0
Q ss_pred CCcccCCCCcccEEEeeccccccCccccc-cCCC----CCceeecccccccc----CCchhhcCccCccEEEeccccccc
Q 043372 4 VPGKLGSIPKLRILTVHANYLSGEIPSSF-GNLS----SLEVLSATANQFVG----RIPETLRDIKRMRIIAFGINKLSG 74 (342)
Q Consensus 4 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~ 74 (342)
++..+.++++|++|++++|.+++.....+ ..++ +|++|++++|.+++ ..+..+.++++|++|++++|.+.+
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 45677889999999999998875433333 2344 79999999999884 347788999999999999999875
Q ss_pred ccCccc-----cCCCCCCEEeCcCCCCCCCC----CccccCCCCCCcEEEccCCccCCCCCcccc-----CCCCccEEEc
Q 043372 75 EIPFSI-----YNLSSLSVFDFPVNQLQGSF----PSDLGFTLPNLELLNVADNQFAGPIPASIS-----NTSNLMTLAI 140 (342)
Q Consensus 75 ~~~~~~-----~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l 140 (342)
..+..+ ...++|++|++++|.+++.. +..+. .+++|++|++++|.+....+..+. ..++|++|++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 443333 23678999999999887422 22222 479999999999987643222222 3569999999
Q ss_pred cCCcCcCC-----CCCccccCcccEEEcccCCCCCCCCCchhhhhh-hccCCcccEEEeccCCCCCC----CccchhccC
Q 043372 141 GGNGFSGK-----VPSFENLHKLREVSISQNPLGNGEKDDLEFVNS-LVNTSRLELLEISDTNCGGM----LPEAVGNLS 210 (342)
Q Consensus 141 ~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-l~~~~~L~~l~l~~~~~~~~----~~~~~~~~~ 210 (342)
++|.+... ...+..+++|+.|++++|.+.+... ..+... ...+++|++|++++|.+... ++..+...
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~- 283 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM--AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK- 283 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH--HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH--HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-
Confidence 99988763 3336788999999999997754110 011122 23589999999999987653 34444445
Q ss_pred CCccEEEecCcccccccCcccc-----CcCCCCEEEcCCCccccc----CCcccccccCcceEEccCCeeeeecccccc-
Q 043372 211 TRLRKLSVGNNQLFGNIPSGLR-----NLVNLELLDLGDNQFIGR----IPESIGYLQKLQGLWLNGNKFLGEIPSSIG- 280 (342)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 280 (342)
++|++|++++|.+.+..+..+. ..++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+.
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 7899999999988643322222 236999999999998754 345566779999999999988755444333
Q ss_pred ---C-CCCccEEecCCccccc----ccCccccCCCCCcEEEcCCCcCccc
Q 043372 281 ---N-LASLTILDFSANLLEG----SIPSSLGKCQNLISLNLSNNNLSGT 322 (342)
Q Consensus 281 ---~-~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~ 322 (342)
. .++|++|++++|.+++ .++..+..+++|++|++++|++...
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 2 6799999999999885 6778888899999999999999854
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=204.97 Aligned_cols=276 Identities=18% Similarity=0.187 Sum_probs=186.3
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
.|+.....+.+++.++. .|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 45555566777666663 333332 577888888887776666677778888888888887776666677778888888
Q ss_pred eCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCC-ccccCCCCccEEEccCCc-CcCCCC-CccccCcccEEEcccC
Q 043372 90 DFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIP-ASISNTSNLMTLAIGGNG-FSGKVP-SFENLHKLREVSISQN 166 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~l~l~~~ 166 (342)
++++|.++ .++...+..+++|++|++++|.+....+ ..+..+++|++|++++|. +....+ .+.++++|+.+++++|
T Consensus 106 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 88888777 5665544467788888888777764333 356777888888887774 444433 3777778888888877
Q ss_pred CCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccc---cCcCCCCEEEcC
Q 043372 167 PLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGL---RNLVNLELLDLG 243 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~ 243 (342)
.+.. .....+..+++|++++++++.+.. .+..+....++|++|++++|.+.+.....+ .....++.++++
T Consensus 185 ~l~~------~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 185 DLQS------YEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp TCCE------ECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred CcCc------cCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 7654 223456677788888887776642 333333333678888888887764433222 234567777777
Q ss_pred CCcccc----cCCcccccccCcceEEccCCeeeeecccc-ccCCCCccEEecCCccccc
Q 043372 244 DNQFIG----RIPESIGYLQKLQGLWLNGNKFLGEIPSS-IGNLASLTILDFSANLLEG 297 (342)
Q Consensus 244 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~ 297 (342)
++.+.+ ..|..+..+++|+.|++++|++. .+|.. +..+++|++|++++|++.+
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 776654 34556677888888888888887 45544 5788888888888888764
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=205.19 Aligned_cols=279 Identities=16% Similarity=0.187 Sum_probs=222.8
Q ss_pred CCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcE
Q 043372 34 NLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLEL 113 (342)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 113 (342)
.|+.....+++++.++.. |..+. ++|++|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCE
Confidence 456666788888888754 44443 58999999999999776678999999999999999998 454444447999999
Q ss_pred EEccCCccCCCCCccccCCCCccEEEccCCcCcCCCC--CccccCcccEEEcccCC-CCCCCCCchhhhhhhccCCcccE
Q 043372 114 LNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVP--SFENLHKLREVSISQNP-LGNGEKDDLEFVNSLVNTSRLEL 190 (342)
Q Consensus 114 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~ 190 (342)
|++++|.+....+..+..+++|++|++++|.+..... .+..+++|+.|++++|. +... ....+..+++|+.
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~~l~~L~~ 178 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI------QRKDFAGLTFLEE 178 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE------CTTTTTTCCEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc------CHHHccCCCCCCE
Confidence 9999999986555558899999999999999988766 48899999999999984 4431 1345678899999
Q ss_pred EEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCccc---ccccCcceEEcc
Q 043372 191 LEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESI---GYLQKLQGLWLN 267 (342)
Q Consensus 191 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~ 267 (342)
+++++|.+....+..+..+ ++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+ ...+.++.++++
T Consensus 179 L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEETTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EECCCCCcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 9999998887667777776 789999999998864333344568999999999999886443332 235678888888
Q ss_pred CCeeee----eccccccCCCCccEEecCCcccccccCcc-ccCCCCCcEEEcCCCcCccccc
Q 043372 268 GNKFLG----EIPSSIGNLASLTILDFSANLLEGSIPSS-LGKCQNLISLNLSNNNLSGTIP 324 (342)
Q Consensus 268 ~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~ 324 (342)
++.+.+ .+|..+..+++|++|++++|++. .+|.. +.++++|+.|++++|++.+..|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 887764 46777889999999999999998 55555 6899999999999999997665
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.2e-27 Score=197.07 Aligned_cols=251 Identities=25% Similarity=0.294 Sum_probs=209.5
Q ss_pred cEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCC--CCccccCCCCccEEEc
Q 043372 63 RIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGP--IPASISNTSNLMTLAI 140 (342)
Q Consensus 63 ~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l 140 (342)
+.++.+++.++ ..|..+ .++|++|++++|.++ .+|...+..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777777 555544 368999999999998 78877666899999999999988632 2455667899999999
Q ss_pred cCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecC
Q 043372 141 GGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGN 220 (342)
Q Consensus 141 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 220 (342)
++|.+......+..+++|+.|++++|.+..... ...+..+++|++|+++++.+....+..+..+ ++|++|++++
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~ 159 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAG 159 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTT-----TTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTT
T ss_pred CCCccccChhhcCCCCCCCEEECCCCccccccc-----chhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCC
Confidence 999988776668899999999999998765321 2356788999999999998876666666666 7899999999
Q ss_pred ccccc-ccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccccccc
Q 043372 221 NQLFG-NIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSI 299 (342)
Q Consensus 221 ~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 299 (342)
|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 99875 46788889999999999999998877888899999999999999998666667888999999999999999888
Q ss_pred CccccCCC-CCcEEEcCCCcCcccc
Q 043372 300 PSSLGKCQ-NLISLNLSNNNLSGTI 323 (342)
Q Consensus 300 ~~~~~~~~-~L~~l~l~~~~~~~~~ 323 (342)
+..+..++ +|+.|++++|++.+..
T Consensus 240 ~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 240 KQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp SSSCCCCCTTCCEEECTTCCEECSG
T ss_pred HHHHHhhhccCCEEEccCCCeeccc
Confidence 88888885 9999999999998643
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.2e-27 Score=198.90 Aligned_cols=233 Identities=21% Similarity=0.281 Sum_probs=140.6
Q ss_pred CCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEE
Q 043372 82 NLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREV 161 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 161 (342)
..+.++.|+++++.++ .+|..++ .+++|++|++++|.+. .+|..+..+++|++|++++|.+...+..+..+++|+.|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 3578889999998888 8888777 4889999999988887 77777888889999999888888666568888888888
Q ss_pred EcccCCCCCCCCCch---hhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCC
Q 043372 162 SISQNPLGNGEKDDL---EFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLE 238 (342)
Q Consensus 162 ~l~~~~~~~~~~~~~---~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 238 (342)
++++|.......... .....+..+++|++|++++|.+. .++..+..+ ++|++|++++|.+. .++..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-TTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC-CCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 888865543211100 00111223555555555555444 334444443 45555555555554 2333444555555
Q ss_pred EEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCc
Q 043372 239 LLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNN 318 (342)
Q Consensus 239 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~ 318 (342)
+|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.+++..+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 55555555554555555555555555555555554555555555555555555555555555555555555555555444
Q ss_pred Cc
Q 043372 319 LS 320 (342)
Q Consensus 319 ~~ 320 (342)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 33
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.8e-27 Score=197.24 Aligned_cols=280 Identities=18% Similarity=0.209 Sum_probs=223.8
Q ss_pred ceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCC---CccccCCCCCCcEEE
Q 043372 39 EVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSF---PSDLGFTLPNLELLN 115 (342)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~---~~~~~~~~~~L~~L~ 115 (342)
+.++++++.++.. |..+. ++|++|++++|.+....+..+..+++|++|++++|.+. .. +..+. .+++|++|+
T Consensus 10 ~~l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~-~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDF-GTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHH-SCSCCCEEE
T ss_pred CEEEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccc-cccccCEEE
Confidence 4677887777744 33333 68999999999999555556899999999999999886 33 34444 589999999
Q ss_pred ccCCccCCCCCccccCCCCccEEEccCCcCcCCCC--CccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEe
Q 043372 116 VADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVP--SFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEI 193 (342)
Q Consensus 116 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l 193 (342)
+++|.+. .++..+..+++|++|++++|.+..... .+..+++|+.|++++|.+... ....+..+++|++|++
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA------FNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC------STTTTTTCTTCCEEEC
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc------chhhcccCcCCCEEEC
Confidence 9999887 466678899999999999999887765 589999999999999987652 2345678899999999
Q ss_pred ccCCCCC-CCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeee
Q 043372 194 SDTNCGG-MLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFL 272 (342)
Q Consensus 194 ~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 272 (342)
+++.+.. ..+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 158 ~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 158 AGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp TTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 9998765 355566665 79999999999998777888899999999999999998776767888999999999999999
Q ss_pred eeccccccCCC-CccEEecCCcccccccC--ccccCCCCCcEEEcCCCcCccccchhhcCcc
Q 043372 273 GEIPSSIGNLA-SLTILDFSANLLEGSIP--SSLGKCQNLISLNLSNNNLSGTIPTEVIGLS 331 (342)
Q Consensus 273 ~~~~~~~~~~~-~L~~L~l~~n~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~ 331 (342)
+..+..+..++ +|++|++++|++...-. ....-+...+.+.+..+.+.+..|..+.+.+
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 88888888885 99999999999874311 1112234555667777788877787766543
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.5e-26 Score=204.26 Aligned_cols=295 Identities=25% Similarity=0.300 Sum_probs=157.0
Q ss_pred CcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCc-------------cEEEecccc
Q 043372 5 PGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRM-------------RIIAFGINK 71 (342)
Q Consensus 5 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~ 71 (342)
|+.++ .++||+|+++++.+ +..+..++++++|++|++++|.+.+..|..+.++.+| ++|++++|.
T Consensus 5 p~~~~-~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNVS-NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccccc-cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 44443 58999999999999 5788889999999999999999988888888877764 888888888
Q ss_pred cccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCC-------------------CCCccccCC
Q 043372 72 LSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAG-------------------PIPASISNT 132 (342)
Q Consensus 72 i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~~~ 132 (342)
+.+ .|. ..++|++|++++|.++ .+|.. +++|++|++++|.+.+ .+| .+..+
T Consensus 83 l~~-lp~---~~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l 152 (454)
T 1jl5_A 83 LSS-LPE---LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNS 152 (454)
T ss_dssp CSC-CCS---CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTC
T ss_pred ccc-CCC---CcCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCC
Confidence 773 333 1356777777777666 35431 2445555555444432 133 24444
Q ss_pred CCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCC
Q 043372 133 SNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTR 212 (342)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 212 (342)
++|++|++++|.+...+.. .++|+.|++++|.+... ..+..+++|+.+++++|.+.. ++. .+++
T Consensus 153 ~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l--------~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~ 216 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL--------PELQNLPFLTAIYADNNSLKK-LPD----LPLS 216 (454)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC--------CCCTTCTTCCEEECCSSCCSS-CCC----CCTT
T ss_pred CCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcC--------ccccCCCCCCEEECCCCcCCc-CCC----CcCc
Confidence 5555555555544432211 13455555555544331 135566777777777766543 221 2246
Q ss_pred ccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCC
Q 043372 213 LRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSA 292 (342)
Q Consensus 213 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (342)
|++|++++|.+. .++ .+..+++|++|++++|.+.+ .|.. +++|+.|++++|.+.+ +|.. .++|++|++++
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 777777777776 444 36677888888888887764 3332 3677788887777663 4432 25666777776
Q ss_pred ccccc--ccCcc-------------ccCC-CCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 293 NLLEG--SIPSS-------------LGKC-QNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 293 n~~~~--~~~~~-------------~~~~-~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
|.+.+ .++.. +..+ ++|+.|++++|.+++ +|.. ++++ ++|++++|
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L-~~L~L~~N 347 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRL-ERLIASFN 347 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTC-CEEECCSS
T ss_pred CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcC-CEEECCCC
Confidence 66654 11111 1112 366666666666664 4443 3556 66777665
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.2e-26 Score=196.63 Aligned_cols=222 Identities=23% Similarity=0.316 Sum_probs=120.0
Q ss_pred cCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEE
Q 043372 60 KRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLA 139 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 139 (342)
.+++.|+++++.+. .+|..+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45555666655555 44555555556666666665555 5554443 3555666666555555 4455555555666666
Q ss_pred ccCCcCcCCCCC-cc---------ccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhcc
Q 043372 140 IGGNGFSGKVPS-FE---------NLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNL 209 (342)
Q Consensus 140 l~~~~~~~~~~~-~~---------~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~ 209 (342)
+++|......+. +. ++++|+.|++++|.+.. ++..+..+++|++|++++|.+.. ++..+..+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l 228 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-------chHhhcCCCCCCEEEccCCCCCc-CchhhccC
Confidence 655444332222 22 25556666665555442 12234455556666665555543 33334433
Q ss_pred CCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEe
Q 043372 210 STRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILD 289 (342)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 289 (342)
++|++|++++|++.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.++++|+.++
T Consensus 229 -~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 229 -PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp -TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred -CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 4556666665555555555555555666666665555555555555555666666666555555555555555555555
Q ss_pred cCCcc
Q 043372 290 FSANL 294 (342)
Q Consensus 290 l~~n~ 294 (342)
+..+.
T Consensus 308 l~~~~ 312 (328)
T 4fcg_A 308 VPPHL 312 (328)
T ss_dssp CCGGG
T ss_pred CCHHH
Confidence 55443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.4e-26 Score=202.12 Aligned_cols=246 Identities=22% Similarity=0.227 Sum_probs=174.0
Q ss_pred ccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcC
Q 043372 14 LRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPV 93 (342)
Q Consensus 14 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~ 93 (342)
.+.++.++..++. .+..+ .+++++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3566666666653 33333 25777788888777777777777778888888887777766667777778888888887
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCc-CcCCCCC-ccccCcccEEEcccCCCCCC
Q 043372 94 NQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNG-FSGKVPS-FENLHKLREVSISQNPLGNG 171 (342)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~l~l~~~~~~~~ 171 (342)
|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|. +...... +.++++|+.|++++|.+...
T Consensus 133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7777 5655555567778888887777775555567777788888877743 3333332 67777888888887776643
Q ss_pred CCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccC
Q 043372 172 EKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRI 251 (342)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 251 (342)
. .+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+..
T Consensus 212 ~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 212 P--------NLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp C--------CCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred c--------cccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 2 35567778888888877776666666666 67888888888877666677777888888888888877666
Q ss_pred CcccccccCcceEEccCCeee
Q 043372 252 PESIGYLQKLQGLWLNGNKFL 272 (342)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~ 272 (342)
+..+..+++|+.|++++|.+.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 666777788888888887664
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.8e-26 Score=200.15 Aligned_cols=227 Identities=18% Similarity=0.123 Sum_probs=113.4
Q ss_pred cCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEE
Q 043372 60 KRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLA 139 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 139 (342)
+++++|++++|.+....+..|..+++|+.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35555555555555444555555555555555555554 33322222455555555555555544444455555555555
Q ss_pred ccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEe
Q 043372 140 IGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSV 218 (342)
Q Consensus 140 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 218 (342)
+++|.+....+. +..+++|+.|+++++..... -....+..+++|++|++++|.+... + .+..+ ++|++|++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l-~~L~~L~L 225 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-----ISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL-VGLEELEM 225 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----ECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTC-TTCCEEEC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-----cChhhccCCCCCCEEECCCCccccc-c-ccccc-ccccEEEC
Confidence 555555544332 55555555555554322110 0011244455555555555554422 1 22222 45555555
Q ss_pred cCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccc
Q 043372 219 GNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLL 295 (342)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 295 (342)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 55555544445555555555555555555544455555555555555555555533334445555555555555543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=199.07 Aligned_cols=245 Identities=19% Similarity=0.232 Sum_probs=151.5
Q ss_pred ccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcC
Q 043372 14 LRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPV 93 (342)
Q Consensus 14 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~ 93 (342)
.+.++.++..++ ..|..+. ++++.|++++|.++...+..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555554 2333232 5667777777777666666677777777777777777655556667777777777777
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcC-cCCCC-CccccCcccEEEcccCCCCCC
Q 043372 94 NQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGF-SGKVP-SFENLHKLREVSISQNPLGNG 171 (342)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~~~~L~~l~l~~~~~~~~ 171 (342)
|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|.. ....+ .+.++++|+.|++++|.+...
T Consensus 122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 7766 55554444567777777777766655555666677777777766433 22222 266667777777777666542
Q ss_pred CCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccC
Q 043372 172 EKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRI 251 (342)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 251 (342)
. .+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+..
T Consensus 201 ~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 201 P--------NLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp C--------CCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred c--------ccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 2 24555666666666666555444555544 56666666666666555556666666666666666666555
Q ss_pred CcccccccCcceEEccCCee
Q 043372 252 PESIGYLQKLQGLWLNGNKF 271 (342)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~ 271 (342)
+..+..+++|+.|++++|.+
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCE
T ss_pred hhHhccccCCCEEEcCCCCc
Confidence 55566666666666666655
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.1e-26 Score=200.09 Aligned_cols=235 Identities=22% Similarity=0.212 Sum_probs=203.4
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.++...+..|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..+..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 5676665 78999999999999888889999999999999999999888889999999999999999999666678999
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCcc-CCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEE
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQF-AGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREV 161 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 161 (342)
+++|++|++++|.+. .++...+..+++|++|+++++.. ....+..+..+++|++|++++|.+... +.+..+++|+.|
T Consensus 135 l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEE
T ss_pred cccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cccCCCcccCEE
Confidence 999999999999998 77776666899999999998544 333445688999999999999998855 458899999999
Q ss_pred EcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEE
Q 043372 162 SISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLD 241 (342)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 241 (342)
++++|.+... ....+..+++|+.|+++++.+....+..+..+ ++|++|++++|++....+..+..+++|+.|+
T Consensus 213 ~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 213 DLSGNHLSAI------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp ECTTSCCCEE------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred ECCCCccCcc------ChhhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 9999988763 24467889999999999999887666667666 7899999999999877777888899999999
Q ss_pred cCCCccc
Q 043372 242 LGDNQFI 248 (342)
Q Consensus 242 l~~~~~~ 248 (342)
+++|++.
T Consensus 286 L~~Np~~ 292 (440)
T 3zyj_A 286 LHHNPWN 292 (440)
T ss_dssp CCSSCEE
T ss_pred cCCCCcc
Confidence 9999874
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4e-25 Score=201.10 Aligned_cols=268 Identities=23% Similarity=0.282 Sum_probs=216.2
Q ss_pred CcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeC
Q 043372 12 PKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDF 91 (342)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l 91 (342)
.++++|+++++.++ ..+..+. ++|++|++++|.++.+.. .+++|++|++++|.+. .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 36899999999998 4454443 899999999999885433 5789999999999988 4554 7899999999
Q ss_pred cCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCC
Q 043372 92 PVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNG 171 (342)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 171 (342)
++|.++ .+|. .+++|++|++++|.+.. +|.. +++|++|++++|.+..... .+++|+.|++++|.+...
