BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043373
         (809 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q94A20|BI1L_ARATH BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1
          Length = 256

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 8/202 (3%)

Query: 426 RLEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYTHFLSPILFLIPTCKAFKKE 485
           R  FI+KV   L   LL   +  A + + PP       +    L   L ++P    +   
Sbjct: 46  RWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILL--FLCIVPFILIWPLH 103

Query: 486 ISKQKYDSTAGLLVSAVHTAFGVFWADRNLANSNGRIMLAALLTTLYILFHVSLGAVFEV 545
           I  QK+     L++ A+ T    F    + A + GRI+L AL+ TL ++   SL A    
Sbjct: 104 IYHQKH--PVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVG--SLTAYTFW 159

Query: 546 VVKDDGDLSCFRPSNYSLSMTIAFLVSFLQIF-NRGPLITAIDAGLGVLVFTMFALYDAG 604
             K   D S   P  ++ S+ I  + SF+Q+F   GP   A+  G   LVF  + +YD  
Sbjct: 160 AAKKGKDFSFLGPILFT-SLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTD 218

Query: 605 KILKRSDSDDHHKASAHLYWDL 626
            ++KR   D++  AS  LY D+
Sbjct: 219 NLIKRFTYDEYILASVALYLDI 240



 Score = 39.7 bits (91), Expect = 0.089,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 655 LALFNVAIAAFGVVLADVHIANSNGLIMLGVLISTLALFLLQISLDYALMVFNNKDLSKF 714
           LALF V+++ F V    V  A + G I+L  LI TL++    +    A   +  K    F
Sbjct: 116 LALFTVSLS-FTV---GVSCAMTEGRIVLQALILTLSV----VGSLTAYTFWAAKKGKDF 167

Query: 715 ESDINAHYSVTTSAIINNFIQVINP-GPITAAVGTGLSCIPFLVLLVSNIAMVFKGFHND 773
                  ++     ++ +FIQ+  P GP + AV  G S + F   +V +   + K F   
Sbjct: 168 SFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRF-TY 226

Query: 774 DDYVVASVHFFWGLYGLFICLIK 796
           D+Y++ASV  +  +  LF+ +++
Sbjct: 227 DEYILASVALYLDILNLFLTILR 249


>sp|P0C2X8|CDCA3_XENLA Cell division cycle-associated protein 3 OS=Xenopus laevis GN=cdca3
           PE=1 SV=1
          Length = 363

 Score = 39.3 bits (90), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 126 EKIR--IFEILMGLSEEEKRKLSEIVEEWNSGGEDGKIGELVEGLSREGKRKLCGVLKDL 183
           EK++  I E+L  L+++E+  ++E +E  N    D +   + E ++ + +  +   L++L
Sbjct: 163 EKVKSPIAEMLETLNDQEESPIAETLETMN----DQEESPIAETMNDQEESPIAETLENL 218

Query: 184 SDGDKEKITELLEGLNEKQTKKLIELVESLSEEGLKRVGKHVLESGGVESNKA 236
           +D  +  I E LE LN++    + E++++L+++    V + V+     ES +A
Sbjct: 219 NDQAESPIAETLENLNDQAESPIAEMLDTLNDQEPVAVAQSVV---STESTQA 268


>sp|Q9ZFC6|DNAK_METSS Chaperone protein DnaK OS=Methylovorus sp. (strain SS1 / DSM 11726)
           GN=dnaK PE=3 SV=1
          Length = 641

 Score = 35.4 bits (80), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 105 DRLSEEEKKKICEFAGRLSEEEKIRIFEILMGLSEEEKRKLSEIVEEWNSGGEDGKIGEL 164
           D+ + +E K   +    LSEEE  R+ E     ++E+ RKL E+V+  NS   DG +  +
Sbjct: 490 DKATGKENKITIKANSGLSEEEIKRMEEDAAAYADED-RKLRELVDARNSA--DGMVHSV 546

Query: 165 VEGLSREG-------KRKLCGVLKDLSDG----DKEKITELLEGLNEKQTKKLIELVESL 213
            + LS  G       K K+   +KD+ D     DKE I        E +T  L+E  + L
Sbjct: 547 KKSLSEHGDKLEAGEKEKIEAAIKDVEDAIKGDDKEAI--------EAKTNALMEASQKL 598

