BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043376
(348 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359474007|ref|XP_002270348.2| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Vitis vinifera]
Length = 774
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/360 (63%), Positives = 264/360 (73%), Gaps = 37/360 (10%)
Query: 1 MGFSFTIPTLTFKFHHNFPPKPFIS--------FPPKRFNFISLRTLKAIGPDGKFYPTP 52
M +F T F + H+ KP IS FP R LR+ + G F P P
Sbjct: 1 MALTFFSLTTPFMYPHSLCLKPSISQFKSLHGFFPLHR----RLRSPAVVVSAGNFDPNP 56
Query: 53 SDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGD 112
+DDDPPEAPED+AHG+ KFQQI RQAA+ARKR+E+ FK +QST+LNAIADV+D P N
Sbjct: 57 ADDDPPEAPEDSAHGLFKFQQIQRQAARARKREEEQFKKDQSTFLNAIADVEDAPDNVDS 116
Query: 113 VSEQ---DDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTV----RQGIEELEPEEVVDL 165
+ + DD FGEIDKA+AMKR E+VK+GL+KP +++ V +GIEELEP+EVVDL
Sbjct: 117 IDAEGAGDDLFGEIDKAIAMKRKEFVKQGLLKPNPKKESVVPEEIAEGIEELEPDEVVDL 176
Query: 166 EEIDELQGLRVVSED---EEDEGLDDD-SKSGKFDVNLDATSDKYKDKGNGLVLDSSFDL 221
EEI+EL+GL V+SED EE E LDD+ S SG N++ S + SSFD+
Sbjct: 177 EEINELRGLTVISEDLDDEESEKLDDEESDSG----NVNGGSSSH----------SSFDV 222
Query: 222 DFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFV 281
DFDSFG+S RIVEPKF+MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVS+GDLFV
Sbjct: 223 DFDSFGESGVRIVEPKFRMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFV 282
Query: 282 CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDT+LVLP F G
Sbjct: 283 CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTSLVLPALAAAFYG 342
>gi|365222938|gb|AEW69821.1| Hop-interacting protein THI138 [Solanum lycopersicum]
Length = 771
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/328 (64%), Positives = 247/328 (75%), Gaps = 21/328 (6%)
Query: 14 FHHNFPP---KPFISFPPKRFNF-ISLRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHGVS 69
HH PP KPFIS R +L T+ AIG DGK+YPTPSDDDPPEAPED+ HGV+
Sbjct: 15 LHHTLPPLQFKPFISLHHLRLKHPTTLTTVSAIGADGKYYPTPSDDDPPEAPEDSMHGVN 74
Query: 70 KFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVN--TGDVSEQDDFFGEIDKAV 127
KFQQI RQAAKARK+QE+ FK QS ++NA+ADV+D P N D DD FGEIDKA+
Sbjct: 75 KFQQIQRQAAKARKQQEELFKKEQSIFVNALADVEDAPDNPLVNDSDSGDDLFGEIDKAI 134
Query: 128 AMKRDEYVKKGLIKPKKREDDTVR---QGIEELEPEEVVDLEEIDELQGLRVVSEDEEDE 184
A+KR E+VK+GL+KP ++ V +GI+EL PEEVVDLEEI EL GL +SE EE E
Sbjct: 135 ALKRKEFVKQGLLKPNPKKSALVEVEVEGIDELLPEEVVDLEEISELTGLTEISEGEESE 194
Query: 185 GLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAE 244
D F+V+ D ++ D SSFD+DFD +GK++ RI EPKF+MSLAE
Sbjct: 195 EDRSD-----FEVSDDVVKAEFSDL-------SSFDIDFDEYGKAKPRIAEPKFRMSLAE 242
Query: 245 LLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVA 304
LLDES+VVPVSVYGDLEVEI+GIQHDSR+V +GDLFVCCVG KTDGHLYLSEADKRGAVA
Sbjct: 243 LLDESRVVPVSVYGDLEVEISGIQHDSRLVESGDLFVCCVGMKTDGHLYLSEADKRGAVA 302
Query: 305 VVASKEIDIEETLGCKALVIVEDTNLVL 332
VVASKEIDIEETLGCKALVIVEDTN VL
Sbjct: 303 VVASKEIDIEETLGCKALVIVEDTNAVL 330
>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
putative [Ricinus communis]
gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
putative [Ricinus communis]
Length = 780
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 223/358 (62%), Positives = 257/358 (71%), Gaps = 35/358 (9%)
Query: 1 MGFSFTIPTLTFKFHHNF---------PPKPFISFPPKRFNFISLRT----LKAIGPDGK 47
M F+FT T H NF P +S PP F SLR L A+G DG
Sbjct: 1 MAFTFTSQLHTLSSHLNFISLKRQFTIKPVHSLSRPP----FPSLRHQQNPLLAVGQDGN 56
Query: 48 FYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIA--DVDD 105
FYP PS DDPPEAPED+AHG SKF QIH QAA+ARK QE+DFK +QSTYLNAIA +++D
Sbjct: 57 FYPNPSADDPPEAPEDSAHGFSKFDQIHIQAARARKIQEEDFKKHQSTYLNAIAGSEIED 116
Query: 106 PPVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKRE---DDTVRQGIEELEPEEV 162
P V++ + DD FGEIDKA+A+KR+E++K+GL+KP R +D V +GIEELEPEEV
Sbjct: 117 PSVSS-SSTSGDDLFGEIDKAIALKREEFIKQGLLKPTVRNKGNEDVVSEGIEELEPEEV 175
Query: 163 VDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGN-GLVLDSSFDL 221
VDL+EI+ELQGLRVV + + + F KG+ GL D SFDL
Sbjct: 176 VDLDEINELQGLRVVDAESDSSDDNSSGFDVDF-----------SKKGDLGLSRDPSFDL 224
Query: 222 DFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFV 281
DFDS+GK + IVEPKF+MSLAELLDESKVVPVSV GDLEVEITGIQHDSR+V+AGDLFV
Sbjct: 225 DFDSYGKGKTVIVEPKFRMSLAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFV 284
Query: 282 CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
CCVGR+TDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTN VLP F
Sbjct: 285 CCVGRRTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNAVLPALSAAF 342
>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa]
gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]
Length = 777
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 222/354 (62%), Positives = 257/354 (72%), Gaps = 26/354 (7%)
Query: 1 MGFSFTIPTLTFKFHHN--FPPKPFISFP-------PKRFNFISLR----TLKAIGPDGK 47
M F+FT+ + TF + PKP P PK +F+SL +L AIGPDGK
Sbjct: 1 MAFTFTLQSHTFLSQNPNLLSPKPTFFKPRNLFPSLPKTPSFLSLHGTKHSLFAIGPDGK 60
Query: 48 FYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPP 107
FYP +D+DPPEAPEDTAHGVSK++Q+H QA++ARK QE+DFK NQST+L AIAD + P
Sbjct: 61 FYPNTADNDPPEAPEDTAHGVSKWEQVHIQASRARKAQEEDFKKNQSTFLKAIADTEVNP 120
Query: 108 VNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDT-VRQGIEELEPEEVVDLE 166
+ S+ DD FGEIDKA+ M+R E VK+GL+KPK + + V +G+EELEPEEVVDLE
Sbjct: 121 NSLN--SDGDDLFGEIDKAIVMERQELVKQGLLKPKDIKGSSDVMEGVEELEPEEVVDLE 178
Query: 167 EIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLD-SSFDLDFDS 225
EIDEL GL V+ D +++G S FDV + S K G LD SFDLDFDS
Sbjct: 179 EIDELTGLTVIDTDSDEDG------SSGFDVGVGEKSGK---SNAGASLDEKSFDLDFDS 229
Query: 226 FGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVG 285
GK + IVEPKF+MSLAELLDESKVVPVSV GDLEVEITGIQ DSRVVSAGDLFVC VG
Sbjct: 230 IGKLKVNIVEPKFRMSLAELLDESKVVPVSVLGDLEVEITGIQDDSRVVSAGDLFVCRVG 289
Query: 286 RKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
KTDGHLYLSEADKRGAVAVVASKE+DIEETLGCKALVIVEDTN VLP F
Sbjct: 290 MKTDGHLYLSEADKRGAVAVVASKEVDIEETLGCKALVIVEDTNAVLPALAAAF 343
>gi|449452306|ref|XP_004143900.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Cucumis sativus]
gi|449495779|ref|XP_004159942.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Cucumis sativus]
Length = 779
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 218/346 (63%), Positives = 259/346 (74%), Gaps = 29/346 (8%)
Query: 17 NFPPKPFISFPPKRFNFI----------SLRTLK-----AIGPDGKFYPTPSDDDPPEAP 61
F P P I P F FI ++R L+ AIGPDGKFYP P+DDDPPEAP
Sbjct: 6 TFLPFPLILSPRSNFPFIRPQFHRQYLPAIRILRPSVPSAIGPDGKFYPDPADDDPPEAP 65
Query: 62 EDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNT---GDVSEQDD 118
ED+ HGVSKFQQI+RQAA+ARK QE+DFK +QSTYL+AIADV+D P N S DD
Sbjct: 66 EDSGHGVSKFQQIYRQAARARKIQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESSGDD 125
Query: 119 FFGEIDKAVAMKRDEYVKKGLIKPKKR-----EDDTVRQGIEELEPEEVVDLEEIDELQG 173
FGEIDKA+A+KR E+VK+GL+KP + E D + +GI+ELE EEV DLEEI+EL+G
Sbjct: 126 LFGEIDKAIALKRKEFVKQGLLKPNPKKEKVGEKDEI-EGIDELETEEVADLEEINELRG 184
Query: 174 LRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARI 233
L V+SED + E +D+ D N+ A + + L +SFD+DFDS+GK +ARI
Sbjct: 185 LTVISEDVDVEEDEDEDGPRNLDDNVSAIGGE-----DELSSFNSFDVDFDSYGKVKARI 239
Query: 234 VEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLY 293
VEPKFKM+LAELLDESKVVPVSV+G+LE+EITGIQHDSRVV+AGDLFVCCVGR+TDGHLY
Sbjct: 240 VEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRVVTAGDLFVCCVGRETDGHLY 299
Query: 294 LSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
L+EADKRGAVAVVASKEIDIEETLGCKALV+VEDTN VLP F
Sbjct: 300 LTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASF 345
>gi|356528442|ref|XP_003532812.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Glycine max]
Length = 750
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 197/336 (58%), Positives = 238/336 (70%), Gaps = 39/336 (11%)
Query: 11 TFKFHHNFPPKPFISFPPKR---FNFISLRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHG 67
T K H P S P R + F+ +R +AIGPDGKFYP+P+DDDPPEA ED++HG
Sbjct: 20 TVKLQHFRKPCTCSSTPFFRLLSYPFLHVRAPRAIGPDGKFYPSPADDDPPEADEDSSHG 79
Query: 68 VSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSEQDDFFGEIDKAV 127
S FQQI RQA +AR+ +EDD+K NQSTYL AIADV+D P N S +DD FGEIDKA+
Sbjct: 80 FSTFQQIQRQAERARQIEEDDYKKNQSTYLAAIADVEDAPDNAPFDSSEDDLFGEIDKAL 139
Query: 128 AMKRDEYVKKGLIKPKK-REDDTVRQGIEELEPEEVVDLEEIDELQGLRVVSEDEEDEGL 186
A+KR E+V +GL++P ++D ++EL+P+E+ DL EI+ LQGL
Sbjct: 140 ALKRKEFVSQGLLQPNPPKQDPLPVAAVDELQPDELGDLAEIERLQGL------------ 187
Query: 187 DDDSKSGKFDVNLDATSDKYKDKGNGLVLDSS---FDLDFDSFGKSRARIVEPKFKMSLA 243
T+D GNG + +S+ F+ DFDS+GK++ RIVE KFKMSLA
Sbjct: 188 ---------------TAD-----GNGNISNSTESPFEFDFDSYGKTKVRIVEGKFKMSLA 227
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
ELLDESKVVPVSV GDLE+EITGIQHDSR+VS+GDLFVCCVG KTDGHL+LSEADKRGAV
Sbjct: 228 ELLDESKVVPVSVSGDLEIEITGIQHDSRIVSSGDLFVCCVGSKTDGHLFLSEADKRGAV 287
Query: 304 AVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
AVVASKEIDIE+TLGCKALVIVEDTN VLP F
Sbjct: 288 AVVASKEIDIEDTLGCKALVIVEDTNAVLPALAASF 323
>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
Length = 767
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 241/352 (68%), Gaps = 43/352 (12%)
Query: 1 MGFSFTIPTLTF----KFHHNFPPKPFISFPPKRFNFISLRTLKAIGPDGK-FYPTPSDD 55
M F+F P F +F KP + P F+ S A GP + YP P+DD
Sbjct: 1 MAFTFLSPNPVFLSLTGTTSSFSYKPVL-LP---FSRNSRNLTVAAGPARRNSYPNPADD 56
Query: 56 DPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSE 115
DPPEAPED+ HGVSKFQQI RQAA+ARK +E+DF+ N++TYL+AIADV+D D E
Sbjct: 57 DPPEAPEDSMHGVSKFQQIQRQAARARKLEEEDFEKNRNTYLSAIADVEDAAETGRDDEE 116
Query: 116 QD-DFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQ--------------GIEELEPE 160
D F +ID+A++MKR E+VK+GL+KP + ++++ ++EL+ E
Sbjct: 117 SGGDLFSDIDRAISMKRSEFVKQGLLKPNPPKTASLKKIGEEGDEEEGDVTDVVDELDEE 176
Query: 161 EVVDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFD 220
EVVDL+EID+L GL +S DEED +D++ G +N K K+ G+ D F+
Sbjct: 177 EVVDLDEIDKLTGLTEIS-DEED-WVDEE---GNTRIN------KKKEIGS----DHQFE 221
Query: 221 LDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLF 280
D D FG+S+ RIVEPKFKMSLAELLDESKVVP+SVYGDL+VEITGIQHDSR VSAGDLF
Sbjct: 222 FDLDDFGESKVRIVEPKFKMSLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLF 281
Query: 281 VCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
VCCVG ++ +LSEADKRGAVAVVASKEIDIE+TLGCKALVIVEDTN VL
Sbjct: 282 VCCVGSES----FLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVL 329
>gi|356511484|ref|XP_003524456.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Glycine max]
Length = 748
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 196/320 (61%), Positives = 234/320 (73%), Gaps = 36/320 (11%)
Query: 22 PFISFPPKRFNFIS-LRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAK 80
PF FP + F+ +R +AIGPDGKFYP+P+DDDPPEA ED++HG S FQQI RQA +
Sbjct: 36 PF--FPSFSYPFVVFVRAPRAIGPDGKFYPSPADDDPPEADEDSSHGFSTFQQIQRQAQR 93
Query: 81 ARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLI 140
AR+ +E+D+K NQSTYL AIADV+D P N S +DD FGEIDKA+A+KR E+V +GL+
Sbjct: 94 ARQIEEEDYKNNQSTYLAAIADVEDAPDNAPFDSSEDDLFGEIDKALALKRKEFVSQGLL 153
Query: 141 KPKK-REDDTVRQGIEELEPEEVVDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNL 199
+P ++D ++EL+P+E+ DLEEI+ LQGL
Sbjct: 154 QPNPPKQDQLPVAAVDELQPDELGDLEEIERLQGL------------------------- 188
Query: 200 DATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGD 259
T D GNG DS F+ DFDS+GKS+ RIVE KFKM+LAELLDESKVVPVSV GD
Sbjct: 189 --TGD-----GNGSSTDSPFEFDFDSYGKSKVRIVEGKFKMTLAELLDESKVVPVSVSGD 241
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGC 319
LE+EITGIQHDSR+VS+GDLFVCCVGRKTDGHL+LSEADKRGAVAVVASKEIDIE+TLGC
Sbjct: 242 LEIEITGIQHDSRIVSSGDLFVCCVGRKTDGHLFLSEADKRGAVAVVASKEIDIEDTLGC 301
Query: 320 KALVIVEDTNLVLPHWLPLF 339
KALVIVEDTN VLP F
Sbjct: 302 KALVIVEDTNAVLPALAASF 321
>gi|240254313|ref|NP_176555.4| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
[Arabidopsis thaliana]
gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
[Arabidopsis thaliana]
Length = 772
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 190/354 (53%), Positives = 237/354 (66%), Gaps = 47/354 (13%)
Query: 1 MGFSFTIPTLTF----KFHHNFPPKPFISFPPKRFNFISLRTLK-AIGPDGK-FYPTPSD 54
M F+F P F +F KP + P R + RTL A GP + YP P+D
Sbjct: 1 MAFTFLSPHPVFLSLTGTTSSFSYKPVL-LPFSR----NSRTLTVAAGPARRNSYPNPAD 55
Query: 55 DDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVS 114
DDPPEAPED+ HGVSKFQQI RQAA+ARK +E+DF+ N++TYL+AIADV+D D
Sbjct: 56 DDPPEAPEDSMHGVSKFQQIQRQAARARKLEEEDFEKNRNTYLSAIADVEDAAETGRDDE 115
Query: 115 EQD-DFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIEELEPEEVVDL-------- 165
E D F +ID+A++MKR E+VK+GL+KP + ++++ I E EE D+
Sbjct: 116 ESGGDLFSDIDRAISMKRSEFVKQGLLKPNPPKTASLKK-IGEEGNEEEGDVTDDVDELD 174
Query: 166 -------EEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSS 218
+EID+L GL +S DEED +D++ G +N K K+ G+ D
Sbjct: 175 EEEVVDLDEIDKLTGLTEIS-DEED-WVDEE---GNTRIN------KKKEFGS----DHQ 219
Query: 219 FDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGD 278
F+ D D FG+S+ARIVEPKFKM LAELLDESKVVP+SVYGDL+VEITGIQHDSR VSAGD
Sbjct: 220 FEFDLDDFGESKARIVEPKFKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGD 279
Query: 279 LFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
LFVCC+G + +LSEADKRGAVAVVASKEIDIE+TLGC+ALVIVEDTN VL
Sbjct: 280 LFVCCLGSEN----FLSEADKRGAVAVVASKEIDIEDTLGCRALVIVEDTNAVL 329
>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; 54319-51679 [Arabidopsis
thaliana]
Length = 767
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 190/354 (53%), Positives = 237/354 (66%), Gaps = 47/354 (13%)
Query: 1 MGFSFTIPTLTF----KFHHNFPPKPFISFPPKRFNFISLRTLK-AIGPDGK-FYPTPSD 54
M F+F P F +F KP + P R + RTL A GP + YP P+D
Sbjct: 1 MAFTFLSPHPVFLSLTGTTSSFSYKPVL-LPFSR----NSRTLTVAAGPARRNSYPNPAD 55
Query: 55 DDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVS 114
DDPPEAPED+ HGVSKFQQI RQAA+ARK +E+DF+ N++TYL+AIADV+D D
Sbjct: 56 DDPPEAPEDSMHGVSKFQQIQRQAARARKLEEEDFEKNRNTYLSAIADVEDAAETGRDDE 115
Query: 115 EQD-DFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIEELEPEEVVDL-------- 165
E D F +ID+A++MKR E+VK+GL+KP + ++++ I E EE D+
Sbjct: 116 ESGGDLFSDIDRAISMKRSEFVKQGLLKPNPPKTASLKK-IGEEGNEEEGDVTDDVDELD 174
Query: 166 -------EEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSS 218
+EID+L GL +S DEED +D++ G +N K K+ G+ D
Sbjct: 175 EEEVVDLDEIDKLTGLTEIS-DEED-WVDEE---GNTRIN------KKKEFGS----DHQ 219
Query: 219 FDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGD 278
F+ D D FG+S+ARIVEPKFKM LAELLDESKVVP+SVYGDL+VEITGIQHDSR VSAGD
Sbjct: 220 FEFDLDDFGESKARIVEPKFKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGD 279
Query: 279 LFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
LFVCC+G + +LSEADKRGAVAVVASKEIDIE+TLGC+ALVIVEDTN VL
Sbjct: 280 LFVCCLGSEN----FLSEADKRGAVAVVASKEIDIEDTLGCRALVIVEDTNAVL 329
>gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus
sativus]
Length = 871
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 173/308 (56%), Positives = 216/308 (70%), Gaps = 42/308 (13%)
Query: 41 AIGPDGKF-YPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNA 99
A GP + YP P+DDDPPEAPED+ HGVSKFQQI RQAA+ARK +E+DF+ N++TYL+A
Sbjct: 149 AAGPTRRSSYPNPADDDPPEAPEDSMHGVSKFQQIQRQAARARKLEEEDFEKNRNTYLSA 208
Query: 100 IADVDDPPVNTG--DVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQ----- 152
IADV+D P TG DV D F +ID+A++MKR E+VKKGL++P + + ++
Sbjct: 209 IADVEDAP-ETGRDDVESGGDLFSDIDRAISMKRSEFVKKGLLQPNPPKTASSKKIDEEE 267
Query: 153 ----GIEELEPEEVVDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKD 208
++EL+ EE VDL+EID+L GL S++E D +
Sbjct: 268 EEDDAVDELDEEEAVDLDEIDKLTGLTEASDEE----------------------DWVDE 305
Query: 209 KGNGLVL----DSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEI 264
+GN ++ + F+ D D FG+S+ARIVEPKF++SLAELLDESKVVP+SVYGDL+VEI
Sbjct: 306 EGNPRIISKKKEHQFEFDLDDFGESKARIVEPKFRLSLAELLDESKVVPISVYGDLDVEI 365
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVI 324
TGIQHDSR VSAGDLFVCC G LSEADKRGAVAVVASKEIDIE+TLGC+ALVI
Sbjct: 366 TGIQHDSRGVSAGDLFVCCDGGDDS---VLSEADKRGAVAVVASKEIDIEDTLGCRALVI 422
Query: 325 VEDTNLVL 332
VEDT VL
Sbjct: 423 VEDTEAVL 430
>gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group]
gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6
-diaminopimelate ligase [Oryza sativa Japonica Group]
gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein,
expressed [Oryza sativa Japonica Group]
gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group]
Length = 757
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 179/295 (60%), Gaps = 30/295 (10%)
Query: 47 KFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDP 106
+F P +DD+PPEA ED++HG++++ Q+ R +AR+RQ +A Q P
Sbjct: 41 RFRPPTADDEPPEAAEDSSHGLNRYDQLTRHVERARRRQ----QAEQPEITPDHPLFSSP 96
Query: 107 PVN--TGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKP------KKREDDTVRQGIEELE 158
P + G D+FF EID+A+A KR+E+ ++GLIKP + E+D + +EL
Sbjct: 97 PSSGEAGSYDPDDEFFDEIDRAIAEKREEFTRRGLIKPSAPAPSQPEEEDGL---ADELS 153
Query: 159 PEEVVDLEEIDELQGLRVVS-EDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDS 217
PEEV+DL+EI LQGL VVS DEEDE + + + D +G V D
Sbjct: 154 PEEVIDLDEIRRLQGLSVVSLADEEDEEANGGGGGVDYGDDGVPLDD------DGEVFDV 207
Query: 218 SFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAG 277
+ D G AR+ P F+M+LAELLDESK+VPV+V GD +V + G+Q D+ +V+AG
Sbjct: 208 A-----DEVGLEGARVRYPAFRMTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAG 262
Query: 278 DLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
DL+V CVG +G L+EADKRGAVAVVA + +DIE TL C+ALVIV+D L
Sbjct: 263 DLYV-CVGE--EGLAGLTEADKRGAVAVVADQTVDIEGTLACRALVIVDDITAAL 314
>gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group]
Length = 770
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 179/295 (60%), Gaps = 30/295 (10%)
Query: 47 KFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDP 106
+F P +DD+PPEA ED++HG++++ Q+ R +AR+RQ +A Q P
Sbjct: 41 RFRPPTADDEPPEAAEDSSHGLNRYDQLTRHVERARRRQ----QAEQPEITPDHPLFSSP 96
Query: 107 PVN--TGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKP------KKREDDTVRQGIEELE 158
P + G D+FF EID+A+A KR+E+ ++GLIKP + E+D + +EL
Sbjct: 97 PSSGEAGSYDPDDEFFDEIDRAIAEKREEFTRRGLIKPSAPAPSQPEEEDGL---ADELS 153
Query: 159 PEEVVDLEEIDELQGLRVVS-EDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDS 217
PEEV+DL+EI LQGL VVS DEEDE + + + D +G V D
Sbjct: 154 PEEVIDLDEIRRLQGLSVVSLADEEDEEANGGGGGVDYGDDGVPLDD------DGEVFDV 207
Query: 218 SFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAG 277
+ D G AR+ P F+M+LAELLDESK+VPV+V GD +V + G+Q D+ +V+AG
Sbjct: 208 A-----DEVGLEGARVRYPAFRMTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAG 262
Query: 278 DLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
DL+V CVG +G L+EADKRGAVAVVA + +DIE TL C+ALVIV+D L
Sbjct: 263 DLYV-CVGE--EGLAGLTEADKRGAVAVVADQTVDIEGTLACRALVIVDDITAAL 314
>gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group]
Length = 889
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 181/300 (60%), Gaps = 31/300 (10%)
Query: 47 KFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDP 106
+F P +DD+PPEA ED++HG++++ Q+ R +AR+RQ+ A Q P
Sbjct: 41 RFRPPTADDEPPEAAEDSSHGLNRYDQLTRHVERARRRQQ----AEQPEITPDHPLFSSP 96
Query: 107 PVN--TGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKP------KKREDDTVRQGIEELE 158
P + G D+FF EID+A+A KR+E+ ++GLIKP + E+D + +EL
Sbjct: 97 PSSGEAGSYDPDDEFFDEIDRAIAEKREEFTRRGLIKPSAPAPSQPEEEDGL---ADELS 153
Query: 159 PEEVVDLEEIDELQGLRVVS-EDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDS 217
PEEV+DL+EI LQGL VVS DEEDE + + + D +G V D
Sbjct: 154 PEEVIDLDEIRRLQGLSVVSLADEEDEEANGGGGGVDYGDDGVPLDD------DGEVFDV 207
Query: 218 SFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAG 277
+ D G AR+ P F+++LAELLDESK+VPV+V GD +V + G+Q D+ +V+AG
Sbjct: 208 A-----DEVGLEGARVRYPAFRVTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAG 262
Query: 278 DLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLP 337
DL+V CVG +G L+EADKRGAVAVVA + +DIE TL C+ALVIV+D L LP
Sbjct: 263 DLYV-CVGE--EGLAGLTEADKRGAVAVVADQTVDIEGTLACRALVIVDDITAAL-RMLP 318
>gi|326531704|dbj|BAJ97856.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 503
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 178/293 (60%), Gaps = 20/293 (6%)
Query: 47 KFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDP 106
+F P +DD+PPEA ED++HG++++ Q+ R +ARKRQ+ D + T + + P
Sbjct: 43 RFRPPTADDEPPEAAEDSSHGLNRYDQLARHVERARKRQQAD--QPEVTADHPLFSSPPP 100
Query: 107 PVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIEELEPEEVVDLE 166
P G D+FF EID+A+A KR+E+ ++GLIKP V +EL PEE +DL+
Sbjct: 101 PPAGGSYDPDDEFFDEIDRAIAEKREEFTRRGLIKPTPPPPPEVDVPADELSPEEAIDLD 160
Query: 167 EIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSF 226
EI LQGL V S +E++ + + D L D G G + L+ D
Sbjct: 161 EIRRLQGLSVASVADEEDDEAEGGEEEYGDEGLLLDED-----GEGFDVAEELGLEAD-- 213
Query: 227 GKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGR 286
RI +P F+M+LAELLDESK+VPV+V GD +V ++G+Q D+ +V+AGDLFV CVG
Sbjct: 214 -----RIRQPAFRMTLAELLDESKLVPVAVTGDQDVALSGVQSDATLVAAGDLFV-CVGE 267
Query: 287 KTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNL---VLPHWL 336
G L+EADKRGAVAVVA +++DIE TL C+ALVIV+D VLP L
Sbjct: 268 S--GLAGLTEADKRGAVAVVADQDVDIEGTLACRALVIVDDITAALRVLPACL 318
>gi|413955276|gb|AFW87925.1| hypothetical protein ZEAMMB73_630035 [Zea mays]
Length = 760
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 181/298 (60%), Gaps = 40/298 (13%)
Query: 53 SDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQ-----EDDFKANQSTYLNAIADVDDPP 107
+DD+PPEA ED++HG++++ Q+ R +AR RQ ++ ++ ST DP
Sbjct: 53 ADDEPPEAAEDSSHGLTRYDQLARSVERARIRQPEITPDNPLFSSPSTAGGGGGGSYDP- 111
Query: 108 VNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIE------ELEPEE 161
D+FF EID+A+A KR+E+ ++GLIKP + E EL PEE
Sbjct: 112 --------DDEFFDEIDRAIAEKREEFTRRGLIKPSPASPPPSQSQPEDEDLTDELSPEE 163
Query: 162 VVDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDL 221
V+DL+EI +LQGL VVS +E++ + + + LD + G G FD+
Sbjct: 164 VIDLDEIRKLQGLSVVSVADEEDEEVEGGEDEDDGLPLD-------EDGEG------FDV 210
Query: 222 DFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFV 281
+ G AR+ +P F+M+LAELLDESK+VPV+V GD +V + G+Q D+ +V+AGDLFV
Sbjct: 211 -AEELGLEGARMRQPAFRMTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFV 269
Query: 282 CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVED--TNL-VLPHWL 336
CVG DG L+EADKRGAVAVVA ++++IE TL C+ALVIV+D T L VLP L
Sbjct: 270 -CVGE--DGLAGLTEADKRGAVAVVADQDLNIEGTLACRALVIVDDILTALRVLPACL 324
>gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
Length = 761
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/297 (42%), Positives = 179/297 (60%), Gaps = 35/297 (11%)
Query: 53 SDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGD 112
+DD+PPEA ED++HG++++ Q+ R +AR RQ + N + A G+
Sbjct: 51 ADDEPPEAAEDSSHGLTRYDQLARSVERARSRQPEITPDNPLFTSPSPAGG----GGGGN 106
Query: 113 VSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKR----------EDDTVRQGIEELEPEEV 162
D+FF EID+A+A KR+E+ ++GLIKP ED+ + +EL PEEV
Sbjct: 107 YDPDDEFFDEIDRAIAEKREEFTRRGLIKPSPASPPPSSQSQPEDEDL---ADELSPEEV 163
Query: 163 VDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLD 222
+DL+EI +LQGL VVS +E++ + + D L D G G FD+
Sbjct: 164 IDLDEIRKLQGLSVVSVADEEDEEVEGREDEDGDDGLPLNED-----GEG------FDV- 211
Query: 223 FDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVC 282
+ G AR+ +P F+M+LAELLDESK+VPV+V GD +V + G+Q D+ +V+AGDLFV
Sbjct: 212 AEELGLEGARMRQPAFRMTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFV- 270
Query: 283 CVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNL---VLPHWL 336
CVG DG L+EADKRGAVAVVA ++++IE TL C+ALVIV+D VLP L
Sbjct: 271 CVGE--DGLAGLTEADKRGAVAVVADQDLNIEGTLACRALVIVDDILAALRVLPACL 325
>gi|357147315|ref|XP_003574298.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase-like [Brachypodium distachyon]
Length = 755
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 127/286 (44%), Positives = 172/286 (60%), Gaps = 27/286 (9%)
Query: 53 SDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIAD---VDDPPVN 109
SDD+PPEA ED++HG++++ Q+ R +AR+RQ QS AD PP
Sbjct: 48 SDDEPPEAAEDSSHGLNRYDQLARHVERARRRQ-------QSEQPEVTADHPLFSSPPSA 100
Query: 110 T--GDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQG-IEELEPEEVVDLE 166
T G D+FF EID+A+A KR+E+ ++GLIKP G +EL PEE +DL+
Sbjct: 101 TTSGSYDPDDEFFDEIDRAIAEKREEFTRRGLIKPTPPPPPPELDGPADELSPEEAIDLD 160
Query: 167 EIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSF 226
EI LQGL V S +ED+ + + D L D + FD+ D
Sbjct: 161 EIRRLQGLSVASTADEDDEEAEGVEEEDGDEGLPLHDDDAE----------GFDV-ADEL 209
Query: 227 GKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGR 286
G AR+ +P F+M+LAELLDESK+VPV+V GD +V + G+Q D+ +V+AGDLFV CVG
Sbjct: 210 GLDGARMRQPAFRMTLAELLDESKLVPVAVTGDQDVALAGVQSDASLVAAGDLFV-CVGE 268
Query: 287 KTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
+G L+EADKRGAVAVVA + +DIE TL C+ALVIV+D + L
Sbjct: 269 --NGLAGLTEADKRGAVAVVADQAVDIEGTLACRALVIVDDIAVAL 312
>gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
Length = 507
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 79/102 (77%), Gaps = 2/102 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L ELLDE+KVVP+SV GDL+V I+GI HDSR V++GD+FVCC+G +DGH ++ +A +
Sbjct: 1 MTLTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAE 60
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GAV +VA+KE++I E++ KA+VIV DTN +L F G
Sbjct: 61 QGAVVIVATKEVEIGESV--KAVVIVSDTNSILSALAGAFYG 100
>gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
Length = 532
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 79/102 (77%), Gaps = 2/102 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L ELLDE+KVVP+SV GDL+V I+GI HDSR V++GD+FVCC+G +DGH ++ +A +
Sbjct: 1 MTLTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAE 60
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GAV +VA+KE++I E++ KA+VIV DTN +L F G
Sbjct: 61 QGAVVIVATKEVEIGESV--KAVVIVSDTNSILSALAGAFYG 100
>gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 539
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 82/109 (75%), Gaps = 2/109 (1%)
Query: 233 IVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHL 292
++EP ++M+LAELLDE++V PV+V G+L++EITGIQHDSR+V GDLFVC G K+DG+
Sbjct: 1 MMEPTYRMTLAELLDEARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYE 60
Query: 293 YLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+ +A ++GAVA+V+S E+ E G +A V+VEDTN++L F G
Sbjct: 61 FAHQAIEKGAVAIVSSSEVLPAE--GLEASVVVEDTNILLSGLAGAFYG 107
>gi|226507610|ref|NP_001141424.1| uncharacterized protein LOC100273534 [Zea mays]
gi|194704536|gb|ACF86352.1| unknown [Zea mays]
Length = 540
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 82/105 (78%), Gaps = 6/105 (5%)
Query: 235 EPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYL 294
+P F+M+LAELLDESK+VPV+V GD +V + G+Q D+ +V+AGDLFV CVG DG L
Sbjct: 3 QPAFRMTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFV-CVGE--DGLAGL 59
Query: 295 SEADKRGAVAVVASKEIDIEETLGCKALVIVED--TNL-VLPHWL 336
+EADKRGAVAVVA ++++IE TL C+ALVIV+D T L VLP L
Sbjct: 60 TEADKRGAVAVVADQDLNIEGTLACRALVIVDDILTALRVLPACL 104
>gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens]
gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens]
gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens]
gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens]
Length = 606
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 88/132 (66%), Gaps = 5/132 (3%)
Query: 210 GNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQH 269
G+ + D SF L + ++ +++ +M+L +LL+E++V P+S GDL+VEITGIQ
Sbjct: 68 GDSKLTDRSFSLKSSTHEEA---VLDQTDRMTLRKLLNEARVSPLSTEGDLDVEITGIQQ 124
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTN 329
DSR+V+ GDLFVC G K+DGH + +A ++GAVA+++ E+ + E G KA VIVEDT+
Sbjct: 125 DSRLVAPGDLFVCVKGLKSDGHQFAIQAIEKGAVAIISLMEVSLTE--GLKAAVIVEDTS 182
Query: 330 LVLPHWLPLFIG 341
++L + G
Sbjct: 183 VILSALAGVIYG 194
>gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dialister micraerophilus DSM 19965]
gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dialister micraerophilus DSM 19965]
Length = 498
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+L ELL++S + + G+++ +I I DSR+V G LF+C G DGH Y+SEA ++
Sbjct: 3 NLQELLNDSSYIKI--IGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEK 60
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GAVA++A K+I + E + +V V++T V+ PLF
Sbjct: 61 GAVAIIAEKKISVPEGV---TVVYVKNTRTVMEKIAPLF 96
>gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Dialister microaerophilus UPII 345-E]
gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Dialister microaerophilus UPII 345-E]
Length = 498
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+L ELL++S + + G+++ +I I DSR+V G LF+C G DGH Y+SEA ++
Sbjct: 3 NLQELLNDSSYIKI--IGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEK 60
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA+A++A K+I + E + +V V++T V+ PLF
Sbjct: 61 GAIAIIAEKKISVPEGV---TVVYVKNTRTVMEKIAPLF 96
>gi|407796616|ref|ZP_11143569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Salimicrobium sp. MJ3]
gi|407019132|gb|EKE31851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Salimicrobium sp. MJ3]
Length = 487
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 257 YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
YG+ +V ITG+ DSR V GDLF+C G KTDGH Y+S+A ++GA A+VA + ++E+T
Sbjct: 16 YGENDVTITGVTMDSREVGPGDLFICIRGFKTDGHQYISKAIEQGAAAIVAMEYTELEDT 75
Query: 317 LGCKALVIVEDTNLVLPHWLPLF 339
LV+V DT + F
Sbjct: 76 ----PLVVVSDTKRAMAQIASCF 94
>gi|357060974|ref|ZP_09121736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Alloprevotella rava F0323]
gi|355375509|gb|EHG22795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Alloprevotella rava F0323]
Length = 485
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L KV P+ G++++EITG+Q DSR V GDLF+ G +TDGH ++S+A +
Sbjct: 1 MKLTDVL--VKVQPLETKGNMDIEITGVQMDSRKVKKGDLFIAVKGTQTDGHAFISKALE 58
Query: 300 RGAVAVVASKEIDIE 314
GAVAV+ S E+ E
Sbjct: 59 LGAVAVLQSNELSAE 73
>gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Moorella thermoacetica ATCC 39073]
gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Moorella thermoacetica ATCC 39073]
Length = 499
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 5/93 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+LAEL+ K++ G+ +V +TG+ +DSR + +G LFV G KTDGHLY+ A +
Sbjct: 1 MTLAELVAPLKIIARG--GNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
RGAVAVV ++E + + A V V+DT L L
Sbjct: 59 RGAVAVVLAQERTLPPGV---AWVRVDDTRLAL 88
>gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
carboxidivorans P7]
Length = 483
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L ++L E K + G+ ++EI IQ+DSR V +GDLFVC G TDGH Y+S A
Sbjct: 1 MNLKKILKEIKYELLK--GNDDLEIREIQYDSRNVKSGDLFVCIEGYSTDGHKYVSSAVS 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
GA AV+ SK DIE C ++ EDT VL
Sbjct: 59 NGAAAVICSK--DIENLTEC-TVIKTEDTRKVLA 89
>gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Brevibacillus brevis NBRC 100599]
gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Brevibacillus brevis NBRC 100599]
Length = 492
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++PV+V GD +EITG+ DSR V G LFVC G DGH + ++A K GAVAV++ ++
Sbjct: 10 LLPVTVSGDDSMEITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKNGAVAVLSEQD 69
Query: 311 IDIEETL 317
+D+ T+
Sbjct: 70 LDVPATI 76
>gi|333978590|ref|YP_004516535.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822071|gb|AEG14734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 492
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M +EL++ + V G+ +V I GI +DSR V G LFV G TDGH Y+ +A
Sbjct: 1 MLFSELIEGQSCLAVG--GNQQVHIAGIAYDSRQVQPGFLFVAVEGFTTDGHRYVEQAVS 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRR 345
RGAVAVV KEI + + A V DT LVL F G R
Sbjct: 59 RGAVAVVVQKEIPLPSGI---AFARVPDTRLVLALLAARFYGYPSR 101
>gi|423223528|ref|ZP_17209997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides cellulosilyticus CL02T12C19]
gi|392638408|gb|EIY32249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides cellulosilyticus CL02T12C19]
Length = 483
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + P+ + G E EITG+ DSR+V AG LF+ G +TDGH+Y+ A +
Sbjct: 1 MVLSELL--KAIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPAAIE 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
DSM 14838]
Length = 483
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + P+ + G+ E EITG+ DSR+V AG LF+ G +TDGH+Y+ A +
Sbjct: 1 MVLSELL--KAIQPIQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPVAIE 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|399052143|ref|ZP_10741708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevibacillus sp. CF112]
gi|433545446|ref|ZP_20501800.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Brevibacillus agri BAB-2500]
gi|398050009|gb|EJL42399.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevibacillus sp. CF112]
gi|432183269|gb|ELK40816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Brevibacillus agri BAB-2500]
Length = 528
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++PV V GD +EITG+ DSR V G LFVC G DGH + ++A K GAVAV++ ++
Sbjct: 46 LLPVKVSGDDSMEITGLTADSRQVKPGYLFVCLTGYTVDGHAFAAQAVKNGAVAVLSEQD 105
Query: 311 IDIEETL 317
+D+ T+
Sbjct: 106 LDVPATI 112
>gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
carboxydivorans Nor1]
gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
carboxydivorans Nor1]
Length = 496
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V GD+ + IT + +DSR G LF+C G K DGH Y+++A GAVAV+ KE+ +E
Sbjct: 17 VRGDINLTITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAGGAVAVLVEKEVSVEP 76
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
+ ++ V DT + P F
Sbjct: 77 GM---TVIKVSDTRAAMQAITPFF 97
>gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|122318561|sp|Q0AYR3.1|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 489
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G L+ EI+GI +DSR V GDLF+C G K+DGHL+ +A + GAVAV+A +++D T
Sbjct: 17 GPLDREISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENGAVAVLAERQLD---TG 73
Query: 318 GCKALVIVEDTNLVLPHWLPLFIG 341
G L+ DT L + G
Sbjct: 74 GKATLLTTPDTRSALALLAANYYG 97
>gi|427384542|ref|ZP_18881047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides oleiciplenus YIT 12058]
gi|425727803|gb|EKU90662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides oleiciplenus YIT 12058]
Length = 483
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + P+ + G E EITG+ DSR+V AG LF+ G +TDGH Y++ A +
Sbjct: 1 MVLSELL--KTIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIAVAIE 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|373501063|ref|ZP_09591430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella micans F0438]
gi|371950654|gb|EHO68508.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella micans F0438]
Length = 488
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL K P+++ G ++VEITGI+ DSR V+AG++FV G TDGH +L +A +
Sbjct: 1 MRLNELLRNVK--PIAIQGSVDVEITGIEIDSRKVTAGNMFVAIKGTLTDGHRFLDKAIE 58
Query: 300 RGAVAVV 306
+GAVAV+
Sbjct: 59 QGAVAVL 65
>gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl tripeptide synthetase [Halothermothrix orenii H
168]
gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
168]
Length = 499
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M ++EL+ + + PV GDL+ EI I +DSR V+ LF+C G TDGH Y+ +A K
Sbjct: 1 MKISELIKD--ITPVETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYIDKAIK 58
Query: 300 RGAVAVVASKEIDI 313
+GAVAVV K++++
Sbjct: 59 KGAVAVVIEKDLEV 72
>gi|427412447|ref|ZP_18902639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella ratti
ACS-216-V-Col6b]
gi|425716254|gb|EKU79238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella ratti
ACS-216-V-Col6b]
Length = 494
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
V+V G +++ ++ I DSR V AG LF+C G +GH Y+++A + GAVA++AS+ I++
Sbjct: 14 VTVKGAVDMAVSHITADSREVKAGSLFICLTGAHVNGHDYVNKAVEAGAVAILASEPIEV 73
Query: 314 EETLGCKALVIVEDTNLVLPHWLPLF 339
+T+ ++ V+DT + + +P F
Sbjct: 74 SDTV---TVLTVKDTRIAMQQCVPFF 96
>gi|421873580|ref|ZP_16305192.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Brevibacillus laterosporus GI-9]
gi|372457367|emb|CCF14741.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Brevibacillus laterosporus GI-9]
Length = 492
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD +V ITGI DSR V GDLF+C G DGH + ++A ++GA+A++A EI++++
Sbjct: 15 IKGDDQVVITGITADSRNVKPGDLFICLSGFTVDGHEFAAQAVEKGAIAIIAEHEIEVDK 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
T +VIV D+ + F G
Sbjct: 75 T-----VVIVPDSRRAMAFLADRFFG 95
>gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
17393]
gi|189438325|gb|EDV07310.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides intestinalis DSM 17393]
Length = 482
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + P+ + G E EITG+ DSR+V AG LF+ G +TDGH Y+ A +
Sbjct: 1 MILSELL--KAIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIPAAIE 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Alkaliphilus oremlandii OhILAs]
gi|167017292|sp|A8MH31.1|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
OhILAs]
Length = 487
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL +V + G+++++I I DSR V+ LF+C G KT G LY++EA +
Sbjct: 1 MYLQELLKGIQVEKI--IGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQ 58
Query: 300 RGAVAVVASKEIDIEETLGCKA 321
RGAVA+++ KEI IE T K
Sbjct: 59 RGAVAILSEKEIAIEGTTTIKV 80
>gi|339009179|ref|ZP_08641751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Brevibacillus laterosporus LMG 15441]
gi|338773657|gb|EGP33188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Brevibacillus laterosporus LMG 15441]
Length = 492
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD +V ITGI DSR V GDLF+C G DGH + ++A ++GA+A++A EI++++
Sbjct: 15 IKGDDQVVITGITADSRNVKPGDLFICLSGFTVDGHEFAAQAVEKGAIAIIAEHEIEVDK 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
T +VIV D+ + F G
Sbjct: 75 T-----VVIVPDSRRAMAFLADRFFG 95
>gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella veroralis F0319]
gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella veroralis F0319]
Length = 485
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + P++++G+ EVEITG+ DSR ++ G LF+ G + DGH ++ +A +
Sbjct: 1 MKLSELL--KNITPIAIHGNAEVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIE 58
Query: 300 RGAVAVV 306
+GAVAV+
Sbjct: 59 QGAVAVL 65
>gi|354582288|ref|ZP_09001190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
gi|353199687|gb|EHB65149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
Length = 494
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 240 MSLAELLDESKVVPVSVY-GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL S V+ +V G +VEITGIQ DSR V GDLF+C G DGH + ++A
Sbjct: 1 MKLNEL---SSVLAAAVIDGAGDVEITGIQVDSREVKPGDLFICLPGHTVDGHDFAAQAA 57
Query: 299 KRGAVAVVASKEIDIE 314
+RGAVA+V +++DI
Sbjct: 58 ERGAVALVVERKLDIH 73
>gi|380693290|ref|ZP_09858149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides faecis MAJ27]
Length = 482
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD ++EITG+ DSR+V AG LF+ G +TDGH Y+ A +
Sbjct: 1 MLLNELL--KAIQPVQVTGDSKIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQ 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
1_2_48FAA]
gi|217986155|gb|EEC52494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides eggerthii DSM 20697]
gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
1_2_48FAA]
Length = 482
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + PV V G E +ITG+ DSR+V+AG LF+ G +TDGH Y+ A +
Sbjct: 1 MKLSELL--KTIQPVQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPAAIE 58
Query: 300 RGAVAVVA 307
+GA+AV+
Sbjct: 59 KGAIAVLC 66
>gi|385810786|ref|YP_005847182.1| UDP-N-acetylmuramyl tripeptide synthase [Ignavibacterium album JCM
16511]
gi|383802834|gb|AFH49914.1| UDP-N-acetylmuramyl tripeptide synthase [Ignavibacterium album JCM
16511]
Length = 488
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 6/98 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L ELL+ KV+ V+ G+++ +++GI+HDSR V +FV G KTDGHL++ +A
Sbjct: 1 MELTELLNHIKVIQVA--GNVQRKDVSGIEHDSRKVKKNSVFVAIKGYKTDGHLFVMDAI 58
Query: 299 KRGAVAVVASKEIDIEETLGCK---ALVIVEDTNLVLP 333
+GAVAVV +++ +I + + A ++V +T + L
Sbjct: 59 NKGAVAVVVAEDNNIPDEIFIHADIAKIVVHNTRIALA 96
>gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides thetaiotaomicron VPI-5482]
gi|46577030|sp|Q8A254.1|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 482
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD +EITG+ DSR+V AG LF+ G +TDGH Y+ A +
Sbjct: 1 MLLNELL--KAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQ 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 1_1_14]
gi|383125038|ref|ZP_09945697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 1_1_6]
gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 1_1_6]
gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 1_1_14]
Length = 482
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD +EITG+ DSR+V AG LF+ G +TDGH Y+ A +
Sbjct: 1 MLLNELL--KAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQ 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
43183]
gi|167698276|gb|EDS14855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides stercoris ATCC 43183]
Length = 482
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + PV + G E +ITG+ DSR+V+AG LF+ G +TDGH Y+ A +
Sbjct: 1 MKLSELL--KAIQPVQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIE 58
Query: 300 RGAVAVVA 307
+GA+AV+
Sbjct: 59 KGAIAVLC 66
>gi|373454598|ref|ZP_09546464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dialister
succinatiphilus YIT 11850]
gi|371935873|gb|EHO63616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dialister
succinatiphilus YIT 11850]
Length = 503
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+L+EL+ + VV V G +VEI + DSR V G LF+C G DGH ++ A ++
Sbjct: 3 TLSELIRMTPVV--KVLGSADVEIKDVTADSRKVVEGGLFICLSGAHVDGHDFVKAAVEK 60
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA A+VAS++ID+ ++ V V+DT + +P F
Sbjct: 61 GAAAIVASRDIDVPSSV---TAVYVKDTRKAMEDMVPFF 96
>gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides clarus YIT 12056]
gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides clarus YIT 12056]
Length = 482
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V G E +ITG+ DSR+V+AG LF+ G +TDGH Y+ A +
Sbjct: 1 MKLTELL--KAIQPVQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIE 58
Query: 300 RGAVAVVA 307
+GA+AV+
Sbjct: 59 QGAIAVLC 66
>gi|383753243|ref|YP_005432146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365295|dbj|BAL82123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 500
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LAEL++ S + GD +EITGI+HDSR V G LFVC G DGH ++ +A ++G
Sbjct: 7 LAELVEGS-----VIKGDKNIEITGIEHDSRKVEEGTLFVCIAGFHVDGHKFIPQAVEKG 61
Query: 302 AVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
A A++ ++ I+ E A++ V + L +P F
Sbjct: 62 AKAILTTRSIEEVEVPEGIAVLQVPELKEALDTIVPFF 99
>gi|393782273|ref|ZP_10370458.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides salyersiae CL02T12C01]
gi|392673544|gb|EIY67003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides salyersiae CL02T12C01]
Length = 483
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V G ++EITGI DSR + AG LF+ G +TDGH Y+ A +
Sbjct: 1 MKLNELL--KAIQPVQVVGASDIEITGINIDSRQIEAGHLFMAMRGTQTDGHAYIPAAIE 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
V453]
gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
V453]
Length = 502
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L L + +++ ++ G VEIT + DSR + G LFVC G DGH Y+ A +
Sbjct: 1 MNLKSLTE--RLILKTITGSTAVEITNLDTDSRAIRPGGLFVCVPGFNVDGHDYIEHAIQ 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GAVA++A KE + E G + V DT VLP F G
Sbjct: 59 NGAVAIMAEKE--LPELPGNITRITVPDTRRVLPILANSFFG 98
>gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
selenitireducens MLS10]
gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
selenitireducens MLS10]
Length = 489
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M + ELLD + P V GDL+ +I ++ DSR+VS G LF C G DGH Y ++A
Sbjct: 2 MKIRELLDH--ISPCRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAAD 59
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
RGAVA + +E+ ++ T +IV D+ + F
Sbjct: 60 RGAVAFLTEEELPVDGT-----QLIVRDSRRAMAQLAARF 94
>gi|406983586|gb|EKE04756.1| hypothetical protein ACD_20C00007G0017 [uncultured bacterium]
Length = 496
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI-DIEETLGC 319
+E+TGI ++S+ + G++F+C VG DGH ++ +A ++GA A++A K++ DI
Sbjct: 21 NIEVTGISYNSKTIQQGNIFICLVGEHVDGHNFIIQAVEKGASAIIAQKQLKDIN----- 75
Query: 320 KALVIVEDTNLVLPHWLPLF 339
++IVEDT L L +F
Sbjct: 76 IPVLIVEDTQLTLSQVASVF 95
>gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides fluxus YIT 12057]
gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides fluxus YIT 12057]
Length = 482
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL + PV + G ++EITG+ DSR++ AG LF+ G +TDGH Y+ A +
Sbjct: 1 MKLSDLL--KAIQPVQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYIPAAIE 58
Query: 300 RGAVAVVA 307
+GAVA++
Sbjct: 59 KGAVAILC 66
>gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides helcogenes P 36-108]
gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides helcogenes P 36-108]
Length = 483
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL + PV + G ++EITG+ DSR++ AG LF+ G +TDGH Y+ A +
Sbjct: 3 MKLSDLL--KTIQPVHITGSTDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYIPAAIE 60
Query: 300 RGAVAVVA 307
+GA+AV+
Sbjct: 61 KGAIAVLC 68
>gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [delta proteobacterium NaphS2]
gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [delta proteobacterium NaphS2]
Length = 500
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL++ + +S G L++EI+ I +DSR + GDLFV G+ DGH ++ +A +
Sbjct: 1 MLLRELIENINIKTLS--GGLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVR 58
Query: 300 RGAVAVVASKEID-IEETLGCKA-----LVIVEDTNLVLPHWLPLFIG 341
+GAVAV++ + D I L C++ L+ VED+ L F G
Sbjct: 59 KGAVAVLSELKTDAIARKLACESDQMPVLLQVEDSRKALSQLAATFYG 106
>gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
Y412MC10]
gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
Y412MC10]
Length = 502
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+++ ++ G L V+IT + DSR + G +FVC G DGH Y +A + GAVA+VA +
Sbjct: 9 RLILKTITGSLSVDITNLDTDSREIRPGGMFVCVPGYHVDGHDYAEQAIRNGAVAIVAER 68
Query: 310 EID-IEETLGCKALVIVEDTNLVLPHWLPLFIG 341
E+ + E + L+ V DT +LP F G
Sbjct: 69 ELSGLSENV---TLITVPDTRRILPILANAFYG 98
>gi|339629731|ref|YP_004721374.1| UDP-N-acetylmuramyl tripeptide synthetase [Sulfobacillus
acidophilus TPY]
gi|379007154|ref|YP_005256605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sulfobacillus acidophilus DSM 10332]
gi|339287520|gb|AEJ41631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfobacillus
acidophilus TPY]
gi|361053416|gb|AEW04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sulfobacillus acidophilus DSM 10332]
Length = 493
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
A +L ++VV GD V + GIQ+DSR V GDLF G TDGHLY EA +RG
Sbjct: 6 FANILSHAQVV-----GDGSVTVGGIQYDSRRVEKGDLFCAIPGFHTDGHLYCQEAYQRG 60
Query: 302 AVAVVASKEIDIEETLGCKALVIVE 326
AVA + + + + G AL++ E
Sbjct: 61 AVAFLVERADTVPK--GAPALIVPE 83
>gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|404489009|ref|YP_006713115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|81385639|sp|Q65JY4.1|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52347996|gb|AAU40630.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 488
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K VP S G + +IT I+ DSR V G LFVC G DGH Y +A +
Sbjct: 1 MKLTKLLTYLKNVP-SYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAE 59
Query: 300 RGAVAVVASKEID 312
+GA A+VA +E+D
Sbjct: 60 KGAAAIVAEREVD 72
>gi|452991827|emb|CCQ96788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium ultunense
Esp]
Length = 512
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL +V+ + +V I GI ++S+ V+ GDLFVC G KTDGH Y+ +A +
Sbjct: 1 MKLYELLQSVEVI--ESWNKKDVNIKGIAYNSKKVNFGDLFVCIKGNKTDGHKYIPQAIE 58
Query: 300 RGAVAVVA 307
+GAVA+V
Sbjct: 59 KGAVAIVV 66
>gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
gi|423220324|ref|ZP_17206819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides caccae CL03T12C61]
gi|149128175|gb|EDM19395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides caccae ATCC 43185]
gi|392623401|gb|EIY17504.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides caccae CL03T12C61]
Length = 482
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL + PV V G+ ++EITGI DSR+V AG LF+ G + DGH Y+ A +
Sbjct: 1 MLLNKLL--KAIQPVQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYIPTAIE 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_2_4]
gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_2_4]
Length = 482
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD ++EITG+ DSR+V AG LF+ G + DGH Y+ A
Sbjct: 1 MLLKELL--KAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIA 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
29799]
gi|150270634|gb|EDM97943.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pseudoflavonifractor capillosus ATCC 29799]
Length = 486
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL S V + + D +VEI+GI +D+R + G+LFV G KTDGH +L EA K
Sbjct: 1 MRLKVLL--SGVALLGGFADEDVEISGISYDTRTIRPGELFVALTGYKTDGHRFLREAVK 58
Query: 300 RGAVAVVASK 309
+GA AV+ K
Sbjct: 59 KGAAAVICHK 68
>gi|423214888|ref|ZP_17201416.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides xylanisolvens CL03T12C04]
gi|392692151|gb|EIY85389.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides xylanisolvens CL03T12C04]
Length = 482
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD ++EITG+ DSR+V AG LF+ G + DGH Y+ A
Sbjct: 1 MLLKELL--KAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIA 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Bacteroides xylanisolvens XB1A]
Length = 482
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD ++EITG+ DSR+V AG LF+ G + DGH Y+ A
Sbjct: 1 MLLKELL--KAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIA 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. D22]
gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. D22]
Length = 482
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD ++EITG+ DSR+V AG LF+ G + DGH Y+ A
Sbjct: 1 MLLKELL--KAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIA 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_22]
gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides ovatus SD CC 2a]
gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides xylanisolvens SD CC 1b]
gi|345511025|ref|ZP_08790580.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. D1]
gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. D1]
gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_22]
gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides ovatus SD CC 2a]
gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides xylanisolvens SD CC 1b]
Length = 482
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD ++EITG+ DSR+V AG LF+ G + DGH Y+ A
Sbjct: 1 MLLKELL--KAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIA 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|383788846|ref|YP_005473415.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldisericum exile AZM16c01]
gi|381364483|dbj|BAL81312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldisericum exile AZM16c01]
Length = 479
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+YG+LE GI+ DSRV+ GDLFV G DGH ++ +A KRGAV V+ K+++I E
Sbjct: 15 IYGNLERVFFGIKTDSRVIENGDLFVALKGENFDGHDFVFDAVKRGAVGVIIEKDLEINE 74
>gi|336404500|ref|ZP_08585195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 1_1_30]
gi|335942297|gb|EGN04144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 1_1_30]
Length = 482
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD ++EITG+ DSR+V AG LF+ G + DGH Y+ A
Sbjct: 1 MLLKELL--KAIRPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIA 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|385799624|ref|YP_005836028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Halanaerobium praevalens DSM 2228]
gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Halanaerobium praevalens DSM 2228]
Length = 486
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
G+++ EI+ I++DSR + G+LF+ G K DGH Y+S+A + GA A++ KE+++ E
Sbjct: 17 GNIKKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYISQAIENGATAIIIEKELEVYE 74
>gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella tannerae ATCC 51259]
gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella tannerae ATCC 51259]
Length = 487
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL K+ P+ G L ++I G+ DSR+V G+LFV G +TDGH +++ A +
Sbjct: 2 MKLSDLLQ--KISPLETRGSLTIDINGVNMDSRLVEKGNLFVAVKGTQTDGHAFIAGAIE 59
Query: 300 RGAVAVVASKEIDIE 314
+GA A++ S+ I E
Sbjct: 60 KGASAILVSEPIPAE 74
>gi|393786145|ref|ZP_10374283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides nordii CL02T12C05]
gi|392660509|gb|EIY54121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides nordii CL02T12C05]
Length = 485
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + P+ V G ++EITG+ DSR V AG LF+ G +TDGH Y+ A +
Sbjct: 1 MKLNELL--KAIQPIQVVGASDIEITGVNIDSRQVEAGHLFMAMRGTQTDGHAYIPVAIE 58
Query: 300 RGAVAVVA 307
+GA+AV+
Sbjct: 59 KGAIAVLC 66
>gi|403379026|ref|ZP_10921083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus sp. JC66]
Length = 495
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M + EL S + P + G+ + +I GIQ DSR V+ GDLF+C G DGH Y +A
Sbjct: 1 MQIKEL--ASLITPSKLTGNEQAKIKGIQIDSRKVNEGDLFICLTGSLKDGHDYARQAID 58
Query: 300 RGAVAVVASKEIDIE 314
GA A+V K +++E
Sbjct: 59 NGATALVTEKRLEVE 73
>gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
DSM 18315]
gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
DSM 18315]
Length = 490
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 14/104 (13%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL+ +V+ V G+ +VEI+GIQ DSR V G LFV G DGH Y+ A +
Sbjct: 1 MELKELIHPLEVL--EVVGNADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIR 343
+GA A+V C+ + ++ D N+ + P+FI ++
Sbjct: 59 KGAAAIV------------CEEIPVLPDENMQVSESKPVFIRVK 90
>gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. oral taxon 158 str. F0412]
gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. oral taxon 158 str. F0412]
Length = 494
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V G+ VEI I DSR V AG LF+ G DGH Y+++A + GAVAV+ SK +++
Sbjct: 16 VTGNTAVEILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAVAVLVSKPVEVS- 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
G ++ VEDT + +P F
Sbjct: 75 --GDICVITVEDTRTAMMACVPYF 96
>gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
18228]
gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
18228]
Length = 488
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L + V G+L+ EI+GIQ DSR + GDLFV G +TDGH Y+ +A +
Sbjct: 1 MKLGNIL--QAITTGMVKGNLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYIGKAIE 58
Query: 300 RGAVAVVA 307
+GA AVV
Sbjct: 59 KGATAVVC 66
>gi|452974581|gb|EME74401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sonorensis L12]
Length = 488
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K P S G + +IT I+ DSR V G LFVC G DGH Y +A +
Sbjct: 1 MKLTKLLTYLKNEP-SYNGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHEYARQAAE 59
Query: 300 RGAVAVVASKEID 312
RGA A+VA +E+D
Sbjct: 60 RGAAAIVAEREVD 72
>gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium kluyveri DSM 555]
gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016]
gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555]
gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 485
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+ G + I IQ+DSR V GDLFVC G TDGH Y+ A K GA A+V SK++D
Sbjct: 15 IKGKNNLNIGEIQYDSRKVKTGDLFVCIAGYVTDGHKYIESAFKNGAAAIVLSKKVD 71
>gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella bryantii B14]
gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella bryantii B14]
Length = 487
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + K P+ + GD+E E+TG+ DSR + G LF+ G +TDGH Y+++A +
Sbjct: 1 MKLQELLYDIK--PIQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGHAYIAKAIE 58
Query: 300 RGAVAVV 306
GA A++
Sbjct: 59 LGATAIL 65
>gi|335040561|ref|ZP_08533687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldalkalibacillus thermarum TA2.A1]
gi|334179531|gb|EGL82170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldalkalibacillus thermarum TA2.A1]
Length = 508
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
+EI+ I+ DSR V G LFVC G + DGH ++S+A +RGAVA++A K +D+
Sbjct: 35 IEISSIELDSRQVKPGSLFVCIPGFQVDGHQFVSQAIERGAVAILAQKPLDVP-----VP 89
Query: 322 LVIVEDTNLVLPHWLPLFIG 341
++IV DT L + F G
Sbjct: 90 VIIVPDTRRALAYVANRFYG 109
>gi|423281157|ref|ZP_17260068.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 610]
gi|404583321|gb|EKA88002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 610]
Length = 485
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIHPVKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIE 58
Query: 300 RGAVAVVA 307
+GA+A++
Sbjct: 59 KGAIAILC 66
>gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Marivirga tractuosa DSM 4126]
gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Marivirga tractuosa DSM 4126]
Length = 488
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
KV +SV G ++ I IQ DSR+V AGD+FV G + DGH Y+S+A ++GAVA+V
Sbjct: 10 KVKLISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYISKAIEQGAVAIVC 67
>gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Veillonella sp. 3_1_44]
gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Veillonella sp. 3_1_44]
Length = 496
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 240 MSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M + L D K + V G+ VEI + DSR V AG LF+ G DGH Y+++A
Sbjct: 1 MYMKHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAI 60
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+ GAVAV+ SK +D+ G ++ VEDT + +P F
Sbjct: 61 EAGAVAVLVSKPVDVS---GDVCVITVEDTRAAMMVCVPYF 98
>gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Alkaliphilus metalliredigens QYMF]
gi|167017291|sp|A6TS66.1|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
metalliredigens QYMF]
Length = 494
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL+E + + + G+ + I I +DSR V+ LF+C G +TDGH ++ +A K
Sbjct: 1 MKLMDLLEE--IDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHFIDQAIK 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA+A+VA K++ L V V+DT V+ F G
Sbjct: 59 KGAIAIVAQKDMT---GLDGVTWVQVKDTRQVMAQLGSTFYG 97
>gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
Length = 485
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIHPVKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIE 58
Query: 300 RGAVAVVA 307
+GA+A++
Sbjct: 59 KGAIAILC 66
>gi|442805607|ref|YP_007373756.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741457|gb|AGC69146.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 484
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++L++ ++ + GD++ EI+ I +DSR G LFVC G KTDGH Y+ A
Sbjct: 1 MKLSKLIEGLDILKIE--GDVDKEISRIVYDSRRAVPGSLFVCIDGFKTDGHKYIQSAMD 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GAVA + K++ + E + ++ V DT L H F
Sbjct: 59 NGAVAFLVQKDVPVLENM---TVIKVPDTRYALAHVSAAF 95
>gi|383811197|ref|ZP_09966667.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. oral taxon 306 str. F0472]
gi|383356164|gb|EID33678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. oral taxon 306 str. F0472]
Length = 485
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + P ++ G EVEITG+ DSR ++ G LF+ G + DGH ++ +A +
Sbjct: 1 MKLSELL--KNITPTTIKGSTEVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVI-VEDTNLVLPHWLPLFIG 341
GAVAV+ D+ +TL + VE T LF G
Sbjct: 59 LGAVAVLLE---DMPDTLNENVTYVQVESTEKTAGEVATLFYG 98
>gi|359411807|ref|ZP_09204272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. DL-VIII]
gi|357170691|gb|EHI98865.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. DL-VIII]
Length = 483
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + K +S G++++++ I +DSR V +FVC G DGH Y+ EA K
Sbjct: 1 MKLYELLKDMKYELIS--GNVDIDVANISYDSRKVIESSMFVCIKGANVDGHDYIKEAIK 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+GA+A+V +E++++ L+ VE++ + L F
Sbjct: 59 KGALAIVIDEELELKSR--NITLIKVENSKIALASLASSF 96
>gi|366166621|ref|ZP_09466376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acetivibrio cellulolyticus CD2]
Length = 484
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL+ + ++V V+ GDL +E+ I +DSR +G LFVC G K DGH ++ +A +
Sbjct: 1 MLLKELIKDLEIVDVT--GDLNLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFIPQAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
G A++ +E+++ E + ++ V+DT L
Sbjct: 59 NGTRALLVQREVEVPEGI---TVIRVDDTRYAL 88
>gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
[Symbiobacterium thermophilum IAM 14863]
gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
[Symbiobacterium thermophilum IAM 14863]
Length = 496
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 249 SKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVAS 308
S + PV V +V +TGI DSR V GDLFVC G D H ++ +A +RGAVAVV
Sbjct: 3 SALDPVQVLEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVVTQ 62
Query: 309 KEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+ + +G +V D L L F G
Sbjct: 63 RPWAVPTGIGA---AVVPDARLALSALADRFYG 92
>gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus sp. BT1B_CT2]
gi|423682058|ref|ZP_17656897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus licheniformis WX-02]
gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacillus sp. BT1B_CT2]
gi|383438832|gb|EID46607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus licheniformis WX-02]
Length = 488
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K P S G + +IT I+ DSR V G LFVC G DGH Y +A +
Sbjct: 1 MKLTKLLTYLKNAP-SYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAE 59
Query: 300 RGAVAVVASKEID 312
+GA A+VA +E+D
Sbjct: 60 KGAAAIVAEREVD 72
>gi|423304796|ref|ZP_17282795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides uniformis CL03T00C23]
gi|423310090|ref|ZP_17288074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides uniformis CL03T12C37]
gi|392682730|gb|EIY76072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides uniformis CL03T12C37]
gi|392683460|gb|EIY76795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides uniformis CL03T00C23]
Length = 482
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL + PV + G +EITG+ DSR++ G LF+ G +TDGH Y+ A
Sbjct: 1 MRLSDLL--QTIQPVQITGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAID 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides finegoldii DSM 17565]
gi|423301215|ref|ZP_17279239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides finegoldii CL09T03C10]
gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides finegoldii DSM 17565]
gi|408471816|gb|EKJ90345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides finegoldii CL09T03C10]
Length = 483
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV + GD +EI GI DSR+V AG LF+ G + DGH Y+ A
Sbjct: 1 MLLNELL--KAIQPVQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYIPAAIS 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 482
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL + PV + G +EITG+ DSR++ G LF+ G +TDGH Y+ A
Sbjct: 1 MRLSDLLQT--IQPVRITGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAID 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
Length = 482
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL + PV + G +EITG+ DSR++ G LF+ G +TDGH Y+ A
Sbjct: 1 MRLSDLL--QTIQPVRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAID 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella buccae D17]
gi|402307311|ref|ZP_10826337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. MSX73]
gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella buccae D17]
gi|400378825|gb|EJP31676.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. MSX73]
Length = 483
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL K P ++ GD EVEITGI DSR + G LFV G + DGH ++S+A +
Sbjct: 1 MELSKLLKNIK--PTAIVGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIE 58
Query: 300 RGAVAVVA 307
GA AV+
Sbjct: 59 LGAKAVLC 66
>gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus sp. JDR-2]
gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
Length = 495
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LAELL +++ G + EI GI+ DSR V G LF+C G DGH Y +A +G
Sbjct: 6 LAELLITARLT-----GAGDTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYAPQAAAKG 60
Query: 302 AVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
AVA V +E++++ +IV+D+ L + F G
Sbjct: 61 AVAFVVERELELD-----APQLIVKDSRLAMAVLADHFYG 95
>gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfobacca acetoxidans DSM 11109]
gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
ligase [Desulfobacca acetoxidans DSM 11109]
Length = 531
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+LA+LL K + ++GD +V + G+ + S V++G++FV G +TDGHLY+ +A +R
Sbjct: 11 NLAQLLSGLKYL--RIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIER 68
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA VV ++ + C V V DT L L H F
Sbjct: 69 GAAVVVLEDAVEPTPGVVC---VQVPDTRLALAHMAAAF 104
>gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
33574]
gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
33574]
Length = 483
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL K P ++ GD EVEITGI DSR + G LFV G + DGH ++S+A +
Sbjct: 1 MELSKLLKNIK--PTAIVGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIE 58
Query: 300 RGAVAVVA 307
GA AV+
Sbjct: 59 LGAKAVLC 66
>gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl tripeptide synthetase [Veillonella parvula DSM
2008]
gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
2008]
Length = 494
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V G+ VEI + DSR V AG LF+ G DGH Y+++A + GAVAV+ SK +++
Sbjct: 16 VEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVESGAVAVLVSKPVEVSS 75
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
+ ++ VEDT + +P F
Sbjct: 76 DV---CVITVEDTRAAMMSCVPYF 96
>gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria grayi DSM 20601]
gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria grayi DSM 20601]
Length = 494
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
DL EIT I+ DSR V +G LF+C G DGH + +A+ GA A++A KEID+
Sbjct: 21 DLSGEITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGATAILAEKEIDV 75
>gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Dialister invisus DSM 15470]
gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Dialister invisus DSM 15470]
Length = 499
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 242 LAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+ +L+D K P+ + G+ +V I + DSR V G LF C G DGH + + A +
Sbjct: 1 MKQLIDLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAEN 60
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA A++A K+ID+ + ++ V DT + +P F
Sbjct: 61 GAAAIIAEKKIDVASDV---TIIYVADTRKAMEDIVPYF 96
>gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
gi|149752172|gb|EDM62103.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Dorea longicatena DSM 13814]
Length = 487
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L +LL+ E +VV GD ++E+T + +DSR V+ G +FVC G +DGH Y+ +
Sbjct: 1 MKLTQLLERLEYEVVQ----GDDQIEVTELINDSRKVTEGSVFVCISGAVSDGHAYVQQV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
++GA AV+ K+++ E L ++ VE+T L + G
Sbjct: 57 AEKGAAAVIVEKDVEAPEGL---TVIKVENTRYALALTSAAYFG 97
>gi|424665906|ref|ZP_18102942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 616]
gi|404574159|gb|EKA78910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 616]
Length = 485
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TFIHPVKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIE 58
Query: 300 RGAVAVVA 307
+GA+A++
Sbjct: 59 KGAIAILC 66
>gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium thermocellum ATCC 27405]
gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
DSM 2360]
gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
JW20]
gi|385778590|ref|YP_005687755.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium thermocellum
DSM 1313]
gi|419723582|ref|ZP_14250697.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
AD2]
gi|419724593|ref|ZP_14251655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
YS]
gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
ATCC 27405]
gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
DSM 2360]
gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
JW20]
gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
DSM 1313]
gi|380772140|gb|EIC05998.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
YS]
gi|380780264|gb|EIC09947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
AD2]
Length = 485
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L+ V+ V GD++VEI I +DSR AG LFVC G K DGH ++ +A +
Sbjct: 1 MKLKDLVKGLNVLEVE--GDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKFIPQAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
G A + K++D+ + +V V+DT L +F G
Sbjct: 59 NGTRAFLVQKDVDVPDD---ATVVRVKDTRYALASVADIFFG 97
>gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mahella australiensis 50-1 BON]
gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mahella australiensis 50-1 BON]
Length = 484
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL++ + V+ GD+ ++I I +DSR V+ G LFV G KTDGH ++ +A
Sbjct: 1 MELIKLLNDIEYYTVN--GDVHLDIKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAID 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
GAVAVV ++++ + + + ++V VED+ L L
Sbjct: 59 NGAVAVVVTRDVPLPDGV---SVVKVEDSRLSLA 89
>gi|384914879|ref|ZP_10015585.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
fumariolicum SolV]
gi|384527255|emb|CCG91453.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
fumariolicum SolV]
Length = 495
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+++L S + P+++ G ++ EI I +DSR V G LF G+KTDGH Y+ EA
Sbjct: 1 MKLSDVL--SDLQPLAIKGSIDWEINNIVYDSRKVVEGSLFFAWKGQKTDGHRYIEEAIG 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
RGA V+ S E+ +T + V+D VL +F G
Sbjct: 59 RGARGVICS-EMPAWQTSKQTTFIQVKDPRRVLGKVASVFYG 99
>gi|423342821|ref|ZP_17320535.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides johnsonii CL02T12C29]
gi|409217076|gb|EKN10055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides johnsonii CL02T12C29]
Length = 490
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL+ +V V G+ +VEI GIQ DSR V G LFV G DGH Y+ A +
Sbjct: 1 MELKELIHPLEVF--EVVGNADVEILGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIR 343
+GA A+V C+ + ++ D N+ + P+FI ++
Sbjct: 59 KGAAAIV------------CEEIPVLPDENMQVSESKPVFIRVK 90
>gi|423269848|ref|ZP_17248820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL05T00C42]
gi|423272698|ref|ZP_17251645.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL05T12C13]
gi|392700694|gb|EIY93856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL05T00C42]
gi|392708612|gb|EIZ01718.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL05T12C13]
Length = 485
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMRGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 490
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL+ + V G E+EIT + +DSR V+ G +FVC G +DGH Y+ E K
Sbjct: 1 MKLTALLERLQYEVVQ--GTKEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYIEEVGK 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
+GA AV+ K+++ + + ++ VEDT
Sbjct: 59 KGAAAVIVEKDVEAPKHM---TVIRVEDT 84
>gi|336407788|ref|ZP_08588284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 2_1_56FAA]
gi|375356690|ref|YP_005109462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase
[Bacteroides fragilis 638R]
gi|383116602|ref|ZP_09937350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 3_2_5]
gi|423282436|ref|ZP_17261321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 615]
gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 3_2_5]
gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
te ligase [Bacteroides fragilis 638R]
gi|335944867|gb|EGN06684.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 2_1_56FAA]
gi|404582004|gb|EKA86699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis HMW 615]
Length = 485
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
gi|189431764|gb|EDV00749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides coprocola DSM 17136]
Length = 484
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +++ V + G+++ EI GIQ DSR+V AG LFV G +TDGH Y+ +A +
Sbjct: 1 MKLENIIESVNVCEIK--GNVDKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAYIEKAIE 58
Query: 300 RGAVAVVA 307
+GA A+V
Sbjct: 59 KGASAIVC 66
>gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides fragilis NCTC 9343]
gi|81317077|sp|Q5LIJ3.1|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelateligase [Bacteroides fragilis NCTC 9343]
Length = 485
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|423259354|ref|ZP_17240277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL07T00C01]
gi|423263674|ref|ZP_17242677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL07T12C05]
gi|387776934|gb|EIK39034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL07T00C01]
gi|392707096|gb|EIZ00216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL07T12C05]
Length = 485
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_16]
gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_16]
Length = 485
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides fragilis YCH46]
gi|81383834|sp|Q64ZL7.1|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacteroides fragilis YCH46]
Length = 485
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermosediminibacter oceani DSM 16646]
gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermosediminibacter oceani DSM 16646]
Length = 485
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
V V G EVEI+ I +DSR V G LFV G K DGH ++ +A GAV V+ KEI++
Sbjct: 14 VDVKGSTEVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFIGQAINNGAVVVIGEKEINL 73
Query: 314 EETLGCKALVIVEDTNLVLPHWLPLFIG 341
E + + V+++ L LF G
Sbjct: 74 PEDV---LYIKVKNSRKALSEASSLFFG 98
>gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella melitensis bv. 1 str. 16M]
gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella melitensis bv. 1 str. 16M]
Length = 499
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 235 EPKFKMSLAELLDESKVVPVSVYGDL------EVEITGIQHDSRVVSAGDLFVCCVGRKT 288
EP F M++ K+ ++++ +L EVEITGI DSR V G LF G K
Sbjct: 5 EPGFGMTM-------KLKEIALFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKA 57
Query: 289 DGHLYLSEADKRGAVAVVASKEIDIEET 316
DG ++ ++A KRGAVA++A K+ I +
Sbjct: 58 DGAVFAADAAKRGAVAIIAGKDTAIADA 85
>gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella melitensis bv. 2 str. 63/9]
gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella melitensis bv. 2 str. 63/9]
Length = 499
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 235 EPKFKMSLAELLDESKVVPVSVYGDL------EVEITGIQHDSRVVSAGDLFVCCVGRKT 288
EP F M++ K+ ++++ +L EVEITGI DSR V G LF G K
Sbjct: 5 EPGFGMTM-------KLKEIALFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKA 57
Query: 289 DGHLYLSEADKRGAVAVVASKEIDIEET 316
DG ++ ++A KRGAVA++A K+ I +
Sbjct: 58 DGAVFAADAAKRGAVAIIAGKDTAIADA 85
>gi|423248263|ref|ZP_17229279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL03T00C08]
gi|423253212|ref|ZP_17234143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL03T12C07]
gi|392657112|gb|EIY50749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL03T12C07]
gi|392660370|gb|EIY53984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides fragilis CL03T00C08]
Length = 485
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVDSGHLFMAMRGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Butyrivibrio crossotus DSM 2876]
gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Butyrivibrio crossotus DSM 2876]
Length = 490
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL++ + ++ G+++++I + +DSR A D+FVC G +DGH Y+S+
Sbjct: 1 MKLSKLLEKLEYEVLN--GNVDIDIENLVYDSRKAGALDVFVCVTGAVSDGHTYISDVAG 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+G +A+V K+I++ E L L+ DT L F
Sbjct: 59 KGVLAIVVQKDIEVTEELKDITLIKTADTRYALALMSAAF 98
>gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella multiformis DSM 16608]
gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella multiformis DSM 16608]
Length = 520
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL K P++++G+ +VEI G+ DSR + G LFV G + DGH ++ +A
Sbjct: 37 MKLSELLRNVK--PIAIHGNADVEIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFIGKAVA 94
Query: 300 RGAVAVV 306
+GAVAV+
Sbjct: 95 QGAVAVL 101
>gi|357043587|ref|ZP_09105278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella histicola F0411]
gi|355368251|gb|EHG15672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella histicola F0411]
Length = 485
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL K P++V+GD++++I G+ DSR + G LF+ G + DGH ++++A
Sbjct: 1 MKLSELLKNVK--PIAVHGDIDIDIKGVNIDSRKIENGHLFIAMKGTQVDGHKFINKAIA 58
Query: 300 RGAVAVVASKEIDIEETL 317
GA A++ D+ ETL
Sbjct: 59 LGATAILLE---DMPETL 73
>gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357044610|ref|ZP_09106259.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paraprevotella clara YIT
11840]
gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355532417|gb|EHH01801.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paraprevotella clara YIT
11840]
Length = 485
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL VV V+ GD ITGI DSR+V GDLFV G + DGH Y+ +A +
Sbjct: 3 MELDILLKSVSVVRVT--GDTVRNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVE 60
Query: 300 RGAVAVVA 307
+GAVAVV
Sbjct: 61 KGAVAVVC 68
>gi|423081345|ref|ZP_17069953.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
002-P50-2011]
gi|423084596|ref|ZP_17073096.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
050-P50-2011]
gi|357551011|gb|EHJ32815.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
002-P50-2011]
gi|357552166|gb|EHJ33941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
050-P50-2011]
Length = 484
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
++V G+L ++I +Q+DSR V+ G LF+C G +DGH Y+ +A ++GA A + ++++I
Sbjct: 13 INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEEDVEI 72
Query: 314 EETLGCKALVIVEDT 328
+ GC + V+DT
Sbjct: 73 K---GC-TFIKVKDT 83
>gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella sp. F5/99]
gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella sp. F5/99]
Length = 499
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 235 EPKFKMSLAELLDESKVVPVSVYGDL------EVEITGIQHDSRVVSAGDLFVCCVGRKT 288
EP F M++ K+ ++++ +L EVEITGI DSR V G LF G K
Sbjct: 5 EPGFGMTM-------KLKEIALFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKA 57
Query: 289 DGHLYLSEADKRGAVAVVASKEIDIEET 316
DG ++ ++A KRGAVA+VA K+ I +
Sbjct: 58 DGAVFAADAVKRGAVAIVAGKDTAIADA 85
>gi|416998999|ref|ZP_11939668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella parvula ACS-068-V-Sch12]
gi|333977152|gb|EGL78011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella parvula ACS-068-V-Sch12]
Length = 494
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V G+ +EI + DSR V AG LF+ G DGH Y+++A + GAVAV+ SK ++I
Sbjct: 16 VEGNTAIEILDVTADSRAVKAGSLFIALDGATVDGHDYVNKAVEAGAVAVLVSKPVEISS 75
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
+ ++ VEDT + +P F
Sbjct: 76 DV---CVITVEDTRAAMMSCVPYF 96
>gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-23m63]
gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium difficile NAP08]
gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium difficile NAP07]
gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium difficile NAP08]
gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium difficile NAP07]
Length = 484
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
++V G+L ++I +Q+DSR V+ G LF+C G +DGH Y+ +A ++GA A + ++++I
Sbjct: 13 INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEEDVEI 72
Query: 314 EETLGCKALVIVEDT 328
+ GC + V+DT
Sbjct: 73 K---GC-TFIKVKDT 83
>gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
Length = 494
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G+ VE+ I DSR V AG LF+ G DGH Y+++A + GAVAV+ SK +++
Sbjct: 18 GNTAVEVLDITADSRAVKAGSLFIALDGATVDGHNYVNKAVEAGAVAVLVSKPVEVS--- 74
Query: 318 GCKALVIVEDTNLVLPHWLPLF 339
G ++ VEDT + +P F
Sbjct: 75 GDVCVITVEDTRKAMMACVPYF 96
>gi|386714171|ref|YP_006180494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Halobacillus halophilus DSM 2266]
gi|384073727|emb|CCG45220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Halobacillus halophilus DSM 2266]
Length = 491
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
++ + GI DSR GDLF+C G + DGH Y+ EA+ +GA V+A +E+
Sbjct: 21 DITVQGISMDSRSTGPGDLFICIHGVEADGHEYVQEAEAKGAAVVMAEREVTTS-----L 75
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
+VIV DT L +F G
Sbjct: 76 PVVIVNDTVRALAMAASIFYG 96
>gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-63q42]
gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile ATCC 43255]
Length = 484
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
++V G+L ++I +Q+DSR V+ G LF+C G +DGH Y+ +A ++GA A + ++++I
Sbjct: 13 INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEEDVEI 72
Query: 314 EETLGCKALVIVEDT 328
+ GC + V+DT
Sbjct: 73 K---GC-TFIKVKDT 83
>gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Mitsuokella multacida DSM 20544]
gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Mitsuokella multacida DSM 20544]
Length = 512
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA+LL ++ V+ G+ + ITGI+HDSR V G LFVC G DGH ++ +A G
Sbjct: 20 LADLLTDAVVI-----GNRDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAAG 74
Query: 302 AVAVVASKEIDIEETLGCKALVIVE 326
A A+V ++E D+E G L + E
Sbjct: 75 ASAIVTTRE-DVEVPEGIAVLRVKE 98
>gi|403070201|ref|ZP_10911533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Oceanobacillus sp. Ndiop]
Length = 492
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+ ELL K+ V+G + I +Q DSR V +F+C G DGH Y SEA +
Sbjct: 1 MNTYELLSSLKMK--QVFGMVPDHIQALQDDSRKVVKDSMFICIRGYTVDGHNYYSEAIR 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GA ++A +++DI+ L ALV+V+D+ L F G
Sbjct: 59 NGATVIIAEEKLDID--LDHVALVVVKDSKKALALLACKFYG 98
>gi|342215265|ref|ZP_08707915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. oral taxon 780 str. F0422]
gi|341588651|gb|EGS32036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella sp. oral taxon 780 str. F0422]
Length = 494
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
V P V G + ++ I DSR V G LF+C VG DGH ++++A + GAVA++ASK
Sbjct: 11 VSPKKVEGPVTSVVSHITADSRTVQEGSLFICLVGATVDGHSFVNKAIEDGAVAIIASKP 70
Query: 311 IDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+ + + + ++ V+DT L +P F
Sbjct: 71 VIVPDNV---TVLYVDDTRQALQDAVPFF 96
>gi|429765544|ref|ZP_19297829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium celatum DSM 1785]
gi|429185995|gb|EKY26958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium celatum DSM 1785]
Length = 483
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L ELL + V G LE EI IQ+DSR ++ GD+FVC G + DGH Y +A +
Sbjct: 1 MNLIELLQDVDFNLVK--GTLEKEINHIQYDSRKITNGDIFVCLSGFEVDGHDYAKKAIE 58
Query: 300 RGAVAVVASKEID 312
GA ++ K++D
Sbjct: 59 AGATVIICEKDLD 71
>gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. 16M]
gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. 16M]
Length = 499
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 235 EPKFKMSLAELLDESKVVPVSVYGDL------EVEITGIQHDSRVVSAGDLFVCCVGRKT 288
EP F M++ K+ ++++ +L EVEITGI DSR V G LF G K
Sbjct: 5 EPVFGMAM-------KLKEIALFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKA 57
Query: 289 DGHLYLSEADKRGAVAVVASKEIDIEET 316
DG ++ ++A KRGAVA++A K+ I +
Sbjct: 58 DGAVFAADAAKRGAVAIIAGKDTAIADA 85
>gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
11841]
gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
11841]
Length = 485
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL VV V GD ITGI DSR+V GDLFV G + DGH Y+ +A +
Sbjct: 3 MELDILLKSVSVVRVE--GDTARNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIE 60
Query: 300 RGAVAVVA 307
+GAVAVV
Sbjct: 61 KGAVAVVC 68
>gi|340347385|ref|ZP_08670494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella dentalis DSM 3688]
gi|339609477|gb|EGQ14349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella dentalis DSM 3688]
Length = 501
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 235 EPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYL 294
+P M + ELL + P+++ G+ +VEITG+ DSR V G LFV G + DGHL++
Sbjct: 12 KPSKNMKIQELL--KNIRPLAMAGETDVEITGVDIDSRQVKDGHLFVAMKGTQVDGHLFI 69
Query: 295 SEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+A + GA AV+ +++ E+ LG V VE T LF G
Sbjct: 70 PKAIELGAKAVLC-EDMPTEKALGV-TYVQVESTEDAAGKVATLFYG 114
>gi|407473755|ref|YP_006788155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium acidurici 9a]
gi|407050263|gb|AFS78308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium acidurici 9a]
Length = 489
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L+D ++ V G L++EIT + +DSR G +FV G K DGH + E K
Sbjct: 1 MKLNKLIDIENLLDVK--GSLDIEITDVVYDSRKAKDGCVFVAIEGFKVDGHNFTEEVIK 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
+GA A++ ++ID+EE + ++ V+ T L L
Sbjct: 59 KGARAIIVQRDIDLEENI---TVIKVKSTRLALA 89
>gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium ljungdahlii DSM 13528]
gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium ljungdahlii DSM 13528]
Length = 482
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
V G+ ++ I IQ+DSR V +GD+FVC G TDGH Y+ +A K GA A+V S+E++
Sbjct: 15 VKGNDDLNIGEIQYDSREVKSGDVFVCIKGYVTDGHKYIDKAYKNGAAAIVISEEVE 71
>gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus NVH0597-99]
gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus NVH0597-99]
Length = 258
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 7/62 (11%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDG-----HLYLSEADKRGAVAVVASKEID 312
GD+ +EITG++ DSR +++GDLF+C G DG H ++ +A K GAVA++ ++I+
Sbjct: 17 GDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLEDRHQFVEDAVKNGAVALIVERDIN 74
Query: 313 IE 314
IE
Sbjct: 75 IE 76
>gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile 630]
gi|123174038|sp|Q182Z8.1|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile
630]
Length = 484
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
++V G+L ++I +Q+DSR V+ G LF+C G +DGH Y+ +A ++GA A + +++ I
Sbjct: 13 INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFIVEEDVAI 72
Query: 314 EETLGCKALVIVEDT 328
+ GC + V+DT
Sbjct: 73 K---GC-TFIKVKDT 83
>gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl tripeptide synthetase [Synechococcus sp.
JA-3-3Ab]
gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
JA-3-3Ab]
Length = 529
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 241 SLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
SL +LL+++ + P V G LE V++ G+ DSR V AGDLF+ G + DG ++ EA
Sbjct: 15 SLGQLLNQAGIQPQVVQGSLEGVQVRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALT 74
Query: 300 RGAVAVVASKE 310
RGAVA + ++E
Sbjct: 75 RGAVAALIAQE 85
>gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella ovis ATCC 25840]
gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella ovis ATCC 25840]
Length = 499
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 235 EPKFKMSLAELLDESKVVPVSVYGDL------EVEITGIQHDSRVVSAGDLFVCCVGRKT 288
EP F M++ K+ ++++ +L EVEITGI DSR V G LF G K
Sbjct: 5 EPGFGMTM-------KLKEIALFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKA 57
Query: 289 DGHLYLSEADKRGAVAVVASKEIDIEET 316
DG ++ ++A KRGAVA++A K+ I +
Sbjct: 58 DGAVFAADAVKRGAVAIIAGKDTAIADA 85
>gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
2308 A]
gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus NCTC 8038]
gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Brucella abortus bv. 5 str. B3196]
gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
2308 A]
gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus NCTC 8038]
gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Brucella abortus bv. 5 str. B3196]
Length = 499
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 235 EPKFKMSLAELLDESKVVPVSVYGDL------EVEITGIQHDSRVVSAGDLFVCCVGRKT 288
EP F M++ K+ ++++ +L EVEITGI DSR V G LF G K
Sbjct: 5 EPGFGMAM-------KLKEIALFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKA 57
Query: 289 DGHLYLSEADKRGAVAVVASKEIDIEET 316
DG ++ ++A KRGAVA++A K+ I +
Sbjct: 58 DGAVFAADAVKRGAVAIIAGKDTAIADA 85
>gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus Rock3-42]
gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus Rock3-42]
Length = 272
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 7/62 (11%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDG-----HLYLSEADKRGAVAVVASKEID 312
GD+ +EITG++ DSR +++GDLF+C G DG H ++ +A K GAVA++ ++I+
Sbjct: 31 GDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLEDRHQFVEDAVKNGAVALIVERDIN 88
Query: 313 IE 314
IE
Sbjct: 89 IE 90
>gi|410667608|ref|YP_006919979.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Thermacetogenium phaeum DSM 12270]
gi|409105355|gb|AFV11480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Thermacetogenium phaeum DSM 12270]
Length = 495
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
L V + G+ +DSR V G +FVC VG +TDGHLY+ +A RGA V K++
Sbjct: 20 LHVPVAGVHYDSRQVRPGYIFVCIVGYRTDGHLYIQDAIARGAAGFVIEKDV 71
>gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella denticola CRIS 18C-A]
gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella denticola CRIS 18C-A]
Length = 484
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL V P++++G+ +VEI G+ DSR + G LF+ G + DGH ++ +A +
Sbjct: 1 MKLSELL--KNVSPIAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVE 58
Query: 300 RGAVAVV 306
+GA AV+
Sbjct: 59 QGAAAVL 65
>gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
Length = 492
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSE 296
M L EL S ++ GD+ VEITG++ DSR +++GDLF+C G D H ++ +
Sbjct: 1 MKLKEL--ASLLLIKDTVGDMNVEITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVED 58
Query: 297 ADKRGAVAVVASKEIDIE 314
A K GAVA++ ++++IE
Sbjct: 59 AVKNGAVALIVERDVNIE 76
>gi|345881466|ref|ZP_08832984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella oulorum F0390]
gi|343919431|gb|EGV30178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella oulorum F0390]
Length = 484
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + P+ V GD E+EI G+ DSR + G LFV G + DGH Y+ +A +
Sbjct: 1 MKLNEML--RNITPLQVIGDAEMEIKGVNIDSRKIQHGHLFVAVKGTQVDGHQYIDKAIE 58
Query: 300 RGAVAVVA 307
+GA AV+
Sbjct: 59 QGATAVLC 66
>gi|404371431|ref|ZP_10976736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
7_2_43FAA]
gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
7_2_43FAA]
Length = 483
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G +E E+ IQ+DSR V+ GDLFVC G + DGH Y ++A + GA V+ K+IDI+
Sbjct: 17 GTVEKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYANKAIEAGAKVVLCEKKIDIKSE- 75
Query: 318 GCKALVIVE 326
G L++ E
Sbjct: 76 GVTVLLVNE 84
>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sputigena ATCC
35185]
gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sputigena ATCC
35185]
Length = 966
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+LAEL + V + GD +I I HDSR V+ G LFV G DGH ++++A ++
Sbjct: 3 TLAEL--AALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 60
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA A++ +EI+I E G A++ V + L +P F
Sbjct: 61 GACAILTEREIEIPE--GAAAVLRVPNLAAALEVIVPFF 97
>gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eremococcus coleocola ACS-139-V-Col8]
gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eremococcus coleocola ACS-139-V-Col8]
Length = 472
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M +L+D K V Y L+ + +TG++ DSR V GDLFV G TDGH Y+ +A
Sbjct: 1 MKAIKLMDVVKAVHAIDYTALDRFISVTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQA 60
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDT 328
K GAVA + SKE A+V+V+DT
Sbjct: 61 IKNGAVATLWSKEAQAAPADQI-AIVLVDDT 90
>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
sputigena ATCC 35185]
gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
sputigena ATCC 35185]
Length = 968
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+LAEL + V + GD +I I HDSR V+ G LFV G DGH ++++A ++
Sbjct: 5 TLAEL--AALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 62
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA A++ +EI+I E G A++ V + L +P F
Sbjct: 63 GACAILTEREIEIPE--GAAAVLRVPNLAAALEVIVPFF 99
>gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
gi|158447563|gb|EDP24558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Parvimonas micra ATCC 33270]
Length = 516
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL++ +++ + D+E EI I+++S+ VS D+FV G KTDGH+Y+ A K
Sbjct: 6 MKLKTLLEDLEILEIKGNLDIEKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIYIKSAKK 65
Query: 300 RGAVAVVASKEIDIE 314
+G A + +D++
Sbjct: 66 QGCYACIVEDFVDLD 80
>gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum C str. Eklund]
gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum C str. Eklund]
Length = 483
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G LE++I IQ+DSR +S D+FV G K DGH ++ +A GA +V SKE++I E +
Sbjct: 17 GTLELDINAIQYDSRKISESDVFVAIEGFKVDGHKFIEKAISEGAKVIVCSKEVEIHEEI 76
>gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii
L2-63]
Length = 488
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL V +V G+L EI+ I +DSR V G FVC G +DGH Y A +
Sbjct: 1 MKLKDLLIN---VEYTVQGNLNTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRYAKSAVE 57
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA A+V S +D E A+V VEDT L F G
Sbjct: 58 KGASALVISDSLDFEVPSDV-AVVKVEDTRYALSLMSIEFFG 98
>gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella sp. oral taxon 317 str. F0108]
gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella sp. oral taxon 317 str. F0108]
Length = 481
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L+ +L K P++V G+ EV++T + DSR V G LFV G + DGH ++S+A
Sbjct: 1 MTLSSILKNVK--PLNVVGNAEVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFISKAVA 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 QGAVAVLC 66
>gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium novyi NT]
gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Clostridium novyi NT]
Length = 483
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
GDLE+E++ I++DSR +S D+FV G DGH ++ +A GA +V SKEI+I++ +
Sbjct: 17 GDLELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFIEKAINEGAKVIVCSKEIEIKKGI 76
Query: 318 GCKALVIVEDTNLVLP 333
+ VE+T L
Sbjct: 77 ---TYIKVENTRKALA 89
>gi|407977700|ref|ZP_11158537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. HYC-10]
gi|407415953|gb|EKF37534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. HYC-10]
Length = 491
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
EIT I+ DSR V +G LFVC G DGH Y +A K GA A+VA + ++I E +
Sbjct: 23 EITSIEMDSREVKSGSLFVCIKGYTVDGHDYAEKAVKSGAAAIVAERPLNITEV----PV 78
Query: 323 VIVEDTNLVLPHWLPLFIG 341
+IV+ + L F G
Sbjct: 79 IIVKHSQRALARMADAFYG 97
>gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
infernorum V4]
gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
infernorum V4]
Length = 504
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 253 PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
P+ V G ++ EIT I +DSR VS G +F G+KTDGH Y+ EA ++ A A+V S+
Sbjct: 23 PLEVVGSVDCEITSISYDSRKVSEGSMFFAWKGQKTDGHCYIGEAIEKRARAIVCSE 79
>gi|410658126|ref|YP_006910497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dehalobacter sp. DCA]
gi|410661116|ref|YP_006913487.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dehalobacter sp. CF]
gi|409020481|gb|AFV02512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dehalobacter sp. DCA]
gi|409023472|gb|AFV05502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dehalobacter sp. CF]
Length = 492
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+LAE++D K V V GD + I GI HDSR VS G+L+VC G + DGH + +EA R
Sbjct: 7 TLAEIIDGMK--QVEVLGDTQTVINGITHDSRTVSPGNLYVCIRGYQADGHAF-AEAAVR 63
Query: 301 GAVAVVASKE 310
+ +A +E
Sbjct: 64 ASATALAVEE 73
>gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
27755]
gi|166027078|gb|EDR45835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Dorea formicigenerans ATCC 27755]
Length = 488
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L +LL+ + KVV G +EIT + +DSR V G +FVC G +DGH Y+ +
Sbjct: 1 MKLTKLLERLDYKVVA----GSDNIEITELVNDSRKVVPGSVFVCISGAVSDGHQYVKDV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+RGA AV+ K++++ E L ++ VE+T L + G
Sbjct: 57 AERGAAAVIVEKDVEVPEGL---TVIKVENTRYALALMSAAYFG 97
>gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella oris F0302]
gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella oris F0302]
Length = 483
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + P+ + G+ +VEITG+ DSR + AG LFV G + DGH ++ +A +
Sbjct: 1 MKLNELL--KNITPIKIIGNDDVEITGVNIDSRRIKAGHLFVAMKGTQVDGHQFIGKAIE 58
Query: 300 RGAVAVVA 307
GA++V+
Sbjct: 59 LGAISVLC 66
>gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
ethanolicus CCSD1]
gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
ethanolicus CCSD1]
Length = 483
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L+D K V + GD ++I+G+ +DSR LF+ G KTDG Y+ EA K GAV
Sbjct: 2 KLIDILKGVKCEIKGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAV 61
Query: 304 AVVASKEI 311
AVVA +EI
Sbjct: 62 AVVADREI 69
>gi|423329712|ref|ZP_17307518.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 3837]
gi|404602949|gb|EKB02630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 3837]
Length = 485
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L ELL ++K++ V+ GDLE+ I I DSR VS LFV G DGH Y+++A K G
Sbjct: 4 LNELLYKAKMISVT-GGDLELSIAKIAFDSREVSKETLFVAIPGTVVDGHDYITQAIKDG 62
Query: 302 AVAVVASKE-IDIEETLGCKALVIVEDTNLVLP 333
A AV+ K +DI + + ++VED+N L
Sbjct: 63 ASAVICEKLPVDIAQGV---TYILVEDSNKALA 92
>gi|423092702|ref|ZP_17080506.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
70-100-2010]
gi|357553572|gb|EHJ35319.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Clostridium difficile
70-100-2010]
Length = 484
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
++V G+L ++I +Q+DSR V+ G LF+C G +DGH Y+ +A ++GA A + +++ I
Sbjct: 13 INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEEDVAI 72
Query: 314 EETLGCKALVIVEDT 328
+ GC + V+DT
Sbjct: 73 K---GC-TFIKVKDT 83
>gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella ruminicola 23]
gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella ruminicola 23]
Length = 483
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL +V+ + GD++VEITG+ DSR + AG LFV G TDGH ++ +A +
Sbjct: 1 MKLNELLKNVEVL--NTQGDVDVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFIPKAIE 58
Query: 300 RGAVAVVASK 309
GA AV+ K
Sbjct: 59 LGATAVLCEK 68
>gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermoanaerobacter sp. X514]
gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X561]
gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X513]
gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X514]
gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X561]
gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
X513]
gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 483
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L+D K V + GD ++I+G+ +DSR LF+ G KTDG Y+ EA K GAV
Sbjct: 2 KLIDILKGVKCEIKGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAV 61
Query: 304 AVVASKEI 311
AVVA +EI
Sbjct: 62 AVVADREI 69
>gi|423135994|ref|ZP_17123639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CIP 101113]
gi|371639199|gb|EHO04817.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CIP 101113]
Length = 485
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L ELL ++K++ V+ GDLE+ I I DSR VS LFV G DGH Y+++A K G
Sbjct: 4 LNELLYKAKMISVT-GGDLELSIAKIAFDSREVSKETLFVAIPGTVVDGHDYITQAIKDG 62
Query: 302 AVAVVASK-EIDIEETLGCKALVIVEDTNLVLP 333
A AV+ K +DI + + ++VED+N L
Sbjct: 63 ASAVICEKLPVDIAQGV---TYILVEDSNKALA 92
>gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
RKU-10]
gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
RKU-10]
Length = 490
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+++ ++ K + + V ++EITG+ + S V GDLF+C G K D H + E +
Sbjct: 1 MNISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIE 60
Query: 300 RGAVAVVASKEIDIE 314
+GAVAVV KEID++
Sbjct: 61 KGAVAVVVEKEIDLD 75
>gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
29176]
gi|197298532|gb|EDY33076.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Ruminococcus lactaris ATCC 29176]
Length = 496
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L LL+ E KVV G E E+T + +DSR V G +FVC G +DGH Y +E
Sbjct: 1 MRLDTLLERLEYKVVQ----GSAETEVTTLINDSRKVENGSVFVCISGAVSDGHKYAAEV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
++GA AVV K++++ + ++ VEDT L + G
Sbjct: 57 AEKGAAAVVVEKDVEVPADV---TVIKVEDTRYALALMSAAYFG 97
>gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sulfurreducens PCA]
gi|81701142|sp|Q748D2.1|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sulfurreducens PCA]
Length = 509
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 245 LLDESKVV-PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
L D ++VV P++V GDL EI G+ DSR V +G LF G +DGH +++ A +RGAV
Sbjct: 3 LEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAV 62
Query: 304 AVVASKEIDIEETLGCKA-LVIVEDTNLVLPHWLPLFIG 341
AVV ++ E C + V D L + LF G
Sbjct: 63 AVV----LEDETRAPCGMEWIRVGDARLAMSRMAALFYG 97
>gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella parvula ATCC 17745]
gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Veillonella parvula ATCC 17745]
Length = 494
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V G+ VEI + DSR V G LF+ G DGH Y+++A + GAVAV+ SK I+I
Sbjct: 16 VEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAVAVLVSKPIEISS 75
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
+ ++ VEDT + +P F
Sbjct: 76 DV---CVITVEDTRAAMMACVPYF 96
>gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Oceanobacillus iheyensis HTE831]
gi|30316003|sp|Q8CZE4.1|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName:
Full=UDP-MurNAc-tripeptide synthetase 2
gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
(EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
Length = 492
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G L I+ I H+SR V LF+C G DGH +++EA + GA +VA +E++++
Sbjct: 17 GKLPNTISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREVNLDTNK 76
Query: 318 GCKALVIVEDTN 329
L+IV DTN
Sbjct: 77 A--TLIIVPDTN 86
>gi|373110994|ref|ZP_09525255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 10230]
gi|371641475|gb|EHO07059.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 10230]
Length = 485
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L ELL ++K++ V+ GDLE+ I I DSR VS LFV G DGH Y+++A K G
Sbjct: 4 LNELLYKAKMISVT-GGDLELSIAKIAFDSREVSKETLFVAIPGTVVDGHDYITQAIKDG 62
Query: 302 AVAVVASKE-IDIEETLGCKALVIVEDTNLVLP 333
A AV+ K +DI + + ++VED+N L
Sbjct: 63 ASAVICEKLPVDIAQGV---TYILVEDSNKALA 92
>gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella denticola F0289]
gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella denticola F0289]
Length = 484
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL + P++++G+ +VEI G+ DSR + G LF+ G + DGH ++ +A +
Sbjct: 1 MKLSELL--RNISPIAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVE 58
Query: 300 RGAVAVV 306
+GA AV+
Sbjct: 59 QGAAAVL 65
>gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
Length = 490
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+++ ++ K + + V ++EITG+ + S V GDLF+C G K D H + E +
Sbjct: 1 MNISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVME 60
Query: 300 RGAVAVVASKEIDIE 314
+GAVAVV KEID++
Sbjct: 61 KGAVAVVVEKEIDLD 75
>gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila
RKU-1]
gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermotoga petrophila RKU-1]
Length = 490
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+++ ++ K + + V ++EITG+ + S V GDLF+C G K D H + E +
Sbjct: 1 MNISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVME 60
Query: 300 RGAVAVVASKEIDIE 314
+GAVAVV KEID++
Sbjct: 61 KGAVAVVVEKEIDLD 75
>gi|386716260|ref|YP_006182584.1| UDP-N-acetylmuramyl tripeptide synthetase [Halobacillus halophilus
DSM 2266]
gi|384075817|emb|CCG47313.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halobacillus halophilus
DSM 2266]
Length = 515
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L ELL +V+ + + E++I G+ ++SR V GD+FVC G KTDGH Y+ EA G
Sbjct: 4 LYELLKSIQVL--DAWNEQELDIHGLAYNSRKVKQGDIFVCIKGFKTDGHAYILEAISNG 61
Query: 302 AVAVV 306
A A+V
Sbjct: 62 ATAIV 66
>gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar konkukian str. 97-27]
Length = 493
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSE 296
M L EL S ++ GD+ +EITG++ DSR +++G+LF+C G D H ++ +
Sbjct: 1 MKLKEL--TSLLLIKDTVGDMNIEITGLEMDSRKITSGNLFICVSGINGFLEDRHQFVED 58
Query: 297 ADKRGAVAVVASKEIDIE 314
A K GAVA++ ++++IE
Sbjct: 59 AVKNGAVALIVERDVNIE 76
>gi|390453130|ref|ZP_10238658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus peoriae KCTC 3763]
Length = 495
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA LL S++V GD V+ GI DSR V GDLF+C G DGH Y +A G
Sbjct: 6 LASLLAASRIV-----GDGTVDCRGIGADSRRVEQGDLFLCLPGFTVDGHDYAGQAIASG 60
Query: 302 AVAVVASKEIDI 313
A A+V +E+D+
Sbjct: 61 AAALVVERELDV 72
>gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Erysipelothrix rhusiopathiae ATCC 19414]
Length = 440
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 252 VPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
V SV G +V+ G++ DSR V AGDLFVC G + DGH Y+ + +GAVAV+ +I
Sbjct: 13 VKGSVLGSTQVQ--GVKVDSRAVEAGDLFVCLKGARVDGHDYIEDVIGKGAVAVLVDHKI 70
Query: 312 DIEETLGCKALVIVEDTNLVL 332
D + C+ +IV+DT L
Sbjct: 71 DNLDV--CQ--IIVDDTMAAL 87
>gi|336065895|ref|YP_004560753.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Erysipelothrix rhusiopathiae str. Fujisawa]
gi|334295841|dbj|BAK31712.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 440
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 252 VPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
V SV G +V+ G++ DSR V AGDLFVC G + DGH Y+ + +GAVAV+ +I
Sbjct: 13 VKGSVLGSTQVQ--GVKVDSRAVEAGDLFVCLKGARVDGHDYIEDVIGKGAVAVLVDHKI 70
Query: 312 DIEETLGCKALVIVEDTNLVL 332
D + C+ +IV+DT L
Sbjct: 71 DNLDV--CQ--IIVDDTMAAL 87
>gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-66c26]
gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile CIP 107932]
gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-76w55]
gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-97b34]
gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-37x79]
gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile CD196]
gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile R20291]
gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile QCD-32g58]
gi|384361881|ref|YP_006199733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium difficile BI1]
gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
te ligase [Clostridium difficile CD196]
gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
te ligase [Clostridium difficile R20291]
Length = 484
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
++V G+L ++I +Q++SR V+ G LF+C G +DGH Y+ +A ++GA A + ++++I
Sbjct: 13 INVKGELNIDINNVQYNSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFLVEEDVEI 72
Query: 314 EETLGCKALVIVEDT 328
+ GC + V+DT
Sbjct: 73 K---GC-TFIKVKDT 83
>gi|398813803|ref|ZP_10572494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevibacillus sp. BC25]
gi|398037856|gb|EJL31033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevibacillus sp. BC25]
Length = 472
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
+EITG+ DSR V G LFVC G DGH + ++A K GAVAV++ +++D+ T+
Sbjct: 1 MEITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKDGAVAVLSEQDLDVPATI 56
>gi|373460715|ref|ZP_09552466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella maculosa OT 289]
gi|371955333|gb|EHO73137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella maculosa OT 289]
Length = 482
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + P+ + GD EVEITG+ DSR + AG LF+ G + DGH ++++A +
Sbjct: 1 MKLNEVL--KNIHPIKIVGDAEVEITGVNIDSRRIKAGHLFIAMKGTQVDGHQFIAKAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
G +++ D+ E +G V V T LF G
Sbjct: 59 LGGKSILCE---DLPEPVGGVTYVQVASTEDAAGKVATLFYG 97
>gi|409913521|ref|YP_006891986.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sulfurreducens KN400]
gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sulfurreducens KN400]
Length = 509
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 245 LLDESKVV-PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
L D ++VV P++V GDL EI G+ DSR V +G LF G +DGH +++ A +RGAV
Sbjct: 3 LEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAV 62
Query: 304 AVVASKEIDIEETLGCKA-LVIVEDTNLVLPHWLPLFIG 341
AVV ++ E C + V D L + LF G
Sbjct: 63 AVV----LEDETRAPCGMEWIRVGDARLAMSRMAALFYG 97
>gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl tripeptide synthetase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 534
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
++ V V+G L+ EI+G+ +DSR G LF C G K DGH YL + +G AVVA
Sbjct: 41 LLKVKVFGKLDGEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLEDVLSKGVSAVVA 97
>gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus polymyxa E681]
gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus polymyxa E681]
Length = 495
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA LL S+VV GD V+ GI DSR V GDLF+C G DGH Y +A G
Sbjct: 6 LASLLAVSRVV-----GDGTVDCRGIGADSRRVQQGDLFLCLPGFTVDGHDYAEQAIASG 60
Query: 302 AVAVVASKEIDI 313
A A+V +E+D+
Sbjct: 61 AAALVVERELDV 72
>gi|345883071|ref|ZP_08834520.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella sp. C561]
gi|345044109|gb|EGW48156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Prevotella sp. C561]
Length = 485
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL + V P++ GD+++EI G+ DSR + G LF+ G + DGH ++S+A +
Sbjct: 1 MKLSKLL--TNVKPIACKGDVDIEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIE 58
Query: 300 RGAVAVV 306
GAVA++
Sbjct: 59 LGAVAIL 65
>gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
lipocalidus DSM 12680]
gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
lipocalidus DSM 12680]
Length = 493
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L L+ +V+ S GDL+ EI G+Q+DSR + G LFVC G K DGH Y+ A G
Sbjct: 4 LENLISGLEVIETS--GDLDKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGAG 61
Query: 302 AVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
A+A++ K + + + +V V+DT LP F G
Sbjct: 62 AIALLVEKPVAGTQGV---TVVRVKDTRKALPIVASNFYG 98
>gi|295094720|emb|CBK83811.1| UDP-N-acetylmuramyl pentapeptide synthase [Coprococcus sp. ART55/1]
Length = 87
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 249 SKVVPVSVY----GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVA 304
S V+ +VY GD++ +IT + DSR V+ G LFVC G +TDGH Y+ +A RGA
Sbjct: 4 SDVLKGTVYEILAGDIDCQITDLADDSRDVTQGTLFVCRRGARTDGHRYIDDAVARGAAC 63
Query: 305 VVASKEIDI 313
+V + +I I
Sbjct: 64 IVVTDDIGI 72
>gi|451819444|ref|YP_007455645.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785423|gb|AGF56391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase MurE [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 487
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+ G+++VEI I +DSR ++ D+FVC G TDGH Y+++A + GA +V ++DIE
Sbjct: 15 IQGEIDVEINKINYDSRKINQLDVFVCVKGYATDGHNYINKALENGAKVIVVQDKVDIE 73
>gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Turicibacter sanguinis PC909]
gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Turicibacter sp. HGF1]
gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Turicibacter sanguinis PC909]
gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Turicibacter sp. HGF1]
Length = 481
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
E+TGI D+R V GDLFVC G DGH + A++ GAVA+V E+ E +
Sbjct: 14 EVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCEYEL---ENIAIPQ- 69
Query: 323 VIVEDTNLVLPHWLPLF 339
+IV+DT + LP L
Sbjct: 70 IIVKDTAVELPRLAHLM 86
>gi|440781903|ref|ZP_20960131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium pasteurianum DSM 525]
gi|440220621|gb|ELP59828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium pasteurianum DSM 525]
Length = 482
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V G + + I I++DSR V+ DLF+C G TDGH Y+ A K GA A+V +K I +
Sbjct: 15 VKGHINLNINKIEYDSRNVTKDDLFICIEGFSTDGHKYIGNAVKSGATAIVCTK---IPK 71
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
L ++ VED+ VL F G
Sbjct: 72 DLPNCTVIHVEDSRKVLALTAANFYG 97
>gi|374296732|ref|YP_005046923.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium clariflavum
DSM 19732]
gi|359826226|gb|AEV68999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium clariflavum
DSM 19732]
Length = 484
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L+ +++ V+ GDL++EI I +DSR G LFVC G K DGH ++ +A +
Sbjct: 1 MKLKDLIKNLEILDVT--GDLDLEIDSIAYDSRKTKNGSLFVCIEGFKADGHKFIPQAVE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
G A++ +E++ E + +V V+DT L +F
Sbjct: 59 NGTKALLVQREVEAPEGI---TVVRVKDTRYALASVADVF 95
>gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl tripeptide synthetase [Thermincola potens JR]
gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR]
Length = 495
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
V GDL V+I G+ +DSR V G F+C G KTDGHL+ A + GA ++A K
Sbjct: 16 VQGDLTVQIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQNAVENGATVIIAEK 69
>gi|402815850|ref|ZP_10865442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus alvei DSM 29]
gi|402506890|gb|EJW17413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus alvei DSM 29]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
+M LAE S+++ G+ +TG+ DSR V GDLF C G DGH Y +A
Sbjct: 3 QMQLAEAC--SRMLTAKCKGNEHTVVTGLAMDSRDVKQGDLFFCISGTAEDGHRYAEQAV 60
Query: 299 KRGAVAVVASKEIDIE 314
+ GA A+V +E+D++
Sbjct: 61 QAGAAALVVERELDLQ 76
>gi|373857220|ref|ZP_09599962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus sp. 1NLA3E]
gi|372452870|gb|EHP26339.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus sp. 1NLA3E]
Length = 497
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
KM+L LL + + PV +VEIT I++D+R V G LF+C G DGH + + A
Sbjct: 7 KMNLHTLL--ASLHPVGSVPFADVEITSIENDNRKVQQGSLFICVKGYTVDGHDFAAAAV 64
Query: 299 KRGAVAVVASKEIDIE 314
+ GAVAV+A + +++E
Sbjct: 65 ENGAVAVLAERNLELE 80
>gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 494
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL K + G+ E +I + HDSR V LFVC G TDG LY+ EA +
Sbjct: 1 MKLTNLLRPIKYSILQ--GESEPDIEKVTHDSREVERDTLFVCIKGSATDGALYVGEAVE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GAVA++A + I++ + ++VE+ L +F G
Sbjct: 59 KGAVAILADRRIEVPREV---TFILVENVRETLAKIASVFYG 97
>gi|346306734|ref|ZP_08848888.1| hypothetical protein HMPREF9457_00597 [Dorea formicigenerans
4_6_53AFAA]
gi|345908092|gb|EGX77760.1| hypothetical protein HMPREF9457_00597 [Dorea formicigenerans
4_6_53AFAA]
Length = 488
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L +LL+ + KVV G +EIT + +DSR V G FVC G +DGH Y+ +
Sbjct: 1 MKLTKLLERLDYKVVA----GSDNIEITELVNDSRKVVPGSAFVCISGAVSDGHQYVKDV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+RGA AV+ K++++ E L ++ VE+T L + G
Sbjct: 57 AERGAAAVIVEKDVEVPEGL---TVIKVENTRYALALMSAAYFG 97
>gi|392960450|ref|ZP_10325918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans DSM 17108]
gi|421054794|ref|ZP_15517759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelosinus fermentans B4]
gi|421058874|ref|ZP_15521519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans B3]
gi|421066757|ref|ZP_15528317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans A12]
gi|421071656|ref|ZP_15532772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans A11]
