Query 043373
Match_columns 809
No_of_seqs 169 out of 1041
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of5_H Leucine-rich repeat and 44.5 32 0.0011 31.0 5.5 87 100-191 4-104 (118)
2 3mop_A Myeloid differentiation 39.6 11 0.00037 34.4 1.6 81 107-188 7-95 (110)
3 2a9i_A IRAK-4, interleukin-1 r 31.9 52 0.0018 30.0 4.8 73 106-182 13-102 (113)
4 1rxq_A YFIT; nickel-binding, h 26.7 1.1E+02 0.0039 27.0 6.0 35 190-225 108-142 (178)
5 4gfh_A DNA topoisomerase 2; to 24.3 84 0.0029 38.5 6.0 44 105-153 1122-1167(1177)
6 1fi6_A EH domain protein REPS1 24.1 1.1E+02 0.0037 25.2 5.0 51 107-162 3-61 (92)
7 3uv4_A Second bromodomain of h 21.8 1.2E+02 0.0042 28.6 5.5 58 278-335 85-148 (158)
8 3aqp_A Probable secdf protein- 21.4 9.7E+02 0.033 27.5 16.2 29 423-451 264-292 (741)
9 3fkm_X Signaling protein; brom 20.9 98 0.0033 29.4 4.6 69 279-348 79-165 (166)
10 2ou3_A Tellurite resistance pr 20.4 3E+02 0.01 25.3 7.7 33 115-147 39-73 (161)
No 1
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=44.50 E-value=32 Score=30.99 Aligned_cols=87 Identities=16% Similarity=0.355 Sum_probs=55.3
Q ss_pred CCccccccCHHHHHhHhhhcccCchhhhhHHHHHHhcCCHHHHh------------hHHHHHHHhhc--CCCCCchhhhh
Q 043373 100 GEPVEDRLSEEEKKKICEFAGRLSEEEKIRIFEILMGLSEEEKR------------KLSEIVEEWNS--GGEDGKIGELV 165 (809)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~~~~~~~ 165 (809)
|.|-...++++.-..||+-.|+ .-+-+-.-+|+|+.+-+ ..-++...|-. ||.+..++.|+
T Consensus 4 ~~~~~~~lt~~~l~~ia~~lg~-----dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L~ 78 (118)
T 2of5_H 4 GDAETGFLTQSNLLSVAGRLGL-----DWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLLV 78 (118)
T ss_dssp SCTTTCCCCHHHHHHHHHTCCT-----THHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHHH
T ss_pred CCCCcCCCCHHHHHHHHHHHhh-----HHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 4555667888888888887765 23344455788875533 44567778854 34578999999
Q ss_pred hhhccccccccccccccCCCCchHHH
Q 043373 166 EGLSREGKRKLCGVLKDLSDGDKEKI 191 (809)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (809)
+.|.+-|++.+.-.+.+.-+.++.|.
T Consensus 79 ~aL~~~~r~diae~l~~~ie~~~~~y 104 (118)
T 2of5_H 79 QALEQSDRQDVAEEVRAVLELGRRKY 104 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCC----
T ss_pred HHHHHcCcHHHHHHHHHHHhhhhHHH
Confidence 99998887766544444444444443
No 2
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=39.61 E-value=11 Score=34.37 Aligned_cols=81 Identities=15% Similarity=0.248 Sum_probs=50.5
Q ss_pred cCHHHHHhHhhhcccCch-hhhhHHHHHHhcCCHHH-------HhhHHHHHHHhhcCCCCCchhhhhhhhcccccccccc
Q 043373 107 LSEEEKKKICEFAGRLSE-EEKIRIFEILMGLSEEE-------KRKLSEIVEEWNSGGEDGKIGELVEGLSREGKRKLCG 178 (809)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (809)
|+-.-++|+|.+--.-.. ...-|..--.+|++..+ +....++.+.|..- .+..+|.|++-|.+-|+...+-
T Consensus 7 L~~~~R~kL~~~LDp~~~~g~dWr~LA~~Lg~~~~~I~~fe~~~sPT~~lL~~W~~r-~~aTVg~L~~~L~~i~R~Dv~~ 85 (110)
