Query 043373
Match_columns 809
No_of_seqs 169 out of 1041
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2322 N-methyl-D-aspartate r 100.0 5.6E-41 1.2E-45 337.8 16.7 199 419-625 37-237 (237)
2 PRK10447 HflBKC-binding inner 100.0 4.9E-38 1.1E-42 313.9 21.7 191 425-635 16-211 (219)
3 cd06181 BI-1-like BAX inhibito 100.0 2.6E-36 5.7E-41 292.1 22.5 199 425-635 1-207 (212)
4 COG0670 Integral membrane prot 100.0 3.5E-34 7.6E-39 288.2 20.8 199 423-635 17-224 (233)
5 PF01027 Bax1-I: Inhibitor of 100.0 1.1E-31 2.3E-36 254.8 22.2 197 427-635 1-203 (205)
6 KOG1630 Growth hormone-induced 100.0 6.8E-29 1.5E-33 253.6 13.9 270 341-633 37-325 (336)
7 KOG1629 Bax-mediated apoptosis 99.9 7.5E-24 1.6E-28 210.8 16.1 194 421-634 19-217 (235)
8 PF12811 BaxI_1: Bax inhibitor 98.3 0.00014 3E-09 76.8 21.1 128 501-635 118-266 (274)
9 COG4760 Predicted membrane pro 95.8 0.69 1.5E-05 48.7 17.5 193 427-635 52-268 (276)
10 KOG1162 Predicted small molecu 70.2 2.1E+02 0.0045 34.7 17.2 45 286-330 56-100 (617)
11 COG5500 Predicted integral mem 69.0 1.4 3.1E-05 43.5 -0.2 55 734-803 51-105 (159)
12 TIGR01129 secD protein-export 64.9 1.5E+02 0.0033 33.4 14.2 60 390-452 210-269 (397)
13 PF05884 ZYG-11_interact: Inte 63.1 2.5E+02 0.0055 31.4 17.4 85 430-518 102-188 (299)
14 PF05823 Gp-FAR-1: Nematode fa 61.8 3.1 6.7E-05 41.0 0.5 36 204-239 112-147 (154)
15 PF05297 Herpes_LMP1: Herpesvi 61.6 2.6 5.7E-05 46.3 0.0 52 550-601 131-182 (381)
16 PRK05812 secD preprotein trans 61.3 1.9E+02 0.004 34.0 14.4 58 390-451 295-353 (498)
17 PRK05771 V-type ATP synthase s 61.0 2.7E+02 0.0058 33.0 15.8 335 311-697 214-601 (646)
18 KOG3488 Dolichol phosphate-man 57.3 41 0.00088 30.8 6.6 51 584-634 9-71 (81)
19 PF11744 ALMT: Aluminium activ 56.7 74 0.0016 36.3 10.1 8 438-445 16-23 (406)
20 TIGR00400 mgtE Mg2+ transporte 56.4 3.5E+02 0.0075 30.7 20.0 124 129-290 34-159 (449)
21 PRK10245 adrA diguanylate cycl 56.4 3.1E+02 0.0066 30.1 16.1 20 428-447 31-50 (366)
22 PF11304 DUF3106: Protein of u 55.2 17 0.00038 34.0 4.2 11 135-145 93-103 (107)
23 COG5124 Protein predicted to b 53.1 17 0.00038 37.9 4.1 78 275-353 53-130 (209)
24 PF05884 ZYG-11_interact: Inte 52.1 1.9E+02 0.0042 32.2 11.9 62 621-690 167-228 (299)
25 PF09586 YfhO: Bacterial membr 51.3 5.1E+02 0.011 31.1 19.3 23 626-649 320-342 (843)
26 PF06123 CreD: Inner membrane 50.0 2.2E+02 0.0047 33.0 12.4 36 571-606 391-426 (430)
27 PF13965 SID-1_RNA_chan: dsRNA 48.7 5.5E+02 0.012 30.8 16.6 27 436-462 318-344 (570)
28 PF06027 DUF914: Eukaryotic pr 46.9 4.6E+02 0.0099 29.4 15.2 116 506-629 90-212 (334)
29 PF15224 SCRG1: Scrapie-respon 46.7 14 0.00031 33.3 2.1 32 266-297 6-45 (78)
30 PRK13024 bifunctional preprote 46.5 6.2E+02 0.014 31.2 16.1 32 419-450 254-285 (755)
31 PF11909 NdhN: NADH-quinone ox 45.1 21 0.00045 36.1 3.2 49 28-85 34-83 (154)
32 PF09925 DUF2157: Predicted me 43.4 3.1E+02 0.0067 26.4 11.6 26 428-453 30-55 (145)
33 PF05297 Herpes_LMP1: Herpesvi 41.3 8.8 0.00019 42.4 0.0 23 619-645 143-165 (381)
34 COG1289 Predicted membrane pro 41.0 2.2E+02 0.0048 33.8 11.1 27 580-606 479-505 (674)
35 PRK01061 Na(+)-translocating N 38.6 3.4E+02 0.0073 29.6 11.0 18 432-449 41-58 (244)
36 COG4129 Predicted membrane pro 38.6 5.8E+02 0.013 28.6 13.2 29 689-717 266-294 (332)
37 PRK10555 aminoglycoside/multid 38.1 1.6E+02 0.0035 36.9 9.8 18 278-295 738-755 (1037)
38 TIGR01806 CM_mono2 chorismate 37.5 49 0.0011 31.3 4.3 64 93-159 24-90 (114)
39 PF11304 DUF3106: Protein of u 36.9 56 0.0012 30.7 4.5 91 105-208 3-105 (107)
40 PRK14726 bifunctional preprote 36.6 8.9E+02 0.019 30.7 15.5 59 390-452 334-393 (855)
41 PF04632 FUSC: Fusaric acid re 36.4 5.4E+02 0.012 29.7 13.0 11 616-626 469-479 (650)
42 PRK12911 bifunctional preprote 36.3 7.6E+02 0.016 33.0 15.0 26 213-238 624-650 (1403)
43 PRK11715 inner membrane protei 36.1 4.3E+02 0.0094 30.7 12.1 36 571-606 397-432 (436)
44 PF06570 DUF1129: Protein of u 35.5 4.4E+02 0.0094 26.9 10.9 15 585-599 181-195 (206)
45 TIGR03060 PS_II_psb29 photosys 34.7 2.9E+02 0.0063 29.5 9.7 50 120-172 66-118 (214)
46 PF13945 NST1: Salt tolerance 33.9 32 0.0007 35.7 2.6 23 125-147 102-124 (190)
47 COG4657 RnfA Predicted NADH:ub 33.4 2.3E+02 0.0051 29.7 8.5 15 487-503 92-106 (193)
48 smart00005 DEATH DEATH domain, 32.6 86 0.0019 26.9 4.7 64 110-175 3-80 (88)
49 cd08307 Death_Pelle Death doma 32.5 78 0.0017 29.7 4.6 77 107-187 6-93 (97)
50 TIGR01940 nqrE NADH:ubiquinone 32.1 5.9E+02 0.013 26.9 11.3 29 432-460 33-61 (200)
51 PF14362 DUF4407: Domain of un 31.9 2.9E+02 0.0063 29.4 9.3 22 431-452 12-33 (301)
52 PF04018 DUF368: Domain of unk 31.8 7E+02 0.015 27.1 14.1 23 427-449 46-68 (257)
53 PRK12456 Na(+)-translocating N 30.7 5.5E+02 0.012 27.1 10.8 19 432-450 35-53 (199)
54 TIGR02865 spore_II_E stage II 30.2 6.6E+02 0.014 31.0 12.9 48 548-596 143-190 (764)
55 PF12805 FUSC-like: FUSC-like 29.9 3.6E+02 0.0079 28.5 9.6 12 683-694 211-222 (284)
56 PF08127 Propeptide_C1: Peptid 29.4 22 0.00048 28.6 0.5 36 147-182 4-39 (41)
57 COG4243 Predicted membrane pro 28.9 2.4E+02 0.0052 28.9 7.6 37 585-631 101-137 (156)
58 KOG3103 Rab GTPase interacting 28.2 1.6E+02 0.0034 32.2 6.5 58 526-590 148-206 (249)
59 MTH00145 CYTB cytochrome b; Pr 28.0 1E+02 0.0022 34.8 5.5 43 623-671 89-136 (379)
60 COG5006 rhtA Threonine/homoser 27.7 4.4E+02 0.0096 29.4 9.8 25 581-606 146-170 (292)
61 PF06123 CreD: Inner membrane 27.2 4.1E+02 0.0088 30.9 10.0 11 434-444 300-310 (430)
62 PF13867 SAP30_Sin3_bdg: Sin3 27.2 35 0.00075 28.5 1.3 29 277-305 19-51 (53)
63 PLN00047 photosystem II biogen 27.0 1.2E+02 0.0025 33.6 5.5 59 120-183 117-178 (283)
64 PRK02830 Na(+)-translocating N 26.9 5.9E+02 0.013 26.9 10.3 19 432-450 34-52 (202)
65 MTH00224 CYTB cytochrome b; Pr 26.3 1E+02 0.0023 34.8 5.1 43 623-671 89-136 (379)
66 PTZ00359 hypothetical protein; 26.0 1.2E+03 0.025 27.7 13.7 55 549-605 141-205 (443)
67 KOG1762 60s acidic ribosomal p 25.9 59 0.0013 31.7 2.7 51 53-105 53-107 (114)
68 cd08796 Death_IRAK-M Death dom 25.5 1.5E+02 0.0034 27.5 5.2 66 106-173 5-81 (89)
69 TIGR01943 rnfA electron transp 25.4 6.2E+02 0.013 26.5 10.0 19 431-449 32-50 (190)
70 COG4956 Integral membrane prot 24.6 6.1E+02 0.013 29.1 10.3 25 490-516 75-99 (356)
71 PRK03735 cytochrome b6; Provis 24.5 1.5E+02 0.0033 31.3 5.6 49 617-671 97-148 (223)
72 TIGR02865 spore_II_E stage II 24.3 1.4E+03 0.031 28.2 14.7 15 749-763 506-520 (764)
73 PF02109 DAD: DAD family; Int 23.9 1.5E+02 0.0033 28.8 5.0 53 574-628 47-109 (112)
74 PF03323 GerA: Bacillus/Clostr 23.4 4E+02 0.0086 31.0 9.1 15 441-455 288-302 (470)
75 PF09775 Keratin_assoc: Kerati 23.3 3.9E+02 0.0084 26.9 7.7 18 591-608 96-113 (131)
76 PRK11715 inner membrane protei 23.0 6.2E+02 0.013 29.5 10.4 12 434-445 306-317 (436)
77 COG4393 Predicted membrane pro 22.8 1.2E+03 0.027 27.0 15.0 49 432-480 30-78 (405)
78 COG1033 Predicted exporters of 22.7 1.6E+03 0.034 28.1 19.0 55 588-645 386-440 (727)
79 PF11961 DUF3475: Domain of un 22.6 54 0.0012 28.5 1.6 30 203-232 10-39 (57)
80 PF14851 FAM176: FAM176 family 22.3 77 0.0017 32.1 2.9 12 148-159 132-143 (153)
81 COG1283 NptA Na+/phosphate sym 22.1 1.9E+02 0.0041 34.5 6.3 114 136-262 393-527 (533)
82 PRK10447 HflBKC-binding inner 22.0 9.6E+02 0.021 25.4 12.7 66 564-631 84-155 (219)
83 TIGR00426 competence protein C 21.7 1.9E+02 0.0041 24.4 4.7 61 181-258 8-68 (69)
84 MTH00053 CYTB cytochrome b; Pr 21.6 2.6E+02 0.0056 31.8 7.0 40 625-670 91-135 (381)
85 PRK15035 cytochrome bd-II oxid 21.4 1.5E+03 0.032 27.3 14.6 50 522-577 187-236 (514)
86 CHL00070 petB cytochrome b6 21.4 2.6E+02 0.0056 29.5 6.6 99 556-670 36-139 (215)
87 PF00531 Death: Death domain; 21.3 68 0.0015 26.9 2.0 35 143-177 41-76 (83)
88 TIGR01667 YCCS_YHJK integral m 20.7 1.2E+03 0.027 28.5 12.7 131 437-599 389-523 (701)
89 TIGR00774 NhaB Na+/H+ antiport 20.6 1.1E+03 0.024 28.5 11.8 36 564-599 132-167 (515)
90 MTH00022 CYTB cytochrome b; Va 20.4 3.1E+02 0.0066 31.1 7.3 39 626-670 90-133 (379)
91 PRK13023 bifunctional preprote 20.0 1.8E+03 0.039 27.8 15.8 51 390-444 240-291 (758)
No 1
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-41 Score=337.81 Aligned_cols=199 Identities=23% Similarity=0.315 Sum_probs=181.2
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhHHHHHHHHHHHHHhhh-hchhhhhcccchhhHH
Q 043373 419 ASQNLSPRLEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYTHFLSPILFLIPTCKA-FKKEISKQKYDSTAGL 497 (809)
Q Consensus 419 as~~~sIR~gFIRKVYgILALQLLITAAVAal~~fspp~~~FL~~NpWL~IvsLILLIaL~~a-fsk~i~RRK~PsNAgL 497 (809)
+++++++|++|+||||+++++||++|++++++++++++++.|+.+|+|..++.++..+..+.. .|+...|||+|.| +
T Consensus 37 ~~~~~~iR~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c~~~~r~k~P~N--~ 114 (237)
T KOG2322|consen 37 AFCDQSIRWGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLACCEGLRRKSPVN--L 114 (237)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHccCcccccCcHH--H
Confidence 678899999999999999999999999999999999999999999998655555554444332 3567789999999 9
Q ss_pred HHHHHHHHHHHHHHhHHhhccChhHHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHH-HHH
Q 043373 498 LVSAVHTAFGVFWADRNLANSNGRIMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSF-LQI 576 (809)
Q Consensus 498 ILL~LFT~~mGvTLG~I~afYdpsIVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASL-INI 576 (809)
++|++||+++++++|..+++|++.+|++|+.+|++++ +|+++|++ |||+|||.+|+++++ .+++++++|+ ..+
T Consensus 115 ilL~iFT~a~s~~~g~~~a~~~~~~VL~Al~IT~~V~--~slt~~t~---qtK~DFt~~~~~l~~-~l~vl~~~g~I~~~ 188 (237)
T KOG2322|consen 115 ILLGIFTLAEAFMTGLVTAFYDAKVVLLALIITTVVV--LSLTLFTL---QTKYDFTSLGGFLFA-LLIVLLLFGLIFLF 188 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhe--eeEEEEEE---eeccchhhhhhHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99997765 889999999999999 8899999994 455
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 043373 577 FNRGPLITAIDAGLGVLVFTMFALYDAGKILKRSDSDDHHKASAHLYWD 625 (809)
Q Consensus 577 F~~S~lLsLIIS~LGVLVFSGYIAYDTQrIIkrySpDDYI~AALSLYLD 625 (809)
|+.+++++++|+++|+++|++|++||||++|++++|||||+||++||+|
T Consensus 189 f~~~~~~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~aA~~lYlD 237 (237)
T KOG2322|consen 189 FPYGPILVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIFAALNLYLD 237 (237)
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHHHHHHhhcC
Confidence 6899999999999999999999999999999999999999999999998
No 2