gi|392440475|gb|EIW18155.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelosinus fermentans B4]
gi|392446921|gb|EIW24192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans A11]
gi|392453226|gb|EIW30113.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans A12]
gi|392455027|gb|EIW31834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans DSM 17108]
gi|392459916|gb|EIW36276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans B3]
Length = 500
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
E I + DSR ++ G LFVC G KTDGH Y+ +A +GAVAV+ K+IDI
Sbjct: 25 ETVIADLAQDSRKITPGTLFVCLSGAKTDGHDYIVQACHQGAVAVLVEKDIDI 77
>gi|421074500|ref|ZP_15535531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans JBW45]
gi|392527371|gb|EIW50466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Pelosinus fermentans JBW45]
Length = 500
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
E I + DSR ++ G LFVC G KTDGH Y+ +A +GAVAV+ K+IDI
Sbjct: 25 ETVIADLAQDSRKITPGTLFVCLSGAKTDGHDYIVQAYHQGAVAVLVEKDIDI 77
>gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Veillonella sp. 6_1_27]
gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Veillonella sp. 6_1_27]
Length = 496
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 240 MSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M + L D K + V G+ VEI + DSR V G LF+ G DGH Y+++A
Sbjct: 1 MYMKHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAV 60
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+ GAVAV+ SK ++I + ++ VEDT + +P F
Sbjct: 61 EAGAVAVLVSKPVEISSDV---CVITVEDTRAAMMACVPYF 98
>gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus MM3]
gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus MM3]
Length = 500
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ VEITG++ DSR +++G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 24 GDMNVEITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 83
>gi|389797165|ref|ZP_10200208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 116-2]
gi|388447539|gb|EIM03539.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 116-2]
Length = 460
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+VE+TG+ D+R + GDLFV G + DGH YL+EA RGAVA + ++++D
Sbjct: 19 DVEVTGVAIDTRRLEPGDLFVAIKGERADGHDYLAEAATRGAVAALVTRKVD 70
>gi|352090513|ref|ZP_08954562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 2APBS1]
gi|351676886|gb|EHA60038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodanobacter sp. 2APBS1]
Length = 460
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+VE+TG+ D+R + GDLFV G + DGH YL+EA RGAVA + ++++D
Sbjct: 19 DVEVTGVAIDTRRLEPGDLFVAIKGERADGHDYLAEAATRGAVAALVTRKVD 70
>gi|365840194|ref|ZP_09381395.1| Mur ligase family, catalytic domain protein [Anaeroglobus geminatus
F0357]
gi|364562249|gb|EHM40117.1| Mur ligase family, catalytic domain protein [Anaeroglobus geminatus
F0357]
Length = 89
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
++ EL E K V ++ G+ VEITGI DSR + GDLFVC G DG ++ +A ++
Sbjct: 3 TVRELCREIKGV-YNIEGNDGVEITGISADSREIERGDLFVCIAGAHVDGAVFAGQAAEK 61
Query: 301 GAVAVVAS 308
GAVAV+ +
Sbjct: 62 GAVAVLTT 69
>gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermotoga maritima MSB8]
gi|403252958|ref|ZP_10919263.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. EMP]
gi|418046173|ref|ZP_12684267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga maritima
MSB8]
gi|8134581|sp|Q9WY79.1|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase; AltName: Full=D-lysine-adding enzyme; AltName:
Full=L-lysine-adding enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName:
Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermotoga maritima MSB8]
gi|351675726|gb|EHA58886.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga maritima
MSB8]
gi|402811720|gb|EJX26204.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. EMP]
Length = 490
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+++ ++ K + + V ++EITG+ + S V GDLF+C G K D H + E +
Sbjct: 1 MNISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVME 60
Query: 300 RGAVAVVASKEIDIE 314
+GAVAVV +EID++
Sbjct: 61 KGAVAVVVEREIDLD 75
>gi|338814771|ref|ZP_08626757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetonema longum DSM
6540]
gi|337273330|gb|EGO61981.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetonema longum DSM
6540]
Length = 498
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+L LL + V+ G+L I + +DSR A LFVC G K DGH Y+++A ++
Sbjct: 8 ALVTLLPNANVIS----GELAHRIEHLVYDSRAAQANTLFVCLAGAKVDGHDYVAKAHEQ 63
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GAVA + K++ + + ++ V DT L + P F
Sbjct: 64 GAVAALVEKDVAAPDGM---TIIKVPDTRLAMQSIAPYF 99
>gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
papyrosolvens DSM 2782]
gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
papyrosolvens DSM 2782]
Length = 487
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL+ + + ++ G LEVE+ I +DSR G LFVC G DGH Y+++A +
Sbjct: 1 MQLKELVKDLNIKEIN--GSLEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYINDAIE 58
Query: 300 RGAVAVVASKEIDIEETL 317
G A + K +D+ E +
Sbjct: 59 NGTKAFLVQKHVDVPEGI 76
>gi|345022592|ref|ZP_08786205.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ornithinibacillus
scapharcae TW25]
Length = 497
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL+ ++V + ++ +E I + S+ V+ GDLFVC G KTDGH YL +A+
Sbjct: 1 MQLRELLNAIELVNKTEVEEIAIE--KISYHSQQVTQGDLFVCIKGYKTDGHKYLKDAES 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
RGA A V +I+E + V V D+ + L F G
Sbjct: 59 RGAAAAVVE---EIQEGIDIPQYV-VTDSRIALAKLGAKFYG 96
>gi|398310618|ref|ZP_10514092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus mojavensis RO-H-1]
Length = 132
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL----- 317
EIT I+ DSR V G LFVC G DGH + +A + GA A+VA KE+D++ +
Sbjct: 23 EITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEKELDVDVPVIIVRQ 82
Query: 318 GCKALVIVEDTNLVLPHWLPLFIGI-------RRRIW 347
+AL ++ D P IGI +R IW
Sbjct: 83 SLRALSVLSDAFYGQPTKKLQLIGITGTNGKHQRPIW 119
>gi|381209805|ref|ZP_09916876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lentibacillus sp. Grbi]
Length = 489
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL S D +EI+G++ DSR V+ G+LF+C G DGH ++ +A
Sbjct: 1 MRLSELLTVLPFYNTSAALD-NLEISGVETDSRKVAEGNLFICIQGFTVDGHDFIDQAAN 59
Query: 300 RGAVAVVASKEID 312
GA AV+A KE++
Sbjct: 60 NGAHAVLAEKEVN 72
>gi|384211803|ref|YP_005600885.1| UDP-N-acetylmuramyl tripeptide synthetase [Brucella melitensis
M5-90]
gi|384408913|ref|YP_005597534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis M28]
gi|384445476|ref|YP_005604195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Brucella melitensis NI]
gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis M28]
gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis
M5-90]
gi|349743465|gb|AEQ09008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Brucella melitensis NI]
Length = 490
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDTAIADA 76
>gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella melitensis bv. 1 str. Rev.1]
gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella melitensis bv. 3 str. Ether]
gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella melitensis bv. 3 str. Ether]
gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella melitensis bv. 1 str. Rev.1]
Length = 490
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDTAIADA 76
>gi|30316384|sp|Q8YI71.2|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
Length = 488
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDTAIADA 74
>gi|433651152|ref|YP_007277531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella dentalis DSM
3688]
gi|433301685|gb|AGB27501.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella dentalis DSM
3688]
Length = 485
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M + ELL + P+++ G+ +VEITG+ DSR V G LFV G + DGHL++ +A +
Sbjct: 1 MKIQELL--KNIRPLAMAGETDVEITGVDIDSRQVKDGHLFVAMKGTQVDGHLFIPKAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GA AV+ +++ E+ LG V VE T LF G
Sbjct: 59 LGAKAVLC-EDMPTEKALGV-TYVQVESTEDAAGKVATLFYG 98
>gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis ATCC 23457]
gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC
23457]
Length = 488
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDTAIADA 74
>gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
Length = 493
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L +LL+ E KVV G+ ++EIT + +DSR V AG +FVC G DGH ++ E
Sbjct: 2 MKLTKLLERLEYKVVQ----GNDDIEITELTNDSRRVCAGSVFVCISGAVVDGHEFVKEV 57
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDT 328
++GA AV+ KE+ E + ++ VEDT
Sbjct: 58 LEKGAKAVIVEKEVKAPEHV---TVIKVEDT 85
>gi|347532498|ref|YP_004839261.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseburia hominis
A2-183]
gi|345502646|gb|AEN97329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseburia hominis
A2-183]
Length = 503
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+EL E K +S G ++V++ + +DSR ++ G +FVC VG TDGH Y+ +A K
Sbjct: 1 MKLSELCSEFKYECLS--GSMDVDVRDVIYDSRKITEGTVFVCMVGAVTDGHKYIPDAVK 58
Query: 300 RGAVAVVASK 309
+GA A+V +
Sbjct: 59 KGASAIVVER 68
>gi|423459356|ref|ZP_17436153.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus
BAG5X2-1]
gi|401144434|gb|EJQ51964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus
BAG5X2-1]
Length = 493
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSE 296
M L EL D + + GD+ VEITG++ DSR +++G+LF+C G D H ++ +
Sbjct: 1 MKLKELADLLLIKDTN--GDMNVEITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVED 58
Query: 297 ADKRGAVAVVASKEIDIE 314
A + GAVA++ ++I+IE
Sbjct: 59 AVENGAVALIVERDINIE 76
>gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella ceti M13/05/1]
gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella ceti M644/93/1]
gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella ceti M13/05/1]
gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella ceti M644/93/1]
Length = 490
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA+VA K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDTAIADA 76
>gi|374324852|ref|YP_005077981.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus terrae HPL-003]
gi|357203861|gb|AET61758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus terrae HPL-003]
Length = 495
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA LL S++V GD V+ GI DSR V GDLF+C G DGH Y +A G
Sbjct: 6 LASLLAASRIV-----GDGTVDCRGIGADSRRVQQGDLFLCLPGFTVDGHDYAQQAVASG 60
Query: 302 AVAVVASKEIDI 313
A A+V +E+++
Sbjct: 61 AAALVVERELNV 72
>gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella ceti B1/94]
gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella pinnipedialis M163/99/10]
gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella pinnipedialis B2/94]
gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella pinnipedialis M292/94/1]
gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella ceti M490/95/1]
gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella ceti B1/94]
gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella pinnipedialis B2/94]
gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella pinnipedialis M163/99/10]
gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella ceti M490/95/1]
gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella pinnipedialis M292/94/1]
Length = 490
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA+VA K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDTAIADA 76
>gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus pseudofirmus OF4]
gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus pseudofirmus OF4]
Length = 487
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
EIT I+ DSR V +G LF C G DGH + +A ++GAVA++A +E+ E
Sbjct: 23 EITHIEMDSREVVSGTLFFCIKGYTVDGHDFAKQAVEKGAVALIAEREVKGVEV----PT 78
Query: 323 VIVEDTNLVLPHWLPLFIG 341
+IV+DT + LF G
Sbjct: 79 IIVQDTKRTMARLANLFYG 97
>gi|340791044|ref|YP_004756509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella pinnipedialis B2/94]
gi|340559503|gb|AEK54741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella pinnipedialis B2/94]
Length = 488
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA+VA K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIVAGKDTAIADA 74
>gi|423402776|ref|ZP_17379949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus
BAG2X1-2]
gi|401650368|gb|EJS67940.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus
BAG2X1-2]
Length = 240
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ VEITG++ DSR +++G+LF+C G D H ++ A K GAVA++ ++I IE
Sbjct: 17 GDMNVEITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVENAVKNGAVALIVERDITIE 76
>gi|375309402|ref|ZP_09774683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus sp. Aloe-11]
gi|375078711|gb|EHS56938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Paenibacillus sp. Aloe-11]
Length = 506
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA LL S++V GD V+ GI DSR V GDLF+C G DGH Y +A G
Sbjct: 17 LASLLAVSRIV-----GDGTVDCRGIGADSRRVKQGDLFLCLPGFTVDGHDYAVQAIASG 71
Query: 302 AVAVVASKEIDI 313
A A+V +E+D+
Sbjct: 72 AAALVVERELDV 83
>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
olearia TBF 19.5.1]
gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
olearia TBF 19.5.1]
Length = 468
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+SL+++++ + +S G +VEI GI D+R + GDLFV G + DGH ++ EA K
Sbjct: 4 ISLSKIIEATGGTLLS--GTPDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDEAFK 61
Query: 300 RGAVAVVASKEID 312
+GA+ + S+E++
Sbjct: 62 KGAIGAIVSREVE 74
>gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella melaninogenica D18]
gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella melaninogenica D18]
Length = 485
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL KV+ G+++VEI G+ DSR + G LF+ G + DGH ++S+A +
Sbjct: 1 MKLSELLKNVKVIASQ--GNIDVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFISKAIE 58
Query: 300 RGAVAVV 306
GAVA++
Sbjct: 59 LGAVAIL 65
>gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase [Prevotella melaninogenica ATCC 25845]
gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase [Prevotella melaninogenica ATCC 25845]
Length = 485
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ELL KV+ G+++VEI G+ DSR + G LF+ G + DGH ++S+A +
Sbjct: 1 MKLSELLKNVKVIASQ--GNIDVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIE 58
Query: 300 RGAVAVV 306
GAVA++
Sbjct: 59 LGAVAIL 65
>gi|310642992|ref|YP_003947750.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus polymyxa
SC2]
gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
SC2]
gi|392303806|emb|CCI70169.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Paenibacillus polymyxa M1]
Length = 495
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA LL S+V+ GD V+ GI DSR V GDLF+C G DGH Y +A G
Sbjct: 6 LASLLAVSRVM-----GDGTVDCRGIGADSRRVQPGDLFLCLPGFTVDGHDYAGQAVASG 60
Query: 302 AVAVVASKEIDI 313
A A+V +E+D+
Sbjct: 61 AAALVVERELDV 72
>gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella oris C735]
gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella oris C735]
Length = 483
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + P+ + G+ +VEITG+ DSR + G LFV G + DGH ++ +A +
Sbjct: 1 MKLNELL--KNITPIKIIGNDDVEITGVNIDSRRIKTGHLFVAMKGTQVDGHQFIGKAIE 58
Query: 300 RGAVAVVA 307
GA++V+
Sbjct: 59 LGAISVLC 66
>gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
472 str. F0295]
gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
472 str. F0295]
Length = 481
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L+ +L K P+SV G+ EVEITG+ DSR V LFV G + DGH ++ +A
Sbjct: 1 MTLSSILKNVK--PLSVVGNAEVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFIDKAVA 58
Query: 300 RGAVAVVA 307
+GA AV+
Sbjct: 59 QGATAVLC 66
>gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermomicrobium roseum DSM 5159]
gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermomicrobium roseum DSM 5159]
Length = 505
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
GD + +T + +DSR + G LFV G TDGH YL++A RGAVA V +E ++
Sbjct: 17 GDDAIMVTRVVYDSRQATPGSLFVALRGTHTDGHCYLADAASRGAVAAVV-EEWPSQDVP 75
Query: 318 GCKALVIVEDTNLVLPHWLPLFIG 341
G + + V DT + L F G
Sbjct: 76 GLRTIARVSDTRVALAAIAARFYG 99
>gi|410724134|ref|ZP_11363333.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
Maddingley MBC34-26]
gi|410602420|gb|EKQ56900.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
Maddingley MBC34-26]
Length = 486
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M+L +LD KVV GD++VEI I +DSR V D+F+C G TDGH Y+ +A
Sbjct: 1 MNLKSILDGINYKVVK----GDIDVEINKISYDSRKVEELDVFICIKGYATDGHRYIDKA 56
Query: 298 DKRGAVAVVASKEIDIE 314
++GA ++ +++I+
Sbjct: 57 IEKGAKVIIIQDDVEIK 73
>gi|398354336|ref|YP_006399800.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sinorhizobium fredii USDA 257]
gi|390129662|gb|AFL53043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sinorhizobium fredii USDA 257]
Length = 486
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
D E++I GI DSR V GDLFV G K +G Y+++A RGA AV+A+K
Sbjct: 22 DAEIDIAGITADSRQVKPGDLFVAVAGTKANGAAYIADALSRGAAAVIAAK 72
>gi|372486937|ref|YP_005026502.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechlorosoma suillum PS]
gi|359353490|gb|AEV24661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechlorosoma suillum PS]
Length = 469
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
+ +L + ++ + YG V G+ DSR V G+LFV G + DGH YL++A +RG
Sbjct: 1 MMDLFEVARATNGTAYGS-NVLFGGVSTDSRSVGRGELFVALRGERFDGHEYLAQAGERG 59
Query: 302 AVAVVASKEIDIEETLGCKA---LVIVEDTNLVL----PHW-----LPLF 339
A A V + +D E L K LV V DT L L +W LPL
Sbjct: 60 ACAAVVA--VDTVEQLQGKVSLPLVAVADTRLALGALAGYWRAKFSLPLI 107
>gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella suis bv. 3 str. 686]
gi|376275951|ref|YP_005116390.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella canis HSK A52141]
gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella suis bv. 3 str. 686]
gi|363404518|gb|AEW14813.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella canis HSK A52141]
Length = 490
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 76
>gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella sp. 83/13]
gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella sp. 83/13]
Length = 490
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 76
>gi|354558753|ref|ZP_08978007.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfitobacterium metallireducens DSM 15288]
gi|353545815|gb|EHC15265.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfitobacterium metallireducens DSM 15288]
Length = 490
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA++LD KV+ S GD+EV I G+ DSR V G+L+ C G DGH + ++ ++G
Sbjct: 5 LADILDGIKVLASS--GDMEVGIKGMTMDSRHVETGELYACVPGANVDGHDFATQVVEKG 62
Query: 302 AVAVVASKEIDIE 314
AVA++ + + I+
Sbjct: 63 AVALLVERLLPID 75
>gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella suis bv. 5 str. 513]
gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella suis bv. 5 str. 513]
Length = 490
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAI 73
>gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella neotomae 5K33]
gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella neotomae 5K33]
gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
Length = 490
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 76
>gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
Length = 490
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 76
>gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermoanaerobacter tengcongensis MB4]
gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
tengcongensis MB4]
Length = 492
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
+ L+D K V + G+ V+I+G+ +DSR LF+ G KTDG LY+ EA K G
Sbjct: 10 IMRLVDLLKGVKHEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNG 69
Query: 302 AVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
AVAVV + DI E G +V+VED +
Sbjct: 70 AVAVVTDR--DISEYPGV-TVVLVEDARAAM 97
>gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella suis 1330]
gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella canis ATCC 23365]
gi|376281099|ref|YP_005155105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Brucella suis VBI22]
gi|384225093|ref|YP_005616257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Brucella suis 1330]
gi|30316051|sp|Q8FZP0.1|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella suis 1330]
gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC
23365]
gi|343383273|gb|AEM18765.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Brucella suis 1330]
gi|358258698|gb|AEU06433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Brucella suis VBI22]
Length = 488
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 74
>gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 9 str. C68]
gi|376272830|ref|YP_005151408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus A13334]
gi|423166489|ref|ZP_17153192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI435a]
gi|423171136|ref|ZP_17157811.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI474]
gi|423172781|ref|ZP_17159452.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI486]
gi|423178525|ref|ZP_17165169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI488]
gi|423180566|ref|ZP_17167207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI010]
gi|423183698|ref|ZP_17170335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI016]
gi|423185362|ref|ZP_17171976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI021]
gi|423188497|ref|ZP_17175107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI259]
gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 9 str. C68]
gi|363400436|gb|AEW17406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus A13334]
gi|374538470|gb|EHR09978.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI474]
gi|374543973|gb|EHR15451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI435a]
gi|374544300|gb|EHR15777.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI486]
gi|374545306|gb|EHR16769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI488]
gi|374548097|gb|EHR19549.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI010]
gi|374548526|gb|EHR19974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI016]
gi|374559059|gb|EHR30448.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI259]
gi|374560072|gb|EHR31455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. NI021]
Length = 490
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 21 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 76
>gi|402833336|ref|ZP_10881955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. CM52]
gi|402280647|gb|EJU29348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. CM52]
Length = 966
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+LAEL + V + GD +I I HDSR V+ G LFV G DGH ++++A ++
Sbjct: 3 TLAEL--AALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 60
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA A++ + I+I E G A++ V + L +P F
Sbjct: 61 GACAILTERGIEIPE--GAAAVLRVPNLAAALEVIVPFF 97
>gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella suis bv. 4 str. 40]
gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Brucella suis bv. 4 str. 40]
Length = 488
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 74
>gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
Length = 488
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 74
>gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella suis ATCC 23445]
gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella microti CCM 4915]
gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC
23445]
gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella microti CCM 4915]
Length = 488
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 74
>gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella abortus bv. 1 str. 9-941]
gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis biovar Abortus 2308]
gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella abortus S19]
gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
ligase [Brucella abortus bv. 1 str. 9-941]
gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
peptidoglycan synthetases,
C-terminal:UDP-N-acetylmuramyl-tripe [Brucella
melitensis biovar Abortus 2308]
gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella abortus S19]
Length = 488
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 74
>gi|408356954|ref|YP_006845485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Amphibacillus xylanus NBRC 15112]
gi|407727725|dbj|BAM47723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Amphibacillus xylanus NBRC 15112]
Length = 491
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI GIQ +S+ V+ DLFVC G DGH ++ +A K GAVA++A KE++
Sbjct: 24 EIKGIQVNSQKVTESDLFVCISGYTVDGHDFVDQAIKNGAVAIIAEKELN 73
>gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
43184]
gi|423722749|ref|ZP_17696902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides merdae CL09T00C40]
gi|154086280|gb|EDN85325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Parabacteroides merdae ATCC 43184]
gi|409242022|gb|EKN34787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides merdae CL09T00C40]
Length = 490
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL+ +V+ V G+ +VEI+GIQ DSR V G LFV G DGH Y+ A
Sbjct: 1 MELKELIHPLEVL--EVVGNTDVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIG 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIR 343
+GA A+V C+ + + D ++ + P+FI ++
Sbjct: 59 KGAAAIV------------CEEIPALSDEDIQVSESKPVFIRVK 90
>gi|424714916|ref|YP_007015631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria monocytogenes serotype 4b str. LL195]
gi|424014100|emb|CCO64640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria monocytogenes serotype 4b str. LL195]
Length = 510
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 228 KSRARIVEPKFKMSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGR 286
+R E +M L EL+ + +PV E +EI+ I DSR V G LF+C G
Sbjct: 8 NNRKNKFEEMARMKLNELM---QAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGE 64
Query: 287 KTDGHLYLSEADKRGAVAVVASKEIDI 313
DGH + S A + GAVA++A K++D+
Sbjct: 65 LVDGHQFASRAVELGAVAIIAEKQLDV 91
>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Neptuniibacter caesariensis]
gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Oceanospirillum sp. MED92]
Length = 457
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+VE +G+ D+R ++ GDLFV VG DGH Y+ +A +GAVA V S+ +++ K
Sbjct: 21 DVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQAFSKGAVAAVVSR----SDSVSRK 76
Query: 321 ALVIVEDTNLVLP 333
A +V+DT + L
Sbjct: 77 AAWVVDDTRIALA 89
>gi|423476593|ref|ZP_17453308.1| hypothetical protein IEO_02051 [Bacillus cereus BAG6X1-1]
gi|402432900|gb|EJV64955.1| hypothetical protein IEO_02051 [Bacillus cereus BAG6X1-1]
Length = 203
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 9/80 (11%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDG-----HLYL 294
M L EL D ++ GD+ VEITG++ DSR +++G+LF+C G DG H ++
Sbjct: 1 MKLKELAD--LLLIKETIGDMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDRHQFV 56
Query: 295 SEADKRGAVAVVASKEIDIE 314
A K GA+A++ ++++IE
Sbjct: 57 ENAVKNGAMALIVERDVNIE 76
>gi|423346171|ref|ZP_17323859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides merdae CL03T12C32]
gi|409220969|gb|EKN13922.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides merdae CL03T12C32]
Length = 490
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL+ +V+ V G+ +VEI+GIQ DSR V G LFV G DGH Y+ A
Sbjct: 1 MELKELIHPLEVL--EVVGNTDVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIG 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIR 343
+GA A+V C+ + + D ++ + P+FI ++
Sbjct: 59 KGAAAIV------------CEEIPALSDEDIQVSESKPVFIRVK 90
>gi|337268017|ref|YP_004612072.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
opportunistum WSM2075]
gi|336028327|gb|AEH87978.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
opportunistum WSM2075]
Length = 484
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L D ++PV ++E+TGI DSR V G +F G K DG Y ++A +RGAV
Sbjct: 2 KLRDLDGILPVEGTASADLEVTGISSDSRQVKPGVIFFALAGSKADGSAYAADAARRGAV 61
Query: 304 AVVASKEIDIEETLGCKAL--VIVEDTNLVLPHWLPLFIG 341
A+V +K T+G + + V+D L L F G
Sbjct: 62 AIVTAK----GSTVGGHPIPVLAVDDPRLALALGAARFFG 97
>gi|403236698|ref|ZP_10915284.1| UDP-N-acetylmuramyl tripeptide synthetase [Bacillus sp. 10403023]
Length = 526
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
++EI+G+ + S V G LFVC G KTDGH YLS+A GAVA V D++E L
Sbjct: 21 DIEISGLSYHSGKVKEGHLFVCIKGYKTDGHKYLSQAISSGAVAAVVE---DVQEGLEIP 77
Query: 321 ALVIVEDTNLVLPHWLPLF 339
+V V+++ + L F
Sbjct: 78 QIV-VKNSRIALARLAAKF 95
>gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus sp. HGF5]
gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus sp. HGF5]
Length = 503
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L L D +++ + G +IT ++ DSR + G +FVC G DGH Y +A +
Sbjct: 1 MILQSLTD--RLILKKITGSTSADITNLETDSREIRPGGVFVCVPGFHVDGHDYAEQAIR 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GAVA+VA +E + G + V DT +LP F G
Sbjct: 59 NGAVAIVAERE--LSGLPGNVTHITVPDTRRILPILANAFFG 98
>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Halothermothrix orenii H 168]
gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Halothermothrix orenii H 168]
Length = 461
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
MSLAE+ + V + GD + +IT I DSR ++ GD+FV +G + DGH ++ EA
Sbjct: 4 MSLAEI--RNAVSGKIIQGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFIPEAVS 61
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
+GA A++ I +G +++VEDT L
Sbjct: 62 KGARALIVDHSIKAYPGVG---IILVEDTTRAL 91
>gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
italicus Ab9]
gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
italicus Ab9]
Length = 483
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L+D K V + GD ++I G+ +DSR LF+ G KTDG LY+ EA K GA+
Sbjct: 2 KLIDILKGVNCEIKGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAI 61
Query: 304 AVVASKEI 311
AVV +EI
Sbjct: 62 AVVVDREI 69
>gi|333371334|ref|ZP_08463286.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
partial [Desmospora sp. 8437]
gi|332976264|gb|EGK13126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Desmospora sp. 8437]
Length = 70
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L L+D V ++ G+ ++EITG++ DSR V GDLF+ G DGH ++ +A +
Sbjct: 1 MNLNTLIDSLAVAQIT--GNTDLEITGMEVDSRRVRPGDLFIALKGFTVDGHRFIRQAVE 58
Query: 300 RGAVAVVASKEI 311
+GA AVV +E+
Sbjct: 59 KGARAVVLEEEM 70
>gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 496
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+ GD E TGI DSR V GDLF+C G DGH Y +A+++GA A+V + +D
Sbjct: 15 IRGDGETSCTGIAIDSRKVQPGDLFICLPGHTVDGHDYARQAEEQGAAALVVERWLD 71
>gi|359412523|ref|ZP_09204988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. DL-VIII]
gi|357171407|gb|EHI99581.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. DL-VIII]
Length = 486
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V G+++VEI I +DSR V + D+FVC G TDGH Y+ +A + GA VV I+I++
Sbjct: 15 VQGNIDVEINKINYDSRKVKSLDVFVCIKGYATDGHKYIDKAIENGAKVVVIQDSIEIKD 74
Query: 316 T 316
Sbjct: 75 N 75
>gi|398304272|ref|ZP_10507858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus vallismortis DV1-F-3]
Length = 494
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL P SV + EIT I+ DSR V G LFVC G DGH + +A +
Sbjct: 1 MKLTKLLRYLTTEP-SVNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVE 59
Query: 300 RGAVAVVASKEIDIE 314
GA A+VA +E+D++
Sbjct: 60 SGAAAIVAERELDVD 74
>gi|357027595|ref|ZP_09089668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mesorhizobium amorphae CCNWGS0123]
gi|355540575|gb|EHH09778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mesorhizobium amorphae CCNWGS0123]
Length = 484
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L D + ++PV L++E+TGI DSR V G +F G K DG Y +A KRGA
Sbjct: 2 QLKDLAGILPVEGTASLDLEVTGISSDSRQVKPGVVFFALTGTKADGVTYAEDAAKRGAA 61
Query: 304 AVVASKEIDI 313
+VA K I
Sbjct: 62 VIVAGKSSAI 71
>gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Granulibacter bethesdensis CGDNIH1]
gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Granulibacter bethesdensis CGDNIH1]
Length = 539
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 237 KFKMSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLS 295
+ M L+ LL ++ PV S+ G V I+GI DSR V G +F G+KTDG +++
Sbjct: 47 RVMMMLSNLLADTSAAPVTSLTGMAGVHISGITADSRQVMPGWVFAALPGQKTDGRRFIA 106
Query: 296 EADKRGAVAVVA 307
+A +RGA A++A
Sbjct: 107 DAVERGAAAILA 118
>gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus m1293]
gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus m1293]
Length = 499
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD++VEITG++ DSR ++ GDLF+C G D H ++ A K GAVA++ ++++IE
Sbjct: 24 GDMDVEITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEGAVKNGAVALIVERDVNIE 83
>gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus G9241]
gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus G9241]
Length = 499
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
G+++VEITG++ DSR ++ GDLF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 24 GNMDVEITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 83
>gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Stigmatella aurantiaca DW4/3-1]
gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase
[Stigmatella aurantiaca DW4/3-1]
gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Stigmatella aurantiaca DW4/3-1]
gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Stigmatella aurantiaca DW4/3-1]
Length = 507
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L VS G V++TG+ DSR V GDLFV G K DG Y+ EA
Sbjct: 1 MKLTDVLAGCGAEQVS-GGRSSVDVTGVTQDSRRVKPGDLFVAVPGTKEDGAQYVGEAVS 59
Query: 300 RGAVAVVASKEI 311
RGAVAVV+ K +
Sbjct: 60 RGAVAVVSEKPV 71
>gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacillus cereus ATCC 10987]
gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus ATCC 10987]
Length = 492
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
G+++VEITG++ DSR ++ GDLF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GNMDVEITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|30316382|sp|Q8R9G2.2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
Length = 482
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 245 LLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVA 304
L+D K V + G+ V+I+G+ +DSR LF+ G KTDG LY+ EA K GAVA
Sbjct: 3 LVDLLKGVKHEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNGAVA 62
Query: 305 VVASKEIDIEETLGCKALVIVEDTNLVL 332
VV + DI E G +V+VED +
Sbjct: 63 VVTDR--DISEYPGV-TVVLVEDARAAM 87
>gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria ivanovii FSL F6-596]
gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria ivanovii FSL F6-596]
Length = 491
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 240 MSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L+EL+ + +PV + +E+ I DSR V+ G LF+C G DGH + +A+
Sbjct: 1 MKLSELM---QAIPVFTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQFAKKAE 57
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+ GAVA++A K +D+ ++ V DT + F G
Sbjct: 58 ELGAVAIIAEKTVDV-----AIPVIYVRDTKRAMAMLANYFYG 95
>gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfotomaculum
acetoxidans DSM 771]
gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
acetoxidans DSM 771]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M E+L +V+ S G+ E+++TGI +DSR + G LFV G +TDGH Y+ +A
Sbjct: 1 MLFGEILQSVEVL--SAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVN 58
Query: 300 RGAVAVVASKEI 311
GAVAV+ K++
Sbjct: 59 NGAVAVILQKDM 70
>gi|348026407|ref|YP_004766212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera elsdenii DSM
20460]
gi|341822461|emb|CCC73385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera elsdenii DSM
20460]
Length = 501
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
++ EL + K + ++ G + ITGI DSR + AG LFVC G DG + ++A ++
Sbjct: 4 TVGELCKQIKGI-YNLNGSADTVITGISSDSRQIEAGYLFVCISGVHVDGAAFAAQAVEK 62
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GAVAV+ +K +D+ ++ + V D + L +P F
Sbjct: 63 GAVAVLTTKHLDLPKS---TVQIQVPDIHHALEDMVPFF 98
>gi|424823808|ref|ZP_18248821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
ligase [Listeria monocytogenes str. Scott A]
gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
ligase [Listeria monocytogenes str. Scott A]
Length = 494
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 239 KMSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 3 RMKLNELM---QAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRA 59
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 60 VELGAVAIIAEKQLDV 75
>gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes str. 1/2a F6854]
gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes str. 1/2a F6854]
Length = 410
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL+ + +PV G++ +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPV-FTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRA 56
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 57 VELGAVAIIAEKQVDV 72
>gi|333896890|ref|YP_004470764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112155|gb|AEF17092.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacterium xylanolyticum LX-11]
Length = 488
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L + V +V G+++V++ GI +DSR G LFV G K DG Y+++A +
Sbjct: 1 MRLVDILKD--VNYTTVKGNIDVDVKGICYDSRNSKEGSLFVAIKGFKFDGADYINDAVE 58
Query: 300 RGAVAVVASKEIDIEE 315
RGAVA+V +E+ I++
Sbjct: 59 RGAVAIVVEREVSIDK 74
>gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 483
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L+D K V + GD ++I G+ +DSR LF+ G KTDG LY+ EA K GA+
Sbjct: 2 KLIDILKGVNCEIKGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAI 61
Query: 304 AVVASKEI 311
A+V +EI
Sbjct: 62 AIVVDREI 69
>gi|385264645|ref|ZP_10042732.1| MurE [Bacillus sp. 5B6]
gi|385149141|gb|EIF13078.1| MurE [Bacillus sp. 5B6]
Length = 500
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 232 RIVEPKFKMSLAELLDESKVVPVSVYGDL-EVEITGIQHDSRVVSAGDLFVCCVGRKTDG 290
RI E M L +LL PV D + +IT I+ DSR V G LFVC G DG
Sbjct: 3 RISERFDTMKLTKLLTYLMAEPVQ--NDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDG 60
Query: 291 HLYLSEADKRGAVAVVASKEIDIE 314
H + +A + GA A+VA KE+D++
Sbjct: 61 HDFAQKAAENGAAAIVAEKELDVD 84
>gi|345021958|ref|ZP_08785571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Ornithinibacillus scapharcae TW25]
Length = 489
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
++EI I+ DSR + GD+FVC G DGH Y+ EA GAV VVA KE++ +
Sbjct: 21 DLEINAIKMDSREIEKGDIFVCINGFTVDGHDYVDEAVHNGAVLVVAEKEMEAQ 74
>gi|337285811|ref|YP_004625284.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermodesulfatator
indicus DSM 15286]
gi|335358639|gb|AEH44320.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermodesulfatator
indicus DSM 15286]
Length = 480
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
E I G+ DSR V G FV C G DGH ++ +A + GAVA++A +++D+ + +
Sbjct: 20 ETPIAGLTDDSREVKPGYAFVACRGTSADGHKFIPQALEAGAVAILAERKLDLPDNI--- 76
Query: 321 ALVIVEDTNLVLPHWLPLF 339
A V++ DT LP F
Sbjct: 77 AQVVLPDTRKALPELASAF 95
>gi|387898096|ref|YP_006328392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens Y2]
gi|387172206|gb|AFJ61667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens Y2]
Length = 500
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 232 RIVEPKFKMSLAELLDESKVVPVSVYGDL-EVEITGIQHDSRVVSAGDLFVCCVGRKTDG 290
RI E M L +LL PV D + +IT I+ DSR V G LFVC G DG
Sbjct: 3 RISERFDTMKLTKLLTYLMAEPVQ--NDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDG 60
Query: 291 HLYLSEADKRGAVAVVASKEIDIE 314
H + +A + GA A+VA KE+D++
Sbjct: 61 HDFAQKAAENGAAAIVAEKELDVD 84
>gi|365873703|ref|ZP_09413236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermanaerovibrio velox DSM 12556]
gi|363983790|gb|EHM09997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermanaerovibrio velox DSM 12556]
Length = 463
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 266 GIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGA-VAVVASKEIDIEET-LGCKALV 323
GI DSR V +GDLFV G +TDGH Y+S+A K GA A+V ++DI + +GC ++V
Sbjct: 30 GISIDSRDVKSGDLFVAIEGNRTDGHKYVSQAFKSGASCALVKRSKLDIVKAPMGC-SIV 88
Query: 324 IVEDTNLVLP----HWL----PLFIGI 342
V+DT L WL P IGI
Sbjct: 89 AVDDTEKTLALAAREWLDRVSPRVIGI 115
>gi|386044345|ref|YP_005963150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2 [Listeria monocytogenes
10403S]
gi|404411339|ref|YP_006696927.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC5850]
gi|345537579|gb|AEO07019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2 [Listeria monocytogenes
10403S]
gi|404231165|emb|CBY52569.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC5850]
Length = 491
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL+ + +PV G++ +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPV-FTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRA 56
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 57 VELGAVAIIAEKQVDV 72
>gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165]
gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes J2818]
gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900]
gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
gi|386047690|ref|YP_005966022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes J0161]
gi|386054292|ref|YP_005971850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes Finland 1998]
gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165]
gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900]
gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes J2818]
gi|345534681|gb|AEO04122.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes J0161]
gi|346646943|gb|AEO39568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes Finland 1998]
gi|441471839|emb|CCQ21594.1| 6-diaminopimelate ligase [Listeria monocytogenes]
gi|441474975|emb|CCQ24729.1| 6-diaminopimelate ligase [Listeria monocytogenes N53-1]
Length = 491
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL+ + +PV G++ +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPV-FTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRA 56
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 57 VELGAVAIIAEKQVDV 72
>gi|403386630|ref|ZP_10928687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium sp. JC122]
Length = 481
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L++LL+ E K+V G+ ++ + IQ+DSR + GD F C G DGH Y+ A
Sbjct: 1 MRLSKLLNNIEYKIVK----GNSDINVKAIQYDSRKIKNGDAFFCIEGFVVDGHDYIKAA 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
++GA ++ + I+I E + +V+VE++ L
Sbjct: 57 IEKGAKVIIVQRNIEISEDV---TVVLVENSRKTLA 89
>gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
16795]
gi|164602357|gb|EDQ95822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium bartlettii DSM 16795]
Length = 485
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L + +++ SV G ++++I I +DSR V +F+C G DGH Y+ +A +
Sbjct: 1 MELLKILKDVEIL--SVNGQVDIDIEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQ 58
Query: 300 RGAVAVVASKEI 311
+GA+A++ K+I
Sbjct: 59 KGAIAILIDKKI 70
>gi|345860032|ref|ZP_08812361.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Desulfosporosinus sp. OT]
gi|344326893|gb|EGW38342.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Desulfosporosinus sp. OT]
Length = 495
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 236 PKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLS 295
P +SL E+L+ +V S GDL+V ++G+ DSR V +GDL+ C G + DGH + +
Sbjct: 2 PIASISLLEILNGIEVEASS--GDLQVVVSGMSMDSRRVQSGDLYACIPGFQVDGHDFAA 59
Query: 296 EADKRGAVAVVASK 309
A GAVA+V +
Sbjct: 60 GAIASGAVALVVER 73
>gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acetohalobium arabaticum DSM 5501]
gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Acetohalobium arabaticum DSM 5501]
Length = 496
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
GDL+ I GI +DSR V LFVC G DGH Y+ EA GA A++ KE++++ +
Sbjct: 18 GDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDSGATALLVEKEVEVDSEV 77
Query: 318 GCKALVIVEDTNLVLPHWLPLF 339
++ +DT L L F
Sbjct: 78 ---TVIKTDDTRLGLAEVSAAF 96
>gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium beijerinckii NCIMB 8052]
gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
NCIMB 8052]
Length = 486
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 255 SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
S+ GD+++E+ I +DSR D+FVC G TDGH Y+ +A + GA +V +I+I+
Sbjct: 14 SIQGDIDIEVNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENGAKVIVIQDDIEIK 73
Query: 315 E 315
+
Sbjct: 74 D 74
>gi|374301718|ref|YP_005053357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio africanus str. Walvis Bay]
gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio africanus str. Walvis Bay]
Length = 468
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+T +Q DSRVV GDLFVC G + DGH + ++A ++GAVAV+A + +
Sbjct: 24 VTRVQIDSRVVQPGDLFVCLPGERVDGHSFAADAVRKGAVAVLAQRPL 71
>gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Oceanobacillus iheyensis HTE831]
gi|30316004|sp|Q8CZE6.1|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
1
gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
(EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
Length = 493
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +LL+ + +V G++E EIT ++ DSR +++G FVC G DGH Y+ +A
Sbjct: 1 MELKKLLE--CLTFYNVNGEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAV 58
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
K GA A+ SK + E + ++ VEDTN L
Sbjct: 59 KNGASAIFTSKPLMKEYGV---PIIQVEDTNRALA 90
>gi|336422126|ref|ZP_08602280.1| hypothetical protein HMPREF0993_01657 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009416|gb|EGN39410.1| hypothetical protein HMPREF0993_01657 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 488
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G EVE+T + +DSR V+ G +FVC G +DGH Y+ + +GA AV+ + +D + L
Sbjct: 17 GSDEVEVTQLNNDSRKVTEGSVFVCISGAVSDGHKYIDDVAAKGAAAVIVERPVDAPKGL 76
Query: 318 GCKALVIVEDTNLVLPHWLPLFIG 341
++ V+DT L + G
Sbjct: 77 ---TVIHVDDTRYALALMSAAYFG 97
>gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J2-003]
Length = 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL+ + +PV G++ +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPV-FTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRA 56
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 57 VELGAVAIIAEKQVDV 72
>gi|433655387|ref|YP_007299095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293576|gb|AGB19398.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 484
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M LA++L + + V G+++V+I GI +DSR G +FV G K+DG Y+ +A +
Sbjct: 1 MRLADVLKDIEYTIVK--GNVDVDIRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
RGAVAV+ EI I++ + L+ V++T L + G
Sbjct: 59 RGAVAVLVDGEISIDKDI---TLIKVQNTRKSLAKIASNYYG 97
>gi|427724885|ref|YP_007072162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leptolyngbya sp. PCC 7376]
gi|427356605|gb|AFY39328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leptolyngbya sp. PCC 7376]
Length = 446
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
G++ E+ I D+R + GD+FV VG + DGH Y+++A GA+AV+ S EIDI+
Sbjct: 24 GEVSGEVRHISTDTREIGKGDIFVALVGERFDGHDYVTKAVASGAIAVITSHEIDID 80
>gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL F2-515]
Length = 242
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL+ + +PV G++ +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVFT-GEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRA 56
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 57 VELGAVAIIAEKQVDV 72
>gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes EGD-e]
gi|386051013|ref|YP_005969004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL R2-561]
gi|404284535|ref|YP_006685432.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2372]
gi|404414116|ref|YP_006699703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC7179]
gi|405759089|ref|YP_006688365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2479]
gi|21362688|sp|Q8Y5L9.1|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e]
gi|346424859|gb|AEO26384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL R2-561]
gi|404234037|emb|CBY55440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2372]
gi|404236971|emb|CBY58373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2479]
gi|404239815|emb|CBY61216.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC7179]
Length = 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL+ + +PV G++ +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPV-FTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRA 56
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 57 VELGAVAIIAEKQVDV 72
>gi|354581322|ref|ZP_09000226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
gi|353201650|gb|EHB67103.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus lactis
154]
Length = 503
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L L D ++ ++ G +EIT + DSR + G LF+C G + DGH Y +A
Sbjct: 1 MNLKSLTD--GLILKTITGTTSLEITNLDTDSRNIKPGGLFICVPGFRVDGHDYARDAVT 58
Query: 300 RGAVAVVASKEI-DIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GAVAVVA +++ D+ + C + V D LP F G
Sbjct: 59 NGAVAVVAEQDLPDLPADVTC---IKVPDVRRALPILANAFFG 98
>gi|451818346|ref|YP_007454547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase 2 [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451784325|gb|AGF55293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase 2 [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 489
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL + K ++ G ++++I+ I +DSR + +FVC G +GH Y+ EA K
Sbjct: 1 MKLYKLLQDIKYEVIN--GGVDIDISNISYDSRKIKEDSIFVCINGANVNGHDYIKEAIK 58
Query: 300 RGAVAVVASKEIDI 313
+GA+A++ +EI +
Sbjct: 59 KGALAIIIEEEIQV 72
>gi|444914626|ref|ZP_21234768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cystobacter fuscus DSM 2262]
gi|444714485|gb|ELW55366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cystobacter fuscus DSM 2262]
Length = 506
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
G V++TG+ DSR V GDLFV G K DG Y+ EA RGAVAVV+ K
Sbjct: 18 GRTPVDVTGVSQDSRKVKPGDLFVAVPGAKEDGAQYVGEAVSRGAVAVVSEK 69
>gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 484
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M LA++L + + V G+++V+I GI +DSR G +FV G K+DG Y+ +A +
Sbjct: 1 MRLADVLKDIEYTIVK--GNVDVDIRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
RGAVAV+ EI I++ + L+ V++T L + G
Sbjct: 59 RGAVAVLVDGEISIDKDI---TLIKVQNTRKSLAKIASNYYG 97
>gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella amnii CRIS 21A-A]
gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella amnii CRIS 21A-A]
Length = 485
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL E K +S+ GD +++ITG+ DSR + G +FV G + DGH ++++A +
Sbjct: 1 MKLTDLLSEVK--TLSITGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFINKAIE 58
Query: 300 RGAVAVV 306
GA A++
Sbjct: 59 SGAKAIL 65
>gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
partial [Listeria monocytogenes HCC23]
gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes HCC23]
Length = 293
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum B str. Eklund 17B]
gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum B str. Eklund 17B]
Length = 484
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
V G L+ EI+ I +DSR V+ D+F+C G TDGH Y+ +A + GA ++ +I++
Sbjct: 15 VQGSLDKEISSINYDSRKVNKSDIFICIKGYATDGHKYIQKAIENGASVIIMQDDIEV 72
>gi|386008802|ref|YP_005927080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria monocytogenes L99]
gi|386027412|ref|YP_005948188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria monocytogenes M7]
gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria monocytogenes L99]
gi|336023993|gb|AEH93130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria monocytogenes M7]
Length = 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 484
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
V G L+ EI+ + +DSR V D+F+C G TDGH Y+ +A + GA ++ EI++
Sbjct: 15 VQGSLDKEISSVNYDSRKVKKSDVFICIKGYATDGHKYIQKAIENGASVIIMQDEIEV 72
>gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium beijerinckii NCIMB 8052]
gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
NCIMB 8052]
Length = 489
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL + +S G ++++ + +DSR V G +F+C G DGH Y+ EA K
Sbjct: 1 MKLYNLLKDLDYEIIS--GSVDIDARSVSYDSRKVKGGSVFICIKGANADGHDYIDEAIK 58
Query: 300 RGAVAVVASKEIDIE-ETLGCKALVIVEDTNLVLPHWLPLF 339
GA+A+V +EI I+ E + ++ V +T L L +F
Sbjct: 59 SGALAIVIQEEIKIDNENI---TVIKVRNTKLALASIANVF 96
>gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium
cellulovorans 743B]
gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium cellulovorans 743B]
gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
cellulovorans 743B]
Length = 481
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L EL+ + ++ GD++V+I GIQ+DSR V++ D+FVC G DGH + +A
Sbjct: 1 MNLKELIKDLDYEVLN--GDIDVDINGIQYDSRKVNSSDVFVCIPGFTVDGHNFAEKAVN 58
Query: 300 RGAVAVVASKEI 311
GA ++ K+I
Sbjct: 59 SGANVIICEKDI 70
>gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J2-071]
gi|404408474|ref|YP_006691189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2376]
gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J2-071]
gi|404242623|emb|CBY64023.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2376]
Length = 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. 168]
gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. 168]
gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. JH642]
gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. SMY]
gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis BSn5]
gi|384175260|ref|YP_005556645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|402775763|ref|YP_006629707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacillus subtilis QB928]
gi|428279112|ref|YP_005560847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. natto BEST195]
gi|452914381|ref|ZP_21963008.1| UDP-N-acetylmuramyl-tripeptide synthetase family protein [Bacillus
subtilis MB73/2]
gi|417328|sp|Q03523.1|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168]
gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. 168]
gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus subtilis subsp. natto BEST195]
gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis BSn5]
gi|349594484|gb|AEP90671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|402480946|gb|AFQ57455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino pimelate
[Bacillus subtilis QB928]
gi|407958925|dbj|BAM52165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Synechocystis sp. PCC 6803]
gi|407964502|dbj|BAM57741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis BEST7003]
gi|452116801|gb|EME07196.1| UDP-N-acetylmuramyl-tripeptide synthetase family protein [Bacillus
subtilis MB73/2]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
EIT I+ DSR V G LFVC G DGH + +A + GA A+VA +E+D+
Sbjct: 23 EITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV 73
>gi|430756000|ref|YP_007209780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. BSP1]
gi|430020520|gb|AGA21126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus subtilis subsp. subtilis str. BSP1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
EIT I+ DSR V G LFVC G DGH + +A + GA A+VA +E+D+
Sbjct: 23 EITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV 73
>gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl tripeptide synthetase [Sphaerobacter
thermophilus DSM 20745]
gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
thermophilus DSM 20745]
Length = 513
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 240 MSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M+ + D + +PV S GDL +T + +DSR+ G LFV G TDGH +L++A
Sbjct: 1 MTQSRFSDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADAR 60
Query: 299 KRGAV-AVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
RGAV A+V S E D+ A V +T LP F G
Sbjct: 61 ARGAVAALVESWEPDLANY---PAYAAVPNTRAALPLVAATFFG 101
>gi|384180477|ref|YP_005566239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
Length = 146
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
G+++VEITG++ DSR ++ GDLF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GNMDVEITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
ethanolicus JW 200]
gi|392940679|ref|ZP_10306323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
siderophilus SR4]
gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
ethanolicus JW 200]
gi|392292429|gb|EIW00873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
siderophilus SR4]
Length = 483
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L+D K V + GD ++I+G+ +DSR LF+ G KTDG Y+ EA K GAV
Sbjct: 2 KLIDILKGVNCEIKGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAV 61
Query: 304 AVVASKEI 311
AVV +EI
Sbjct: 62 AVVTDREI 69
>gi|443632815|ref|ZP_21116994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347638|gb|ELS61696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
EIT I+ DSR V G LFVC G DGH + +A + GA A+VA +E+D++
Sbjct: 23 EITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAERELDVD 74
>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
DSM 12680]
gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
DSM 12680]
Length = 459
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 243 AELLDESKVVPVSVY-GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
+ LLD ++ + ++ G ++EITG+ +SR GD+F G + DGH ++ EA + G
Sbjct: 3 SRLLDIARAIEGNIIQGRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNG 62
Query: 302 AVAVVASKEIDIEETLGCKALVIVEDTN---LVLPHW 335
A+A V S+ + + + LG + L++V D +L W
Sbjct: 63 ALAAVVSRPVSLPQGLGERGLILVRDVKKALQMLARW 99
>gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
haemolysans ATCC 10379]
gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
haemolysans ATCC 10379]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M++ +++D KV ++YG+L + I DSR V GD+FV G DGH Y+ + +
Sbjct: 1 MNILDIIDNIKVK--TIYGNLPESVNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIE 58
Query: 300 RGAVAVVASK--EIDIEETLGCKALVIVE 326
+GA V+AS+ ++E C +VI E
Sbjct: 59 QGAALVIASRYENYNVEN---CAVIVIKE 84
>gi|342215658|ref|ZP_08708305.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341586548|gb|EGS29948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 417
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+ ++LD V+P EITGI + S++V G+LFV G DGH Y+ +A K
Sbjct: 10 MATIDVLDSKGVLPT--------EITGIHYHSQMVQGGNLFVAIPGELVDGHKYIPDAIK 61
Query: 300 RGAVAVVASK 309
GA VV SK
Sbjct: 62 NGASVVVCSK 71
>gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus AH1271]
gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus AH1271]
Length = 500
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
G++ VEITG++ DSR +++G+LF+C G D H ++ +A K GAVA++ ++++I+
Sbjct: 24 GNMNVEITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIQ 83
>gi|384265102|ref|YP_005420809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|380498455|emb|CCG49493.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+IT I+ DSR V G LFVC G DGH + +A + GA A+VA KE+D++
Sbjct: 23 DITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKELDVD 74
>gi|452855468|ref|YP_007497151.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079728|emb|CCP21485.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+IT I+ DSR V G LFVC G DGH + +A + GA A+VA KE+D++
Sbjct: 23 DITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKELDVD 74
>gi|375362165|ref|YP_005130204.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|394993855|ref|ZP_10386595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. 916]
gi|421731811|ref|ZP_16170934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|429505072|ref|YP_007186256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|451347110|ref|YP_007445741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens IT-45]
gi|371568159|emb|CCF05009.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|393805426|gb|EJD66805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. 916]
gi|407074024|gb|EKE47014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|429486662|gb|AFZ90586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|449850868|gb|AGF27860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens IT-45]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+IT I+ DSR V G LFVC G DGH + +A + GA A+VA KE+D++
Sbjct: 23 DITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKELDVD 74
>gi|384159499|ref|YP_005541572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens TA208]
gi|384164064|ref|YP_005545443.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens LL3]
gi|384168550|ref|YP_005549928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens XH7]
gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens TA208]
gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens LL3]
gi|341827829|gb|AEK89080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens XH7]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+IT I+ DSR V G LFVC G DGH + +A + GA A+VA KE+D++
Sbjct: 23 DITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKELDVD 74
>gi|345017943|ref|YP_004820296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033286|gb|AEM79012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 483
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L+D K V + GD ++I+G+ +DSR LF+ G KTDG Y+ EA K GAV
Sbjct: 2 KLIDILKGVNCEIKGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAV 61
Query: 304 AVVASKEI 311
AVV +EI
Sbjct: 62 AVVTDREI 69
>gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus amyloliquefaciens FZB42]
gi|166224771|sp|A7Z4E1.1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+IT I+ DSR V G LFVC G DGH + +A + GA A+VA KE+D++
Sbjct: 23 DITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKELDVD 74
>gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens DSM 7]
gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus amyloliquefaciens DSM 7]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+IT I+ DSR V G LFVC G DGH + +A + GA A+VA KE+D++
Sbjct: 23 DITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKELDVD 74
>gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes serotype 4b str. F2365]
gi|405753266|ref|YP_006676731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2378]
gi|67460841|sp|Q71XX5.1|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes serotype 4b str. F2365]
gi|404222466|emb|CBY73829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2378]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes str. 4b H7858]
gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J1-194]
gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes HPB2262]
gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J2-064]
gi|386732781|ref|YP_006206277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes 07PF0776]
gi|405750393|ref|YP_006673859.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes ATCC 19117]
gi|405756210|ref|YP_006679674.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2540]
gi|406704826|ref|YP_006755180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes L312]
gi|417315692|ref|ZP_12102365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes J1816]
gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes str. 4b H7858]
gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
ligase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes HPB2262]
gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J1-194]
gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes J1816]
gi|384391539|gb|AFH80609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes 07PF0776]
gi|404219593|emb|CBY70957.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes ATCC 19117]
gi|404225410|emb|CBY76772.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2540]
gi|406361856|emb|CBY68129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes L312]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl tripeptide synthetase [Exiguobacterium
sibiricum 255-15]
gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
sibiricum 255-15]
Length = 489
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
+ P + ++ ITGI DSR V+ G L++C G DGH Y EA GAVA++A +
Sbjct: 12 IAPFHLTCEVNPSITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAVANGAVAILAEEP 71
Query: 311 IDIEETLGCKALVIVEDT 328
ID E +V+++DT
Sbjct: 72 IDGVEV----PVVLLQDT 85
>gi|406668915|ref|ZP_11076206.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Facklamia ignava CCUG 37419]
gi|405585196|gb|EKB59031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Facklamia ignava CCUG 37419]
Length = 475
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
D E+ ITG++ DSR + GDLFV G +DGH Y+ A ++GAVA S+E D +
Sbjct: 24 DHEINITGVEFDSRKIKPGDLFVPLTGGASDGHDYVVNAIEQGAVATFWSREAD-SAPID 82
Query: 319 CKALVIVEDT 328
A++ V+DT
Sbjct: 83 QLAVIYVDDT 92
>gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL R2-503]
gi|404281652|ref|YP_006682550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2755]
gi|404287463|ref|YP_006694049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Listeria monocytogenes FSL R2-503]
gi|404228287|emb|CBY49692.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes SLCC2755]
gi|404246392|emb|CBY04617.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Listeria monocytogenes serotype 7 str. SLCC2482]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus AH187]
gi|423352353|ref|ZP_17329980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus IS075]
gi|423568537|ref|ZP_17544784.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus MSX-A12]
gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus cereus AH187]
gi|401092047|gb|EJQ00183.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus IS075]
gi|401210825|gb|EJR17576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus MSX-A12]
Length = 237
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRK---TDGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRK---TDGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 24 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE 83
>gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Listeria monocytogenes FSL N1-017]
gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Listeria monocytogenes FSL N1-017]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii str. W23]
gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL----- 317
EIT I+ DSR V G LFVC G DGH + +A + GA A+VA +E+D++ +
Sbjct: 23 EITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAERELDVDVPVIIVRR 82
Query: 318 GCKALVIVEDTNLVLPHWLPLFIGI 342
+AL ++ D P IGI
Sbjct: 83 SLRALSVLSDAFYGQPTKKLQLIGI 107
>gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. A1055]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus BDRD-ST26]
gi|375284555|ref|YP_005104994.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus cereus NC7401]
gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus BDRD-ST26]
gi|358353082|dbj|BAL18254.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Bacillus cereus NC7401]
Length = 244
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRK---TDGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 24 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE 83
>gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus AH820]
gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus AH820]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus clausii KSM-K16]
gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus clausii KSM-K16]
Length = 488
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+YG V+ITGI ++S+ V GDLF+ G DGH ++ +A GA AV+ KEI
Sbjct: 15 LYGSDAVDITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAGAKAVIGEKEI 70
>gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Carnobacterium sp. 17-4]
gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Carnobacterium sp. 17-4]
Length = 492
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+EIT + D+R V G LFVC +G +GH EA ++GAV VVAS+ +D+E
Sbjct: 23 LEITKVTQDTREVEPGSLFVCIIGSLHNGHELAKEAVQKGAVLVVASEPLDVE 75
>gi|374385851|ref|ZP_09643353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Odoribacter laneus YIT
12061]
gi|373224796|gb|EHP47132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Odoribacter laneus YIT
12061]
Length = 483
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL E + V G +++I + DSR + GDLFV G DGHLY+ +A +
Sbjct: 1 MKLEELLKE--IGAKQVCGPTDLDIREVHFDSRKIGQGDLFVALRGVNVDGHLYIEKAME 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRR 345
GAVAVV E E+ V V D+ L + L F G R
Sbjct: 59 AGAVAVVC--EQLPEQLHAGLCYVSVADSAFALGNILSAFFGYPSR 102
>gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus cereus biovar anthracis str. CI]
gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus cereus biovar anthracis str. CI]
Length = 492
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GDMNVKITGLEIDSRKITNGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus ATCC 4342]
gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus cereus ATCC 4342]
Length = 499
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 24 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 83
>gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella sp. oral taxon 299 str. F0039]
gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella sp. oral taxon 299 str. F0039]
Length = 484
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M +++L+ S + P+ + GD EI G+ DSR + A LF+ G + DGH Y+ A +
Sbjct: 1 MIISKLI--SSIKPIEIIGDANKEIVGVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIE 58
Query: 300 RGAVAVVA 307
+GAVAV+
Sbjct: 59 KGAVAVLC 66
>gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J1-175]
Length = 513
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes LO28]
Length = 178
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL+ + +PV G++ +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPV-FTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRA 56
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 57 VELGAVAIIAEKQVDV 72
>gi|423551646|ref|ZP_17527973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus ISP3191]
gi|401187484|gb|EJQ94557.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus ISP3191]
Length = 492
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
15606]
gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
15606]
Length = 483
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + P+ + G+ VEITG+ DSR + AG LFV G + DGH ++ +A +
Sbjct: 1 MKLNEVL--KNITPIKIVGNDNVEITGVNIDSRRIKAGHLFVAIRGTQVDGHQFIDKAIE 58
Query: 300 RGAVAVVA 307
GA AV+
Sbjct: 59 LGADAVLC 66
>gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
gi|167661927|gb|EDS06057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium scindens ATCC 35704]
Length = 504
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 238 FKMSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLS 295
F M L +LL+ E +V G EVE+T + +DSR V+ G +FVC G +DGH Y+
Sbjct: 15 FFMKLTQLLERLEYEVRQ----GSDEVEVTQLINDSRKVTEGSVFVCISGAVSDGHKYID 70
Query: 296 EADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+ +GA AV+ + +D + L ++ V+DT L + G
Sbjct: 71 DVAAKGAAAVIVERPVDAPKGL---TVIRVDDTRYALALMSAAYFG 113
>gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 499
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 24 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 83
>gi|429750470|ref|ZP_19283514.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
332 str. F0381]
gi|429165053|gb|EKY07131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
332 str. F0381]
Length = 489
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
EIT I DSR V G +FV VG ++GH+Y+ EA ++GAVA+V K
Sbjct: 25 EITSICFDSREVKPGCMFVAIVGTNSNGHIYIDEASRKGAVAIVCEK 71
>gi|399888849|ref|ZP_10774726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium arbusti SL206]
Length = 482
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+ G+L+++I I++DSR V+ DLFVC G TDGH Y+ + K GA ++ +K
Sbjct: 15 IKGNLKLDINKIEYDSRNVANNDLFVCIEGFSTDGHKYIESSVKSGASTIICTK 68
>gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl tripeptide synthetase [Caldicellulosiruptor
bescii DSM 6725]
gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
bescii DSM 6725]
Length = 486
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L++ V+ +V GD + +IT I ++S+ G +FVC G KTDGH Y++EA +
Sbjct: 1 MKLLDLIENIDVLETNV-GDFDKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQ 59
Query: 300 RGAVAVVASKEIDIEETLG 318
GA VV + D + G
Sbjct: 60 NGACLVVVDEFFDTSKIEG 78
>gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
[Bacillus anthracis str. CDC 684]
gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. CNEVA-9066]
gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. Western North America USA6153]
gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. Kruger B]
gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. Vollum]
gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. Australia 94]
gi|421511393|ref|ZP_15958265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. UR-1]
gi|421636384|ref|ZP_16076983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. BF1]
gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis
str. Sterne]
gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Bacillus anthracis str. CDC 684]
gi|401818555|gb|EJT17753.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. UR-1]
gi|403396912|gb|EJY94149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus anthracis str. BF1]
Length = 401
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 491
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV + +E++ I DSR V+ G LF+C G DGH + +A+
Sbjct: 1 MKLNELM---QAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAE 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVAVVA K +D+
Sbjct: 58 ELGAVAVVAEKPVDV 72
>gi|402557190|ref|YP_006598461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus FRI-35]
gi|401798400|gb|AFQ12259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus cereus FRI-35]
Length = 492
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
G+++VEITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 17 GNMDVEITGLEMDSRKITDGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 76
>gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cytophaga hutchinsonii ATCC 33406]
gi|122966615|sp|Q11RG9.1|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Cytophaga hutchinsonii ATCC 33406]
Length = 486
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV +SV G +V++T I DSR V G +F+ G +DGH ++++ ++GA AVV +
Sbjct: 9 KVSLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSFIADVIQKGATAVVCEE 68
Query: 310 EIDIEETLGC 319
+IE T C
Sbjct: 69 LPEIESTADC 78
>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius 653-L]
gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius 653-L]
Length = 467
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V GDLE ++ I DSR +F+ +G TDGH Y+ A G + S+E+DI +
Sbjct: 23 VIGDLEASLSSIVIDSRQAGPDTMFIAIIGENTDGHKYIKSAYDLGCRTFMVSQELDILD 82
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
L ++V V++T L + +
Sbjct: 83 QLDGSSIVCVDNTELAMGQLAKYY 106
>gi|313203977|ref|YP_004042634.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Paludibacter propionicigenes WB4]
gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Paludibacter propionicigenes WB4]
Length = 481
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
V+ + G++++ ++GIQ DSR V A ++FV G +DGH Y++ A + GAVA+V
Sbjct: 9 NVILLKTIGNIDINVSGIQFDSRKVEAENVFVATRGTASDGHQYIATAIENGAVAIVC 66
>gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
anthracis str. A2012]
Length = 391
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
GD+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 7 GDMNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 66
>gi|429727321|ref|ZP_19262095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius VPI 4330]
gi|429152773|gb|EKX95583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius VPI 4330]
Length = 467
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V GDLE ++ I DSR +F+ +G TDGH Y+ A G + S+E+DI +
Sbjct: 23 VIGDLEASLSSIVIDSRQAGPDTMFIAIIGENTDGHKYIKSAYDLGCRTFMVSQELDILD 82
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
L ++V V++T L + +
Sbjct: 83 QLDGSSIVCVDNTELAMGQLAKYY 106
>gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
gi|345514545|ref|ZP_08794056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides dorei 5_1_36/D4]
gi|423230227|ref|ZP_17216631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides dorei CL02T00C15]
gi|423241045|ref|ZP_17222159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides dorei CL03T12C01]
gi|423243939|ref|ZP_17225014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides dorei CL02T12C06]
gi|212664601|gb|EEB25173.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides dorei DSM 17855]
gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides dorei 5_1_36/D4]
gi|392631736|gb|EIY25705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides dorei CL02T00C15]
gi|392643107|gb|EIY36865.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides dorei CL03T12C01]
gi|392643457|gb|EIY37207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides dorei CL02T12C06]
Length = 484
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD+ EI+GI DSR++ G +F+ G +TDGH Y+ +A ++GA VV ++ E
Sbjct: 15 IIGDMAQEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVCE---NLPE 71
Query: 316 TLGCKALVI-VEDTNLVLPHWLPLFIG 341
TL I V DT V+ F G
Sbjct: 72 TLIENVTYIKVNDTEDVVGKLATTFYG 98
>gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 9_1_42FAA]
gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 9_1_42FAA]
Length = 484
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD+ EI+GI DSR++ G +F+ G +TDGH Y+ +A ++GA VV ++ E
Sbjct: 15 IIGDMAQEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVCE---NLPE 71
Query: 316 TLGCKALVI-VEDTNLVLPHWLPLFIG 341
TL I V DT V+ F G
Sbjct: 72 TLIENVTYIKVNDTEDVVGKLATTFYG 98
>gi|390559183|ref|ZP_10243542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrolancetus
hollandicus Lb]
gi|390174258|emb|CCF82834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrolancetus
hollandicus Lb]
Length = 515
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+SLA+LL + + + GD V I+ + +DSR+ G LFV G TDGH YL +A
Sbjct: 2 IAISLADLL--TGIPTTRLAGDSTVLISNLCYDSRLAGPGSLFVALRGSYTDGHRYLRDA 59
Query: 298 DKRGA-VAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
RGA A+V S E E G A+V V T + L F G
Sbjct: 60 RARGAHAALVESWE---PEVAGFPAVVQVPSTRVALAPLAARFFG 101
>gi|348618063|ref|ZP_08884595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, murF
[Candidatus Glomeribacter gigasporarum BEG34]
gi|347816575|emb|CCD29260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, murF
[Candidatus Glomeribacter gigasporarum BEG34]
Length = 468
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 240 MSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
MSL L + + ++P + GD V + DSR V+ G+LFV G + D H +L EA
Sbjct: 1 MSLFSLREAAALIPDARIIGDASVRFERVSTDSRTVAPGELFVALKGERFDAHDFLPEAV 60
Query: 299 KRGAVAVVASKE 310
KRGAVA + S++
Sbjct: 61 KRGAVAALVSRD 72
>gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
Length = 486
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L+ +V+ SV G+ +VE+ +++DSR V G LF+C G +DGH Y+ A +
Sbjct: 1 MKLNHILEGIEVL--SVVGNEDVEVLNVEYDSRKVEEGTLFICIKGFVSDGHRYIDSAYE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
+GA + ++D +E V VEDT
Sbjct: 59 KGARVFLIQDDVDFKEDC---TYVKVEDT 84
>gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis
SJ95]
gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95]
Length = 430
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 268 QHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
Q DSR V+ GD+F+C G KTDGHL++++A K GA V+ K++
Sbjct: 13 QIDSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIVEKDV 56
>gi|422419661|ref|ZP_16496616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria seeligeri FSL N1-067]
gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria seeligeri FSL N1-067]
Length = 491
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 240 MSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV + +E++ I DSR V+ G LF+C G DGH + +A+
Sbjct: 1 MKLNELM---QAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAE 57
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+ GAVAV+A K I++ ++ V DT + F G
Sbjct: 58 ELGAVAVIAEKPIEV-----AIPVIYVRDTKRAMAMLANYFYG 95
>gi|452992692|emb|CCQ95851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium ultunense Esp]
Length = 487
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
G+ ++I GIQHDSR +S ++F+ G DGH Y+ EA +GA +V K++ I++
Sbjct: 17 GNKNIDIQGIQHDSRKISKDNMFIAIEGFTVDGHSYIDEAIGKGANCIVVQKDVKIDK 74
>gi|397905153|ref|ZP_10506024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Caloramator australicus RC3]
gi|397161802|emb|CCJ33358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Caloramator australicus RC3]
Length = 480
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+EL+ + ++ +V+I I ++S+ V+ G LF+C G K DGH + EA
Sbjct: 1 MRLSELISG---IDSCIFVGNDVDIKHITYNSKDVTEGSLFICIEGFKVDGHHFAQEAVD 57
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
RGA A++ SK+I+I G LV V+DT
Sbjct: 58 RGAKALIISKDINI---FGDVTLVKVKDT 83
>gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella copri DSM 18205]
gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Prevotella copri DSM 18205]
Length = 487
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV + GD +VE+TG+ DSR + G LFV G + DGH ++ +A +
Sbjct: 1 MKLQELL--KNIEPVQIIGDADVEVTGVNIDSRKIKEGHLFVAMKGTQVDGHKFIPKALE 58
Query: 300 RGAVAVVA 307
GA +V+
Sbjct: 59 LGAKSVLC 66
>gi|350269805|ref|YP_004881113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Oscillibacter valericigenes Sjm18-20]
gi|348594647|dbj|BAK98607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Oscillibacter valericigenes Sjm18-20]
Length = 482
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL +V+ ++ D +EITG+ +DSR GD+FV G DGH Y+ +A++
Sbjct: 1 MKLKDLLAGVEVL--ELHADENLEITGVSYDSRKTQTGDVFVAISGYAMDGHAYIGKAEE 58
Query: 300 RGAVAVVASKE 310
GAV V ++
Sbjct: 59 AGAVCAVCERK 69
>gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
sp. Tu6071]
gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
sp. Tu6071]
Length = 487
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVAS 308
GD + ++TGI DSR V +G LFV GR+ DGH +L +A ++GAVA + S
Sbjct: 17 GDADTDVTGIATDSRQVRSGFLFVAVPGRRVDGHAHLEQAVEQGAVAALVS 67
>gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria monocytogenes FSL J1-208]
Length = 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 239 KMSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 3 RMKLNELM---QAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRA 59
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A ++D+
Sbjct: 60 VELGAVAIIAENQLDV 75
>gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 461
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 13/116 (11%)
Query: 237 KFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
F+M+L + D V + V D+E+ + DSR V +GDLFV G +TDGH ++ +
Sbjct: 3 SFRMTLGQAAD--LVGGILVGPDMELPRR-VALDSREVLSGDLFVALRGNRTDGHAFVGQ 59
Query: 297 ADKRGAVAVVA--SKEIDIEETLGCKALVIVEDTNLVLP----HWL----PLFIGI 342
A RGA ++ SK +I LG + + V D L L HWL P+ +GI
Sbjct: 60 ALSRGARCLLVEISKLEEIRPGLGGASCLAVPDPELALAEMASHWLKLVSPVVVGI 115
>gi|420158087|ref|ZP_14664910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. MSTE9]
gi|394755235|gb|EJF38497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. MSTE9]
Length = 487
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 245 LLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVA 304
L+D + + S GDL+V + + +DSR V AG FVC G DGH Y +A K GA A
Sbjct: 3 LIDLLQGMQYSAVGDLQVPVEDLIYDSRKVKAGCAFVCLRGSHADGHQYAEQAAKSGASA 62
Query: 305 VVASKEIDI 313
++A +++
Sbjct: 63 IIADHPLEL 71
>gi|423334583|ref|ZP_17312362.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides distasonis CL03T12C09]
gi|409225774|gb|EKN18692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides distasonis CL03T12C09]
Length = 486
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
V+IT IQ DSR V+ G LFV G DGH Y+ A ++GAVA+V + E G
Sbjct: 20 NVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAVAIVCEEAPSYLE--GRC 77
Query: 321 ALVIVEDT----NLVLPHW 335
+ ++V+D+ L++ W
Sbjct: 78 SFIVVKDSAEALGLLVSRW 96
>gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum E3 str. Alaska E43]
gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum E3 str. Alaska E43]
Length = 484
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
V G L+ EI+ + +DSR V D+F+C G TDGH Y+ +A + GA ++ +I++
Sbjct: 15 VQGSLDKEISSVNYDSRKVKKSDIFICIKGYATDGHKYIQKAIENGASVIIMQDDIEV 72
>gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Parabacteroides distasonis ATCC 8503]
gi|166224782|sp|A6LEU7.1|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Parabacteroides distasonis
ATCC 8503]
Length = 486
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
V+IT IQ DSR V+ G LFV G DGH Y+ A ++GAVA+V + E G
Sbjct: 20 NVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAVAIVCEETPSYLE--GRC 77
Query: 321 ALVIVEDT----NLVLPHW 335
+ ++V+D+ L++ W
Sbjct: 78 SFIVVKDSAEALGLLVSRW 96
>gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl tripeptide synthetase [Haliangium ochraceum DSM
14365]
gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
14365]
Length = 1035
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 240 MSLAELL-DESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M LA L+ D +++ V V GD +I ++ DSR V GDLFV G +TDGH YL
Sbjct: 1 MKLATLIQDLAELAAVRVVGDDARDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYLPAVI 60
Query: 299 KRGAVAVVASKEID 312
GA AVV + I+
Sbjct: 61 DAGAAAVVVERAIE 74
>gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides salanitronis DSM 18170]
gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
ligase [Bacteroides salanitronis DSM 18170]
Length = 484
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 240 MSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L E++ K V V+ + G + +ITGIQ DSR+V G LFV G +TDGH Y+ +A
Sbjct: 1 MKLEEII---KAVTVNELIGSADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAYIQKAI 57
Query: 299 KRGAVAVVASK 309
+ GA +V +
Sbjct: 58 ENGACGIVCEQ 68
>gi|336436843|ref|ZP_08616553.1| hypothetical protein HMPREF0988_02138 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336006662|gb|EGN36695.1| hypothetical protein HMPREF0988_02138 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 487
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L++LL+ E +VV G ++ IT + +DSR V G +FVC G +DGH + +E
Sbjct: 1 MRLSQLLERLEYEVVQ----GTEDIAITTLINDSRKVEPGSVFVCISGAVSDGHRFATEV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA A++ KE+++ G ++ VEDT L + G
Sbjct: 57 ADKGAAALIVEKEVEVP---GDVTVIRVEDTRYALALMSAAYFG 97
>gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase [Prevotella disiens FB035-09AN]
gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
ligase [Prevotella disiens FB035-09AN]
Length = 486
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL K P+ + GD E I GI DSR + LFV G +TDGH Y+ +A +
Sbjct: 1 MKLNELLKNVK--PIQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYIDKAIE 58
Query: 300 RGAVAVVASKEIDIEETL 317
GA A++ DI E L
Sbjct: 59 LGACAILVE---DIPEKL 73
>gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chromohalobacter salexigens DSM 3043]
gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chromohalobacter salexigens DSM 3043]
Length = 452
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
D++ +TG+ D+R VS GD+FV VG + DGH +L +A GAVA V S+ +
Sbjct: 19 DVDAPVTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAVAAVVSRRVASP---- 74
Query: 319 CKALVIVEDTNLVLPHWLPLFIGIRRRIWQ 348
A + V DT L L + RR W
Sbjct: 75 -LAQIEVADTRLA----LGILARAARRAWS 99
>gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
[Bacillus cereus E33L]
gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
[Bacillus cereus E33L]
Length = 147
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 7/62 (11%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDG-----HLYLSEADKRGAVAVVASKEID 312
GD+ V+ITG++ DSR ++ G+LF+C G DG H ++ +A K GAVA++ ++++
Sbjct: 17 GDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAVKNGAVALIVERDVN 74
Query: 313 IE 314
IE
Sbjct: 75 IE 76
>gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
ATCC 7061]
gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
ATCC 7061]
Length = 493
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
KM L ELL K + + +IT I+ DSR V G LFVC G DGH Y +A
Sbjct: 1 MKMKLQELLTYFKSENNELINE-NPDITSIEMDSREVKKGSLFVCIKGYTVDGHDYAEKA 59
Query: 298 DKRGAVAVVASKEIDIEE 315
K GA A+VA ++I E
Sbjct: 60 VKSGATAIVAEHPLNITE 77
>gi|440748227|ref|ZP_20927481.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mariniradius saccharolyticus AK6]
gi|436483431|gb|ELP39485.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Mariniradius saccharolyticus AK6]
Length = 487
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV S GD+EV ++ I DSR V +G +FV G + DGH ++S A ++GA A+V K
Sbjct: 10 KVSLTSTIGDMEVGVSDIVFDSRKVGSGSVFVAVAGTQVDGHSFISTALEKGAKAIVCEK 69
>gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 20_3]
gi|423339275|ref|ZP_17317016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides distasonis CL09T03C24]
gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 20_3]
gi|409231177|gb|EKN24034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides distasonis CL09T03C24]
Length = 486
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
V+IT IQ DSR V+ G LFV G DGH Y+ A ++GAVA+V + E G
Sbjct: 20 NVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAVAIVCEEAPSYLE--GRC 77
Query: 321 ALVIVEDT----NLVLPHW 335
+ ++V+D+ L++ W
Sbjct: 78 SFIVVKDSAEALGLLVSRW 96
>gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 3_1_19]
gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 3_1_19]
Length = 486
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
V+IT IQ DSR V+ G LFV G DGH Y+ A ++GAVA+V + E G
Sbjct: 20 NVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAVAIVCEEAPSYLE--GRC 77
Query: 321 ALVIVEDT----NLVLPHW 335
+ ++V+D+ L++ W
Sbjct: 78 SFIVVKDSAEALGLLVSRW 96
>gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_33B]
gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_33B]
Length = 486
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
V+IT IQ DSR V+ G LFV G DGH Y+ A ++GAVA+V + E G
Sbjct: 20 NVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAVAIVCEEAPSYLE--GRC 77
Query: 321 ALVIVEDT----NLVLPHW 335
+ ++V+D+ L++ W
Sbjct: 78 SFIVVKDSAEALGLLVSRW 96
>gi|435854483|ref|YP_007315802.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halobacteroides halobius
DSM 5150]
gi|433670894|gb|AGB41709.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halobacteroides halobius
DSM 5150]
Length = 489
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
G+L+++ITGI +DSR + G+LFV G + DGH +++ A GA AV+ K+I
Sbjct: 18 GNLDIDITGIAYDSRKIRPGELFVAITGFEVDGHDFINGAIANGAQAVLVEKDI 71
>gi|392398527|ref|YP_006435128.1| UDP-N-acetylmuramyl tripeptide synthetase [Flexibacter litoralis
DSM 6794]
gi|390529605|gb|AFM05335.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flexibacter litoralis
DSM 6794]
Length = 490
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M + ELL K S++GDLE+EI IQ DSR ++ D +V G DGH ++ +A +
Sbjct: 1 MEIIELLKNLK--TQSIHGDLEIEINQIQFDSRKIAKNDAYVALKGTVADGHQFIKQAIQ 58
Query: 300 RGAVAVVASK 309
GA +V K
Sbjct: 59 DGAKLIVCEK 68
>gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Parabacteroides sp. D13]
gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Parabacteroides sp. D13]
Length = 486
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
V+IT IQ DSR V+ G LFV G DGH Y+ A ++GAVA+V + E G
Sbjct: 20 NVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAVAIVCEEAPSYLE--GRC 77
Query: 321 ALVIVEDT----NLVLPHW 335
+ ++V+D+ L++ W
Sbjct: 78 SFIVVKDSAEALGLLVSRW 96
>gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides sp. 2_1_7]
gi|410104831|ref|ZP_11299742.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides sp. D25]
gi|409233406|gb|EKN26243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides sp. D25]
Length = 486
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
V+IT IQ DSR V+ G LFV G DGH Y+ A ++GAVA+V + E G
Sbjct: 20 NVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAVAIVCEEAPSYLE--GRC 77
Query: 321 ALVIVEDT----NLVLPHW 335
+ ++V+D+ L++ W
Sbjct: 78 SFIVVKDSAEALGLLVSRW 96
>gi|338536727|ref|YP_004670061.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myxococcus fulvus HW-1]
gi|337262823|gb|AEI68983.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myxococcus fulvus HW-1]
Length = 507
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
G V++TG+ DSR V GDLFV G K DG ++ EA RGAVAVV+ K +
Sbjct: 18 GRSAVDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSRGAVAVVSEKPV 71
>gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 491
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSV-YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L+EL++ +PV +EI I DSR V G LF+C G DGH + A+
Sbjct: 1 MKLSELME---AIPVYTGEASSAIEIDQIAQDSRKVKPGTLFICIDGELVDGHQFAKRAE 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K +D+
Sbjct: 58 ELGAVAIIAEKTVDV 72
>gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Heliobacterium modesticaldum Ice1]
gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
[Heliobacterium modesticaldum Ice1]
Length = 544
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+I+G+ +DSR V G LF C G+KTDGH + ++A RGA A+V + +D++
Sbjct: 57 KISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALVVERYVDVD 108
>gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
Length = 498
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M++ E+++ K+ ++YG L + I DSR + GD+FV G DGH Y+ + +
Sbjct: 1 MNILEVINNIKIK--TIYGKLPKSVNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIE 58
Query: 300 RGAVAVVASK--EIDIEETLGCKALVIVE 326
+GA V+AS+ + +IE C +V+ E
Sbjct: 59 QGAALVIASRYEDYNIEN---CAVIVVKE 84
>gi|408377859|ref|ZP_11175458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Agrobacterium albertimagni AOL15]
gi|407747973|gb|EKF59490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Agrobacterium albertimagni AOL15]
Length = 484
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L L E V+ G +VE+ G+ DSR V G +F G K DG Y+++A +
Sbjct: 1 MLLGGLAGEEFGEQVAASGAADVEVRGLSADSRRVEPGTVFFALSGSKADGSAYVAQAVE 60
Query: 300 RGAVAVVASKEID 312
+GAVAVVAS +D
Sbjct: 61 KGAVAVVASHALD 73
>gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 3_1_23]
gi|336417331|ref|ZP_08597655.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus 3_8_47FAA]
gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacteroides sp. 3_1_23]
gi|335936077|gb|EGM98017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus 3_8_47FAA]
Length = 482
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLY 293
M L ELL + PV V GD +EITG+ DSR+V AG LF+ G + DGH Y
Sbjct: 1 MLLNELL--KAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAY 52
>gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides ovatus SD CMC 3f]
gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides ovatus SD CMC 3f]
Length = 482
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLY 293
M L ELL + PV V GD +EITG+ DSR+V AG LF+ G + DGH Y
Sbjct: 1 MLLNELL--KAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAY 52
>gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
gi|423290576|ref|ZP_17269425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus CL02T12C04]
gi|423294148|ref|ZP_17272275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus CL03T12C18]
gi|156110610|gb|EDO12355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides ovatus ATCC 8483]
gi|392665229|gb|EIY58757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus CL02T12C04]
gi|392676644|gb|EIY70075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides ovatus CL03T12C18]
Length = 482
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLY 293
M L ELL + PV V GD +EITG+ DSR+V AG LF+ G + DGH Y
Sbjct: 1 MLLNELL--KAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAY 52
>gi|373853962|ref|ZP_09596760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Opitutaceae bacterium TAV5]
gi|391232001|ref|ZP_10268207.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutaceae bacterium
TAV1]
gi|372471829|gb|EHP31841.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Opitutaceae bacterium TAV5]
gi|391221662|gb|EIQ00083.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutaceae bacterium
TAV1]
Length = 549
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 238 FKMS--LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLS 295
F+M+ LA+L +V+ +V GDL I+G+ DSR V G++F G +TDG +++
Sbjct: 54 FQMAPQLADLFPAGEVL--AVRGDLHRPISGLVMDSRRVVPGNVFFALPGLRTDGAAFVN 111
Query: 296 EADKRGAVAVVASK 309
EA RGAVA+V ++
Sbjct: 112 EAVARGAVAIVGTQ 125
>gi|383111003|ref|ZP_09931821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. D2]
gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. D2]
Length = 482
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLY 293
M L ELL + PV V GD +EITG+ DSR+V AG LF+ G + DGH Y
Sbjct: 1 MLLNELL--KAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAY 52
>gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Myxococcus xanthus DK 1622]
gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Myxococcus xanthus DK 1622]
Length = 507
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
G V++TG+ DSR V GDLFV G K DG ++ EA RGAVAVV+ K +
Sbjct: 18 GRSAVDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSRGAVAVVSEKPV 71
>gi|422874782|ref|ZP_16921267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens F262]
gi|380304423|gb|EIA16712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens F262]
Length = 484
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ ++++++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVNVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|422413576|ref|ZP_16490535.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria innocua FSL S4-378]
gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria innocua FSL S4-378]
Length = 491
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSV-YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV +E+ I DSR V G LF+C G DGH + + A
Sbjct: 1 MKLKELM---QAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFANRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 QLGAVAIIAEKQLDV 72
>gi|422810114|ref|ZP_16858525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Listeria monocytogenes FSL J1-208]
gi|378751778|gb|EHY62366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Listeria monocytogenes FSL J1-208]
Length = 491
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A ++D+
Sbjct: 58 ELGAVAIIAENQLDV 72
>gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lysinibacillus fusiformis ZC1]
gi|424738780|ref|ZP_18167209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lysinibacillus fusiformis ZB2]
gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lysinibacillus fusiformis ZC1]
gi|422947264|gb|EKU41661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lysinibacillus fusiformis ZB2]
Length = 490
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYG-DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M LAELL + P SV G + EITG++ ++ V GD+F+ G+KT G ++ EA
Sbjct: 1 MQLAELLKDW---PCSVTGGSIRTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEAL 57
Query: 299 KRGAVAVVASKEIDI 313
RGA A+V+ + I +
Sbjct: 58 ARGAAAIVSEESISL 72
>gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 486
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L++ V+ +V GD +IT I ++S+ G +FVC G KTDGH Y++EA +
Sbjct: 1 MKLKDLIENIDVLETNV-GDFGKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQ 59
Query: 300 RGAVAVVASKEIDIEETLG 318
GA VV + D + G
Sbjct: 60 NGACLVVVDEFFDTSKIEG 78
>gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
14484]
gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
14484]
Length = 457
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
+E+ GI H+S+ V G +FV G TDGH ++ EA +RGA+ V K++ IE+
Sbjct: 1 MEVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIED----PR 56
Query: 322 LVIVEDTNLVLPHWLPLFIG 341
+V V DT +L F G
Sbjct: 57 IVKVSDTRKLLGELCHEFYG 76
>gi|423098937|ref|ZP_17086645.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria innocua ATCC 33091]
gi|370794764|gb|EHN62527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Listeria innocua ATCC 33091]
Length = 494
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 239 KMSLAELLDESKVVPVSV-YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+M L EL+ + +PV +E+ I DSR V G LF+C G DGH + A
Sbjct: 3 RMKLKELM---QAIPVYTGEASAAIEVNKIAQDSRKVQPGTLFICIDGEIVDGHQFADRA 59
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 60 VQLGAVAIIAEKQLDV 75
>gi|347549434|ref|YP_004855762.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
ligase [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346982505|emb|CBW86503.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
ligase [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 491
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV + +E++ I DSR V G LF+C G DGH + +A+
Sbjct: 1 MKLNELM---QAIPVFTGEASASIEVSQIAQDSRKVKPGTLFICIDGELVDGHQFARKAE 57
Query: 299 KRGAVAVVASKEIDI 313
GAVA++A K +D+
Sbjct: 58 ALGAVAIIAEKPVDV 72
>gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Bacillus sp. m3-13]
Length = 496
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 249 SKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
S V + VYGD + ++ I DSR V+ +FVC G DGH Y+S A ++GA +V
Sbjct: 8 SNVSTLKVYGDFPLSVSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVV 66
>gi|407461054|ref|YP_006738829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci WC]
gi|405787145|gb|AFS25889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci WC]
Length = 436
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I+G+ DSR V GDLF G+ TDGH +L +A + GAVA V SK+ ++ G + L
Sbjct: 13 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQ-GDSFGLE-L 70
Query: 323 VIVEDTNLVL 332
++V DT L
Sbjct: 71 IVVNDTTEAL 80
>gi|407458440|ref|YP_006736745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci WS/RT/E30]
gi|405785155|gb|AFS23901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci WS/RT/E30]
Length = 448
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I+G+ DSR V GDLF G+ TDGH +L +A + GAVA V SK+ ++ G + L
Sbjct: 25 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQ-GDSFGLE-L 82
Query: 323 VIVEDTN 329
++V DT
Sbjct: 83 IVVNDTT 89
>gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl tripeptide synthetase [Alkaliphilus oremlandii
OhILAs]
gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
OhILAs]
Length = 503
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL ++ + DLE I GI + S V G LFVC G KTDGH YL +A +
Sbjct: 2 MKLKELLSSIEIKNMDDERDLE--IYGISYHSGKVEKGHLFVCVRGYKTDGHQYLGKAAQ 59
Query: 300 RGAVAVV 306
GAVA +
Sbjct: 60 NGAVAAI 66
>gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sinorhizobium medicae WSM419]
gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae
WSM419]
Length = 486
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
+EI GI DSR V GDLFV G K DG Y+++A RGA AVVA E +
Sbjct: 25 IEIGGITADSRQVRPGDLFVAVAGAKADGSAYITDALSRGASAVVAGTSARAEAGI 80
>gi|375254187|ref|YP_005013354.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Tannerella forsythia ATCC 43037]
gi|363408276|gb|AEW21962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Tannerella forsythia ATCC 43037]
Length = 487
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 240 MSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L L+ K +P+ + GD EI+GI DSR +S G LFV G DGH Y+ +A
Sbjct: 1 MKLKTLI---KHLPIKRIQGDDVCEISGIHSDSRQISKGMLFVAVSGTTVDGHDYIGKAI 57
Query: 299 KRGAVAVVASKEIDIEETLG-CKA-LVIVEDT----NLVLPHW 335
++GA A+V K I E LG C V+V DT ++L W
Sbjct: 58 EKGAGAIVCEK---IPEQLGTCDVPFVVVPDTAQALGMLLDTW 97
>gi|383458064|ref|YP_005372053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Corallococcus coralloides DSM 2259]
gi|380733531|gb|AFE09533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Corallococcus coralloides DSM 2259]
Length = 512
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
G V++TG+ DSR V GDLF+ G K DG ++ EA RGAVAVV+ K+
Sbjct: 18 GRSAVDVTGVTQDSRRVKPGDLFIAVPGLKEDGAQFIGEAVSRGAVAVVSEKQ 70
>gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila psittaci 6BC]
gi|384450949|ref|YP_005663549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, putative
[Chlamydophila psittaci 6BC]
gi|384451939|ref|YP_005664537.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Chlamydophila psittaci 01DC11]
gi|384453892|ref|YP_005666488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Chlamydophila psittaci C19/98]
gi|406593813|ref|YP_006740992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci NJ1]
gi|407454431|ref|YP_006733539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci 84/55]
gi|407455700|ref|YP_006734591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci GR9]
gi|407457117|ref|YP_006735690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci VS225]
gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila psittaci 6BC]
gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, putative
[Chlamydophila psittaci 6BC]
gi|334692673|gb|AEG85892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Chlamydophila psittaci C19/98]
gi|334693649|gb|AEG86867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Chlamydophila psittaci 01DC11]
gi|405781190|gb|AFS19940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci 84/55]
gi|405782243|gb|AFS20992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci GR9]
gi|405784378|gb|AFS23125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci VS225]
gi|405789685|gb|AFS28427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci NJ1]
Length = 436
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I+G+ DSR V GDLF G+ TDGH +L +A + GAVA V SK+ ++ G + L
Sbjct: 13 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQ-GDSFGLE-L 70
Query: 323 VIVEDTNLVL 332
++V DT L
Sbjct: 71 IVVNDTTEAL 80
>gi|405354266|ref|ZP_11023646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chondromyces apiculatus DSM 436]
gi|397092509|gb|EJJ23267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Myxococcus sp. (contaminant ex DSM 436)]
Length = 507
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
G V++TG+ DSR V GDLFV G K DG ++ EA RGAVAVV+ K +
Sbjct: 18 GRSAVDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSRGAVAVVSEKPV 71
>gi|376260794|ref|YP_005147514.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium sp. BNL1100]
gi|373944788|gb|AEY65709.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. BNL1100]
Length = 487
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL+ + + ++ G L+VE+ I +DSR G LFVC G DGH Y+++A +
Sbjct: 1 MQLKELVRDLNIKEIN--GSLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYINDAIE 58
Query: 300 RGAVAVVASKEIDIEETL 317
G A + K +++ E +
Sbjct: 59 NGTKAFLVQKHVEVPEGI 76
>gi|442323135|ref|YP_007363156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Myxococcus stipitatus DSM 14675]
gi|441490777|gb|AGC47472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Myxococcus stipitatus DSM 14675]
Length = 507
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
G V++TG+ DSR V GDLF+ G K DG ++ EA RGAVAVV+ K +
Sbjct: 18 GRSAVDVTGVTQDSRRVKPGDLFIAIPGTKEDGAQFIGEAVSRGAVAVVSEKPV 71
>gi|424825482|ref|ZP_18250469.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila abortus LLG]
gi|333410581|gb|EGK69568.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila abortus LLG]
Length = 448
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I+G+ DSR V GDLF G+ TDGH +L +A + GAVA V SK+ ++ G + L
Sbjct: 25 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQ-GDSFGLE-L 82
Query: 323 VIVEDTN 329
++V DT
Sbjct: 83 IVVNDTT 89
>gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacteroides vulgatus ATCC 8482]
gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides vulgatus PC510]
gi|166224772|sp|A6L075.1|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacteroides vulgatus ATCC 8482]
gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides vulgatus PC510]
Length = 484
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD EI+GI DSR++ G +FV G +TDGH Y+ +A ++GA VV ++ E
Sbjct: 15 IIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVCE---NLPE 71
Query: 316 TLGCKALVI-VEDTNLVLPHWLPLFIG 341
TL I V DT V+ F G
Sbjct: 72 TLIENVTYIKVNDTEDVVGKLATTFYG 98
>gi|429740182|ref|ZP_19273887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella saccharolytica F0055]
gi|429154121|gb|EKX96872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella saccharolytica F0055]
Length = 484
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L + V P+ + G++E+E+TG+ DSR V G+LF+ G + DGH ++ +A +
Sbjct: 1 MVLNNILKD--VRPLHIIGNVEIEVTGVNIDSRRVKEGNLFIAMKGTQMDGHQFIGKAIE 58
Query: 300 RGAVAVVA 307
GA +V+
Sbjct: 59 LGARSVLC 66
>gi|407459682|ref|YP_006737785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci M56]
gi|405786250|gb|AFS24995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci M56]
Length = 448
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I+G+ DSR V GDLF G+ TDGH +L +A + GAVA V SK+ ++ G + L
Sbjct: 25 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQ-GDSFGLE-L 82
Query: 323 VIVEDTN 329
++V DT
Sbjct: 83 IVVNDTT 89
>gi|397730609|ref|ZP_10497367.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Rhodococcus sp. JVH1]
gi|396933509|gb|EJJ00661.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Rhodococcus sp. JVH1]
Length = 496
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 232 RIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGH 291
R PK + LD S ++ G E +TGI DSR+V AGD++ GR G
Sbjct: 7 RCTPPKLLREMVRRLDCSA----ALSGSGEAAVTGISQDSRLVRAGDVYAALPGRHRHGI 62
Query: 292 LYLSEADKRGAVAVVASKEIDIEETL 317
+ EA RGAVA+++ + D+ T+
Sbjct: 63 EFAGEAAARGAVAMLSDRGSDVLPTI 88
>gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydophila psittaci Cal10]
gi|384452913|ref|YP_005665510.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Chlamydophila psittaci 08DC60]
gi|384454871|ref|YP_005667466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Chlamydophila psittaci 02DC15]
gi|392377014|ref|YP_004064792.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila psittaci RD1]
gi|449071511|ref|YP_007438591.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila psittaci Mat116]
gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila psittaci RD1]
gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydophila psittaci Cal10]
gi|334694628|gb|AEG87845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Chlamydophila psittaci 02DC15]
gi|334695602|gb|AEG88818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Chlamydophila psittaci 08DC60]
gi|449040019|gb|AGE75443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila psittaci Mat116]
Length = 448
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I+G+ DSR V GDLF G+ TDGH +L +A + GAVA V SK+ ++ G + L
Sbjct: 25 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQ-GDSFGLE-L 82
Query: 323 VIVEDTN 329
++V DT
Sbjct: 83 IVVNDTT 89
>gi|373498371|ref|ZP_09588885.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fusobacterium sp. 12_1B]
gi|371961880|gb|EHO79496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fusobacterium sp. 12_1B]
Length = 483
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
E E TGI++DSR + GD+FV G +DGH Y+ +A K GA V+ SK+++
Sbjct: 19 EEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKKVE 70
>gi|357037246|ref|ZP_09099046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum gibsoniae DSM 7213]
gi|355361411|gb|EHG09166.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum gibsoniae DSM 7213]
Length = 498
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+ LL + VS+ DL+V G+ +DSR V +F+ G KTDGHLY+ A K
Sbjct: 1 MLLSNLLAGLPLFDVSLLKDLQVR--GVAYDSRQVERDFIFIAVKGFKTDGHLYVPSAVK 58
Query: 300 RGAVAVVASKEIDI 313
RGA AVV +++ +
Sbjct: 59 RGACAVVLQEKVPV 72
>gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 3_1_40A]
gi|345518943|ref|ZP_08798376.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 4_3_47FAA]
gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 4_3_47FAA]
gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides sp. 3_1_40A]
Length = 484
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD EI+GI DSR++ G +FV G +TDGH Y+ +A ++GA VV ++ E
Sbjct: 15 IIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVCE---NLPE 71
Query: 316 TLGCKALVI-VEDTNLVLPHWLPLFIG 341
TL I V DT V+ F G
Sbjct: 72 TLIENVTYIKVNDTEDVVGKLATTFYG 98
>gi|406592756|ref|YP_006739936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci CP3]
gi|406593990|ref|YP_006742029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci MN]
gi|410858797|ref|YP_006974737.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci 01DC12]
gi|405782422|gb|AFS21170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci MN]
gi|405788628|gb|AFS27371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia psittaci CP3]
gi|410811692|emb|CCO02347.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia psittaci 01DC12]
Length = 448
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I+G+ DSR V GDLF G+ TDGH +L +A + GAVA V SK+ ++ G + L
Sbjct: 25 KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQ-GDSFGLE-L 82
Query: 323 VIVEDTN 329
++V DT
Sbjct: 83 IVVSDTT 89
>gi|423312890|ref|ZP_17290826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides vulgatus CL09T03C04]
gi|392686921|gb|EIY80220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Bacteroides vulgatus CL09T03C04]
Length = 484
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD EI+GI DSR++ G +FV G +TDGH Y+ +A ++GA VV ++ E
Sbjct: 15 IIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVCE---NLPE 71
Query: 316 TLGCKALVI-VEDTNLVLPHWLPLFIG 341
TL I V DT V+ F G
Sbjct: 72 TLIENVTYIKVNDTEDVVGKLATTFYG 98
>gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
micronuciformis F0359]
gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
micronuciformis F0359]
Length = 498
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
++ EL E K + ++ G EITGI DSR + G LFVC G DG + +A ++
Sbjct: 3 TIKELCKEIKGI-YNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVEK 61
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GAVAV+ +K +D+ + + V D + L +P F
Sbjct: 62 GAVAVLTNKHLDLPLEI---TQITVPDIHAALEDIVPYF 97
>gi|291533201|emb|CBL06314.1| UDP-N-acetylmuramyl tripeptide synthase [Megamonas hypermegale
ART12/1]
Length = 104
Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
V V GD+ EI I HDSR V LFVC G + DG+ ++ +A + GA A++ K++++
Sbjct: 13 VEVKGDVNKEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIEAGACAIMTEKDVEV 72
>gi|392412981|ref|YP_006449588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomonile tiedjei
DSM 6799]
gi|390626117|gb|AFM27324.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomonile tiedjei
DSM 6799]
Length = 518
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 238 FKMS-LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
K+S +A L+ +++V GD VEIT + HDSR G LFV G DGH Y+
Sbjct: 1 MKLSEIAHALNNAQIV-----GDPSVEITAVHHDSRKSLPGSLFVAMRGEVVDGHNYIGA 55
Query: 297 ADKRGAVAVVASK 309
A K GA AV+A +
Sbjct: 56 ALKAGASAVMAER 68
>gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl tripeptide synthetase [Krokinobacter sp.
4H-3-7-5]
gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter sp.