T 3mop_A 7 LNMRVRRRLSLFLNVRTQVAADWTALAEEMDFEYLEIRQLETQADPTGRLLDAWQGR-PGASVGRLLELLTKLGRDDVLL 85 (110)
T ss_dssp SCHHHHHHHHHHHTSCCSSSCCHHHHHTTTTCCHHHHHHHTSSSSHHHHHHHHHHSS-SSCSHHHHHHHHHHHTCHHHHT
T ss_pred CCHHHHHHHHHHcCCCCCccccHHHHHHHcCCCHHHHHHHhCCCCcHHHHHHHHhcC-CCCcHHHHHHHHHHcCCHHHHH
Confidence 566677777765332211 11334444556666544 23467899999765 8899999999998888876554
Q ss_pred ccccCCCCch
Q 043373 179 VLKDLSDGDK 188 (809)
Q Consensus 179 ~~~~~~~~~~ 188 (809)
.+....+.|-
T Consensus 86 ~l~~~~e~d~ 95 (110)
T 3mop_A 86 ELGPSIEEDC 95 (110)
T ss_dssp TSHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 3
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=31.89 E-value=52 Score=29.96 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=48.5
Q ss_pred ccCHHHHHhHhhhcccCchhhhhHHHHHH------hcCCHHHHhhH-----------HHHHHHhhcCCCCCchhhhhhhh
Q 043373 106 RLSEEEKKKICEFAGRLSEEEKIRIFEIL------MGLSEEEKRKL-----------SEIVEEWNSGGEDGKIGELVEGL 168 (809)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 168 (809)
.|..-.+++.|.+--.. +.=..+.+.+ |+.|..|-|.+ .++.++|-. .+-.+|+|++-|
T Consensus 13 ~Lp~~~r~~L~~~LD~~--~~W~~La~~i~~~~~~~ky~~~~i~~~e~~~~~~~SPT~~LL~~Wg~--~~~TV~~Ll~lL 88 (113)
T 2a9i_A 13 NLNVGILRKLSDFIDPQ--EGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGLSPTCELLFDWGT--TNCTVGDLVDLL 88 (113)
T ss_dssp GCCHHHHHHHHHHHSGG--GHHHHHHHHCBCTTSSBSSCHHHHHHHHHTTTTTCCHHHHHHHHHGG--GTCBHHHHHHHH
T ss_pred hCCHHHHHHHHHHhCCc--ccHHHHHHHHcCccccCCCCHHHHHHHHHhhccCCCHHHHHHHHHcc--CCCcHHHHHHHH
Confidence 57778888888775544 1112222333 33565554443 468999954 678999999999
Q ss_pred cccccccccccccc
Q 043373 169 SREGKRKLCGVLKD 182 (809)
Q Consensus 169 ~~~~~~~~~~~~~~ 182 (809)
.+.|-..-...|+.
T Consensus 89 ~~~~l~~Aa~~L~~ 102 (113)
T 2a9i_A 89 VQIELFAPATLLLP 102 (113)
T ss_dssp HHTTCHHHHHHHCG
T ss_pred HHcccHHHHHHhch
Confidence 99888777766654
No 4
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=26.66 E-value=1.1e+02 Score=26.97 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=26.6
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHhcHHHHhhhhhhh
Q 043373 190 KITELLEGLNEKQTKKLIELVESLSEEGLKRVGKHV 225 (809)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (809)
...++++.+ ++..+++.+++++++++.+.+.+.|-
T Consensus 108 ~~~~ll~~~-~~~~~~~~~~l~~l~~~~l~~~~~~~ 142 (178)
T 1rxq_A 108 DPSGSLALL-QELHGRWTALLRTLTDQQFKRGFYHP 142 (178)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHCCHHHHTCEEECT
T ss_pred CHHHHHHHH-HHHHHHHHHHHHcCCHHHHhceeECc
Confidence 345566655 45667889999999999999988764
No 5
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=24.29 E-value=84 Score=38.54 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=32.4
Q ss_pred cccCHHHHHhHhhhcccCchhhhhHHHHHHhcCCHHH--HhhHHHHHHHhh
Q 043373 105 DRLSEEEKKKICEFAGRLSEEEKIRIFEILMGLSEEE--KRKLSEIVEEWN 153 (809)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 153 (809)
.||+.+|+.|+.+=. +|+..-.+.|...|+++ ++.|.++.++|.