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=313.88 Aligned_cols=191 Identities=13% Similarity=0.116 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhH-HHHHHHHHHHHHhhhhchhhhhcccchhhHHHHHHHH
Q 043373 425 PRLEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYT-HFLSPILFLIPTCKAFKKEISKQKYDSTAGLLVSAVH 503 (809)
Q Consensus 425 IR~gFIRKVYgILALQLLITAAVAal~~fspp~~~FL~~NpW-L~IvsLILLIaL~~afsk~i~RRK~PsNAgLILL~LF 503 (809)
.+++|+||||++++++++.|++++++.++.+. ...+.+ .+++.+++++..+ .++++|.| ++++++|
T Consensus 16 ~~~~~Lr~vY~lLa~tl~~aa~ga~v~~~~~~----~~~~~~~~~~~~~gl~~~~~-------~~~~~~~~--~~llf~f 82 (219)
T PRK10447 16 STHKVLRNTYFLLSLTLAFSAITATASTVLML----PSPGLILTLVGMYGLMFLTY-------KTANKPTG--ILSAFAF 82 (219)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHH-------HHHcCCHH--HHHHHHH
Confidence 47899999999999999999999987653211 000111 1233333333222 24678988 9999999
Q ss_pred HHHHHHHHhHHhhcc----ChhHHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHHHhcc
Q 043373 504 TAFGVFWADRNLANS----NGRIMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQIFNR 579 (809)
Q Consensus 504 T~~mGvTLG~I~afY----dpsIVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLINIF~~ 579 (809)
|+++|+++|+++.+| ++.+|++|+++|+++| +++++|++ +||+||+++|++|++ +++++++++++|+|++
T Consensus 83 T~~~G~~lg~i~~~y~~~~~~~iV~~A~~~Ta~iF--~~ls~~a~---~tk~Dfs~lg~~L~~-~l~~li~~~l~~~F~~ 156 (219)
T PRK10447 83 TGFLGYILGPILNTYLSAGMGDVIALALGGTALVF--FCCSAYVL---TTRKDMSFLGGMLMA-GIVVVLIGMVANIFLQ 156 (219)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH--HHHHHHHH---HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999876 4689999999999999 89998875 899999999999999 9999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhc
Q 043373 580 GPLITAIDAGLGVLVFTMFALYDAGKILKRSDSDDHHKASAHLYWDLSAPTLWCSH 635 (809)
Q Consensus 580 S~lLsLIIS~LGVLVFSGYIAYDTQrIIkrySpDDYI~AALSLYLDFINLFLyIL~ 635 (809)
++.++++++++|+++||+|++||||+|+++ .+||||.||++||+||||||+++|+
T Consensus 157 s~~~~~~~s~~g~llfsgyilyDTq~Ii~~-g~~dyi~aAl~LYlDiinlFl~lL~ 211 (219)
T PRK10447 157 LPALHLAISAVFILISSGAILFETSNIIHG-GETNYIRATVSLYVSLYNIFVSLLS 211 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 6899999999999999999999987
No 3
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=100.00 E-value=2.6e-36 Score=292.14 Aligned_cols=199 Identities=22% Similarity=0.208 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhHHH----HHHHHHHHHHhhhhchhhhhcccchhhHHHHH
Q 043373 425 PRLEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYTHF----LSPILFLIPTCKAFKKEISKQKYDSTAGLLVS 500 (809)
Q Consensus 425 IR~gFIRKVYgILALQLLITAAVAal~~fspp~~~FL~~NpWL~----IvsLILLIaL~~afsk~i~RRK~PsNAgLILL 500 (809)
.|++|+||||++|++|+++|+++++...+.++.+. +..++|.. ++++++.+.+++ .+..++++|.| ++++
T Consensus 1 ~~~~fl~kVY~~l~~~l~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~---~~~~~~~~~~~--~~ll 74 (212)
T cd06181 1 IRRGFLRKVYGLLALQLLVTALVAYLGMFSPPLRN-VLSNTPLGWLLLLAFLGLVILLFC---CRIKRRSSPAN--LILL 74 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhccHHHHHHHHHHHHHHHHHHH---HHHhccCHHHH--HHHH
Confidence 37899999999999999999999999888887766 33344322 233333333332 35567788988 9999
Q ss_pred HHHHHHHHHHHhHHhhccChhHHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHHHhcch
Q 043373 501 AVHTAFGVFWADRNLANSNGRIMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQIFNRG 580 (809)
Q Consensus 501 ~LFT~~mGvTLG~I~afYdpsIVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLINIF~~S 580 (809)
++||+++|+++++++.++++..|.+|+++|+++| +++++|++ +||+|++++|+++++ +++++++.+++++|.++
T Consensus 75 ~~ft~~~g~~l~~~~~~~~~~~i~~A~~~T~~if--~~l~l~a~---~tk~d~~~~g~~l~~-~~~~l~~~~l~~~f~~~ 148 (212)
T cd06181 75 FLFTALMGVTLGPILSVYTAASVLQAFGITAAVF--GGLSLYAL---TTKRDFSFLGGFLFM-GLIVLIVASLVNIFLQS 148 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHH---hccccHHhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999 88887766 799999999999999 99999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCchhHHHHHHHHHHHHHHHHHHhc
Q 043373 581 PLITAIDAGLGVLVFTMFALYDAGKILKRS----DSDDHHKASAHLYWDLSAPTLWCSH 635 (809)
Q Consensus 581 ~lLsLIIS~LGVLVFSGYIAYDTQrIIkry----SpDDYI~AALSLYLDFINLFLyIL~ 635 (809)
+..+++++++|+++|++|++||||+|+++. ++|||+.||++||+|++|+|+++|+
T Consensus 149 ~~~~~~~~~~g~~lf~~~l~~Dtq~i~~~~~~~~~~~d~i~~al~LylDiinlF~~iL~ 207 (212)
T cd06181 149 PALQLAISALGVLLFSGYILYDTQLIIGGYRLYLSPDDYILAALSLYLDIINLFLSLLR 207 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998764 4899999999999999999999986
No 4
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=100.00 E-value=3.5e-34 Score=288.16 Aligned_cols=199 Identities=18% Similarity=0.103 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhH----HHHHHHHHHHHHhhhhchhhhhcccchhhHHH
Q 043373 423 LSPRLEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYT----HFLSPILFLIPTCKAFKKEISKQKYDSTAGLL 498 (809)
Q Consensus 423 ~sIR~gFIRKVYgILALQLLITAAVAal~~fspp~~~FL~~NpW----L~IvsLILLIaL~~afsk~i~RRK~PsNAgLI 498 (809)
+..+++|++|||.+|+++|++|+++++...+.++..+.. .+++ +.++++..++... .+ .+++.|.+ +.
T Consensus 17 ~~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~~~~~~~~~-~~~~~~~vl~~a~l~~~~~~~----~~-~~~s~~~~--~~ 88 (233)
T COG0670 17 DLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGLL-SLSPPGFVLIIAGLAGVFFLS----RK-INKSSPTA--LI 88 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHH----HH-hccCcchH--HH
Confidence 468889999999999999999999988765544433321 2222 2222333222221 11 12255655 89
Q ss_pred HHHHHHHHHHHHHhHHhhccChhH----HHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHH
Q 043373 499 VSAVHTAFGVFWADRNLANSNGRI----MLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFL 574 (809)
Q Consensus 499 LL~LFT~~mGvTLG~I~afYdpsI----VI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLI 574 (809)
++++||.++|++++++..+|.+.. |.+||++|+++| +++++|++ +||+|++++|+++++ +++++++++++
T Consensus 89 ~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F--~~ls~~g~---~tk~Dls~l~~~l~~-aligLiiasvv 162 (233)
T COG0670 89 LFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVF--GALSLYGY---TTKRDLSSLGSFLFM-ALIGLIIASLV 162 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--HHHHHHHH---HHhhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999998886655 999999999999 88888776 799999999999999 99999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHhc
Q 043373 575 QIFNRGPLITAIDAGLGVLVFTMFALYDAGKILKR-SDSDDHHKASAHLYWDLSAPTLWCSH 635 (809)
Q Consensus 575 NIF~~S~lLsLIIS~LGVLVFSGYIAYDTQrIIkr-ySpDDYI~AALSLYLDFINLFLyIL~ 635 (809)
|+|.+|+.++++||++|+++|++|++||||+|+++ ..++.++.+|++||+||||+|+++|+
T Consensus 163 n~Fl~s~~l~~~IS~lgvlifsgli~yDtq~I~~~~~~~~~~i~~AlsLYldfiNlF~~LL~ 224 (233)
T COG0670 163 NIFLGSSALHLAISVLGVLIFSGLIAYDTQNIKRMEGGERLAIMGALSLYLDFINLFLSLLR 224 (233)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 57788999999999999999999964
No 5
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=100.00 E-value=1.1e-31 Score=254.83 Aligned_cols=197 Identities=18% Similarity=0.244 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhH----HHHHHHHHHHHHhhhhchhhhhcccchhhHHHHHHH
Q 043373 427 LEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYT----HFLSPILFLIPTCKAFKKEISKQKYDSTAGLLVSAV 502 (809)
Q Consensus 427 ~gFIRKVYgILALQLLITAAVAal~~fspp~~~FL~~NpW----L~IvsLILLIaL~~afsk~i~RRK~PsNAgLILL~L 502 (809)
++|++|||.++++|+++|++.++.....| .+...++| ..+++++..+..++ ....++++|.+.++.++.+
T Consensus 1 ~~fl~kvy~~l~~~l~it~~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~~i~~~~---~~~~~~~~~~~~~~~~~~~ 74 (205)
T PF01027_consen 1 RQFLRKVYGLLALQLAITALGAFLVLASP---LFLSQHFPLSWVSLIVSLVLLIFLYI---LFNRRRRFPSNVALILLFI 74 (205)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhccHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhHHHHHHHH
Confidence 48999999999999999977777665555 33333333 23334444322222 1222344565555899999
Q ss_pred HHHHHHHHHhHHhhccChhHHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHHHhcchhH
Q 043373 503 HTAFGVFWADRNLANSNGRIMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQIFNRGPL 582 (809)
Q Consensus 503 FT~~mGvTLG~I~afYdpsIVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLINIF~~S~l 582 (809)
||+.+|+++++++.++++.++.+|+++|+++| ++++++++ +||+|++.+++++++ +++++++++++++|.+++.
T Consensus 75 ~t~~~g~~~~~i~~~~~~~~v~~a~~~T~~if--~~l~~~a~---~~~~d~~~~~~~l~~-~l~~l~i~~l~~~f~~~~~ 148 (205)
T PF01027_consen 75 FTLLEGLLLGPISSFYDPSIVLQAFLLTAAIF--IALTLYAF---FTKRDFTRWGGILFI-GLIGLIIFGLVSIFLPSSP 148 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHhhhhcccchHHHH-HHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999999999999999 89998776 789999999999999 9999999999999977889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchh-HHHHHHHHHHHHHHHHHHhc
Q 043373 583 ITAIDAGLGVLVFTMFALYDAGKILK-RSDSDDH-HKASAHLYWDLSAPTLWCSH 635 (809)
Q Consensus 583 LsLIIS~LGVLVFSGYIAYDTQrIIk-rySpDDY-I~AALSLYLDFINLFLyIL~ 635 (809)
...+++++|+++|++|++||||+|++ +.++||| +.+|++||+|++|+|+++|+
T Consensus 149 ~~~~is~~~~~lf~~~l~~Dt~~i~~~~~~~~~~~i~~Al~Ly~d~i~lF~~iL~ 203 (205)
T PF01027_consen 149 LYLLISYIGILLFSLYLVYDTQRIIRRYFSPDDYAIIAALSLYLDIINLFLRILR 203 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986 4567887 99999999999999999986
No 6
>KOG1630 consensus Growth hormone-induced protein and related proteins [Signal transduction mechanisms]
Probab=99.96 E-value=6.8e-29 Score=253.60 Aligned_cols=270 Identities=15% Similarity=0.102 Sum_probs=217.1
Q ss_pred cccCCcchhhHHHHHHhhcccccccCcccccccccccCcccCCchhhhhhHHHhhhhhccccccccccCcchhhh---Hh
Q 043373 341 EGSRDGETVKIKKILKRWGLSEKDMKPALELVDGLSEGSRVNSRKFLESLEEEATKILTLKDLANCFLNKDLEKY---IK 417 (809)
Q Consensus 341 ~~~~~~~~~~~~~~~~r~~l~e~~~~Pa~~~~~~~~~g~~~~s~~~~es~~~eat~~~~lk~~a~cf~~~dfsky---I~ 417 (809)
.+||+-....+++.-|-.+|||+.|.|.+|++|.||+|+.+|. ++.++ +++|||+.+.+++ +.
T Consensus 37 r~s~~r~r~~v~~~~rgpsLKErllgP~s~k~f~mGk~a~AGa------------a~~Gl--gaLcYYGlgls~e~si~d 102 (336)
T KOG1630|consen 37 RESRVRTRIGVRRGRRGPSLKERLLGPPSEKAFSMGKGAAAGA------------AAVGL--GALCYYGLGLSNEISIID 102 (336)
T ss_pred chhhhcccccccccCcCccHHHHhcCCCcccchhcchhhhccc------------hhhhh--hHHHHhcccccccchHHH
Confidence 3455666666677777789999999999999999999999999 99999 9999999999888 67
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhH-HHHHHHHHHHHHhhhhchhhhhccc-chhh
Q 043373 418 KASQNLSPRLEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYT-HFLSPILFLIPTCKAFKKEISKQKY-DSTA 495 (809)
Q Consensus 418 ~as~~~sIR~gFIRKVYgILALQLLITAAVAal~~fspp~~~FL~~NpW-L~IvsLILLIaL~~afsk~i~RRK~-PsNA 495 (809)
++..||+..++.|..+|..++.++.+|++.+.....++.+.++..+..| ..++.+.+++..-.. .+...... |...