4H-3-7-5]
Length = 487
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV +V G+ V IT I DSR VS D+FV G ++DGH Y+++A +GA+A++ +
Sbjct: 10 KVTLETVVGNTAVAITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAKAVNQGALAIIC-E 68
Query: 310 EIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
E+ E+ + V V DT+ L F G
Sbjct: 69 ELP-EQIVNGITYVKVADTSSALATIASNFYG 99
>gi|404367494|ref|ZP_10972857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fusobacterium ulcerans
ATCC 49185]
gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fusobacterium ulcerans
ATCC 49185]
Length = 483
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
E E TGI++DSR + GD+FV G +DGH Y+ +A K GA V+ SK+++
Sbjct: 19 EEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKKVE 70
>gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus atrophaeus 1942]
gi|419823983|ref|ZP_14347515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus atrophaeus C89]
gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus atrophaeus 1942]
gi|388471882|gb|EIM08673.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus atrophaeus C89]
Length = 490
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
+IT I+ DSR V G LFVC G DGH + +A + GA A+VA +E+D+
Sbjct: 23 DITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAERELDV 73
>gi|375085839|ref|ZP_09732461.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megamonas funiformis YIT
11815]
gi|374566324|gb|EHR37569.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megamonas funiformis YIT
11815]
Length = 496
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M++ +L+ S + V V GD+ EI I HDSR V LFVC G + DG+ ++ +A +
Sbjct: 1 MTIEQLV--SVLNNVEVKGDVNKEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIE 58
Query: 300 RGAVAVVASKEIDI 313
GA A++ K++++
Sbjct: 59 AGACAIMTEKDVEV 72
>gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Sphaerobacter thermophilus DSM 20745]
gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Sphaerobacter
thermophilus DSM 20745]
Length = 463
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
++L E+L+ S+ + DL + + HDSR + GDLFV VG + DGH +L+EA
Sbjct: 2 LTLREVLEGSRG-ALRGAADLGTPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFA 60
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
RGAVA + + G L++V DT
Sbjct: 61 RGAVAALVDRAHVPRLPEGLGPLIVVPDT 89
>gi|392957430|ref|ZP_10322953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus macauensis ZFHKF-1]
gi|391876393|gb|EIT84990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus macauensis ZFHKF-1]
Length = 489
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL+ ++ ++ + +++IT I+ DSR + G LF+C G DGH Y ++A +
Sbjct: 1 MRLKELLNH--LLHYTMNQEADIDITSIEMDSRAATPGSLFICIEGFTVDGHHYAAQAVE 58
Query: 300 RGAVAVVASK 309
GA A++A K
Sbjct: 59 NGASAILAQK 68
>gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella oralis ATCC 33269]
gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella oralis ATCC 33269]
Length = 483
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL K PV+V G+ ++I G+ DSR ++ G LF+ G + DGH ++ +A +
Sbjct: 1 MKLNELLKNIK--PVAVIGEQSIDIKGVNIDSRKIAEGHLFIAMKGTQVDGHRFIPKAIE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 QGAKAILC 66
>gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfomicrobium baculatum DSM 4028]
gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
baculatum DSM 4028]
Length = 452
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M+L ++ + + S+ D ++ + + DSR V GDLF C VG+K DGH + +A
Sbjct: 1 MNMTLTQI---ASAMASSIEQDHDLTVGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQA 57
Query: 298 DKRGAVAVVASKEIDIE 314
+ GA AVVAS +D++
Sbjct: 58 VENGACAVVASAPLDLD 74
>gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus clausii KSM-K16]
gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus clausii KSM-K16]
Length = 485
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
+EI ++ DSR+V G LF C G DGH + +A ++GAVAVVA + + ++
Sbjct: 21 IEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGAVAVVAERPLALD-----VP 75
Query: 322 LVIVEDTNLVLPHWLPLFIG 341
+VIV DT + F G
Sbjct: 76 VVIVRDTKRAMARLASHFYG 95
>gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sinorhizobium meliloti 1021]
gi|334316876|ref|YP_004549495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sinorhizobium meliloti AK83]
gi|384530065|ref|YP_005714153.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sinorhizobium meliloti BL225C]
gi|384535589|ref|YP_005719674.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Sinorhizobium meliloti SM11]
gi|407721213|ref|YP_006840875.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sinorhizobium meliloti Rm41]
gi|433613964|ref|YP_007190762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
GR4]
gi|21362707|sp|Q92NL6.1|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Sinorhizobium meliloti 1021]
gi|333812241|gb|AEG04910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sinorhizobium meliloti BL225C]
gi|334095870|gb|AEG53881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sinorhizobium meliloti AK83]
gi|336032481|gb|AEH78413.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Sinorhizobium meliloti SM11]
gi|407319445|emb|CCM68049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sinorhizobium meliloti Rm41]
gi|429552154|gb|AGA07163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
GR4]
Length = 486
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+EI GI DSR V GDLFV G K DG Y+++A RGA AVVA
Sbjct: 25 IEIGGITADSRQVKPGDLFVAVAGSKADGAAYIADALSRGASAVVA 70
>gi|339626480|ref|YP_004718123.1| UDP-N-acetylmuramyl tripeptide synthetase [Sulfobacillus
acidophilus TPY]
gi|379008486|ref|YP_005257937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sulfobacillus acidophilus DSM 10332]
gi|339284269|gb|AEJ38380.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfobacillus
acidophilus TPY]
gi|361054748|gb|AEW06265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sulfobacillus acidophilus DSM 10332]
Length = 492
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
+ITG+ DSR+V G++FV G DGH ++++A +RGAVAVV K +++
Sbjct: 17 DITGVAIDSRMVQPGNIFVAIPGAVADGHQFIADAIQRGAVAVVGEKPLNL 67
>gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gramella forsetii KT0803]
gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gramella forsetii KT0803]
Length = 488
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV +V GD V I I DSR V D+F+ G +DGH Y+ A+ +GA+A+V K
Sbjct: 10 KVNMKAVTGDTGVTINNIHFDSRKVQLNDVFIAIRGSISDGHDYIKNAENQGALAIVCEK 69
Query: 310 EIDIEETLGCKALVIVEDTNLVLPH 334
D E + + VEDT L +
Sbjct: 70 IPD--EVINGVTYIEVEDTKRALAY 92
>gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens SM101]
gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens SM101]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dictyoglomus thermophilum H-6-12]
gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dictyoglomus thermophilum H-6-12]
Length = 491
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L E+++ K + V GD+++ ITGI DSR V G++F G K DG Y+S+A +G
Sbjct: 4 LKEIVEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYISDAISKG 63
Query: 302 AVAVVASKEID 312
A AV E++
Sbjct: 64 ASAVFLEGEVN 74
>gi|339480714|ref|ZP_08656373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc pseudomesenteroides KCTC 3652]
Length = 442
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 257 YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
+GD V ++G+ DSR V GDLFV V + DGH Y+ +A GAVAV+A + I T
Sbjct: 18 FGD--VVVSGVSFDSRQVKPGDLFVALVAQN-DGHDYIEQALNHGAVAVLADNQHQIPST 74
Query: 317 LGCKALVIVEDT 328
+ A VIV DT
Sbjct: 75 I---AAVIVPDT 83
>gi|347750612|ref|YP_004858177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
gi|347583130|gb|AEO99396.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
Length = 485
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
EIT + D+R+V+ LF+C G DGH + +A KRGA A++A K +D++ +
Sbjct: 21 EITELVQDNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILAEKPVDVD-----IPV 75
Query: 323 VIVEDTNLVLPHWLPLFIG 341
+IV +T + F G
Sbjct: 76 IIVRNTKRAMALLADRFYG 94
>gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens ATCC 13124]
gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens ATCC 13124]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens B str. ATCC 3626]
gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens B str. ATCC 3626]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|336397533|ref|ZP_08578333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella multisaccharivorax DSM 17128]
gi|336067269|gb|EGN55903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella multisaccharivorax DSM 17128]
Length = 483
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL K P+ + G +V+ITG+ DSR + G LFV G +TDGH ++ +A +
Sbjct: 1 MKLQELLKNIK--PLRIEGSTDVDITGVNIDSRKIGDGHLFVAMKGTQTDGHKFIPKALE 58
Query: 300 RGAVAVVA 307
GA AV+
Sbjct: 59 LGAKAVLC 66
>gi|340351808|ref|ZP_08674709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella pallens ATCC 700821]
gi|339616669|gb|EGQ21311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella pallens ATCC 700821]
Length = 486
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K P+ + GD E ITGI DSR + +FV G +TDGH ++++A +
Sbjct: 1 MKLNDLLKYVK--PLKIIGDTEKNITGINIDSRKIEGNQMFVAIKGTQTDGHKFINKAIE 58
Query: 300 RGAVAVV 306
GA A++
Sbjct: 59 LGATAIL 65
>gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens D str. JGS1721]
gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens D str. JGS1721]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|334134006|ref|ZP_08507541.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paenibacillus sp. HGF7]
gi|333608514|gb|EGL19811.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Paenibacillus sp. HGF7]
Length = 495
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL S+++ + G+ EI+GI DSR V GDLFVC G +DGH + +A +
Sbjct: 1 MELKEL--ASQLLICQLIGEETTEISGIATDSRQVRPGDLFVCVPGFVSDGHDFAPKAIE 58
Query: 300 RGAVAVVASKEIDIE 314
GA A+V ++++++
Sbjct: 59 LGAAALVTERKLELD 73
>gi|403234895|ref|ZP_10913481.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. 10403023]
Length = 487
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
IT ++ DSR V G LF C G DGHL+ +A+ +GAVA++A K++ +
Sbjct: 23 ITSLEMDSREVEEGSLFFCIEGSTFDGHLFAKQAEVKGAVAIIAEKDVQV 72
>gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens NCTC 8239]
gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens C str. JGS1495]
gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens C str. JGS1495]
gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens NCTC 8239]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|445114756|ref|ZP_21378034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella nigrescens
F0103]
gi|444840628|gb|ELX67656.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella nigrescens
F0103]
Length = 489
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K P+S+ G+ +++I GI DSR + G +FV G +TDGH ++ +A +
Sbjct: 1 MRLNDLLKYVK--PLSITGNTDIDIKGINIDSRKIEQGQMFVAIKGTQTDGHKFIKKAIE 58
Query: 300 RGAVAVV 306
GA A++
Sbjct: 59 LGATAIL 65
>gi|340350596|ref|ZP_08673576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella nigrescens ATCC 33563]
gi|339607740|gb|EGQ12669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Prevotella nigrescens ATCC 33563]
Length = 489
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K P+S+ G+ +++I GI DSR + G +FV G +TDGH ++ +A +
Sbjct: 1 MRLNDLLKYVK--PLSITGNTDIDIKGINIDSRKIEQGQMFVAIKGTQTDGHKFIKKAIE 58
Query: 300 RGAVAVV 306
GA A++
Sbjct: 59 LGATAIL 65
>gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens E str. JGS1987]
gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens E str. JGS1987]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens str. 13]
gi|21362685|sp|Q8XJ99.1|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Clostridium perfringens str. 13]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella morbillorum
M424]
gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella morbillorum
M424]
Length = 504
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M++ ++++ K+ ++YG L ++ I DSR ++ GD+FV G DGH Y+ +
Sbjct: 7 MNILDIIENIKIK--TIYGSLPTKVNNISQDSRKITKGDVFVAIKGYTVDGHNYIEKVIA 64
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVE 326
+GA V+AS+ D C +V+ E
Sbjct: 65 QGAALVIASRYEDY-NVQDCAVVVVKE 90
>gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
ferrooxidans DSM 10331]
Length = 499
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+L L++ +++V GD +TGI D R + AGDLF GR DG + +EA +R
Sbjct: 33 ALGALVEHARIV-----GDRATSVTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRR 87
Query: 301 GAVAVVASKE 310
GAVAV+ + +
Sbjct: 88 GAVAVLTAGQ 97
>gi|407477857|ref|YP_006791734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Exiguobacterium antarcticum B7]
gi|407061936|gb|AFS71126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Exiguobacterium antarcticum B7]
Length = 540
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+T I+ DSR V+ G LF+C G DGH Y EA + GAVA++A + ++
Sbjct: 25 VTSIETDSRQVTTGSLFICVRGYTVDGHQYAREATENGAVAILAEEPLE 73
>gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens CPE str. F4969]
gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium perfringens CPE str. F4969]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Synechococcus sp. PCC 7335]
gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Synechococcus sp. PCC 7335]
Length = 455
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEI----TGIQHDSRVVSAGDLFVCCVGRKTDGHLY 293
F SL E+ +KV+ V+ +E+E TG+ D+R V AG+LFV VG DGH +
Sbjct: 4 FSASLGEI---AKVLGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEF 60
Query: 294 LSEADKRGAVAVVASKEI 311
+A ++GA+A + K +
Sbjct: 61 AKQAVEKGAIATIVKKGV 78
>gi|423132326|ref|ZP_17119976.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 12901]
gi|371639825|gb|EHO05438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Myroides odoratimimus
CCUG 12901]
Length = 473
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK-EIDIEET 316
GDLE+ I I DSR VS LFV G DGH Y+++A K GA AV+ K +DI +
Sbjct: 7 GDLELSIAKIAFDSREVSKETLFVAIPGTVVDGHDYITQAIKDGASAVICEKLPVDIAQG 66
Query: 317 LGCKALVIVEDTNLVLP 333
+ ++VED+N L
Sbjct: 67 V---TYILVEDSNKALA 80
>gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Candidatus Blochmannia vafer str. BVAF]
gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Candidatus Blochmannia vafer str. BVAF]
Length = 515
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
IT +Q DSR V+ G+LF+ G KTDG LY+ A K GAVAV+
Sbjct: 35 ITALQLDSRNVTVGNLFIAIKGHKTDGRLYIKHAIKNGAVAVL 77
>gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991764|gb|EEC57768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [[Bacteroides] pectinophilus ATCC 43243]
Length = 502
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M ++ +++ K+ + G + ++TG+ DSR V+AG FVC +G ++GH Y+ +
Sbjct: 5 MKISNIIE--KINASVISGSCDADVTGLTSDSRKVTAGGAFVCIMGAVSNGHTYIQDVIG 62
Query: 300 RGAVAVVASKEID 312
RGA +V S + D
Sbjct: 63 RGAGLIVVSSKYD 75
>gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeria innocua Clip11262]
gi|21362704|sp|Q929X9.1|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262]
Length = 491
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSV-YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV +E+ I DSR V G LF+C G DGH + A
Sbjct: 1 MKLKELM---QAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 QLGAVAIIAEKQLDV 72
>gi|374602396|ref|ZP_09675389.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
dendritiformis C454]
gi|374391998|gb|EHQ63327.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
dendritiformis C454]
Length = 498
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
+M L+E +++ V GD +TG+ DSR V GDLF C G DGH Y +A
Sbjct: 3 EMRLSEAC--KRMLNVKCTGDEATAVTGLAVDSRHVRPGDLFFCISGTADDGHRYAEQAV 60
Query: 299 KRGAVAVVASKEI 311
+GA A+V +E+
Sbjct: 61 DKGAAALVVEREL 73
>gi|384097570|ref|ZP_09998691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Imtechella halotolerans K1]
gi|383837538|gb|EID76938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Imtechella halotolerans K1]
Length = 486
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL KV +V G +V++ I DSR V+ D+FV G TDGH Y+ +A
Sbjct: 1 MQLKDLL--YKVTINAVSGSTQVDVIDIHFDSRKVALNDVFVAIRGTVTDGHKYIDKAVG 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA+A+V E + + V+VEDT L F G
Sbjct: 59 QGAIAIVC--ESMPKNIVNGVTYVLVEDTMSALARIATNFYG 98
>gi|422416567|ref|ZP_16493524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria innocua FSL J1-023]
gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Listeria innocua FSL J1-023]
Length = 491
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSV-YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV +E+ I DSR V G LF+C G DGH + A
Sbjct: 1 MKLKELM---QAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 QLGAVAIIAEKQLDV 72
>gi|336432660|ref|ZP_08612491.1| hypothetical protein HMPREF0991_01610 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336017942|gb|EGN47695.1| hypothetical protein HMPREF0991_01610 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 491
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L +LL+ E +VV G ++EIT + +DSR V G +FVC G +DGH Y+++
Sbjct: 1 MILKQLLERLEYEVVQ----GSDKIEITTLINDSRKVEEGSVFVCISGAVSDGHQYVADV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDT 328
K+GA AV+ + D+E G ++ VEDT
Sbjct: 57 AKKGAKAVIVQQ--DVEAPAG-MTVIRVEDT 84
>gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
gi|153793974|gb|EDN76394.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Ruminococcus gnavus ATCC 29149]
Length = 491
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L +LL+ E +VV G ++EIT + +DSR V G +FVC G +DGH Y+++
Sbjct: 1 MILKQLLERLEYEVVQ----GSDKIEITTLINDSRKVEEGSVFVCISGAVSDGHQYVADV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDT 328
K+GA AV+ + D+E G ++ VEDT
Sbjct: 57 AKKGAKAVIVQQ--DVEAPAG-MTVIRVEDT 84
>gi|374855639|dbj|BAL58494.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured candidate
division OP1 bacterium]
Length = 470
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 32/55 (58%)
Query: 255 SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+V G L V IT I DSR V G LFV G K DGH Y+ A +GAVAVV +
Sbjct: 8 AVSGRLSVRITQITDDSREVGPGALFVAIPGTKHDGHHYIGTALAKGAVAVVGQR 62
>gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella buccalis ATCC 35310]
gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella buccalis ATCC 35310]
Length = 482
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+ +EL+ K +V G+ V ITG++ DSR V G+LFV G + DGH Y+ +A +
Sbjct: 1 MTFSELIKGIKTS--AVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIE 58
Query: 300 RGAVAVVA 307
GA A++
Sbjct: 59 LGAAAILC 66
>gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. m3-13]
Length = 418
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
EI+ I DSR V+ G LF C G DGH + EA +GAVA+++ K +D+
Sbjct: 22 EISSIVMDSRKVNEGSLFFCIKGYTVDGHQFAQEAVNKGAVAIISEKPLDV 72
>gi|359144765|ref|ZP_09178648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
sp. S4]
Length = 474
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+SLAE+ P + DL+ ++TG + DSR+ + G LF G + DGH Y +
Sbjct: 2 IALSLAEISSIVGGQPADIP-DLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAAT 60
Query: 297 ADKRGAVAVVASKEI--------DIEETLGCKALVIVE 326
A + GAVAV+A++ + D+E LG A +VE
Sbjct: 61 AVETGAVAVLATRPVGVPALVVDDVERALGALARAVVE 98
>gi|410030911|ref|ZP_11280741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Marinilabilia sp. AK2]
Length = 487
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
KV + GD+EVE+ I DSR VS G FV G +TDGH Y++ A +GA V+
Sbjct: 10 KVSLTATIGDMEVEVKEIVFDSRKVSKGTAFVAVRGTQTDGHAYINAALDQGAACVIC 67
>gi|421740667|ref|ZP_16178909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Streptomyces sp. SM8]
gi|406690921|gb|EKC94700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Streptomyces sp. SM8]
Length = 474
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+SLAE+ P + DL+ ++TG + DSR+ + G LF G + DGH Y +
Sbjct: 2 IALSLAEISSIVGGQPADIP-DLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAAT 60
Query: 297 ADKRGAVAVVASKEI--------DIEETLGCKALVIVE 326
A + GAVAV+A++ + D+E LG A +VE
Sbjct: 61 AVETGAVAVLATRPVGVPALVVDDVERALGALARAVVE 98
>gi|419966093|ref|ZP_14482026.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
[Rhodococcus opacus M213]
gi|414568486|gb|EKT79246.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
[Rhodococcus opacus M213]
Length = 497
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 232 RIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGH 291
R PK + L S ++ G E +TGI DSR+V AGD++ GR G
Sbjct: 7 RCTPPKLLREMVRRLGRSA----TLRGSGEAAVTGINQDSRLVRAGDVYAALPGRHRHGI 62
Query: 292 LYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
+ EA RGAVA+++ + D+ T V+V+D VL
Sbjct: 63 EFAVEAAARGAVAMLSDRGSDVLPT------VVVDDPRRVL 97
>gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Ochrobactrum anthropi ATCC 49188]
gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi
ATCC 49188]
Length = 490
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
EVEITG+ DSR V G LF G K DG ++++A KRGA A++A K+ I + G
Sbjct: 21 EVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIIAGKDTAIADA-GVP 79
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
L V+D L L F G
Sbjct: 80 VL-HVDDPRLALAVAAAQFYG 99
>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 442
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
GD + ITG DSR V GD+FVC G KTDGH ++ EA GA + +++I++
Sbjct: 2 GDPDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIEL 57
>gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate-D-alanyl-D-alanine ligase
[Streptomyces albus J1074]
gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate-D-alanyl-D-alanine ligase
[Streptomyces albus J1074]
Length = 474
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+SLAE+ P + DL+ ++TG + DSR+ + G LF G + DGH Y +
Sbjct: 2 IALSLAEISSIVGGQPADIP-DLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAAT 60
Query: 297 ADKRGAVAVVASKEI--------DIEETLGCKALVIVE 326
A + GAVAV+A++ + D+E LG A +VE
Sbjct: 61 AVETGAVAVLATRPVGVPALVVDDVERALGALARAVVE 98
>gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl tripeptide synthetase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 512
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 240 MSLAELLDESKVVP-----VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYL 294
M L LLD + P +S ++VE+ + DSR VS GD+F C G +TDGH +
Sbjct: 1 MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60
Query: 295 SEADKRGAVAVVASKEI 311
+A RGAVA+ ++ +
Sbjct: 61 RDAVDRGAVALCVARPL 77
>gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bulleidia extructa W1219]
gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bulleidia extructa W1219]
Length = 491
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +LLD + + G +E V I + DSR + LF C G DGH + A+
Sbjct: 1 MKLVDLLDVKNQIYHLIQGTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQFAKMAE 60
Query: 299 KRGAVAVVASKEIDIE 314
++GAV +VASK +D++
Sbjct: 61 EKGAVCLVASKHVDVK 76
>gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus
Kuenenia stuttgartiensis]
Length = 489
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+ G+ HDSR V G +FV G K+DGH ++S A ++GA+AVVA K +D
Sbjct: 23 VLGLTHDSRKVKEGYIFVAIKGYKSDGHDFISMAIEKGAIAVVAEKGVD 71
>gi|390959241|ref|YP_006422998.1| UDP-N-acetylmuramyl tripeptide synthetase [Terriglobus roseus DSM
18391]
gi|390414159|gb|AFL89663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus roseus DSM
18391]
Length = 498
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 252 VPVSVYGDL-EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
VPV GD EI G+++DSR V AG LFV G TDG+ Y+ A GAVA+V
Sbjct: 10 VPVLAVGDAARAEILGVEYDSRAVRAGSLFVAMRGETTDGNRYVRAALDAGAVAIV 65
>gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Odoribacter splanchnicus DSM 20712]
gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Odoribacter splanchnicus DSM 20712]
Length = 487
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L ELL+ V VYGD + EI I DSR + GD+F+ G DGH ++ +A RG
Sbjct: 4 LKELLNGVNVG--KVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTRG 61
Query: 302 AVAVVASK 309
AVAVV +
Sbjct: 62 AVAVVCEQ 69
>gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
LMG 3301]
gi|444310523|ref|ZP_21146144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Ochrobactrum intermedium M86]
gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
LMG 3301]
gi|443486085|gb|ELT48866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Ochrobactrum intermedium M86]
Length = 490
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
EVEITG+ DSR V G LF G K DG ++++A KRGA A+VA K+ I + G
Sbjct: 21 EVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIVAGKDTVIADA-GVP 79
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
L V+D L L F G
Sbjct: 80 VL-HVDDPRLALAVAAAQFYG 99
>gi|399517900|ref|ZP_10759435.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc pseudomesenteroides 4882]
gi|398647211|emb|CCJ67462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc pseudomesenteroides 4882]
Length = 442
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V + G+ DSR V GDLFV V +K DGH Y+ +A GAVAV+A + I T+
Sbjct: 20 DVIVRGVSFDSRQVKPGDLFVAMVAQK-DGHDYIEQAFNNGAVAVLADNQHQIPSTI--- 75
Query: 321 ALVIVEDT 328
A VIV DT
Sbjct: 76 AAVIVPDT 83
>gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
Length = 480
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
V ITG+ DSR V G+++ C G DGH ++ A K GAV +V SKE+ + A
Sbjct: 13 VNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGAVCIVHSKEL---LNMASGA 69
Query: 322 LVI-VEDTN 329
+ I VED N
Sbjct: 70 VYIRVEDVN 78
>gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
15897]
gi|224524377|gb|EEF93482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Catenibacterium mitsuokai DSM 15897]
Length = 489
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ +V+IT + +DSR V G LFVC VG + H ++ + ++GA A+V S+++ ++E
Sbjct: 14 IIGNKDVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFIDQVIEKGAHAIVISQDVSLKE 73
Query: 316 TLGCKALVIVEDTNLVLP 333
+ + V+DT + L
Sbjct: 74 GM---TYIRVKDTRIALA 88
>gi|407776389|ref|ZP_11123662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nitratireductor pacificus pht-3B]
gi|407301680|gb|EKF20799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nitratireductor pacificus pht-3B]
Length = 484
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
A++L ++ VP V EI+GI DSR V G LF G + DG + S+A RG
Sbjct: 6 FADILPQAGPVPAGV------EISGISSDSRRVERGHLFFALAGTRADGAAFASDAVSRG 59
Query: 302 AVAVVASK 309
AVAVVA K
Sbjct: 60 AVAVVAPK 67
>gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. B14905]
gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. B14905]
Length = 513
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYG-DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
+ LAELL + P SV G + EITG++ ++ V GD+F+ G+KT G ++ EA
Sbjct: 25 LQLAELLKDW---PCSVTGGSIRTEITGVEDYAQAVRPGDIFIVRKGKKTSGSRFVKEAL 81
Query: 299 KRGAVAVVASKEIDI 313
RGA A+V+ + I +
Sbjct: 82 ARGAAAIVSEESISL 96
>gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium
cellulolyticum H10]
gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
cellulolyticum H10]
Length = 486
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L EL+ + ++ G+L+VE+ I +DSR G LFVC G DGH Y+++A +
Sbjct: 1 MKLRELVMNLNIKAIN--GNLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYINDAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
G A + K + + E + + ++DT L F G
Sbjct: 59 NGTKAFLVQKHVVVPEGI---TTIEIDDTRFGLAAVSDAFFG 97
>gi|410455424|ref|ZP_11309304.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus bataviensis LMG 21833]
gi|409929251|gb|EKN66336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus bataviensis LMG 21833]
Length = 486
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL+ + P+ Y + EIT I++D+R V G LF+C G DGH + + A
Sbjct: 1 MKLQKLLE--YLHPIHPYKGEDPEITSIENDNRKVQKGSLFICINGYTVDGHDFAASAVN 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTN 329
GA A++A + +D++ +++V DT
Sbjct: 59 SGAAAILAERPLDLD-----VPVIVVNDTT 83
>gi|340758194|ref|ZP_08694785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
[Fusobacterium varium ATCC 27725]
gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
[Fusobacterium varium ATCC 27725]
Length = 483
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
E E TGI++DSR + G++FV G +DGH Y+ +A K GA ++ SK+I+
Sbjct: 19 EEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKKIE 70
>gi|373116175|ref|ZP_09530331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371669639|gb|EHO34738.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 451
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELLD + V +VE +GI D+R ++ G LFV G KTDGH Y+ +A +
Sbjct: 1 MKLNELLDGVALAARHVQ---DVECSGICCDTRDMTPGCLFVALPGYKTDGHRYIRQALE 57
Query: 300 RGAVAVVASK 309
RGA AV+ +
Sbjct: 58 RGAAAVLCQR 67
>gi|363889494|ref|ZP_09316854.1| hypothetical protein HMPREF9628_00181 [Eubacteriaceae bacterium
CM5]
gi|361966561|gb|EHL19460.1| hypothetical protein HMPREF9628_00181 [Eubacteriaceae bacterium
CM5]
Length = 486
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L +L+ K+ ++ G +V+I I ++S+ +FV +G DGH Y+ +A
Sbjct: 1 MNLQKLITTLKIKNIT--GKTDVDIQDIVYNSKFAKENTVFVALIGMSVDGHEYIQDAYD 58
Query: 300 RGAVAVVASKEIDIEETLGCK-ALVIVEDTNLVLPHWLPLF 339
+G + SKE DI+ GC L+ VEDT L + +F
Sbjct: 59 KGVRVFIVSKETDIK---GCDITLITVEDTRDALANISDVF 96
>gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Desulfohalobium retbaense DSM 5692]
gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Desulfohalobium
retbaense DSM 5692]
Length = 460
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVE---ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYL 294
+++L E+ + + V GD + + + IQ DSR V GDLFVC G + DGH ++
Sbjct: 1 MQLTLHEIANATGAV-----GDFDPQTPPVCRIQTDSRAVQPGDLFVCLSGERFDGHNFV 55
Query: 295 SEADKRGAVAVVASKEI-DIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRR 345
EA +GA A++A + + D+ + +++V+DT H L G RR
Sbjct: 56 DEAASKGASAIIAQQPLFDLSAGI---PVLLVQDTL----HALGQLAGYWRR 100
>gi|389573367|ref|ZP_10163442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. M 2-6]
gi|388427064|gb|EIL84874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. M 2-6]
Length = 491
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
EIT I+ DSR V G LFVC G DGH Y +A K GA A+VA
Sbjct: 23 EITSIEMDSREVKKGSLFVCIKGYTVDGHDYAEKAVKNGAAAIVA 67
>gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Clostridium botulinum BKT015925]
gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Clostridium botulinum BKT015925]
Length = 483
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L E ++ G L++++ +++DSR + +GD+FV G DGH ++ +A +
Sbjct: 1 MKLIQILKELDYTNLN--GTLDLDVNKVEYDSRKILSGDVFVAIEGFNVDGHKFIPKAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GA +V SK+ +I E+ + VE+T L F G
Sbjct: 59 NGAKVIVCSKDTEINESC---TYIKVENTRKALAIIASNFYG 97
>gi|387129839|ref|YP_006292729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylophaga sp. JAM7]
gi|386271128|gb|AFJ02042.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Methylophaga
sp. JAM7]
Length = 451
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
++ +TG DSR V GDLF+ G + DGH YL+ A + GAVA + S++++
Sbjct: 22 DINVTGTAIDSRKVKKGDLFIALAGEQVDGHDYLASAREAGAVAALVSRQVE 73
>gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
15053]
gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
15053]
Length = 490
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L +LL+ E +VV G + E+T + +DSR V G FVC G +DGH Y+ E
Sbjct: 1 MRLTDLLERLEYEVVQ----GSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYVKEV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
++GA AV+ K+++ + + ++ V+DT L + G
Sbjct: 57 AEKGAKAVIVEKQVEAPDGV---TVIHVDDTRYALALMSAAYFG 97
>gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
17361]
gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
17361]
Length = 484
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L ELL K +++ GD +V+ITG+ DSR +S G FV G + DGH ++ +A +
Sbjct: 1 MNLQELLKSIK--SLAIIGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFIPKAIE 58
Query: 300 RGAVAVVA 307
GA A++
Sbjct: 59 LGAKAILC 66
>gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Carnobacterium sp. AT7]
gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
[Carnobacterium sp. AT7]
Length = 492
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M EL+ K S +EIT + D+R V G LFVC +G DGH EA +
Sbjct: 1 MKAIELIKPLKTTNFSKDFSENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQ 60
Query: 300 RGAVAVVASKEIDI 313
+GA VVAS+ I++
Sbjct: 61 KGATLVVASEPIEV 74
>gi|381183156|ref|ZP_09891915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeriaceae bacterium TTU M1-001]
gi|380316941|gb|EIA20301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Listeriaceae bacterium TTU M1-001]
Length = 74
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L ELL +V+P+ DL+++I I DSR V+ G LF+C G DGH + A+
Sbjct: 1 MKLKELL---RVLPLCHTDADLDMDIKKIAQDSREVTPGTLFICIDGEIVDGHKFAQVAE 57
Query: 299 KRGAVAVVASKEIDI 313
+ GA ++A K +D+
Sbjct: 58 QNGASVILAEKPVDV 72
>gi|340749658|ref|ZP_08686511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium mortiferum ATCC 9817]
gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium mortiferum ATCC 9817]
Length = 481
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
G E+E G+++DSR + GD+FV G +DGH Y+ +A + GA V+ SK+++
Sbjct: 16 GKTEIEFKGMEYDSRKIKDGDIFVALEGSISDGHKYIKQAIENGAKGVLVSKKVE 70
>gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Chlamydia muridarum MopnTet14]
Length = 450
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V +++
Sbjct: 24 KVTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARD 71
>gi|365845634|ref|ZP_09386394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Flavonifractor plautii ATCC
29863]
gi|364559647|gb|EHM37618.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Flavonifractor plautii ATCC
29863]
Length = 478
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELLD + V +VE +GI D+R ++ G LFV G KTDGH Y+ +A +
Sbjct: 1 MKLNELLDGVALAARHVQ---DVECSGICCDTRDMTPGCLFVALPGYKTDGHRYIRQALE 57
Query: 300 RGAVAVVASK 309
RGA AV+ +
Sbjct: 58 RGAAAVLCQR 67
>gi|421860351|ref|ZP_16292482.1| UDP-N-acetylmuramyl tripeptide synthase [Paenibacillus popilliae
ATCC 14706]
gi|410830099|dbj|GAC42919.1| UDP-N-acetylmuramyl tripeptide synthase [Paenibacillus popilliae
ATCC 14706]
Length = 498
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
+M L+E +++ V GD +TG+ DSR V GDLF C G DGH Y +A
Sbjct: 3 EMRLSEAC--KRMLNVKCTGDEATVVTGLAVDSRHVRPGDLFFCISGTADDGHRYAEQAV 60
Query: 299 KRGAVAVVASKEI 311
++GA A+V +E+
Sbjct: 61 EQGAAALVVEREL 73
>gi|390934665|ref|YP_006392170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570166|gb|AFK86571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 484
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L + K V G+++V++ GI +DSR G LFV G K DG Y+++A +
Sbjct: 1 MRLVDILKDVKYTIVK--GNIDVDVKGICYDSRNSKEGSLFVAIKGFKFDGADYINDAVE 58
Query: 300 RGAVAVVASKEIDIEE 315
+GA+AV E+ I++
Sbjct: 59 KGAIAVAVEHEVSIDK 74
>gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus pumilus SAFR-032]
gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus pumilus SAFR-032]
Length = 493
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
KM L ELL K + + +IT I+ DSR V G LFVC G DGH Y +A
Sbjct: 1 MKMKLQELLTYFKSENNELINE-NPDITSIEMDSREVKEGSLFVCIKGYTVDGHDYAEKA 59
Query: 298 DKRGAVAVVASKEIDI 313
K GA A+VA ++I
Sbjct: 60 VKSGAAAIVAEHPLNI 75
>gi|339484866|ref|YP_004696652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
sp. Is79A3]
gi|338807011|gb|AEJ03253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
sp. Is79A3]
Length = 467
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V TG+ DSR + GDLFV G K DG ++ A ++GAVA + + +D +
Sbjct: 19 DVLFTGVSTDSRTLREGDLFVALTGEKFDGSRFVDSAAEKGAVAAMIQQAVDGNDLPAGL 78
Query: 321 ALVIVEDTNLVL----PHWLPLF 339
L+ V+DT L L HW F
Sbjct: 79 PLIRVKDTRLGLGQLAAHWRSRF 101
>gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
thermopropionicum SI]
gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
thermopropionicum SI]
Length = 496
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
GDL + GI +DSR V LFV G + DGH Y+ EA +RGA+AVV + +++
Sbjct: 17 GDLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERGALAVVMERRVEL 72
>gi|392531398|ref|ZP_10278535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Carnobacterium maltaromaticum ATCC 35586]
Length = 491
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL--- 317
++EI I D+R ++ G LFVC G DGH + +A ++GAV ++A K ID+ +
Sbjct: 22 DLEINSITQDTREITEGSLFVCITGALFDGHQFAQDAVEKGAVLLIAEKPIDVSVPVIYV 81
Query: 318 --GCKALVIVED 327
+A+ IV D
Sbjct: 82 SNANRAMAIVAD 93
>gi|414083289|ref|YP_006991997.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Carnobacterium maltaromaticum LMA28]
gi|412996873|emb|CCO10682.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
[Carnobacterium maltaromaticum LMA28]
Length = 491
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL--- 317
++EI I D+R ++ G LFVC G DGH + +A ++GAV ++A K ID+ +
Sbjct: 22 DLEINSITQDTREITEGSLFVCITGALFDGHQFAQDAVEKGAVLLIAEKPIDVSVPVIYV 81
Query: 318 --GCKALVIVED 327
+A+ IV D
Sbjct: 82 ANANRAMAIVAD 93
>gi|387927132|ref|ZP_10129811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus methanolicus PB1]
gi|387589276|gb|EIJ81596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus methanolicus PB1]
Length = 486
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
EIT I +D+R+V G LF+C G DGH + A ++GA A++A +++ ++ +
Sbjct: 22 EITAIHNDNRLVEPGSLFICIKGHTVDGHDFAQSAVEKGAAAILAERKLQLD-----VPV 76
Query: 323 VIVEDTNLVLPHWLPLFIG 341
++V DT + F G
Sbjct: 77 IVVNDTYRAMAVLADAFYG 95
>gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium botulinum D str. 1873]
gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium botulinum D str. 1873]
Length = 483
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L + +S G L++E+ I++DSR V GD+FV G DGH ++++A +
Sbjct: 1 MKLIQILKGLEYKKIS--GTLDLEVNKIEYDSRKVLKGDVFVAIEGFNVDGHKFINKAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GA ++ SK + E + VE+T L F G
Sbjct: 59 NGAKVIICSKNTEFYEN---STYIKVENTRKALAIMASNFYG 97
>gi|394990711|ref|ZP_10383539.1| hypothetical protein SCD_03136, partial [Sulfuricella denitrificans
skB26]
gi|393790078|dbj|GAB73178.1| hypothetical protein SCD_03136, partial [Sulfuricella denitrificans
skB26]
Length = 244
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V +G+ DSR V+AGDLFV G + DGH Y+ + ++GAVA + + + G
Sbjct: 19 DVTFSGVTTDSRAVAAGDLFVALKGERFDGHNYVKQVMEQGAVAALVERR---DPAWGDF 75
Query: 321 ALVIVEDTNLVL----PHWLPLF 339
L++V+D L L HW F
Sbjct: 76 PLLLVKDARLALGELAGHWRSRF 98
>gi|404495264|ref|YP_006719370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter metallireducens GS-15]
gi|418065731|ref|ZP_12703102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter
metallireducens RCH3]
gi|123572782|sp|Q39YM4.1|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter metallireducens GS-15]
gi|373561811|gb|EHP88037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter
metallireducens RCH3]
Length = 511
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 244 ELLDESKVV-PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGA 302
L D ++V+ P G L +EI G+ DSR V +G LF G TDGH Y+ + RGA
Sbjct: 2 RLEDLARVINPSEAGGSLALEIEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRGA 61
Query: 303 VAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
VAVV + E + + V+D L + F G
Sbjct: 62 VAVVVEDPSRVPEGM---TWLKVDDARLAMSRAAAAFYG 97
>gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio aespoeensis Aspo-2]
gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio aespoeensis Aspo-2]
Length = 465
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
I ++ DSR V GDLF C G DGH + ++A+ RGAVAVVAS+
Sbjct: 25 INAVRTDSRAVEPGDLFFCIEGWNFDGHEFAAQAETRGAVAVVASR 70
>gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
gi|156858823|gb|EDO52254.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides uniformis ATCC 8492]
Length = 462
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+EITG+ DSR++ G LF+ G +TDGH Y+ A +GAVAV+
Sbjct: 1 MEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLC 46
>gi|363892002|ref|ZP_09319175.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacteriaceae bacterium
CM2]
gi|361964638|gb|EHL17660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacteriaceae bacterium
CM2]
Length = 486
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L +L+ K+ ++ G +V+I I ++S+ +FV +G DGH Y+ +A
Sbjct: 1 MNLQKLITTLKIKNIT--GKTDVDIQDIVYNSKFARENTVFVALIGMSVDGHEYIQDAYD 58
Query: 300 RGAVAVVASKEIDIEETLGCK-ALVIVEDTNLVLPHWLPLF 339
+G + SKE DI+ GC L+ VEDT L + +F
Sbjct: 59 KGVRVFIVSKETDIK---GCDITLITVEDTRDALANISDVF 96
>gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Burkholderia glumae BGR1]
gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Burkholderia glumae BGR1]
Length = 468
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 240 MSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M++ L D + ++P +V GD V + DSR V GDLFV G + D H +L+E
Sbjct: 1 MTMLTLHDAAALIPGATVIGDGSVAFARVSTDSRTVGEGDLFVALKGERFDAHDFLAEVA 60
Query: 299 KRGAVAVVASK 309
RGA A + S+
Sbjct: 61 ARGASAALVSR 71
>gi|333381688|ref|ZP_08473367.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Dysgonomonas gadei ATCC BAA-286]
gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Dysgonomonas gadei ATCC BAA-286]
Length = 483
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL +V + G+ +EITGIQ DSR AG F+ G + DGH Y++ A
Sbjct: 1 MKLKDLLKGIDIVEIK--GNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQYINNALD 58
Query: 300 RGAVAVVASKEID 312
GA V+ +++D
Sbjct: 59 LGAKVVIHQEKVD 71
>gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
15579]
gi|187773516|gb|EDU37318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sporogenes ATCC 15579]
Length = 482
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGC 319
EI I++DSR V GDLFVC G TDGH Y +A GA +V K++ E L C
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDL---EDLSC 74
>gi|415886473|ref|ZP_11548253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus methanolicus MGA3]
gi|387587160|gb|EIJ79483.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus methanolicus MGA3]
Length = 486
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 253 PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
P+ Y + EIT I +D+R+V G LF+C G DGH + A ++GA A++A +++
Sbjct: 12 PLVPYNGDDPEITAIHNDNRLVEPGSLFICIKGHTVDGHDFAQSAVEKGAAAILAERDLQ 71
Query: 313 IEETLGCKALVIVEDTNLVLPHWLPLFIG 341
++ ++IV++T + F G
Sbjct: 72 LD-----VPVIIVKNTYRAMAVLADAFYG 95
>gi|407973666|ref|ZP_11154577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nitratireductor indicus C115]
gi|407430726|gb|EKF43399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Nitratireductor indicus C115]
Length = 484
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+ITGI DSR V AG+LF G K DG + ++A RGA+AVVA
Sbjct: 20 AQITGISSDSRRVEAGNLFFALAGSKADGSTFAADAAGRGAIAVVA 65
>gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sinorhizobium fredii NGR234]
gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Sinorhizobium fredii NGR234]
Length = 486
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
E++I GI DSR V GDLFV G K +G Y+++A RGA AV+ ++
Sbjct: 24 EIDIAGITADSRQVKPGDLFVAVAGTKANGSAYIADALSRGAAAVIVAE 72
>gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
Length = 485
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
++E+ IQ SR V GD+FV G K DGH +++EA GAVAVV E D
Sbjct: 19 DIEVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFINEAISNGAVAVVGEAEYD 70
>gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria grayi DSM 20601]
gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria grayi DSM 20601]
Length = 455
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
E +TGI D+RV+ AGDLFV VG DGH ++ +A K GA A K D+
Sbjct: 22 ETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKAGASAAFWQK--DVPNPPADF 79
Query: 321 ALVIVEDTNLVLPHWLPLFI 340
L+ V+DT L L +++
Sbjct: 80 PLIFVDDTLLALQQTAAVYL 99
>gi|388543156|ref|ZP_10146447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. M47T1]
gi|388278468|gb|EIK98039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. M47T1]
Length = 455
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
MSLAELL + ++G +V G+ DSR + AG LFV G DGH YL++
Sbjct: 5 MSLAELLTP---LAARLHGQ-DVNFNGVSIDSRAIVAGQLFVALTGPNFDGHDYLADVAA 60
Query: 300 RGAVAVVASKEI 311
+GAVA + +E+
Sbjct: 61 KGAVAALVEREV 72
>gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase [Jonesia
denitrificans DSM 20603]
gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
denitrificans DSM 20603]
Length = 509
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 227 GKSRARIVEPKFKMSL---AELLDESKVVPVSVYGDL----EVEITG-IQHDSRVVSAGD 278
G SR + P M++ + + ++ ++ G+L +V +TG + DSR VS GD
Sbjct: 24 GCSRTEVTNPNEPMAVRTYSNVFTAQEIASIT-GGELSCPSDVTVTGQVTIDSRTVSTGD 82
Query: 279 LFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
LFV VG ++DGH Y A +GAV V++ K I
Sbjct: 83 LFVAVVGERSDGHDYACVAHSQGAVLVLSQKNI 115
>gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl tripeptide synthetase [Roseiflexus sp. RS-1]
gi|172048072|sp|A5URF5.1|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
Full=UDP-MurNAc-tripeptide synthetase
gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Roseiflexus sp. RS-1]
Length = 509
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
EI G+ +DSR V+ G LFV G TDGH Y+ +A +RGA AVV
Sbjct: 22 EIAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERGAAAVV 65
>gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio alaskensis G20]
gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio alaskensis G20]
Length = 471
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+M+L ++ D V D+ V +G+Q DSR V G+LF C G + DGH + +E
Sbjct: 1 MRMNLEQIRDALGAVGTLGGADMTVP-SGVQTDSRCVRDGELFFCISGERFDGHTFAAEV 59
Query: 298 DKRGAVAVVASK 309
++GA AVVA +
Sbjct: 60 LEKGACAVVAER 71
>gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Porphyromonas gingivalis W83]
gi|419970301|ref|ZP_14485802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Porphyromonas gingivalis W50]
gi|46576910|sp|Q7MWM7.1|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Porphyromonas gingivalis W83]
gi|392611114|gb|EIW93865.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Porphyromonas gingivalis W50]
Length = 487
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L + L E + P++V G++E E++ I DSR + G LFV G TDGH Y+ +A
Sbjct: 1 MKLEQYLSELR--PIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYT 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
+G A V D E+ GC V V DT
Sbjct: 59 QGCRAFVVEDLPD-EKPEGC-CFVQVSDT 85
>gi|433463281|ref|ZP_20420840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Halobacillus sp. BAB-2008]
gi|432187791|gb|ELK45048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Halobacillus sp. BAB-2008]
Length = 491
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 17/93 (18%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
++E+ G+ DSR GD+F+ G + DGH Y++ A ++GA +VA + D +
Sbjct: 21 DIEVKGLSMDSRTTCKGDVFIAIRGVEADGHRYIASAVQKGAAVIVAEEVTDTD-----V 75
Query: 321 ALVIVEDTNLVLP-----------HWLPLFIGI 342
+V+V DT+ L H+LP+ IGI
Sbjct: 76 PVVLVNDTSRALAMMACAFYKTPSHFLPV-IGI 107
>gi|424827301|ref|ZP_18252110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium sporogenes PA 3679]
gi|365980224|gb|EHN16260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium sporogenes PA 3679]
Length = 483
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI I++DSR V GDLFVC G TDGH Y +A GA +V K+++
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAQKAYDNGAKVIVCEKDLE 70
>gi|334147486|ref|YP_004510415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Porphyromonas gingivalis TDC60]
gi|333804642|dbj|BAK25849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Porphyromonas gingivalis TDC60]
Length = 487
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L + L E + P++V G++E E++ I DSR + G LFV G TDGH Y+ +A
Sbjct: 1 MKLEQYLSELR--PIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYT 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
+G A V D E+ GC V V DT
Sbjct: 59 QGCRAFVVEDLPD-EKPEGC-CFVQVSDT 85
>gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 3_1_5R]
gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. 3_1_5R]
Length = 479
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 261 EVEI-TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
EVEI TG++HDSR + G +FV G DGH ++ A ++GA ++ SKE+ ++ +G
Sbjct: 17 EVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQKGIG 75
>gi|337285810|ref|YP_004625283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermodesulfatator indicus DSM 15286]
gi|335358638|gb|AEH44319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanyl ligase [Thermodesulfatator
indicus DSM 15286]
Length = 457
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVAS---KEIDIE 314
GD+ V TG+ HD+R + G+LFV G + DGH ++ EA + GA ++ S +EI+I
Sbjct: 18 GDMGVSFTGVSHDTRTIKPGELFVAIKGPRFDGHDFVLEAIENGARGLLVSHWPEEINIF 77
Query: 315 ETLGCKALVIVEDT 328
+ +++ V DT
Sbjct: 78 KLHKAISVIKVSDT 91
>gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium gonidiaformans ATCC 25563]
gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium gonidiaformans ATCC 25563]
Length = 489
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 261 EVEI-TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
EVEI TG++HDSR + G +FV G DGH ++ A ++GA ++ SKE+ ++ +G
Sbjct: 27 EVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQKGIG 85
>gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Porphyromonas gingivalis ATCC 33277]
gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Porphyromonas gingivalis ATCC 33277]
Length = 487
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L + L E + P++V G++E E++ I DSR + G LFV G TDGH Y+ +A
Sbjct: 1 MKLEQYLSELR--PIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYT 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
+G A V D E+ GC V V DT
Sbjct: 59 QGCRAFVVEDLPD-EKPEGC-CFVQVSDT 85
>gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl tripeptide synthetase [Halanaerobium
hydrogeniformans]
gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium
hydrogeniformans]
Length = 487
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L ++L+ E K++ G ++ I+ +Q+DSR + DLF+ G DGH Y+ EA
Sbjct: 1 MKLNKILNGIEHKIIN----GKNDLNISDLQYDSRKIKNNDLFIAIKGFNVDGHDYIKEA 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDT 328
++GA AV+ K+ +++ L + VE+T
Sbjct: 57 VEKGATAVIVEKK--LKKYLSGITYIEVENT 85
>gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
Length = 498
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M++ +++D K+ ++YG L + I DSR + GD+FV G DGH ++ + +
Sbjct: 1 MNILDIIDNIKIK--TIYGKLPDSVNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIE 58
Query: 300 RGAVAVVASK--EIDIEETLGCKALVIVE 326
+GA V+AS+ ++E C LV+ E
Sbjct: 59 QGAALVIASRYENYNVEN---CAVLVVRE 84
>gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum B1 str. Okra]
gi|429247504|ref|ZP_19210747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum CFSAN001628]
gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum B1 str. Okra]
gi|428755458|gb|EKX78086.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum CFSAN001628]
Length = 483
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI I++DSR V GDLFVC G TDGH Y +A GA +V K+++
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLE 70
>gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Croceibacter atlanticus HTCC2559]
gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Croceibacter atlanticus HTCC2559]
Length = 486
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
V G+ V IT ++ DSR VS D+FV G +DGH Y+ A +GA+A+V
Sbjct: 16 VIGNTNVAITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKNAVNQGAIAIVC 67
>gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl tripeptide synthetase [Herpetosiphon
aurantiacus DSM 785]
gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
aurantiacus DSM 785]
Length = 514
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
S AELL V GD V I+ + +DSR V+ G LFV G DGH Y++ A ++
Sbjct: 3 SFAELLLH---VTHQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQ 59
Query: 301 GAVAVV 306
GAVAVV
Sbjct: 60 GAVAVV 65
>gi|387817732|ref|YP_005678077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum H04402 065]
gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum H04402 065]
Length = 483
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI I++DSR V GDLFVC G TDGH Y +A GA +V K+++
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLE 70
>gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum NCTC 2916]
gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum Bf]
gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum Ba4 str. 657]
gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum NCTC 2916]
gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum Bf]
gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum Ba4 str. 657]
Length = 483
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI I++DSR V GDLFVC G TDGH Y +A GA +V K+++
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLE 70
>gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. ATCC 3502]
gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. ATCC 19397]
gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. Hall]
gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A2 str. Kyoto]
gi|166224774|sp|A7FTY1.1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|166224775|sp|A5I1T6.1|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. ATCC 3502]
gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. ATCC 19397]
gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A str. Hall]
gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A2 str. Kyoto]
Length = 483
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI I++DSR V GDLFVC G TDGH Y +A GA +V K+++
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLE 70
>gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Heliobacillus mobilis]
Length = 528
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
EI+G+ +DSR V+ G LF C G+KTDGH + ++A + GA +V + +D++
Sbjct: 55 EISGLAYDSRQVAPGFLFFCIPGQKTDGHNFAAQAVEGGAAVLVVERFVDLK 106
>gi|392953124|ref|ZP_10318678.1| hypothetical protein WQQ_27500 [Hydrocarboniphaga effusa AP103]
gi|391858639|gb|EIT69168.1| hypothetical protein WQQ_27500 [Hydrocarboniphaga effusa AP103]
Length = 466
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
D+R + GDLFV VG + DGH YL EA +RGAV + S+ ID+
Sbjct: 29 DTRQLQPGDLFVALVGERFDGHDYLDEARQRGAVGALVSRAIDV 72
>gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
prausnitzii L2-6]
Length = 492
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL+ V V G LE++I I +DSR + G LFVC VG + D H Y ++
Sbjct: 1 MKLEQLLE--GVSYTLVQGSLELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYAAQCVA 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
G A+V +ID+ G A++ VE + L
Sbjct: 59 DGVTALVVQHDIDLSTVPG-AAVLKVESSRYALA 91
>gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum F str. Langeland]
gi|384461858|ref|YP_005674453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Clostridium botulinum F str. 230613]
gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum F str. Langeland]
gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Clostridium botulinum F str. 230613]
Length = 483
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI I++DSR V GDLFVC G TDGH Y +A GA +V K+++
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLE 70
>gi|402837451|ref|ZP_10885975.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Eubacteriaceae bacterium OBRC8]
gi|402275093|gb|EJU24255.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Eubacteriaceae bacterium OBRC8]
Length = 486
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L +L+ K+ ++ G +V+I I ++S+ +FV VG DGH Y+ +A
Sbjct: 1 MNLQKLIKTLKIQNIT--GKTDVDIQDIVYNSKFARENTVFVALVGMSVDGHNYIQDAYD 58
Query: 300 RGAVAVVASKEIDIEETLGCK-ALVIVEDTNLVLPHWLPLF 339
G + SKE DI+ GC L+ VEDT L + +F
Sbjct: 59 EGVRVFIVSKETDIK---GCDITLITVEDTRDALANISDVF 96
>gi|390562799|ref|ZP_10244968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrolancetus hollandicus Lb]
gi|390172627|emb|CCF84281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrolancetus hollandicus Lb]
Length = 463
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
I+HDSR V GDLF+ VG + DGH +L +A +RGA A + + T LV VE
Sbjct: 28 IRHDSRQVEPGDLFIAVVGERLDGHDFLGQAIERGAGAAMVDRAHAAALTGVPLPLVAVE 87
Query: 327 DTNLVLPH----WLPLF 339
+T L H W F
Sbjct: 88 NTVTALQHLAAYWRATF 104
>gi|62185438|ref|YP_220223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila abortus S26/3]
gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydophila abortus S26/3]
Length = 448
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I+G+ DS+ V GDLF G+ TDGH +L +A + GAVA V SK+ ++ G + L
Sbjct: 25 KISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQ-GDSFGLE-L 82
Query: 323 VIVEDTN 329
++V DT
Sbjct: 83 IVVNDTT 89
>gi|388457445|ref|ZP_10139740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Fluoribacter dumoffii Tex-KL]
Length = 441
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
L E+TG+ DSR + G+LFV G + DGH ++ EA+ RGA+A V + I+
Sbjct: 16 LNTELTGVCTDSRELEPGNLFVAIRGERFDGHEFIKEAETRGAIAAVVNHTIE 68
>gi|422346531|ref|ZP_16427445.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Clostridium perfringens WAL-14572]
gi|373226076|gb|EHP48403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Clostridium perfringens WAL-14572]
Length = 484
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ +E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSAQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 511
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L ++L +++ + D +V+I I ++S+ ++ LFV G TDGH Y+ +A +
Sbjct: 1 MNLRKILKNIEILDTKNFIDFDVDIKKICYNSKFITESSLFVAIKGYITDGHKYILQAYE 60
Query: 300 RGAVAVVASKEIDIE 314
+GAV + ID E
Sbjct: 61 KGAVCAIVEDFIDCE 75
>gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
Length = 465
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
E GI DSR V G +F G + DGH ++ EA KRGA+AVV ++++ + +
Sbjct: 12 EAQGITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVE-----AVQRV 66
Query: 323 VIVEDTNLVLPHWLPLFIG 341
+ VE+T L LF G
Sbjct: 67 IKVENTRKTLAESAHLFYG 85
>gi|433460615|ref|ZP_20418242.1| UDP-N-acetylmuramyl tripeptide synthetase [Halobacillus sp.
BAB-2008]
gi|432191258|gb|ELK48226.1| UDP-N-acetylmuramyl tripeptide synthetase [Halobacillus sp.