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCC
Confidence 999998 6665 47899999999998874 4443 4899999999998886543 457899999999988763
Q ss_pred CCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccC
Q 043372 172 EKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRI 251 (342)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 251 (342)
. ..+++|+.|++++|.+.. ++. .+++|+.|++++|.+. .++. .+++|+.|++++|.+.+ +
T Consensus 177 ~----------~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 177 P----------MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp C----------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-C
T ss_pred c----------ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-C
Confidence 2 346899999999998764 222 2378999999999887 3333 34889999999999885 4
Q ss_pred CcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCc
Q 043372 252 PESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL 330 (342)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l 330 (342)
| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.+. .+|..+.++++|+.|++++|++++..|..+..+
T Consensus 237 p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 4 45689999999999987 5665 5688999999999998 788899999999999999999998877766543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.8e-26 Score=190.25 Aligned_cols=223 Identities=19% Similarity=0.191 Sum_probs=152.8
Q ss_pred cEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCC
Q 043372 15 RILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVN 94 (342)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~ 94 (342)
++++.+++.++.. +..+ .++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5677777777633 3322 468888888888888777777888888888888888888776778888888888888888
Q ss_pred C-CCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCC
Q 043372 95 Q-LQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGE 172 (342)
Q Consensus 95 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~ 172 (342)
. +. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+....
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 6 65 55443444688888888888888766667777788888888888877765544 667777777777776554311
Q ss_pred CCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCC
Q 043372 173 KDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIP 252 (342)
Q Consensus 173 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (342)
. ..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 170 ~------~~~~~l-------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 170 E------RAFRGL-------------------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp T------TTTTTC-------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred H------HHhcCc-------------------------cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 1 112233 456666666665554445556666666666666666665444
Q ss_pred cccccccCcceEEccCCeee
Q 043372 253 ESIGYLQKLQGLWLNGNKFL 272 (342)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~~ 272 (342)
..+..+++|+.|++++|.+.
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEE
T ss_pred HHcccCcccCEEeccCCCcc
Confidence 44566666666666666665
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.3e-26 Score=189.88 Aligned_cols=267 Identities=21% Similarity=0.219 Sum_probs=182.7
Q ss_pred ceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccC
Q 043372 39 EVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVAD 118 (342)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 118 (342)
++++.+++.++.+ |..+ .++|++|++++|.+....+..+..+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCS
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCC
Confidence 5677777666643 3322 36788888888888866666778888888888888877733344333 577888888887
Q ss_pred Cc-cCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccC
Q 043372 119 NQ-FAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDT 196 (342)
Q Consensus 119 ~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~ 196 (342)
|. +....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------- 143 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------------------------- 143 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc--------------------------
Confidence 76 5544466677777777777777776655433 5556666666666655443
Q ss_pred CCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeecc
Q 043372 197 NCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIP 276 (342)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (342)
..+..+..+ ++|++|++++|++....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 144 ----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 144 ----LPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp ----CCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred ----cCHhHhccC-CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 222223333 578888888888775555567888999999999999887778888889999999999998886656
Q ss_pred ccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcC--ccccceeeccCCC
Q 043372 277 SSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIG--LSSLSIYLDLSQN 342 (342)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~--l~~l~~~l~l~~n 342 (342)
..+..+++|++|++++|++...-+ ..+....++.+....+.+.+..|..+.+ +..+ ...++.+|
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l-~~~~l~~C 284 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL-AANDLQGC 284 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGS-CGGGSCCC
T ss_pred HHcccCcccCEEeccCCCccCCCC-cHHHHHHHHhcccccCccccCCchHhCCcChhhc-CHHHhccC
Confidence 678888999999999998763211 1111123455556677777777776654 4555 55666655
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.9e-27 Score=197.91 Aligned_cols=261 Identities=15% Similarity=0.129 Sum_probs=179.9
Q ss_pred CCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEc
Q 043372 37 SLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNV 116 (342)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 116 (342)
.++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+. +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEEC
Confidence 34556677777665555566778899999999999997767789999999999999999873 333 346899999999
Q ss_pred cCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccC
Q 043372 117 ADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDT 196 (342)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~ 196 (342)
++|.+.+. ...++|++|++++|.+...... .+++|+.|++++|.+... ....+..+++|++|++++|
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~------~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITML------RDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSG------GGBCTGGGSSEEEEECTTS
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCc------cchhhhccCCCCEEECCCC
Confidence 99987632 2348999999999888765433 367788888888877652 2234556677777777777
Q ss_pred CCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeecc
Q 043372 197 NCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIP 276 (342)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (342)
.+....+..+....++|++|++++|.+.... ....+++|++|++++|.+.+. +..+..+++|+.|++++|.+. .+|
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~ 230 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIE 230 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EEC
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chh
Confidence 6665444444322256777777777765331 122366777777777776633 334666677777777777666 455
Q ss_pred ccccCCCCccEEecCCcccc-cccCccccCCCCCcEEEcCCC
Q 043372 277 SSIGNLASLTILDFSANLLE-GSIPSSLGKCQNLISLNLSNN 317 (342)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~~ 317 (342)
..+..+++|+.|++++|++. +.++..+..++.|+.+++.++
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 56666677777777777666 455666666667777666644
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-27 Score=199.50 Aligned_cols=264 Identities=16% Similarity=0.215 Sum_probs=213.9
Q ss_pred cccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCc
Q 043372 13 KLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFP 92 (342)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~ 92 (342)
.++..+++.+.+.......+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45566666666654455566778899999999999998888899999999999999999985544 8899999999999
Q ss_pred CCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCC-CccccCcccEEEcccCCCCCC
Q 043372 93 VNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVP-SFENLHKLREVSISQNPLGNG 171 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~ 171 (342)
+|.++ .++ ..++|++|++++|.+.+..+. .+++|++|++++|.+....+ .+..+++|+.|++++|.+...
T Consensus 89 ~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99887 444 258999999999998754333 46889999999999988765 488899999999999988753
Q ss_pred CCCchhhhhhh-ccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCccccc
Q 043372 172 EKDDLEFVNSL-VNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGR 250 (342)
Q Consensus 172 ~~~~~~~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 250 (342)
. ...+ ..+++|++|++++|.+... +. ... .++|++|++++|.+. ..+..+..+++|++|++++|.+. .
T Consensus 160 ~------~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~-l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~ 228 (317)
T 3o53_A 160 N------FAELAASSDTLEHLNLQYNFIYDV-KG-QVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228 (317)
T ss_dssp E------GGGGGGGTTTCCEEECTTSCCCEE-EC-CCC-CTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-E
T ss_pred c------HHHHhhccCcCCEEECCCCcCccc-cc-ccc-cccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-c
Confidence 2 2233 4679999999999987654 21 222 378999999999997 45555888999999999999998 5
Q ss_pred CCcccccccCcceEEccCCeee-eeccccccCCCCccEEecCCc-ccccc
Q 043372 251 IPESIGYLQKLQGLWLNGNKFL-GEIPSSIGNLASLTILDFSAN-LLEGS 298 (342)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n-~~~~~ 298 (342)
.|..+..+++|+.|++++|.+. +..+..+..++.|+.+++.++ .+.+.
T Consensus 229 l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 6777888999999999999998 667788889999999999865 44443
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.4e-23 Score=191.03 Aligned_cols=255 Identities=29% Similarity=0.350 Sum_probs=209.9
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEE
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLN 115 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 115 (342)
.++++|+++++.++. .|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 468999999999984 444444 89999999999998 4554 6799999999999998 6776 489999999
Q ss_pred ccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEecc
Q 043372 116 VADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISD 195 (342)
Q Consensus 116 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 195 (342)
+++|.+.+ +|. .+++|+.|++++|.+...+.. +++|+.|++++|.+..... .+++|+.|++++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~ 170 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----------LPSELCKLWAYN 170 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----------CCTTCCEEECCS
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----------ccCCCCEEECCC
Confidence 99999874 444 578999999999998876553 4899999999998875321 347899999999
Q ss_pred CCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeec
Q 043372 196 TNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEI 275 (342)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (342)
|.+.. ++ ..+++|+.|++++|.+.+ ++. ..++|+.|++++|.+. .++. .+++|+.|++++|.+. .+
T Consensus 171 N~l~~-l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~l 236 (622)
T 3g06_A 171 NQLTS-LP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SL 236 (622)
T ss_dssp SCCSC-CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CC
T ss_pred CCCCC-Cc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cC
Confidence 98765 33 334789999999999874 333 3489999999999988 3443 2488999999999987 45
Q ss_pred cccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCCC
Q 043372 276 PSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 276 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++ .+|..+..+++| ++|+|++|
T Consensus 237 p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N 294 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGN 294 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSC
T ss_pred C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCC
Confidence 5 45689999999999998 5665 5789999999999999 789999999999 99999998
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.3e-26 Score=191.21 Aligned_cols=252 Identities=22% Similarity=0.263 Sum_probs=166.7
Q ss_pred cccCCCCCceeeccccccccCCchhhcCccCccEEEeccccccc-ccCcccc-------CCCCCCEEeCcCCCCCCCCCc
Q 043372 31 SFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSG-EIPFSIY-------NLSSLSVFDFPVNQLQGSFPS 102 (342)
Q Consensus 31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~-------~l~~L~~l~l~~~~~~~~~~~ 102 (342)
.++..++|+++++++|.+ ..|..+... |+.|++++|.+.. ..+..+. .+++|++|++++|.+++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345567788888888888 455555543 8888888888743 3444443 688888888888888877777
Q ss_pred ccc-CCCCCCcEEEccCCccCCCCCccccCC-----CCccEEEccCCcCcCCCC-CccccCcccEEEcccCCCCCCCCCc
Q 043372 103 DLG-FTLPNLELLNVADNQFAGPIPASISNT-----SNLMTLAIGGNGFSGKVP-SFENLHKLREVSISQNPLGNGEKDD 175 (342)
Q Consensus 103 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~ 175 (342)
.++ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+....+ .+..+++|+.|++++|.+.+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---- 188 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE---- 188 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH----
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc----
Confidence 653 4688888888888888755 6655554 788888888888877664 477888888888888765420
Q ss_pred hhhhhhh--ccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCccccc---ccCccccCcCCCCEEEcCCCccccc
Q 043372 176 LEFVNSL--VNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFG---NIPSGLRNLVNLELLDLGDNQFIGR 250 (342)
Q Consensus 176 ~~~~~~l--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~ 250 (342)
......+ ..++ +|++|++++|.+.. .....+..+++|++|++++|.+.+.
T Consensus 189 ~~~~~~~~~~~l~-------------------------~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 189 RGLISALCPLKFP-------------------------TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp HHHHHHSCTTSCT-------------------------TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred hHHHHHHHhccCC-------------------------CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 0112122 3334 45555555555431 1112233456777777777766654
Q ss_pred CC-cccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCcc
Q 043372 251 IP-ESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 251 ~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
.+ ..+..+++|+.|++++|.+. .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 42 34445677777777777776 5565554 6777888888877743 54 7777888888888887764
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.2e-27 Score=219.54 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=62.6
Q ss_pred CCCcccEEEeeccccccC----ccccccCCCCCceeeccccccccC----CchhhcCccCccEEEecccccccccCcccc
Q 043372 10 SIPKLRILTVHANYLSGE----IPSSFGNLSSLEVLSATANQFVGR----IPETLRDIKRMRIIAFGINKLSGEIPFSIY 81 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 81 (342)
++++|++|++++|.+++. ....+..+++|++|+++++.+.+. .+..+.++++|++|++++|.+.+ .+..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 344455555544444322 111223344455555554444311 12222344555555555554442 333444
Q ss_pred CCCCCCEEeCcCCCCC---CCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCC--CccccC
Q 043372 82 NLSSLSVFDFPVNQLQ---GSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVP--SFENLH 156 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~ 156 (342)
.+++|+.++++..... ...+..+. .+++|+.+.+++.... ..+..+..+++|++|++++|.+.+... .+..++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLV-FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCC-CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhh-ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 4444444444322111 01111111 2344445444433211 334444455566666666555332111 134455
Q ss_pred cccEEEcc
Q 043372 157 KLREVSIS 164 (342)
Q Consensus 157 ~L~~l~l~ 164 (342)
+|+.|++.
T Consensus 319 ~L~~L~L~ 326 (592)
T 3ogk_B 319 NLEVLETR 326 (592)
T ss_dssp TCCEEEEE
T ss_pred CCCEEecc
Confidence 55555554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=7.1e-26 Score=190.87 Aligned_cols=250 Identities=17% Similarity=0.193 Sum_probs=180.9
Q ss_pred cCCCCcccEEEeeccccccCccccccCCCCCceeecccccccc-CCchhhc-------CccCccEEEecccccccccCcc
Q 043372 8 LGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVG-RIPETLR-------DIKRMRIIAFGINKLSGEIPFS 79 (342)
Q Consensus 8 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~i~~~~~~~ 79 (342)
+++.++|+++++++|.+ ..+..+.. .|+.|++++|.+.. ..+..+. ++++|++|++++|.+.+..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45667889999988888 34444443 39999999999853 3455454 7899999999999999888887
Q ss_pred c--cCCCCCCEEeCcCCCCCCCCCccccCCC-----CCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCC---C
Q 043372 80 I--YNLSSLSVFDFPVNQLQGSFPSDLGFTL-----PNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGK---V 149 (342)
Q Consensus 80 ~--~~l~~L~~l~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~ 149 (342)
+ ..+++|++|++++|.+++. |..+. .+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 6 8999999999999999844 65443 34 8999999999999977778899999999999999987543 2
Q ss_pred CC--ccccCcccEEEcccCCCCCCCCCchhhh-hhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccc
Q 043372 150 PS--FENLHKLREVSISQNPLGNGEKDDLEFV-NSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGN 226 (342)
Q Consensus 150 ~~--~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 226 (342)
+. +..+++|+.|++++|.+.... ... ..+..++ +|++|++++|.+.+.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~~~l~-------------------------~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPS----GVCSALAAARV-------------------------QLQGLDLSHNSLRDA 243 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHH----HHHHHHHHTTC-------------------------CCSEEECTTSCCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchH----HHHHHHHhcCC-------------------------CCCEEECCCCcCCcc
Confidence 22 388999999999999876311 111 1122333 455555555555433
Q ss_pred cC-ccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccccc
Q 043372 227 IP-SGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEG 297 (342)
Q Consensus 227 ~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 297 (342)
.+ ..+..+++|++|++++|.+. .+|..+. ++|++|++++|++.+. |. +..+++|++|++++|++++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 32 23344567777777777776 4555444 6777888888777643 54 7777788888888887763
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=194.11 Aligned_cols=238 Identities=16% Similarity=0.144 Sum_probs=141.2
Q ss_pred CccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccE
Q 043372 58 DIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMT 137 (342)
Q Consensus 58 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 137 (342)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 34589999999999887777788889999999999988874333 336888888888888776322 2378888
Q ss_pred EEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEE
Q 043372 138 LAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLS 217 (342)
Q Consensus 138 L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 217 (342)
|++++|.+....+. .+++|+.|++++|.+.. .....+..+++|+.|++++|.+....+..+....++|++|+
T Consensus 104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp EECCSSCCCCEEEC--CCSSCEEEECCSSCCCS------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EECcCCcCCCCCcc--ccCCCCEEECCCCCCCC------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 88888877665432 35677777777776654 22233445556666666665555444444432224555555
Q ss_pred ecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccc-
Q 043372 218 VGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLE- 296 (342)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~- 296 (342)
+++|.+.+..+ ...+++|+.|++++|.+.+. +..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCH
T ss_pred cCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcC
Confidence 55555543311 22345555555555555532 223445555555555555554 34444555555555555555544
Q ss_pred cccCccccCCCCCcEEEcC
Q 043372 297 GSIPSSLGKCQNLISLNLS 315 (342)
Q Consensus 297 ~~~~~~~~~~~~L~~l~l~ 315 (342)
+.++..+..++.|+.+++.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 3344444445555544443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.5e-25 Score=195.69 Aligned_cols=237 Identities=15% Similarity=0.200 Sum_probs=192.7
Q ss_pred CCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcE
Q 043372 34 NLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLEL 113 (342)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 113 (342)
.+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+ +..+++|++|++++|.++ .++. .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCE
Confidence 34589999999999998888899999999999999999986554 889999999999999887 4442 489999
Q ss_pred EEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhc-cCCcccEE
Q 043372 114 LNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLV-NTSRLELL 191 (342)
Q Consensus 114 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~l 191 (342)
|++++|.+.+..+. .+++|+.|++++|.+....+. +..+++|+.|++++|.+... .+..+. .+++|+.|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV------NFAELAASSDTLEHL 174 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCEE
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc------ChHHHhhhCCcccEE
Confidence 99999988754433 468899999999999887554 88899999999999988752 233443 67999999
Q ss_pred EeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCee
Q 043372 192 EISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKF 271 (342)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (342)
++++|.+... + .... .++|+.|++++|.+.+ .+..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+
T Consensus 175 ~Ls~N~l~~~-~-~~~~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 175 NLQYNFIYDV-K-GQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECTTSCCCEE-E-CCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ecCCCccccc-c-cccc-CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 9999987654 2 2222 3789999999999974 45558889999999999999984 677788889999999999998
Q ss_pred e-eeccccccCCCCccEEecCC
Q 043372 272 L-GEIPSSIGNLASLTILDFSA 292 (342)
Q Consensus 272 ~-~~~~~~~~~~~~L~~L~l~~ 292 (342)
. +..|..+..++.|+.+++..
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEeccc
Confidence 7 56677788888888888763
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=7.1e-26 Score=207.83 Aligned_cols=324 Identities=15% Similarity=0.144 Sum_probs=180.2
Q ss_pred CCCcccEEEeeccccccCccccccC-CCC-Cceeeccccc-cccC-CchhhcCccCccEEEecccccccc----cCcccc
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGN-LSS-LEVLSATANQ-FVGR-IPETLRDIKRMRIIAFGINKLSGE----IPFSIY 81 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~ 81 (342)
++++|++|+++++.+++.....+.. ++. |++|++++|. +... .+....++++|++|++++|.+.+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 7889999999988776554454544 344 8888888776 2211 122234678888888888876543 222344
Q ss_pred CCCCCCEEeCcCCCCCC----CCCccccCCCCCCcEEEccCCccCCCCCcccc---------------------------
Q 043372 82 NLSSLSVFDFPVNQLQG----SFPSDLGFTLPNLELLNVADNQFAGPIPASIS--------------------------- 130 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------------------- 130 (342)
.+++|+.|+++++.+.+ .++. +...+++|++|+++++.+.+ .+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 67777777777776641 1111 11246777777777765542 233333
Q ss_pred CCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccC
Q 043372 131 NTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLS 210 (342)
Q Consensus 131 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 210 (342)
.+++|+.+.++++........+..+++|+.|++++|.+... .....+..+++|+.|+++.+ +.+.....+...+
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~-----~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE-----DHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYC 341 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH-----HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHH-----HHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhC
Confidence 44455555554433232333366788899999988874321 12223445555555555421 1111111111112
Q ss_pred CCccEEEec------------------------------------CcccccccCccccC-cCCCCEEEcC----CCcccc
Q 043372 211 TRLRKLSVG------------------------------------NNQLFGNIPSGLRN-LVNLELLDLG----DNQFIG 249 (342)
Q Consensus 211 ~~L~~L~l~------------------------------------~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~ 249 (342)
++|++|+++ .+++.+.....+.. +++|++|+++ .+.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 344444444 33333222222222 4556666654 223332
Q ss_pred c-----CCcccccccCcceEEccCCe--eeeeccccc-cCCCCccEEecCCcccccc-cCccccCCCCCcEEEcCCCcCc
Q 043372 250 R-----IPESIGYLQKLQGLWLNGNK--FLGEIPSSI-GNLASLTILDFSANLLEGS-IPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 250 ~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
. .+..+..+++|+.|+++.|. +.+..+..+ ..+++|++|++++|.+++. ++..+..+++|+.|++++|+++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 1 11223446677777775443 333333223 2477888888888887652 3445567888999999999876
Q ss_pred cccc-hhhcCccccceeeccCCC
Q 043372 321 GTIP-TEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 321 ~~~~-~~~~~l~~l~~~l~l~~n 342 (342)
.... .....+++| ++|+|++|
T Consensus 502 ~~~~~~~~~~l~~L-~~L~ls~n 523 (592)
T 3ogk_B 502 ERAIAAAVTKLPSL-RYLWVQGY 523 (592)
T ss_dssp HHHHHHHHHHCSSC-CEEEEESC
T ss_pred HHHHHHHHHhcCcc-CeeECcCC
Confidence 4433 334567888 88988887
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.3e-22 Score=168.11 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=122.5
Q ss_pred CCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEc
Q 043372 85 SLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSI 163 (342)
Q Consensus 85 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l 163 (342)
.|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. +.++++|+.|++
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4666666666655 33332233456666666666655544444555556666666666555544322 555555555555
Q ss_pred ccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccc-cCccccCcCCCCEEEc
Q 043372 164 SQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGN-IPSGLRNLVNLELLDL 242 (342)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 242 (342)
++|.+.. .....+..+ ++|++|++++|.+... .+..+..+++|++|++
T Consensus 108 ~~n~l~~------------------------------~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 108 VETNLAS------------------------------LENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TTSCCCC------------------------------STTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCccc------------------------------cCchhcccC-CCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 5554433 222223333 5667777776666542 3566667777777777
Q ss_pred CCCcccccCCcccccccCcc----eEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCc
Q 043372 243 GDNQFIGRIPESIGYLQKLQ----GLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNN 318 (342)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~ 318 (342)
++|.+.+..+..+..+++|+ .+++++|.+.+..+..+. ..+|++|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 77777655555565566665 677777777644444343 3467777777777775555556777777788888777
Q ss_pred Cccccc
Q 043372 319 LSGTIP 324 (342)
Q Consensus 319 ~~~~~~ 324 (342)
+.+..+
T Consensus 236 ~~c~c~ 241 (276)
T 2z62_A 236 WDCSCP 241 (276)
T ss_dssp BCCCTT
T ss_pred ccccCC
Confidence 776543
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.9e-26 Score=211.78 Aligned_cols=325 Identities=14% Similarity=0.134 Sum_probs=158.1
Q ss_pred CCCCcccEEEeeccccccCcccccc-CCCCCceeecccc-ccccC-CchhhcCccCccEEEecccccccccCccc----c
Q 043372 9 GSIPKLRILTVHANYLSGEIPSSFG-NLSSLEVLSATAN-QFVGR-IPETLRDIKRMRIIAFGINKLSGEIPFSI----Y 81 (342)
Q Consensus 9 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~----~ 81 (342)
.++++|++|+++++.+++.....+. .+++|++|++++| .+.+. .+..+.++++|++|++++|.+.+..+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3566677777776666544444443 4667777777766 33322 22223456777777777776554332222 2
Q ss_pred CCCCCCEEeCcCCCCCCCCCc----cccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCc-------------
Q 043372 82 NLSSLSVFDFPVNQLQGSFPS----DLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNG------------- 144 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 144 (342)
.+++|+.|+++++. . .+.. .+...+++|++|++++|.....++..+..+++|+++++..+.