Query: 214 SEEGLKRVGKHVLESGGVE 232
            E   K   +   + GG E
Sbjct: 599 GE---KVYAEQQAQQGGAE 614


>sp|Q5RH01|CNDH2_DANRE Condensin-2 complex subunit H2 OS=Danio rerio GN=ncaph2 PE=2 SV=1
          Length = 592

 Score = 35.0 bits (79), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 58/138 (42%), Gaps = 13/138 (9%)

Query: 55  NFPEKIIATTRKRGIRPPNIKQSEVAGAAAGAGEDEEEEEEKKESGEPVEDRLSEEEKKK 114
           +F + +    R   +  P   Q E   AAA  G D EE +   E   P+ED   E E  +
Sbjct: 197 HFLKGVAEVQRDFSVHLPEPLQIEGEAAAANGGYD-EEVDGGAEVLPPLEDHGMEVESDE 255

Query: 115 ICEFAGRLSEEEKIRIFEILMGLSEEEKRKLSEIVEEWN------SGGED-----GKIGE 163
             E     SE   +R    +  +SEE K +L E V+ W       + GED     GK  +
Sbjct: 256 WVERHEAPSEGRMLRPRPAVQPVSEEPK-QLKETVDPWKLHDPYATFGEDKPLKAGKCYK 314

Query: 164 LVEGLSREGKRKLCGVLK 181
           +  GL   GKRK  G  K
Sbjct: 315 VPAGLDESGKRKRKGPSK 332


>sp|Q895K9|RRF_CLOTE Ribosome-recycling factor OS=Clostridium tetani (strain
           Massachusetts / E88) GN=frr PE=3 SV=1
          Length = 183

 Score = 35.0 bits (79), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query: 133 ILMGLSEEEKRKLSEIVEEWNSGGEDGKIGELVEGLSREGKRKLCGVLKDLSDGDKEKIT 192
           I+  L+EE +R + + V+++   GED KI   +  + R+G  K+  +  D+S+ D +K  
Sbjct: 101 IIPELTEETRRNIVKTVKKY---GEDTKIA--IRSVRRDGNDKIKDLKSDMSEDDIKKAE 155

Query: 193 ELLEGLNEKQTKKLIELVE 211
           E ++ + +   KK+ E+++
Sbjct: 156 EEIQKITDNYVKKVDEMID 174


>sp|O18759|APOA1_TUPBE Apolipoprotein A-I OS=Tupaia belangeri GN=APOA1 PE=2 SV=1
          Length = 265

 Score = 34.7 bits (78), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 332 KKKINKDSVEGSRDGETVKIKKILKRWGLSEKDMKPALELVDGLSEGSRVNSRKFLESLE 391
           +++INKD +E  R      + +I K+W   ++D++   + V+ LS   R  +R+ L  L+
Sbjct: 106 RREINKD-LEDVRQKTQPFLDEIQKKW---QEDLERYRQKVEPLSAQLREGARQKLMELQ 161

Query: 392 EEATKI-LTLKDLANCF---LNKDLEKYIKKASQNLSPRLEFIKK 432
           E+ T +   L+D    +   L   L  Y ++  + L  RLE IK+
Sbjct: 162 EQVTPLGEDLRDSVRAYADTLRTQLAPYSEQMRKTLGARLEAIKE 206


>sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein 11 OS=Homo sapiens GN=TRIP11
           PE=1 SV=3
          Length = 1979

 Score = 34.3 bits (77), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 25/138 (18%)

Query: 188 KEKITELLEGLNEKQ------TKKLIELVESL--SEEGLKRVGKHVLESGGVESNKAFEL 239
           ++K+  L++ LN+ Q       K+ +EL E +  +EE L R+   +++S   +SN  F+ 
Sbjct: 582 EDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFK- 640

Query: 240 LLIDGLIKEDRKRVRNFACSVAIFKILLCLREIVKVDDGISKEELV---TDIRHFWEG-- 294
              D L+KE    VRN   +++  + L    + V  D  +  E+LV    D+RH  E   
Sbjct: 641 ---DTLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECL 697

Query: 295 --------ENNTIAKFLK 304
                   E NTI + LK
Sbjct: 698 AGNNQLSLEKNTIVETLK 715


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 295,973,630
Number of Sequences: 539616
Number of extensions: 13116532
Number of successful extensions: 86845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 791
Number of HSP's that attempted gapping in prelim test: 78935
Number of HSP's gapped (non-prelim): 5067
length of query: 809
length of database: 191,569,459
effective HSP length: 126
effective length of query: 683
effective length of database: 123,577,843
effective search space: 84403666769
effective search space used: 84403666769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)