T Consensus 103 ks~iWPqyVrdRI~sTYay~~gS~~lTA~savA~~rs~~lm~l~~rgg~va~~~tla~mi~sG~l--arsi~Yq~g~gaK 180 (336)
T KOG1630|consen 103 KSVIWPQYVRDRIHSTYAYLAGSCGLTAASAVAISRSPALMNLMMRGGWVAIGVTLAAMIGSGML--ARSIEYQPGPGAK 180 (336)
T ss_pred hccccHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHhcchh--hhcccCCCCccHH
Confidence 7889999999999999999999999999998888888888888888777 455666666654331 11111111 2222
Q ss_pred HHHHHHHHHHHHHHHHhHHhhccChhHHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHH
Q 043373 496 GLLVSAVHTAFGVFWADRNLANSNGRIMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQ 575 (809)
Q Consensus 496 gLILL~LFT~~mGvTLG~I~afYdpsIVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLIN 575 (809)
-+.+.+.+..+|..++++|.+- +.++..|.+.|++|+ .+|+..+.+|+.-| |..+|+.|-+ |+-++++.++.+
T Consensus 181 -hLAW~lHc~vlGAV~APlc~lg-GPiLtrAa~YTaGIV--GgLStvA~cAPSeK--FL~MggPLai-GlGvVFvssl~s 253 (336)
T KOG1630|consen 181 -HLAWLLHCGVLGAVVAPLCFLG-GPILTRAAWYTAGIV--GGLSTVAACAPSEK--FLNMGGPLAI-GLGVVFVSSLGS 253 (336)
T ss_pred -HHHHHHHHHHHHHHHhhHHhcc-cHHHHHHHHHHcccc--chhhhhhhcCcHHH--HhhcCCCcee-eeeeEehhhhhh
Confidence 3556677888899899888654 558889999999999 89999999888765 8889998888 888889999999
Q ss_pred Hh-cchh----HHHHHHHHHHHHHHHHHHHHHHHHHhhc------CC--C-chhHHHHHHHHHHHHHHHHHH
Q 043373 576 IF-NRGP----LITAIDAGLGVLVFTMFALYDAGKILKR------SD--S-DDHHKASAHLYWDLSAPTLWC 633 (809)
Q Consensus 576 IF-~~S~----lLsLIIS~LGVLVFSGYIAYDTQrIIkr------yS--p-DDYI~AALSLYLDFINLFLyI 633 (809)
|| +..+ .+.-+--+.|+++||+|++||||++.++ ++ | -|+|.+++++|+|..|||++|
T Consensus 254 m~LPPtta~GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvlnifiri 325 (336)
T KOG1630|consen 254 MFLPPTTALGAGLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIRI 325 (336)
T ss_pred hhcCCchhhhhhhHHHHHhccHHHHHHHHHHhHHHHHHHHHhCcchhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 99 3222 2333445567899999999999999853 11 2 578999999999999999998
No 7
>KOG1629 consensus Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]
Probab=99.91 E-value=7.5e-24 Score=210.82 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=157.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhHHHHHHHHHHHHHhhhhchhhhhcccchhhHHHHH
Q 043373 421 QNLSPRLEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYTHFLSPILFLIPTCKAFKKEISKQKYDSTAGLLVS 500 (809)
Q Consensus 421 ~~~sIR~gFIRKVYgILALQLLITAAVAal~~fspp~~~FL~~NpWL~IvsLILLIaL~~afsk~i~RRK~PsNAgLILL 500 (809)
-+|++| +|++|||..++..+++|++.|++-+... ..+....++.+++++.+.| ...++.. ++.+|
T Consensus 19 ~sP~vq-~HLkkvY~tl~~~~~asA~GAylhM~~n------igG~lsalg~l~~miwl~~------~py~hk~--rl~lL 83 (235)
T KOG1629|consen 19 ISPAVQ-NHLKKVYLTLALALFASAAGAYLHMVWN------IGGLLSALGSLGLMIWLMF------TPYEHKT--RLGLL 83 (235)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHhhhh------ccchHHHHHHHHHHHHHhC------CCCccch--hHHHH
Confidence 345555 9999999999999999999988644221 1111134555666666655 1222222 48899
Q ss_pred HHHHHHHHHHHhHHh---hccChhHHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHHHh
Q 043373 501 AVHTAFGVFWADRNL---ANSNGRIMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQIF 577 (809)
Q Consensus 501 ~LFT~~mGvTLG~I~---afYdpsIVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLINIF 577 (809)
++|+++.|.++||.+ .-.+|+++++||..|+++| +++++-+++|. ++.+.++|+.|.+ ++-.+.+.++.|.|
T Consensus 84 ~~fa~l~GasvGP~i~~~ididpsIliTAf~GTav~F--~cfSasAmlAr--rreYLylGg~L~s-~~s~l~wl~l~n~~ 158 (235)
T KOG1629|consen 84 FLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIF--VCFSASAMLAR--RREYLYLGGLLSS-GLSLLLWLSLANSF 158 (235)
T ss_pred HHHHHHcCCcccchhhheeccChHHHHHHHHhhHHHH--HHHHHHHHHHh--hhhhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999975 3468999999999999999 66666677774 5679999999999 99999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCchhHHHHHHHHHHHHHHHHHHh
Q 043373 578 NRGPLITAIDAGLGVLVFTMFALYDAGKILKR--SDSDDHHKASAHLYWDLSAPTLWCS 634 (809)
Q Consensus 578 ~~S~lLsLIIS~LGVLVFSGYIAYDTQrIIkr--ySpDDYI~AALSLYLDFINLFLyIL 634 (809)
+.|.+..-+--++|+++|.||++||||.|+++ ...-||+.+|+.||.||+.+|.+||
T Consensus 159 fgS~~v~~~qLY~Gllvfvg~ivvdTQ~IiEKah~GdmDyv~Hsl~lf~dfvsvF~riL 217 (235)
T KOG1629|consen 159 FGSIWVFKFQLYVGLLVFVGFIVVDTQEIIEKAHHGDMDYVQHSLDLFTDFVSVFRRIL 217 (235)
T ss_pred hhHHHHHHHHHHHHHHHhheeEEeeHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999965 4567999999999999999999986
No 8
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=98.25 E-value=0.00014 Score=76.84 Aligned_cols=128 Identities=13% Similarity=-0.036 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhHHhhccC-------hhHHHHHHHHHHHHHHHhhhh-hhhheecccCcccc-CCchHHHHHHHHHHHHH
Q 043373 501 AVHTAFGVFWADRNLANSN-------GRIMLAALLTTLYILFHVSLG-AVFEVVVKDDGDLS-CFRPSNYSLSMTIAFLV 571 (809)
Q Consensus 501 ~LFT~~mGvTLG~I~afYd-------psIVI~AFlITAaIF~~ISLT-aYAffA~QTKrDFT-~LGGfLFmLGLIgLIIA 571 (809)
.+|++++|+.+|.+..++. |.++.+|.+.|.++| +++. +|.. . .-.-| .+..+.++ +.++.+++
T Consensus 118 ~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf--~~ml~lYk~---g-~IrvT~kf~~iv~~-a~~gi~~~ 190 (274)
T PF12811_consen 118 PIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVF--AVMLALYKT---G-IIRVTPKFRRIVMI-ATFGIALF 190 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH--HHHHHHHHh---C-CeeechHHHHHHHH-HHHHHHHH
Confidence 5699999999998754332 779999999999999 4433 3321 1 11222 45555555 66666666
Q ss_pred HHHHHh---c-----chhHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCchhH-HHHHHHHHHHHHHHHHHhc
Q 043373 572 SFLQIF---N-----RGPLITAIDAGLGVLVFTMFALYDAGKILK---RSDSDDHH-KASAHLYWDLSAPTLWCSH 635 (809)
Q Consensus 572 SLINIF---~-----~S~lLsLIIS~LGVLVFSGYIAYDTQrIIk---rySpDDYI-~AALSLYLDFINLFLyIL~ 635 (809)
.++|+. + .+..+.+.+|.+++++=+..++.|-+.|-+ +--|+.|= .+|+.|=+.+|=||+.||+
T Consensus 191 ~Lv~~vl~lf~~~l~~~gplgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL~vTLVWLYlEILR 266 (274)
T PF12811_consen 191 YLVNLVLSLFVGSLRDGGPLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKKMEWYAAFGLLVTLVWLYLEILR 266 (274)
T ss_pred HHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666653 1 234677888999999999999999988853 23466664 4899998888888888864
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=95.80 E-value=0.69 Score=48.73 Aligned_cols=193 Identities=15% Similarity=0.140 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhHHHHHHHHHHHHHhhhhchhhhhcccchhhHHHHHHHHHHH
Q 043373 427 LEFIKKVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYTHFLSPILFLIPTCKAFKKEISKQKYDSTAGLLVSAVHTAF 506 (809)
Q Consensus 427 ~gFIRKVYgILALQLLITAAVAal~~fspp~~~FL~~NpWL~IvsLILLIaL~~afsk~i~RRK~PsNAgLILL~LFT~~ 506 (809)
.+-+.|+=..+++ +++|+++++....+.|...... +....+..++++++..+ . .++.+|. .-..|+++
T Consensus 52 ddvvtkTG~tLav-~~vtavvs~~~~lv~p~La~~l-tlvGaiGGlilvLvatF--g---kK~~spa-----i~l~YAv~ 119 (276)
T COG4760 52 DDVVTKTGATLAV-LLVTAVVSFFLVLVNPALAMPL-TLVGAIGGLILVLVATF--G---KKQWSPA-----IVLSYAVL 119 (276)
T ss_pred cchhhhhhHHHHH-HHHHHHHHHHHHhcCHHhcccH-hHHHHhhhHHHHHHHHh--c---cccCChH-----HHHHHHHH
Confidence 4667777766666 4566666665444333221110 00022334444433322 1 1222342 33468999
Q ss_pred HHHHHhHHh------hccC---hhHHHHHHHHHHHHHHHhhhhhhhhe--ecccCccccCCchHHHHHHHHHHHHHHHH-
Q 043373 507 GVFWADRNL------ANSN---GRIMLAALLTTLYILFHVSLGAVFEV--VVKDDGDLSCFRPSNYSLSMTIAFLVSFL- 574 (809)
Q Consensus 507 mGvTLG~I~------afYd---psIVI~AFlITAaIF~~ISLTaYAff--A~QTKrDFT~LGGfLFmLGLIgLIIASLI- 574 (809)
+|+-+|.+. .+|+ +.+|.+|.+.|.++| ++|-.. +- +.+---.|+.+---... |+.+|++.+++
T Consensus 120 EGlFlGaiS~lla~ftV~~anaGgligqAvLgT~Gvf--~gML~v-YktGaIkvTpkF~r~v~a~~~-Gvl~L~Lgn~vl 195 (276)
T COG4760 120 EGLFLGAISFLLANFTVYEANAGGLIGQAVLGTFGVF--FGMLVV-YKTGAIKVTPKFTRMVVAATF-GVLVLMLGNFVL 195 (276)
T ss_pred HHHHHHHHHHHhccceEEeccccceeHHHHHHHHHHH--HHHHHH-HhcCceeecchhHHHHHHHHH-HHHHHHHHHHHH
Confidence 999988764 2332 568899999999999 666422 10 11111235443333333 44555554443
Q ss_pred HHh--cchhH------HH--HHHHHHHHHHHHHHHHHHHHH-HhhcCCCch-hHHHHHHHHHHHHHHHHHHhc
Q 043373 575 QIF--NRGPL------IT--AIDAGLGVLVFTMFALYDAGK-ILKRSDSDD-HHKASAHLYWDLSAPTLWCSH 635 (809)
Q Consensus 575 NIF--~~S~l------Ls--LIIS~LGVLVFSGYIAYDTQr-IIkrySpDD-YI~AALSLYLDFINLFLyIL~ 635 (809)
.|| .++++ +- .-.-|+|+.-|+..+=||.-. +++...|+- --..|+.|-...+=+|+-||+
T Consensus 196 a~F~Gg~~pllr~gG~~~IiFSLfcigiAAf~fllDFDaad~~vr~GAP~kmaWgvAlGL~VTLVWLY~EiLR 268 (276)
T COG4760 196 AMFVGGGIPLLRSGGPFGIIFSLFCIGIAAFSFLLDFDAADQMVRAGAPEKMAWGVALGLTVTLVWLYLEILR 268 (276)
T ss_pred HHHhcCCcccccCCCceEeeHHHHHHHHHHHHHHhhhhHHHHHHHcCChhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 355 12221 11 123467788899888888643 233333432 244577777777777776654
No 10
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.23 E-value=2.1e+02 Score=34.71 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=36.7
Q ss_pred hhhhhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHhhhhhccHH
Q 043373 286 TDIRHFWEGENNTIAKFLKSLEVEYQDEVREIRESLVKLKESTEK 330 (809)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (809)
.+--+.|+.|-|.+.+|-+..+-|-+.|-.++...+.-+.+...|
T Consensus 56 ~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~ 100 (617)
T KOG1162|consen 56 EVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVK 100 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344567888999999999999999999999998888777665544
No 11
>COG5500 Predicted integral membrane protein [Function unknown]
Probab=69.01 E-value=1.4 Score=43.49 Aligned_cols=55 Identities=42% Similarity=0.698 Sum_probs=44.2
Q ss_pred heeecCccceeeccCCccchhHHHHHHhhhHhhhccccCCCceeeeehhhHHHHHHHHHHHhhhccchhh
Q 043373 734 IQVINPGPITAAVGTGLSCIPFLVLLVSNIAMVFKGFHNDDDYVVASVHFFWGLYGLFICLIKTFGDAIL 803 (809)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (809)
|.||||=-.||-.|||+.|+-. + +|.+-|+|....| |-+-|-.+.++-|||-.|.
T Consensus 51 itvinPlFmtAf~GTgllcliL---l----~~a~~gW~~pgsy--------~Llag~l~YlvGt~~VTiV 105 (159)
T COG5500 51 ITVINPLFMTAFLGTGLLCLIL---L----ISALLGWHQPGSY--------YLLAGSLLYLVGTFGVTIV 105 (159)
T ss_pred EEEeChHHHHHHHhhhHHHHHH---H----HHHHhccCCCCch--------hhhhhhhhheecCceEEEE
Confidence 6799999999999999999744 3 3567899998876 6677888888888886553
No 12
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=64.85 E-value=1.5e+02 Score=33.42 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=35.7
Q ss_pred hHHHhhhhhccccccccccCcchhhhHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043373 390 LEEEATKILTLKDLANCFLNKDLEKYIKKASQNLSPRLEFIKKVSVHLGVHLLSGIVAYASMK 452 (809)
Q Consensus 390 ~~~eat~~~~lk~~a~cf~~~dfskyI~~as~~~sIR~gFIRKVYgILALQLLITAAVAal~~ 452 (809)
+.+||..+... ...=..+.+++ .+......+++-.+.++++..-+.+++++.+++.++++
T Consensus 210 t~eEA~~La~~--L~~g~lp~~~~-~~~~~~vgp~lg~~~i~~~~~a~~ig~ilV~l~~~~~y 269 (397)
T TIGR01129 210 TAEEANDLALV--LRSGALPAPLQ-ILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYY 269 (397)
T ss_pred chhHHHHHHHH--HHhccccCCcc-cccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677665544 22222333333 34444567778788888888887777777666555433
No 13
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=63.14 E-value=2.5e+02 Score=31.35 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cChhHHHHHHhhhH-HHHHHHHHHHHHhhhhchhhhhcccchhhHHHHHHHHHHHH
Q 043373 430 IKKVSVHLGVHLLSGIVAYASMK-MCPPKTAAFKQNYT-HFLSPILFLIPTCKAFKKEISKQKYDSTAGLLVSAVHTAFG 507 (809)
Q Consensus 430 IRKVYgILALQLLITAAVAal~~-fspp~~~FL~~NpW-L~IvsLILLIaL~~afsk~i~RRK~PsNAgLILL~LFT~~m 507 (809)
+-++|.|=++=|+......+++. ..+|+..++..+.. ..+..+++-...+.-+ .++..+.+.....+..++++.
T Consensus 102 i~~tF~~ssIlLl~~Siss~iG~YiLapl~~~i~~~~gAaila~iviP~~~~y~l----n~~~~s~~~~R~~ll~~a~~Q 177 (299)
T PF05884_consen 102 IVETFSWSSILLLGFSISSFIGGYILAPLFGIIFGPFGAAILAYIVIPLIAYYYL----NKEDGSLAESRLALLFFALFQ 177 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc----ccccCchHHHHHHHHHHHHHH
Confidence 44666666665554444444432 33444444443332 2222232222222211 111122232245677889999
Q ss_pred HHHHhHHhhcc
Q 043373 508 VFWADRNLANS 518 (809)
Q Consensus 508 GvTLG~I~afY 518 (809)
|+++|...+..