T Consensus 182 ~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 55577777776664 1 1111 111135666777666551111122222233333333322110
Q ss_pred -------------CcC-----CCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccC----------
Q 043372 145 -------------FSG-----KVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDT---------- 196 (342)
Q Consensus 145 -------------~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~---------- 196 (342)
+.. ....+..+++|+.|++++|.+.+ ..+...+..+++|+.|+++++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~-----~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-----YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH-----HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH-----HHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 000 00001244566666666555321 011222334444444444433
Q ss_pred -----------------------CCCCCCccchhccCCCccEEEecCcccccccCccc-cCcCCCCEEEcC--C----Cc
Q 043372 197 -----------------------NCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGL-RNLVNLELLDLG--D----NQ 246 (342)
Q Consensus 197 -----------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~--~----~~ 246 (342)
.+.+.....+...+++|++|.+..+.+.+.....+ ..+++|+.|+++ + +.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 11111111111112455555554444432222222 235677777776 2 22
Q ss_pred cccc-----CCcccccccCcceEEccCCeeeeeccccccC-CCCccEEecCCcccccccCccc-cCCCCCcEEEcCCCcC
Q 043372 247 FIGR-----IPESIGYLQKLQGLWLNGNKFLGEIPSSIGN-LASLTILDFSANLLEGSIPSSL-GKCQNLISLNLSNNNL 319 (342)
Q Consensus 247 ~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~l~l~~~~~ 319 (342)
++.. .+..+..+++|+.|++++ .+.+..+..+.. +++|++|++++|.+++.....+ ..+++|+.|++++|++
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 3211 111244566777777766 444333333333 6778888888887765444333 5578888888888888
Q ss_pred ccccchhh-cCccccceeeccCCC
Q 043372 320 SGTIPTEV-IGLSSLSIYLDLSQN 342 (342)
Q Consensus 320 ~~~~~~~~-~~l~~l~~~l~l~~n 342 (342)
+...+..+ ..+++| ++|++++|
T Consensus 494 ~~~~~~~~~~~l~~L-~~L~l~~~ 516 (594)
T 2p1m_B 494 GDKALLANASKLETM-RSLWMSSC 516 (594)
T ss_dssp CHHHHHHTGGGGGGS-SEEEEESS
T ss_pred cHHHHHHHHHhCCCC-CEEeeeCC
Confidence 64434323 347777 88888776
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.1e-22 Score=166.84 Aligned_cols=208 Identities=19% Similarity=0.136 Sum_probs=128.1
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEE
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLN 115 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 115 (342)
++|++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEE
Confidence 35666666666666555555666666666666666666555555666666666666666665 33333333566666666
Q ss_pred ccCCccCCCCCccccCCCCccEEEccCCcCcCC--CCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCccc-EEE
Q 043372 116 VADNQFAGPIPASISNTSNLMTLAIGGNGFSGK--VPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLE-LLE 192 (342)
Q Consensus 116 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~l~ 192 (342)
+++|.+....+..+..+++|++|++++|.+... +..+..+++|+.|++++|.+...... ....+..++.+. .++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRVLHQMPLLNLSLD 183 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG---GGHHHHTCTTCCEEEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH---Hhhhhhhccccceeee
Confidence 666666544444566666666666666666552 33366666777777777666543211 112222333333 677
Q ss_pred eccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccc
Q 043372 193 ISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIG 249 (342)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (342)
++++.+....+..+. . .+|++|++++|.+....+..+..+++|++|++++|++..
T Consensus 184 ls~n~l~~~~~~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 184 LSLNPMNFIQPGAFK-E-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCSSCCCEECTTSSC-S-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cCCCcccccCccccC-C-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 777766543333332 2 379999999999886666667889999999999998863
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.7e-21 Score=160.60 Aligned_cols=199 Identities=20% Similarity=0.263 Sum_probs=94.3
Q ss_pred CCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcc
Q 043372 86 LSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSIS 164 (342)
Q Consensus 86 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~ 164 (342)
.+.++++++.++ .+|..+ .+++++|+++++.+....+..+..+++|++|++++|.+....+. +..+++|+.|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 445555555555 444432 24556666666655544444555566666666666655544433 4555556666665
Q ss_pred cCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCC
Q 043372 165 QNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGD 244 (342)
Q Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 244 (342)
+|.+..... ..+..+++|++|+++++.+....+..+..+ ++|++|++++|.+....+..+..+++|++|++++
T Consensus 94 ~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 94 DNKLQALPI------GVFDQLVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp SSCCCCCCT------TTTTTCSSCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcCCcCCH------hHcccccCCCEEECCCCccCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 555443211 122233334444443333332222222222 4455555555555433333344455555555555
Q ss_pred CcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccc
Q 043372 245 NQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLL 295 (342)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 295 (342)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 555443333444455555555555554433333344445555555555544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.2e-21 Score=163.02 Aligned_cols=203 Identities=20% Similarity=0.185 Sum_probs=110.8
Q ss_pred ccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCccc
Q 043372 80 IYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLR 159 (342)
Q Consensus 80 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 159 (342)
+..++++++++++++.++ .+|..+ .+.+++|++++|.+....+..+..+++|++|++++|.+...... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 445566666666666665 555443 25666777776666655555666666777777766666544332 5556666
Q ss_pred EEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCE
Q 043372 160 EVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLEL 239 (342)
Q Consensus 160 ~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 239 (342)
.|++++|.+.... ..+..+++|+.|++++|.+....+..+..+ ++|++|++++|++....+..+..+++|+.
T Consensus 81 ~L~Ls~N~l~~l~-------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 81 TLDLSHNQLQSLP-------LLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp EEECCSSCCSSCC-------CCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred EEECCCCcCCcCc-------hhhccCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCE
Confidence 6666666554221 122334444444444444443333333333 45666666666555444444555556666
Q ss_pred EEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccc
Q 043372 240 LDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLE 296 (342)
Q Consensus 240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 296 (342)
|++++|.+.+..+..+..+++|+.|++++|++. .+|..+...++|+.+++++|++.
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 666666555444444455556666666666555 44444444555666666555543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.5e-21 Score=160.94 Aligned_cols=205 Identities=22% Similarity=0.280 Sum_probs=171.8
Q ss_pred CCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCC-CccccCcccEEEcccCCCCCCCCCchhhhhhhccCCc
Q 043372 109 PNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVP-SFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSR 187 (342)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 187 (342)
...+.++++++.+. .+|..+ .+++++|++++|.+....+ .+..+++|+.|+++++.+..... ..+..+++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~------~~~~~l~~ 86 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA------GIFKELKN 86 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT------TTTSSCTT
T ss_pred CCCCEEEccCCCCC-ccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh------hhhcCCCC
Confidence 35789999998887 456544 3689999999999988766 48999999999999998875432 24567899
Q ss_pred ccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEcc
Q 043372 188 LELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLN 267 (342)
Q Consensus 188 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 267 (342)
|++|+++++.+....+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcCCHhHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 9999999998876555555555 789999999999987777778899999999999999987666678899999999999
Q ss_pred CCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCcccc
Q 043372 268 GNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTI 323 (342)
Q Consensus 268 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 323 (342)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 99998666667889999999999999998666667888999999999999987654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.7e-22 Score=164.13 Aligned_cols=227 Identities=20% Similarity=0.242 Sum_probs=130.0
Q ss_pred CccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEc
Q 043372 61 RMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAI 140 (342)
Q Consensus 61 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 140 (342)
.+..+++..+.+.+. .....+++|+.++++++.+. .++. +. .+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc-cc-cCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 333444545544322 23456788888888888776 4443 33 478888888888877642 35677788888888
Q ss_pred cCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEec
Q 043372 141 GGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVG 219 (342)
Q Consensus 141 ~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 219 (342)
++|.+....+. +..+++|+.|++++|.+.... ...+..+++ |++|+++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~-------------------------L~~L~L~ 141 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP------DGVFDKLTN-------------------------LTYLNLA 141 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC------TTTTTTCTT-------------------------CCEEECC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccC------HHHhccCCC-------------------------CCEEECC
Confidence 88877766554 567777777777777665422 112334444 5555555
Q ss_pred CcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccccccc
Q 043372 220 NNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSI 299 (342)
Q Consensus 220 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 299 (342)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 219 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 219 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--
Confidence 554443333344455555555555555554444444555555555555555554444445555555555555555432
Q ss_pred CccccCCCCCcEEEcCCCcCccccchhhcCccc
Q 043372 300 PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSS 332 (342)
Q Consensus 300 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 332 (342)
.+++++.+++..|.+.+.+|.++..++.
T Consensus 220 -----~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 -----TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -----CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -----cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 2445555555555555555555544433
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2e-21 Score=161.63 Aligned_cols=202 Identities=20% Similarity=0.166 Sum_probs=166.6
Q ss_pred CCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccC
Q 043372 107 TLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNT 185 (342)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~ 185 (342)
.++++++++++++.+. .+|..+ .+.++.|++++|.+....+. +..+++|+.|++++|.+.... ....+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~l 76 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--------VDGTL 76 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--------CCSCC
T ss_pred ccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--------CCCCC
Confidence 5889999999999887 455554 37899999999998876554 889999999999999886532 22578
Q ss_pred CcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEE
Q 043372 186 SRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLW 265 (342)
Q Consensus 186 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 265 (342)
++|++|+++++.+. .++..+..+ ++|++|++++|++....+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcCC-cCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 89999999998876 355555555 6899999999998866667788899999999999999877677778889999999
Q ss_pred ccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccc
Q 043372 266 LNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGT 322 (342)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 322 (342)
+++|++.+..+..+..+++|++|++++|++. .+|..+...++|+.+++.+|++.+.
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 9999988555566788899999999999988 6788888888999999999998753
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=3.7e-21 Score=158.77 Aligned_cols=183 Identities=20% Similarity=0.212 Sum_probs=134.8
Q ss_pred CCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCC
Q 043372 132 TSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLST 211 (342)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 211 (342)
+++|+.+++.++.+... +.+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+ +
T Consensus 40 l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~ 109 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--------SALKELTNLTYLILTGNQLQSLPNGVFDKL-T 109 (272)
T ss_dssp HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCC--------GGGTTCTTCCEEECTTSCCCCCCTTTTTTC-T
T ss_pred ccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCc--------hhhcCCCCCCEEECCCCccCccChhHhcCC-c
Confidence 34444444444443322 2244455555555555544331 134455666666666665554444444445 6
Q ss_pred CccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecC
Q 043372 212 RLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFS 291 (342)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 291 (342)
+|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 89999999999886667778899999999999999997777778899999999999999986666778899999999999
Q ss_pred CcccccccCccccCCCCCcEEEcCCCcCccccc
Q 043372 292 ANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIP 324 (342)
Q Consensus 292 ~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 324 (342)
+|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 999998777788999999999999999987654
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.6e-21 Score=155.83 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=89.4
Q ss_pred CCceeeccccccccCCchhhcCccCccEEEecccc-cccccCccccCCCCCCEEeCcC-CCCCCCCCccccCCCCCCcEE
Q 043372 37 SLEVLSATANQFVGRIPETLRDIKRMRIIAFGINK-LSGEIPFSIYNLSSLSVFDFPV-NQLQGSFPSDLGFTLPNLELL 114 (342)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~~L~~L 114 (342)
+|++|++++|.+++..+..|.++++|++|++++|. +....+..+..+++|++|++++ |.++ .++...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 44444444444444433344444444444444443 4433333444444444444444 4444 3333222234444444
Q ss_pred EccCCccCCCCCccccCCCCcc---EEEccCC-cCcCCCCC-ccccCccc-EEEcccCCCCCCCCCchhhhhhhccCCcc
Q 043372 115 NVADNQFAGPIPASISNTSNLM---TLAIGGN-GFSGKVPS-FENLHKLR-EVSISQNPLGNGEKDDLEFVNSLVNTSRL 188 (342)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~-~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~l~~~~~L 188 (342)
++++|.+.+ +|. +..+++|+ ++++++| .+....+. +.++++|+ .+++++|.+...+.. .+.. ++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~------~~~~-~~L 181 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY------AFNG-TKL 181 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT------TTTT-CEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh------hcCC-CCC
Confidence 444444432 222 34444444 5555554 44433332 44455555 555555544322111 1112 455
Q ss_pred cEEEeccCC-CCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCC
Q 043372 189 ELLEISDTN-CGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDN 245 (342)
Q Consensus 189 ~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 245 (342)
+.+++++|. +....+..+....++|++|++++|.+.. ++.. .+++|+.|+++++
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 555555552 4322222233221467777777777653 3322 5567777777664
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.3e-23 Score=178.28 Aligned_cols=228 Identities=14% Similarity=0.153 Sum_probs=115.8
Q ss_pred EEeeccccccCccccccCCCCCceeeccccccccCCc----hhhcCcc-CccEEEecccccccccCccccCC-----CCC
Q 043372 17 LTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIP----ETLRDIK-RMRIIAFGINKLSGEIPFSIYNL-----SSL 86 (342)
Q Consensus 17 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l-----~~L 86 (342)
+.++.+.+++..+..+...++|++|++++|.+++..+ .++.+++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666665555555555557777777777766555 5566666 67777777777765544444443 667
Q ss_pred CEEeCcCCCCCCCCCcccc---CCC-CCCcEEEccCCccCCCCCccc----cC-CCCccEEEccCCcCcCCCCC-----c
Q 043372 87 SVFDFPVNQLQGSFPSDLG---FTL-PNLELLNVADNQFAGPIPASI----SN-TSNLMTLAIGGNGFSGKVPS-----F 152 (342)
Q Consensus 87 ~~l~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~-----~ 152 (342)
++|++++|.+.+..+..+. ..+ ++|++|++++|.+....+..+ .. .++|++|++++|.+.+.... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 7777777766533222111 122 566666666666654333222 22 24666666666655532211 2
Q ss_pred cccC-cccEEEcccCCCCCCCCCchhhhhhhccC-CcccEEEeccCCCCCCC----ccchhccCCCccEEEecCcccccc
Q 043372 153 ENLH-KLREVSISQNPLGNGEKDDLEFVNSLVNT-SRLELLEISDTNCGGML----PEAVGNLSTRLRKLSVGNNQLFGN 226 (342)
Q Consensus 153 ~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 226 (342)
...+ +|+.|++++|.+...... .+...+..+ ++|+.|++++|.+.+.. +..+...+++|++|++++|.+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred hcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 3333 566666666555432211 222333344 25555555555544321 122222223455555555554322
Q ss_pred cC----ccccCcCCCCEEEcCCCc
Q 043372 227 IP----SGLRNLVNLELLDLGDNQ 246 (342)
Q Consensus 227 ~~----~~~~~~~~L~~L~l~~~~ 246 (342)
.. ..+..+++|++|++++|.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCC
Confidence 11 222334455555555554
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.2e-22 Score=174.78 Aligned_cols=256 Identities=17% Similarity=0.183 Sum_probs=166.9
Q ss_pred eeccccccccCCchhhcCccCccEEEecccccccccC----ccccCCC-CCCEEeCcCCCCCCCCCccccC---C-CCCC
Q 043372 41 LSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIP----FSIYNLS-SLSVFDFPVNQLQGSFPSDLGF---T-LPNL 111 (342)
Q Consensus 41 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~---~-~~~L 111 (342)
+.++.+.+++..+..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+.. . .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5678888887777766666779999999999986555 6777888 8999999999887444443331 1 2889
Q ss_pred cEEEccCCccCCCCCcc----ccCC-CCccEEEccCCcCcCCCCC-----ccc-cCcccEEEcccCCCCCCCCCchhhhh
Q 043372 112 ELLNVADNQFAGPIPAS----ISNT-SNLMTLAIGGNGFSGKVPS-----FEN-LHKLREVSISQNPLGNGEKDDLEFVN 180 (342)
Q Consensus 112 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~-----~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~ 180 (342)
++|++++|.+....+.. +..+ ++|++|++++|.+.+.... +.. .++|+.|++++|.+.+.... .+..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~~ 160 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD--ELIQ 160 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH--HHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH--HHHH
Confidence 99999999887554443 3444 7889999988887765443 333 35888888888877643221 3344
Q ss_pred hhccCC-cccEEEeccCCCCCCCccchh----ccCCCccEEEecCcccccc----cCccccC-cCCCCEEEcCCCccccc
Q 043372 181 SLVNTS-RLELLEISDTNCGGMLPEAVG----NLSTRLRKLSVGNNQLFGN----IPSGLRN-LVNLELLDLGDNQFIGR 250 (342)
Q Consensus 181 ~l~~~~-~L~~l~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~ 250 (342)
.+...+ +|++|++++|.+.+.....+. ..+++|++|++++|.+... ++..+.. .++|++|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 455554 788888877776654443322 2224677777777776542 2233333 34777777777776643
Q ss_pred CC----cccccccCcceEEccCCeeee-------eccccccCCCCccEEecCCcccccc
Q 043372 251 IP----ESIGYLQKLQGLWLNGNKFLG-------EIPSSIGNLASLTILDFSANLLEGS 298 (342)
Q Consensus 251 ~~----~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~n~~~~~ 298 (342)
.+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 22 234556677777777776321 2333455666777777777776644
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1e-22 Score=173.64 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=165.0
Q ss_pred CCceeeccccccccCCchhhcCc--cCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCC-CCccccCCCCCCcE
Q 043372 37 SLEVLSATANQFVGRIPETLRDI--KRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGS-FPSDLGFTLPNLEL 113 (342)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~ 113 (342)
.++.++++++.+. +..+..+ ++++.+++.++.+.+..+. +..+++|++|++++|.+.+. ++..+. .+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCCE
Confidence 4677777776654 3445555 6777777777777644433 45677777888777776533 333333 5777888
Q ss_pred EEccCCccCCCCCccccCCCCccEEEccCC-cCcC--CCCCccccCcccEEEcccC-CCCCCCCCchhhhhhhccCC-cc
Q 043372 114 LNVADNQFAGPIPASISNTSNLMTLAIGGN-GFSG--KVPSFENLHKLREVSISQN-PLGNGEKDDLEFVNSLVNTS-RL 188 (342)
Q Consensus 114 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~~-~L 188 (342)
|++++|.+....+..+..+++|++|++++| .+.+ ....+..+++|+.|++++| .+.+ ..+...+..++ +|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~l~~~L 197 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-----KHVQVAVAHVSETI 197 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-----HHHHHHHHHSCTTC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-----HHHHHHHHhcccCC
Confidence 888777766555566677788888888877 4543 2222667788888888877 5543 12445566777 88
Q ss_pred cEEEeccCC--CC-CCCccchhccCCCccEEEecCcc-cccccCccccCcCCCCEEEcCCCc-ccccCCcccccccCcce
Q 043372 189 ELLEISDTN--CG-GMLPEAVGNLSTRLRKLSVGNNQ-LFGNIPSGLRNLVNLELLDLGDNQ-FIGRIPESIGYLQKLQG 263 (342)
Q Consensus 189 ~~l~l~~~~--~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~ 263 (342)
++|++++|. +. ..++..+... ++|++|++++|. +.+..+..+..+++|++|++++|. +.......+..+++|+.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 888888873 33 2233333444 688888888887 554556677778888888888884 32222235677888899
Q ss_pred EEccCCeeeeeccccccCCCCccEEecCCcccccccCccccC
Q 043372 264 LWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGK 305 (342)
Q Consensus 264 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 305 (342)
|++++| +.+.....+. ..+..|++++|.+++..|..++.