BAB-2008]
Length = 515
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYL 294
L ELL S + V+ + D ++++ G+ ++SR V+ GD+FVC G KTDGH+Y+
Sbjct: 4 LKELL--SSIHIVAAWNDRDMDVQGLAYNSRNVTPGDVFVCIKGFKTDGHVYI 54
>gi|395241892|ref|ZP_10418892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus pasteurii CRBIP 24.76]
gi|394480640|emb|CCI85132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus pasteurii CRBIP 24.76]
Length = 455
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
KM LAE+ +K + ++ G+ E+E+T + DSR +SAG LFV G + DGH +++ A
Sbjct: 1 MKMQLAEI---AKALDITCEGNKELEVTSVAFDSRKISAGGLFVPLEGER-DGHDFVASA 56
Query: 298 DKRGAVAV 305
GAVA
Sbjct: 57 IGNGAVAT 64
>gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl tripeptide synthetase [Roseiflexus castenholzii
DSM 13941]
gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
DSM 13941]
Length = 515
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 29/43 (67%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
IT I +DSR V G LFV G TDGHLY+ +A +RGA AVV
Sbjct: 25 ITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQAIERGAAAVV 67
>gi|374997241|ref|YP_004972740.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfosporosinus
orientis DSM 765]
gi|357215607|gb|AET70225.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfosporosinus
orientis DSM 765]
Length = 495
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 236 PKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLS 295
P SL +++ E +V S GD +V I G+ DSR V GDL+ C G + DGH +
Sbjct: 2 PTANKSLVDIIKEIEVQASS--GDCQVIIRGMSMDSRHVQPGDLYACVPGSQADGHDFAG 59
Query: 296 EADKRGAVAVVASK 309
A GAVA+V +
Sbjct: 60 RAVDSGAVALVVER 73
>gi|418020485|ref|ZP_12659743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Regiella
insecticola R5.15]
gi|347604160|gb|EGY28868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Regiella
insecticola R5.15]
Length = 542
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSR+V+ GDLF+ VG +TDG Y+S+A +GA+AV+A +
Sbjct: 33 DSRLVAKGDLFIALVGHQTDGRHYISQAIAQGAIAVIAEAQ 73
>gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Oceanicaulis sp. HTCC2633]
gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Oceanicaulis sp. HTCC2633]
Length = 485
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+LA+LL E+ P G VE+TG+ DSR V GDLF G K DG ++ A ++
Sbjct: 4 TLADLLPETLSAPQGADG---VEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEK 60
Query: 301 GAVAVVASKEI 311
GAV ++A K +
Sbjct: 61 GAVCILAPKGV 71
>gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl tripeptide synthetase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
obsidiansis OB47]
Length = 500
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+ L +L++ V+ +V GD + +IT I ++S+ G FVC G KTDGH Y+ EA +
Sbjct: 15 LKLKDLIENIDVLETNV-GDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQ 73
Query: 300 RGAVAVVASKEIDIEETLG 318
GA VV + D + G
Sbjct: 74 NGARLVVVDEFFDTSKIEG 92
>gi|408370291|ref|ZP_11168069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Galbibacter sp. ck-I2-15]
gi|407744369|gb|EKF55938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Galbibacter sp. ck-I2-15]
Length = 493
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 255 SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+VYG+ + I + DSR VS D+FV G DGH Y+++A + GA+AV+ +
Sbjct: 15 AVYGNTDTHINAVHFDSRKVSLDDVFVAVPGTAVDGHDYITKAIESGAIAVICER 69
>gi|386758238|ref|YP_006231454.1| protein MurE [Bacillus sp. JS]
gi|384931520|gb|AFI28198.1| MurE [Bacillus sp. JS]
Length = 494
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
EIT I+ DSR V G LFVC G DGH + +A + GA A+VA +E
Sbjct: 23 EITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAERE 70
>gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella bivia JCVIHMP010]
gi|424900128|ref|ZP_18323670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella bivia DSM
20514]
gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella bivia JCVIHMP010]
gi|388592328|gb|EIM32567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prevotella bivia DSM
20514]
Length = 485
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K + ++ G+ +++I GI DSR + AG LFV G + DGH ++++A +
Sbjct: 1 MKLTDLLKGVKTLNIN--GNADIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFINKAIE 58
Query: 300 RGAVAVV 306
GA AV+
Sbjct: 59 LGAKAVL 65
>gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
19.5.1]
gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
19.5.1]
Length = 497
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L ELL + V ++ G + E+ + +SR++ G+LF+C G D HL E +RG
Sbjct: 6 LIELLGNNLVEVTNLNGK-DPEVNDVVSNSRLLKPGNLFICLQGTSFDSHLLAPELQERG 64
Query: 302 AVAVVASKEIDIE 314
A A++A K+ID++
Sbjct: 65 AAALIAEKKIDVD 77
>gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
V453]
gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
V453]
Length = 495
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 240 MSLAELLDESKVVPVSVY-GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +L S V+ +V G +VEITGI+ DSR V GDLF+C G DGHL+ ++A
Sbjct: 1 MKLKQL---SSVLAAAVIDGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHLFAAQAA 57
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
++GA A+V ++++++ VIV+D+ + F
Sbjct: 58 EKGAAALVVERKLEVD-----LPQVIVKDSRFAMAGLANTF 93
>gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Phascolarctobacterium succinatutens YIT 12067]
gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Phascolarctobacterium succinatutens YIT 12067]
Length = 495
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
SL LL +++V+ G + IT + DSR V AG LF+C G DGH +L+ A ++
Sbjct: 7 SLLALLPQAEVI-----GSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEK 61
Query: 301 GAVAVV 306
GAVA +
Sbjct: 62 GAVAAL 67
>gi|407477521|ref|YP_006791398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Exiguobacterium antarcticum B7]
gi|407061600|gb|AFS70790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Exiguobacterium antarcticum B7]
Length = 487
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+LAEL++ + +E ++T + DSR V G LFV G DGH Y +A+
Sbjct: 1 MNLAELIEVIQTQKTERM--VEADVTALTTDSRDVKPGTLFVAIKGYTVDGHDYAQQAEA 58
Query: 300 RGAVAVVASKEIDI 313
+GAVA+V+ + +D+
Sbjct: 59 QGAVAIVSERLLDV 72
>gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl tripeptide synthetase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 540
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+++I+G+ + S+ VS +LF C G + DGH + +A +GAVA++ +EI L
Sbjct: 34 DIKISGLNYHSQNVSQNELFFCLTGHQYDGHAFAEKAYNKGAVALIVEREIPHIPLLQ-- 91
Query: 321 ALVIVEDTNLVLPH 334
V+VE++ L H
Sbjct: 92 --VVVENSRRALSH 103
>gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Clostridium sp. D5]
gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Clostridium sp. D5]
Length = 486
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 240 MSLAELLD--ESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L +LL+ E +V+ G E EIT +DSR V G FVC G DGH ++ E
Sbjct: 1 MKLNQLLERLEYEVIQ----GSDEAEITTFINDSRKVEKGSAFVCISGAVVDGHDFVEEV 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
++GA AV+ +E++ E + ++ V D+ L + G
Sbjct: 57 AQKGAAAVIVEREVEAPEDM---TVIRVADSRYALALMSAAYFG 97
>gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378778513|ref|YP_005186952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila subsp. pneumophila ATCC 43290]
gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|364509329|gb|AEW52853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
pneumophila subsp. pneumophila ATCC 43290]
Length = 461
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+++A LL +S + +ITG+ D+R + G+LF VG + DGH ++ EA+
Sbjct: 20 ITIASLLSQSC--------QINADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEA 71
Query: 300 RGAVAVVASKEID 312
+GA A V ++ ID
Sbjct: 72 KGASAAVVNRSID 84
>gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
[Ralstonia eutropha H16]
gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
[Ralstonia eutropha H16]
Length = 466
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V GD VE + + DSR V GDLFV G + D H ++++ RGA AV+ S+E+D
Sbjct: 21 VCGDGAVEFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSREVDA-- 78
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIGIRRR 345
G A+V DT + L L G RR+
Sbjct: 79 --GVPAIV-APDTRIALGE---LGAGWRRQ 102
>gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
owensensis OL]
gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
owensensis OL]
Length = 495
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+ L +L++ V+ +V GD + +IT I ++S+ G FVC G KTDGH Y+ EA +
Sbjct: 10 LKLKDLIENIDVLETNV-GDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQ 68
Query: 300 RGAVAVVASKEIDIEETLG 318
GA +V + D + G
Sbjct: 69 NGARLIVVDEFFDTSKIKG 87
>gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Eubacterium eligens ATCC 27750]
gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Eubacterium eligens ATCC 27750]
Length = 497
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V GD +V++TGI DSR + G FVC G +DGH Y+ + + +V VV E + ++
Sbjct: 23 VCGDTDVDVTGITSDSRKMQDGYAFVCIKGAVSDGHKYIDQIKDKASVIVVLDGEYEAKD 82
Query: 316 TLGCKALVIVED-TNLVLP 333
CKA V+ D T L L
Sbjct: 83 ---CKAAVVSTDNTRLALA 98
>gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter uraniireducens Rf4]
gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter uraniireducens Rf4]
Length = 506
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+EL V+P+ V G + EI G+ +DSR V AG LF G +DG+ ++ A K
Sbjct: 1 MLLSEL--TKSVMPLEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFVDTAIK 58
Query: 300 RGAVAVVASKEIDIEETLGCKAL--VIVEDTNLVLPHWLPLFIG 341
GAVAVV ++ TL + + V V D L + F G
Sbjct: 59 AGAVAVV------VDGTLTPQGIPWVRVADARLAMSRMAAAFYG 96
>gi|397668291|ref|YP_006509828.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila subsp. pneumophila]
gi|395131702|emb|CCD09995.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[Legionella pneumophila subsp. pneumophila]
Length = 445
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+++A LL +S + +ITG+ D+R + G+LF VG + DGH ++ EA+
Sbjct: 4 ITIASLLSQSC--------QINADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEA 55
Query: 300 RGAVAVVASKEID 312
+GA A V ++ ID
Sbjct: 56 KGASAAVVNRSID 68
>gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 3_1_33FAA]
gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Bacteroides sp. 3_1_33FAA]
Length = 484
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD+ EI+GI DSR++ +F+ G +TDGH Y+ +A ++GA VV ++ E
Sbjct: 15 IIGDMAQEISGINMDSRLIEPDHIFIAVKGTQTDGHTYIQKAIEKGARTVVCE---NLPE 71
Query: 316 TLGCKALVI-VEDTNLVLPHWLPLFIG 341
TL I V DT V+ F G
Sbjct: 72 TLIENVTYIKVNDTEDVVGKLATTFYG 98
>gi|385799625|ref|YP_005836029.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Halanaerobium praevalens DSM 2228]
gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Halanaerobium
praevalens DSM 2228]
Length = 465
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
G+L++++ I DSR V G LF+ +G+ DGH YL EA K GA AV+
Sbjct: 20 GNLDLKVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLKEAVKNGASAVI 68
>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanylligase [Thermocrinis
albus DSM 14484]
gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
DSM 14484]
Length = 441
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDT 328
DSR V GD+FV G+K DGH ++ EA +RGAV VV +E+ ++E K ++VED+
Sbjct: 27 DSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVEREVPVKEG---KFALVVEDS 82
>gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacillus sp. WCH70]
gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70]
Length = 490
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
IT I+ DSR V G LF+C G DGH + +A + GAVAV+A + +D++ ++
Sbjct: 23 ITSIEMDSRQVKNGALFICIKGFTVDGHDFAKQAVENGAVAVIAERPLDVD-----VPVI 77
Query: 324 IVEDTNLVLPHWLPLFIG 341
+V D+ + F G
Sbjct: 78 VVRDSRRAMAMLADAFYG 95
>gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
[Symbiobacterium thermophilum IAM 14863]
gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
[Symbiobacterium thermophilum IAM 14863]
Length = 497
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
GD EIT + +DSR V+ G LFV GR DGH + EA +RGA A+V + +
Sbjct: 15 GDPAAEITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVERPV 68
>gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida F1]
gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas putida F1]
Length = 455
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE---IDIEETL--GC 319
TG+ DSR VSAG LFV G + DGH YL++ +GAVA + +E +D+ + L GC
Sbjct: 26 TGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVAGVDLPQLLVKGC 85
Query: 320 K 320
+
Sbjct: 86 R 86
>gi|405980425|ref|ZP_11038764.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Actinomyces turicensis ACS-279-V-Col4]
gi|404390418|gb|EJZ85487.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Actinomyces turicensis ACS-279-V-Col4]
Length = 468
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
D +V + + DSR+ SAG +V +G TDGH Y+ +A GAVA++ +D+ ++
Sbjct: 20 DRQVVMNRVVTDSRLASAGSAYVARIGEATDGHDYVKQAVDNGAVALIVEHLVDVPSSI- 78
Query: 319 CKALVIVEDTNLVL 332
A +IVED+ L
Sbjct: 79 --AQIIVEDSTYAL 90
>gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Ruminococcaceae bacterium D16]
gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Ruminococcaceae bacterium D16]
Length = 495
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
++EIT I +D+R + G LFV G KTDG LY+ EA +GA AVV +
Sbjct: 20 DMEITSISYDTRTLLPGALFVALPGAKTDGSLYIDEALAKGAAAVVCRR 68
>gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
Length = 453
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
EITGI DSR V GDLF+ +G DGH Y+ A ++GA A ++ KE
Sbjct: 24 EITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESAFEKGAAASLSLKE 71
>gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A3 str. Loch Maree]
gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium botulinum A3 str. Loch Maree]
Length = 483
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
EI I++DSR V GDLF+C G TDGH Y +A GA +V K D+EE
Sbjct: 21 EIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEE 71
>gi|397665208|ref|YP_006506746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila subsp. pneumophila]
gi|395128619|emb|CCD06837.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[Legionella pneumophila subsp. pneumophila]
Length = 445
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+++A LL +S + +ITG+ D+R + G+LF VG + DGH ++ EA+
Sbjct: 4 ITIASLLSQSC--------QINADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEA 55
Query: 300 RGAVAVVASKEID 312
+GA A V ++ ID
Sbjct: 56 KGASAAVVNRAID 68
>gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[gamma proteobacterium HdN1]
gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[gamma proteobacterium HdN1]
Length = 974
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK-EIDIEETLGC 319
+V ++G+Q DSR V GDLFV G DG Y+ +A KRGA AV+A + + E+ +
Sbjct: 22 DVMVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLADRVGVSAEQVVNA 81
Query: 320 KALVIVED 327
VI D
Sbjct: 82 HGNVIWRD 89
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVI 324
G+ D+R + + D+F VG K D H +L +A GA V S+ +D++ +
Sbjct: 540 AGVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGACGAVVSRWVDVD-----LPQIK 594
Query: 325 VEDTNLVLPHWLPLF 339
VEDT L L W +F
Sbjct: 595 VEDTRLALGAWAGMF 609
>gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Pseudoxanthomonas suwonensis 11-1]
gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Pseudoxanthomonas suwonensis 11-1]
Length = 471
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V + I HD+R +SAG L++ G + DGH + ++A RGAVA++ + +D++
Sbjct: 21 DVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALLVERLLDVDAP---- 76
Query: 321 ALVIVEDTNLVL 332
++VED+ L L
Sbjct: 77 -QLLVEDSELAL 87
>gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
cellulosilyticus DSM 2522]
gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
cellulosilyticus DSM 2522]
Length = 491
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
+++ IT + DSR V+ G LF C G DGH + ++A ++G VA+VA K++++
Sbjct: 21 NIDQSITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKGTVAIVAEKDLNV 75
>gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sphingobacterium spiritivorum ATCC 33861]
gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sphingobacterium spiritivorum ATCC 33861]
Length = 484
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 242 LAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+ +L D +PV V G L+VE+T + DSR + G LFV G TDGHL++ +A ++
Sbjct: 1 MIKLKDILHAIPVQEVVGQLDVEVTSLCFDSRQANEGSLFVAVRGVHTDGHLFVEKAIQQ 60
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
G ++ +E+ E++ G + +V DT L
Sbjct: 61 GCTLIMV-EEMPAEKSEGVTYM-MVADTAYAL 90
>gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Peptoniphilus lacrimalis 315-B]
gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Peptoniphilus lacrimalis 315-B]
Length = 509
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + +++ + DL+ EI+ + ++S + A LFV G+ TDGH Y+ A
Sbjct: 1 MKLREILKDIEIIDIRGKIDLDTEISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKN 60
Query: 300 RGAVAVVA 307
GA+ V
Sbjct: 61 HGAIVAVV 68
>gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pectobacterium wasabiae WPP163]
gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae
WPP163]
Length = 495
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
E+ + + DSRV +AGDLFV VG KTDG Y+ +A +G A+VA E
Sbjct: 19 ELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAIVAEAE 68
>gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[Cupriavidus metallidurans CH34]
gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[Cupriavidus metallidurans CH34]
Length = 466
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
+ S+ GD + + DSR V GDLFV G + D H +L++ RGA AV+ S++
Sbjct: 16 IAGASISGDATCSFSRVHTDSRTVEPGDLFVALKGERFDAHDFLADVVARGAAAVMVSRK 75
Query: 311 IDIE 314
+D++
Sbjct: 76 VDVD 79
>gi|373114812|ref|ZP_09529021.1| hypothetical protein HMPREF9466_03054 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
gi|371650992|gb|EHO16428.1| hypothetical protein HMPREF9466_03054 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
Length = 174
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
TG++HDSR ++ G++F+ G DGH ++ A ++GA V SKE+ ++ +G
Sbjct: 26 TGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARLVFVSKEVSCQQGIG 79
>gi|340622891|ref|YP_004741343.1| UDP-MurNAc-tripeptide synthetase [Capnocytophaga canimorsus Cc5]
gi|339903157|gb|AEK24236.1| UDP-MurNAc-tripeptide synthetase [Capnocytophaga canimorsus Cc5]
Length = 483
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L ++L +++ +S G++ ++ + DSR++ GD+FV G +DGH ++S+A +
Sbjct: 1 MNLKDILQNIEIISLS--GEINTQVGDLVQDSRLIKQGDVFVAIKGTASDGHQFISKAIE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GA V+ +EI +ET+ V V+D+ L F G
Sbjct: 59 MGA-KVIVCEEIP-QETISEIVYVKVKDSVSALATMASNFYG 98
>gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium lentocellum
DSM 5427]
gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
DSM 5427]
Length = 483
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L++LL + + V V G+ E+ + +DSR+ + LF+ G KTDGH ++ A
Sbjct: 1 MELSKLL--TGLNYVCVKGNEHQEVDHMIYDSRIKTNAGLFIAIEGFKTDGHQFIEAAIA 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
GA A++ K+++I+E + ++ VEDT L +
Sbjct: 59 NGAKAILVQKDVEIKEDV---TIIKVEDTRLAMA 89
>gi|373859818|ref|ZP_09602541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus sp.
1NLA3E]
gi|372450461|gb|EHP23949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus sp.
1NLA3E]
Length = 458
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 254 VSVYGDL----EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+SV DL +VEI+G+ D+R +S G+LF+ G K DGH ++ +A K+GA A + K
Sbjct: 13 ISVENDLSSFADVEISGVCIDTRKISHGNLFIPFKGEKADGHCFVEQALKQGAAAALWQK 72
Query: 310 EIDIEETLGCKALVIVEDT 328
D+ +V+VEDT
Sbjct: 73 --DVPNPPLHLPIVVVEDT 89
>gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999]
Length = 469
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 245 LLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVA 304
L+D ++ V ++ G+ ++ IT + D+R +SA LF+ VG +GH++ +EA + GAVA
Sbjct: 6 LIDIAQQVNGTLQGN-DLIITNVSTDTREISADSLFIALVGPNFNGHVFANEARQNGAVA 64
Query: 305 VVASKEIDIEETLGCKALVIVEDTNLVL 332
++AS+ ++ +++VEDT L
Sbjct: 65 MIASEPVEAH-----MPVIMVEDTKAAL 87
>gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter
fumaroxidans MPOB]
gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Syntrophobacter fumaroxidans MPOB]
Length = 504
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+L LL + +++ + G L+V +TGI +DSR + AG++FV G + DG+ ++ EA +
Sbjct: 4 ALNNLLRDVEILQTA--GPLDVPVTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPEAVRS 61
Query: 301 GAVAVVASKEIDIEETLG---CKALVI-VEDTNLVLPHWLPLFIG 341
GA AV I ET+G C A V+ V D+ + + G
Sbjct: 62 GASAV-------ITETVGFSECPATVVRVSDSRKAMARMAANYYG 99
>gi|410096280|ref|ZP_11291268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides goldsteinii CL02T12C30]
gi|409226617|gb|EKN19524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Parabacteroides goldsteinii CL02T12C30]
Length = 490
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L+ V+ V G +V+I GIQ DSR V G LFV G DGH Y+ A
Sbjct: 1 MELKKLIHTLDVL--EVVGTDDVKIAGIQSDSRKVEDGFLFVAVRGTAVDGHAYIDGAIA 58
Query: 300 RGAVAVVA 307
+GAVAVV
Sbjct: 59 KGAVAVVC 66
>gi|336171694|ref|YP_004578832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lacinutrix sp. 5H-3-7-4]
gi|334726266|gb|AEH00404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Lacinutrix sp. 5H-3-7-4]
Length = 487
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV +V G V + I +SR V+ DLFV G DGH Y+ A K+GA+AVV
Sbjct: 10 KVTINAVVGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIENAIKQGAIAVVCEY 69
Query: 310 EIDIEETLG-CKALVIVEDTNLVLPHWLPLFIG 341
+ +TL + ++VED+++ L + G
Sbjct: 70 ---LPKTLKEGISYIVVEDSSIALAIMASNYYG 99
>gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis mediterranei U32]
gi|384151531|ref|YP_005534347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis mediterranei S699]
gi|399539984|ref|YP_006552646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis mediterranei S699]
gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis mediterranei U32]
gi|340529685|gb|AEK44890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis mediterranei S699]
gi|398320754|gb|AFO79701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis mediterranei S699]
Length = 500
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
Query: 240 MSLAELLDESKVVPVSVY-GDLEVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+SLAE+ D VV ++ D ++TG ++ D+R +++G LFV G K DGH + ++A
Sbjct: 4 LSLAEIAD---VVGGRLHRADPGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQA 60
Query: 298 DKRGAVAVVASKEID 312
+ GAVAV+A++E+D
Sbjct: 61 VEAGAVAVLAAREVD 75
>gi|410637808|ref|ZP_11348378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
lipolytica E3]
gi|410142494|dbj|GAC15583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
lipolytica E3]
Length = 463
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
ITG+ D+R + GD+F+ VG DGH ++ A GA A++ S+++ + L C +
Sbjct: 24 ITGVSTDTRTLGQGDVFIALVGPNFDGHKFVDVAASNGATALIVSQKVKTD--LPC---I 78
Query: 324 IVEDTNLVLPHW 335
+VEDT L L +
Sbjct: 79 LVEDTKLALGEF 90
>gi|404318792|ref|ZP_10966725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Ochrobactrum anthropi CTS-325]
Length = 490
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
EVEITG+ DSR V G LF G K DG ++ +A KRGA A++A K+ + + G
Sbjct: 21 EVEITGVTSDSRKVERGFLFAALKGVKADGAAFVVDAVKRGASAIIAGKDTAVADA-GVP 79
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
L V+D L L F G
Sbjct: 80 VL-HVDDPRLALAVAAAQFYG 99
>gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Legionella longbeachae D-4968]
gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Legionella longbeachae NSW150]
gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Legionella longbeachae D-4968]
gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella longbeachae NSW150]
Length = 441
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+ E+TGI DSR + +G LF+ G + DGH ++ EA+ RGAVA V S ++
Sbjct: 15 QISTELTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSHRVE 68
>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Chthoniobacter flavus Ellin428]
gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Chthoniobacter flavus Ellin428]
Length = 455
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
GD + +T + DSR + AGDLFV G K DGH +++EA KRGA +
Sbjct: 20 GDPQGTVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGAAGAI 68
>gi|385873468|gb|AFI91988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Pectobacterium sp. SCC3193]
Length = 495
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
E+ + + DSRV +AGDLFV VG KTDG Y+ +A +G A+VA E
Sbjct: 19 ELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAIVAEAE 68
>gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc kimchii IMSNU 11154]
gi|339491492|ref|YP_004705997.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc sp. C2]
gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc kimchii IMSNU 11154]
gi|338853164|gb|AEJ31374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc sp. C2]
Length = 443
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
V+ G+ ++++TG+ +SR V GDLFV V +DGH YL +A RGA AV+
Sbjct: 11 VLSAVTQGNDQIKVTGVAFNSRDVKIGDLFVALVA-DSDGHRYLQDALDRGAAAVLVDDN 69
Query: 311 IDIEETLGCKALVIVEDT 328
I E L +IV+DT
Sbjct: 70 HAISEKLPA---IIVKDT 84
>gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis A/HAR-13]
gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis A/HAR-13]
Length = 450
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASD 71
>gi|404404886|ref|ZP_10996470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Alistipes sp. JC136]
Length = 485
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 242 LAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
L+ELL K PV +++GD + G+ +DSR V GD F G ++DGH Y+ A ++
Sbjct: 4 LSELL---KNTPVGALHGDGSAPVAGLAYDSRAVKPGDCFFAVPGTQSDGHDYIPMAVEK 60
Query: 301 GAVAVVASKEIDIEETLG-CKALVIVEDT 328
GA AVV + + ET A V+VED+
Sbjct: 61 GAAAVVCER---MPETAAEGVAYVVVEDS 86
>gi|387132317|ref|YP_006298289.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella intermedia 17]
gi|386375165|gb|AFJ08853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella intermedia 17]
Length = 486
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K P+++ G+ + +I GI DSR + G LFV G +TDGH ++ +A +
Sbjct: 1 MKLNDLLKNIK--PLNIVGNTDKDIKGINIDSRKIEQGHLFVAMKGTQTDGHKFIKKAIE 58
Query: 300 RGAVAVV 306
GA AV+
Sbjct: 59 LGASAVL 65
>gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Deinococcus proteolyticus MRP]
gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Deinococcus proteolyticus MRP]
Length = 491
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
E ++TG+ H++ G LFV G + DGH ++++A +RGAVAV+
Sbjct: 20 EADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLG 66
>gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
KM20]
gi|414596568|ref|ZP_11446142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE E16]
gi|421876449|ref|ZP_16308006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE C10]
gi|421879171|ref|ZP_16310644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE C11]
gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
KM20]
gi|372557742|emb|CCF24126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE C10]
gi|390446970|emb|CCF26764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE C11]
gi|390482589|emb|CCF28203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE E16]
Length = 444
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+ITG+ DSR V GDLFV V DGHLY+ +A GAVAV+ + I +
Sbjct: 21 DITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGAVAVLVDDQHAITPDIPA--- 76
Query: 323 VIVEDTNLVL 332
+IV DT L L
Sbjct: 77 IIVPDTLLAL 86
>gi|339441959|ref|YP_004707964.1| hypothetical protein CXIVA_08950 [Clostridium sp. SY8519]
gi|338901360|dbj|BAK46862.1| hypothetical protein CXIVA_08950 [Clostridium sp. SY8519]
Length = 560
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
L+ EITG DSR V G LF+ VG++ DGH ++ + +GA AV++ +++ EE G
Sbjct: 28 LDTEITGAVTDSRAVQKGGLFIPVVGKRADGHRFIPDVFAQGAAAVLSERKLREEELYG 86
>gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis 434/Bu]
gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis L2tet1]
gi|339625507|ref|YP_004716986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia trachomatis L2c]
gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis 434/Bu]
gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|339460695|gb|AEJ77198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Chlamydia trachomatis L2c]
gi|440526571|emb|CCP52055.1| putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelateligase/UDP-N-acetylmuramoyl-
tripeptide:D-alanyl-D-alanine ligase [Chlamydia
trachomatis L2b/8200/07]
gi|440536395|emb|CCP61908.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/795]
gi|440537289|emb|CCP62803.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L1/440/LN]
gi|440538178|emb|CCP63692.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L1/1322/p2]
gi|440539068|emb|CCP64582.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L1/115]
gi|440539957|emb|CCP65471.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L1/224]
gi|440540848|emb|CCP66362.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2/25667R]
gi|440541736|emb|CCP67250.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L3/404/LN]
gi|440542624|emb|CCP68138.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/UCH-2]
gi|440543515|emb|CCP69029.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/Canada2]
gi|440544406|emb|CCP69920.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/LST]
gi|440545296|emb|CCP70810.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/Ams1]
gi|440546186|emb|CCP71700.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/CV204]
gi|440914448|emb|CCP90865.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/Ams2]
gi|440915338|emb|CCP91755.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/Ams3]
gi|440916230|emb|CCP92647.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/Canada1]
gi|440917123|emb|CCP93540.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/Ams4]
gi|440918014|emb|CCP94431.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis L2b/Ams5]
Length = 450
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASD 71
>gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis 70]
gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis 70s]
gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis D(s)2923]
gi|385245762|ref|YP_005814585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis E/150]
gi|386263112|ref|YP_005816391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis Sweden2]
gi|389858451|ref|YP_006360693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis F/SW4]
gi|389859327|ref|YP_006361568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis E/SW3]
gi|389860203|ref|YP_006362443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis F/SW5]
gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis Sweden2]
gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis E/150]
gi|380249523|emb|CCE14819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis F/SW5]
gi|380250398|emb|CCE13930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis F/SW4]
gi|380251276|emb|CCE13041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis E/SW3]
gi|440530141|emb|CCP55625.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis E/SotonE4]
gi|440531041|emb|CCP56525.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis E/SotonE8]
gi|440531932|emb|CCP57442.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis F/SotonF3]
Length = 450
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASD 71
>gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis B/Jali20/OT]
gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis B/TZ1A828/OT]
gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis B/TZ1A828/OT]
gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis B/Jali20/OT]
Length = 450
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASD 71
>gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 641
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVAS----KEIDIEE 315
L +++ + DSR+V G LFV G KTDGH Y +A +GA AVV + I+ ++
Sbjct: 37 LAMQVNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVLENLPPELIEADQ 96
Query: 316 T-LGCKALVIVEDTNLVL 332
T L + ++IV T VL
Sbjct: 97 TDLLSRGVIIVPSTAAVL 114
>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
papyrosolvens DSM 2782]
gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
papyrosolvens DSM 2782]
Length = 459
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
++G+ +V G+ DSR V+ LF+ +G K DGH Y+ + K GA + SK I E
Sbjct: 18 LWGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVCLTSKP--IPE 75
Query: 316 TLGCKALVIVEDT 328
GC A V+V+DT
Sbjct: 76 VAGCSA-VLVDDT 87
>gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase [Thermobaculum
terrenum ATCC BAA-798]
gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
terrenum ATCC BAA-798]
Length = 463
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
DLE E+ I DSR+V GD+F+ G + DGH Y+ +A RGA A+V S+ I+
Sbjct: 21 DLEREVGDITTDSRLVKKGDVFIAIKGERVDGHDYIQDAVSRGAQALVLSRTPSIQIPES 80
Query: 319 CKALVIVEDTNLVL----PHW 335
AL V+DT L L +W
Sbjct: 81 VLALE-VDDTVLALGKLAAYW 100
>gi|431794714|ref|YP_007221619.1| UDP-N-acetylmuramyl tripeptide synthetase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784940|gb|AGA70223.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 495
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L+E+L S + +S+ GD E + GI DSR V GDL+ C G DGH + + ++G
Sbjct: 10 LSEIL--SGIEIMSITGDQETLVRGISMDSRQVQPGDLYACVPGMNVDGHDFAVQVIEKG 67
Query: 302 AVAVVASK 309
AVA++ +
Sbjct: 68 AVALLVER 75
>gi|401564202|ref|ZP_10805114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. FOBRC6]
gi|400189052|gb|EJO23169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. FOBRC6]
Length = 496
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDE-SKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M + + L E + ++P + + EIT I+ DSR V G LFVC G D H ++ A
Sbjct: 1 MRMMKRLQELASLIPNARLSGSDAEITSIERDSRRVGEGALFVCIAGVHVDAHSFIPNAA 60
Query: 299 KRGAVAVVASKE-IDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+ GA A++ +E +D+ E L +++ V D L +P F
Sbjct: 61 RAGARAILTERETVDVPEGL---SVLHVPDLQEALDTIVPYF 99
>gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
morbillorum M424]
gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
morbillorum M424]
Length = 452
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
EITGI DSR V GDLF+ +G DGH Y+ A ++GAVA ++ K+
Sbjct: 24 EITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKGAVASLSLKD 71
>gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis 6276]
gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis 6276s]
gi|440533719|emb|CCP59229.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis Ia/SotonIa1]
gi|440534613|emb|CCP60123.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis Ia/SotonIa3]
Length = 450
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASD 71
>gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
19.5.1]
gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
19.5.1]
Length = 488
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+M L EL+ + K V G ++ I GI+ DSR V G LFVC G DGH ++ EA
Sbjct: 1 MEMVLRELIKDLK--EKRVEGRQDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEA 58
Query: 298 DKRGAVAVVASKEI 311
KRG+ VV K++
Sbjct: 59 IKRGSRVVVVEKDV 72
>gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 495
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGDLFV VG KTDG Y+ +A +G A+VA E
Sbjct: 28 DSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAIVAEAE 68
>gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Desulfovibrio magneticus RS-1]
gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Desulfovibrio magneticus RS-1]
Length = 466
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 238 FKMSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+++L+E+L + V V G+ ++E ++ DSR VS G LFVC G + DGH + E
Sbjct: 1 MRLTLSEILAATGAVGDVGERGNPDIE--AVRIDSRAVSPGSLFVCIPGERLDGHNFAVE 58
Query: 297 ADKRGAVAVVASKEI 311
A +GA AV+A + +
Sbjct: 59 AVSKGAAAVLADRPL 73
>gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL N3-165]
gi|386043180|ref|YP_005961985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Listeria monocytogenes
10403S]
gi|404410094|ref|YP_006695682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes SLCC5850]
gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL N3-165]
gi|345536414|gb|AEO05854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Listeria monocytogenes
10403S]
gi|404229920|emb|CBY51324.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes SLCC5850]
Length = 470
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITGI D+R + +GDLFV VG DGH ++S+A + GAVA K++ T
Sbjct: 36 DVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|402303392|ref|ZP_10822487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. FOBRC9]
gi|400378636|gb|EJP31488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. FOBRC9]
Length = 495
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 242 LAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+ L + + +VP + GD VEI ++ DSR + G LFVC G D H ++ +
Sbjct: 2 MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61
Query: 301 GAVAVVASKE-IDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA AV+ +E +D+ + +++ V D N L +P F
Sbjct: 62 GARAVLTQRENVDVPAGI---SVLHVPDLNAALDMIVPYF 98
>gi|451940871|ref|YP_007461509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bartonella australis Aust/NH1]
gi|451900258|gb|AGF74721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bartonella australis Aust/NH1]
Length = 483
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
+EITGI DSR +S G +FV G++TDG Y+ +A +RGA A++
Sbjct: 19 IEITGISADSRQISPGYVFVALQGKQTDGRKYVYDAVRRGACAII 63
>gi|377831049|ref|ZP_09814037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus mucosae LM1]
gi|377555146|gb|EHT16837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus mucosae LM1]
Length = 462
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Query: 238 FKMSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
KMSLAE+ +V ++ + DLEV T + DSR + AG LF+ +G + DGH Y++
Sbjct: 1 MKMSLAEIAKAIRVQNDIAKWQDLEV--TNVAFDSRALEAGALFIPLMGEQ-DGHKYVAN 57
Query: 297 ADKRGAVAVVASKEIDIEETLGCKALVIVED 327
A + GAVA + + + D+ T + L++V+D
Sbjct: 58 AFENGAVASLWASDHDLPST--DQPLLVVDD 86
>gi|440527468|emb|CCP52952.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis D/SotonD1]
Length = 450
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASD 71
>gi|452957596|gb|EME62960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis decaplanina DSM 44594]
Length = 510
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 259 DLEVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
D E+TG ++ D+R ++ G LFV G K DGH + ++A + GAVAV+A++E+D
Sbjct: 21 DGTAEVTGSVEFDTRQITPGGLFVALPGAKVDGHDFAAQAVESGAVAVLAAREVD 75
>gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Ilyobacter polytropus DSM 2926]
gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Ilyobacter polytropus DSM 2926]
Length = 478
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
+G+++DSR V GD+FV G DGH ++ A + GA AV+ SKEI++
Sbjct: 22 SGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAVENGASAVIGSKEIEV 70
>gi|429726035|ref|ZP_19260845.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. oral taxon 473 str. F0040]
gi|429148076|gb|EKX91089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella sp. oral taxon 473 str. F0040]
Length = 513
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L S V + +GDL I GI DSR V+ LFV G +T+GH ++ +A +
Sbjct: 1 MILKEIL--SHVEILESHGDLNCNICGIDIDSRQVTENHLFVAVKGTQTNGHAFIEKAVE 58
Query: 300 RGAVAVVASKE 310
+GA AVV ++
Sbjct: 59 QGARAVVVCED 69
>gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Corynebacterium efficiens YS-314]
gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Corynebacterium efficiens YS-314]
Length = 528
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 236 PKFKMSLAELLDESKVVPVSVYGDLE--VEITG-IQHDSRVVSAGDLFVCCVGRKTDGHL 292
P +++L ++++ +V + G + +TG ++ DSR V+AG LF+ G + DGH
Sbjct: 24 PMIELTLGQIVE---IVGGELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHE 80
Query: 293 YLSEADKRGAVAVVASKEIDI 313
Y + A +GAVAV+A++ +D+
Sbjct: 81 YATTAIGQGAVAVLAARPVDV 101
>gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
Length = 453
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L ++L+ KV S + EITGI DSR V GDLF+ +G DGH Y+ A ++G
Sbjct: 8 LEKILNAKKVNITS-----DTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESAFEKG 62
Query: 302 AVAVVASKE 310
A A ++ K+
Sbjct: 63 AAASLSLKD 71
>gi|402301048|ref|ZP_10820464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus alcalophilus ATCC 27647]
gi|401723837|gb|EJS97262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus alcalophilus ATCC 27647]
Length = 484
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA---SKEIDI 313
++E+TG+ S+ V G LFV G + DGH Y++EA +RGAVAV+ S +IDI
Sbjct: 21 DIEVTGLHFHSKKVEPGFLFVAISGFEQDGHDYIAEACERGAVAVLGEAKSIQIDI 76
>gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
Length = 484
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
SL E LD VS G L+ +TG D+R V+ G +F G + +G Y++EA +
Sbjct: 5 SLIEELDAEVAKAVSAAGGLDTSVTGFAIDNRKVAPGTVFGAFQGLRVNGEDYITEAVRA 64
Query: 301 GAVAVVASKEIDIEETLGCKA 321
GA+A+VA E ++ + A
Sbjct: 65 GAIAIVARPEAQVDGAIHIAA 85
>gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Listeria marthii FSL S4-120]
gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Listeria marthii FSL S4-120]
Length = 470
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITGI D+R + +GDLFV VG DGH ++S+A + GAVA K++ T
Sbjct: 36 DVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes 08-5578]
gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes 08-5923]
gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes 08-5578]
gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes 08-5923]
Length = 470
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITGI D+R + +GDLFV VG DGH ++S+A + GAVA K++ T
Sbjct: 36 DVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|428222986|ref|YP_007107156.1| UDP-N-acetylmuramyl tripeptide synthetase [Synechococcus sp. PCC
7502]
gi|427996326|gb|AFY75021.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. PCC
7502]
Length = 499
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
I I DSR+V AGDLF+ +G K DG Y+S+A GA+A + + ++E
Sbjct: 34 ILRIVTDSRIVQAGDLFIAMIGSKADGSQYVSQALANGAIAAIIDRSSNLE 84
>gi|340355177|ref|ZP_08677869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sporosarcina newyorkensis 2681]
gi|339622617|gb|EGQ27132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Sporosarcina newyorkensis 2681]
Length = 496
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 240 MSLAELLDESKVVPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M+ ELL V+PV ++ G + IT + DSR V G FVC G +GH ++ A
Sbjct: 1 MNTNELLS---VLPVKTIIGTVPETITDLAVDSRAVQDGGAFVCLKGYTVNGHQFVKSAL 57
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GA ++AS+ I ++E A+V VEDT + F G
Sbjct: 58 MSGARLLIASEPITVDEER--VAVVYVEDTAKAVQQLASKFYG 98
>gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl tripeptide synthetase [Candidatus Desulforudis
audaxviator MP104C]
gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
audaxviator MP104C]
Length = 499
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGC 319
L+V +TGI +DSR G +FV G TDGH ++ +A RGA AV+ +++ + E +
Sbjct: 19 LDVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTRGAAAVLLQQKVPVPEGV-- 76
Query: 320 KALVIVEDTN 329
A +V DT
Sbjct: 77 -AWAVVPDTR 85
>gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus sp. B14905]
gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus sp. B14905]
Length = 493
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 238 FKMSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
++M ELL +P+ + G L ++T I DSR V +FVC G DGH Y +
Sbjct: 4 YEMYAEELL---SALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQK 60
Query: 297 ADKRGAVAVVASKEIDIEETLGCKALVIVEDTN 329
A GA VV +E+ + ET+ A VIV+DT+
Sbjct: 61 AVDGGATIVVTERELPLGETI---AQVIVKDTD 90
>gi|345022978|ref|ZP_08786591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Ornithinibacillus scapharcae TW25]
Length = 490
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M +++LL E + S+Y +L+ +++TGI +S+ V G +FV G + DGH Y+ A
Sbjct: 1 MKISDLLHELNL-DTSLYNELKDIDVTGIADNSKDVKNGYIFVANEGYQLDGHDYIPNAI 59
Query: 299 KRGAVAVVASKEIDIEET 316
+ GA+ V+ K I +ET
Sbjct: 60 QNGAILVIGEKNIPNQET 77
>gi|333924514|ref|YP_004498094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333750075|gb|AEF95182.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 492
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+ L ELL V+ +S G ++E+ GI +DSR V G LFV G K DGH +++ A +
Sbjct: 6 LLLKELLSAIDVIAIS--GPQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNARE 63
Query: 300 RGAVA 304
GA A
Sbjct: 64 AGATA 68
>gi|310658896|ref|YP_003936617.1| UDP-N-acetylmuramyl-tripeptide synthetase [[Clostridium]
sticklandii]
gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [[Clostridium]
sticklandii]
Length = 516
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV-AVVASKE--IDIEETL 317
I GI + S V GDLF C G KTDGH YL +A +GAV AVV S + IDI + L
Sbjct: 26 IQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNKGAVGAVVESIQDNIDIPQYL 82
>gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydophila pecorum E58]
gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Chlamydophila pecorum E58]
Length = 483
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDL-EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M+L ELL + +YG + +E+ DSR V GD+F+ C G + DG+ + ++A
Sbjct: 1 MNLKELLQG---ISAKIYGKVPTLEVRNFTRDSRCVGVGDIFIACRGEQHDGNDFSADAV 57
Query: 299 KRGAVAVVAS 308
+RGA+A+++S
Sbjct: 58 ERGAIAILSS 67
>gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
nigrificans DSM 574]
gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
nigrificans DSM 574]
Length = 492
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+ L ELL V+ +S G ++E+ GI +DSR V G LFV G K DGH +++ A +
Sbjct: 6 LLLKELLSAIDVIAIS--GPQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNARE 63
Query: 300 RGAVA 304
GA A
Sbjct: 64 AGATA 68
>gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
OXCC13]
gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
OXCC13]
Length = 455
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 266 GIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIV 325
G+ D+R+V AG+LFV G D H +L+E K+G AVVA + I E AL IV
Sbjct: 25 GVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGVAAVVAER---IPENYPLPAL-IV 80
Query: 326 EDTNLVL 332
DT L L
Sbjct: 81 ADTRLAL 87
>gi|432350902|ref|ZP_19594238.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
[Rhodococcus wratislaviensis IFP 2016]
gi|430769761|gb|ELB85780.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
[Rhodococcus wratislaviensis IFP 2016]
Length = 481
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 255 SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
++ G E +TGI DSR+V AGD++ GR G + EA RGAVA+++ + D+
Sbjct: 10 TLRGSGEAAVTGINQDSRLVRAGDVYAALPGRHRHGIEFAVEAAARGAVAMLSDRGSDVL 69
Query: 315 ETLGCKALVIVEDTNLVL 332
T V+V+D VL
Sbjct: 70 PT------VVVDDPRRVL 81
>gi|386714290|ref|YP_006180613.1| UDP-N-acetylmuramyl tripeptide synthetase [Halobacillus halophilus
DSM 2266]
gi|384073846|emb|CCG45339.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halobacillus halophilus
DSM 2266]
Length = 503
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 255 SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
++YG ++ + +DSR GD FVC G K DGHL++ +A + GA ++ S+
Sbjct: 15 TIYGPGSQYVSSVVYDSREAEEGDAFVCIAGEKHDGHLFIEQAIQNGANTIIGSE 69
>gi|385240300|ref|YP_005808142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis G/9768]
gi|385243077|ref|YP_005810916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis G/9301]
gi|385246685|ref|YP_005815507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis G/11074]
gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis G/9768]
gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis G/11074]
gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis G/9301]
Length = 450
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASD 71
>gi|339444538|ref|YP_004710542.1| UDP-N-acetylmuramyl tripeptide synthase [Eggerthella sp. YY7918]
gi|338904290|dbj|BAK44141.1| UDP-N-acetylmuramyl tripeptide synthase [Eggerthella sp. YY7918]
Length = 501
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
++ G+ + E++GI + S V GD F C VG TDGH + +A RGA +V +++ +
Sbjct: 14 CTIIGNADDEVSGIAYRSDRVQPGDAFFCIVGFTTDGHSFAQDAINRGAKVLVVQRKVYL 73
Query: 314 EETLGCKALVIVEDTNLVLPHWLPLF 339
+ V+V DT + H F
Sbjct: 74 ADATDVTE-VVVSDTRKAMAHAAANF 98
>gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella timonensis CRIS 5C-B1]
gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella timonensis CRIS 5C-B1]
Length = 483
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M EL+ + K + GD V I+G+ DSR + G LFV G + DGH Y+ +A
Sbjct: 1 MICNELIKDIKCT--DILGDTNVSISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAIL 58
Query: 300 RGAVAVVASK 309
GAVAV+ K
Sbjct: 59 LGAVAVLCEK 68
>gi|340755302|ref|ZP_08691992.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. D12]
gi|421500228|ref|ZP_15947239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
[Fusobacterium sp. D12]
gi|402268642|gb|EJU18008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
Length = 483
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
TG++HDSR ++ G++F+ G DGH ++ A ++GA V SKE+ ++ +G
Sbjct: 26 TGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARLVFVSKEVSCQQGIG 79
>gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfitobacterium hafniense DCB-2]
gi|423073810|ref|ZP_17062547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium hafniense DP7]
gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfitobacterium hafniense DCB-2]
gi|361855432|gb|EHL07408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium hafniense DP7]
Length = 482
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
+ GD +V +G DSR V AG++F VG +TDGH Y+ A ++GA V+ KE
Sbjct: 15 LTGDSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKE 69
>gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
[Limnobacter sp. MED105]
gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
[Limnobacter sp. MED105]
Length = 468
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
IQ DSR+V GDLFVC +G + D H + + K GA A+V ++ +D+
Sbjct: 37 IQTDSRLVEKGDLFVCLIGERFDAHDFAGQVMKSGAAALVTNRVLDL 83
>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
acetoxidans DSM 684]
gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
acetoxidans DSM 684]
Length = 508
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 251 VVPVSVYGDL--EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVAS 308
V V+ G+L +VEI+ + +DSR V G LF G DGH Y A +RGAVAVV
Sbjct: 7 VADVTSQGELAADVEISHLAYDSRCVRPGTLFFALRGVLVDGHDYAKSAVERGAVAVVVE 66
Query: 309 KEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+ +D+ + + V+V+D+ + F
Sbjct: 67 QPVDLPDEI---VQVVVDDSRYAMARCAACF 94
>gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio fructosovorans JJ]
gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio fructosovorans JJ]
Length = 470
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 238 FKMSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+M+L+++L +K V V G+ +E ++ DSR V+ G LFVC G + DGH + +E
Sbjct: 1 MRMTLSDILTATKAVGDVGERGNPVIE--AVRIDSRAVTPGCLFVCIPGERFDGHNFAAE 58
Query: 297 ADKRGAVAVVASKEI 311
A +GA AV+A + +
Sbjct: 59 AVGKGAAAVLADRPL 73
>gi|357419811|ref|YP_004932803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermovirga lienii DSM 17291]
gi|355397277|gb|AER66706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermovirga lienii DSM 17291]
Length = 511
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGC 319
L EI+ HDS+ V+ G +F C G K DGH Y+ A ++GA A++A K + ++ + C
Sbjct: 31 LSQEISDCFHDSKEVTKGSIFACIRGSKFDGHDYVESARQKGASAILAEKTVKVD--VPC 88
Query: 320 KALVIVEDTNLVL 332
++V D VL
Sbjct: 89 ---IVVSDVRSVL 98
>gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
gi|336236154|ref|YP_004588770.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoglucosidasius C56-YS93]
gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
gi|335363009|gb|AEH48689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoglucosidasius C56-YS93]
Length = 490
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
IT I+ DSR V G LF+C G DGH + +A + GAVA++A + +D++
Sbjct: 23 ITSIEMDSRQVKKGALFICIKGFTVDGHDFAKQAVENGAVAIIAERPLDVD 73
>gi|421848811|ref|ZP_16281797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus NBRC 101655]
gi|371460331|dbj|GAB27000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus NBRC 101655]
Length = 461
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 257 YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
G+ V +TGI D+R ++ GDLF+ G +DGH +++ A ++GA AV+A
Sbjct: 19 LGNTSVSVTGISIDTRTLTPGDLFIALKGDNSDGHAHIATALEKGAAAVLA 69
>gi|423720687|ref|ZP_17694869.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoglucosidans TNO-09.020]
gi|383366040|gb|EID43331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoglucosidans TNO-09.020]
Length = 490
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
IT I+ DSR V G LF+C G DGH + +A + GAVA++A + +D++
Sbjct: 23 ITSIEMDSRQVKKGALFICIKGFTVDGHDFAKQAVENGAVAIIAERPLDVD 73
>gi|410617125|ref|ZP_11328101.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
polaris LMG 21857]
gi|410163394|dbj|GAC32239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
polaris LMG 21857]
Length = 471
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
I G+ D+R +S+ DLF+ G DGH ++++A GA+AV+ ++++D TL A +
Sbjct: 30 IQGVSTDTRQISSNDLFIALHGPNFDGHQFITQAQASGAIAVIVNRKVD--TTL---AQI 84
Query: 324 IVEDTNLVL 332
+V+D+ + L
Sbjct: 85 VVQDSKVAL 93
>gi|410460850|ref|ZP_11314518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus azotoformans LMG 9581]
gi|409926492|gb|EKN63658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus azotoformans LMG 9581]
Length = 491
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
I+ I+ DSR V AG LFVC G DGH ++ +A GA A++A +E++
Sbjct: 23 ISSIEMDSRQVRAGSLFVCINGFTVDGHDFVEQAISNGASAILAERELN 71
>gi|333982002|ref|YP_004511212.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylomonas
methanica MC09]
gi|333806043|gb|AEF98712.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylomonas
methanica MC09]
Length = 455
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
+L+D ++ V + G+ ++ +TG+ D+R + GDL++ G++ DGH + +A++ GA
Sbjct: 4 QLIDIARAVQGRLAGE-DLAVTGVGIDTRTLKTGDLYIAIKGQQFDGHDFCDKAEQAGAG 62
Query: 304 AVVASKEIDIEETLGCKALVIVEDTNLVLP----HW---LPLFI 340
A++ SK +D ++V DT L L +W LP+ I
Sbjct: 63 ALLVSKSVD-----SPLPQILVADTRLALAELAGYWRKALPVKI 101
>gi|386736340|ref|YP_006209521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacillus anthracis str. H9401]
gi|384386192|gb|AFH83853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Bacillus anthracis str. H9401]
Length = 383
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKT---DGHLYLSEADKRGAVAVVASKEIDIE 314
+ V+ITG++ DSR ++ G+LF+C G D H ++ +A K GAVA++ ++++IE
Sbjct: 1 MNVKITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE 58
>gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Legionella pneumophila str. Paris]
gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
pneumophila 2300/99 Alcoy]
gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila str. Paris]
gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
pneumophila 2300/99 Alcoy]
Length = 445
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+++A LL +S + +ITG+ D+R + G+LF VG + DGH ++ EA+
Sbjct: 4 ITIASLLSQSC--------QINADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEA 55
Query: 300 RGAVAVVASKEID 312
+GA A V ++ ID
Sbjct: 56 KGASAAVVNRLID 68
>gi|424858580|ref|ZP_18282612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Rhodococcus opacus PD630]
gi|356662267|gb|EHI42566.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Rhodococcus opacus PD630]
Length = 497
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 232 RIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGH 291
R PK + L S ++ G E +TGI DSR+V GD++ GR G
Sbjct: 7 RCTPPKLLREMVRRLGRSA----TLRGSGEAAVTGISQDSRLVRVGDVYAALPGRHRHGI 62
Query: 292 LYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
+ EA RGAVA+++ + D+ T ++V+D VL
Sbjct: 63 EFAVEAAARGAVAMLSDRGSDVLPT------IVVDDPRRVL 97
>gi|357406922|ref|YP_004918846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylomicrobium alcaliphilum 20Z]
gi|351719587|emb|CCE25263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylomicrobium alcaliphilum 20Z]
Length = 453
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 56/96 (58%), Gaps = 9/96 (9%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
K+ L+E+ D V ++G+ +V +TG+ D+R + G+L+ G + DG+ ++ +A
Sbjct: 1 MKLMLSEIAD---YVGGVLFGEDKV-VTGVSIDTRTIETGNLYCAIKGERFDGNDFVGDA 56
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
++ GAVA + S+++++ +V+V DT L L
Sbjct: 57 EQAGAVAAILSRKVEV-----TMPIVVVSDTRLALA 87
>gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. oral taxon 137 str. F0430]
Length = 495
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 242 LAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+ L + + +VP + GD VEI ++ DSR + G LFVC G D H ++ +
Sbjct: 2 MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61
Query: 301 GAVAVVASKE-IDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA AV+ +E +D+ + +++ V D N L +P F
Sbjct: 62 GARAVLTQRENVDVPAGI---SVLRVPDLNAALDIIVPYF 98
>gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl tripeptide synthetase [Conexibacter woesei DSM
14684]
gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
14684]
Length = 491
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +++ ++ VP +VEI + +D+R V G LF C G DGH + +A
Sbjct: 1 MKLLDVMGSAETVPTLATPAGDVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFAPDAVA 60
Query: 300 RGAVAVVASKEIDI 313
RGAVA+V + + +
Sbjct: 61 RGAVALVVERPLGL 74
>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 493
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L + VV V G E+EI+GI +S++++ G+LF+ G K DG Y+ EA
Sbjct: 1 MKLKKVLKDIPVVQVK--GSKEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAIN 58
Query: 300 RGAVAVVA 307
GA A+V
Sbjct: 59 HGATAIVT 66
>gi|345864076|ref|ZP_08816281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345124794|gb|EGW54669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 454
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGC 319
+E + D+R + GDL+V G DGH +L EA+ RGAVA + S E T
Sbjct: 20 MERSFGAVSTDTRTLQPGDLYVALKGPNFDGHEFLYEAELRGAVAALVS-----ERTTAH 74
Query: 320 KALVIVEDTNLVL 332
L++V+DT L L
Sbjct: 75 LPLILVDDTRLAL 87
>gi|345877694|ref|ZP_08829434.1| cell division protein ftsW [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344225297|gb|EGV51660.1| cell division protein ftsW [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 454
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGC 319
+E + D+R + GDL+V G DGH +L EA+ RGAVA + S E T
Sbjct: 20 MERSFGAVSTDTRTLQPGDLYVALKGPNFDGHEFLYEAELRGAVAALVS-----ERTTAH 74
Query: 320 KALVIVEDTNLVL 332
L++V+DT L L
Sbjct: 75 LPLILVDDTRLAL 87
>gi|338175965|ref|YP_004652775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelateligase [Parachlamydia acanthamoebae
UV-7]
gi|336480323|emb|CCB86921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelateligase [Parachlamydia acanthamoebae
UV-7]
Length = 493
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ++L + VV V G E+EI+GI +S++++ G+LF+ G K DG Y+ EA
Sbjct: 1 MKLKKVLKDIPVVQVK--GSKEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAIN 58
Query: 300 RGAVAVVA 307
GA A+V
Sbjct: 59 HGATAIVT 66
>gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Chlamydia muridarum Nigg]
Length = 450
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASD 71
>gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bartonella tribocorum CIP 105476]
gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
[Bartonella tribocorum CIP 105476]
Length = 483
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+EITGI DSR V G +FV G+K DG Y+++A KRGA A+V + +E+
Sbjct: 18 SIEITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIVTDCQAVLED 72
>gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Chlamydia muridarum Nigg]
gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
putative [Chlamydia muridarum Nigg]
Length = 452
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 26 KVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASD 73
>gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Aerococcus viridans ATCC
11563]
gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Aerococcus viridans ATCC
11563]
Length = 495
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 238 FKMSLAELLDESKVVPVS-VYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLS 295
M + ELL++S V + + D+E +EITGI S V+ G LFV G TDG Y+
Sbjct: 1 MNMKVYELLEQSGVTARNPLPADVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYIG 60
Query: 296 EADKRGAVAVVASKEIDIEETL 317
A +RGA +V ++ E +
Sbjct: 61 NAIERGASLIVTESDLTARENV 82
>gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51]
gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 480
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
+ GD +V +G DSR V AG++F VG +TDGH Y+ A ++GA V+ KE
Sbjct: 6 LTGDSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKE 60
>gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Legionella pneumophila str. Lens]
gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Legionella pneumophila str. Lens]
Length = 445
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+++A LL +S + +ITG+ D+R + G+LF VG + DGH ++ EA+
Sbjct: 4 ITIASLLSQSC--------QINADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEA 55
Query: 300 RGAVAVVASKEID 312
+GA A V ++ ID
Sbjct: 56 KGASAAVVNRLID 68
>gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
bacterium 5_1_63FAA]
gi|167710342|gb|EDS20921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. SS2/1]
gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
bacterium SSC/2]
gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 485
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL+ S+ V G +VEI+ + +DSR + G +FVC G DGH ++++A +
Sbjct: 1 MILKELLERSEYTLVQ--GSEDVEISTLVYDSRKIEKGSVFVCISGAAFDGHKFVAQAAE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GA AVV K++++ E L ++ ++T L L + G
Sbjct: 59 LGAAAVVVEKDVEVPENL---TVIKFDNTRLALAEMSAAYFG 97
>gi|429761249|ref|ZP_19293679.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Anaerostipes hadrus DSM 3319]
gi|429184273|gb|EKY25296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Anaerostipes hadrus DSM 3319]
Length = 485
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL+ S+ V G +VEI+ + +DSR + G +FVC G DGH ++++A +
Sbjct: 1 MILKELLERSEYTLVQ--GSEDVEISTLVYDSRKIEKGSVFVCISGAAFDGHKFVAQAAE 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
GA AVV K++++ E L ++ ++T L L + G
Sbjct: 59 LGAAAVVVEKDVEVPENL---TVIKFDNTRLALAEMSAAYFG 97
>gi|427406110|ref|ZP_18896315.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas sp. F0473]
gi|425708951|gb|EKU71990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas sp. F0473]
Length = 496
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 242 LAELLDE-SKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+A+ L+E + +VP + GD EI I+ DSR + G LF C G D H ++ A +
Sbjct: 1 MAKRLEELAALVPGARITGDPAAEIASIERDSRKIETGALFACISGAHVDAHTFIPNAAR 60
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA AV+ +E DI G L + E N L +P F
Sbjct: 61 AGARAVLTQRE-DIAVPDGVSVLRVPE-INEALDAIVPFF 98
>gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida KT2440]
gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida KT2440]
Length = 455
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR VSAG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 26 TGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREV 72
>gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
Length = 484
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL+E + GDL E++ I +DSR V LFVC G DGH ++ +
Sbjct: 1 MKLKQLLNEMNYQVLQ--GDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDFIDQVIN 58
Query: 300 RGAVAVVASKEIDIEETL 317
RGA +V ++ +E +
Sbjct: 59 RGARVIVVEHDVPFQEGI 76
>gi|422415345|ref|ZP_16492302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Listeria innocua FSL J1-023]
gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Listeria innocua FSL J1-023]
Length = 470
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+V ITGI D+R + +GDLFV VG DGH ++S+A + GAVA K++
Sbjct: 36 DVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDV 86
>gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gluconacetobacter hansenii ATCC 23769]
gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gluconacetobacter hansenii ATCC 23769]
Length = 475
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
+ TG+ D+R ++AGD+FV VG +DGH +++ A GA V+A ++ +E+
Sbjct: 34 LRATGVSIDTRTLAAGDIFVALVGENSDGHAHITRALDAGAAVVIAHRDPGVED----AR 89
Query: 322 LVIVEDT 328
+++V+DT
Sbjct: 90 ILLVDDT 96
>gi|339327313|ref|YP_004687006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Cupriavidus necator N-1]
gi|338167470|gb|AEI78525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Cupriavidus necator N-1]
Length = 466
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V GD V+ + + DSR V GDLFV G + D H ++++ RGA AV+ S+E+D
Sbjct: 21 VCGDGAVKFSRVHTDSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSREVDA-- 78
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIGIRRR 345
G A+V DT L L L G RR+
Sbjct: 79 --GVPAIV-APDTRLALGE---LGAGWRRQ 102
>gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. TJI-51]
gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. TJI-51]
Length = 455
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR VSAG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 26 TGVSIDSRSVSAGQLFVALTGPRFDGHDYLADVKAKGAVAALVEREV 72
>gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. SG-1]
gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. SG-1]
Length = 506
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
++G + I+ + +DSR V FVC G K DGH +L +A + GA AV+A + ++ E
Sbjct: 16 LWGQTKRVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDAIRNGA-AVLAGESAEVLE 74
Query: 316 TLGCK----ALVIVEDTNLVLPHWLPLF 339
G K ++VED L LF
Sbjct: 75 KAGRKYPDRTFILVEDARAFLAQLSILF 102
>gi|410633921|ref|ZP_11344561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
arctica BSs20135]
gi|410146581|dbj|GAC21428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
arctica BSs20135]
Length = 469
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
I G+ D+R + + DLF+ G DGH ++ +A+++GAVA++ S+ +D + +
Sbjct: 27 IEGVSTDTRSIQSTDLFLALKGPNFDGHKFIQQAEEKGAVALILSQHVDTK-----LPYI 81
Query: 324 IVEDTNLVL 332
+VEDT L L
Sbjct: 82 LVEDTTLAL 90
>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14673]
gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14673]
Length = 455
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
GD+E + I DSR + DLFV +G K D H +LS+A + GA A + S+ E +
Sbjct: 20 GDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAAASLTSEHDTCPEGI 79
Query: 318 GCKALVIVEDTNLVL 332
AL+ VEDT L
Sbjct: 80 -TGALIRVEDTKKAL 93
>gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14163]
gi|355630350|ref|ZP_09050809.1| hypothetical protein HMPREF1020_04888 [Clostridium sp. 7_3_54FAA]
gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14163]
gi|354818698|gb|EHF03165.1| hypothetical protein HMPREF1020_04888 [Clostridium sp. 7_3_54FAA]
Length = 455
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
GD+E + I DSR + DLFV +G K D H +LS+A + GA A + S+ E +
Sbjct: 20 GDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAAASLTSEHDTCPEGI 79
Query: 318 GCKALVIVEDTNLVL 332
AL+ VEDT L
Sbjct: 80 -TGALIRVEDTKKAL 93
>gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
17244]
gi|169259104|gb|EDS73070.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Anaerofustis stercorihominis DSM 17244]
Length = 481
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVE---ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
M L ++L+ P S+ G+ ++E I I DSR G +FVC VG +TDGH Y+
Sbjct: 1 MKLKDILEG---YPHSLNGNKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYIDS 57
Query: 297 ADKRGAVAVVASKEID 312
A K G + S+E++
Sbjct: 58 ALKLGVKVICHSEELE 73
>gi|424882472|ref|ZP_18306104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
bv. trifolii WU95]
gi|392518835|gb|EIW43567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
bv. trifolii WU95]
Length = 506
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
++I+G+ DSR V+ G+ FV G K DG ++++A RGA V+AS+ +D
Sbjct: 45 LDISGLSSDSRKVTPGNAFVAVAGTKADGARFIADAASRGAAVVIASQAVD 95
>gi|395445255|ref|YP_006385508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida ND6]
gi|388559252|gb|AFK68393.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida ND6]
Length = 455
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR VSAG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 26 TGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREV 72
>gi|430809412|ref|ZP_19436527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cupriavidus
sp. HMR-1]
gi|429498099|gb|EKZ96614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cupriavidus
sp. HMR-1]
Length = 466
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
+ S+ GD + + DSR V GDLFV G + D H +L++ RGA AV+ S++
Sbjct: 16 IAGASISGDAARSFSRVHTDSRTVEPGDLFVALKGERFDAHDFLADVVARGAAAVMVSRK 75
Query: 311 IDIE 314
+D++
Sbjct: 76 VDVD 79
>gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
[Listeria welshimeri serovar 6b str. SLCC5334]
gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 470
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
V ITGI D+R + +GDLFV VG DGH ++S+A + GAVA K++
Sbjct: 37 VVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDV 86
>gi|377821737|ref|YP_004978108.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
sp. YI23]
gi|357936572|gb|AET90131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
sp. YI23]
Length = 476
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 240 MSLAELLDESKVVPVSVY-GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M++ L + + ++P +V GD V I + DSR V AGDLFV G + D H +L +
Sbjct: 1 MTMFTLREAAAMIPGAVLKGDENVAIDRVVTDSRGVQAGDLFVAVKGDRFDAHDFLEQVA 60
Query: 299 KRGAVAVVASKE 310
K GA A + S+E
Sbjct: 61 KSGAAAALVSRE 72
>gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
10507]
gi|225038281|gb|EEG48527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Blautia hydrogenotrophica DSM 10507]
Length = 485
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL++ + GD E+T + +DSR V G LF+C G DGH ++ + K
Sbjct: 1 MKLTALLEDLEYTCCQ--GDENAEVTDVVYDSRKVQKGSLFLCIRGAVVDGHTFVPDVVK 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA +V ++++ E + +++V+DT + + G
Sbjct: 59 KGAGVLVVEEKVEAPEHV---TVILVKDTRYAMACISAAYFG 97
>gi|397697092|ref|YP_006534975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin [Pseudomonas
putida DOT-T1E]
gi|421522853|ref|ZP_15969493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas putida LS46]
gi|397333822|gb|AFO50181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin [Pseudomonas
putida DOT-T1E]
gi|402753346|gb|EJX13840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas putida LS46]
Length = 455
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR VSAG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 26 TGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREV 72
>gi|386013735|ref|YP_005932012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida BIRD-1]
gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida BIRD-1]
Length = 455
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR VSAG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 26 TGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREV 72
>gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfonatronospira thiodismutans ASO3-1]
gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfonatronospira thiodismutans ASO3-1]
Length = 462
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI-DIEETLGCKAL 322
+ ++ DSR GDLF C G ++DGH + +A RGA+A+VA +++ I+ T +
Sbjct: 26 VNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGALAIVAHRDLGSIQNT----PV 81
Query: 323 VIVEDTNLVLP----HW 335
+ V+DT L HW
Sbjct: 82 LAVDDTLKALGRLGRHW 98
>gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
F0399]
gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
F0399]
Length = 495
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 242 LAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+ L + + +VP + GD VEI ++ DSR + G LFVC G D H ++ +
Sbjct: 2 MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61
Query: 301 GAVAVVASKE-IDIEETLGCKALVIVEDTNLVLPHWLPLF 339
GA AV+ +E +D+ + +++ V D N L +P F
Sbjct: 62 GARAVLTQRENVDVPAGI---SVLRVPDLNAALDIIVPYF 98
>gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Corynebacterium efficiens YS-314]
gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Corynebacterium efficiens YS-314]
Length = 504
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 264 ITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
+TG ++ DSR V+AG LF+ G + DGH Y + A +GAVAV+A++ +D+
Sbjct: 27 VTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTAIGQGAVAVLAARPVDV 77
>gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria innocua
Clip11262]
gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
innocua Clip11262]
Length = 457
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+V ITGI D+R + +GDLFV VG DGH ++S+A + GAVA K++
Sbjct: 23 DVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDV 73
>gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
gi|212674231|gb|EEB34714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfovibrio piger ATCC 29098]
Length = 473
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
++ LAE++ D V +T + DSR G LFVC G + DGH Y + A
Sbjct: 1 MRLDLAEIVRCLGCARDVKVADGSVTVTSVVTDSREAVPGSLFVCIAGERVDGHDYAARA 60
Query: 298 DKRGAVAVVASKEID 312
++GAVAV+A++ ++
Sbjct: 61 VEQGAVAVLAARPLE 75
>gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl tripeptide synthetase [Exiguobacterium sp.