T Consensus 178 GvL~Ga~ls~~ 188 (299)
T PF05884_consen 178 GVLVGAGLSHL 188 (299)
T ss_pred HHHHHHHhhcc
Confidence 99999887643
No 14
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=61.81 E-value=3.1 Score=41.02 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcHHHHhhhhhhhhccCCccccchhHH
Q 043373 204 KKLIELVESLSEEGLKRVGKHVLESGGVESNKAFEL 239 (809)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (809)
++.++-...||++.-..+-++.-+-.++-+|+-|+.
T Consensus 112 k~~~~~ykaLs~~ak~dL~k~FP~i~~~~~~~k~~~ 147 (154)
T PF05823_consen 112 KKVIDSYKALSPEAKDDLKKNFPIIASFLQNDKFQA 147 (154)
T ss_dssp ----HHHHTS-HHHHHHHHHH-TT------------
T ss_pred hhhHHHHHcCCHHHHHHHHHHCccchhhhhhhhhhh
Confidence 444555566666655555555555555555555543
No 15
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=61.59 E-value=2.6 Score=46.30 Aligned_cols=52 Identities=12% Similarity=0.216 Sum_probs=0.0
Q ss_pred CccccCCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 043373 550 DGDLSCFRPSNYSLSMTIAFLVSFLQIFNRGPLITAIDAGLGVLVFTMFALY 601 (809)
Q Consensus 550 KrDFT~LGGfLFmLGLIgLIIASLINIF~~S~lLsLIIS~LGVLVFSGYIAY 601 (809)
+.--|+|.-..|.|+++.-++.-++....+-.|+.+.+-..=+++|.+.++|
T Consensus 131 ~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIW 182 (381)
T PF05297_consen 131 ELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIW 182 (381)
T ss_dssp ----------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544444333332333333333444455444333334455544443
No 16
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=61.26 E-value=1.9e+02 Score=33.96 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=33.7
Q ss_pred hHHHhhhhhc-cccccccccCcchhhhHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043373 390 LEEEATKILT-LKDLANCFLNKDLEKYIKKASQNLSPRLEFIKKVSVHLGVHLLSGIVAYASM 451 (809)
Q Consensus 390 ~~~eat~~~~-lk~~a~cf~~~dfskyI~~as~~~sIR~gFIRKVYgILALQLLITAAVAal~ 451 (809)
+.+||..+.. |+.+++ +.+++ .+......+++=...+++...-+.+++++.+++.++.
T Consensus 295 ~~~ea~~la~~L~~gal---p~~~~-~~~~~~VgpslG~~~i~~~~~A~lig~ilV~i~m~~~ 353 (498)
T PRK05812 295 TAEEARDLALLLRAGAL---PAPLE-IVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILY 353 (498)
T ss_pred hhhhHHHHHHHHhcccc---cCCce-eecccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554433 433442 22222 2444456778888888888887777777665554443
No 17
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=60.99 E-value=2.7e+02 Score=32.99 Aligned_cols=335 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhccHHHhhhcccCCccccCCcchhhHHHHHHhhcccccccCcccccccccccCcccCCchhhhhh
Q 043373 311 QDEVREIRESLVKLKESTEKEKKKINKDSVEGSRDGETVKIKKILKRWGLSEKDMKPALELVDGLSEGSRVNSRKFLESL 390 (809)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~e~~~~Pa~~~~~~~~~g~~~~s~~~~es~ 390 (809)
++.++++++.+.++++.-++-++++.+-..+-...=......=...+.-.+-...-...+..+-+.-|--....+-++..
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~~ 293 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKEL 293 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHHH
Q ss_pred HHHhhh---hhccccccccccCcchhhhHhhhcCChhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhc
Q 043373 391 EEEATK---ILTLKDLANCFLNKDLEKYIKKASQNLSPRLEFIKKVSVHL--------------GVHLLSGIVAYASMKM 453 (809)
Q Consensus 391 ~~eat~---~~~lk~~a~cf~~~dfskyI~~as~~~sIR~gFIRKVYgIL--------------ALQLLITAAVAal~~f 453 (809)
.++++. ++...+-. .+.| ..++..|+.-+.|-|-.+ +.=+++|+.+-+-+++
T Consensus 294 l~~~~~~~~~v~~~~~~---~~~~--------~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~ 362 (646)
T PRK05771 294 IDKATGGSAYVEFVEPD---EEEE--------EVPTKLKNPKFIKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMML 362 (646)
T ss_pred HHHhcCCcEEEEEeCCC---CcCC--------CCCEEeeCCchhhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHH
Q ss_pred ChhHHHHHHhhhHHHHHHHHHHHHHhhhhchhhhhcc-------cchhhHHHHHHHHHHHHHHHHhHHhhccCh------
Q 043373 454 CPPKTAAFKQNYTHFLSPILFLIPTCKAFKKEISKQK-------YDSTAGLLVSAVHTAFGVFWADRNLANSNG------ 520 (809)
Q Consensus 454 spp~~~FL~~NpWL~IvsLILLIaL~~afsk~i~RRK-------~PsNAgLILL~LFT~~mGvTLG~I~afYdp------ 520 (809)
.. .--+.++++++++. .+++ .....-+..++++|+.+|++.|..+....+
T Consensus 363 gD-----------~GyGLil~l~~~~l------~~~~~k~~~~~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~~~~ 425 (646)
T PRK05771 363 GD-----------AGYGLLLLLIGLLL------SFKLKKKSEGLKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFLPGG 425 (646)
T ss_pred Hh-----------HHHHHHHHHHHHHH------HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccccc
Q ss_pred ------------------hHHHHHHHHHHH-HHHHhhhhhhhheecccCcc--ccCCchHHHHHHHHHHHHHHH-HHHh-
Q 043373 521 ------------------RIMLAALLTTLY-ILFHVSLGAVFEVVVKDDGD--LSCFRPSNYSLSMTIAFLVSF-LQIF- 577 (809)
Q Consensus 521 ------------------sIVI~AFlITAa-IF~~ISLTaYAffA~QTKrD--FT~LGGfLFmLGLIgLIIASL-INIF- 577 (809)
.....|+++-.+ ++.+.++.++-.+-.....| +...+.+++.+|++.++...+ ....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~lsl~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~~~~~~~~ 505 (646)
T PRK05771 426 YLELPEGYPSLSTENDVMTILIISLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGFGLVVGL 505 (646)
T ss_pred cccccCCccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEeeecCCCcchhh
Q 043373 578 NRGPLITAIDAGLGVLVFTMFALYDAGKILKRSDSDDHHKASAHLYWDLSAPTLWCSHGPAPPPVWVTTRYISDGVELAL 657 (809)
Q Consensus 578 ~~S~lLsLIIS~LGVLVFSGYIAYDTQrIIkrySpDDYI~AALSLYLDFINLFLyIL~G~~~~~~~~t~r~~~dgv~l~~ 657 (809)
....+....+.++|++++...-..|...+..... .+.+| |++..|-.+|.= ..|.-
T Consensus 506 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~d~lSY----------------~RL~A 561 (646)
T PRK05771 506 GPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALG-------GLGLY-EITGYLGDVLSY----------------ARLMA 561 (646)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhccccchhhh-------hhhHH-HHHHHHHHHHHH----------------HHHHH
Q ss_pred HHHHHHHhhhheeeeeeecCCchHHHHHHHHHHHHHHHHh
Q 043373 658 FNVAIAAFGVVLADVHIANSNGLIMLGVLISTLALFLLQI 697 (809)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (809)
+..|-++.+.+.-..--.-.++.-.+|.++..+.+.+.++
T Consensus 562 lgLa~~~ia~~~n~la~~~~~~~~~~~~i~~ili~v~Gh~ 601 (646)
T PRK05771 562 LGLAGAGIAMAFNLMAGLLPPSIGVIGIIVGIIIFIFGHL 601 (646)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
No 18
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=57.27 E-value=41 Score=30.77 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHhhcC-CCchh----HHHHHHHHHHHHHHHHHHh
Q 043373 584 TAIDAGLGVLVFTMFALY-------DAGKILKRS-DSDDH----HKASAHLYWDLSAPTLWCS 634 (809)
Q Consensus 584 sLIIS~LGVLVFSGYIAY-------DTQrIIkry-SpDDY----I~AALSLYLDFINLFLyIL 634 (809)
-+.+.+++..+|.-|++| |.|.+++++ -|.|| -.+|.-+-+-+|..|+.++
T Consensus 9 gl~lv~iSl~iFtYYT~WViilPFvDs~hiihKyFLpr~yAi~iPvaagl~ll~lig~Fis~v 71 (81)
T KOG3488|consen 9 GLMLVYISLAIFTYYTIWVIILPFVDSMHIIHKYFLPREYAITIPVAAGLFLLCLIGTFISLV 71 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777776 888888764 57777 3456666678899999875
No 19
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=56.70 E-value=74 Score=36.27 Aligned_cols=8 Identities=25% Similarity=0.140 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 043373 438 GVHLLSGI 445 (809)
Q Consensus 438 ALQLLITA 445 (809)
-+++.+|.
T Consensus 16 kvglal~l 23 (406)
T PF11744_consen 16 KVGLALTL 23 (406)
T ss_pred HHHHHHHH
Confidence 34444443
No 20
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=56.44 E-value=3.5e+02 Score=30.75 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHhhHHHHHHHhhcCCCCCchhhhhhhhccccccccccccccCCCCchHHHHHHHhhcChHHHHHHHH
Q 043373 129 RIFEILMGLSEEEKRKLSEIVEEWNSGGEDGKIGELVEGLSREGKRKLCGVLKDLSDGDKEKITELLEGLNEKQTKKLIE 208 (809)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (809)
.+-++|..|+++|+.++-+.+ ++....++.+.+..+-+.+ .++.+ ++++..++++.+++.+...++
T Consensus 34 dia~~l~~l~~~~~~~~~~~l-------~~~~~a~vl~~l~~~~~~~---ll~~l---~~~~~~~~~~~l~~dd~~~ll- 99 (449)
T TIGR00400 34 DIAEALKRLPGTELILLYRFL-------PKKIAVDTFSNLDQSTQNK---LLNSF---TNKEISEMINEMNLDDVIDLL- 99 (449)
T ss_pred HHHHHHHhCCHHHHHHHHHhC-------ChhhHHHHHHcCCHHHHHH---HHHhC---CHHHHHHHHHcCChhHHHHHH-
Confidence 455555566666655543332 1234555555555443332 22222 234455555555555444333
Q ss_pred HHHHhcHHHHhhhhhhhhccCCccccchhHHHHhhhhchhhhhhhhhcchh--HHHHHHHHHhHhhhccCCCCchhhhhh
Q 043373 209 LVESLSEEGLKRVGKHVLESGGVESNKAFELLLIDGLIKEDRKRVRNFACS--VAIFKILLCLREIVKVDDGISKEELVT 286 (809)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (809)
+.+.+++.+++ ...+-+++|+.+++..-- --+-.+. -++.+.++...+-+|...
T Consensus 100 --~~l~~~~~~~l--------------------L~~l~~~er~~i~~ll~~~e~tvg~iM--t~~~~~v~~~~tv~eal~ 155 (449)
T TIGR00400 100 --EEVPANVVQQL--------------------LASSTEEERKAINLLLSYSDDSAGRIM--TIEYVELKEDYTVGKALD 155 (449)
T ss_pred --HhCCHHHHHHH--------------------HHcCCHHHHHHHHHHhCCCcchHHHhC--cCceEEECCCCcHHHHHH
Confidence 44555544432 223445566555543110 0011111 145566666666666666
Q ss_pred hhhh
Q 043373 287 DIRH 290 (809)
Q Consensus 287 ~~~~ 290 (809)
-+|+
T Consensus 156 ~l~~ 159 (449)
T TIGR00400 156 YIRR 159 (449)
T ss_pred HHHh
Confidence 5554
No 21
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=56.42 E-value=3.1e+02 Score=30.14 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043373 428 EFIKKVSVHLGVHLLSGIVA 447 (809)
Q Consensus 428 gFIRKVYgILALQLLITAAV 447 (809)
.|.||||..=.+++...+..
T Consensus 31 ~~~~r~~~~r~~g~~~~~~~ 50 (366)
T PRK10245 31 RFARRVRLPRAVGLAGMFLP 50 (366)
T ss_pred hhHHHHHHHHHHHHHHhHHH
Confidence 59999998777766655443
No 22
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=55.21 E-value=17 Score=33.96 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=4.8
Q ss_pred hcCCHHHHhhH
Q 043373 135 MGLSEEEKRKL 145 (809)
Q Consensus 135 ~~~~~~~~~~~ 145 (809)
..||+|||++|
T Consensus 93 q~l~~eeR~~l 103 (107)
T PF11304_consen 93 QQLPPEERQAL 103 (107)
T ss_pred HcCCHHHHHHH
Confidence 44444444443
No 23
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=53.10 E-value=17 Score=37.86 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=65.4
Q ss_pred cCCCCchhhhhhhhhhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHhhhhhccHHHhhhcccCCccccCCcchhhHHH
Q 043373 275 VDDGISKEELVTDIRHFWEGENNTIAKFLKSLEVEYQDEVREIRESLVKLKESTEKEKKKINKDSVEGSRDGETVKIKK 353 (809)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (809)
||||+-+-|=+-.+.-||.=.+.++.|--.+++ +.|.+..+...-...++|.-++||.+..|.--||.+.--+-++-+
T Consensus 53 VDDgvV~~EK~GtsN~YWsF~s~~~qk~~~~~~-~l~~~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~ 130 (209)
T COG5124 53 VDDGVVSVEKCGTSNIYWSFKSQTLQKLYDSSE-LLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLE 130 (209)
T ss_pred hhcCceeeeeeccceeEEecchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHH
Confidence 799999999999999999999999998655554 568888888888899999999999888888888887766655543
No 24
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=52.09 E-value=1.9e+02 Score=32.24 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEeeecCCCcchhhHHHHHHHhhhheeeeeeecCCchHHHHHHHHHH
Q 043373 621 HLYWDLSAPTLWCSHGPAPPPVWVTTRYISDGVELALFNVAIAAFGVVLADVHIANSNGLIMLGVLISTL 690 (809)
Q Consensus 621 SLYLDFINLFLyIL~G~~~~~~~~t~r~~~dgv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (809)
.+-+=+.-+|.-+|.|....-.|++ |-|++..+-.+.+|-..+.--| .| |-.-.+|..+++-
T Consensus 167 R~~ll~~a~~QGvL~Ga~ls~~~l~------sePf~~LT~iv~sfi~~~i~~~-~~-~R~~lLg~~vg~s 228 (299)
T PF05884_consen 167 RLALLFFALFQGVLVGAGLSHLYLS------SEPFIALTPIVSSFIYPLIAGH-GT-NRQKLLGIVVGTS 228 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc------CCcHHHHHHHHHHHHHHHHccC-Cc-chHHHHHHHHHHH
Confidence 3335556788899999776666655 6899998888877665555555 33 5555555544443
No 25
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=51.28 E-value=5.1e+02 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEeeec
Q 043373 626 LSAPTLWCSHGPAPPPVWVTTRYI 649 (809)
Q Consensus 626 FINLFLyIL~G~~~~~~~~t~r~~ 649 (809)
++..|-++.|| -+.|.|+.+|+.