T Consensus 277 L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 277 LQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred EeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 999888 4322222221 23556668888888777766654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.1e-22 Score=173.37 Aligned_cols=254 Identities=17% Similarity=0.206 Sum_probs=194.0
Q ss_pred cCccEEEecccccccccCccccCC--CCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCC-CCccccCCCCcc
Q 043372 60 KRMRIIAFGINKLSGEIPFSIYNL--SSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGP-IPASISNTSNLM 136 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~~~~~~~~~l--~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 136 (342)
..++.++++++.+. +..+..+ +.++.++++++.+.+..+. ++ .+++|++|++++|.+... .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34889999998776 3456666 8999999999998855444 44 589999999999987644 666788999999
Q ss_pred EEEccCCcCcCCCC-CccccCcccEEEcccC-CCCCCCCCchhhhhhhccCCcccEEEeccC-CCCCC-CccchhccCC-
Q 043372 137 TLAIGGNGFSGKVP-SFENLHKLREVSISQN-PLGNGEKDDLEFVNSLVNTSRLELLEISDT-NCGGM-LPEAVGNLST- 211 (342)
Q Consensus 137 ~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~~- 211 (342)
+|++++|.+.+..+ .+..+++|+.|++++| .+.+ ..+...+..+++|++|++++| .+.+. ++..+... +
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~ 195 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-----FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-SE 195 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-----HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS-CT
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-----HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc-cc
Confidence 99999998775433 3788999999999998 4542 124555788999999999999 77643 34445555 6
Q ss_pred CccEEEecCcc--cc-cccCccccCcCCCCEEEcCCCc-ccccCCcccccccCcceEEccCCe-eeeeccccccCCCCcc
Q 043372 212 RLRKLSVGNNQ--LF-GNIPSGLRNLVNLELLDLGDNQ-FIGRIPESIGYLQKLQGLWLNGNK-FLGEIPSSIGNLASLT 286 (342)
Q Consensus 212 ~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~ 286 (342)
+|++|++++|. +. ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 99999999994 43 2345566788999999999998 666667788899999999999995 3323333678899999
Q ss_pred EEecCCcccccccCccccCC-CCCcEEEcCCCcCccccchhhc
Q 043372 287 ILDFSANLLEGSIPSSLGKC-QNLISLNLSNNNLSGTIPTEVI 328 (342)
Q Consensus 287 ~L~l~~n~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~ 328 (342)
+|++++| +... .+..+ ..++.|++++|.+++..|..+.
T Consensus 276 ~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 276 TLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp EEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred EEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 9999999 4422 23333 2467777999999988776654
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=6.8e-24 Score=194.73 Aligned_cols=319 Identities=12% Similarity=0.069 Sum_probs=186.4
Q ss_pred CCCcccEEEeecc-ccccC-ccccccCCCCCceeeccccccccCCchhhc----CccCccEEEecccc--ccc-ccCccc
Q 043372 10 SIPKLRILTVHAN-YLSGE-IPSSFGNLSSLEVLSATANQFVGRIPETLR----DIKRMRIIAFGINK--LSG-EIPFSI 80 (342)
Q Consensus 10 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~--i~~-~~~~~~ 80 (342)
++++|++|++++| .++.. ......++++|++|++++|.+++..+..+. .+++|++|++++|. +.. .....+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4677777777766 33322 223333567777777777766544433332 45567777776664 211 111112
Q ss_pred cCCCCCCEEeCcCCC-CC-------------------------------------------------C----CCCccccC
Q 043372 81 YNLSSLSVFDFPVNQ-LQ-------------------------------------------------G----SFPSDLGF 106 (342)
Q Consensus 81 ~~l~~L~~l~l~~~~-~~-------------------------------------------------~----~~~~~~~~ 106 (342)
..+++|+.|++++|. +. + .++... .
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~-~ 286 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY-S 286 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH-H
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH-H
Confidence 334566666665541 00 0 001000 1
Q ss_pred CCCCCcEEEccCCccCCC-CCccccCCCCccEEEccCCcCcC-CCCC-ccccCcccEEEcccCC------CCCCCCCchh
Q 043372 107 TLPNLELLNVADNQFAGP-IPASISNTSNLMTLAIGGNGFSG-KVPS-FENLHKLREVSISQNP------LGNGEKDDLE 177 (342)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~~~~L~~l~l~~~~------~~~~~~~~~~ 177 (342)
.+++|++|++++|.+... ....+..+++|++|++.+| +.+ .... ...+++|+.|++..+. ..... ...
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~--~~~ 363 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT--EQG 363 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC--HHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC--HHH
Confidence 256777777777764321 1122456777888877776 221 1111 3357788888884421 01111 112
Q ss_pred hhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEec--C----cccccc-----cCccccCcCCCCEEEcCCCc
Q 043372 178 FVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVG--N----NQLFGN-----IPSGLRNLVNLELLDLGDNQ 246 (342)
Q Consensus 178 ~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~ 246 (342)
.......+++|+.|.+.++.+.+.....+...+++|++|+++ + +.+... ....+..+++|++|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 222234589999998877777654444554434799999999 3 333311 112256789999999987 5
Q ss_pred ccccCCccccc-ccCcceEEccCCeeeeeccccc-cCCCCccEEecCCcccccccCc-cccCCCCCcEEEcCCCcCcccc
Q 043372 247 FIGRIPESIGY-LQKLQGLWLNGNKFLGEIPSSI-GNLASLTILDFSANLLEGSIPS-SLGKCQNLISLNLSNNNLSGTI 323 (342)
Q Consensus 247 ~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~ 323 (342)
+.+.....+.. +++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++...
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 55444444444 7899999999999865544444 5689999999999998654333 4455899999999999996443
Q ss_pred chhh-cCcccc
Q 043372 324 PTEV-IGLSSL 333 (342)
Q Consensus 324 ~~~~-~~l~~l 333 (342)
...+ ..++.+
T Consensus 523 ~~~l~~~lp~l 533 (594)
T 2p1m_B 523 CKLLGQKMPKL 533 (594)
T ss_dssp HHHHHHHCTTE
T ss_pred HHHHHHhCCCC
Confidence 3444 345555
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.2e-23 Score=180.04 Aligned_cols=244 Identities=22% Similarity=0.287 Sum_probs=121.1
Q ss_pred chhhcCccCccEEEecccccccccC----ccccCCCCCCEEeCcCCCCC---CCCCccc------cCCCCCCcEEEccCC
Q 043372 53 PETLRDIKRMRIIAFGINKLSGEIP----FSIYNLSSLSVFDFPVNQLQ---GSFPSDL------GFTLPNLELLNVADN 119 (342)
Q Consensus 53 ~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~l~l~~~~~~---~~~~~~~------~~~~~~L~~L~l~~~ 119 (342)
+..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. +.+|..+ ...+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3445555666666666665554322 23445566666666554332 1222222 123556666666665
Q ss_pred ccCC----CCCccccCCCCccEEEccCCcCcCCCCC-----cccc---------CcccEEEcccCCCCCCCCCchhhhhh
Q 043372 120 QFAG----PIPASISNTSNLMTLAIGGNGFSGKVPS-----FENL---------HKLREVSISQNPLGNGEKDDLEFVNS 181 (342)
Q Consensus 120 ~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~---------~~L~~l~l~~~~~~~~~~~~~~~~~~ 181 (342)
.+.. .++..+..+++|++|++++|.+...... +..+ ++|+.|++++|.+.... ...+...
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~ 182 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS--MKEWAKT 182 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH--HHHHHHH
Confidence 5543 1333445556666666666555322111 2222 45555555555443210 0011122
Q ss_pred hccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCccccc-----ccCccccCcCCCCEEEcCCCccc----ccCC
Q 043372 182 LVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFG-----NIPSGLRNLVNLELLDLGDNQFI----GRIP 252 (342)
Q Consensus 182 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~ 252 (342)
+..++ +|++|++++|.+.. ..+..+..+++|++|++++|.+. ..++
T Consensus 183 l~~~~-------------------------~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 183 FQSHR-------------------------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp HHHCT-------------------------TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred HHhCC-------------------------CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 33333 45555555554431 11224455566666666666653 2344
Q ss_pred cccccccCcceEEccCCeeeee----ccccc--cCCCCccEEecCCccccc----ccCccc-cCCCCCcEEEcCCCcCcc
Q 043372 253 ESIGYLQKLQGLWLNGNKFLGE----IPSSI--GNLASLTILDFSANLLEG----SIPSSL-GKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~~~~----~~~~~--~~~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~l~l~~~~~~~ 321 (342)
..+..+++|+.|++++|.+.+. ++..+ ..+++|++|++++|.+.+ .++..+ .++++|+.|++++|++++
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 4555566666666666666533 33444 226666677776666664 245444 446677777777777665
Q ss_pred cc
Q 043372 322 TI 323 (342)
Q Consensus 322 ~~ 323 (342)
..
T Consensus 318 ~~ 319 (386)
T 2ca6_A 318 ED 319 (386)
T ss_dssp TS
T ss_pred ch
Confidence 44
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=4.8e-23 Score=178.95 Aligned_cols=249 Identities=19% Similarity=0.234 Sum_probs=157.1
Q ss_pred ccCccccCCCCCCEEeCcCCCCCCCCCcc---ccCCCCCCcEEEccCCccC---CCCCccccCCCCccEEEccCCcCcCC
Q 043372 75 EIPFSIYNLSSLSVFDFPVNQLQGSFPSD---LGFTLPNLELLNVADNQFA---GPIPASISNTSNLMTLAIGGNGFSGK 148 (342)
Q Consensus 75 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~ 148 (342)
.++..+..+++|+.|++++|.+....+.. ....+++|++|+++++.+. +..|..+. ..
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~----------------~l 86 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----------------LL 86 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH----------------HH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH----------------HH
Confidence 34455556666777777766655221111 1123566666666654332 11222220 00
Q ss_pred CCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhcc---C---------CCccEE
Q 043372 149 VPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNL---S---------TRLRKL 216 (342)
Q Consensus 149 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~---~---------~~L~~L 216 (342)
...+..+++|+.|++++|.+.... ...+...+..+++|++|++++|.+.......+... . ++|++|
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTA--QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTT--HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHhhCCcccEEECCCCcCCHHH--HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 001234455555555555444311 11233445555566666666555432212122111 0 578899
Q ss_pred EecCccccc-ccC---ccccCcCCCCEEEcCCCcccc-----cCCcccccccCcceEEccCCeee----eeccccccCCC
Q 043372 217 SVGNNQLFG-NIP---SGLRNLVNLELLDLGDNQFIG-----RIPESIGYLQKLQGLWLNGNKFL----GEIPSSIGNLA 283 (342)
Q Consensus 217 ~l~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~ 283 (342)
++++|.+.. ..+ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. ..++..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 999888752 222 356678999999999998873 23337788999999999999985 46777888999
Q ss_pred CccEEecCCcccccc----cCccc--cCCCCCcEEEcCCCcCcc----ccchhh-cCccccceeeccCCC
Q 043372 284 SLTILDFSANLLEGS----IPSSL--GKCQNLISLNLSNNNLSG----TIPTEV-IGLSSLSIYLDLSQN 342 (342)
Q Consensus 284 ~L~~L~l~~n~~~~~----~~~~~--~~~~~L~~l~l~~~~~~~----~~~~~~-~~l~~l~~~l~l~~n 342 (342)
+|++|++++|.+.+. ++..+ +++++|+.|++++|.+.. .+|..+ ..+++| ++|++++|
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L-~~L~l~~N 313 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL-LFLELNGN 313 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC-CEEECTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc-eEEEccCC
Confidence 999999999998854 45566 348999999999999996 478877 558999 99999987
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=4.2e-20 Score=150.60 Aligned_cols=179 Identities=18% Similarity=0.246 Sum_probs=121.6
Q ss_pred CcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeC
Q 043372 12 PKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDF 91 (342)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l 91 (342)
...++++++++.++. .+..+. +.++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 345677777776663 333332 56777777777777666667777777777777777777666666777777777777
Q ss_pred cCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCC
Q 043372 92 PVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGN 170 (342)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~ 170 (342)
++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+..
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 777776 55544444677777777777777655555566777777777777777766553 6777777777777777665
Q ss_pred CCCCchhhhhhhccCCcccEEEeccCCCCC
Q 043372 171 GEKDDLEFVNSLVNTSRLELLEISDTNCGG 200 (342)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 200 (342)
.. ...+..+++|+.+++++|.+..
T Consensus 170 ~~------~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VP------HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CC------TTTTTTCTTCCEEECCSCCBCT
T ss_pred cC------HHHHhCCCCCCEEEeeCCceeC
Confidence 32 2245566777777777776643
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.1e-20 Score=151.36 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=123.5
Q ss_pred cCccEEEecccccccccCccccCCCCCCEEeCcCCC-CCCCCCccccCCCCCCcEEEccC-CccCCCCCccccCCCCccE
Q 043372 60 KRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQ-LQGSFPSDLGFTLPNLELLNVAD-NQFAGPIPASISNTSNLMT 137 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~ 137 (342)
++|++|++++|.++...+..+..+++|+++++++|. ++ .++...+..+++|++|++++ +.+....+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 489999999999987666788899999999999986 76 66655445788999999987 7887656667788888888
Q ss_pred EEccCCcCcCCCCCccccCccc---EEEcccC-CCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCc
Q 043372 138 LAIGGNGFSGKVPSFENLHKLR---EVSISQN-PLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRL 213 (342)
Q Consensus 138 L~l~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L 213 (342)
|++++|.+...+. +..+++|+ .+++++| .+.... ...+..+++|+
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~------~~~~~~l~~L~------------------------ 158 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP------VNAFQGLCNET------------------------ 158 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC------TTTTTTTBSSE------------------------
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcC------cccccchhcce------------------------
Confidence 8888888776443 66666666 7777777 554321 11233444444
Q ss_pred cEEEecCcccccccCccccCcCCCCEEEcCCCc-ccccCCcccccc-cCcceEEccCCeeeeeccccccCCCCccEEecC
Q 043372 214 RKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQ-FIGRIPESIGYL-QKLQGLWLNGNKFLGEIPSSIGNLASLTILDFS 291 (342)
Q Consensus 214 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 291 (342)
.+|++++|++.......+.. ++|++|++++|. +.+..+..+..+ ++|+.|++++|.+. .+|.. .+++|+.|+++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIAR 234 (239)
T ss_dssp EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECT
T ss_pred eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeecc
Confidence 04444444444222222222 455555555553 443434445555 55555555555554 23222 34455555554
Q ss_pred Cc
Q 043372 292 AN 293 (342)
Q Consensus 292 ~n 293 (342)
++
T Consensus 235 ~~ 236 (239)
T 2xwt_C 235 NT 236 (239)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4e-20 Score=155.23 Aligned_cols=195 Identities=21% Similarity=0.325 Sum_probs=149.1
Q ss_pred ccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCccc
Q 043372 80 IYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLR 159 (342)
Q Consensus 80 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 159 (342)
...+++|+.|+++++.+. .++. +. .+++|++|++++|.+.... . +..+++|++|++++|.+... +.+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~-~~-~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG-VQ-YLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh-hh-ccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-hhhcCCCCCC
Confidence 456889999999999887 5653 33 5899999999999887443 3 88899999999999988765 4588889999
Q ss_pred EEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCE
Q 043372 160 EVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLEL 239 (342)
Q Consensus 160 ~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 239 (342)
.|++++|.+... ..+..+++|+.|++++|.+....+ +..+ ++|++|++++|.+.+.. . +..+++|++
T Consensus 111 ~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~-~-l~~l~~L~~ 177 (308)
T 1h6u_A 111 TLDLTSTQITDV--------TPLAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLT-P-LANLSKLTT 177 (308)
T ss_dssp EEECTTSCCCCC--------GGGTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCG-G-GTTCTTCCE
T ss_pred EEECCCCCCCCc--------hhhcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCCCh-h-hcCCCCCCE
Confidence 999999987652 236778888888888887764322 4444 67888888888876432 2 677888888
Q ss_pred EEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCccccc
Q 043372 240 LDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEG 297 (342)
Q Consensus 240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 297 (342)
|++++|.+.+..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|++.+
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 8888888874332 677888888888888887443 36778888888888888763
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6e-20 Score=154.15 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=100.4
Q ss_pred CCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcE
Q 043372 34 NLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLEL 113 (342)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 113 (342)
.+++|++|+++++.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ .+. .+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCE
Confidence 345555555555555432 1 34555555555555555543222 555555555555555554 232 222 3555555
Q ss_pred EEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEe
Q 043372 114 LNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEI 193 (342)
Q Consensus 114 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l 193 (342)
|++++|.+... + .+..+++|++|++++|.+....+ +..+++|+.|++++|.+.... .+..+++|+.|++
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l 180 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--------PLANLSKLTTLKA 180 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEEC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh--------hhcCCCCCCEEEC
Confidence 55555555432 2 24555555555555555544333 555555666666655554311 1445556666666
Q ss_pred ccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCccc
Q 043372 194 SDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFI 248 (342)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 248 (342)
++|.+....+ +..+ ++|++|++++|.+.+.. .+..+++|+.|++++|.+.
T Consensus 181 ~~n~l~~~~~--l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 181 DDNKISDISP--LASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCCCGG--GGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCccCcChh--hcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 6655543221 3333 56677777776665332 2556677777777777665
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=157.65 Aligned_cols=204 Identities=15% Similarity=0.159 Sum_probs=112.0
Q ss_pred cCccEEEecccccccccCccc--cCCCCCCEEeCcCCCCCCCCC----ccccCCCCCCcEEEccCCccCCCCCccccCCC
Q 043372 60 KRMRIIAFGINKLSGEIPFSI--YNLSSLSVFDFPVNQLQGSFP----SDLGFTLPNLELLNVADNQFAGPIPASISNTS 133 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 133 (342)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+. .+++|++|++++|.+.+..+..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCC
Confidence 446666666665555555544 555556666665555543222 1111 355555555555555544444555555
Q ss_pred CccEEEccCCcCcC---CC--CCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhc
Q 043372 134 NLMTLAIGGNGFSG---KV--PSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGN 208 (342)
Q Consensus 134 ~L~~L~l~~~~~~~---~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 208 (342)
+|++|++++|.+.. .. ..+..+++|+.|++++|.+.... ..... .+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~-----------------------l~~~ 222 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT----GVCAA-----------------------LAAA 222 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----HHHHH-----------------------HHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----HHHHH-----------------------HHhc
Confidence 55555555554332 11 11234444555555444442110 00000 1122
Q ss_pred cCCCccEEEecCcccccccCccccCc---CCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCc
Q 043372 209 LSTRLRKLSVGNNQLFGNIPSGLRNL---VNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASL 285 (342)
Q Consensus 209 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 285 (342)
+ ++|++|++++|.+.+..+..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|++.+ +|. +..+++|
T Consensus 223 l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L 296 (310)
T 4glp_A 223 G-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEV 296 (310)
T ss_dssp T-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCC
T ss_pred C-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCc
Confidence 2 567777777777665444444444 57888888888877 4555443 688888888888773 333 5677888
Q ss_pred cEEecCCccccc
Q 043372 286 TILDFSANLLEG 297 (342)
Q Consensus 286 ~~L~l~~n~~~~ 297 (342)
+.|++++|++++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 888888888763
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2e-19 Score=146.56 Aligned_cols=178 Identities=21% Similarity=0.290 Sum_probs=92.5
Q ss_pred CCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcc
Q 043372 110 NLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRL 188 (342)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L 188 (342)
..++++++++.+. .+|..+. +.++.|++++|.+....+. +.++++|+.|++++|.+.... ...+..+++|
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L 85 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS------AGVFDDLTEL 85 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC------TTTTTTCTTC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC------HhHhccCCcC
Confidence 4566777766665 3444432 5677777777776665543 666677777777766655422 1123344445
Q ss_pred cEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccC
Q 043372 189 ELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNG 268 (342)
Q Consensus 189 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (342)
++|++++ |.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 86 ~~L~L~~-------------------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 86 GTLGLAN-------------------------NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CEEECTT-------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCC-------------------------CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 5555544 444433333444445555555555554433333344455555555555
Q ss_pred CeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCcc
Q 043372 269 NKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 269 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+
T Consensus 141 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 55443333344445555555555555554333444455555555555555543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=156.13 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=131.5
Q ss_pred CccEEEecccccccccCc---cccCCCCCCEEeCcCCCCCCCCCcccc-CCCCCCcEEEccCCccCCCCC----ccccCC
Q 043372 61 RMRIIAFGINKLSGEIPF---SIYNLSSLSVFDFPVNQLQGSFPSDLG-FTLPNLELLNVADNQFAGPIP----ASISNT 132 (342)
Q Consensus 61 ~L~~L~l~~~~i~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~ 132 (342)
.++.+.+.++.+...... .+..+++|++|++++|.+.+..|..++ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666554421110 112335567777777666655555442 356666666666666654322 222345
Q ss_pred CCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCC
Q 043372 133 SNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLST 211 (342)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 211 (342)
++|++|++++|.+....+. +..+++|+.|++++|.+.... ... ....+..+ +
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~----------------------~~~~~~~l-~ 197 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER----GLM----------------------AALCPHKF-P 197 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH----HHH----------------------TTSCTTSS-C
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch----hhh----------------------HHHhhhcC-C
Confidence 6666666666665544432 555556666666555432100 000 00001122 4
Q ss_pred CccEEEecCcccccccCc----cccCcCCCCEEEcCCCcccccCCcccccc---cCcceEEccCCeeeeeccccccCCCC
Q 043372 212 RLRKLSVGNNQLFGNIPS----GLRNLVNLELLDLGDNQFIGRIPESIGYL---QKLQGLWLNGNKFLGEIPSSIGNLAS 284 (342)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (342)
+|++|++++|++.. .+. .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|++. .+|..+. ++
T Consensus 198 ~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~ 273 (310)
T 4glp_A 198 AIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AK 273 (310)
T ss_dssp CCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred CCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CC
Confidence 66777777776642 111 23566788888888888876656555555 68888888888877 5665553 67
Q ss_pred ccEEecCCcccccccCccccCCCCCcEEEcCCCcCcc
Q 043372 285 LTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSG 321 (342)
Q Consensus 285 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 321 (342)
|++|++++|++++ ++. +..+++|+.|++++|+++.