AT1b]
gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
AT1b]
Length = 492
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
+ +T + DSR V G LFV G DGH Y ++A +RGAVAVV+ + +D+
Sbjct: 27 IVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQAVERGAVAVVSERSLDL 78
>gi|404412939|ref|YP_006698526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes SLCC7179]
gi|404238638|emb|CBY60039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes SLCC7179]
Length = 470
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K++ T
Sbjct: 36 DVVITGVCFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATFWQKDVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|337288493|ref|YP_004627965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermodesulfobacterium sp. OPB45]
gi|334902231|gb|AEH23037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermodesulfobacterium geofontis OPF15]
Length = 471
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVAS---KE 310
+ + GD+ + GI D+RV+ G LF G K DGH + +A ++GA +V S K
Sbjct: 19 ILINGDMGIWFKGISTDTRVIKPGYLFFALKGEKFDGHEFYKDAIEKGAKGLVISRFPKG 78
Query: 311 IDIEETLGCKALVIVEDT 328
IEE ++++V+DT
Sbjct: 79 FKIEEIPKTISIILVKDT 96
>gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
gi|198272802|gb|EDY97071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Bacteroides plebeius DSM 17135]
Length = 485
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+ G +E+ GI DSR+V G +FV G + DGH Y+S+A + GA +V +
Sbjct: 15 IIGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYISKAIENGATVIVCEQ 68
>gi|381199858|ref|ZP_09907004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
yanoikuyae XLDN2-5]
Length = 463
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
++G+ DSR V AGDLFV G TDGH ++ +A +GA + S+ +D L + V
Sbjct: 24 VSGVAFDSREVGAGDLFVAMKGETTDGHKFVDKAFAQGAAGAIVSEPVDYPHVLVADSAV 83
Query: 324 IVE 326
+E
Sbjct: 84 ALE 86
>gi|410465723|ref|ZP_11318938.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981239|gb|EKO37835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfovibrio magneticus str. Maddingley MBC34]
Length = 466
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 238 FKMSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+++L+E+L + V V G+ ++E ++ DSR VS G LFVC G + DGH + +E
Sbjct: 1 MRLTLSEILAATGAVGDVGERGNPDIE--AVRIDSRAVSPGSLFVCIPGERLDGHNFAAE 58
Query: 297 ADKRGAVAVVASKEI 311
A +GA AV+A + +
Sbjct: 59 AVSKGADAVLADRPL 73
>gi|334144433|ref|YP_004537589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalimicrobium cyclicum ALM1]
gi|333965344|gb|AEG32110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalimicrobium cyclicum ALM1]
Length = 485
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 239 KMSLAELLDESKVV-PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+ +L +L + V+ P ++ I+ + DSR V GD+++ G + DGH ++++A
Sbjct: 14 RWTLGQLANWLNVILPAEWQAQADLAISQMVTDSRAVKPGDVYIAIEGTRFDGHRFIAQA 73
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
++GAVA + S + ++++ C +IV DT L
Sbjct: 74 IEQGAVACIVSNKQYAKQSVPC---LIVADTTRAL 105
>gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 459
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKT-DGHLYLSEADKRGAVAVVASKEIDIEETL 317
D + ++TG+ DSR VS GDLFV G + DGH + A + GAVAV+A++ +D+
Sbjct: 21 DPQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPSAVRAGAVAVLAARPLDVPA-- 78
Query: 318 GCKALVIVEDTNLVLPHW 335
++V+D L W
Sbjct: 79 -----IMVDDPLTALGGW 91
>gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
gi|156865018|gb|EDO58449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. L2-50]
Length = 499
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+ GD +VEI I +DSR V LF C VG DGH Y+ +GAV +V K+++
Sbjct: 15 ICGDEDVEIKEIYNDSRKVGEQGLFFCIVGANFDGHAYVKNVIDKGAVCLVVQKDVE 71
>gi|421890630|ref|ZP_16321485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ralstonia solanacearum K60-1]
gi|378963997|emb|CCF98233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ralstonia solanacearum K60-1]
Length = 482
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+ DSR V GDLFV +G + D H +L++ RGA AV+ S+ L A++ V
Sbjct: 33 VTTDSRSVQPGDLFVALIGERFDAHGFLADVVARGAAAVLVSRPPAATLDLSGVAVLTVA 92
Query: 327 DTNLVLPHWLPLFIGIRRR 345
DT + L L G RR+
Sbjct: 93 DTRIALGQ---LAAGWRRQ 108
>gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 496
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA LL +++V GD + EIT I+ DSR G LF C VG D H ++ + + G
Sbjct: 8 LAALLPGARIV-----GDAQTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAG 62
Query: 302 AVAVVASK 309
A AV+ +
Sbjct: 63 ARAVLTER 70
>gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanylligase [Spirochaeta
smaragdinae DSM 11293]
gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Spirochaeta
smaragdinae DSM 11293]
Length = 478
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
V I G+ DSR V G+LFV G + DGH YLSEA + GA AV+ E
Sbjct: 30 VTIDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAARAGASAVLVDHE 78
>gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
[Rhodococcus opacus B4]
gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
-2,6-diaminopimelate ligase [Rhodococcus opacus B4]
Length = 496
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 255 SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
++ G + +TGI DSR+V AGD++ GR G + +EA RGAVA+++ + D+
Sbjct: 26 TLCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASRGAVAMLSDRTSDVL 85
Query: 315 ETL 317
T+
Sbjct: 86 PTI 88
>gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis D/UW-3/CX]
gi|385241226|ref|YP_005809067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis G/11222]
gi|385243963|ref|YP_005811809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis D-EC]
gi|385244843|ref|YP_005812687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis D-LC]
gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia
trachomatis D/UW-3/CX]
gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis G/11222]
gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis D-EC]
gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis D-LC]
gi|440525684|emb|CCP50935.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis K/SotonK1]
gi|440528360|emb|CCP53844.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis D/SotonD5]
gi|440529251|emb|CCP54735.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis D/SotonD6]
gi|440532825|emb|CCP58335.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis G/SotonG1]
Length = 450
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR V GD+F G +T GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASD 71
>gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
Length = 487
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
EI GI+ DSR V G LFV G +TDGH ++ +A + GA AVV + +++
Sbjct: 24 EIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFIGQAVENGAAAVVGEEALEL 74
>gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl tripeptide synthetase [Kyrpidia tusciae DSM
2912]
gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kyrpidia tusciae DSM
2912]
Length = 500
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +L+ S ++ V V G++ VE+T + DSR G LF+ G DGH ++ EA
Sbjct: 1 MRLQDLV--SALLHVRVVGEISAVEVTDVTADSRTAGPGSLFIALRGHTVDGHAFVDEAR 58
Query: 299 KRGAVAVVASKEID 312
+ GAVA V +D
Sbjct: 59 RSGAVAAVVEDCLD 72
>gi|390954608|ref|YP_006418366.1| UDP-N-acetylmuramyl tripeptide synthetase [Aequorivita
sublithincola DSM 14238]
gi|390420594|gb|AFL81351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aequorivita
sublithincola DSM 14238]
Length = 487
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
KV SV G+ V I+ ++ DSR VS D+F+ G +DGH ++ +A +GA+A++
Sbjct: 10 KVTIESVVGNTSVAISNLEFDSRKVSLNDVFIAIKGTLSDGHQFIKKAANQGALAIIC 67
>gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pomorum DM001]
gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pomorum DM001]
Length = 461
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 257 YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
G+ V +TGI D+R ++ GDLF+ G +DGH +++ A ++GA AV+A E
Sbjct: 19 LGNAPVSVTGISIDTRSLAPGDLFIALKGDNSDGHAHIATALEKGAAAVLAHS----AEG 74
Query: 317 LGCKALVIVEDTNLVL 332
L +++V DT L L
Sbjct: 75 LTDPRILLVSDTMLGL 90
>gi|339625013|ref|ZP_08660802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Fructobacillus fructosus KCTC 3544]
Length = 445
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+ G V +TG+ DSR V GDLFV VG + DGH Y+ A +GA AV+A++
Sbjct: 16 IQGTETVSVTGVSFDSRKVQPGDLFVALVG-ENDGHDYIQMAMDKGASAVLAAE 68
>gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-01]
gi|384042888|ref|YP_005481632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-12]
gi|384051405|ref|YP_005478468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-03]
gi|384054512|ref|YP_005487606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-07]
gi|384057747|ref|YP_005490414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-22]
gi|384060388|ref|YP_005499516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-26]
gi|384063680|ref|YP_005484322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-32]
gi|384119689|ref|YP_005502313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-01]
gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-03]
gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-07]
gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-22]
gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-26]
gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-32]
gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Acetobacter pasteurianus IFO 3283-12]
Length = 461
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 257 YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
G+ V +TGI D+R ++ GDLF+ G +DGH +++ A ++GA A++A
Sbjct: 19 LGNTSVSVTGISIDTRTLTHGDLFIALKGDNSDGHAHITTALEKGAAAILA 69
>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Coprobacillus sp. 29_1]
gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Coprobacillus sp. 29_1]
Length = 449
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M + E+++ + +S GD+E ++ G D+R + +G++++ VG DGH Y+++A
Sbjct: 1 MQIKEIIEATNGQLLS--GDMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYIAQAFN 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
GA +++ + ++ + K +++V+DT
Sbjct: 59 LGASSIITAHKVHYPD----KNVILVKDT 83
>gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Actinomyces sp. oral taxon 180 str. F0310]
gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Actinomyces sp. oral taxon 180 str. F0310]
Length = 465
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 264 ITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+TG + DSR SAG L+V G DGH ++ A +RGAVAV+A +E +EE + A
Sbjct: 23 VTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERGAVAVIAERE--LEEAV---AQ 77
Query: 323 VIVEDTNLVL 332
+IVED+ L
Sbjct: 78 IIVEDSTRAL 87
>gi|421851841|ref|ZP_16284533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371479860|dbj|GAB29736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 461
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 257 YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
G V +TGI D+R ++ GDLFV G +DGH +++ A ++GA AV+A
Sbjct: 19 LGHTSVSVTGISIDTRTLTPGDLFVALKGDNSDGHAHIATALEKGAAAVLA 69
>gi|348030104|ref|YP_004872790.1| D-alanine:D-alanine-adding enzyme [Glaciecola nitratireducens
FR1064]
gi|347947447|gb|AEP30797.1| D-alanine:D-alanine-adding enzyme [Glaciecola nitratireducens
FR1064]
Length = 469
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
E++I G+ D+R + GDLF+ VG D H +L +A ++GA AV+ ++ +D C
Sbjct: 24 ELQIKGVSTDTRTLEPGDLFIALVGPNHDAHEHLFKALEKGAAAVIVNRLVD------CP 77
Query: 321 A-LVIVEDTNLVL 332
L++V+DT + L
Sbjct: 78 LPLILVDDTKIAL 90
>gi|337748310|ref|YP_004642472.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
mucilaginosus KNP414]
gi|336299499|gb|AEI42602.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
mucilaginosus KNP414]
Length = 496
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 240 MSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL +K + VS + G E E+ G+Q DSR V GDLF+C G DGH Y + A
Sbjct: 1 MQLKEL---AKQLAVSRILGRAETEVKGLQTDSRKVVPGDLFICIPGLVADGHDYAAAAA 57
Query: 299 KRGAVAVVASKEID 312
+RGA A+VA +E+D
Sbjct: 58 RRGAAALVAERELD 71
>gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Yersinia enterocolitica W22703]
Length = 298
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 28 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVA 65
>gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio salexigens DSM 2638]
gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio salexigens DSM 2638]
Length = 463
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
K++L EL +E + + ++EI ++ DSR+V GD+F C G DGH ++ +A
Sbjct: 1 MKLTLCEL-EEQLMGSSDLPSAADIEIAAVRIDSRLVKKGDVFFCIEGENFDGHNFVQQA 59
Query: 298 DKRGAVAVVASK 309
GAVAVV S+
Sbjct: 60 FDAGAVAVVVSQ 71
>gi|386725949|ref|YP_006192275.1| UDP-N-acetylmuramyl tripeptide synthetase [Paenibacillus
mucilaginosus K02]
gi|384093074|gb|AFH64510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
mucilaginosus K02]
Length = 496
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 240 MSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL +K + VS + G E E+ G+Q DSR V GDLF+C G DGH Y + A
Sbjct: 1 MQLKEL---AKQLAVSRILGRAETEVKGLQTDSRKVVPGDLFICIPGLVADGHDYAAAAA 57
Query: 299 KRGAVAVVASKEID 312
+RGA A+VA +E+D
Sbjct: 58 RRGAAALVAERELD 71
>gi|333999268|ref|YP_004531880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Treponema primitia ZAS-2]
gi|333739254|gb|AEF84744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Treponema primitia ZAS-2]
Length = 527
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
ITG+++DSR V G+LF G TDGH ++ +A +RGA A++ E+
Sbjct: 30 ITGLEYDSRKVKPGNLFFALPGLHTDGHRFIPDAIQRGAAAILYQDEL 77
>gi|398847756|ref|ZP_10604644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. GM84]
gi|398251259|gb|EJN36528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. GM84]
Length = 455
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+V TG+ DSR V+AG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 22 DVSFTGVSIDSRSVAAGQLFVALAGPRFDGHDYLADVKDKGAVAALVEREV 72
>gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
proteobacterium IMCC1989]
gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
proteobacterium IMCC1989]
Length = 473
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI---DIEETLG 318
V + + ++R +S GDLFV G + DGH +++ A +GA+A+V KEI D+ + L
Sbjct: 25 VNFSSVSINTRTMSVGDLFVAIKGDQFDGHQFVANAQNQGAIALVVEKEIVDSDLPQWL- 83
Query: 319 CKALVIVEDTNLVLPH 334
V DT L L H
Sbjct: 84 ------VGDTTLALGH 93
>gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia ruckeri ATCC 29473]
gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia ruckeri ATCC 29473]
Length = 490
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGDLFV VG +TDG Y+ +A +G AV+A E
Sbjct: 23 DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAE 63
>gi|433463630|ref|ZP_20421177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Halobacillus sp. BAB-2008]
gi|432187280|gb|ELK44590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Halobacillus sp. BAB-2008]
Length = 510
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G +E I + +DSR V GD FVC G DGH Y+ +A GA ++ + +I +
Sbjct: 18 GPVEQRIVDVVYDSREVKDGDAFVCIAGEHLDGHRYIKQAISNGARTIIGTDAGEIHTYV 77
Query: 318 G---CKALVIVEDTNLVLPHWL 336
+ VIVED+ L W+
Sbjct: 78 HDYPYHSFVIVEDSREALA-WM 98
>gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas protegens Pf-5]
gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas protegens Pf-5]
Length = 455
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVI 324
+G+ DSR + AG LF+ G + DGH YL+E +GAVA + +E+ + TL ++
Sbjct: 26 SGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVP-DSTL---PQLL 81
Query: 325 VEDTNLVL 332
V+DT L L
Sbjct: 82 VKDTRLAL 89
>gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 519
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
KM+ +LL E +++ V GD IT + +DSR V G +FV G TDGH ++ A
Sbjct: 25 KMNYRDLLTEEEILEVR-NGDRTEAITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAI 83
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
++GA +V + D+ + V D +L H F G
Sbjct: 84 EQGAAVIV--HQADLARYHDDVVYLKVTDCRRLLGHIASRFFG 124
>gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
Length = 496
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 249 SKVVPVSVYGDLEVEI-TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
S + +V GD + +I T + DSR G LF+C VG TDGH Y+ +A GA AV+
Sbjct: 10 SHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLGAEAVLV 69
Query: 308 SKEI 311
K++
Sbjct: 70 EKDV 73
>gi|352684905|ref|YP_004896890.1| UDP-N-acetylmuramyl tripeptide synthetase [Acidaminococcus
intestini RyC-MR95]
gi|350279560|gb|AEQ22750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
intestini RyC-MR95]
Length = 489
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 249 SKVVPVSVYGDLEVEI-TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
S + +V GD + +I T + DSR G LF+C VG TDGH Y+ +A GA AV+
Sbjct: 3 SHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLGAEAVLV 62
Query: 308 SKEI 311
K++
Sbjct: 63 EKDV 66
>gi|350564696|ref|ZP_08933513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalimicrobium aerophilum AL3]
gi|349777715|gb|EGZ32078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thioalkalimicrobium aerophilum AL3]
Length = 485
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LAE L+ ++P ++ + + DSR V GD+++ G + DGH ++++A ++G
Sbjct: 20 LAEWLN--VILPTKWQAQADLAVAQMVTDSRAVMPGDVYIAIEGTRFDGHRFIAQAIEQG 77
Query: 302 AVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
AVA + S + ++T+ C ++V DT L
Sbjct: 78 AVACIISNKNYAKQTVPC---LLVSDTTRAL 105
>gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
ligase [Dickeya dadantii 3937]
gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
ligase [Dickeya dadantii 3937]
Length = 494
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGDLFV VG KTDG Y+ +A +G AVVA +
Sbjct: 28 DSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVAQAD 68
>gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Verrucomicrobium spinosum DSM 4136]
Length = 507
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+ G L+VE+ G+ +DSR+V G +F G K+DGH ++ +A GAVA+VA
Sbjct: 16 ISGGLDVEVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPKALAEGAVAIVA 67
>gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Corynebacterium ammoniagenes DSM 20306]
gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Corynebacterium ammoniagenes DSM 20306]
Length = 511
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 259 DLEVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
D + +TG ++ DSR V+ G LF+C G K DGH + +A ++GAVAV+A++E+ +
Sbjct: 22 DPDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAEKAIEQGAVAVLAAREVGV 77
>gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Pseudomonas entomophila L48]
gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Pseudomonas
entomophila L48]
Length = 455
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR V AG LFV G + DGH YL++ +GAVA + +EI
Sbjct: 26 TGVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREI 72
>gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
prausnitzii SL3/3]
Length = 492
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +L++ VP + V G L+ EI I +DSR + G LFVC VG + D H + ++
Sbjct: 1 MKLEQLMEG---VPFTLVQGSLDTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFAADCA 57
Query: 299 KRGAVAVVASKEIDI 313
+G A+V +ID+
Sbjct: 58 AKGVSALVIQHDIDL 72
>gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL J1-194]
gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL J1-194]
Length = 470
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 37 VVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPKDFP 94
Query: 322 LVIVEDTNLVL 332
+++VEDT L L
Sbjct: 95 VILVEDTLLAL 105
>gi|405752074|ref|YP_006675539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes SLCC2378]
gi|424713734|ref|YP_007014449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes serotype 4b str. LL195]
gi|404221274|emb|CBY72637.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes SLCC2378]
gi|424012918|emb|CCO63458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes serotype 4b str. LL195]
Length = 470
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 36 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPKDF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|422349888|ref|ZP_16430776.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Sutterella wadsworthensis 2_1_59BFAA]
gi|404657737|gb|EKB30619.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Sutterella wadsworthensis 2_1_59BFAA]
Length = 450
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
L +LL+ + V V+ GD G D+R V AG++FV G + DGH ++ A +
Sbjct: 3 CLQQLLEALEPVVVAAAGDFSQSYEGFSTDTRTVKAGNVFVALSGERFDGHDFVVGAAEA 62
Query: 301 GAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRRIWQ 348
GAV + +++D T ++V D+ L G+ + W+
Sbjct: 63 GAVCAIVERKVDAAIT-----QIVVTDSGLAF--------GLAAKAWR 97
>gi|397689321|ref|YP_006526575.1| UDP-N-acetylmuramyl tripeptide synthase [Melioribacter roseus P3M]
gi|395810813|gb|AFN73562.1| UDP-N-acetylmuramyl tripeptide synthase [Melioribacter roseus P3M]
Length = 489
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL+ +V V+ + E EIT I DSR V+ LF G KTDGH ++ +A
Sbjct: 1 MKLNELLNNVRVKQVTGNAE-EKEITNISIDSRNVNENSLFFAIEGFKTDGHKFIQDALN 59
Query: 300 RGAVAVVASKEIDIEETL---GCKALVIVEDTNLVLPHWLPLFIG 341
+G AVV + + + ++VED+ L + F G
Sbjct: 60 KGVRAVVLQNPAALPDQIFEHYSAVKIVVEDSRKALAEFSDRFFG 104
>gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes HPB2262]
gi|405749209|ref|YP_006672675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes ATCC 19117]
gi|424822583|ref|ZP_18247596.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes str. Scott A]
gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes HPB2262]
gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes str. Scott A]
gi|404218409|emb|CBY69773.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes ATCC 19117]
Length = 470
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 37 VVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPKDFP 94
Query: 322 LVIVEDTNLVL 332
+++VEDT L L
Sbjct: 95 VILVEDTLLAL 105
>gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL R2-503]
gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL R2-503]
Length = 447
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 13 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPMDF 70
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 71 PVILVEDTLLAL 82
>gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Solibacter usitatus Ellin6076]
gi|122251654|sp|Q01Q43.1|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Solibacter usitatus Ellin6076]
Length = 494
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Query: 240 MSLAELLDESKVVPVSVYGDL-EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M+L E+L K+ P + +L + E+TG+ +DSR V+ G LF G K DG + ++A
Sbjct: 1 MNLGEILSSVKL-PRPLAPELAQTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADAL 59
Query: 299 KRGAVAVV---------ASKEIDIEETLGCKALVIVEDT 328
RGAVAV+ A++ I +E G AL + T
Sbjct: 60 ARGAVAVISESLAPPDLAARWIQVEH--GRHALALAART 96
>gi|392426980|ref|YP_006467974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus acidiphilus SJ4]
gi|391356943|gb|AFM42642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus acidiphilus SJ4]
Length = 477
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 249 SKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+++ ++YGD +EI G DSR G++F G + DGH Y+ A K GA V+A
Sbjct: 10 AQITKGTLYGDSNIEIRGCILDSRQAQGGEMFFALPGERVDGHDYMDAAWKNGAALVIA 68
>gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl tripeptide synthetase [Opitutus terrae PB90-1]
gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
Length = 499
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
L++ E+++V +V G L+ I+G+ DSR V G+LF G + DG ++ EA RG
Sbjct: 5 LSDYFGEAEIV--AVKGSLDRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRG 62
Query: 302 AVAVVASK 309
AVA+V K
Sbjct: 63 AVAIVTQK 70
>gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leeuwenhoekiella blandensis MED217]
gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Leeuwenhoekiella blandensis MED217]
Length = 487
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV SV G+ V + I DSR V D+FV G ++DGH ++ +A+++GA+A++ +
Sbjct: 10 KVTLESVTGNPNVPVNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKKAEEQGAIAIICEQ 69
>gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
ligase [Sorangium cellulosum So ce56]
gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
ligase [Sorangium cellulosum So ce56]
Length = 534
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 231 ARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDG 290
A + E + + L ++L E +S G ++ +TG+ DSR V GD+FV G + G
Sbjct: 9 ASLAEVELALRLGDVLREIPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHG 68
Query: 291 HLYLSEADKRGAVAVVASKEIDIEETLGCK 320
++ EA RGA AV+ ++ +TLG
Sbjct: 69 ERFIPEAVARGARAVIVARG-SAADTLGAA 97
>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
ferrireducens T118]
gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodoferax ferrireducens T118]
Length = 480
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 243 AELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGA 302
A L +++V V+ +V I + D+R ++ GDLFV G D H +L++A +GA
Sbjct: 8 ASWLGNARLVNVTGTDGADVLIERVHTDTRTLAPGDLFVALRGEHFDAHDFLAQAKAQGA 67
Query: 303 VAVV--ASKEIDIEETLGCKAL--VIVEDTNLVL 332
VA V AS D+E L L ++V DT L L
Sbjct: 68 VAAVCQASDAGDVEAKLRAVGLPGLLVPDTKLAL 101
>gi|436840225|ref|YP_007324603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169131|emb|CCO22497.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 463
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 238 FKMSLAEL---LDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYL 294
K++L EL L S +P +V + I ++ DSR+VS GD+F C G DGH +
Sbjct: 1 MKLTLCELEEQLMGSSDIPCAV----DTAIASVRIDSRLVSKGDVFFCIEGNNFDGHNFA 56
Query: 295 SEADKRGAVAVVASKEIDIEETLGCKALVIVEDT 328
A GAVAVV S+ + L K +++V DT
Sbjct: 57 QAALDAGAVAVVVSQFL---PELDGKPVIMVRDT 87
>gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ralstonia solanacearum PSI07]
gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ralstonia solanacearum PSI07]
Length = 482
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+ DSR V GDLFV +G + D H +L + RGA AV+ S+ + L A++ V
Sbjct: 33 VTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPLAGALDLSGVAVLTVA 92
Query: 327 DTNLVLPHWLPLFIGIRRR 345
DT + L L G RR+
Sbjct: 93 DTRIALGQ---LAAGWRRQ 108
>gi|417317093|ref|ZP_12103719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes J1-220]
gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes J1-220]
Length = 457
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 24 VVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPKDFP 81
Query: 322 LVIVEDTNLVL 332
+++VEDT L L
Sbjct: 82 VILVEDTLLAL 92
>gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Dickeya zeae Ech1591]
gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591]
Length = 494
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGDLFV VG KTDG Y+ +A +G AVVA +
Sbjct: 28 DSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVAAVVAQAD 68
>gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes str. 4b H7858]
gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL N1-017]
gi|404280406|ref|YP_006681304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes SLCC2755]
gi|404286264|ref|YP_006692850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405754932|ref|YP_006678396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes SLCC2540]
gi|406703631|ref|YP_006753985.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes L312]
gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes str. 4b H7858]
gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL N1-017]
gi|404224132|emb|CBY75494.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes SLCC2540]
gi|404227041|emb|CBY48446.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes SLCC2755]
gi|404245193|emb|CBY03418.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|406360661|emb|CBY66934.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes L312]
Length = 470
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 37 VVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPMDFP 94
Query: 322 LVIVEDTNLVL 332
+++VEDT L L
Sbjct: 95 VILVEDTLLAL 105
>gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes serotype 4b str. F2365]
gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes serotype 4b str. F2365]
Length = 457
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 23 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPKDF 80
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 81 PVILVEDTLLAL 92
>gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes FSL J1-175]
Length = 457
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 24 VVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPKDFP 81
Query: 322 LVIVEDTNLVL 332
+++VEDT L L
Sbjct: 82 VILVEDTLLAL 92
>gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl tripeptide synthetase [Exiguobacterium
sibiricum 255-15]
gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
sibiricum 255-15]
Length = 487
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+LAEL++ + +E +T + DSR V G LFV G DGH Y +A+
Sbjct: 1 MNLAELIEVIQTQKTERM--VEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEA 58
Query: 300 RGAVAVVASKEIDI 313
+GAVA+V+ + +D+
Sbjct: 59 QGAVAIVSERLLDV 72
>gi|350545042|ref|ZP_08914557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
pimelate--D-alanyl-D-alanine ligase [Candidatus
Burkholderia kirkii UZHbot1]
gi|350527184|emb|CCD38737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
pimelate--D-alanyl-D-alanine ligase [Candidatus
Burkholderia kirkii UZHbot1]
Length = 476
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 240 MSLAELLDESKVVPVSVY-GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M++ L D ++P ++ GD + I I DSR V AGDLFV G + D H +L +
Sbjct: 1 MTMFTLRDAVAMIPGAMLDGDENIAIERIFTDSRGVQAGDLFVAVKGERFDAHDFLDQVA 60
Query: 299 KRGAVAVVASKE 310
K GA AV+ S++
Sbjct: 61 KSGAAAVLVSRD 72
>gi|344169147|emb|CCA81470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [blood
disease bacterium R229]
Length = 482
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+ DSR V GDLFV +G + D H +L + RGA AV+ S+ + L A++ V
Sbjct: 33 VTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPLAGALDLSGVAVLTVA 92
Query: 327 DTNLVLPHWLPLFIGIRRR 345
DT + L L G RR+
Sbjct: 93 DTRIALGQ---LAAGWRRQ 108
>gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Actinomyces odontolyticus F0309]
gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Actinomyces odontolyticus F0309]
Length = 465
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 252 VPVSVYGDL---EVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+ V+V G L +V +TG + DSR AG L+V G DGH ++S A RGAVAV+
Sbjct: 8 IAVAVSGRLVGNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIV 67
Query: 308 SKEIDIEETLGCKALVIVEDTNLVL 332
E+D T ++VED+ L
Sbjct: 68 EHEVDEAVT-----QIVVEDSTEAL 87
>gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
ligase [Candidatus Regiella insecticola LSR1]
gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
ligase [Candidatus Regiella insecticola LSR1]
Length = 514
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSR+V+ GD+F+ VG +TDG Y+S+A +GA AV+A +
Sbjct: 33 DSRLVAKGDVFIALVGHQTDGRHYISQAIAQGATAVIAEAQ 73
>gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|386731610|ref|YP_006205106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes 07PF0776]
gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|384390368|gb|AFH79438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes 07PF0776]
Length = 457
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
V ITG+ D+R + +GDLFV VG DGH ++S+A + GAVA K D+
Sbjct: 24 VVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQK--DVPNPPMDFP 81
Query: 322 LVIVEDTNLVL 332
+++VEDT L L
Sbjct: 82 VILVEDTLLAL 92
>gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
M21/2]
gi|158444078|gb|EDP21082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Faecalibacterium prausnitzii M21/2]
Length = 492
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 240 MSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +L++ VP + V G L EI I +DSR + G LFVC VG + D H + ++
Sbjct: 1 MKLEQLMEG---VPFTLVQGSLGTEIADIIYDSRKAAPGLLFVCIVGTQRDSHTFAADCA 57
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
+G A+V +ID+ TL +V VE + +
Sbjct: 58 AKGVSALVIQHDIDL-STLPGVTVVKVESSRYAMA 91
>gi|344172530|emb|CCA85174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ralstonia syzygii R24]
Length = 482
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+ DSR V GDLFV +G + D H +L + RGA AV+ S+ + L A++ V
Sbjct: 33 VTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPLAGTLDLSGVAVLTVA 92
Query: 327 DTNLVLPHWLPLFIGIRRR 345
DT + L L G RR+
Sbjct: 93 DTRIALGQ---LAAGWRRQ 108
>gi|384134171|ref|YP_005516885.1| UDP-N-acetylmuramyl tripeptide synthetase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339288256|gb|AEJ42366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 493
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
I G+ DSR V GDL+V GR+ DGH ++ EA RGAV VV
Sbjct: 20 RIRGVATDSREVRPGDLYVAIRGRRWDGHAFIREAVARGAVCVVG 64
>gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
haemolysans ATCC 10379]
gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
haemolysans ATCC 10379]
Length = 453
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
VEITGI DSR V GDLF+ +G DGH ++ A ++GA A ++ K+
Sbjct: 23 VEITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESAFEKGAAASLSLKD 71
>gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. NRRL B-14911]
gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus sp. NRRL B-14911]
Length = 463
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+++DSR V G LF+C G DGH Y A + GA AV+A +E+ + ++IV+
Sbjct: 3 LENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAERELSLN-----VPVIIVK 57
Query: 327 DTNLVLPHWLPLFIG 341
DT + F G
Sbjct: 58 DTARAMAVLADAFYG 72
>gi|338210534|ref|YP_004654583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Runella slithyformis DSM 19594]
gi|336304349|gb|AEI47451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Runella slithyformis DSM 19594]
Length = 487
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 252 VPV-SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
VPV +V G ++EI I+ DSR V+AG LFV G + DGH ++ + + GA A++
Sbjct: 12 VPVIAVIGSADIEIKSIEFDSRRVAAGSLFVAQKGTQVDGHQFIRQVIEMGAAAILC 68
>gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Thermomicrobium roseum DSM 5159]
gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Thermomicrobium roseum DSM 5159]
Length = 466
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV-AVVASKEIDIEETLGCKALVIV 325
+ HDSR V GDLFV G + DGH ++++A +RGA A+V ++ + LG L++V
Sbjct: 28 VWHDSRTVEPGDLFVALRGERHDGHDFVADAVRRGAAGALVEARWAEELANLGIP-LIVV 86
Query: 326 EDTNLVL----PHWLPLF 339
+DT L +W LF
Sbjct: 87 DDTLAALLRLASYWRRLF 104
>gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
Y412MC10]
gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
Y412MC10]
Length = 494
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L +L S + + G +VEITGI+ DSR V GDLF+C G DGH + ++A
Sbjct: 1 MNLKQL--SSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHQFAAQAAG 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+GA A+V ++++++ VIV+D+ + F
Sbjct: 59 KGAAALVVERKLEVD-----LPQVIVKDSRFAMAGLANAF 93
>gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl tripeptide synthetase [Exiguobacterium sp.
AT1b]
gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
AT1b]
Length = 485
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+TG++ DSR VS+G++F+C G DGH + +A GA AV++ +D++
Sbjct: 22 VTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVISEYPLDLD 72
>gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
17982]
gi|153798680|gb|EDN81100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Actinomyces odontolyticus ATCC 17982]
Length = 465
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 252 VPVSVYGDL---EVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+ V+V G L +V +TG + DSR AG L+V G DGH ++S A RGAVAV+
Sbjct: 8 IAVAVSGRLVGNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIV 67
Query: 308 SKEID 312
E+D
Sbjct: 68 EHEVD 72
>gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl tripeptide synthetase [Chloroflexus aurantiacus
J-10-fl]
gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl tripeptide synthetase [Chloroflexus sp.
Y-400-fl]
gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
J-10-fl]
gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
Y-400-fl]
Length = 509
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+LA LL+ V + G+ V + + +DSR V G LFV G+ +DGH ++ +A R
Sbjct: 5 TLASLLNNVAVQ--RLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIAR 62
Query: 301 GAVAVV 306
GAVAVV
Sbjct: 63 GAVAVV 68
>gi|406884992|gb|EKD32297.1| hypothetical protein ACD_77C00134G0008 [uncultured bacterium]
Length = 488
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL + K++ + GD+ V I G+ DSR GD+F+ G +DGH ++ A
Sbjct: 1 MKLNNLLGKIKILEST--GDIGVLIDGVCFDSRNCRKGDIFIALRGSASDGHQFIDMAVS 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA A+V + E + V VED++ L F G
Sbjct: 59 KGASAIVCE---EFPEGVKNTVFVKVEDSHAALGEIASNFYG 97
>gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299]
gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299]
Length = 462
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGH 291
+VE++GI +DSRVV GD+FVC VG K DGH
Sbjct: 1 DVEVSGIANDSRVVLGGDVFVCIVGEKMDGH 31
>gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermodesulfobium narugense DSM 14796]
gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Thermodesulfobium narugense DSM 14796]
Length = 487
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 240 MSLAELLDESKV----VPVSVYGDL-EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYL 294
M++ EL D+S + + G+ ++ GI ++S+ + G LF G + DGH ++
Sbjct: 1 MTVKELFDKSNIRIEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFI 60
Query: 295 SEADKRGAVAVVASKEIDIEETLGCKA-LVIVEDTNLVLPHW--LPLFIG 341
EA K A+ V K++D T+ ++ L + +T+LV + LF+G
Sbjct: 61 QEAFKNKAIGAVVEKDVDYVNTIKVRSTLQALRETSLVFYDYPFKKLFLG 110
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 497
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
EL+++ + P+ E +I + DSR + AG +FV VG K DGHL++ +A +GA
Sbjct: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
Query: 304 AVVASKEIDIEE 315
A+V S +++
Sbjct: 70 AIVVSSAYSLQD 81
>gi|417094383|ref|ZP_11957936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhizobium etli CNPAF512]
gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhizobium etli CNPAF512]
Length = 486
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
++I+G+ DSR V+ G+ FV G K DG ++++A RGAV +AS+ +D
Sbjct: 25 LDISGLSSDSRKVAPGNAFVAVAGTKADGAGFIADAAARGAVVAIASQPVD 75
>gi|402298667|ref|ZP_10818341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus alcalophilus ATCC 27647]
gi|401726134|gb|EJS99380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus alcalophilus ATCC 27647]
Length = 487
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+EL++ + + + D +E ++ D+R VSA LF+C G DGH + A +
Sbjct: 2 MKLSELMNVIPFLEIDLKADPLIE--KVEMDNREVSANTLFICINGYTVDGHDFAESAVE 59
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
RGAVAV+A + + ++ +++V DT ++
Sbjct: 60 RGAVAVLAERPLALD-----VPVIVVSDTKRMMA 88
>gi|402488382|ref|ZP_10835194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhizobium sp. CCGE 510]
gi|401812773|gb|EJT05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhizobium sp. CCGE 510]
Length = 486
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
++I+G+ DSR V+ G+ FV VG K DG ++++A RGA +AS ID
Sbjct: 25 LDISGLSSDSRHVAPGNAFVAVVGTKADGAGFIADAAGRGAAVAIASHAID 75
>gi|333994350|ref|YP_004526963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Treponema azotonutricium ZAS-9]
gi|333735635|gb|AEF81584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Treponema azotonutricium ZAS-9]
Length = 477
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG--------CKA 321
DSR G LFV VG DGHLYL +A K GA + ++ +LG C+
Sbjct: 37 DSRAAIEGSLFVSLVGASQDGHLYLEDAFKAGAAGAMVARSRLGFASLGIMRIAEKYCRT 96
Query: 322 LVIVEDT 328
LVIV+DT
Sbjct: 97 LVIVDDT 103
>gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter sp. M21]
gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21]
Length = 505
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M LA+LL+ + V+ GD +EI + +DSR V+ G LF G K+DG ++ A K
Sbjct: 1 MKLAQLLNCLEAPEVA--GDAGIEIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVK 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRR 345
GAVA+VA + +V+V D L + F G R
Sbjct: 59 GGAVAIVADRPCACPGV----TVVVVPDPRLAMSLMAAAFYGTPTR 100
>gi|374296731|ref|YP_005046922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium clariflavum DSM 19732]
gi|359826225|gb|AEV68998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium clariflavum DSM 19732]
Length = 460
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G LE E + I DSRVV GD F+ VG K DGH Y+ + ++GA + +++ +
Sbjct: 20 GSLEAEFSNITTDSRVVKNGDFFIPLVGEKFDGHDYILSSFEKGAAGCLTHRDM---SGV 76
Query: 318 GCKALVIVEDT 328
K ++ VEDT
Sbjct: 77 DGKIVIKVEDT 87
>gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 486
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL+ + +S Y +++EI I DSR V G LF G TDG+ ++ EA K
Sbjct: 1 MKLKKLLNH---IGIS-YEGIDLEILSITDDSREVIPGSLFFAITGFSTDGNKFIPEAIK 56
Query: 300 RGAVAVVA 307
+GAVAV++
Sbjct: 57 KGAVAVIS 64
>gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
16973]
gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
16973]
Length = 483
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + P ++ G+ ++EI + DSR + G LF+ G + DGH ++ +A +
Sbjct: 1 MKLKELL--KGIHPTTIIGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFIPKAIE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 QGASAILC 66
>gi|452749598|ref|ZP_21949358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas stutzeri NF13]
gi|452006530|gb|EMD98802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas stutzeri NF13]
Length = 458
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVI 324
T + DSR + G LF+ G + DGH YL++ +GAVA + +E+ E G L I
Sbjct: 26 TAVSTDSRAIEPGQLFIALAGPRFDGHAYLADVAGKGAVAALVEREV---EGAGLPQL-I 81
Query: 325 VEDTNLVL 332
V DT L L
Sbjct: 82 VADTRLAL 89
>gi|357058722|ref|ZP_09119569.1| hypothetical protein HMPREF9334_01286 [Selenomonas infelix ATCC
43532]
gi|355373513|gb|EHG20831.1| hypothetical protein HMPREF9334_01286 [Selenomonas infelix ATCC
43532]
Length = 494
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA LL ++++ GD VEIT I+ DSR V G LFVC G D H ++ A + G
Sbjct: 8 LAALLKDARISG----GD--VEITSIERDSRRVREGALFVCISGAHVDAHSFIPNAARAG 61
Query: 302 AVAVVASKE 310
A A++ +E
Sbjct: 62 ARAILTERE 70
>gi|392948102|ref|ZP_10313718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Lactobacillus pentosus KCA1]
gi|392436752|gb|EIW14660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Lactobacillus pentosus KCA1]
Length = 493
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M ++L++ K V + ++T + D+R V G +F+ VG DGH + +A +
Sbjct: 1 MQASQLINSLKFKQVRPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVGQAIE 60
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA +VASK +D+E ++ VE+T + +F G
Sbjct: 61 KGAKIIVASKPLDVE-----VPVIYVENTERAMAILADVFYG 97
>gi|386823140|ref|ZP_10110295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Serratia plymuthica PRI-2C]
gi|386379927|gb|EIJ20709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Serratia plymuthica PRI-2C]
Length = 495
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
DSR+ +AGDLFV VG +TDG Y+ +A +G AV+A E E+
Sbjct: 28 DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAED 73
>gi|333925575|ref|YP_004499154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Serratia sp. AS12]
gi|333930528|ref|YP_004504106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Serratia plymuthica AS9]
gi|386327399|ref|YP_006023569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Serratia sp. AS13]
gi|421781637|ref|ZP_16218102.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Serratia plymuthica A30]
gi|333472135|gb|AEF43845.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Serratia plymuthica AS9]
gi|333489635|gb|AEF48797.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Serratia sp. AS12]
gi|333959732|gb|AEG26505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Serratia sp. AS13]
gi|407756203|gb|EKF66321.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
[Serratia plymuthica A30]
Length = 495
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
DSR+ +AGDLFV VG +TDG Y+ +A +G AV+A E E+
Sbjct: 28 DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAED 73
>gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sphingobacterium spiritivorum ATCC 33300]
gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Sphingobacterium spiritivorum ATCC 33300]
Length = 484
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 242 LAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+ +L D +PV V G L+VE+T + DSR + G LFV G TDGHL++ +A ++
Sbjct: 1 MIKLKDILHAIPVQEVVGQLDVEVTSLCFDSRKANEGSLFVAVRGVHTDGHLFVEKAIEQ 60
Query: 301 GAVAVV 306
G ++
Sbjct: 61 GCTLIM 66
>gi|384045123|ref|YP_005493140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus megaterium WSH-002]
gi|345442814|gb|AEN87831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bacillus megaterium WSH-002]
Length = 490
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
++IT I+ DSR V G LF+C G DGH + A ++GAVA++A K
Sbjct: 24 IDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKGAVAILAEK 71
>gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
[Ralstonia solanacearum CFBP2957]
gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ralstonia solanacearum CFBP2957]
Length = 482
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+ DSR V GDLFV +G + D H +L++ RGA AV+ S+ L A++ V
Sbjct: 33 VTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAALDLSGVAVLTVA 92
Query: 327 DTNLVLPHWLPLFIGIRRR 345
DT + L L G RR+
Sbjct: 93 DTRIALGQ---LAAGWRRQ 108
>gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl tripeptide synthetase [Ruminococcus albus 7]
gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
Length = 477
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 261 EVEITGIQHDSRV-VSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGC 319
++EITGI D+R V+ G +FVC G+ DGH + +G AVV +++ +E
Sbjct: 17 DMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDAAQQMLDKGCAAVVCERDLGLERQ--- 73
Query: 320 KALVIVEDTNLVLPHWLPLFIG 341
+IV DT P + G
Sbjct: 74 ---IIVTDTRAAFPMLCSAWFG 92
>gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Dokdonia donghaensis MED134]
Length = 487
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+V SV G+ + IT + DSR S D+FV G ++DGH Y+ +A +GA+A++
Sbjct: 10 RVTLESVVGNTAIAITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEKAVAQGALAIIC 67
>gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bdellovibrio bacteriovorus HD100]
gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bdellovibrio bacteriovorus HD100]
Length = 496
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L L +P + + +E+TG+ +D+R+V G +FV G K DGH ++ +A
Sbjct: 1 MKLQHLFSILPGIPENAFS--HIEVTGVFNDARLVVPGSVFVAIRGNKLDGHTFIPDAVA 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVI 324
+GA A+V + I E G + +V+
Sbjct: 59 KGAAALVVEDKAKIPE--GYEGVVV 81
>gi|421082627|ref|ZP_15543510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pectobacterium wasabiae CFBP 3304]
gi|401702864|gb|EJS93104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pectobacterium wasabiae CFBP 3304]
Length = 495
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
E+ + + DSRV +AGDLFV VG K DG Y+ +A +G A+VA E
Sbjct: 19 ELALREMTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAE 68
>gi|386393824|ref|ZP_10078605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfovibrio sp. U5L]
gi|385734702|gb|EIG54900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfovibrio sp. U5L]
Length = 466
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 238 FKMSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+M+L+++L + V V G+ +E ++ DSR V G LFVC G + DGH + +E
Sbjct: 1 MRMTLSDILAATGAVGDVGERGNPVIE--AVRIDSRAVVPGSLFVCVPGARLDGHHFAAE 58
Query: 297 ADKRGAVAVVASKEI 311
A ++GA AV+A + +
Sbjct: 59 AVEKGAAAVLADRPL 73
>gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
ammonificans HB-1]
gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
ammonificans HB-1]
Length = 485
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L LL K VP+ G +VE+ GI DSR V G LF G K +G+ + EA K
Sbjct: 1 MKLPHLL---KGVPLLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFAEEALK 57
Query: 300 RGAVAVVASKEIDIEE-TLGCKALVIVEDTNLVL 332
+GA AVV E+ + K +++VE++ L
Sbjct: 58 KGASAVVTDSRKWFEKLSAAGKPVLLVENSRKAL 91
>gi|357633651|ref|ZP_09131529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio sp. FW1012B]
gi|357582205|gb|EHJ47538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfovibrio sp. FW1012B]
Length = 466
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 238 FKMSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+M+L+++L + V V G+ +E ++ DSR V G LFVC G + DGH + +E
Sbjct: 1 MRMTLSDILAATGAVGDVGERGNPVIE--AVRIDSRAVVPGSLFVCVPGARLDGHHFAAE 58
Query: 297 ADKRGAVAVVASKEI 311
A ++GA AV+A + +
Sbjct: 59 AVEKGAAAVLADRPL 73
>gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus megaterium QM B1551]
gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus megaterium QM B1551]
Length = 487
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
++IT I+ DSR V G LF+C G DGH + A ++GAVA++A K
Sbjct: 21 IDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKGAVAILAEK 68
>gi|443242725|ref|YP_007375950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Nonlabens dokdonensis DSW-6]
gi|442800124|gb|AGC75929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Nonlabens dokdonensis DSW-6]
Length = 487
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V G +V I IQ DSR + GD FV G DGH Y+ +A +GA A++ + D +E
Sbjct: 15 VIGATDVAINQIQFDSRAIEKGDAFVALKGTAVDGHEYIEKAVSQGATAIILEELPDYQE 74
>gi|373458536|ref|ZP_09550303.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
iaminopimelateligase [Caldithrix abyssi DSM 13497]
gi|371720200|gb|EHO41971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
iaminopimelateligase [Caldithrix abyssi DSM 13497]
Length = 488
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
++++G+Q+DSR V G+LFV G +TDGH +L A ++GA + + +
Sbjct: 27 LQVSGVQYDSRKVQVGNLFVAIRGFQTDGHQFLKMAAEKGACCALVEERV 76
>gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Calditerrivibrio nitroreducens DSM 19672]
gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 446
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKA 321
+E + I DSR V G +F G KTDGHLY+ +A +GAV V + E + K
Sbjct: 21 IEYSLITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITDENYYDAN---KP 77
Query: 322 LVIVEDT 328
LV+V+DT
Sbjct: 78 LVLVKDT 84
>gi|407718743|ref|YP_006796148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc carnosum JB16]
gi|407242499|gb|AFT82149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc carnosum JB16]
Length = 441
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 251 VVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
V+ S+ G+ V TG+ DSR+V GDLFV V DGH Y+ A GAVAV+ +
Sbjct: 11 VLHASIQGNGRV--TGVAFDSRLVKPGDLFVALV-SDNDGHQYIQSALNSGAVAVLVDDQ 67
Query: 311 IDIEETLGCKALVIVEDT 328
DI + +IV+DT
Sbjct: 68 HDISSDIPA---IIVKDT 82
>gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Serratia odorifera 4Rx13]
gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Serratia odorifera 4Rx13]
Length = 471
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
DSR+ +AGDLFV VG +TDG Y+ +A +G AV+A E E+
Sbjct: 4 DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAED 49
>gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Bacillus megaterium DSM 319]
gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Bacillus megaterium DSM 319]
Length = 490
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
++IT I+ DSR V G LF+C G DGH + A ++GAVA++A K
Sbjct: 24 IDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKGAVAILAEK 71
>gi|403383504|ref|ZP_10925561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Kurthia sp. JC30]
Length = 490
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M ELL ++ + G L E+ + DSR+V +F+C G DGH + +A
Sbjct: 1 MQTTELL--QRLAQKRIVGTLPEEVRNMAIDSRLVEEKTIFICIKGYTVDGHDFAQQAVD 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
GA +V +E+D++ G A VIV T+ L
Sbjct: 59 SGATVIVTERELDLK---GDVAQVIVRSTDRTL 88
>gi|336113693|ref|YP_004568460.1| UDP-N-acetylmuramyl tripeptide synthetase [Bacillus coagulans 2-6]
gi|335367123|gb|AEH53074.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 2-6]
Length = 485
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
EIT + D+R+V+ LF+C G DGH + +A KRGA A++A K
Sbjct: 21 EITELVQDNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILAEK 67
>gi|427408254|ref|ZP_18898456.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Sphingobium yanoikuyae ATCC 51230]
gi|425713593|gb|EKU76606.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Sphingobium yanoikuyae ATCC 51230]
Length = 463
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
++G+ DSR V AGDLFV G TDGH ++ +A +GA + S+ +D L
Sbjct: 24 VSGVAFDSREVGAGDLFVAMKGETTDGHKFVDKAFAQGAAGAIVSEPVDYPHVL 77
>gi|398385232|ref|ZP_10543256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sphingobium sp. AP49]
gi|397720907|gb|EJK81459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sphingobium sp. AP49]
Length = 463
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
++G+ DSR V AGDLFV G TDGH ++ +A +GA + S+ +D
Sbjct: 24 VSGVAFDSREVGAGDLFVAMKGETTDGHKFVGKAFAQGAAGAIVSEPVD 72
>gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 492
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSV-YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +LL+ VP ++ G L+ EI+ I +DSR + G LFVC VG + D H + ++
Sbjct: 1 MKLEQLLEG---VPFTLAQGSLDTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFAADCA 57
Query: 299 KRGAVAVVASKEIDI 313
+G A+V +ID+
Sbjct: 58 AKGVSALVIQHDIDL 72
>gi|415886179|ref|ZP_11548002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus MGA3]
gi|387588832|gb|EIJ81153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus MGA3]
Length = 461
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+EI G+ DSR + G+LF+ G TDGH ++ +A K+GA A + K++
Sbjct: 25 IEINGVAIDSRKIKIGNLFIPFKGENTDGHRFVEDAIKKGAAAALWQKDV 74
>gi|395784006|ref|ZP_10463854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bartonella melophagi
K-2C]
gi|395425274|gb|EJF91444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bartonella melophagi
K-2C]
Length = 483
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+EITGI DSR V G +FV G K DG Y+++A KRGA +V + +EE C
Sbjct: 18 SIEITGISSDSRQVLPGYVFVALQGNKGDGRQYVNDAIKRGARVIVTDYDCILEEL--CV 75
Query: 321 ALVIVEDTNLVLPHWLPLFIGIRRRI 346
++ V D L F G++ I
Sbjct: 76 PVLRVVDVRHSLAIAAARFYGVQPEI 101
>gi|451335948|ref|ZP_21906512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis azurea DSM 43854]
gi|449421514|gb|EMD26935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Amycolatopsis azurea DSM 43854]
Length = 510
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 259 DLEVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
D E+TG ++ D+R ++ G LF+ G K DGH + + A + GAVAV+A++E+D
Sbjct: 21 DGAAEVTGSVEFDTREITPGGLFIALPGAKVDGHDFAARAVESGAVAVLAAREVD 75
>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
gi|169291945|gb|EDS74078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium spiroforme DSM 1552]
Length = 450
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ EITG DSR VS G +++ +G + DGH ++ A + GA AV++ ++ID E
Sbjct: 15 ICGNSNQEITGFSQDSRKVSPGMMYIPIIGERFDGHDFIKNAFENGASAVISGRDIDDSE 74
Query: 316 TLGCKALVIVEDTNLVL---PHWL 336
+ ++ V+DT L H+L
Sbjct: 75 HI----IIKVKDTLKALQDMAHYL 94
>gi|333376750|ref|ZP_08468486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Dysgonomonas mossii DSM 22836]
gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Dysgonomonas mossii DSM 22836]
Length = 483
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL V+ + G+ ++ +TG+ DSR + G +F+ G + DGHLY+ A +
Sbjct: 1 MKLQDLLKNIDVIEIK--GEQDINVTGVFTDSRKATPGSVFIALKGVQVDGHLYIKNALE 58
Query: 300 RGAVAVVASKEID 312
GA ++ +ID
Sbjct: 59 LGAKVILHENKID 71
>gi|431795711|ref|YP_007222615.1| UDP-N-acetylmuramyl tripeptide synthetase [Echinicola vietnamensis
DSM 17526]
gi|430786476|gb|AGA76605.1| UDP-N-acetylmuramyl-tripeptide synthetase [Echinicola vietnamensis
DSM 17526]
Length = 487
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 255 SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
S GD+EV + I DSR V GD+FV G + DGH Y+ +A GA A+V
Sbjct: 15 STTGDMEVAVKDIVFDSRKVEEGDVFVATKGTQVDGHAYIDKAIASGAKAIVC 67
>gi|429735412|ref|ZP_19269377.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sp. oral taxon 138
str. F0429]
gi|429158920|gb|EKY01446.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sp. oral taxon 138
str. F0429]
Length = 494
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA+LL ++++ GD EIT I+ DSR + G LFVC G D H ++ A + G
Sbjct: 8 LADLLPGARLLG----GD--AEITSIERDSRRIGEGALFVCISGAHVDAHSFIPNAARAG 61
Query: 302 AVAVVASKE-IDIEETLGCKALVIVEDTNLVLPHWLPLF 339
A A++ +E +D+ + L +++ V+D L +P F
Sbjct: 62 ARAILTERETVDVPDGL---SVLHVQDLQAALDVIVPYF 97
>gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 503
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
+TG++ DSR + G+LFV G KTDG LY+ A K+GA AV+ DI
Sbjct: 24 LTGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDI 73
>gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
ferrooxidans DSM 10331]
gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
ferrooxidans DSM 10331]
Length = 487
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 242 LAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+ L D +VP + + GD V I I DSR VS G +F G + DGH ++S+A R
Sbjct: 1 MLTLRDLHGLVPSARLVGDPSVAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIAR 60
Query: 301 GAVAVVASKEIDIE 314
GAVA++ E+ ++
Sbjct: 61 GAVALLVQHEVALD 74
>gi|383756805|ref|YP_005435790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Rubrivivax gelatinosus IL144]
gi|381377474|dbj|BAL94291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Rubrivivax gelatinosus IL144]
Length = 448
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 238 FKMSLAELLDESKVVP-VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
+++LA+ L VP ++ GD + + + D+R + AGDLFV G + DGH +L+
Sbjct: 1 MRLTLAQAL---PFVPGATLVGDGATKFSRVHSDTRTLRAGDLFVALRGERFDGHDFLAS 57
Query: 297 ADKRGAVAVVA 307
A + GAVA +A
Sbjct: 58 AREAGAVAAIA 68
>gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 495
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGDLFV VG K DG Y+ +A +G A+VA E
Sbjct: 28 DSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAE 68
>gi|339451099|ref|ZP_08654469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Leuconostoc lactis KCTC 3528]
Length = 434
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
++TG+ +SR V GDLFV V DGH Y+ +A +RGAVAV+ + DI +
Sbjct: 21 QVTGVSFNSRQVVPGDLFVALVA-DNDGHQYIQDALQRGAVAVLVDDQHDIPNDVPA--- 76