T Consensus 320 ~~p~~~~i~~g-f~~p~~~~~R~~ 342 (843)
T PF09586_consen 320 FIPPLNSIWNG-FSYPNGFPYRWS 342 (843)
T ss_pred HHHHHHHHHhC-CccccccchHHH
Confidence 34555567888 677778888864
No 26
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=49.97 E-value=2.2e+02 Score=33.02 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=21.2
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043373 571 VSFLQIFNRGPLITAIDAGLGVLVFTMFALYDAGKI 606 (809)
Q Consensus 571 ASLINIF~~S~lLsLIIS~LGVLVFSGYIAYDTQrI 606 (809)
.+++....++.=..++++.+++.+--+.+.|=|.+|
T Consensus 391 Y~~Ly~lLq~EdyALL~GSl~LF~iLa~vM~~TRki 426 (430)
T PF06123_consen 391 YGFLYVLLQSEDYALLMGSLLLFIILALVMYLTRKI 426 (430)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHheeecc
Confidence 344333345555556677777666666777766654
No 27
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=48.70 E-value=5.5e+02 Score=30.81 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHH
Q 043373 436 HLGVHLLSGIVAYASMKMCPPKTAAFK 462 (809)
Q Consensus 436 ILALQLLITAAVAal~~fspp~~~FL~ 462 (809)
-|+++|..=++..+..-..|.-.+|..
T Consensus 318 ~~g~~li~egi~sa~yh~CPn~~~fqf 344 (570)
T PF13965_consen 318 AMGLALIMEGILSACYHICPNRSNFQF 344 (570)
T ss_pred HHHHHHHHHHHHHHHhhcCcCchhhHH
Confidence 344444444444443334555444433
No 28
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=46.91 E-value=4.6e+02 Score=29.35 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHHHHHhHHhhccChhHHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHHHhc-------
Q 043373 506 FGVFWADRNLANSNGRIMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQIFN------- 578 (809)
Q Consensus 506 ~mGvTLG~I~afYdpsIVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLINIF~------- 578 (809)
..|-.+......|..-.-.+.+-.++..| ++-++.+.+ ++|.....+.+.+.. +.++.+....-...
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~-~~~LS~~fL---~~ry~~~~~~gv~i~--i~Gv~lv~~sD~~~~~~~~~~ 163 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPF-VMILSFIFL---KRRYSWFHILGVLIC--IAGVVLVVVSDVLSGSDSSSG 163 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHH-HHHHHHHHH---HhhhhHHHHHHHHHH--HhhhhheeeecccccccCCCC
Confidence 34444444444454433334444444444 355554433 677777766555444 22222222222221
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q 043373 579 RGPLITAIDAGLGVLVFTMFALYDAGKILKRSDSDDHHKASAHLYWDLSAP 629 (809)
Q Consensus 579 ~S~lLsLIIS~LGVLVFSGYIAYDTQrIIkrySpDDYI~AALSLYLDFINL 629 (809)
..+..--+++.+|++++..+.++.=- ++++.+.. ...|-+.+|--+|+.
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~-~v~~~~~~-~~lg~~Glfg~ii~~ 212 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEK-LVKKAPRV-EFLGMLGLFGFIISG 212 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHH-hcccCCHH-HHHHHHHHHHHHHHH
Confidence 12355556667777888877777533 23332222 245666666555554
No 29
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=46.67 E-value=14 Score=33.33 Aligned_cols=32 Identities=44% Similarity=0.778 Sum_probs=20.5
Q ss_pred HHHhHhhhccCCCCchhhhhhhhh--------hhcccCcc
Q 043373 266 LLCLREIVKVDDGISKEELVTDIR--------HFWEGENN 297 (809)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 297 (809)
|-|.|.+.|--+--+--|=++|+| |||||+.-
T Consensus 6 lsCyrk~L~D~nCH~iPeG~~~L~~id~~lqdHFW~GkgC 45 (78)
T PF15224_consen 6 LSCYRKILKDHNCHNIPEGVADLRQIDVNLQDHFWEGKGC 45 (78)
T ss_pred hhHHHHHhccCCcCcCchhhhhhhhhccchhhhcccCCCc
Confidence 456676666555555555555554 89999863
No 30
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=46.54 E-value=6.2e+02 Score=31.17 Aligned_cols=32 Identities=6% Similarity=-0.189 Sum_probs=22.2
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043373 419 ASQNLSPRLEFIKKVSVHLGVHLLSGIVAYAS 450 (809)
Q Consensus 419 as~~~sIR~gFIRKVYgILALQLLITAAVAal 450 (809)
..-.++.-.+.+++....+.+++++.+++.++
T Consensus 254 ~~vgptlg~~a~~~~~~a~~ial~lV~i~l~~ 285 (755)
T PRK13024 254 RSVGPTLGQDAIDAGIIAGIIGFALIFLFMLV 285 (755)
T ss_pred eEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888887777777766555443
No 31
>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane
Probab=45.15 E-value=21 Score=36.13 Aligned_cols=49 Identities=41% Similarity=0.750 Sum_probs=30.5
Q ss_pred HHHHHHhcCCccCCcccccccCCCCcCCCchhhHHhhhcCCCCCCCCcchhh-hccccC
Q 043373 28 LLRRVRAAGFTPRTDFSCKLSHGHESYNFPEKIIATTRKRGIRPPNIKQSEV-AGAAAG 85 (809)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 85 (809)
++||+|++||+-.. .|.+ | ..=||.. -|...|+|||..-...+ -|||.|
T Consensus 34 y~RRLRa~GY~t~~-~SAr---G---LGD~~ay--Lt~~HGVRPpHLGk~~ig~~aavG 83 (154)
T PF11909_consen 34 YLRRLRAAGYRTLI-ISAR---G---LGDPEAY--LTKVHGVRPPHLGKQSIGRGAAVG 83 (154)
T ss_pred HHHHHHhcCceEEE-eccc---C---CCCHHHH--HhccCCCCCCCCCccccccccccc
Confidence 78999999997432 1111 1 1224432 47899999999854444 455554
No 32
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=43.38 E-value=3.1e+02 Score=26.37 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043373 428 EFIKKVSVHLGVHLLSGIVAYASMKM 453 (809)
Q Consensus 428 gFIRKVYgILALQLLITAAVAal~~f 453 (809)
++..++..+++.-++..+++.++..+
T Consensus 30 ~~~~~~l~~lGall~~~gii~fvA~n 55 (145)
T PF09925_consen 30 SWLARILLYLGALLLGLGIILFVAAN 55 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888877776666554443
No 33
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=41.29 E-value=8.8 Score=42.45 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEE
Q 043373 619 SAHLYWDLSAPTLWCSHGPAPPPVWVT 645 (809)
Q Consensus 619 ALSLYLDFINLFLyIL~G~~~~~~~~t 645 (809)
.|..++++|-+-+.++.- --|||
T Consensus 143 cLAF~LaivlLIIAv~L~----qaWfT 165 (381)
T PF05297_consen 143 CLAFLLAIVLLIIAVLLH----QAWFT 165 (381)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHH
Confidence 556677777666655333 25888
No 34
>COG1289 Predicted membrane protein [Function unknown]
Probab=40.97 E-value=2.2e+02 Score=33.80 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043373 580 GPLITAIDAGLGVLVFTMFALYDAGKI 606 (809)
Q Consensus 580 S~lLsLIIS~LGVLVFSGYIAYDTQrI 606 (809)
...++..++++-.++++.++.-|.+..
T Consensus 479 ~r~~d~~iG~lIa~~~a~~v~~~~~~~ 505 (674)
T COG1289 479 PRFLDTLLGSLIALALAFLVWPLWRPR 505 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 347788888888888888888777754
No 35
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=38.60 E-value=3.4e+02 Score=29.64 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043373 432 KVSVHLGVHLLSGIVAYA 449 (809)
Q Consensus 432 KVYgILALQLLITAAVAa 449 (809)
|+=.-+.+++.+|++...
T Consensus 41 ~~~~a~gMGlAvtfVl~~ 58 (244)
T PRK01061 41 RLSTANGLGMSVALVLTV 58 (244)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 344445566666655544
No 36
>COG4129 Predicted membrane protein [Function unknown]
Probab=38.58 E-value=5.8e+02 Score=28.63 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhchheeeecCCcccccccc
Q 043373 689 TLALFLLQISLDYALMVFNNKDLSKFESD 717 (809)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (809)
.+.-...|+.++|-.-+|.+.++.|-+..
T Consensus 266 ~l~~~~~~~~l~~~~~~~~~~~lp~t~e~ 294 (332)
T COG4129 266 SLTAAHLLIDLEETRKVFEALPLPKTREE 294 (332)
T ss_pred cchhHHHHHHHHHHHhhhccccccccHhh
Confidence 34444455555555555555554444333
No 37
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=38.05 E-value=1.6e+02 Score=36.94 Aligned_cols=18 Identities=17% Similarity=0.584 Sum_probs=12.3
Q ss_pred CCchhhhhhhhhhhcccC
Q 043373 278 GISKEELVTDIRHFWEGE 295 (809)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~ 295 (809)
|+|.+++..-++.-+.|.
T Consensus 738 Gls~~~v~~~l~~~~~G~ 755 (1037)
T PRK10555 738 GVSIDDINDTLQTAWGSS 755 (1037)
T ss_pred CCCHHHHHHHHHHHhcCc
Confidence 677777777777665553
No 38
>TIGR01806 CM_mono2 chorismate mutase, putative. This model represents a clade of probable chorismate mutases from alpha, beta and gamma proteobacteria as well as Mycobacterium tuberculosis and a clade of nematodes. Although the most likely function for the enzymes represented by this model is as a chorismate mutase, in no species are these enzymes the sole chorismate mutase in the genome. Also, in no case are these enzymes located in a region of the genome proximal to any other enzymes involved in chorismate pathways. Although the Pantoea enzyme has been shown to complement a CM-free mutant of E. coli, this was also shown to be the case with isochorismate-pyruvate lyase which only has a secondary (non-physiologically relevant) chorismate mutase activity. This enzyme is believed to be a homodimer and be localized to the periplasm.
Probab=37.47 E-value=49 Score=31.35 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=48.4
Q ss_pred HHHHhhcCCccccccCHHHH-HhHhhhc--ccCchhhhhHHHHHHhcCCHHHHhhHHHHHHHhhcCCCCC
Q 043373 93 EEEKKESGEPVEDRLSEEEK-KKICEFA--GRLSEEEKIRIFEILMGLSEEEKRKLSEIVEEWNSGGEDG 159 (809)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (809)
-+.|++.|.||.|.--|++. +++++.| +-|+++.-..||+.+|..|-+-.+ ...+.|..+++.-
T Consensus 24 a~~K~~~~~pI~Dp~RE~~Vl~~~~~~a~~~gL~~~~i~~if~~Ii~~Sk~~Q~---~~~~~w~~~~~~~ 90 (114)
T TIGR01806 24 AGYKARNNLPIEDSPREEQVLDSLRAQAQSAGLDPDYVTRFFQAQINANKAIQY---RLVSDWLNPPSPP 90 (114)
T ss_pred HHHHHHCCCCCCChHHHHHHHHHHHHHhHcCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCC
Confidence 46788899999997666553 4566666 568888889999999988866554 4578999877643
No 39
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=36.92 E-value=56 Score=30.69 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=59.0
Q ss_pred cccCHHHHHhHhhhccc---CchhhhhHH---HHHHhcCCHHHHhhHHHHHHHhhcCCCCCchhhhhhhhccccc---cc
Q 043373 105 DRLSEEEKKKICEFAGR---LSEEEKIRI---FEILMGLSEEEKRKLSEIVEEWNSGGEDGKIGELVEGLSREGK---RK 175 (809)
Q Consensus 105 ~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 175 (809)
+.||++++.-+-.++.+ |+++.|-+. .+-.-.||+||+..+.+-+..|++ |+.+-+ |+
T Consensus 3 ~~L~~~Qq~~L~pl~~~W~~l~~~qr~k~l~~a~r~~~mspeqq~r~~~rm~~W~~-------------LspeqR~~~R~ 69 (107)
T PF11304_consen 3 SSLSPAQQQALAPLAERWNSLPPEQRRKWLQIAERWPSMSPEQQQRLRERMRRWAA-------------LSPEQRQQARE 69 (107)
T ss_pred hhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-------------CCHHHHHHHHH
Confidence 35777777777777765 445555443 344467888888888888888865 333332 33
Q ss_pred cccccccCCCCchHHHHHHH---hhcChHHHHHHHH
Q 043373 176 LCGVLKDLSDGDKEKITELL---EGLNEKQTKKLIE 208 (809)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 208 (809)
--..++.|+..+++.+.+-. ..|.+.|-++|.+
T Consensus 70 ~~~~~~~Lpp~qR~~lr~~w~~yq~l~~eeR~~l~~ 105 (107)
T PF11304_consen 70 NYQRFKQLPPEQRQALRARWEAYQQLPPEERQALRE 105 (107)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567788888888665544 6777777776643
No 40
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=36.65 E-value=8.9e+02 Score=30.66 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=35.3
Q ss_pred hHHHhhhh-hccccccccccCcchhhhHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043373 390 LEEEATKI-LTLKDLANCFLNKDLEKYIKKASQNLSPRLEFIKKVSVHLGVHLLSGIVAYASMK 452 (809)
Q Consensus 390 ~~~eat~~-~~lk~~a~cf~~~dfskyI~~as~~~sIR~gFIRKVYgILALQLLITAAVAal~~ 452 (809)
+++||... +.|+.|++ +-.++ .+....-.|+.-.+.++++..-+.+++++.+++.++++
T Consensus 334 t~~eA~~La~~Lr~GaL---p~~~~-~~~~~~Vgpslg~~~i~~~~~aliig~ilV~l~m~lfy 393 (855)
T PRK14726 334 SEQGANDLAVLLRAGAL---PATLT-VVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFY 393 (855)
T ss_pred CHHHHHHHHHHHhcCCC---Ccccc-cccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666654 45555663 22222 12333456777788888888888887777666554433
No 41
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=36.39 E-value=5.4e+02 Score=29.73 Aligned_cols=11 Identities=0% Similarity=0.075 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 043373 616 HKASAHLYWDL 626 (809)
Q Consensus 616 I~AALSLYLDF 626 (809)
+..++...+=+
T Consensus 469 ~n~~la~l~G~ 479 (650)
T PF04632_consen 469 LNRALAILLGI 479 (650)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 42
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=36.27 E-value=7.6e+02 Score=32.97 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=20.0
Q ss_pred hcHHHHhhhhhh-hhccCCccccchhH
Q 043373 213 LSEEGLKRVGKH-VLESGGVESNKAFE 238 (809)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 238 (809)
.+|-.+.|.|.+ ++|--||...++-|
T Consensus 624 VsE~~iq~~GdrIiVeLPGv~dp~~Ae 650 (1403)
T PRK12911 624 VSEVEMRREGDHIHLSVPGSAGISSAE 650 (1403)
T ss_pred CCcchheEECCEEEEECCCCCChHHHH
Confidence 367777888855 46888998888888
No 43
>PRK11715 inner membrane protein; Provisional
Probab=36.15 E-value=4.3e+02 Score=30.75 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=17.9
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043373 571 VSFLQIFNRGPLITAIDAGLGVLVFTMFALYDAGKI 606 (809)
Q Consensus 571 ASLINIF~~S~lLsLIIS~LGVLVFSGYIAYDTQrI 606 (809)
.+++....++.=.-++++.+++.+--+.+.|=|.+|
T Consensus 397 Yg~Ly~lLq~EDyALL~GSllLF~~La~vM~~TR~i 432 (436)
T PRK11715 397 YGVLYGLLQSEDYALLLGSLLLFAVLALVMFLTRRI 432 (436)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHheeecc
Confidence 333333344444445566665555555555655543
No 44
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=35.51 E-value=4.4e+02 Score=26.88 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 043373 585 AIDAGLGVLVFTMFA 599 (809)
Q Consensus 585 LIIS~LGVLVFSGYI 599 (809)
.++..+|++.|.++-
T Consensus 181 ~~~iiig~i~~~~~~ 195 (206)
T PF06570_consen 181 WVYIIIGVIAFALRF 195 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444456666666553
No 45
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=34.70 E-value=2.9e+02 Score=29.49 Aligned_cols=50 Identities=24% Similarity=0.338 Sum_probs=37.6
Q ss_pred ccCchhhhhHHHHHH---hcCCHHHHhhHHHHHHHhhcCCCCCchhhhhhhhcccc
Q 043373 120 GRLSEEEKIRIFEIL---MGLSEEEKRKLSEIVEEWNSGGEDGKIGELVEGLSREG 172 (809)
Q Consensus 120 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (809)
|--+||++-.||+.| .|..+++-|+-++-.++|-.|. .+-++++-++.+|
T Consensus 66 GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~---s~~~i~~~l~~~~ 118 (214)
T TIGR03060 66 GYRPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGK---GLDEILSWLTQAN 118 (214)
T ss_pred CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHhccc
Confidence 566889999999987 4889999999999999998653 3445555555443
No 46
>PF13945 NST1: Salt tolerance down-regulator
Probab=33.95 E-value=32 Score=35.74 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=11.2
Q ss_pred hhhhHHHHHHhcCCHHHHhhHHH
Q 043373 125 EEKIRIFEILMGLSEEEKRKLSE 147 (809)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~ 147 (809)
||+.+|-+...+|+|||||.|-.