T Consensus 274 L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 274 LRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 8888888888774 333 5667888888888888763
No 95
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=4.3e-19 Score=150.54 Aligned_cols=294 Identities=12% Similarity=0.096 Sum_probs=145.8
Q ss_pred CCCCcccCC--CCcccEEEeeccccccCccccccC-CCCCceeeccccccc--cCCchhhcCccCccEEEeccccccccc
Q 043372 2 GKVPGKLGS--IPKLRILTVHANYLSGEIPSSFGN-LSSLEVLSATANQFV--GRIPETLRDIKRMRIIAFGINKLSGEI 76 (342)
Q Consensus 2 ~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~~~ 76 (342)
|.++..+.. +++++.|.++++- .......+.. +++|++|+|++|++. ......+ +.++.+.+..+.|.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~--- 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP--- 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---
T ss_pred CcHHhhccchhhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---
Confidence 555555553 6677888887642 2112223333 677888888888776 2221122 22444555444332
Q ss_pred CccccC--------CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcC---
Q 043372 77 PFSIYN--------LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGF--- 145 (342)
Q Consensus 77 ~~~~~~--------l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--- 145 (342)
..+|.. +++|+.+++.. .++ .++...+..+++|+.++++.+.+....+..|..+.++..+.......
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred HHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc
Confidence 345555 78888888877 666 66666666778888888877776655566666666666665543211
Q ss_pred -cCCCC-CccccCccc-EEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcc
Q 043372 146 -SGKVP-SFENLHKLR-EVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQ 222 (342)
Q Consensus 146 -~~~~~-~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 222 (342)
..+.. .+.++..++ .+.+...... .......-.... +++.+.+.+.-
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~~l-----~~~~~~~~~~~~-------------------------~~~~l~~~~~l 213 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMGKL-----EDEIMKAGLQPR-------------------------DINFLTIEGKL 213 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTCCH-----HHHHHHTTCCGG-------------------------GCSEEEEEECC
T ss_pred cccccccccccccccceeEEecCCCcH-----HHHHhhcccCcc-------------------------ccceEEEeeee
Confidence 11111 144444444 2322211100 000001111223 33333333321
Q ss_pred cccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCcc-EEecCCcccccccCc
Q 043372 223 LFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLT-ILDFSANLLEGSIPS 301 (342)
Q Consensus 223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~ 301 (342)
...........+++|+.+++++|.+....+.+|..+.+|+.+++.++ +......+|.+|++|+ .+++.+ .+....+.
T Consensus 214 ~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 214 DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTT
T ss_pred cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchh
Confidence 11000011112455555555555555444445555555555555554 3333344555555555 555555 34433445
Q ss_pred cccCCCCCcEEEcCCCcCccccchhhcCccccceee
Q 043372 302 SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYL 337 (342)
Q Consensus 302 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l 337 (342)
.|.+|++|+.+++.++.+....+.+|.++++| +.+
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L-~~l 326 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPS-KLI 326 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCC-CEE
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcch-hhh
Confidence 55556666666665555554444455555555 444
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3.3e-18 Score=146.32 Aligned_cols=240 Identities=17% Similarity=0.139 Sum_probs=122.9
Q ss_pred cEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccC-ccccCCCCCCE-EeCc
Q 043372 15 RILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIP-FSIYNLSSLSV-FDFP 92 (342)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~-l~l~ 92 (342)
++++.+++.++. +|..+ .+++++|++++|.++.+.+.+|.++++|++|+|++|.+.+..+ .+|..++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 455555555552 23322 2455666666666655444555566666666666665543322 34455555443 2333
Q ss_pred CCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCC-cCcCCCCCccccCcccEEEcccCCCCCC
Q 043372 93 VNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGN-GFSGKVPSFENLHKLREVSISQNPLGNG 171 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 171 (342)
.|.++ .++...+..+++|++|++++|.+....+..+....++..+++.++ .+......
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-------------------- 147 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------------------- 147 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT--------------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc--------------------
Confidence 34444 333333334555555555555544333333333333444444322 11111111
Q ss_pred CCCchhhhhhhccC-CcccEEEeccCCCCCCCccchhccCCCccEEEecC-cccccccCccccCcCCCCEEEcCCCcccc
Q 043372 172 EKDDLEFVNSLVNT-SRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGN-NQLFGNIPSGLRNLVNLELLDLGDNQFIG 249 (342)
Q Consensus 172 ~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (342)
.+..+ ..++.++++++.+.......+ .. .+++++.+.+ +.+.......+..+++|++|++++|.++.
T Consensus 148 ---------~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 148 ---------SFVGLSFESVILWLNKNGIQEIHNSAF-NG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ---------SSTTSBSSCEEEECCSSCCCEECTTSS-TT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ---------chhhcchhhhhhccccccccCCChhhc-cc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 11111 235555555555543222222 22 4688888875 44553444567888888999998888874
Q ss_pred cCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCc
Q 043372 250 RIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSAN 293 (342)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 293 (342)
..+.. +.+|+.|...++.-...+| .+..+++|+.+++.++
T Consensus 217 lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 217 LPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 43333 4456666665554444555 4677888888888754
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=6.6e-18 Score=144.46 Aligned_cols=229 Identities=19% Similarity=0.175 Sum_probs=170.5
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccC-CchhhcCccCccE-EEecccccccccCccc
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGR-IPETLRDIKRMRI-IAFGINKLSGEIPFSI 80 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~l~~~~i~~~~~~~~ 80 (342)
++|..+. +++++|++++|.++.....+|.++++|++|++++|.+.+. .+.+|.+++++++ +.+..|++....+..|
T Consensus 23 ~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 5676553 6899999999999977777899999999999999998654 4457889998876 5567788987778899
Q ss_pred cCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccC-CccCCCCCccccCC-CCccEEEccCCcCcCCCCCccccCcc
Q 043372 81 YNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVAD-NQFAGPIPASISNT-SNLMTLAIGGNGFSGKVPSFENLHKL 158 (342)
Q Consensus 81 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L 158 (342)
..+++|+++++++|.+. .++...+....++..+++.+ +.+....+..|..+ ..++.|++++|.+..+.+......++
T Consensus 101 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 99999999999999998 66655554567788898865 44554444455555 46899999999998877765566789
Q ss_pred cEEEccc-CCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCC
Q 043372 159 REVSISQ-NPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNL 237 (342)
Q Consensus 159 ~~l~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 237 (342)
+.+.+.+ +.+..... ..+..+++|+.|++++|.+... +.. ...++++|.+.++.-...+| .+..+++|
T Consensus 180 ~~l~l~~~n~l~~i~~------~~f~~l~~L~~LdLs~N~l~~l-p~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L 248 (350)
T 4ay9_X 180 DELNLSDNNNLEELPN------DVFHGASGPVILDISRTRIHSL-PSY---GLENLKKLRARSTYNLKKLP-TLEKLVAL 248 (350)
T ss_dssp EEEECTTCTTCCCCCT------TTTTTEECCSEEECTTSCCCCC-CSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred hHHhhccCCcccCCCH------HHhccCcccchhhcCCCCcCcc-Chh---hhccchHhhhccCCCcCcCC-CchhCcCh
Confidence 9999875 55554332 2456778899999988877643 221 12567788776664333444 46678888
Q ss_pred CEEEcCCC
Q 043372 238 ELLDLGDN 245 (342)
Q Consensus 238 ~~L~l~~~ 245 (342)
+.+++.++
T Consensus 249 ~~l~l~~~ 256 (350)
T 4ay9_X 249 MEASLTYP 256 (350)
T ss_dssp CEEECSCH
T ss_pred hhCcCCCC
Confidence 88888764
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.5e-18 Score=137.23 Aligned_cols=178 Identities=18% Similarity=0.231 Sum_probs=129.0
Q ss_pred cEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCC
Q 043372 15 RILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVN 94 (342)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~ 94 (342)
+.++.+++.++.. +..+ .++|++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4566666665533 2222 457888888888887766666778888888888888887555556778888888888888
Q ss_pred CCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCC
Q 043372 95 QLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEK 173 (342)
Q Consensus 95 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~ 173 (342)
.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. +..+++|+.+++++|.+..
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 887 55555544678888888888888765555677788888888888887766655 6778888888888886543
Q ss_pred CchhhhhhhccCCcccEEEeccCCCCCCCccchhcc
Q 043372 174 DDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNL 209 (342)
Q Consensus 174 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~ 209 (342)
.++.++.+.+..+.+.+.++..+..+
T Consensus 163 ----------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ----------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ----------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ----------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 34677777777777777777666555
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.6e-18 Score=135.06 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=94.1
Q ss_pred cCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEE
Q 043372 60 KRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLA 139 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 139 (342)
++|++|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46666666666666444455566666666666666665 44444444566666666666666644444456666666666
Q ss_pred ccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEe
Q 043372 140 IGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSV 218 (342)
Q Consensus 140 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 218 (342)
+++|.+....+. +..+++|+.|++++|.+..... ..+..+++|+.+++++|.+.. . ++.++.|++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~~-------~-~~~l~~L~~ 172 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNPWDC-------T-CPGIRYLSE 172 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSCCBCC-------C-TTTTHHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCH------HHhccCCCccEEEecCCCeec-------C-CCCHHHHHH
Confidence 666666655444 5666666666666666554221 234455666666666664431 1 145666666
Q ss_pred cCcccccccCccccCcC
Q 043372 219 GNNQLFGNIPSGLRNLV 235 (342)
Q Consensus 219 ~~~~~~~~~~~~~~~~~ 235 (342)
+.+++.+.++..+..++
T Consensus 173 ~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHCTTTBBCTTSSBC
T ss_pred HHHhCCceeeccCcccc
Confidence 66666655555554443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.7e-17 Score=149.32 Aligned_cols=186 Identities=27% Similarity=0.371 Sum_probs=92.7
Q ss_pred CccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEc
Q 043372 61 RMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAI 140 (342)
Q Consensus 61 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 140 (342)
+|+.|++++|.+.+ +|..+ +++|++|++++|.++ .+| . .+++|++|++++|.+.+ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 56666666665553 33333 245555555555555 444 1 24555555555555543 333 222 4555555
Q ss_pred cCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecC
Q 043372 141 GGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGN 220 (342)
Q Consensus 141 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 220 (342)
++|.+..++. .++ +|+.|++++|.+.. ++. .+++|++|++++
T Consensus 128 s~N~l~~lp~---~l~------------------------------~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 128 DNNQLTMLPE---LPA------------------------------LLEYINADNNQLTM-LPE----LPTSLEVLSVRN 169 (571)
T ss_dssp CSSCCSCCCC---CCT------------------------------TCCEEECCSSCCSC-CCC----CCTTCCEEECCS
T ss_pred CCCcCCCCCC---cCc------------------------------cccEEeCCCCccCc-CCC----cCCCcCEEECCC
Confidence 5444443222 233 33444444333322 121 125677777777
Q ss_pred cccccccCccccCcCCCCEEEcCCCcccccCCcccccccCc-------ceEEccCCeeeeeccccccCCCCccEEecCCc
Q 043372 221 NQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKL-------QGLWLNGNKFLGEIPSSIGNLASLTILDFSAN 293 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 293 (342)
|.+.+ ++. +. ++|+.|++++|.+. .+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 76654 333 33 67777777777666 3443 322 44 66666666555 45554545566666666666
Q ss_pred ccccccCccccC
Q 043372 294 LLEGSIPSSLGK 305 (342)
Q Consensus 294 ~~~~~~~~~~~~ 305 (342)
++.+.+|..+..
T Consensus 241 ~l~~~~p~~l~~ 252 (571)
T 3cvr_A 241 PLSSRIRESLSQ 252 (571)
T ss_dssp SCCHHHHHHHHH
T ss_pred cCCCcCHHHHHH
Confidence 655544444433
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.2e-17 Score=134.03 Aligned_cols=152 Identities=21% Similarity=0.291 Sum_probs=118.1
Q ss_pred ccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcC
Q 043372 14 LRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPV 93 (342)
Q Consensus 14 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~ 93 (342)
-+.++.+++.++. .+..+ .++|++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4567777777663 33333 37888888888888877777888888888888888888755556678888888888888
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCC
Q 043372 94 NQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGN 170 (342)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~ 170 (342)
|.++ .++...+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+....+. +..+++|+.+++.+|.+..
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8887 666655556888888888888887 5677778888888888888888876654 7888888888888887764
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=8.3e-18 Score=133.95 Aligned_cols=152 Identities=21% Similarity=0.272 Sum_probs=131.0
Q ss_pred cEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCC
Q 043372 15 RILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVN 94 (342)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~ 94 (342)
+.++++++.++. .+..+. +++++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 678888888774 344332 68999999999998887778999999999999999999888889999999999999999
Q ss_pred CCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCC
Q 043372 95 QLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGN 170 (342)
Q Consensus 95 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~ 170 (342)
.++ .+|...+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+. +..+++|+.+++++|.+..
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 998 77877766799999999999999877788889999999999999999887765 8889999999999998754
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.2e-17 Score=132.98 Aligned_cols=141 Identities=19% Similarity=0.269 Sum_probs=85.0
Q ss_pred CCCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccC
Q 043372 3 KVPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYN 82 (342)
Q Consensus 3 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 82 (342)
++|..+. +++++|++++|.++...+..|..+++|++|++++|.+++..+.+|.++++|++|++++|.+....+..+..
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 3444333 45666666666666555556666666666666666666555666666666666666666666444445566
Q ss_pred CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCc
Q 043372 83 LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFS 146 (342)
Q Consensus 83 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 146 (342)
+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|+.+++++|++.
T Consensus 103 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 103 LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666666666666666 333333335666666666666666555555666666666666666554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=6.7e-18 Score=140.45 Aligned_cols=170 Identities=20% Similarity=0.303 Sum_probs=87.1
Q ss_pred CCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcE
Q 043372 34 NLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLEL 113 (342)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 113 (342)
.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. + ..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L-KDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-TTCTTCCE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-ccCCCCCE
Confidence 345555555555555433 124455555555555555553222 555555555555555554 2322 2 24555555
Q ss_pred EEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEe
Q 043372 114 LNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEI 193 (342)
Q Consensus 114 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l 193 (342)
|++++|.+... ..+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.... .+..+++|+.|++
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~L 185 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--------PLAGLTKLQNLYL 185 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--------GGTTCTTCCEEEC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch--------hhcCCCccCEEEC
Confidence 55555555432 2344555555555555555544 34555556666666655554321 1445556666666
Q ss_pred ccCCCCCCCccchhccCCCccEEEecCcccc
Q 043372 194 SDTNCGGMLPEAVGNLSTRLRKLSVGNNQLF 224 (342)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 224 (342)
++|.+... ..+..+ ++|+.|++++|.+.
T Consensus 186 ~~N~i~~l--~~l~~l-~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 186 SKNHISDL--RALAGL-KNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCBC--GGGTTC-TTCSEEEEEEEEEE
T ss_pred CCCcCCCC--hhhccC-CCCCEEECcCCccc
Confidence 66555432 123333 56666776666654
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=8.3e-18 Score=131.71 Aligned_cols=151 Identities=13% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEE
Q 043372 10 SIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVF 89 (342)
Q Consensus 10 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l 89 (342)
.+++|++|+++++.++.. + .+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 445555555555555422 2 355555555555555544321 245555555555555555554445555555555555
Q ss_pred eCcCCCCCCCCCccccCCCCCCcEEEccCCc-cCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCC
Q 043372 90 DFPVNQLQGSFPSDLGFTLPNLELLNVADNQ-FAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPL 168 (342)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 168 (342)
++++|.+++..+..+. .+++|++|++++|. +. .++ .+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 5555555432333332 35555555555554 32 222 3444555555555555544332 344445555555554443
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.6e-17 Score=131.10 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=107.0
Q ss_pred cEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCcc-chhccCCCccEEEecCcccccccCccccCcCCC
Q 043372 159 REVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPE-AVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNL 237 (342)
Q Consensus 159 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 237 (342)
+.++++++.+..+... -.+.++.|+++++.+....+. .+..+ ++|++|++++|.+....+..+..+++|
T Consensus 14 ~~l~~s~n~l~~iP~~---------~~~~~~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH---------IPQYTAELRLNNNEFTVLEATGIFKKL-PQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSSCCSC---------CCTTCSEEECCSSCCCEECCCCCGGGC-TTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEeEeCCCCcccCccC---------CCCCCCEEEcCCCcCCccCchhhhccC-CCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 4677777766543321 123456777777776654332 24444 677777777777765555567777777
Q ss_pred CEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCC
Q 043372 238 ELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNN 317 (342)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~ 317 (342)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 77777777777666666777777777777777777666677777777777777777777666777777777777777777
Q ss_pred cCccccc
Q 043372 318 NLSGTIP 324 (342)
Q Consensus 318 ~~~~~~~ 324 (342)
++.+..+
T Consensus 164 ~l~c~c~ 170 (220)
T 2v70_A 164 PFNCNCY 170 (220)
T ss_dssp CEECSGG
T ss_pred CCcCCCc
Confidence 7765443
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=7.9e-18 Score=142.75 Aligned_cols=265 Identities=13% Similarity=0.118 Sum_probs=167.9
Q ss_pred CCCCceeeccccccccCCchhhcC-ccCccEEEecccccc--cccCccccCCCCCCEEeCcCCCCCCCCCccccCC----
Q 043372 35 LSSLEVLSATANQFVGRIPETLRD-IKRMRIIAFGINKLS--GEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFT---- 107 (342)
Q Consensus 35 ~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~---- 107 (342)
+.+++.|.++++- .......+.. +++|+.|+|++|.|. .... +.++.++...+..+ .+|...+..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhcccccc
Confidence 5678888888652 2122234444 788999999999887 2222 12222444444444 455666666
Q ss_pred ----CCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCC----CCCCCCchhh
Q 043372 108 ----LPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPL----GNGEKDDLEF 178 (342)
Q Consensus 108 ----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~----~~~~~~~~~~ 178 (342)
+++|+.+++.+ .+..+....|..|++|+++++..|.+..+.+. |.++.++..+....... ....
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~------ 168 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE------ 168 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT------
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc------
Confidence 88999999987 66656667788888999999888877655444 66666666655543210 0000
Q ss_pred hhhhccCCcccEEEeccCCCCCCCccchhccCCCcc-EEEecCccc-ccccCccccCcCCCCEEEcCCCcccccCCcccc
Q 043372 179 VNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLR-KLSVGNNQL-FGNIPSGLRNLVNLELLDLGDNQFIGRIPESIG 256 (342)
Q Consensus 179 ~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (342)
...+..+ ..++ .+.+..... .......-....++..+.+.+.-..........
T Consensus 169 ~~~f~~~-------------------------~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~ 223 (329)
T 3sb4_A 169 HFAFIEG-------------------------EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRD 223 (329)
T ss_dssp TSCEEES-------------------------CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHH
T ss_pred ccccccc-------------------------cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHH
Confidence 0011122 2233 233322211 100111111345667777766422211111222
Q ss_pred cccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCc-EEEcCCCcCccccchhhcCccccce
Q 043372 257 YLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLI-SLNLSNNNLSGTIPTEVIGLSSLSI 335 (342)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~l~~l~~ 335 (342)
.+++|+.+++++|.+.......|.+|++|+.+++.+| +.......|.+|++|+ .+++.+ .++...+.+|.+|++| +
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L-~ 300 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL-R 300 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE-E
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC-C
Confidence 4789999999999988666678999999999999998 6656778999999999 999999 7775667899999999 9
Q ss_pred eeccCCC
Q 043372 336 YLDLSQN 342 (342)
Q Consensus 336 ~l~l~~n 342 (342)
.+++++|
T Consensus 301 ~l~l~~n 307 (329)
T 3sb4_A 301 YVLATGD 307 (329)
T ss_dssp EEEECSS
T ss_pred EEEeCCC
Confidence 9998654
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=131.03 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=129.6
Q ss_pred ccEEEeeccccccCccccccCCCCCceeeccccccccCCc-hhhcCccCccEEEecccccccccCccccCCCCCCEEeCc
Q 043372 14 LRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIP-ETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFP 92 (342)
Q Consensus 14 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~ 92 (342)
-++++++++.++. ++..+ .+.+++|++++|.+++..+ ..|.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3689999998875 34433 3567899999999987644 468899999999999999997777789999999999999
Q ss_pred CCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCC
Q 043372 93 VNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGN 170 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~ 170 (342)
+|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. +..+++|+.+++++|.+..