Query: 323 VIVEDTNLVL 332
V+V DT + L
Sbjct: 77 VVVPDTLIAL 86
>gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl tripeptide synthetase [Clostridium
phytofermentans ISDg]
gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
phytofermentans ISDg]
Length = 493
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G ++ EI+ + +DSR V +FVC G +DGH +++E +G+ +VA KE+ + + +
Sbjct: 17 GTVDREISTLCYDSRKVEKDSIFVCITGVVSDGHSFVNEVIAKGSTVIVAEKEVSVPDGV 76
Query: 318 GCKALVIVEDTNLVLPHW 335
L++V +T L +
Sbjct: 77 ---TLLLVSNTREALAYL 91
>gi|403060031|ref|YP_006648248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pectobacterium carotovorum subsp. carotovorum PCC21]
gi|402807357|gb|AFR04995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pectobacterium carotovorum subsp. carotovorum PCC21]
Length = 495
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGDLFV VG K DG Y+ +A +G A+VA E
Sbjct: 28 DSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAE 68
>gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Pectobacterium carotovorum subsp. brasiliensis PBR1692]
Length = 495
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGDLFV VG K DG Y+ +A +G A+VA E
Sbjct: 28 DSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAE 68
>gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia frederiksenii ATCC 33641]
gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia frederiksenii ATCC 33641]
Length = 471
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 4 DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVA 41
>gi|336424010|ref|ZP_08604058.1| hypothetical protein HMPREF0994_00064 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336018558|gb|EGN48297.1| hypothetical protein HMPREF0994_00064 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 490
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+L LL+ V V G E+++ + +DSR ++ G LF+C G DGH ++A ++
Sbjct: 3 ALKTLLENLDVTVVR--GTTELDVPDVVYDSRKITKGCLFICIEGANFDGHSAAAQAVEK 60
Query: 301 GAVAVVASKEIDI 313
GA +V KE+DI
Sbjct: 61 GAAVLVTQKEVDI 73
>gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia kristensenii ATCC 33638]
gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia kristensenii ATCC 33638]
Length = 471
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 4 DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVA 41
>gi|419841082|ref|ZP_14364460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
gi|386906101|gb|EIJ70846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
Length = 483
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
TG++HDSR ++ G++F+ G DGH ++ A ++GA V S+E+ ++ +G
Sbjct: 26 TGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARLVFVSEEVSCQQGIG 79
>gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Serratia odorifera DSM 4582]
gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Serratia odorifera DSM 4582]
Length = 471
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSR+ +AGDLFV VG +TDG Y+ +A +G AV+A E
Sbjct: 4 DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAE 44
>gi|385242152|ref|YP_005809992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis E/11023]
gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis E/11023]
gi|440535508|emb|CCP61018.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis E/Bour]
Length = 450
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G + GHL+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASD 71
>gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus sp. HGF5]
gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Paenibacillus sp. HGF5]
Length = 494
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L +L S + + G +VEITGI+ DSR V GDLF+C G DGH + ++A
Sbjct: 1 MNLKQL--SSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHEFAAQAAD 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+GA A+V ++++++ VIV+D+ + F
Sbjct: 59 KGAAALVVERKLEVD-----LPQVIVKDSRFAMAGLANAF 93
>gi|431804315|ref|YP_007231218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas putida HB3267]
gi|430795080|gb|AGA75275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas putida HB3267]
Length = 455
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR V AG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 26 TGVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREV 72
>gi|386311343|ref|YP_006007399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. palearctica Y11]
gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. palearctica Y11]
Length = 496
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 28 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVA 65
>gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl tripeptide synthetase [Spirochaeta thermophila
DSM 6192]
gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
DSM 6192]
Length = 503
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+ L+ LLD K V GD V + + +DSR V +G LF G TDGH ++ +A
Sbjct: 1 MSLVLSSLLDAIKPEEVRGGGDPRVRL--LAYDSRDVESGALFFALPGLHTDGHRFVEDA 58
Query: 298 DKRGAVAVVASKEI 311
RGAVAVV +E+
Sbjct: 59 LGRGAVAVVHEREL 72
>gi|420257208|ref|ZP_14759974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. enterocolitica WA-314]
gi|404515353|gb|EKA29122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. enterocolitica WA-314]
Length = 495
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 28 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVA 65
>gi|418240065|ref|ZP_12866608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. palearctica PhRBD_Ye1]
gi|433551447|ref|ZP_20507489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica IP 10393]
gi|351780568|gb|EHB22638.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. palearctica PhRBD_Ye1]
gi|431787629|emb|CCO70529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica IP 10393]
Length = 495
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 28 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVA 65
>gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia rohdei ATCC 43380]
gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia rohdei ATCC 43380]
Length = 471
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 4 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVA 41
>gi|224368379|ref|YP_002602542.1| protein MurE [Desulfobacterium autotrophicum HRM2]
gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2]
Length = 514
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
EIT I +DSR V G LF+ G K DGH Y+ +A +RGA AVV + +
Sbjct: 29 EITSIHNDSRDVKPGGLFIAVRGFKIDGHDYVEDALERGAAAVVVQQRV 77
>gi|414154498|ref|ZP_11410816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411453895|emb|CCO08720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 490
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYL 294
M L +LL V VSV G ++EI GI +DSR G LFV G +TDGH+Y+
Sbjct: 1 MLLKQLLQ--AVATVSVEGSQDIEIEGICYDSRQAGPGMLFVAIRGFQTDGHMYI 53
>gi|374312767|ref|YP_005059197.1| UDP-N-acetylmuramyl tripeptide synthetase [Granulicella mallensis
MP5ACTX8]
gi|358754777|gb|AEU38167.1| UDP-N-acetylmuramyl-tripeptide synthetase [Granulicella mallensis
MP5ACTX8]
Length = 504
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 249 SKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
S V + G +++ G+Q+DSR V+AGD+FV G +DG+ ++ A ++GA A++
Sbjct: 8 SGVRVLEAAGSRAIDVRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAAII 65
>gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. enterocolitica 8081]
gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
[Yersinia enterocolitica subsp. enterocolitica 8081]
Length = 490
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 23 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVA 60
>gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum ATCC 824]
gi|337737346|ref|YP_004636793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum DSM 1731]
gi|384458855|ref|YP_005671275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum EA 2018]
gi|21362710|sp|Q97H84.1|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase 1; AltName:
Full=Meso-A2pm-adding enzyme 1; AltName:
Full=Meso-diaminopimelate-adding enzyme 1; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
1
gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium
acetobutylicum ATCC 824]
gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum EA 2018]
gi|336291890|gb|AEI33024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum DSM 1731]
Length = 482
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+ GDL VEI + +DSR V+ LF C G +DGH ++ +A ++GA +V +K
Sbjct: 15 ICGDLNVEIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKGADVIVCTK 68
>gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. palearctica 105.5R(r)]
gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Yersinia enterocolitica subsp. palearctica 105.5R(r)]
Length = 495
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AVVA
Sbjct: 28 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVA 65
>gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida GB-1]
gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
putida GB-1]
Length = 455
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR V AG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 26 TGVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREV 72
>gi|339489245|ref|YP_004703773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas putida S16]
gi|338840088|gb|AEJ14893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
putida S16]
Length = 451
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
TG+ DSR V AG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 22 TGVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREV 68
>gi|373115454|ref|ZP_09529627.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 7_1_58FAA]
gi|371670397|gb|EHO35479.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 7_1_58FAA]
Length = 463
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M++ E++D + +GD+ + ++ DSR + AG LFV VG + DGH Y++ A +
Sbjct: 4 MTIREIMDAVGGKLLGEFGDINRMVGRVETDSRTIHAGSLFVPLVGERFDGHAYINAALE 63
Query: 300 RGAVAVVASKE 310
GA +E
Sbjct: 64 GGAAGCFTQRE 74
>gi|386332329|ref|YP_006028498.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Ralstonia solanacearum Po82]
gi|334194777|gb|AEG67962.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Ralstonia solanacearum Po82]
Length = 482
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+ DSR V GDLFV +G + D H +L++ RGA AV+ S+ L A++ V
Sbjct: 33 VTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDLSGVAVLTVA 92
Query: 327 DTNLVLPHWLPLFIGIRRR 345
DT + L L G RR+
Sbjct: 93 DTRIALGQ---LAAGWRRQ 108
>gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes FSL J2-003]
Length = 457
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITGI D+R + +GDLFV VG DGH ++ +A + GAVA K + T
Sbjct: 23 DVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPT--DF 80
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 81 PVILVEDTLLAL 92
>gi|365845580|ref|ZP_09386345.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavonifractor plautii ATCC 29863]
gi|364559974|gb|EHM37934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavonifractor plautii ATCC 29863]
Length = 463
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M++ E++D + +GD+ + ++ DSR + AG LFV VG + DGH Y++ A +
Sbjct: 4 MTIREIMDAVGGKLLGEFGDINRMVGRVETDSRTIHAGSLFVPLVGERFDGHAYINAALE 63
Query: 300 RGAVAVVASKE 310
GA +E
Sbjct: 64 GGAAGCFTQRE 74
>gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Erysipelotrichaceae bacterium 3_1_53]
gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Erysipelotrichaceae bacterium 3_1_53]
Length = 486
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
++EI G+ DSR A D++ C G DGH ++ + +GA +V SK +E
Sbjct: 12 DIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAKCIVHSKP--VEHMKKGI 69
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
A + VE+ N L LF G
Sbjct: 70 AYIQVENVNRTLNRVASLFYG 90
>gi|421895503|ref|ZP_16325904.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Ralstonia solanacearum MolK2]
gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Ralstonia solanacearum MolK2]
Length = 482
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+ DSR V GDLFV +G + D H +L++ RGA AV+ S+ L A++ V
Sbjct: 33 VTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDLSGVAVLTVA 92
Query: 327 DTNLVLPHWLPLFIGIRRR 345
DT + L L G RR+
Sbjct: 93 DTRIALGQ---LAAGWRRQ 108
>gi|425071640|ref|ZP_18474746.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Proteus
mirabilis WGLW4]
gi|404598498|gb|EKA98968.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Proteus
mirabilis WGLW4]
Length = 460
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
++ I I DSR + LF+ G + D H ++++ ++GAVAV+ +++ID+E C
Sbjct: 27 QLMIKSISTDSRKIDDACLFIALAGERFDAHDFIADVKQKGAVAVLVNRKIDVE----CP 82
Query: 321 ALVIVEDTNLVLPH 334
+IV+DT L + H
Sbjct: 83 Q-IIVKDTRLAMGH 95
>gi|413958946|ref|ZP_11398185.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Burkholderia sp. SJ98]
gi|413941526|gb|EKS73486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Burkholderia sp. SJ98]
Length = 476
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 240 MSLAELLDESKVVPVSVY-GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M++ L + + ++P +V GD + I + DSR V AGDLFV G + D H +L +
Sbjct: 1 MTMFTLREAAAMIPGAVLKGDAGIAIARVVTDSRGVQAGDLFVAVKGDRFDAHDFLDQVA 60
Query: 299 KRGAVAVVASKE 310
K GA A + S++
Sbjct: 61 KSGAAAALVSRD 72
>gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
solanacearum UW551]
gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Ralstonia solanacearum IPO1609]
gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
solanacearum UW551]
gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Ralstonia solanacearum IPO1609]
Length = 482
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 267 IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVE 326
+ DSR V GDLFV +G + D H +L++ RGA AV+ S+ L A++ V
Sbjct: 33 VTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDLSGVAVLTVA 92
Query: 327 DTNLVLPHWLPLFIGIRRR 345
DT + L L G RR+
Sbjct: 93 DTRIALGQ---LAAGWRRQ 108
>gi|373451991|ref|ZP_09543909.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium sp. 3_1_31]
gi|371967423|gb|EHO84894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium sp. 3_1_31]
Length = 487
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
++EI G+ DSR + D++ C G DGH ++ E ++GAV +V +K DIE
Sbjct: 12 DIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAK--DIETMHKGV 69
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
A + VE+ N L F G
Sbjct: 70 AYIKVENVNRTLNMVASKFYG 90
>gi|350566761|ref|ZP_08935402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Peptoniphilus indolicus ATCC 29427]
gi|348661719|gb|EGY78399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Peptoniphilus indolicus ATCC 29427]
Length = 505
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L+D+ S G ++I I+++S V +GDLFV G TDGH Y+ A +
Sbjct: 1 MRLNQLIDD-----FSKLGIENLDIKNIRYNSNDVESGDLFVATKGYVTDGHKYVKNAYE 55
Query: 300 RGAVAVVASKEIDIE 314
+GAV V +D++
Sbjct: 56 KGAVVAVVEDYVDVD 70
>gi|359405540|ref|ZP_09198299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella stercorea DSM 18206]
gi|357558328|gb|EHJ39824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Prevotella stercorea DSM 18206]
Length = 481
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL V+ + G +VE+TG+ DSR + G LFV G + DGH ++ +A +
Sbjct: 1 MKLKELLKNITVLAIK--GSDDVEVTGVNIDSRRIKEGHLFVAMKGTQVDGHKFIPKAVE 58
Query: 300 RGAVAVVA 307
GA AV+
Sbjct: 59 LGAKAVLC 66
>gi|426405105|ref|YP_007024076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bdellovibrio bacteriovorus str. Tiberius]
gi|425861773|gb|AFY02809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
[Bdellovibrio bacteriovorus str. Tiberius]
Length = 496
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+E+TG+ +D+R+V G +FV G K DGH ++ +A +GA A+V + I E G +
Sbjct: 20 HIEVTGVFNDARLVVPGSVFVAIRGSKLDGHTFIPDAVAKGAAALVVEDKAKIPE--GYE 77
Query: 321 ALVI 324
+V+
Sbjct: 78 GIVL 81
>gi|395777880|ref|ZP_10458393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bartonella elizabethae
Re6043vi]
gi|395418189|gb|EJF84516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bartonella elizabethae
Re6043vi]
Length = 483
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+EITGI DSR V G +FV G++ DG Y+++A KRGA A+V E +E+
Sbjct: 18 SMEITGISADSRQVLPGYVFVAVQGKQGDGRDYINDAIKRGACAIVTDCEAVLED 72
>gi|376282766|ref|YP_005156592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis A2497]
gi|385270487|ref|YP_005813647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis A2497]
gi|347975627|gb|AEP35648.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlamydia trachomatis A2497]
gi|371908796|emb|CAX09428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Chlamydia trachomatis A2497]
gi|438690694|emb|CCP49951.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis A/7249]
gi|438691779|emb|CCP49053.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Chlamydia trachomatis A/5291]
gi|438693152|emb|CCP48154.1| putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelateligase/UDP-N-acetylmuramoyl-
tripeptide:D-alanyl-D-alanine ligase [Chlamydia
trachomatis A/363]
Length = 450
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
++TG+ DSR+V GD+F G +T G+L+L +A + GAVA V + +
Sbjct: 24 KVTGVAIDSRLVLPGDVFFALPGNRTSGYLFLKQAAQSGAVAAVVASD 71
>gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 487
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
++EI G+ DSR + D++ C G DGH ++ E ++GAV +V +K DIE
Sbjct: 12 DIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAK--DIETMHKGV 69
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
A + VE+ N L F G
Sbjct: 70 AYIKVENVNRTLNMVASKFYG 90
>gi|374595527|ref|ZP_09668531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gillisia limnaea DSM 15749]
gi|373870166|gb|EHQ02164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Gillisia limnaea DSM 15749]
Length = 487
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 255 SVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+V G V I +Q DSR V D+FV G +DGH Y+++A +GA+A++
Sbjct: 15 AVVGKTSVHINAVQFDSRKVEFNDVFVAVRGTLSDGHEYITKAVNQGALAIIC 67
>gi|389844330|ref|YP_006346410.1| UDP-N-acetylmuramyl tripeptide synthetase [Mesotoga prima
MesG1.Ag.4.2]
gi|387859076|gb|AFK07167.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesotoga prima
MesG1.Ag.4.2]
Length = 498
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
+ ELL S V+ V G+++ E I+ DSR + +LF+C G D HL E ++G
Sbjct: 6 VIELLGNS-VLQVVNPGNVDPEFDHIESDSRGLKERNLFICIKGTNFDSHLIARELQRKG 64
Query: 302 AVAVVASKEIDIEETLGCKALVIVEDTNLV 331
AVA+VA I+ EE + +V V+ + LV
Sbjct: 65 AVALVAEMPIEDEEVV--VPIVYVKSSRLV 92
>gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium butyricum 5521]
gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium butyricum E4 str. BoNT E BL5262]
gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium butyricum 5521]
gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium butyricum E4 str. BoNT E BL5262]
Length = 486
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
G +V+I I +DSR V DLFVC G TDGH Y +A GA +V +++I++
Sbjct: 17 GTEDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYAEKAVLNGAKVIVIQDDVNIDD 74
>gi|423715806|ref|ZP_17690027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bartonella elizabethae
F9251]
gi|395429108|gb|EJF95182.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bartonella elizabethae
F9251]
Length = 483
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+EITGI DSR V G +FV G++ DG Y+++A KRGA A+V E +E+
Sbjct: 18 SMEITGISADSRQVLPGYVFVAVQGKQGDGRDYINDAIKRGACAIVTDCEAVLED 72
>gi|358447179|ref|ZP_09157710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Corynebacterium casei UCMA 3821]
gi|356606949|emb|CCE56067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Corynebacterium casei UCMA 3821]
Length = 511
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 261 EVEITG-IQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
+ +TG ++ DSR V+ G LF+C G K DGH Y +A ++GAVAV+A++ + +
Sbjct: 24 DARVTGFVEFDSRKVTPGGLFLCFPGAKVDGHDYAEKAIEQGAVAVLAARPVGV 77
>gi|354596161|ref|ZP_09014178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Brenneria sp. EniD312]
gi|353674096|gb|EHD20129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Brenneria sp. EniD312]
Length = 495
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGDLFV VG +TDG Y+ +A +G A++A E
Sbjct: 28 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIIAEAE 68
>gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Tepidanaerobacter acetatoxydans Re1]
gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Tepidanaerobacter acetatoxydans Re1]
Length = 482
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 240 MSLAELLDESKVVP--VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M+ EL+ +++P +SV G +V I I ++S+ + G +FV G DGH ++ EA
Sbjct: 1 MNAQELI---QIIPDILSVKGYTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEA 57
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+RGA V+ K +D LG K + V+D+ L F G
Sbjct: 58 LERGAGVVIGEKALD----LGGKLYIRVKDSRKALALSSAWFYG 97
>gi|431794713|ref|YP_007221618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784939|gb|AGA70222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 478
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
GD + + G DSR+V G++F VG K DGH Y+ A ++GA VVA KE
Sbjct: 17 GDSQAKAHGCCIDSRLVKDGNIFFALVGEKVDGHDYIKAAWQKGASVVVAEKE 69
>gi|428204296|ref|YP_007082885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pleurocapsa sp. PCC 7327]
gi|427981728|gb|AFY79328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pleurocapsa sp. PCC 7327]
Length = 452
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
LE TGI D+R++S G++F+ G + DGH ++ A ++GA+A+V +++ +
Sbjct: 25 SLEQLTTGITTDTRLLSPGEIFLALKGERFDGHEFIETAIEKGAIAIVTERDLSV 79
>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
Length = 445
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 249 SKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVAS 308
+K++ S+ G + + DSR + G++F+ G+K D H ++ +A K+GAV V++
Sbjct: 9 AKILKGSLVGSPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGAVGVISE 68
Query: 309 KEIDI 313
+E+D+
Sbjct: 69 REVDV 73
>gi|346314518|ref|ZP_08856037.1| hypothetical protein HMPREF9022_01694 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906253|gb|EGX75982.1| hypothetical protein HMPREF9022_01694 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 486
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
E+EI G+ DSR A D++ C G DGH ++ + ++G +V SK +D +
Sbjct: 12 EIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKPVD--DMKKGV 69
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
A + VE+ N L +F G
Sbjct: 70 AYIQVENVNRTLNRVASMFYG 90
>gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. HGF2]
gi|422327213|ref|ZP_16408240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Erysipelotrichaceae
bacterium 6_1_45]
gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Clostridium sp. HGF2]
gi|371663907|gb|EHO29091.1| UDP-N-acetylmuramyl-tripeptide synthetase [Erysipelotrichaceae
bacterium 6_1_45]
Length = 486
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
E+EI G+ DSR A D++ C G DGH ++ + ++G +V SK +D +
Sbjct: 12 EIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKPVD--DMKKGV 69
Query: 321 ALVIVEDTNLVLPHWLPLFIG 341
A + VE+ N L +F G
Sbjct: 70 AYIQVENVNRTLNRVASMFYG 90
>gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus sphaericus C3-41]
gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus sphaericus C3-41]
Length = 493
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 238 FKMSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSE 296
++M ELL +P+ + G L ++T I DSR V +FVC G DGH Y +
Sbjct: 4 YEMYAEELL---SALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQK 60
Query: 297 ADKRGAVAVVASKEIDIEETLGCKALVIVEDTN 329
A GA VV +E+ + E + A VIV+DT+
Sbjct: 61 AVDGGATIVVTERELPLGEMI---AQVIVKDTD 90
>gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter bemidjiensis Bem]
gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacter bemidjiensis Bem]
Length = 505
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M LA+LL+ + + GD +EI + +DSR V+ G LF G K+DG ++ A K
Sbjct: 1 MKLAQLLN--CLASPELSGDAGIEIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVK 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRR 345
GAVA+VA + +V+V D L + F G R
Sbjct: 59 GGAVAIVADRPCACPGV----TVVVVPDPRLAMSLMAAAFYGTPTR 100
>gi|419953366|ref|ZP_14469511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas stutzeri TS44]
gi|387969958|gb|EIK54238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas stutzeri TS44]
Length = 457
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
T + DSR + G LFV G + DGH YL+E +GAVA + +EI
Sbjct: 26 TAVSTDSRAIEPGQLFVALSGARFDGHAYLAEVAAKGAVAALVEREIS 73
>gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
16841]
gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
16841]
Length = 493
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L+++ +E + + G LE E+ I +DSR ++ +FVC VG TDGH Y+ +A +
Sbjct: 1 MKLSKICEEIEYTLLQ--GSLETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKYIPDAVE 58
Query: 300 RGAVAVVASKE 310
+ A +V KE
Sbjct: 59 KEASVIVLEKE 69
>gi|347751907|ref|YP_004859472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 36D1]
gi|347584425|gb|AEP00692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 36D1]
Length = 458
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
E + G+ DSR + G+L+V GR DGH Y+ +A +RGA A + K D+
Sbjct: 25 ETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGAAASLWQK--DVPNPPANV 82
Query: 321 ALVIVEDT 328
L+IVEDT
Sbjct: 83 PLLIVEDT 90
>gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
Nor1]
gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
Nor1]
Length = 259
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVI 324
TGI D+R + AGDLF+ G + DGH +L +A +GA V+ S+ DI G A+V+
Sbjct: 27 TGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQGAAGVLISRR-DIVIPSGI-AVVL 84
Query: 325 VEDT-----NLVLPHWL 336
+DT NL H L
Sbjct: 85 TDDTRKALQNLACFHRL 101
>gi|438002200|ref|YP_007271943.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Tepidanaerobacter acetatoxydans Re1]
gi|432178994|emb|CCP25967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Tepidanaerobacter acetatoxydans Re1]
Length = 482
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 240 MSLAELLDESKVVP--VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M+ EL+ +++P +SV G +V I I ++S+ + G +FV G DGH ++ EA
Sbjct: 1 MNAQELI---QIIPDILSVKGYTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEA 57
Query: 298 DKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+RGA V+ K +D LG K + V+D+ L F G
Sbjct: 58 LERGAGVVIGEKALD----LGGKLYIRVKDSRKALALSSAWFYG 97
>gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
3_1_45B]
gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
3_1_45B]
Length = 473
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 237 KFKMSLAELLDESKVVPVSVYGDLEVE---ITGIQHDSRVVSAGDLFVCCVGRKTDGHLY 293
FK L L DE V V+GD E + DSR+V AGD+FV G +TDGH Y
Sbjct: 14 SFKWLLEALCDEL----VEVHGDPANEDASWIRVVTDSRIVRAGDVFVALSGERTDGHRY 69
Query: 294 LSEADKRGAVAVVASKEIDIEETLGCKALVI 324
L +A + GA +V +E L LV+
Sbjct: 70 LLQAAESGAFCLVVEH---VETGLNVPQLVV 97
>gi|344996595|ref|YP_004798938.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldicellulosiruptor lactoaceticus 6A]
gi|343964814|gb|AEM73961.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Caldicellulosiruptor lactoaceticus 6A]
Length = 500
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+ L +L++ V+ +V D + +IT I ++S+ G FVC G KTDGH Y+ EA K
Sbjct: 15 LKLKDLIENIDVLETNV-KDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIK 73
Query: 300 RGAVAVVASKEIDIEETLG 318
GA VV + D + G
Sbjct: 74 NGARLVVVDEFFDTSKIDG 92
>gi|431928351|ref|YP_007241385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas stutzeri RCH2]
gi|431826638|gb|AGA87755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas stutzeri RCH2]
Length = 458
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V + DSR + G LF+ G + DGH YL++ +GAVA + +EI+ TL
Sbjct: 22 DVSFAAVSTDSRAIEPGQLFIALTGPRFDGHAYLADVAAKGAVAALVEREIE-TSTL--- 77
Query: 321 ALVIVEDTNLVL 332
++V DT L L
Sbjct: 78 PQLVVADTRLAL 89
>gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum ATCC 824]
gi|337738028|ref|YP_004637475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum DSM 1731]
gi|384459539|ref|YP_005671959.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
acetobutylicum EA 2018]
gi|24212684|sp|Q97FC1.1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase 2; AltName:
Full=Meso-A2pm-adding enzyme 2; AltName:
Full=Meso-diaminopimelate-adding enzyme 2; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2;
AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
2
gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
acetobutylicum ATCC 824]
gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
acetobutylicum EA 2018]
gi|336292258|gb|AEI33392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium acetobutylicum DSM 1731]
Length = 483
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD+ + I GI ++S+ V +FV G + DGH ++ EA + GA AV+ + D +
Sbjct: 15 IKGDININIEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNGAAAVIIDE--DFHD 72
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
++ LV V+++ + L LF
Sbjct: 73 SIENTTLVKVKNSKVALACLCNLF 96
>gi|422408983|ref|ZP_16485944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase,
partial [Listeria monocytogenes FSL F2-208]
gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Listeria monocytogenes FSL F2-208]
Length = 346
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++ +A + GAVA K + T
Sbjct: 36 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lysinibacillus sphaericus C3-41]
gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Lysinibacillus sphaericus C3-41]
Length = 476
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
G + EITG++ ++ V GD+F+ G+KT G ++ EA RGA A+V+ + I +
Sbjct: 4 GSIRTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISL 59
>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
propionicus DSM 2379]
gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pelobacter propionicus DSM 2379]
Length = 469
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
GD ++G+ DSR V+AG LFV G + DGH ++ + +G AV+A + D E
Sbjct: 17 GDRSARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAKGVAAVLADQSFDGEIPP 76
Query: 318 GCKALVIVEDTNLVL 332
G + +V DT + L
Sbjct: 77 GLTVVRVV-DTLVAL 90
>gi|389817959|ref|ZP_10208472.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Planococcus antarcticus DSM 14505]
gi|388464249|gb|EIM06582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Planococcus antarcticus DSM 14505]
Length = 499
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 257 YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE---IDI 313
+G + I I+++S V+ G F C G TDGHLY+ EA GA ++ S + +D
Sbjct: 17 FGPKKSNINSIEYNSTHVTQGCAFFCVPGENTDGHLYIDEAIANGASTIIGSNKQIIVDY 76
Query: 314 EETLGCKALVIVEDTNLVLPH 334
E + +V + L H
Sbjct: 77 AEKYPELSFAVVANVRTALAH 97
>gi|383764769|ref|YP_005443751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381385037|dbj|BAM01854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 505
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSR V AGDLF+ G +TDGH Y+ +A ++GA AV+A
Sbjct: 25 DSRDVRAGDLFIALAGSRTDGHAYIEDALRQGAQAVIA 62
>gi|363895043|ref|ZP_09322063.1| hypothetical protein HMPREF9629_00361 [Eubacteriaceae bacterium
ACC19a]
gi|361959800|gb|EHL13061.1| hypothetical protein HMPREF9629_00361 [Eubacteriaceae bacterium
ACC19a]
Length = 486
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L +L+ K+ ++ G +V+I I ++S+ +FV VG DGH Y+ +A
Sbjct: 1 MNLQKLIKTLKIQNIT--GKTDVDIQDIVYNSKFARENTVFVALVGMSVDGHNYIQDAYD 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
+G + SKE DI+ L+ VEDT L + +F
Sbjct: 59 KGVRVFIVSKETDIKSY--DITLITVEDTRDALANISDVF 96
>gi|358063771|ref|ZP_09150373.1| hypothetical protein HMPREF9473_02436 [Clostridium hathewayi
WAL-18680]
gi|356698019|gb|EHI59577.1| hypothetical protein HMPREF9473_02436 [Clostridium hathewayi
WAL-18680]
Length = 156
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI-EET 316
G E + I DSR + DLFV +G K D H ++ +A GAVAV S+ + EE
Sbjct: 20 GRPETPVEHISIDSRTMKGNDLFVPLIGEKVDAHRFIMQAINAGAVAVFTSEHDQMEEEQ 79
Query: 317 LGCKALVIVEDTNLVL 332
G A + VEDT L
Sbjct: 80 SGGAAWIRVEDTKKAL 95
>gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te
ligase mure [Rhodococcus equi 103S]
gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
6-diaminopimelate ligase MurE [Rhodococcus equi 103S]
Length = 501
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
ITG+ DSR V GDL+ GR+ G + SEA RGAVA+++ + DI T V
Sbjct: 40 ITGVCQDSRRVRPGDLYAALPGRRHHGADFASEASARGAVAMLSDRPSDIVPT------V 93
Query: 324 IVEDTNLVL 332
+V+D + L
Sbjct: 94 VVDDPRVAL 102
>gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl tripeptide synthetase [Leptotrichia buccalis
C-1013-b]
gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
C-1013-b]
Length = 505
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK-- 320
EI GI++DSR + +FV G DGH ++ A GA ++ KE+D+++
Sbjct: 20 EIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMIICEKEVDVKQYTNTTEI 79
Query: 321 ALVIVED 327
V+VED
Sbjct: 80 TFVLVED 86
>gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl tripeptide synthetase [Spirosoma linguale DSM
74]
gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
74]
Length = 498
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
+M L ++ K+ ++ G + E+T + DSR G LF+ G TDGH Y+ A
Sbjct: 5 LRMQLKDIF--YKIPLLATSGSMNTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYIETA 62
Query: 298 DKRGAVAVVA 307
++GA A++
Sbjct: 63 IQQGATAILC 72
>gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Bartonella grahamii as4aup]
gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Bartonella grahamii as4aup]
Length = 483
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
+EITGI DSR V G +FV G+K+DG Y+ +A KRGA A+V
Sbjct: 18 SMEITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIV 63
>gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Halorhodospira halophila SL1]
gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halorhodospira halophila SL1]
Length = 450
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 249 SKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVAS 308
+ + + G+ +TG+ DSR ++G LFV G + DGH + +A RGAVAV+ +
Sbjct: 10 AALTGAELIGNGGGAVTGVALDSRRATSGSLFVALPGARCDGHDFADDAAARGAVAVLGT 69
Query: 309 KEIDIEETLGCKALVIVED 327
+ + TL +VED
Sbjct: 70 RPVGALPTL------VVED 82
>gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia mollaretii ATCC 43969]
gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
ligase [Yersinia mollaretii ATCC 43969]
Length = 471
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G A+VA
Sbjct: 4 DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVA 41
>gi|409417634|ref|ZP_11257667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. HYS]
Length = 456
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 266 GIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
G+ DSR ++AG LFV G + DGH YL++ +GAVA + +E+
Sbjct: 27 GVSIDSRAITAGQLFVALAGPRFDGHDYLNDVAAKGAVAALVQREV 72
>gi|336115444|ref|YP_004570211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 2-6]
gi|335368874|gb|AEH54825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 2-6]
Length = 458
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
E + G+ DSR + G+L+V GR DGH Y+ +A +RGA A + K D+
Sbjct: 25 ETLVQGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGAAASLWQK--DVPNPPAHV 82
Query: 321 ALVIVEDT 328
L+IVEDT
Sbjct: 83 PLLIVEDT 90
>gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
ligase [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
ligase, partial [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 321
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 243 AELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGA 302
+E L+++ + +S + + +Q +S+ V GDLF+ G + DGH Y+ +A +GA
Sbjct: 5 SETLNKALGITISNF----INCNEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDAIDKGA 59
Query: 303 VAVVASKEIDIEETLGCKALVIVED 327
VAV+ SK+IDI + +++VED
Sbjct: 60 VAVIVSKQIDIADK---DKIILVED 81
>gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
[Yersinia intermedia ATCC 29909]
gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
[Yersinia intermedia ATCC 29909]
Length = 471
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G AV+A
Sbjct: 4 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIA 41
>gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 458
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
D ++TG+ DSR GDLFV G+ DGH + A + GAVAV+A++ + +
Sbjct: 21 DPATQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSAVEAGAVAVLAARPLGLPA--- 77
Query: 319 CKALVIVEDTNLVLPHW 335
V+VED L W
Sbjct: 78 ----VVVEDPLAALGAW 90
>gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
DSM 15981]
gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
DSM 15981]
Length = 498
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
G LEV+++ + +DSR GD+FVC G + D HL++ + ++ G +V + ++
Sbjct: 17 GSLEVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFIPQVEEAGVRVIVIERPLE 71
>gi|375008081|ref|YP_004981714.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286930|gb|AEV18614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
ligase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 489
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I ++ DSR V++G LF C G DGH + EA RGA A+VA + + ++ +
Sbjct: 22 DIVALEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARGAAAIVAERPLSVD-----VPV 76
Query: 323 VIVEDTNLVLPHWLPLFIG 341
V+V D+ + F G
Sbjct: 77 VLVSDSRRTMAILADAFYG 95
>gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Polaribacter sp. MED152]
gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
[Polaribacter sp. MED152]
Length = 481
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
KV V+G+ +E+ + DSR V GD+F+ G DGHLY+ +A GA A++
Sbjct: 3 KVAIKQVFGNTNIEVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIIC 60
>gi|392389972|ref|YP_006426575.1| UDP-N-acetylmuramyl tripeptide synthetase [Ornithobacterium
rhinotracheale DSM 15997]
gi|390521050|gb|AFL96781.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ornithobacterium
rhinotracheale DSM 15997]
Length = 486
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
++ +G++ E+ GIQ DSR V D+FV VG +DGH ++ A ++GA ++
Sbjct: 13 LASFGEMAKEVRGIQFDSRKVEQDDVFVAIVGSLSDGHKFIDSAIEKGAKTIIC 66
>gi|402494450|ref|ZP_10841191.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Aquimarina agarilytica ZC1]
Length = 486
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
SL +L KV +V G+ V + +Q DSR+V+ D+FV G + DGH ++ +A +
Sbjct: 3 SLTNIL--YKVSIEAVMGNTHVSVNSLQFDSRLVALNDVFVAVRGVQVDGHQFIKKAIDQ 60
Query: 301 GAVAVVA 307
GA+ +V
Sbjct: 61 GALVIVC 67
>gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. PCC 7002]
gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Synechococcus sp. PCC 7002]
Length = 445
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
TG+ D+R + G++FV VG K DGH Y+ +A + GA+A++ S+ ++
Sbjct: 26 TGVSTDTRDLQPGNVFVALVGEKFDGHDYVDQAHQAGAIALITSRPLE 73
>gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodopseudomonas palustris BisB18]
gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodopseudomonas palustris BisB18]
Length = 511
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL + + E+E+ G+ DSR V +G++F G TDG Y+ +A
Sbjct: 25 INMKLRELFSDDVAIAAEAS---EIEVRGVASDSRAVLSGEVFFALAGANTDGARYIDQA 81
Query: 298 DKRGAVAVVASK 309
GAVAVV +
Sbjct: 82 IANGAVAVVGEQ 93
>gi|442609551|ref|ZP_21024288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441749023|emb|CCQ10350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 463
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
++ I D+R + GD+FV VG K DGH ++ +A ++G VAVV +++DI+ L
Sbjct: 23 DVLNISTDTRTLKPGDVFVALVGEKFDGHEFIKQACEQGVVAVVVDRKLDID-------L 75
Query: 323 V--IVEDTNLVL 332
V +V DT L L
Sbjct: 76 VQFVVPDTKLAL 87
>gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Burkholderia gladioli BSR3]
gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Burkholderia gladioli BSR3]
Length = 468
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 240 MSLAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M++ L + ++P + V GD V + + DSR V GDLFV G + D H +L++
Sbjct: 1 MTMLTLQQAAALIPGAIVTGDGNVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADVA 60
Query: 299 KRGAVAVVASKE 310
RGA A + S+E
Sbjct: 61 ARGANAALVSRE 72
>gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster
bacterium]
Length = 419
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
++ I G+ D+R G LFV +G D H Y+ A+K GAVA++ASK++
Sbjct: 22 DIIINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEKMGAVAIIASKQV 72
>gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
[Yersinia bercovieri ATCC 43970]
gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
[Yersinia bercovieri ATCC 43970]
Length = 471
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG +TDG Y+ +A +G A+VA
Sbjct: 4 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVA 41
>gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Geobacillus kaustophilus HTA426]
gi|81347689|sp|Q5L0Y0.1|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
[Geobacillus kaustophilus HTA426]
Length = 489
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+I ++ DSR V++G LF C G DGH + EA RGA A+VA + + ++
Sbjct: 22 DIVALEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARGAAAIVAERPLSVD 73
>gi|393719281|ref|ZP_10339208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingomonas
echinoides ATCC 14820]
Length = 457
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
TG+ DSR V GDLFV G TDGH +L +A RGA + S+
Sbjct: 24 TGVTFDSREVGPGDLFVAMTGAATDGHRFLDQAFARGAAGALVSQ 68
>gi|423099954|ref|ZP_17087661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria innocua ATCC 33091]
gi|370793687|gb|EHN61520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria innocua ATCC 33091]
Length = 470
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+V ITGI D+R + +GDLF VG DGH ++S+A + GAVA K++
Sbjct: 36 DVVITGICFDTRQIKSGDLFFPFVGNLRDGHEFVSQAREMGAVATFWQKDV 86
>gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus fusiformis ZC1]
gi|424738185|ref|ZP_18166627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus fusiformis ZB2]
gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus fusiformis ZC1]
gi|422947887|gb|EKU42276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2 [Lysinibacillus fusiformis ZB2]
Length = 488
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G L +++ I DSR V +FVC G DGH Y +A GA VV +E+ + E
Sbjct: 15 IIGVLPDQVSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGE 74
Query: 316 TLGCKALVIVEDTN 329
T+ A VIV+DT+
Sbjct: 75 TI---AQVIVKDTD 85
>gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL J2-071]
gi|386053123|ref|YP_005970681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes Finland 1998]
gi|404407307|ref|YP_006690022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes SLCC2376]
gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL J2-071]
gi|346645774|gb|AEO38399.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes Finland 1998]
gi|404241456|emb|CBY62856.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes SLCC2376]
Length = 470
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++ +A + GAVA K + T
Sbjct: 36 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t.
morphotype B']
Length = 481
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
GD+ +I+ I +DSR+ + LF+ G +DGH Y+S A + GA +V S + + +
Sbjct: 17 GDINRDISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENGARVIVVSDAVFVAANI 76
Query: 318 GCKALVIVEDTNLVLPHWLPLFIG 341
A+V V+DT V+ F G
Sbjct: 77 ---AVVRVKDTRAVMAAIAGNFYG 97
>gi|30248990|ref|NP_841060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase protein
[Nitrosomonas europaea ATCC 19718]
gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase protein
[Nitrosomonas europaea ATCC 19718]
Length = 452
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVI 324
TG+ DSR + GDLF+ G + DGH ++S A + GAV + S + I T +
Sbjct: 23 TGVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIENGAVTAMVSADTAILPTQPDFGWIK 82
Query: 325 VEDTNLVLPHWLPLFIGIRRR 345
V+DT L L L RRR
Sbjct: 83 VKDTRLGLGQ---LAASWRRR 100
>gi|422808939|ref|ZP_16857350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL J1-208]
gi|378752553|gb|EHY63138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL J1-208]
Length = 457
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++++A + GAVA K D+
Sbjct: 23 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVNQAREMGAVATFWQK--DVPNPPTDF 80
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 81 PVILVEDTLLAL 92
>gi|386049783|ref|YP_005967774.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL R2-561]
gi|404283297|ref|YP_006684194.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes SLCC2372]
gi|405757852|ref|YP_006687128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes SLCC2479]
gi|346423629|gb|AEO25154.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes FSL R2-561]
gi|404232799|emb|CBY54202.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes SLCC2372]
gi|404235734|emb|CBY57136.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes SLCC2479]
Length = 470
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++ +A + GAVA K + T
Sbjct: 36 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|354596162|ref|ZP_09014179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Brenneria
sp. EniD312]
gi|353674097|gb|EHD20130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Brenneria
sp. EniD312]
Length = 453
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
VEI + D+R + AG LFV G K DGH Y ++A K GA A++ SK + +
Sbjct: 21 SVEIDDVATDTRKLQAGCLFVALRGEKFDGHDYAADALKNGAAALLVSKRLPVNAP---- 76
Query: 321 ALVIVEDTNLVL 332
++VEDT L L
Sbjct: 77 -QLLVEDTRLAL 87
>gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
sp. K31]
gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
sp. K31]
Length = 472
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
V GD E TG+ DSR + GDLFV G + DGH ++ + RGA + SK + I
Sbjct: 29 VLGDFEA--TGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTADRGAAGALISKPVAIPA 85
Query: 316 TLGCKALVIVEDTNLVL 332
V+VEDT L L
Sbjct: 86 -------VLVEDTFLAL 95
>gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
hydrothermalis 108]
gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
hydrothermalis 108]
Length = 486
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +L++ V+ +V D + +IT I ++S+ G FVC G K DGH Y+ EA +
Sbjct: 1 MKLKDLIENIDVLETNV-KDFDKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYIDEAIQ 59
Query: 300 RGAVAVVASKEIDIEETLG 318
GA VV + D + G
Sbjct: 60 NGACLVVVEEFFDTSKIEG 78
>gi|244539210|dbj|BAH83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Ishikawaella capsulata Mpkobe]
Length = 494
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
LE ++ GI+ DSR + GDLFV G TDG ++ +A +GA AV+A E
Sbjct: 16 LEKKVLGIKEDSRQIKPGDLFVAIPGYHTDGRFFIDKAIAKGASAVLAETE 66
>gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
[Yersinia aldovae ATCC 35236]
gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
[Yersinia aldovae ATCC 35236]
Length = 471
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKE 310
DSRV +AGD+FV VG +TDG Y+ +A +G AV+A E
Sbjct: 4 DSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAE 44
>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
proteobacterium HTCC2080]
gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
proteobacterium HTCC2080]
Length = 456
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+E++G+ DSR V GDLFV G K DGH YL A +RGA A + +++
Sbjct: 26 LEVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEAALERGAGAALVQQQV 75
>gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes str. 1/2a F6854]
gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes F6900]
gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes J2818]
gi|386046518|ref|YP_005964850.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes J0161]
gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes str. 1/2a F6854]
gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes F6900]
gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes J2818]
gi|345533509|gb|AEO02950.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
monocytogenes J0161]
Length = 470
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++ +A + GAVA K + T
Sbjct: 36 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Roseburia intestinalis L1-82]
gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Roseburia intestinalis L1-82]
Length = 506
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G ++ E+ I +DSR ++ +FVC VG TDGH Y+ +A ++GA +V ++ + +
Sbjct: 17 GSMDAEVRDIIYDSRKIAKETMFVCMVGAVTDGHKYIPDAVEKGASVIVVERDEEAAQIP 76
Query: 318 GCKALVIVEDTNLVLP 333
G ++ VE L
Sbjct: 77 GTITVLKVESARYALA 92
>gi|348169464|ref|ZP_08876358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Saccharopolyspora spinosa NRRL 18395]
Length = 488
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
E+ G++ DSR + G LFV G + DGH + ++A GAV V+A++E+D
Sbjct: 24 EIVSAGVEFDSRKIEPGGLFVAVPGERVDGHDFAAQAVANGAVGVLAAREVD 75
>gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodococcus equi ATCC 33707]
gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhodococcus equi ATCC 33707]
Length = 501
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
ITG+ DSR V GDL+ GR+ G + SEA RGAVA+++ + DI T V
Sbjct: 40 ITGVCQDSRRVRPGDLYAALPGRRHHGADFASEATARGAVAMLSDRPSDIVPT------V 93
Query: 324 IVEDTNLVL 332
+V+D + L
Sbjct: 94 VVDDPRVAL 102
>gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
pimelate-D-alanyl-D-alanyl ligase [Listeria
monocytogenes LO28]
Length = 447
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++ +A + GAVA K + T
Sbjct: 13 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPT--DF 70
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 71 PVILVEDTLLAL 82
>gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 486
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
++I+G+ DSR V+ G++FV G K DG ++ +A RGA +AS+ ID
Sbjct: 25 LDISGLSSDSRKVAPGNVFVAVAGTKADGAGFIVDAAGRGAAVAIASQAID 75
>gi|448240515|ref|YP_007404568.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
ligase [Serratia marcescens WW4]
gi|445210879|gb|AGE16549.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
ligase [Serratia marcescens WW4]
Length = 495
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
DSRV +AGDLFV VG +TDG Y+ +A +G AV+A + E+
Sbjct: 28 DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEADGQAED 73
>gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
86-1044]
gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
86-1044]
gi|337292930|emb|CCB90929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelateligase [Waddlia chondrophila 2032/99]
Length = 489
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
+ G E+EITGI S+ V+ G+LF+ GR DG Y++EA + GA AV+
Sbjct: 15 IKGSKEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYIAEAVETGAAAVL 65
>gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Algoriphagus sp. PR1]
gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
[Algoriphagus sp. PR1]
Length = 487
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV VS GD+EV+I I DSR V G +FV G + DGH ++ +A GA AV+ K
Sbjct: 10 KVSLVSTTGDMEVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDFIDKALALGAKAVIFEK 69
>gi|365824543|ref|ZP_09366617.1| hypothetical protein HMPREF0045_00253 [Actinomyces graevenitzii
C83]
gi|365259603|gb|EHM89588.1| hypothetical protein HMPREF0045_00253 [Actinomyces graevenitzii
C83]
Length = 523
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LA+ + ++ ++ GDL+V TG+ DS ++ GDLFV G ++ G Y ++A RG
Sbjct: 20 LAQFVKTFELHELAPVGDLKV--TGVSVDSSDIAPGDLFVAIAGLRSHGARYAADAVSRG 77
Query: 302 AVAVVASKEIDIEETLGCKALVIVEDTNL 330
AVAV+ + ++ G +A V+ + NL
Sbjct: 78 AVAVL-TDAAGVQYLEGLEAAVVTSEQNL 105
>gi|386019667|ref|YP_005937691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Pseudomonas
stutzeri DSM 4166]
gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
stutzeri DSM 4166]
Length = 458
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+ + DSR + G LF+ G + DGH YL+E +GAVA + ++E++
Sbjct: 26 SAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVAREVE 73
>gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase
[Alistipes shahii WAL 8301]
Length = 484
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 242 LAELLDESKVVPVS-VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
+ +L D K PV V GD I G+ +DSR V GD F G ++DGH Y+ A ++
Sbjct: 1 MKKLTDILKNTPVREVCGDTAAAIGGLVYDSRAVKPGDCFFAVPGTQSDGHDYIPIAVEK 60
Query: 301 GAVAVVASK 309
GA A+V +
Sbjct: 61 GAAAIVCER 69
>gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Flavobacterium johnsoniae UW101]
gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium
johnsoniae UW101]
Length = 487
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV SV G +++I I+ DSR V + D+FV G +DGH Y+ +A + GA A++ K
Sbjct: 10 KVTIESVTGSTDIDIQKIEFDSRKVESNDVFVAIRGSLSDGHDYIEKAIQLGAKAIICDK 69
Query: 310 EIDIEETLGCKALVI-VEDTNLVLPHWLPLFIG 341
+ E + I V+DTN L + G
Sbjct: 70 ---LPENIQKDVTYIQVKDTNTALAFMAANYFG 99
>gi|435854482|ref|YP_007315801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacteroides halobius DSM 5150]
gi|433670893|gb|AGB41708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacteroides halobius DSM 5150]
Length = 458
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
+S+AE+ +K V + +++ +I I D+R + G LF+ +G + H ++ +A +
Sbjct: 4 LSVAEI---TKAVAGKLTANVDFKIDNISTDTRNLKPGSLFIALIGDNFNAHNFIEDAFE 60
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
+GA + S+E+D++ K L++VEDT
Sbjct: 61 KGAKIAIVSQEVDLD-----KPLIVVEDT 84
>gi|398978392|ref|ZP_10687767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. GM25]
gi|398137192|gb|EJM26258.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudomonas sp. GM25]
Length = 455
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 266 GIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
G+ DSR + AG LF+ G + DGH YL+E +GAVA + +E+
Sbjct: 27 GVSIDSRAIKAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREV 72
>gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes HCC23]
gi|386007580|ref|YP_005925858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes L99]
gi|386026174|ref|YP_005946950.1| UDP-N-acetylmuramyl pentapeptide synthase [Listeria monocytogenes
M7]
gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Listeria
monocytogenes HCC23]
gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes L99]
gi|336022755|gb|AEH91892.1| UDP-N-acetylmuramyl pentapeptide synthase [Listeria monocytogenes
M7]
gi|441470493|emb|CCQ20248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes]
gi|441473623|emb|CCQ23377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Listeria monocytogenes N53-1]
Length = 470
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
+V ITG+ D+R + +GDLFV VG DGH ++ +A + GAVA K + T
Sbjct: 36 DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPT--DF 93
Query: 321 ALVIVEDTNLVL 332
+++VEDT L L
Sbjct: 94 PVILVEDTLLAL 105
>gi|384263074|ref|YP_005418262.1| UDP-N-acetylmuramyl tripeptide synthase [Rhodospirillum
photometricum DSM 122]
gi|378404176|emb|CCG09292.1| UDP-N-acetylmuramyl tripeptide synthase [Rhodospirillum
photometricum DSM 122]
Length = 500
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 233 IVEPKFKMSLAELLDESKVV--PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDG 290
++ P+ + S+ L D V+ PV D + +TG+ DSR V+ G LF VG+K DG
Sbjct: 1 MMTPR-RTSILRLADAFTVLGLPVPAGLDPTLTLTGLTADSRAVAPGMLFAALVGQKGDG 59
Query: 291 HLYLSEADKRGAVAVVA 307
Y+ +A GA AV+A
Sbjct: 60 RSYIPQALAAGACAVLA 76
>gi|374583032|ref|ZP_09656126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus youngiae DSM 17734]
gi|374419114|gb|EHQ91549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus youngiae DSM 17734]
Length = 478
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 249 SKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
++V +++G+ E E+ G DSR G++F G K DGH Y+ A K GAV V+A
Sbjct: 10 AQVAKGTLFGNPEAEVQGCIIDSRHAQGGEMFFALPGEKVDGHDYIEAAWKNGAVLVIA 68
>gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium tetani E88]
gi|46577021|sp|Q894B7.1|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
enzyme; AltName: Full=Meso-diaminopimelate-adding
enzyme; AltName:
Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
Full=UDP-N-acetylmuramyl-tripeptide synthetase
gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridium tetani E88]
Length = 485
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + ++ G++E++I IQ+DSR + D+F G TDGH ++ A +
Sbjct: 1 MKLKEVLKKLEYNILN--GNIEIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIE 58
Query: 300 RGAVAVVASK 309
+GA +V K
Sbjct: 59 KGAKVIVFDK 68
>gi|336401200|ref|ZP_08581972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium sp. 21_1A]
gi|336161557|gb|EGN64558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
ligase [Fusobacterium sp. 21_1A]
Length = 485
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG 318
+L+ + GI++DSR + +FV G DGH Y+ A K GA ++ SKE++++ +
Sbjct: 16 NLDRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKHNV- 74
Query: 319 CKALVIVED 327
+ V++E+
Sbjct: 75 --SYVLIEE 81
>gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Fulvimarina pelagi HTCC2506]
gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Fulvimarina pelagi HTCC2506]
Length = 483
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
+ EI+G+ DSR V G LFV G K DG ++ +A +GAVAV+ S + +E L
Sbjct: 19 KTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKGAVAVLTSSDAVVETDL 75
>gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[gamma proteobacterium HTCC2207]
gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[marine gamma proteobacterium HTCC2207]
Length = 516
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 242 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRG 301
LAE +D S+ P + ITG+ DSR V+ GDLF+ G +T+G Y+++A K+G
Sbjct: 16 LAEFVDVSRC-PAT-------PITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQG 67
Query: 302 AVAVV 306
A AV+
Sbjct: 68 AAAVL 72
>gi|428304793|ref|YP_007141618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Crinalium epipsammum PCC 9333]
gi|428246328|gb|AFZ12108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Crinalium epipsammum PCC 9333]
Length = 449
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
DL EI GI D+R + AG++FV G DGH ++ A ++GA+AV+ + I
Sbjct: 25 DLVKEIVGINTDTRSLKAGEVFVALQGENFDGHNFVDLAIEKGAIAVITHRRI 77
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,929,559,095
Number of Sequences: 23463169
Number of extensions: 274804814
Number of successful extensions: 1001782
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3916
Number of HSP's successfully gapped in prelim test: 1744
Number of HSP's that attempted gapping in prelim test: 993368
Number of HSP's gapped (non-prelim): 8261
length of query: 348
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 205
effective length of database: 9,003,962,200
effective search space: 1845812251000
effective search space used: 1845812251000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)