T Consensus 102 eEre~LkeFW~SL~eeERr~LVk 124 (190)
T PF13945_consen 102 EEREKLKEFWESLSEEERRSLVK 124 (190)
T ss_pred HHHHHHHHHHHccCHHHHHHHHH
Confidence 34444444455555555555443
No 47
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=33.44 E-value=2.3e+02 Score=29.68 Aligned_cols=15 Identities=0% Similarity=0.044 Sum_probs=9.6
Q ss_pred hhcccchhhHHHHHHHH
Q 043373 487 SKQKYDSTAGLLVSAVH 503 (809)
Q Consensus 487 ~RRK~PsNAgLILL~LF 503 (809)
.|+..|.- |=.|++|
T Consensus 92 v~KtsP~L--Yr~LGIf 106 (193)
T COG4657 92 VRKTSPTL--YRLLGIF 106 (193)
T ss_pred HHccCHHH--HHHHHHh
Confidence 45566766 6666666
No 48
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=32.63 E-value=86 Score=26.90 Aligned_cols=64 Identities=22% Similarity=0.471 Sum_probs=42.7
Q ss_pred HHHHhHhhhccc-CchhhhhHHHHHHhcCCHHHH------------hhHHHHHHHh-hcCCCCCchhhhhhhhccccccc
Q 043373 110 EEKKKICEFAGR-LSEEEKIRIFEILMGLSEEEK------------RKLSEIVEEW-NSGGEDGKIGELVEGLSREGKRK 175 (809)
Q Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 175 (809)
.-+.++|.++-. +. .+-+.+---+|+++.+- ....++...| +..|.+..++.|++.|.+-|++.
T Consensus 3 ~~~~~~~~l~~~~~g--~~W~~la~~Lg~~~~~i~~i~~~~~~~~~~~~~~lL~~W~~~~g~~at~~~L~~aL~~~~~~d 80 (88)
T smart00005 3 LTREKLAKLLDHPLG--LDWRELARKLGLSEADIDQIRTEAPRDLAEQSVQLLRLWEQREGKNATLGTLLEALRKMGRDD 80 (88)
T ss_pred hHHHHHHHHHcCccc--hHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHcChHH
Confidence 345667777766 43 33455666678876653 2455678888 56666788888888888777654
No 49
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.54 E-value=78 Score=29.71 Aligned_cols=77 Identities=25% Similarity=0.420 Sum_probs=52.2
Q ss_pred cCHHHHHhHhhhcccCchhhhhHHHHHHhcCCHHHHhhHH-----------HHHHHhhcCCCCCchhhhhhhhccccccc
Q 043373 107 LSEEEKKKICEFAGRLSEEEKIRIFEILMGLSEEEKRKLS-----------EIVEEWNSGGEDGKIGELVEGLSREGKRK 175 (809)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (809)
|.+..++++|++--... -=..+-+..++.|..+-|..+ |...-| |.....|++|++-|.+.+-..
T Consensus 6 Lp~~~~~~Lc~lLD~~~--~W~~LA~~i~~ys~~~v~~i~~~~~~g~SPt~eLL~~W--G~~n~Tv~~L~~~L~k~kl~~ 81 (97)
T cd08307 6 IPFTERKQLCALLDTDN--VWEELAFVMMGYSNDDVEGIQRCCLRGRSPTEELLDIW--GNKNHTITELFVLLYREKLFR 81 (97)
T ss_pred CCHHHHHHHHHHhCCcC--cHHHHHHHHhcCCHHHHHHHHHHHcCCCChHHHHHHHH--hhcCCCHHHHHHHHHHhchHH
Confidence 56677888887755442 112233334556666555543 556678 566789999999999999988
Q ss_pred cccccccCCCCc
Q 043373 176 LCGVLKDLSDGD 187 (809)
Q Consensus 176 ~~~~~~~~~~~~ 187 (809)
.+.++||.-|.+
T Consensus 82 Am~ilk~~v~~~ 93 (97)
T cd08307 82 AMRIIKDLVDPK 93 (97)
T ss_pred HHHHHHHhcChh
Confidence 888888876543
No 50
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=32.05 E-value=5.9e+02 Score=26.95 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHH
Q 043373 432 KVSVHLGVHLLSGIVAYASMKMCPPKTAA 460 (809)
Q Consensus 432 KVYgILALQLLITAAVAal~~fspp~~~F 460 (809)
|+=.-+..++.+|++.......+..++++
T Consensus 33 ~~~~a~gmGlAvtfV~~~s~~~~~~i~~~ 61 (200)
T TIGR01940 33 KVSTAFGLGVAVTFVLTITVPINNLIYTY 61 (200)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666655443333334444
No 51
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.85 E-value=2.9e+02 Score=29.37 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 043373 431 KKVSVHLGVHLLSGIVAYASMK 452 (809)
Q Consensus 431 RKVYgILALQLLITAAVAal~~ 452 (809)
|+-|..++..+++|++++++..
T Consensus 12 r~k~~~~G~~vl~ta~la~~s~ 33 (301)
T PF14362_consen 12 RNKYAGIGAAVLFTALLAGLSG 33 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888888887776543
No 52
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=31.82 E-value=7e+02 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043373 427 LEFIKKVSVHLGVHLLSGIVAYA 449 (809)
Q Consensus 427 ~gFIRKVYgILALQLLITAAVAa 449 (809)
++..+|+....-+.+.+..+++.
T Consensus 46 ~~~~~~~~~~fL~~l~~G~~~gi 68 (257)
T PF04018_consen 46 KEAWKKINLKFLLPLGIGILIGI 68 (257)
T ss_pred HHHHHhhcHHHHHHHHHHHHHHH
Confidence 46677777777776666655554
No 53
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=30.71 E-value=5.5e+02 Score=27.14 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043373 432 KVSVHLGVHLLSGIVAYAS 450 (809)
Q Consensus 432 KVYgILALQLLITAAVAal 450 (809)
|+=.-+..++.+|++....
T Consensus 35 ~~~~algmGlAvtfVl~~s 53 (199)
T PRK12456 35 KVETAFGLGLTVTALLAIA 53 (199)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4444556666666665543
No 54
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=30.23 E-value=6.6e+02 Score=30.96 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=24.0
Q ss_pred ccCccccCCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 043373 548 KDDGDLSCFRPSNYSLSMTIAFLVSFLQIFNRGPLITAIDAGLGVLVFT 596 (809)
Q Consensus 548 QTKrDFT~LGGfLFmLGLIgLIIASLINIF~~S~lLsLIIS~LGVLVFS 596 (809)
++|+.|+.=-.+.++ -+++++++|+.++....--+.-+++.+.+++|+
T Consensus 143 ~~~~~~~~eei~s~~-il~~~~l~G~~~~~i~~~sl~~il~~~~vl~~a 190 (764)
T TIGR02865 143 RTKHLLTNEEIVSLI-ILIASVLTGLRGLSIWGLSLENIIARLAVLLIS 190 (764)
T ss_pred cccCCCcHhHHHHHH-HHHHHHHHccCCCEEEeeEHHHHHHHHHHHHHH
Confidence 455567665444444 445566666666553332333444444444433
No 55
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=29.88 E-value=3.6e+02 Score=28.47 Aligned_cols=12 Identities=33% Similarity=0.348 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 043373 683 LGVLISTLALFL 694 (809)
Q Consensus 683 ~~~~~~~~~~~~ 694 (809)
+--++..++--+
T Consensus 211 ~~~~l~~~a~~l 222 (284)
T PF12805_consen 211 FQRLLEQLAQAL 222 (284)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 56
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=29.38 E-value=22 Score=28.62 Aligned_cols=36 Identities=36% Similarity=0.368 Sum_probs=21.1
Q ss_pred HHHHHhhcCCCCCchhhhhhhhcccccccccccccc
Q 043373 147 EIVEEWNSGGEDGKIGELVEGLSREGKRKLCGVLKD 182 (809)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (809)
|++++-|+-...=|-|.=.++.+.+.-|+||||++|
T Consensus 4 e~I~~IN~~~~tWkAG~NF~~~~~~~ik~LlGv~~~ 39 (41)
T PF08127_consen 4 EFIDYINSKNTTWKAGRNFENTSIEYIKRLLGVLPD 39 (41)
T ss_dssp HHHHHHHHCT-SEEE----SSB-HHHHHHCS-B-TT
T ss_pred HHHHHHHcCCCcccCCCCCCCCCHHHHHHHcCCCCC
Confidence 456666665555555555699999999999999876
No 57
>COG4243 Predicted membrane protein [Function unknown]
Probab=28.90 E-value=2.4e+02 Score=28.93 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 043373 585 AIDAGLGVLVFTMFALYDAGKILKRSDSDDHHKASAHLYWDLSAPTL 631 (809)
Q Consensus 585 LIIS~LGVLVFSGYIAYDTQrIIkrySpDDYI~AALSLYLDFINLFL 631 (809)
.....+...+|+.|++|- +=++.+|+.+|--+.-++.
T Consensus 101 l~v~~~~g~~f~~yLiY~----------e~~~~~alC~YCtv~h~~~ 137 (156)
T COG4243 101 LLVGSLVGSAFVPYLIYL----------ELFVIGALCLYCTVAHLSI 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHhhHhHHHHHHHHHH
Confidence 444555667899999993 2356677777766655544
No 58
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.20 E-value=1.6e+02 Score=32.16 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHH
Q 043373 526 ALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQIF-NRGPLITAIDAGL 590 (809)
Q Consensus 526 AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLINIF-~~S~lLsLIIS~L 590 (809)
+.+.|..++ .-+-+.+ ++.-.|....++|-- +++=+++.|.+++| .....+..+++.+
T Consensus 148 ~~~gsl~iy--~L~nlm~----~~nv~f~~~aSVlGY-cLLPlvvlS~v~i~~~~~g~vg~il~~~ 206 (249)
T KOG3103|consen 148 SLLGSLSIY--FLLNLMS----NKNVSFGCVASVLGY-CLLPLVVLSFVNIFVGLQGTVGYILSAL 206 (249)
T ss_pred HHHHHHHHH--HHHHHHh----hcCcceeeehHHHHH-HHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 444555566 3333322 455566667777777 77778888888887 3333555555544
No 59
>MTH00145 CYTB cytochrome b; Provisional
Probab=28.03 E-value=1e+02 Score=34.76 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcC-----CCCCCeEEEeeecCCCcchhhHHHHHHHhhhheee
Q 043373 623 YWDLSAPTLWCSHG-----PAPPPVWVTTRYISDGVELALFNVAIAAFGVVLAD 671 (809)
Q Consensus 623 YLDFINLFLyIL~G-----~~~~~~~~t~r~~~dgv~l~~~~~~~~~~~~~~~~ 671 (809)
.+=|+-+|+++++| ++.+..|++ |+-+-+...+.|-.|-+|-.
T Consensus 89 s~~f~~~~lH~~r~~~~gsy~~~~~W~~------Gv~l~~l~~~~af~GYvLpw 136 (379)
T MTH00145 89 SFFFICIYLHIGRGLYYGSYLMQHTWNI------GVTLLLLSMGTAFLGYVLPW 136 (379)
T ss_pred HHHHHHHHHHHHHHHHcccccCchHHHH------hHHHHHHHHHHHHHhhccCc
Confidence 33455666777665 566667887 99999999999999988854
No 60
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=27.68 E-value=4.4e+02 Score=29.44 Aligned_cols=25 Identities=4% Similarity=-0.024 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043373 581 PLITAIDAGLGVLVFTMFALYDAGKI 606 (809)
Q Consensus 581 ~lLsLIIS~LGVLVFSGYIAYDTQrI 606 (809)
...-.+++...-..+.+|++.- |++
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G-~r~ 170 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLG-QRA 170 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHc-chh
Confidence 3455667777778888888763 554
No 61
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=27.21 E-value=4.1e+02 Score=30.89 Aligned_cols=11 Identities=18% Similarity=-0.342 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q 043373 434 SVHLGVHLLSG 444 (809)
Q Consensus 434 YgILALQLLIT 444 (809)
|++|.++|-+.
T Consensus 300 YgiLFI~LTF~ 310 (430)
T PF06123_consen 300 YGILFIGLTFL 310 (430)
T ss_pred HHHHHHHHHHH
Confidence 99999876544
No 62
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=27.18 E-value=35 Score=28.50 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=20.9
Q ss_pred CCCchhhhhhhhhhhccc----CcchHHHHHhh
Q 043373 277 DGISKEELVTDIRHFWEG----ENNTIAKFLKS 305 (809)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 305 (809)
+++||+||+.-++.-|.. |+.+|+.|+-.