T Consensus 90 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99998 66665555799999999999999987788899999999999999999887554 8899999999999998764
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3e-17 Score=128.50 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=78.2
Q ss_pred cccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCcccc
Q 043372 153 ENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLR 232 (342)
Q Consensus 153 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 232 (342)
..+++|+.++++++.+...+ .+..+++|++|++++|.+.. ...+..+ ++|++|++++|.+.+..+..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--------~l~~l~~L~~L~l~~n~~~~--~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--------GIEYAHNIKDLTINNIHATN--YNPISGL-SNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--------TGGGCTTCSEEEEESCCCSC--CGGGTTC-TTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCccChH--------HHhcCCCCCEEEccCCCCCc--chhhhcC-CCCCEEEeECCccCcccChhhc
Confidence 45566666666666554321 24455566666666553321 1233333 4555555555555544444555
Q ss_pred CcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEE
Q 043372 233 NLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISL 312 (342)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l 312 (342)
.+++|++|++++|.+.+..+..+..+++|++|++++|...+.++ .+..+++|++|++++|.+.+ ++ .+..+++|+.|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 55555555555555554444445555555555555554222333 34555555555555555542 22 44555555555
Q ss_pred EcCCCcCc
Q 043372 313 NLSNNNLS 320 (342)
Q Consensus 313 ~l~~~~~~ 320 (342)
++++|++.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 55555554
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.4e-17 Score=135.48 Aligned_cols=186 Identities=24% Similarity=0.323 Sum_probs=128.8
Q ss_pred EEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCC
Q 043372 64 IIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGN 143 (342)
Q Consensus 64 ~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 143 (342)
.+.+....+.+. ..+..+++|+.+++++|.+. .++. +. .+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 28 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHhcCCCcccc--cchhhcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 334444444422 22456788999999999887 5554 33 58899999999998875433 788899999999998
Q ss_pred cCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCccc
Q 043372 144 GFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQL 223 (342)
Q Consensus 144 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 223 (342)
.+... +.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+ ++|++|++++|.+
T Consensus 101 ~l~~~-~~l~~l~~L~~L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~N~l 168 (291)
T 1h6t_A 101 KVKDL-SSLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQI 168 (291)
T ss_dssp CCCCG-GGGTTCTTCCEEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCC
T ss_pred cCCCC-hhhccCCCCCEEECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCcc--hhhccC-CCCCEEEccCCcc
Confidence 87764 3478888888888888877652 2456677778888877766543 344444 5777777777777
Q ss_pred ccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeee
Q 043372 224 FGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFL 272 (342)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 272 (342)
.+..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 64332 66677777777777777632 2 3666777777777777765
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=142.33 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=87.6
Q ss_pred cEEEeeccccccCccccccCCCCCceeeccccccccCCchhhc-CccCccEEEecccccccccCccccCCCCCCEEeCcC
Q 043372 15 RILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLR-DIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPV 93 (342)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~ 93 (342)
++++++++.++. ++..+ .+.++.|++++|.+++..+..+. ++++|++|++++|.|....+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 455666555553 23222 23456666666666655555555 566666666666666655555566666666666666
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-c---cccCcccEEEcccCCCC
Q 043372 94 NQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-F---ENLHKLREVSISQNPLG 169 (342)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~---~~~~~L~~l~l~~~~~~ 169 (342)
|.++ .++...+..+++|++|++++|.+....+..|..+++|++|++++|.+...... + ..+++|+.|++++|.+.
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 6665 44444444566666666666666555555566666666666666666554443 2 44666666666666655
Q ss_pred C
Q 043372 170 N 170 (342)
Q Consensus 170 ~ 170 (342)
.
T Consensus 177 ~ 177 (361)
T 2xot_A 177 K 177 (361)
T ss_dssp C
T ss_pred c
Confidence 4
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=5.5e-17 Score=147.51 Aligned_cols=191 Identities=19% Similarity=0.323 Sum_probs=136.2
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEE
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLN 115 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 115 (342)
..+..+.+..+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++. + ..+++|++|+
T Consensus 21 ~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-L-TNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-G-GGCTTCCEEE
T ss_pred HHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-h-ccCCCCCEEE
Confidence 34555666666666443 25678889999999988873 33 5788899999999999887 4444 3 3688899999
Q ss_pred ccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEecc
Q 043372 116 VADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISD 195 (342)
Q Consensus 116 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 195 (342)
+++|.+.. + ..+..+++|+.|++++|.+... +.+..+++|+.|++++|.+... ..+..+++|+.|++++
T Consensus 94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECCS
T ss_pred CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECcC
Confidence 99888864 3 3577888888888888887764 4577888888888888877652 3566777777777777
Q ss_pred CCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccc
Q 043372 196 TNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIG 249 (342)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (342)
|.+....+ +..+ ++|++|++++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 163 N~l~~~~~--l~~l-~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 163 NQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCCCGG--GTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCchh--hccC-CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 77665433 4444 5777777777777532 346667777777777777654
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=9.8e-17 Score=128.61 Aligned_cols=157 Identities=23% Similarity=0.263 Sum_probs=125.9
Q ss_pred cccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCC
Q 043372 157 KLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVN 236 (342)
Q Consensus 157 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 236 (342)
.-+.++.+++.+..+... -.++|+.|+++++.+....+..+..+ ++|++|++++|.+....+..+..+++
T Consensus 20 s~~~v~c~~~~l~~ip~~---------~~~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG---------IPTNAQILYLHDNQITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp ETTEEECTTSCCSSCCSC---------CCTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred eCCEeEccCCCcCccCCC---------CCCCCCEEEcCCCccCccCHHHhhCc-cCCcEEECCCCCCCCcChhhcccCCC
Confidence 456678777766654321 23789999999998887666667666 68999999999987555666788899
Q ss_pred CCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCC
Q 043372 237 LELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSN 316 (342)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 316 (342)
|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++.+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 999999999988766667788899999999999887 7788888889999999999998865567788899999999999
Q ss_pred CcCccccc
Q 043372 317 NNLSGTIP 324 (342)
Q Consensus 317 ~~~~~~~~ 324 (342)
|++.+..+
T Consensus 169 N~~~c~c~ 176 (229)
T 3e6j_A 169 NPWDCECR 176 (229)
T ss_dssp SCBCTTBG
T ss_pred CCccCCcc
Confidence 99886544
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=1.4e-16 Score=143.35 Aligned_cols=184 Identities=24% Similarity=0.294 Sum_probs=130.6
Q ss_pred CCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEc
Q 043372 37 SLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNV 116 (342)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 116 (342)
+++.|++++|.+++ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++ .+|. +. .+|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEEC
Confidence 89999999999987 44434 378999999999998 566 56899999999999998 5777 43 29999999
Q ss_pred cCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccC
Q 043372 117 ADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDT 196 (342)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~ 196 (342)
++|.+.+ +|. .+++|+.|++++|.+...+. .+++|+.|++++|.+..... +. ++|+.|++++|
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--------l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--------LP--ESLEALDVSTN 190 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--------CC--TTCCEEECCSS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--------hh--CCCCEEECcCC
Confidence 9999985 555 68999999999999887554 57889999999988765321 11 66777777776
Q ss_pred CCCCCCccchhccCCCc-------cEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCccc
Q 043372 197 NCGGMLPEAVGNLSTRL-------RKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESI 255 (342)
Q Consensus 197 ~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (342)
.+. .++. +. .+| +.|++++|.+. .++..+..+++|+.|++++|.+.+..|..+
T Consensus 191 ~L~-~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 191 LLE-SLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCC-chhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 655 2333 21 134 56666666555 344444445566666666665554444433
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.4e-16 Score=144.93 Aligned_cols=192 Identities=23% Similarity=0.320 Sum_probs=142.9
Q ss_pred cCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEE
Q 043372 60 KRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLA 139 (342)
Q Consensus 60 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 139 (342)
..+..+.+..+.+.+.. .+..++.|+.|+++++.+. .++. +. .+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 34445556666555333 2467889999999999987 5653 33 58999999999999875443 78899999999
Q ss_pred ccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEec
Q 043372 140 IGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVG 219 (342)
Q Consensus 140 l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 219 (342)
+++|.+... +.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+ ++|+.|+++
T Consensus 94 Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls 161 (605)
T 1m9s_A 94 LDENKIKDL-SSLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLE 161 (605)
T ss_dssp CCSSCCCCC-TTSTTCTTCCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECC
T ss_pred CcCCCCCCC-hhhccCCCCCEEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECc
Confidence 999988764 4688899999999999987652 3466778888888888877654 445555 678888888
Q ss_pred CcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeee
Q 043372 220 NNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGE 274 (342)
Q Consensus 220 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (342)
+|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 888764433 67778888888888887743 3467778888888888877643
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=1.1e-16 Score=137.34 Aligned_cols=177 Identities=23% Similarity=0.180 Sum_probs=98.8
Q ss_pred cEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhc-cCCcccEEEeccCCCCCCCccchhccCCCcc
Q 043372 136 MTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLV-NTSRLELLEISDTNCGGMLPEAVGNLSTRLR 214 (342)
Q Consensus 136 ~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 214 (342)
+.++.+++.+...+..+ .+.++.|++++|.+..... ..+. .+++|+.|++++|.+....+..+..+ ++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRA------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLR 91 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECT------TSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTCC
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccCh------hhhhhcccccCEEECCCCcCCccChhhccCC-CCCC
Confidence 46677777666554433 2457777777776654221 1233 55666666666666554444444444 4566
Q ss_pred EEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccc---cCCCCccEEecC
Q 043372 215 KLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSI---GNLASLTILDFS 291 (342)
Q Consensus 215 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~ 291 (342)
+|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 66666666654444455566666666666666665555556666666666666666653222223 345666666666
Q ss_pred CcccccccCccccCCCC--CcEEEcCCCcCcc
Q 043372 292 ANLLEGSIPSSLGKCQN--LISLNLSNNNLSG 321 (342)
Q Consensus 292 ~n~~~~~~~~~~~~~~~--L~~l~l~~~~~~~ 321 (342)
+|.+.+..+..+..++. ++.|++.+|++.+
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 66665333344444554 3556666666654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=9e-17 Score=131.55 Aligned_cols=146 Identities=16% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEe
Q 043372 11 IPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFD 90 (342)
Q Consensus 11 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~ 90 (342)
+.+++.++++++.+++.. .+..+++|++|++++|.++... .+..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555555555554322 3455566666666666655332 45556666666666666653322 55666666666
Q ss_pred CcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCC
Q 043372 91 FPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLG 169 (342)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 169 (342)
+++|.++ .++... . ++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+.
T Consensus 92 L~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred CCCCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc
Confidence 6666655 333221 1 5566666666655432 23555556666666655555432 3555555555555555544
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.9e-16 Score=120.71 Aligned_cols=134 Identities=22% Similarity=0.225 Sum_probs=76.7
Q ss_pred cCCcccEEEeccCCCC-CCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcc
Q 043372 184 NTSRLELLEISDTNCG-GMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQ 262 (342)
Q Consensus 184 ~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 262 (342)
..++++.+++++|.+. ..++..+..+ ++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3356666666666654 3344444444 4666666666665533 4555566666666666666544555555566666
Q ss_pred eEEccCCeeeee-ccccccCCCCccEEecCCcccccccC---ccccCCCCCcEEEcCCCcCc
Q 043372 263 GLWLNGNKFLGE-IPSSIGNLASLTILDFSANLLEGSIP---SSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 263 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~l~l~~~~~~ 320 (342)
.|++++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666666532 11455566666666666666653222 25556666666666666665
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.5e-16 Score=118.79 Aligned_cols=128 Identities=24% Similarity=0.267 Sum_probs=107.9
Q ss_pred CCccEEEecCcccc-cccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEe
Q 043372 211 TRLRKLSVGNNQLF-GNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILD 289 (342)
Q Consensus 211 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 289 (342)
+++++|++++|.+. +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 67889999999887 46677778889999999999988755 6678899999999999999866777777889999999
Q ss_pred cCCcccccc-cCccccCCCCCcEEEcCCCcCccccc---hhhcCccccceeeccCC
Q 043372 290 FSANLLEGS-IPSSLGKCQNLISLNLSNNNLSGTIP---TEVIGLSSLSIYLDLSQ 341 (342)
Q Consensus 290 l~~n~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~l~~l~~~l~l~~ 341 (342)
+++|.+.+. .+..+..+++|+.|++++|++++..+ ..+..++++ ++||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L-~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL-TYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC-CEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc-ccccCCC
Confidence 999998853 34788889999999999999996544 478889999 9999875
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.2e-16 Score=127.59 Aligned_cols=151 Identities=19% Similarity=0.281 Sum_probs=127.5
Q ss_pred ccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCC
Q 043372 7 KLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSL 86 (342)
Q Consensus 7 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 86 (342)
.+.++++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+ .+. +.. ++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L 108 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACL 108 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSC
T ss_pred chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-Ccc
Confidence 467889999999999998754 3 68889999999999999987654 8999999999999999985 333 333 999
Q ss_pred CEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccC
Q 043372 87 SVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQN 166 (342)
Q Consensus 87 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 166 (342)
+.|++++|.++ .++ .+ ..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+. ..+..+++|+.+++++|
T Consensus 109 ~~L~L~~N~l~-~~~-~l-~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 109 SRLFLDNNELR-DTD-SL-IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CEEECCSSCCS-BSG-GG-TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred cEEEccCCccC-CCh-hh-cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 99999999998 554 33 3699999999999999854 3 688899999999999999877 66888999999999988
Q ss_pred CCCC
Q 043372 167 PLGN 170 (342)
Q Consensus 167 ~~~~ 170 (342)
.+..
T Consensus 183 ~~~~ 186 (263)
T 1xeu_A 183 KCVN 186 (263)
T ss_dssp EEEC
T ss_pred cccC
Confidence 7654
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.1e-16 Score=118.85 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=67.1
Q ss_pred CCCceeeccccccc-cCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEE
Q 043372 36 SSLEVLSATANQFV-GRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELL 114 (342)
Q Consensus 36 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 114 (342)
++|++|++++|.++ +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+. .+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCCEE
Confidence 45555555555554 23344445555555555555555432 4455555555555555555422333222 35555555
Q ss_pred EccCCccCCCC-CccccCCCCccEEEccCCcCcCCCC----CccccCcccEEEcccCCCC
Q 043372 115 NVADNQFAGPI-PASISNTSNLMTLAIGGNGFSGKVP----SFENLHKLREVSISQNPLG 169 (342)
Q Consensus 115 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~ 169 (342)
++++|.+.+.. +..+..+++|+.|++++|.+....+ .+..+++|+.+++++|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555554321 1345555566666666665555444 3555566666666655544
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=3.2e-14 Score=123.12 Aligned_cols=264 Identities=9% Similarity=0.116 Sum_probs=138.1
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEE
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLN 115 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 115 (342)
..++.+.+... ++.+...+|.++ +|+.+.+..+ +..+...+|.++ .|+.+.+.. .++ .++...+..+++|+.++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeee
Confidence 44455544432 333344445543 4555555443 443444444442 455555553 333 44444444555556555
Q ss_pred ccCCccCCCCCccccCCCCccEEEccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEec
Q 043372 116 VADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEIS 194 (342)
Q Consensus 116 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~ 194 (342)
+..+.+.......|. +.+|+.+.+..+ +..+... |.++++|+.+.+..+ +...... ++.. .+|+.+.+.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~------aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE------AFRE-SGITTVKLP 256 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT------TTTT-CCCSEEEEE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc------cccc-CCccEEEeC
Confidence 555555433333333 455555555432 2222222 555556666665543 2211111 1112 355555553
Q ss_pred cCCCCCCCccchhccCCCccEEEecCcccc-----cccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCC
Q 043372 195 DTNCGGMLPEAVGNLSTRLRKLSVGNNQLF-----GNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGN 269 (342)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (342)
.+ +...-...+... ++|+.+.+.++.+. ......|..+++|+.+.+.+ .+......+|.++++|+.+.+..+
T Consensus 257 ~~-i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 257 NG-VTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TT-CCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CC-ccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 22 111112222222 55666666554432 23455677778888888874 355566667777888888888554
Q ss_pred eeeeeccccccCCCCccEEecCCcccccccCccccCCC-CCcEEEcCCCcCc
Q 043372 270 KFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQ-NLISLNLSNNNLS 320 (342)
Q Consensus 270 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~l~l~~~~~~ 320 (342)
+...-..+|.++ +|+.+++.+|.........|..++ .++.+++..+.+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 443445677777 788888888766645556666664 6777777766543
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=1.4e-14 Score=125.77 Aligned_cols=310 Identities=14% Similarity=0.051 Sum_probs=146.4
Q ss_pred ccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCC
Q 043372 7 KLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSL 86 (342)
Q Consensus 7 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 86 (342)
.|.+|.+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|..+..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 355666677666653 244445566666667777666543 33344455666666665544322 111222222222221
Q ss_pred CEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCC-CCccccCcccEEEccc
Q 043372 87 SVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKV-PSFENLHKLREVSISQ 165 (342)
Q Consensus 87 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~ 165 (342)
+...... +. .+....+..+.+|+.+.+..+.. ......|..+.+|+.+.+..+ +.... ..+.++..|+.+.+..
T Consensus 143 ~~~~~~~--~~-~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 143 EITIPEG--VT-VIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EEECCTT--CC-EECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCcc--cc-ccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 1111111 11 22222333445555555543221 122333444455555444332 11111 1133444444333322
Q ss_pred CCCCCCCCCch----------------hhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCc
Q 043372 166 NPLGNGEKDDL----------------EFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPS 229 (342)
Q Consensus 166 ~~~~~~~~~~~----------------~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 229 (342)
+...... ..+ -....+..+..++.+.+..+... .....+.. +..++.+......+ ...
T Consensus 218 ~~~~i~~-~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~-~~~l~~~~~~~~~i---~~~ 291 (394)
T 4fs7_A 218 SLYYLGD-FALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYN-CSGLKKVIYGSVIV---PEK 291 (394)
T ss_dssp TCCEECT-TTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTT-CTTCCEEEECSSEE---CTT
T ss_pred CceEeeh-hhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eecccccc-ccccceeccCceee---ccc
Confidence 2110000 000 00112334445555554433211 11111111 23455544443322 223
Q ss_pred cccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCC
Q 043372 230 GLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNL 309 (342)
Q Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 309 (342)
.+..+.+|+.+.+..+ +......++..+.+|+.+.+.++ +...-..+|.+|.+|+.+++..+ +.......|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4556777777777654 44455566777788888887554 44344567777888888888665 443456777888888
Q ss_pred cEEEcCCCcCccccchhhcCcccccee
Q 043372 310 ISLNLSNNNLSGTIPTEVIGLSSLSIY 336 (342)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~l~~l~~~ 336 (342)
+.+++..+ +. .+..++.++.+| ++
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L-~~ 392 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKF-KW 392 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEE-EE
T ss_pred CEEEECCC-CE-EhhheecCCCCC-cE
Confidence 88887654 22 234567777776 44
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=2.3e-15 Score=117.17 Aligned_cols=132 Identities=22% Similarity=0.251 Sum_probs=114.8
Q ss_pred cEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCc-cccCcCCCCEEEcCCCcccccCCcccccccCcceEEcc
Q 043372 189 ELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPS-GLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLN 267 (342)
Q Consensus 189 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 267 (342)
++++++++.+. .++..+ +.++++|++++|.+....+. .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 68888888774 344433 35899999999999755543 47899999999999999998888899999999999999
Q ss_pred CCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccc
Q 043372 268 GNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIP 324 (342)
Q Consensus 268 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 324 (342)
+|++.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999998778889999999999999999998889999999999999999999997655
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=5.5e-15 Score=115.00 Aligned_cols=130 Identities=25% Similarity=0.330 Sum_probs=109.6
Q ss_pred cEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCcc-chhccCCCccEEEecCcccccccCccccCcCCC
Q 043372 159 REVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPE-AVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNL 237 (342)
Q Consensus 159 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 237 (342)
+.++++++.+...... + ...++.|+++++.+....+. .+..+ ++|++|++++|.+.+..+..+..+++|
T Consensus 11 ~~l~~s~~~l~~ip~~-------~--~~~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-------I--PLHTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCCSC-------C--CTTCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcCcCccC-------C--CCCCCEEECCCCcCCccCCccccccC-CCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 6788988887654321 1 23899999999988765544 35555 789999999999987778889999999
Q ss_pred CEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccc
Q 043372 238 ELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGS 298 (342)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 298 (342)
++|++++|.+.+..+..+..+++|++|++++|++.+..|..+..+++|++|++++|.+...
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999999999988888889999999999999999988888999999999999999998754
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=8.3e-16 Score=114.66 Aligned_cols=125 Identities=15% Similarity=0.236 Sum_probs=64.3
Q ss_pred CcccEEEeeccccc-cCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEe
Q 043372 12 PKLRILTVHANYLS-GEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFD 90 (342)
Q Consensus 12 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~ 90 (342)
+++++|++++|.++ +..+..+..+++|++|++++|.+++. ..+.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666555 34444555566666666666655543 4455556666666666655543444444555555555
Q ss_pred CcCCCCCCCCC--ccccCCCCCCcEEEccCCccCCCCC---ccccCCCCccEEEc
Q 043372 91 FPVNQLQGSFP--SDLGFTLPNLELLNVADNQFAGPIP---ASISNTSNLMTLAI 140 (342)
Q Consensus 91 l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 140 (342)
+++|.++ .++ ..+. .+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIK-DLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCC-SHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCC-ChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555554 221 2222 35555555555555443322 23444455554443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=2.2e-17 Score=149.26 Aligned_cols=203 Identities=20% Similarity=0.178 Sum_probs=138.7
Q ss_pred CCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCC-------CCCCchhhhhhhccCCcccEEE-eccCCCCCCC
Q 043372 131 NTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGN-------GEKDDLEFVNSLVNTSRLELLE-ISDTNCGGML 202 (342)
Q Consensus 131 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-------~~~~~~~~~~~l~~~~~L~~l~-l~~~~~~~~~ 202 (342)
.++.|+.|++++|.+...+..++.+++|+.|+++++.... .-.........+..+++|+.|+ ++.+.+....