T Consensus 1122 ~~LT~ee~ekL~~E~-----~e~~~ei~~L~~~s~~~lw~~DLd~~~~~~~ 1167 (1177)
T 4gfh_A 1122 WSLTKERYQKLLKQK-----QEKETELENLLKLSAKDIWNTDLKAFEVGYQ 1167 (1177)
T ss_dssp GGGSHHHHHHHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 478889998887643 34455567788888887 577888888884
No 6
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.10 E-value=1.1e+02 Score=25.16 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=30.9
Q ss_pred cCHHHHHhHhh-h-------cccCchhhhhHHHHHHhcCCHHHHhhHHHHHHHhhcCCCCCchh
Q 043373 107 LSEEEKKKICE-F-------AGRLSEEEKIRIFEILMGLSEEEKRKLSEIVEEWNSGGEDGKIG 162 (809)
Q Consensus 107 ~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (809)
+|+++++++.+ | -|.++.+|-.+++.-+ |+++++ +.+++++.... .||+|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~-g~~~~~---~~~i~~~~D~d-~dG~i~ 61 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS-KLPILE---LSHIWELSDFD-KDGALT 61 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH-SSCHHH---HHHHHHHHCTT-CSSEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc-CCCHHH---HHHHHHHHCCC-CCCCCC
Confidence 56666665543 1 4778888877777664 888765 44455554333 366654
No 7
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=21.83 E-value=1.2e+02 Score=28.56 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=44.8
Q ss_pred CCchhhhhhhhhhhc------ccCcchHHHHHhhhhhhhhHHHHHHHHHHhhhhhccHHHhhhc
Q 043373 278 GISKEELVTDIRHFW------EGENNTIAKFLKSLEVEYQDEVREIRESLVKLKESTEKEKKKI 335 (809)
Q Consensus 278 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (809)
=-|.+|++.|++.-| .+++..+.+--+.|+-.+.+.++++++.+..+.+.-.+.++.-
T Consensus 85 Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~~~~e~a 148 (158)
T 3uv4_A 85 YQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAA 148 (158)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999998776 4678889888899999999999999988888766655554443
No 8
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=21.42 E-value=9.7e+02 Score=27.52 Aligned_cols=29 Identities=7% Similarity=-0.142 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043373 423 LSPRLEFIKKVSVHLGVHLLSGIVAYASM 451 (809)
Q Consensus 423 ~sIR~gFIRKVYgILALQLLITAAVAal~ 451 (809)
++.-++.++++...+.+++++.+++.+++
T Consensus 264 ~~l~~~~~~~~~~a~~i~~~lv~l~l~l~ 292 (741)
T 3aqp_A 264 PTLGQDAIQAGIRSALIGTLAIFLLIFAY 292 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777666655443
No 9
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=20.94 E-value=98 Score=29.38 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=29.0
Q ss_pred Cchhhhhhhhhhhc------ccCcchHHHHHhhhhhhhhHHHHH------------HHHHHhhhhhccHHHhhhcccCCc
Q 043373 279 ISKEELVTDIRHFW------EGENNTIAKFLKSLEVEYQDEVRE------------IRESLVKLKESTEKEKKKINKDSV 340 (809)
Q Consensus 279 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 340 (809)
-|.++++.|+|.-| .+++..+.+.-+.|+-.+...+++ +++.+.++ +++.+...+-.+|.+
T Consensus 79 ~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~~~~~~~~~~i~~~~~~~-ee~n~~~s~~~~~~~ 157 (166)
T 3fkm_X 79 AYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYNNFILKEKKINDMLKLV-EEENIKWSKEKEDQI 157 (166)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTC-----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccccccchhhhhHHHHHHHH-HHHHHHhhhcchhhh
Confidence 47789999998876 466777777666666655555444 33333333 333344445566777
Q ss_pred cccCCcch
Q 043373 341 EGSRDGET 348 (809)
Q Consensus 341 ~~~~~~~~ 348 (809)
|-.-|+||
T Consensus 158 e~~~~~~~ 165 (166)
T 3fkm_X 158 EEIDELEN 165 (166)
T ss_dssp --------
T ss_pred cccccccc
Confidence 77777665
No 10
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=20.37 E-value=3e+02 Score=25.31 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=23.1
Q ss_pred HhhhcccCchhhhhHHHHHH--hcCCHHHHhhHHH
Q 043373 115 ICEFAGRLSEEEKIRIFEIL--MGLSEEEKRKLSE 147 (809)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 147 (809)
+..--|+.+++|+..|-+++ ||+++++++.+.+
T Consensus 39 vAkADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~ 73 (161)
T 2ou3_A 39 CAKADGVISPEEKDWALGFCASWGVADWVIEDLKT 73 (161)
T ss_dssp HHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHhh
Confidence 34445777877777666654 6899998877765
Done!