T Consensus 19 ~~~sK~qLa~~V~kHF~s~~v~E~evI~~Fly~ 51 (53)
T PF13867_consen 19 PRSSKEQLANAVRKHFNSQPVDENEVIANFLYK 51 (53)
T ss_dssp SS--HHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 499999999988755553 77888888754
No 63
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=27.02 E-value=1.2e+02 Score=33.65 Aligned_cols=59 Identities=34% Similarity=0.509 Sum_probs=41.3
Q ss_pred ccCchhhhhHHHHHH---hcCCHHHHhhHHHHHHHhhcCCCCCchhhhhhhhccccccccccccccC
Q 043373 120 GRLSEEEKIRIFEIL---MGLSEEEKRKLSEIVEEWNSGGEDGKIGELVEGLSREGKRKLCGVLKDL 183 (809)
Q Consensus 120 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (809)
|--+||+|-.||+-| .|..+++-|+-++-.++|-.|.. .-++++-++.+ ..+-+.|+|+
T Consensus 117 GY~Pee~~~~IF~Alc~a~g~Dp~qyr~dA~~l~~~A~~~s---~~~l~~~l~~~--~~l~~~l~~I 178 (283)
T PLN00047 117 GYPSDEDRDAIFKAYIKALGEDPEQYRKDAAKLEEWARSQT---GSSLVDFSSKE--GEIEGILKDI 178 (283)
T ss_pred cCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---HHHHHHHHhcc--hHHHHHHHHH
Confidence 555788999999987 58999999999999999987532 34555555544 2333445554
No 64
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=26.90 E-value=5.9e+02 Score=26.95 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043373 432 KVSVHLGVHLLSGIVAYAS 450 (809)
Q Consensus 432 KVYgILALQLLITAAVAal 450 (809)
|+=.-+..++.+|++....
T Consensus 34 ~~~~a~gmGlavt~Vl~~s 52 (202)
T PRK02830 34 KVSTAFGLGIAVIVVLTIT 52 (202)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3334455566666555443
No 65
>MTH00224 CYTB cytochrome b; Provisional
Probab=26.29 E-value=1e+02 Score=34.79 Aligned_cols=43 Identities=26% Similarity=0.228 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcC-----CCCCCeEEEeeecCCCcchhhHHHHHHHhhhheee
Q 043373 623 YWDLSAPTLWCSHG-----PAPPPVWVTTRYISDGVELALFNVAIAAFGVVLAD 671 (809)
Q Consensus 623 YLDFINLFLyIL~G-----~~~~~~~~t~r~~~dgv~l~~~~~~~~~~~~~~~~ 671 (809)
++=|+-+|+++++| ++.+..|++ |+-+.+...+.|-.|-+|-.
T Consensus 89 s~~f~~~~lH~~R~~~~gsy~~~~~W~~------Gv~l~~l~~~~af~GY~Lpw 136 (379)
T MTH00224 89 SMFFLFIYLHVGRGLYYGSFNLSETWNI------GVILFILTMATAFLGYVLPW 136 (379)
T ss_pred HHHHHHHHHHHHHHHHHccccCHHHHHH------hHHHHHHHHHHHHeEeeecc
Confidence 34455677777666 666667887 99999999998888888754
No 66
>PTZ00359 hypothetical protein; Provisional
Probab=25.97 E-value=1.2e+03 Score=27.74 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=32.7
Q ss_pred cCccccCCchHHHHHHHHHHHHHHHH--HH----hc----chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043373 549 DDGDLSCFRPSNYSLSMTIAFLVSFL--QI----FN----RGPLITAIDAGLGVLVFTMFALYDAGK 605 (809)
Q Consensus 549 TKrDFT~LGGfLFmLGLIgLIIASLI--NI----F~----~S~lLsLIIS~LGVLVFSGYIAYDTQr 605 (809)
++.+.+.++.+.+. ++-.+-.++++ .+ |. .+...-.+++++-++.|.+|+ |.-|.
T Consensus 141 ~~~~~r~Y~a~afT-~lQllAmvGFIIca~K~hCFGkCmt~~r~vFYv~a~Iy~l~~~~yi-~~l~~ 205 (443)
T PTZ00359 141 TYAGHRVYGAMGFT-GLELLAMFGFIICAMKTHCFGGCMTLNKKVFYTFAFIYMLVFAAHA-YTLGE 205 (443)
T ss_pred cccceeeeeehHHH-HHHHHHHHHHHHHHhhccccccccccccEEEeeHHHHHHHHHHHHH-HHHHH
Confidence 34577788888887 65544444433 22 31 233444556888888898887 44443
No 67
>KOG1762 consensus 60s acidic ribosomal protein P1 [Translation, ribosomal structure and biogenesis]
Probab=25.95 E-value=59 Score=31.73 Aligned_cols=51 Identities=35% Similarity=0.371 Sum_probs=22.2
Q ss_pred cCCCchhhHHhhhcCCCCCCCCcchhhhccccC---CCCChhHHHHHhh-cCCcccc
Q 043373 53 SYNFPEKIIATTRKRGIRPPNIKQSEVAGAAAG---AGEDEEEEEEKKE-SGEPVED 105 (809)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~ 105 (809)
.-|.++- |-+-.+.|--|++-. .-.+|++++ |.+.|+++|.||| |+|..+|
T Consensus 53 ~vni~~l-i~n~gag~~a~a~~~-~~~~~aa~~~~aA~~~Ekk~eak~EeseesddD 107 (114)
T KOG1762|consen 53 GVNIKEL-ICNVGAGGGALAAGA-AAAGGAAAAGGAAAAEEKKEEAKKEESEESDDD 107 (114)
T ss_pred cCChHHH-HHhcccCCccCCCcc-ccccccccccccccchHHHHHhhhhhhcccccc
Confidence 3444443 344445455555544 222222222 2233444444444 6666655
No 68
>cd08796 Death_IRAK-M Death domain of Interleukin 1 Receptor Associated Kinase-M. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase M (IRAK-M). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors(TLRs), nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK-M, also called IRAK-3, is an inactive kinase present only in macrophages in an inducible manner. It is a negative regulator of TLR signaling and it contributes to the attenuation of NF-kB activation. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=25.46 E-value=1.5e+02 Score=27.52 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=44.3
Q ss_pred ccCHHHHHhHhhhcccCchhhhhHHHHHHhcCCHHHHhhH-----------HHHHHHhhcCCCCCchhhhhhhhccccc
Q 043373 106 RLSEEEKKKICEFAGRLSEEEKIRIFEILMGLSEEEKRKL-----------SEIVEEWNSGGEDGKIGELVEGLSREGK 173 (809)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (809)
.+...++++.|..--.+.+++.-+-+--.+.++..+-|++ .|....| |--.+.++||++-|.+.|-
T Consensus 5 ~lP~~v~~~lc~~LDs~~~~~~W~~lA~~i~~~~~~vr~ie~~~~~G~SPT~eLL~~W--g~~n~TV~eL~~~L~~~~l 81 (89)
T cd08796 5 DLPPVLLGSLCALLDSGVGGLGWRTLAERLSSSWLEVRHIEKYVVQGKSGTRELLWSW--AQKNKTVGDLLQVLDEMGH 81 (89)
T ss_pred hCCHHHHHHHHHHhcCCCccccHHHHHHHHhccHHHHHHHHHHHHcCCCcHHHHHHHH--HccCCCHHHHHHHHHHcCc
Confidence 3567788889988887764444444444444555554443 3566677 6677899999999988763
No 69
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=25.39 E-value=6.2e+02 Score=26.52 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043373 431 KKVSVHLGVHLLSGIVAYA 449 (809)
Q Consensus 431 RKVYgILALQLLITAAVAa 449 (809)
+|+-.-++.++.+|++...
T Consensus 32 ~~~~~a~gmGlav~~V~~~ 50 (190)
T TIGR01943 32 KKLETAIGMGLAVTFVMTL 50 (190)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 4555556666666665544
No 70
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=24.62 E-value=6.1e+02 Score=29.07 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=16.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhHHhh
Q 043373 490 KYDSTAGLLVSAVHTAFGVFWADRNLA 516 (809)
Q Consensus 490 K~PsNAgLILL~LFT~~mGvTLG~I~a 516 (809)
+.|.. -+++..+++..|+.++.+.+
T Consensus 75 k~~~~--~ilf~tiGLiiGLlia~l~~ 99 (356)
T COG4956 75 KLPVT--TILFGTIGLIIGLLIAVLLS 99 (356)
T ss_pred hcCHH--HHHHHHHHHHHHHHHHHHHh
Confidence 45544 57778888888877766543
No 71
>PRK03735 cytochrome b6; Provisional
Probab=24.51 E-value=1.5e+02 Score=31.33 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCe---EEEeeecCCCcchhhHHHHHHHhhhheee
Q 043373 617 KASAHLYWDLSAPTLWCSHGPAPPPV---WVTTRYISDGVELALFNVAIAAFGVVLAD 671 (809)
Q Consensus 617 ~AALSLYLDFINLFLyIL~G~~~~~~---~~t~r~~~dgv~l~~~~~~~~~~~~~~~~ 671 (809)
.|++..-+=++-++.-+.-|+-+.|+ |++ |+-+.+...+.|-.|-+|-.
T Consensus 97 gas~~~~~~~lH~~r~~~~gsYk~pre~~W~~------Gv~l~~l~~~~af~GY~Lpw 148 (223)
T PRK03735 97 GASLVIVMMFLHTLRVFFTGGYKKPRELNWVV------GVLIFFVTVGLGFTGYLLPW 148 (223)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCceeHH------HHHHHHHHHHHHhccccCCc
Confidence 34444444444555555666667775 666 99998888888888887754
No 72
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=24.30 E-value=1.4e+03 Score=28.21 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=8.9
Q ss_pred CccchhHHHHHHhhh
Q 043373 749 GLSCIPFLVLLVSNI 763 (809)
Q Consensus 749 ~~~~~~~~~~~~~~~ 763 (809)
.--|.+-+.-++|++
T Consensus 506 ~~~~~k~i~~~ls~~ 520 (764)
T TIGR02865 506 RGECEKKIAPIISEV 520 (764)
T ss_pred ccchHHHHHHHHHHH
Confidence 344666666666665
No 73
>PF02109 DAD: DAD family; InterPro: IPR003038 Members of this family are thought to be integral membrane proteins. Some members of this family have been shown to cause apoptosis if mutated [], these proteins are known as DAD for defender against death. The family also includes the epsilon subunit of the oligosaccharyltransferase that is involved in N-linked glycosylation [].; GO: 0016021 integral to membrane
Probab=23.86 E-value=1.5e+02 Score=28.83 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=35.1
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH---h---hcCCC----chhHHHHHHHHHHHHH
Q 043373 574 LQIFNRGPLITAIDAGLGVLVFTMFALYDAGKI---L---KRSDS----DDHHKASAHLYWDLSA 628 (809)
Q Consensus 574 INIF~~S~lLsLIIS~LGVLVFSGYIAYDTQrI---I---krySp----DDYI~AALSLYLDFIN 628 (809)
+.-||.+..+.-+++++|-.+.++-+ -.|.- . +..++ .|||.|++-||+=.+|
T Consensus 47 vgtFPFNaFLsGf~s~VG~fVL~vsL--R~Q~~p~n~~~f~~is~eRafaDfv~~slvLh~~v~n 109 (112)
T PF02109_consen 47 VGTFPFNAFLSGFISCVGQFVLTVSL--RIQLNPENKSEFPGISPERAFADFVFCSLVLHFVVFN 109 (112)
T ss_pred ecCCchHHHHHHHHHHHHHHHHHHHH--HHhcccccccccCCCChhhhhHHHHHHHHHHHHheee
Confidence 33466677788888888877776444 44432 1 12233 5899999999987665
No 74
>PF03323 GerA: Bacillus/Clostridium GerA spore germination protein; InterPro: IPR004995 Dormant Bacillus subtilis spores germinate in the presence of particular nutrients called germinants. The spores are thought to recognise germinants through receptor proteins encoded by the gerA family of operons, which includes gerA, gerB, and gerK. The GerA proteins are predicted to be membrane associated.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=23.37 E-value=4e+02 Score=30.99 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhcCh
Q 043373 441 LLSGIVAYASMKMCP 455 (809)
Q Consensus 441 LLITAAVAal~~fsp 455 (809)
+.+.+.=.++..|++
T Consensus 288 ~~lp~lYiAl~~fh~ 302 (470)
T PF03323_consen 288 IFLPALYIALTTFHP 302 (470)
T ss_pred HHHHHHHHHHHHhCc
Confidence 333333333444555
No 75
>PF09775 Keratin_assoc: Keratinocyte-associated protein 2; InterPro: IPR018614 Members of this family comprise various keratinocyte-associated proteins. The function of these proteins is not known.
Probab=23.29 E-value=3.9e+02 Score=26.90 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 043373 591 GVLVFTMFALYDAGKILK 608 (809)
Q Consensus 591 GVLVFSGYIAYDTQrIIk 608 (809)
-.++||...+|-.++|-.
T Consensus 96 Tc~lFS~~~LYylnkiS~ 113 (131)
T PF09775_consen 96 TCFLFSLVALYYLNKISQ 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346788888888888753
No 76
>PRK11715 inner membrane protein; Provisional
Probab=22.97 E-value=6.2e+02 Score=29.54 Aligned_cols=12 Identities=17% Similarity=-0.089 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHH
Q 043373 434 SVHLGVHLLSGI 445 (809)
Q Consensus 434 YgILALQLLITA 445 (809)
|++|.++|-+.+
T Consensus 306 YgiLFI~LTF~~ 317 (436)
T PRK11715 306 YAILFIALTFAA 317 (436)
T ss_pred HHHHHHHHHHHH
Confidence 999998765543
No 77
>COG4393 Predicted membrane protein [Function unknown]
Probab=22.78 E-value=1.2e+03 Score=27.00 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhhHHHHHHHHHHHHHhh
Q 043373 432 KVSVHLGVHLLSGIVAYASMKMCPPKTAAFKQNYTHFLSPILFLIPTCK 480 (809)
Q Consensus 432 KVYgILALQLLITAAVAal~~fspp~~~FL~~NpWL~IvsLILLIaL~~ 480 (809)
|.+..+.++++...+..++..+.|...++...--..++.++.+.+..++
T Consensus 30 ~~~~vvwl~~L~~~~g~~~~~y~pKsq~~~l~l~~v~i~sLLlf~~sqf 78 (405)
T COG4393 30 KSFFVVWLGFLFGYFGFFIAAYFPKSQNLILNLDFVFIGSLLLFFISQF 78 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHHHHH
Confidence 3444455555655555555555554444332211234455555555544
No 78
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=22.67 E-value=1.6e+03 Score=28.13 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCeEEE
Q 043373 588 AGLGVLVFTMFALYDAGKILKRSDSDDHHKASAHLYWDLSAPTLWCSHGPAPPPVWVT 645 (809)
Q Consensus 588 S~LGVLVFSGYIAYDTQrIIkrySpDDYI~AALSLYLDFINLFLyIL~G~~~~~~~~t 645 (809)
..+.+++.+++-.|=.+++.-....++|+-..+-...|. +.......|+ -|.++.
T Consensus 386 ~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~-~~i~~~~ggs--~~~~i~ 440 (727)
T COG1033 386 VLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKAL-DFIEKEFGGS--DPITIV 440 (727)
T ss_pred HHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHH-HHHHHHcCCC--ceEEEE
Confidence 445567788888888887754433344544444444443 3334455554 677766
No 79
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=22.61 E-value=54 Score=28.54 Aligned_cols=30 Identities=43% Similarity=0.632 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcHHHHhhhhhhhhccCCcc
Q 043373 203 TKKLIELVESLSEEGLKRVGKHVLESGGVE 232 (809)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (809)
.-|+..|-.|||++.++|.-.+++.|-||.