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 4556666666666665554456666666666654432000 0000002334455566666665 3332211000
Q ss_pred c-----cchhc-cCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeecc
Q 043372 203 P-----EAVGN-LSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIP 276 (342)
Q Consensus 203 ~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (342)
. ..+.. .+..++.|++++|.+.+ ++. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +|
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 0 00111 01468999999999975 555 889999999999999998 778889999999999999999984 66
Q ss_pred ccccCCCCccEEecCCccccccc-CccccCCCCCcEEEcCCCcCccccch---hhcCccccceeecc
Q 043372 277 SSIGNLASLTILDFSANLLEGSI-PSSLGKCQNLISLNLSNNNLSGTIPT---EVIGLSSLSIYLDL 339 (342)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~l~~l~~~l~l 339 (342)
.+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|++++..|. .+..++.| ++|++
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L-~~L~l 567 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV-SSILT 567 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC-SEEEC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc-CccCC
Confidence 7899999999999999999665 89999999999999999999965442 23347888 77764
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=112.93 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=109.9
Q ss_pred cEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccC
Q 043372 189 ELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNG 268 (342)
Q Consensus 189 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (342)
++++.+++.+.. ++.. .++++++|++++|.+. .++..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~-ip~~---~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKG---IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSS-CCSC---CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCc-CCCC---CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 567777776653 3433 3468999999999997 6668889999999999999999987778899999999999999
Q ss_pred CeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccc
Q 043372 269 NKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGT 322 (342)
Q Consensus 269 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 322 (342)
|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|++.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 999977777899999999999999999965566788999999999999999754
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=4.5e-15 Score=113.87 Aligned_cols=133 Identities=20% Similarity=0.207 Sum_probs=83.6
Q ss_pred hccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCc
Q 043372 182 LVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKL 261 (342)
Q Consensus 182 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 261 (342)
+..+++|+.+++++|.+... +.+....++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44566777777777766532 22334434677777777776543 455666777777777777664433444666777
Q ss_pred ceEEccCCeeeeeccc--cccCCCCccEEecCCcccccccCcc----ccCCCCCcEEEcCCCcCc
Q 043372 262 QGLWLNGNKFLGEIPS--SIGNLASLTILDFSANLLEGSIPSS----LGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 262 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~l~l~~~~~~ 320 (342)
++|++++|.+. .++. .+..+++|++|++++|++. .++.. +..+++|+.|++++|+..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777664 4444 5666677777777777766 34443 666777777777776654
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.8e-13 Score=118.46 Aligned_cols=261 Identities=13% Similarity=0.079 Sum_probs=191.7
Q ss_pred ccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEE
Q 043372 59 IKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTL 138 (342)
Q Consensus 59 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 138 (342)
+..++.+.+... ++.+...+|.++ +|+.+.+..+ ++ .++...+.. .+|+.+.+.. .+.......|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 456666666543 554556677775 7999998776 55 666666655 5799999986 5554566789999999999
Q ss_pred EccCCcCcCCCCC-ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEE
Q 043372 139 AIGGNGFSGKVPS-FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLS 217 (342)
Q Consensus 139 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 217 (342)
++..+.+...... |. +.+|+.+.+..+ +.... ..++..|++|+.+.+..+ +...-...+.. .+|+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~------~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~ 254 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIG------SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTVK 254 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEEC------TTTTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEEE
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheeh------hhHhhCCCCCCEEecCCC-ccCcccccccc--CCccEEE
Confidence 9999888776666 44 689999999754 33322 235778899999999864 22222233333 5799999
Q ss_pred ecCcccccccCccccCcCCCCEEEcCCCccc-----ccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCC
Q 043372 218 VGNNQLFGNIPSGLRNLVNLELLDLGDNQFI-----GRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSA 292 (342)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (342)
+.+ ++.......|..+++|+.+.+.++.+. .....+|..|++|+.+.+.++ +...-...|.+|.+|+.+.+..
T Consensus 255 lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECT
T ss_pred eCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECc
Confidence 954 355456778899999999999887654 356678999999999999854 6545567899999999999966
Q ss_pred cccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccC
Q 043372 293 NLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS 340 (342)
Q Consensus 293 n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~ 340 (342)
+ +.......|.+| +|+.+++.++......+..+.+++.-...|.+.
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 5 554567889999 999999999988865566777776432666554
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.8e-16 Score=143.36 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=95.5
Q ss_pred CCCCcccEEEeeccccccCccccccCCCCCceeeccccc-------------cccCCchhhcCccCccEEE-eccccccc
Q 043372 9 GSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQ-------------FVGRIPETLRDIKRMRIIA-FGINKLSG 74 (342)
Q Consensus 9 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~i~~ 74 (342)
..+++|++|++++|.++ .+|..+.++++|+.|+++.+. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45666666777666665 456666666666666665543 2233444555555565555 33332211
Q ss_pred ccC-----ccccC--CCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcC
Q 043372 75 EIP-----FSIYN--LSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSG 147 (342)
Q Consensus 75 ~~~-----~~~~~--l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 147 (342)
... ..+.. ...|+.|++++|.++ .+|. +. .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+..
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 000 00000 113455555555554 3443 22 3455555555555544 344444555555555555554443
Q ss_pred CCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCC-ccchhccCCCccEEEecCcccccc
Q 043372 148 KVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGML-PEAVGNLSTRLRKLSVGNNQLFGN 226 (342)
Q Consensus 148 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 226 (342)
.+ .+.. +++|+.|++++|.+.... +..+..+ ++|+.|++++|.+.+.
T Consensus 501 lp-~l~~------------------------------l~~L~~L~Ls~N~l~~~~~p~~l~~l-~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 VD-GVAN------------------------------LPRLQELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CG-GGTT------------------------------CSSCCEEECCSSCCCSSSTTGGGGGC-TTCCEEECTTSGGGGS
T ss_pred Cc-ccCC------------------------------CCCCcEEECCCCCCCCCCCcHHHhcC-CCCCEEEecCCcCCCC
Confidence 22 3444 445555555555444333 4444444 4666666666666533
Q ss_pred cCc---cccCcCCCCEEE
Q 043372 227 IPS---GLRNLVNLELLD 241 (342)
Q Consensus 227 ~~~---~~~~~~~L~~L~ 241 (342)
.+. .+..+++|+.|+
T Consensus 549 ~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 549 EGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCTTHHHHHCTTCSEEE
T ss_pred ccHHHHHHHHCcccCccC
Confidence 221 122356666664
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=4.4e-14 Score=108.49 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=103.3
Q ss_pred cEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccC
Q 043372 189 ELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNG 268 (342)
Q Consensus 189 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (342)
+.++++++.+.. ++. ..++++++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~~-~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSS-CCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCcc-CCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 455655555442 222 2236789999999988766666678889999999999998866666778899999999999
Q ss_pred CeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccc
Q 043372 269 NKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIP 324 (342)
Q Consensus 269 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 324 (342)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99886666667888999999999999986555567889999999999999987654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=6.8e-14 Score=107.42 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=79.4
Q ss_pred ccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcC
Q 043372 14 LRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPV 93 (342)
Q Consensus 14 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~ 93 (342)
.+.++++++.++... ..+ .++|++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC-CCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456667666665332 222 35677777777777666555666777777777777777654445566677777777777
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCc
Q 043372 94 NQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFS 146 (342)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 146 (342)
|.++ .++...+..+++|++|++++|.+.+..+..+..+++|+++++++|.+.
T Consensus 86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 7666 444444335666666666666666444444455666666666666554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=5.3e-14 Score=109.40 Aligned_cols=127 Identities=22% Similarity=0.226 Sum_probs=101.5
Q ss_pred cEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCC
Q 043372 159 REVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLE 238 (342)
Q Consensus 159 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 238 (342)
+.++++++.+...... -.+.++.|+++++.+. .++..+..+ ++|++|++++|.+....+..+..+++|+
T Consensus 13 ~~l~~~~~~l~~ip~~---------~~~~l~~L~L~~n~i~-~ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG---------IPRDVTELYLDGNQFT-LVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEECTTSCCSSCCSC---------CCTTCCEEECCSSCCC-SCCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEcCCCCCCcCCCC---------CCCCCCEEECCCCcCc-hhHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 5678887777654321 1257899999998876 455666666 7899999999998876777788899999
Q ss_pred EEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccc
Q 043372 239 LLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLE 296 (342)
Q Consensus 239 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 296 (342)
+|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999998777778888999999999999988555557888899999999998875
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=5.2e-15 Score=137.86 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=96.7
Q ss_pred CCcccEEEeeccccccCccccccCCCCCceee-----ccccccccCCchhhcCccCccEEEecccccccccCccccCCCC
Q 043372 11 IPKLRILTVHANYLSGEIPSSFGNLSSLEVLS-----ATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSS 85 (342)
Q Consensus 11 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~ 85 (342)
-+++++|++..+.+... +..+.....|+.+. +..+.+. ..+..+..++.|+.|+|++|.+. .++..+..+++
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 36688888888777643 22222222333332 2233333 45667888999999999999988 67777779999
Q ss_pred CCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEccc
Q 043372 86 LSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQ 165 (342)
Q Consensus 86 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~ 165 (342)
|++|++++|.++ .+|..+. .+++|++|+|++|.+. .+|..+..+++|++|++++|.+..++..+..+++|+.|++++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 999999999998 8887775 6999999999999988 678888899999999999999887777799999999999999
Q ss_pred CCCCC
Q 043372 166 NPLGN 170 (342)
Q Consensus 166 ~~~~~ 170 (342)
|.+..
T Consensus 326 N~l~~ 330 (727)
T 4b8c_D 326 NPLEK 330 (727)
T ss_dssp SCCCS
T ss_pred CccCC
Confidence 98875
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=4.8e-13 Score=116.16 Aligned_cols=284 Identities=11% Similarity=0.012 Sum_probs=175.1
Q ss_pred cccCCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCC----------------------chhhcCccCcc
Q 043372 6 GKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRI----------------------PETLRDIKRMR 63 (342)
Q Consensus 6 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------~~~~~~l~~L~ 63 (342)
..|.+|++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +.... ..+|.++.+|+
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~ 165 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLE 165 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCC
T ss_pred hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcccCCCc
Confidence 35789999999999754 55466778888888888876543 22122 23455555555
Q ss_pred EEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCC
Q 043372 64 IIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGN 143 (342)
Q Consensus 64 ~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 143 (342)
.+.+.++. .......|..+++|+.+.+..+ ++ .++...+..+..|+.+.+..+... ..........|+.+.+...
T Consensus 166 ~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~ 240 (394)
T 4fs7_A 166 YVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS 240 (394)
T ss_dssp EEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT
T ss_pred EEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC
Confidence 55554332 2233445555555655555443 22 344444445555555554433221 1122233456666666443
Q ss_pred cCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCccc
Q 043372 144 GFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQL 223 (342)
Q Consensus 144 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 223 (342)
...-....+..+..++.+.+..+... .. ...+..+..++.+......+. ......+.+|+.+.+..+ +
T Consensus 241 ~~~i~~~~f~~~~~l~~~~~~~~~~~-i~------~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 241 FTELGKSVFYGCTDLESISIQNNKLR-IG------GSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp CCEECSSTTTTCSSCCEEEECCTTCE-EC------SCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-C
T ss_pred ceecccccccccccceeEEcCCCcce-ee------ccccccccccceeccCceeec----cccccccccccccccccc-c
Confidence 21112223677778888877654322 11 224556777777776554322 222223378999988764 4
Q ss_pred ccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccc
Q 043372 224 FGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSL 303 (342)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 303 (342)
......+|..+.+|+.+++..+ +......+|.+|.+|+.+.+..+ +...-..+|.+|.+|+.+++..+- . .+...|
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F 384 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDF 384 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGB
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-Ehhhee
Confidence 4345667889999999999765 55566778999999999999776 554556789999999999997653 2 345678
Q ss_pred cCCCCCcEE
Q 043372 304 GKCQNLISL 312 (342)
Q Consensus 304 ~~~~~L~~l 312 (342)
.+|++|+.+
T Consensus 385 ~~c~~L~~I 393 (394)
T 4fs7_A 385 EDTTKFKWI 393 (394)
T ss_dssp CTTCEEEEE
T ss_pred cCCCCCcEE
Confidence 889998875
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.9e-14 Score=109.32 Aligned_cols=125 Identities=20% Similarity=0.234 Sum_probs=98.9
Q ss_pred CCccEEEecCcccccccCccccCc-CCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEe
Q 043372 211 TRLRKLSVGNNQLFGNIPSGLRNL-VNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILD 289 (342)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 289 (342)
+++++|++++|++.. ++. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 678999999998873 343 3444 4899999999988754 5678888999999999988855445568889999999
Q ss_pred cCCcccccccCc--cccCCCCCcEEEcCCCcCccccchh----hcCccccceeeccCCC
Q 043372 290 FSANLLEGSIPS--SLGKCQNLISLNLSNNNLSGTIPTE----VIGLSSLSIYLDLSQN 342 (342)
Q Consensus 290 l~~n~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~----~~~l~~l~~~l~l~~n 342 (342)
+++|.+. .++. .+..+++|+.|++++|++. .+|.. +..++.+ ++||+++|
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L-~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV-RVLDFQKV 150 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC-SEETTEEC
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc-ceeCCCcC
Confidence 9999886 4555 7788899999999999998 45664 7888888 88888775
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=3.8e-15 Score=138.72 Aligned_cols=179 Identities=16% Similarity=0.083 Sum_probs=108.9
Q ss_pred CCCceeeccccccccCCchhhcCccCccEEE-----ecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCC
Q 043372 36 SSLEVLSATANQFVGRIPETLRDIKRMRIIA-----FGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPN 110 (342)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-----l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 110 (342)
+.++.|++..+.+... +..+.....|+.+. +..+.+. ..+..+..++.|+.|++++|.+. .+|..++ .+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCC
Confidence 5678888888877643 22232223333333 3334444 55778889999999999999998 8888877 6999
Q ss_pred CcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccE
Q 043372 111 LELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLEL 190 (342)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 190 (342)
|++|+|++|.+. .+|..+..+++|+.|++++|.+..++..+..+++|+.|++++|.+... +..+..+++|+.
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l-------p~~~~~l~~L~~ 320 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL-------PWEFGNLCNLQF 320 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC-------CSSTTSCTTCCC
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc-------ChhhhcCCCccE
Confidence 999999999998 788889999999999999999997766799999999999999988643 345788999999
Q ss_pred EEeccCCCCCCCccchhccCCCccEEEecCcccccc
Q 043372 191 LEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGN 226 (342)
Q Consensus 191 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 226 (342)
|++++|.+....+..+.........+++++|.+.+.
T Consensus 321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 999999988765555433211122244555555433
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=9.5e-12 Score=107.97 Aligned_cols=122 Identities=10% Similarity=0.090 Sum_probs=68.4
Q ss_pred CCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEec
Q 043372 211 TRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDF 290 (342)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 290 (342)
..|+.+.+...... .....+..+++|+.+.+... +......+|..+.+|+.+.+.++ +...-..+|.+|.+|+.+.+
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 45666666543221 33445566677777777532 44345556677777777777554 33233456777777777777
Q ss_pred CCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccC
Q 043372 291 SANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS 340 (342)
Q Consensus 291 ~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~ 340 (342)
..+ +.......|.+|++|+.+++.++... -.++..+..| +.+.+.
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L-~~i~i~ 386 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGL-QNLPVA 386 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCC-CEEEeC
Confidence 544 33344567777777777777776543 1345555555 555443
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.45 E-value=2.5e-11 Score=105.35 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=98.8
Q ss_pred cccCCCC-cccEEEeeccccccCccccccCCCCCceeeccccc---cccCCchhhcCccCccEEEecccccccccCcccc
Q 043372 6 GKLGSIP-KLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQ---FVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIY 81 (342)
Q Consensus 6 ~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 81 (342)
..|.++. .|+.+.+-.. ++.+...+|.+|.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ +......++.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3466774 5888888653 555667888899999999887653 55556678888888887776544 4435566778
Q ss_pred CCCCCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEE
Q 043372 82 NLSSLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREV 161 (342)
Q Consensus 82 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 161 (342)
.+.+|+.+.+... +. .++...+..+..|+.+.+..+ +.......|. ...|+.+.+...........+..+..++..
T Consensus 135 ~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-ee-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhcccccee
Confidence 8888888888653 33 555556667788888887654 2222333343 346777776554333223335566666665
Q ss_pred Eccc
Q 043372 162 SISQ 165 (342)
Q Consensus 162 ~l~~ 165 (342)
....
T Consensus 211 ~~~~ 214 (394)
T 4gt6_A 211 TSDS 214 (394)
T ss_dssp EECC
T ss_pred cccc
Confidence 5443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=6.4e-16 Score=121.04 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=72.5
Q ss_pred CCcccEEEeeccccccCccc------cccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCC
Q 043372 11 IPKLRILTVHANYLSGEIPS------SFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLS 84 (342)
Q Consensus 11 ~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 84 (342)
.+.++.++++.+.+++..+. .+..+++|++|++++|.+++ .+ .+.++++|++|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34555555555555444333 56666666666666666664 33 5666666666666666665 4454555556
Q ss_pred CCCEEeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCC-ccccCCCCccEEEccCCcCcC
Q 043372 85 SLSVFDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIP-ASISNTSNLMTLAIGGNGFSG 147 (342)
Q Consensus 85 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 147 (342)
+|++|++++|.++ .+| .+. .+++|++|++++|.+....+ ..+..+++|+++++++|.+..
T Consensus 94 ~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 94 TLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 6666666666655 333 222 35566666666665542211 234555666666666655543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.4e-12 Score=99.14 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=63.2
Q ss_pred ccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCC
Q 043372 213 LRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSA 292 (342)
Q Consensus 213 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (342)
.+.++++++.+. .++..+ .+++++|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345566665554 233332 25666666666666655555566666666666666666644444556666666666666
Q ss_pred cccccccCccccCCCCCcEEEcCCCcCccc
Q 043372 293 NLLEGSIPSSLGKCQNLISLNLSNNNLSGT 322 (342)
Q Consensus 293 n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 322 (342)
|++.+..+..+..+++|+.|++++|++.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 666644444566666666666666666543
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=3.9e-15 Score=116.54 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=49.2
Q ss_pred hhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccC
Q 043372 181 SLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQK 260 (342)
Q Consensus 181 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 260 (342)
.+..+++|++|++++|.+.. ++ .+..+ ++|++|++++|.+. .++..+..+++|++|++++|.+.+ .+ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l-~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGM-ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHH-TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccC-CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 34444555555555544433 22 33333 34555555555444 333333344455555555554442 12 2444445
Q ss_pred cceEEccCCeeeeecc-ccccCCCCccEEecCCcccc
Q 043372 261 LQGLWLNGNKFLGEIP-SSIGNLASLTILDFSANLLE 296 (342)
Q Consensus 261 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~ 296 (342)
|+.|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 5555555554442111 23444455555555555444
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.8e-12 Score=98.54 Aligned_cols=103 Identities=25% Similarity=0.263 Sum_probs=90.7
Q ss_pred CCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcC
Q 043372 236 NLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLS 315 (342)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~ 315 (342)
..+.++++++.+. .+|..+ .++++.|++++|.+.+..+..|..+++|++|++++|++.+..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4689999999988 456544 4889999999999997778889999999999999999997667778999999999999
Q ss_pred CCcCccccchhhcCccccceeeccCCC
Q 043372 316 NNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 316 ~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+|.+++..+..+..+++| ++|+|++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L-~~L~L~~N 112 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSL-THIWLLNN 112 (170)
T ss_dssp SSCCCCCCTTTTTTCTTC-CEEECCSS
T ss_pred CCccCEeCHHHhcCCCCC-CEEEeCCC
Confidence 999997666678899999 99999998
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=3.5e-12 Score=97.29 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=51.7
Q ss_pred cEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCc
Q 043372 214 RKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSAN 293 (342)
Q Consensus 214 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 293 (342)
+.++++++.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34445544443 2333221 45555555555555444445555555555555555555333333455555555555555
Q ss_pred ccccccCccccCCCCCcEEEcCCCcCc
Q 043372 294 LLEGSIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
.+.+..+..+..+++|+.|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555333333555555555555555555
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=3.6e-12 Score=97.23 Aligned_cols=103 Identities=26% Similarity=0.359 Sum_probs=89.1
Q ss_pred CCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcC
Q 043372 236 NLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLS 315 (342)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~ 315 (342)
.-+.++++++.+. .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+..|.++++|+.|+++
T Consensus 13 ~~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 13 DQTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3478999999887 5665553 899999999999997778889999999999999999996556667899999999999
Q ss_pred CCcCccccchhhcCccccceeeccCCC
Q 043372 316 NNNLSGTIPTEVIGLSSLSIYLDLSQN 342 (342)
Q Consensus 316 ~~~~~~~~~~~~~~l~~l~~~l~l~~n 342 (342)
+|.+.+..+..+..+++| ++|+|++|
T Consensus 90 ~N~l~~l~~~~~~~l~~L-~~L~L~~N 115 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSL-THIYLYNN 115 (174)
T ss_dssp SSCCCCCCTTTTTTCTTC-SEEECCSS
T ss_pred CCccceeCHHHhccccCC-CEEEeCCC
Confidence 999996555568899999 99999987
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.9e-13 Score=117.15 Aligned_cols=162 Identities=19% Similarity=0.153 Sum_probs=90.1
Q ss_pred CCCccEEEccCCcCcCCCCC-----cc-ccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccc
Q 043372 132 TSNLMTLAIGGNGFSGKVPS-----FE-NLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEA 205 (342)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~~~-----~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~ 205 (342)
.+.|+.+++++|.+...... +. ..++|+.|++++|.+.+. ........+++|+.|++++|.+.+.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-----GLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-----HHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH-----HHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 35677888888776542221 22 235788888887766431 11111223456777777777665432222
Q ss_pred hh----ccCCCccEEEecCcccccc----cCccccCcCCCCEEEcCCCcccccC----CcccccccCcceEEccCCeeee
Q 043372 206 VG----NLSTRLRKLSVGNNQLFGN----IPSGLRNLVNLELLDLGDNQFIGRI----PESIGYLQKLQGLWLNGNKFLG 273 (342)
Q Consensus 206 ~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~ 273 (342)
+. ...+.|++|++++|.+... +...+...++|++|++++|.+.... ...+...++|+.|++++|.+.+
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 22 1125677777777766432 2333355666777777777665321 3344455667777777776653
Q ss_pred e----ccccccCCCCccEEecCCcccccc
Q 043372 274 E----IPSSIGNLASLTILDFSANLLEGS 298 (342)
Q Consensus 274 ~----~~~~~~~~~~L~~L~l~~n~~~~~ 298 (342)
. +...+..+++|++|++++|.+++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 2 223334456677777777766543
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=2.3e-09 Score=92.52 Aligned_cols=302 Identities=10% Similarity=0.066 Sum_probs=151.0
Q ss_pred CCCCcccEEEeeccccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCE
Q 043372 9 GSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSV 88 (342)
Q Consensus 9 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 88 (342)
....+|+.+.+... ++.+...+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ +......+|... +|+.