T Consensus 10 msk~~~L~~SLsd~~i~~Lr~evl~seGV~ 39 (57)
T PF11961_consen 10 MSKLVNLWQSLSDEEIARLREEVLRSEGVR 39 (57)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHhhhHHHH
Confidence 457888999999999999999999999985
No 80
>PF14851 FAM176: FAM176 family
Probab=22.34 E-value=77 Score=32.08 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=8.7
Q ss_pred HHHHhhcCCCCC
Q 043373 148 IVEEWNSGGEDG 159 (809)
Q Consensus 148 ~~~~~~~~~~~~ 159 (809)
|-|=|-.|+.|-
T Consensus 132 irEIW~n~~~d~ 143 (153)
T PF14851_consen 132 IREIWMNGQPDI 143 (153)
T ss_pred HHHHHHhcCCCC
Confidence 445599998884
No 81
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=22.09 E-value=1.9e+02 Score=34.47 Aligned_cols=114 Identities=30% Similarity=0.383 Sum_probs=59.0
Q ss_pred cCCHHHHhhHHHHHHHhhcCCCCCchhhhhhhhccccccccccccccCCCCchHHHHHHHhh---------------cCh
Q 043373 136 GLSEEEKRKLSEIVEEWNSGGEDGKIGELVEGLSREGKRKLCGVLKDLSDGDKEKITELLEG---------------LNE 200 (809)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 200 (809)
+|||+|.|...+|.+--- .=-+||+++|.+...-++|.-+-+ +.||...+...++..- -+|
T Consensus 393 ~Lse~es~r~~~iid~a~---~lE~IgDiie~l~~~~~kk~~~~~-~fse~~~~el~~l~~~~~~n~~~a~~~l~~~D~~ 468 (533)
T COG1283 393 GLSEEESRRWAEIIDAAI---NLEHIGDIIERLLELADKKIANGR-AFSEDGLEELDALFALTLENLRLAISVLVTGDLE 468 (533)
T ss_pred cCCHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 578888887777765322 123677777776554444443332 3444433333332211 111
Q ss_pred H------HHHHHHHHHHHhcHHHHhhhhhhhhccCCccccchhHHHHhhhhchhhhhhhhhcchhHHH
Q 043373 201 K------QTKKLIELVESLSEEGLKRVGKHVLESGGVESNKAFELLLIDGLIKEDRKRVRNFACSVAI 262 (809)
Q Consensus 201 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (809)
+ +-+.+.++-..++++-++|.-. | .+|-++ ..+.+| |-.|-||+-+.+||+|-
T Consensus 469 ~ar~lv~~k~~~r~~e~~~~k~H~~Rl~~-----g-~~s~~t-~~l~lD--ii~dlkrIn~h~~siA~ 527 (533)
T COG1283 469 LARRLVERKKRVRRLERRSSKRHLDRLRD-----G-AASVET-SSLHLD--ILRDLKRINSHIASVAY 527 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C-cchhhh-chhHHH--HHHHHHHHHHHHHHHHH
Confidence 1 1223333444555666666433 3 333332 344555 45688999999999874
No 82
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=22.03 E-value=9.6e+02 Score=25.44 Aligned_cols=66 Identities=18% Similarity=0.038 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhHHHHHH--HHHHHHHHHH
Q 043373 564 SMTIAFLVSFLQIFNR--G-PLITAIDAGLGVLVFTMFALYDAGKILKRSDS-DDHHKASAH--LYWDLSAPTL 631 (809)
Q Consensus 564 GLIgLIIASLINIF~~--S-~lLsLIIS~LGVLVFSGYIAYDTQrIIkrySp-DDYI~AALS--LYLDFINLFL 631 (809)
++.++.+..+++++.. + ..+-.+ -+.-+++|.++.+|=.|. +++++. .-+.+.++. +-.-++|+|+
T Consensus 84 ~~~G~~lg~i~~~y~~~~~~~iV~~A-~~~Ta~iF~~ls~~a~~t-k~Dfs~lg~~L~~~l~~li~~~l~~~F~ 155 (219)
T PRK10447 84 GFLGYILGPILNTYLSAGMGDVIALA-LGGTALVFFCCSAYVLTT-RKDMSFLGGMLMAGIVVVLIGMVANIFL 155 (219)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555421 1 222111 223456777788777554 222221 223444443 5566777775
No 83
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=21.71 E-value=1.9e+02 Score=24.42 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=43.3
Q ss_pred ccCCCCchHHHHHHHhhcChHHHHHHHHHHHHhcHHHHhhhhhhhhccCCccccchhHHHHhhhhchhhhhhhhhcch
Q 043373 181 KDLSDGDKEKITELLEGLNEKQTKKLIELVESLSEEGLKRVGKHVLESGGVESNKAFELLLIDGLIKEDRKRVRNFAC 258 (809)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (809)
-|+..-+.+.+..++.|++++..+++++.-. +.|+.++ .-|+.-+.|+=++..+|+.++.|
T Consensus 8 invNta~~~~L~~~ipgig~~~a~~Il~~R~---------------~~g~~~s--~~dL~~v~gi~~~~~~~i~~~~~ 68 (69)
T TIGR00426 8 VNINTATAEELQRAMNGVGLKKAEAIVSYRE---------------EYGPFKT--VEDLKQVPGIGNSLVEKNLAVIT 68 (69)
T ss_pred eECcCCCHHHHHhHCCCCCHHHHHHHHHHHH---------------HcCCcCC--HHHHHcCCCCCHHHHHHHHhhcc
Confidence 4778888888888889999999998887653 2334443 23445567877787788877754
No 84
>MTH00053 CYTB cytochrome b; Provisional
Probab=21.60 E-value=2.6e+02 Score=31.83 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcC-----CCCCCeEEEeeecCCCcchhhHHHHHHHhhhhee
Q 043373 625 DLSAPTLWCSHG-----PAPPPVWVTTRYISDGVELALFNVAIAAFGVVLA 670 (809)
Q Consensus 625 DFINLFLyIL~G-----~~~~~~~~t~r~~~dgv~l~~~~~~~~~~~~~~~ 670 (809)
=|+-+|+++.+| ++.+..|++ |+-+-+...+.|-.|-||-
T Consensus 91 ~f~~~ylHi~R~~~~gsy~~~~~W~~------Gv~l~~l~m~~af~GYvLp 135 (381)
T MTH00053 91 FFLCVYFHIGRGIYYGSYTKIIVWNV------GVLIFLLMILTAFIGYVLP 135 (381)
T ss_pred HHHHHHHHHHHHHHHcccCCchHHHh------hHHHHHHHHHHHHHHhccc
Confidence 345666666554 445567877 9999999999999998874
No 85
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=21.40 E-value=1.5e+03 Score=27.33 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHHHh
Q 043373 522 IMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQIF 577 (809)
Q Consensus 522 IVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLINIF 577 (809)
.+..|+..++.++ +|.++|-+ .+++|-.+....+-+ |++..++++++.++
T Consensus 187 ~~~aa~~tg~~~v--~gvsA~~l---Lr~r~~~~~r~~l~i-~l~~~li~~~~~~~ 236 (514)
T PRK15035 187 TVMAGYVTGAMFI--MAISAWYL---LRGRERDVALRSFAI-GSVFGTLAIIGTLQ 236 (514)
T ss_pred HHHHHHHHHHHHH--HHHHHHHH---HhcCchHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4445555555555 88888755 246676677777777 77777777776655
No 86
>CHL00070 petB cytochrome b6
Probab=21.39 E-value=2.6e+02 Score=29.54 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 043373 556 FRPSNYSLSMTIAFLVSFLQIFNRGPLITAIDAGLGVLVFTMFALYDAGK--ILKRSDSDDHHKASAHLYWDLSAPTLWC 633 (809)
Q Consensus 556 LGGfLFmLGLIgLIIASLINIF~~S~lLsLIIS~LGVLVFSGYIAYDTQr--IIkrySpDDYI~AALSLYLDFINLFLyI 633 (809)
+|+++.. .+++.++.|++-.+...+....+++.+ .++..|+.- +++. --.-.|++..-+=++-+|.-+
T Consensus 36 ~G~ll~~-~~~iqiiTGi~L~~~Y~p~~~~Af~Sv------~~I~~ev~~Gwl~R~---~H~~gas~~~~~~~lH~~r~~ 105 (215)
T CHL00070 36 LGGITLT-CFLVQVATGFAMTFYYRPTVTEAFASV------QYIMTEVNFGWLIRS---VHRWSASMMVLMMILHVFRVY 105 (215)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHcccccHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 666667777665553333333333332 112222210 0110 112345555555555666666
Q ss_pred hcCCCCCCe---EEEeeecCCCcchhhHHHHHHHhhhhee
Q 043373 634 SHGPAPPPV---WVTTRYISDGVELALFNVAIAAFGVVLA 670 (809)
Q Consensus 634 L~G~~~~~~---~~t~r~~~dgv~l~~~~~~~~~~~~~~~ 670 (809)
.-|+=+.|+ |++ |+-|-+.-.+.|-.|-+|-
T Consensus 106 ~~gsYk~pre~~W~~------Gv~l~~l~m~~af~GY~Lp 139 (215)
T CHL00070 106 LTGGFKKPRELTWVT------GVVLAVLTVSFGVTGYSLP 139 (215)
T ss_pred HHhhhcCCcccCcHH------HHHHHHHHHHHHHccccCC
Confidence 777777775 666 8888888888888887764
No 87
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=21.31 E-value=68 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.581 Sum_probs=25.6
Q ss_pred hhHHHHHHHhhcC-CCCCchhhhhhhhccccccccc
Q 043373 143 RKLSEIVEEWNSG-GEDGKIGELVEGLSREGKRKLC 177 (809)
Q Consensus 143 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 177 (809)
....++...|... |.+..++.|++.|.+-|+..+.
T Consensus 41 ~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~ 76 (83)
T PF00531_consen 41 EQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLA 76 (83)
T ss_dssp HHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHH
Confidence 3445677888776 8888888888888877765443
No 88
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=20.69 E-value=1.2e+03 Score=28.55 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHhhhHHHHHHHHHHHHHhhhhchhhhhcccchhhHHHHHHHHHHHHHHHHhHHhh
Q 043373 437 LGVHLLSGIVAYASMKMCPPKTAAFKQNYTHFLSPILFLIPTCKAFKKEISKQKYDSTAGLLVSAVHTAFGVFWADRNLA 516 (809)
Q Consensus 437 LALQLLITAAVAal~~fspp~~~FL~~NpWL~IvsLILLIaL~~afsk~i~RRK~PsNAgLILL~LFT~~mGvTLG~I~a 516 (809)
+++.+.++.+++...-...+ +|..+..+++ .+..+.........=+.+-+.|..+|..+.
T Consensus 389 ~ala~~~a~~i~~~l~l~~g--------yWi~lTv~~V------------~qP~~~~T~~R~~~Ri~GTl~G~llg~~l~ 448 (701)
T TIGR01667 389 LSLVVMLGYAILMGTALHLG--------YWILLTTLFV------------CQPNYGATRLRLVQRIIGTVVGLVIGVALH 448 (701)
T ss_pred HHHHHHHHHHHHHHhCCCcc--------hHHHHHHHHH------------hCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccChhHHHHHHHHHHHHHHHhhhhhhhheecccCccccCCchHHHHHHHHHHHHHHHHH----HhcchhHHHHHHHHHHH
Q 043373 517 NSNGRIMLAALLTTLYILFHVSLGAVFEVVVKDDGDLSCFRPSNYSLSMTIAFLVSFLQ----IFNRGPLITAIDAGLGV 592 (809)
Q Consensus 517 fYdpsIVI~AFlITAaIF~~ISLTaYAffA~QTKrDFT~LGGfLFmLGLIgLIIASLIN----IF~~S~lLsLIIS~LGV 592 (809)
...+.......++....+ +... ..++++.....++.. .+++.+.++. -+....+++.+++++-+
T Consensus 449 ~l~p~~~~~l~l~v~~~~--~~~~-------~~~~~Y~~a~~fiT~---~vll~~~l~~~~~~~~a~~Rl~DTliG~~iA 516 (701)
T TIGR01667 449 FLIPSLEGQLTLMVITGV--AFFA-------FRSKNYGWATVFITL---LVLLCFNLLGLDGEQYILPRLIDTLIGCLIA 516 (701)
T ss_pred HHcCcHHHHHHHHHHHHH--HHHH-------HHHhhHHHHHHHHHH---HHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 043373 593 LVFTMFA 599 (809)
Q Consensus 593 LVFSGYI 599 (809)
++.+.++
T Consensus 517 ~~~~~ll 523 (701)
T TIGR01667 517 WGAVSYL 523 (701)
T ss_pred HHHHHHc
No 89
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=20.57 E-value=1.1e+03 Score=28.47 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 043373 564 SMTIAFLVSFLQIFNRGPLITAIDAGLGVLVFTMFA 599 (809)
Q Consensus 564 GLIgLIIASLINIF~~S~lLsLIIS~LGVLVFSGYI 599 (809)
.+...+..+++++|........++-.+++-+++.|-
T Consensus 132 ~l~f~laaafLSaFLsnttvtAvmIpVavgfy~~yh 167 (515)
T TIGR00774 132 SLAFCFAAAFLSAFLDALTVVAVVISVAVGFYGIYH 167 (515)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHhh
Confidence 344466778888886554444444445555555553
No 90
>MTH00022 CYTB cytochrome b; Validated
Probab=20.42 E-value=3.1e+02 Score=31.13 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=27.8
Q ss_pred HHHHHHHHhcC-----CCCCCeEEEeeecCCCcchhhHHHHHHHhhhhee
Q 043373 626 LSAPTLWCSHG-----PAPPPVWVTTRYISDGVELALFNVAIAAFGVVLA 670 (809)
Q Consensus 626 FINLFLyIL~G-----~~~~~~~~t~r~~~dgv~l~~~~~~~~~~~~~~~ 670 (809)
|+-+|+++++| ++.+..|++ |+-+-+...+.|-.|-+|-
T Consensus 90 f~~~~lHi~r~~~~gsy~~~~~W~~------Gv~l~~l~~~~af~GyvLp 133 (379)
T MTH00022 90 FLCLYIHIGRGLYYGGYLKFHVWNV------GVVIFLLTMATAFMGYVLP 133 (379)
T ss_pred HHHHHHHHHHHHHHHHccCcchhhh------cHHHHHHHHHHHHheeeec
Confidence 44455555443 344557887 9999999999998888774
No 91
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=20.02 E-value=1.8e+03 Score=27.76 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=26.1
Q ss_pred hHHHhhhh-hccccccccccCcchhhhHhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 043373 390 LEEEATKI-LTLKDLANCFLNKDLEKYIKKASQNLSPRLEFIKKVSVHLGVHLLSG 444 (809)
Q Consensus 390 ~~~eat~~-~~lk~~a~cf~~~dfskyI~~as~~~sIR~gFIRKVYgILALQLLIT 444 (809)
+.+||... +.|+.+++ |.+++. +......++.=++++++......+++++-
T Consensus 240 t~~eA~~la~~l~~GaL---P~~~~~-~~~~~VgptLG~~~~~~~~~A~ii~~~lV 291 (758)
T PRK13023 240 DLQAANNMAVVLRSGAL---PQAVTV-LEERTIASALGEDYASAAVLAALLAALVV 291 (758)
T ss_pred CHHHHHHHHHHHhcCCC---CCCeee-eeeeccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566554 44555663 333332 22233456666777776655555544443
Done!