T Consensus 43 ~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSE
T ss_pred ccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccc
Confidence 34455666666432 33344556666666666666543 444444556555 4555555432 332333344332 5666
Q ss_pred EeCcCCCCCCCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCC-------------Ccccc
Q 043372 89 FDFPVNQLQGSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVP-------------SFENL 155 (342)
Q Consensus 89 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~ 155 (342)
+.+..+. + .+....+. ..+++.+.+..+ +.......+..+..++...+.......... .+...
T Consensus 118 i~lp~~~-~-~i~~~~F~-~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 118 FEFPGAT-T-EIGNYIFY-NSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EECCTTC-C-EECTTTTT-TCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred ccCCCcc-c-cccccccc-cceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 6665432 2 33333332 234555544332 111233445555666665554332211000 02222
Q ss_pred CcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcC
Q 043372 156 HKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLV 235 (342)
Q Consensus 156 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 235 (342)
..+..+.+...... .....+..+..++.+.+...- .......+.. +..|+.+.+..+ +...-...+..+.
T Consensus 194 ~~~~~~~~~~~~~~-------i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~-~~~L~~i~lp~~-v~~I~~~aF~~~~ 263 (379)
T 4h09_A 194 KTGTEFTIPSTVKT-------VTAYGFSYGKNLKKITITSGV-TTLGDGAFYG-MKALDEIAIPKN-VTSIGSFLLQNCT 263 (379)
T ss_dssp CCCSEEECCTTCCE-------ECTTTTTTCSSCSEEECCTTC-CEECTTTTTT-CSSCCEEEECTT-CCEECTTTTTTCT
T ss_pred ccccccccccceeE-------Eeecccccccccceeeeccce-eEEccccccC-CccceEEEcCCC-ccEeCccccceee
Confidence 23333332221110 011233445566666654331 1111112222 256777777554 3333445666777
Q ss_pred CCCEEEcCCCcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcC
Q 043372 236 NLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLS 315 (342)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~ 315 (342)
+|+.+.+..+ +......++..+.+|+.+.+.++.+...-...|.+|.+|+.+.|..+ +.......|.+|++|+.+.+.
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 7787777654 33344556777788888888776665444567778888888888654 333445677778888888775
Q ss_pred CCcCccccchhhcCccc
Q 043372 316 NNNLSGTIPTEVIGLSS 332 (342)
Q Consensus 316 ~~~~~~~~~~~~~~l~~ 332 (342)
.+ ++.....+|.+++-
T Consensus 342 ~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 342 KS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TT-CCEECTTTTTTSSC
T ss_pred Cc-cCEEchhHhhCCCC
Confidence 54 44333455655543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=7.8e-13 Score=113.37 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=124.8
Q ss_pred cCcccEEEcccCCCCCCCCCchhhhhhhc-cCCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccc--
Q 043372 155 LHKLREVSISQNPLGNGEKDDLEFVNSLV-NTSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGL-- 231 (342)
Q Consensus 155 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-- 231 (342)
.+.++.+++++|.+...... .+...+. .++.|+.|++++|.+.+.....+....+++++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT--VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH--HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHH--HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 46799999999987652211 2233333 337999999999987654444444333689999999998864332332
Q ss_pred ---cCcCCCCEEEcCCCccccc----CCcccccccCcceEEccCCeeeee----ccccccCCCCccEEecCCcccccc--
Q 043372 232 ---RNLVNLELLDLGDNQFIGR----IPESIGYLQKLQGLWLNGNKFLGE----IPSSIGNLASLTILDFSANLLEGS-- 298 (342)
Q Consensus 232 ---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~-- 298 (342)
...++|++|++++|.+... ++..+...++|++|++++|.+.+. ++..+..+++|++|++++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 2468899999999998642 333446688999999999998643 345567778999999999998753
Q ss_pred --cCccccCCCCCcEEEcCCCcCccccchhhcCc
Q 043372 299 --IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL 330 (342)
Q Consensus 299 --~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l 330 (342)
+...+..+++|+.|++++|++.......+..+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 34455567999999999999986555555443
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=3.7e-09 Score=91.21 Aligned_cols=296 Identities=10% Similarity=0.026 Sum_probs=187.9
Q ss_pred cccCCCCCceeeccccccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCccccCCCCC
Q 043372 31 SFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLGFTLPN 110 (342)
Q Consensus 31 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 110 (342)
++....+|+.+.+... ++.....+|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ ++ .+....+. ..+
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-GTD 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-TCC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-cCC
Confidence 3555678999988754 56567778999999999999754 665666778776 6777777643 44 55665554 458
Q ss_pred CcEEEccCCccCCCCCccccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCc------hhhhhhhcc
Q 043372 111 LELLNVADNQFAGPIPASISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDD------LEFVNSLVN 184 (342)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~------~~~~~~l~~ 184 (342)
|+.+.+..+... .....|.++ ++....+..+-.......+..+..++.+.+............ .........
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred cccccCCCcccc-ccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 999998754322 333445444 566665544322212233677778887776654321100000 000112223
Q ss_pred CCcccEEEeccCCCCCCCccchhccCCCccEEEecCcccccccCccccCcCCCCEEEcCCCcccccCCcccccccCcceE
Q 043372 185 TSRLELLEISDTNCGGMLPEAVGNLSTRLRKLSVGNNQLFGNIPSGLRNLVNLELLDLGDNQFIGRIPESIGYLQKLQGL 264 (342)
Q Consensus 185 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 264 (342)
+..+..+.+...... .....+ .....++.+.+... +.......+..+..|+.+.+..+ +......++..+.+|+.+
T Consensus 193 ~~~~~~~~~~~~~~~-i~~~~f-~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-VTAYGF-SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTCCE-ECTTTT-TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccceeE-Eeeccc-ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 334444443322110 011111 22256777777554 23244556778899999999876 554666778889999999
Q ss_pred EccCCeeeeeccccccCCCCccEEecCCcccccccCccccCCCCCcEEEcCCCcCccccchhhcCccccceeeccCC
Q 043372 265 WLNGNKFLGEIPSSIGNLASLTILDFSANLLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ 341 (342)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~l~l~~ 341 (342)
.+... +...-...|.+|.+|+.+.+.++.+.......|.+|.+|+.+.+..+ ++.....+|.+|.+| +.+.+..
T Consensus 269 ~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~ip~ 342 (379)
T 4h09_A 269 NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL-STISYPK 342 (379)
T ss_dssp EECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC-CCCCCCT
T ss_pred ccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC-CEEEECC
Confidence 99654 44344567899999999999988887666789999999999999765 554456689999999 7777643
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.6e-10 Score=98.57 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=80.9
Q ss_pred cEEEeecc-ccccCccccccCCCCCceeeccc-cccccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCc
Q 043372 15 RILTVHAN-YLSGEIPSSFGNLSSLEVLSATA-NQFVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFP 92 (342)
Q Consensus 15 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~ 92 (342)
..++.+++ .++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+.+..+..|..+++|+.|+++
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34577776 6764 455 77888888888885 88887777788888888888888888887777788888888888888
Q ss_pred CCCCCCCCCccccCCCCCCcEEEccCCccCC
Q 043372 93 VNQLQGSFPSDLGFTLPNLELLNVADNQFAG 123 (342)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 123 (342)
+|.+. .+|...+..++ |++|++.+|.+..
T Consensus 89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCS-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccc-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 88887 66666654444 8888888887763
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=2.4e-10 Score=97.48 Aligned_cols=106 Identities=21% Similarity=0.142 Sum_probs=90.3
Q ss_pred cEEEecCc-ccccccCccccCcCCCCEEEcCC-CcccccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecC
Q 043372 214 RKLSVGNN-QLFGNIPSGLRNLVNLELLDLGD-NQFIGRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFS 291 (342)
Q Consensus 214 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 291 (342)
..++.+++ ++. .+|. +..+++|++|++++ |.+.+..+..+..+++|+.|+|++|++.+..+..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 676 4666 88899999999996 99987777889999999999999999998888889999999999999
Q ss_pred CcccccccCccccCCCCCcEEEcCCCcCccc
Q 043372 292 ANLLEGSIPSSLGKCQNLISLNLSNNNLSGT 322 (342)
Q Consensus 292 ~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 322 (342)
+|++.+..+..+..++ |+.|++.+|++.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999965555666555 99999999999864
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=4.8e-10 Score=95.34 Aligned_cols=162 Identities=16% Similarity=0.123 Sum_probs=78.6
Q ss_pred hhhcCccCccEEEecccccccccCccccCCCCCCEEeCcCCCCCCCCCcccc-CCCCCCcEEEccCC--ccCCC-----C
Q 043372 54 ETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPVNQLQGSFPSDLG-FTLPNLELLNVADN--QFAGP-----I 125 (342)
Q Consensus 54 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~--~~~~~-----~ 125 (342)
..+..+++|+.|.++++.-. ..+. + .+++|+.|++..+.+.......+. ..+|+|++|+|+.+ ...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34455666666666655211 1222 2 256667776665554321111111 13667777766421 11100 0
Q ss_pred Cccc--cCCCCccEEEccCCcCcCCCC-C---ccccCcccEEEcccCCCCCCCCCchhhhhhhccCCcccEEEeccCCCC
Q 043372 126 PASI--SNTSNLMTLAIGGNGFSGKVP-S---FENLHKLREVSISQNPLGNGEKDDLEFVNSLVNTSRLELLEISDTNCG 199 (342)
Q Consensus 126 ~~~~--~~~~~L~~L~l~~~~~~~~~~-~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~ 199 (342)
...+ ..+|+|+.|.+.+|.+.+... . ...+++|+.|+++.|.+.+... ..+...+..+++|+.|+++.|.++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~--~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA--RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH--HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH--HHHHhhcccCCcceEEECCCCcCC
Confidence 0111 246777777777766543111 1 1246677777777766543110 122333456677777777777655
Q ss_pred CCCccchhccCCCccEEEecCcc
Q 043372 200 GMLPEAVGNLSTRLRKLSVGNNQ 222 (342)
Q Consensus 200 ~~~~~~~~~~~~~L~~L~l~~~~ 222 (342)
+.....+... --.+++++.+.
T Consensus 321 d~~~~~l~~a--lg~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKS--LPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHH--CCSEEECCSBC
T ss_pred HHHHHHHHHH--cCCEEEecCCc
Confidence 4433333321 02345666554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=4.6e-09 Score=89.31 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=29.5
Q ss_pred ccCCCCccEEEccCCcCcCCCCCccccCcccEEEcccCCCCCCCCCchhhhhhh--ccCCcccEEEec
Q 043372 129 ISNTSNLMTLAIGGNGFSGKVPSFENLHKLREVSISQNPLGNGEKDDLEFVNSL--VNTSRLELLEIS 194 (342)
Q Consensus 129 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~l~l~ 194 (342)
+..+|+|++|.+.++.-.... .+ ..++|+.|++..+.+.. .....+ ..+|+|+.|+++
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~-~~-~~~~L~~L~L~~~~l~~------~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIG-KK-PRPNLKSLEIISGGLPD------SVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCC-SC-BCTTCSEEEEECSBCCH------HHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceec-cc-cCCCCcEEEEecCCCCh------HHHHHHHHccCCCCcEEEEe
Confidence 345566666666655211111 12 25667777776655432 222222 256666666664
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=9.9e-09 Score=76.89 Aligned_cols=92 Identities=10% Similarity=0.027 Sum_probs=54.6
Q ss_pred CCcccCCCCcccEEEeeccccccCccccccCCCCCceeeccccc-cccCCchhhcCc----cCccEEEecccc-cccccC
Q 043372 4 VPGKLGSIPKLRILTVHANYLSGEIPSSFGNLSSLEVLSATANQ-FVGRIPETLRDI----KRMRIIAFGINK-LSGEIP 77 (342)
Q Consensus 4 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-i~~~~~ 77 (342)
+|.....-.+|+.|+++++.++......+..+++|+.|+|++|. +++.....+..+ ++|++|++++|. |++..-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333457777777766665555566667777777777764 555444455543 357777776664 555444
Q ss_pred ccccCCCCCCEEeCcCCC
Q 043372 78 FSIYNLSSLSVFDFPVNQ 95 (342)
Q Consensus 78 ~~~~~l~~L~~l~l~~~~ 95 (342)
..++.+++|+.|++++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 455566666666666653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=1.5e-08 Score=77.83 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=81.8
Q ss_pred CCccEEEecCc-ccccc----cCccccCcCCCCEEEcCCCccccc----CCcccccccCcceEEccCCeeeee----ccc
Q 043372 211 TRLRKLSVGNN-QLFGN----IPSGLRNLVNLELLDLGDNQFIGR----IPESIGYLQKLQGLWLNGNKFLGE----IPS 277 (342)
Q Consensus 211 ~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~ 277 (342)
+.+++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+.+. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 68999999998 77532 344556678899999999988643 233445557899999999988743 355
Q ss_pred cccCCCCccEEec--CCcccccc----cCccccCCCCCcEEEcCCCcCc
Q 043372 278 SIGNLASLTILDF--SANLLEGS----IPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 278 ~~~~~~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
.+...++|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6677788999999 77887753 3455566788999999999876
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=1.3e-08 Score=76.23 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=53.4
Q ss_pred CCCCEEEcCCCcccccCCcccccccCcceEEccCCe-eeeeccccccC----CCCccEEecCCcc-cccccCccccCCCC
Q 043372 235 VNLELLDLGDNQFIGRIPESIGYLQKLQGLWLNGNK-FLGEIPSSIGN----LASLTILDFSANL-LEGSIPSSLGKCQN 308 (342)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~n~-~~~~~~~~~~~~~~ 308 (342)
..|+.|++++|.++......+..+++|+.|++++|. +++.....+.. +++|++|++++|. +++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666655444455667777777777774 44333333433 2467788887774 66555555667788
Q ss_pred CcEEEcCCCcC
Q 043372 309 LISLNLSNNNL 319 (342)
Q Consensus 309 L~~l~l~~~~~ 319 (342)
|+.|++++|+-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 88888888863
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=2.3e-08 Score=76.75 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=78.3
Q ss_pred hhhhhhccCCcccEEEeccC-CCCCCCc----cchhccCCCccEEEecCcccccc----cCccccCcCCCCEEEcCCCcc
Q 043372 177 EFVNSLVNTSRLELLEISDT-NCGGMLP----EAVGNLSTRLRKLSVGNNQLFGN----IPSGLRNLVNLELLDLGDNQF 247 (342)
Q Consensus 177 ~~~~~l~~~~~L~~l~l~~~-~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 247 (342)
.+...+...+.|++|++++| .+.+... ..+... +.|++|++++|.+... +...+...+.|++|++++|.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 34556677788888888887 6654322 222222 5788888888877532 334445567888888888877
Q ss_pred ccc----CCcccccccCcceEEc--cCCeeeee----ccccccCCCCccEEecCCcccc
Q 043372 248 IGR----IPESIGYLQKLQGLWL--NGNKFLGE----IPSSIGNLASLTILDFSANLLE 296 (342)
Q Consensus 248 ~~~----~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 296 (342)
... +...+...++|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 643 3345566677888888 77877643 3344556678888888888765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=6e-07 Score=72.44 Aligned_cols=108 Identities=22% Similarity=0.220 Sum_probs=70.3
Q ss_pred cCCCCcccE--EEeeccccc---cCccccccCCCCCceeeccccccccC--CchhhcCccCccEEEecccccccc-cCcc
Q 043372 8 LGSIPKLRI--LTVHANYLS---GEIPSSFGNLSSLEVLSATANQFVGR--IPETLRDIKRMRIIAFGINKLSGE-IPFS 79 (342)
Q Consensus 8 l~~~~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~~-~~~~ 79 (342)
+...+.|+. ++++.|... ........++++|++|+|++|.+++. .+..+..+++|+.|+|++|.|.+. ....
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 444555665 555555322 11122224578999999999998863 345667889999999999988754 1123
Q ss_pred ccCCCCCCEEeCcCCCCCCCCCc------cccCCCCCCcEEEc
Q 043372 80 IYNLSSLSVFDFPVNQLQGSFPS------DLGFTLPNLELLNV 116 (342)
Q Consensus 80 ~~~l~~L~~l~l~~~~~~~~~~~------~~~~~~~~L~~L~l 116 (342)
+..+ +|+.|++.+|.+.+.+|. .+...+|+|+.|+-
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3334 899999999988755552 12335888988864
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=1.2e-06 Score=70.78 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=17.8
Q ss_pred cCCCCEEEcCCCcccc--cCCcccccccCcceEEccCCeee
Q 043372 234 LVNLELLDLGDNQFIG--RIPESIGYLQKLQGLWLNGNKFL 272 (342)
Q Consensus 234 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 272 (342)
+++|+.|++++|.+.+ .++..+..+++|+.|+|++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 4455555555555443 12223334445555555555444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=8.4e-05 Score=56.72 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=71.7
Q ss_pred CCccEEEecCc-cccc----ccCccccCcCCCCEEEcCCCcccccCC----cccccccCcceEEccCCeeeee----ccc
Q 043372 211 TRLRKLSVGNN-QLFG----NIPSGLRNLVNLELLDLGDNQFIGRIP----ESIGYLQKLQGLWLNGNKFLGE----IPS 277 (342)
Q Consensus 211 ~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~ 277 (342)
+.|++|+++++ .+.. .+...+...+.|+.|++++|.+..... .++..-..|++|+|++|.+.+. +..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 57888888875 5542 244455666788888888888764332 2333446788888888888642 334
Q ss_pred cccCCCCccEEecCCcc---ccc----ccCccccCCCCCcEEEcCCCcCc
Q 043372 278 SIGNLASLTILDFSANL---LEG----SIPSSLGKCQNLISLNLSNNNLS 320 (342)
Q Consensus 278 ~~~~~~~L~~L~l~~n~---~~~----~~~~~~~~~~~L~~l~l~~~~~~ 320 (342)
.+.....|++|+|++|. +.. .+...+..-+.|+.|+++.+.+.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 55566778888887653 332 13345556678888888766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.21 E-value=8.4e-05 Score=56.72 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=66.5
Q ss_pred hhhhccCCcccEEEeccC-CCCCC----CccchhccCCCccEEEecCcccccc----cCccccCcCCCCEEEcCCCcccc
Q 043372 179 VNSLVNTSRLELLEISDT-NCGGM----LPEAVGNLSTRLRKLSVGNNQLFGN----IPSGLRNLVNLELLDLGDNQFIG 249 (342)
Q Consensus 179 ~~~l~~~~~L~~l~l~~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 249 (342)
...+..-+.|+.|+++++ .+.+. +.+.+... +.|++|++++|.+... +...+...+.|++|++++|.+..
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 334455677777777764 55432 22233333 5677778877776532 33344455777788887777754
Q ss_pred c----CCcccccccCcceEEccCCe---eee----eccccccCCCCccEEecCCcccc
Q 043372 250 R----IPESIGYLQKLQGLWLNGNK---FLG----EIPSSIGNLASLTILDFSANLLE 296 (342)
Q Consensus 250 ~----~~~~~~~~~~L~~L~l~~~~---~~~----~~~~~~~~~~~L~~L~l~~n~~~ 296 (342)
. +.+.+..-..|++|+++++. +.. .+...+...++|.+|+++.+.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2 22334444567777776542 221 13344555577777777766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.40 E-value=0.005 Score=43.65 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=36.8
Q ss_pred CEEEcCCCccc-ccCCcccccccCcceEEccCCeeeeeccccccCCCCccEEecCCcccc
Q 043372 238 ELLDLGDNQFI-GRIPESIGYLQKLQGLWLNGNKFLGEIPSSIGNLASLTILDFSANLLE 296 (342)
Q Consensus 238 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 296 (342)
..++.+++.++ ..+|..+ .++++.|+|++|.+...-+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36667776664 2344332 346778888888777444556677777888888777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.12 E-value=0.017 Score=40.91 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=28.2
Q ss_pred EEeCcCCCCC-CCCCccccCCCCCCcEEEccCCccCCCCCccccCCCCccEEEccCCcC
Q 043372 88 VFDFPVNQLQ-GSFPSDLGFTLPNLELLNVADNQFAGPIPASISNTSNLMTLAIGGNGF 145 (342)
Q Consensus 88 ~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 145 (342)
.++.+++.++ ..+|..+ .++|++|+|++|.+....+..|..+++|+.+++.+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444444442 2344332 23466666666666544444555555666666655554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.53 E-value=2.4 Score=28.01 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=27.3
Q ss_pred ccccCccccccCCCCCceeeccccccccCCchhhcCccCccEEEeccc
Q 043372 23 YLSGEIPSSFGNLSSLEVLSATANQFVGRIPETLRDIKRMRIIAFGIN 70 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 70 (342)
.++.+...+|.+|..|+.+.+..+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344445566666666666666653 33345556666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.03 E-value=3.7 Score=27.08 Aligned_cols=45 Identities=13% Similarity=-0.018 Sum_probs=23.3
Q ss_pred cccCCchhhcCccCccEEEecccccccccCccccCCCCCCEEeCcC
Q 043372 48 FVGRIPETLRDIKRMRIIAFGINKLSGEIPFSIYNLSSLSVFDFPV 93 (342)
Q Consensus 48 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~l~l~~ 93 (342)
++.+...+|.+|.+|+.+.+..+ ++.+...+|..+.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444455666666666665543 3324444555555555555543
Done!