BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043376
(348 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0AYR3|MURE_SYNWW UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=murE PE=3 SV=1
Length = 489
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G L+ EI+GI +DSR V GDLF+C G K+DGHL+ +A + GAVAV+A +++D T
Sbjct: 17 GPLDREISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENGAVAVLAERQLD---TG 73
Query: 318 GCKALVIVEDTNLVLPHWLPLFIG 341
G L+ DT L + G
Sbjct: 74 GKATLLTTPDTRSALALLAANYYG 97
>sp|A8MH31|MURE_ALKOO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=murE PE=3 SV=1
Length = 487
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL +V + G+++++I I DSR V+ LF+C G KT G LY++EA +
Sbjct: 1 MYLQELLKGIQVEKI--IGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQ 58
Query: 300 RGAVAVVASKEIDIEETLGCKA 321
RGAVA+++ KEI IE T K
Sbjct: 59 RGAVAILSEKEIAIEGTTTIKV 80
>sp|Q8A254|MURE_BACTN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=murE
PE=3 SV=1
Length = 482
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L ELL + PV V GD +EITG+ DSR+V AG LF+ G +TDGH Y+ A +
Sbjct: 1 MLLNELL--KAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQ 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>sp|Q65JY4|MURE_BACLD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=murE PE=3 SV=1
Length = 488
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL K VP S G + +IT I+ DSR V G LFVC G DGH Y +A +
Sbjct: 1 MKLTKLLTYLKNVP-SYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAE 59
Query: 300 RGAVAVVASKEID 312
+GA A+VA +E+D
Sbjct: 60 KGAAAIVAEREVD 72
>sp|A6TS66|MURE_ALKMQ UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Alkaliphilus metalliredigens (strain QYMF)
GN=murE PE=3 SV=1
Length = 494
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L +LL+E + + + G+ + I I +DSR V+ LF+C G +TDGH ++ +A K
Sbjct: 1 MKLMDLLEE--IDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHFIDQAIK 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA+A+VA K++ L V V+DT V+ F G
Sbjct: 59 KGAIAIVAQKDMT---GLDGVTWVQVKDTRQVMAQLGSTFYG 97
>sp|Q5LIJ3|MURE_BACFN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC
9343) GN=murE PE=3 SV=1
Length = 485
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>sp|Q64ZL7|MURE_BACFR UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacteroides fragilis (strain YCH46) GN=murE
PE=3 SV=1
Length = 485
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + PV + G+ ++EITG+ DSR V +G LF+ G +TDGH Y+ A +
Sbjct: 1 MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58
Query: 300 RGAVAVVA 307
+GA A++
Sbjct: 59 KGATAILC 66
>sp|Q182Z8|MURE_CLOD6 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium difficile (strain 630) GN=murE
PE=3 SV=1
Length = 484
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
++V G+L ++I +Q+DSR V+ G LF+C G +DGH Y+ +A ++GA A + +++ I
Sbjct: 13 INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFIVEEDVAI 72
Query: 314 EETLGCKALVIVEDT 328
+ GC + V+DT
Sbjct: 73 K---GC-TFIKVKDT 83
>sp|Q748D2|MURE_GEOSL UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Geobacter sulfurreducens (strain ATCC 51573 /
DSM 12127 / PCA) GN=murE PE=3 SV=1
Length = 509
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 245 LLDESKVV-PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
L D ++VV P++V GDL EI G+ DSR V +G LF G +DGH +++ A +RGAV
Sbjct: 3 LEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAV 62
Query: 304 AVVASKEIDIEETLGCKA-LVIVEDTNLVLPHWLPLFIG 341
AVV ++ E C + V D L + LF G
Sbjct: 63 AVV----LEDETRAPCGMEWIRVGDARLAMSRMAALFYG 97
>sp|Q8CZE4|MURE2_OCEIH UDP-N-acetylmuramyl-tripeptide synthetase 2 OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=murE2 PE=3 SV=1
Length = 492
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
G L I+ I H+SR V LF+C G DGH +++EA + GA +VA +E++++
Sbjct: 17 GKLPNTISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREVNLDTNK 76
Query: 318 GCKALVIVEDTN 329
L+IV DTN
Sbjct: 77 A--TLIIVPDTN 86
>sp|Q9WY79|MURE_THEMA UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=murE PE=1 SV=1
Length = 490
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+++ ++ K + + V ++EITG+ + S V GDLF+C G K D H + E +
Sbjct: 1 MNISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVME 60
Query: 300 RGAVAVVASKEIDIE 314
+GAVAVV +EID++
Sbjct: 61 KGAVAVVVEREIDLD 75
>sp|Q8YI71|MURE_BRUME UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Brucella melitensis biotype 1 (strain 16M /
ATCC 23456 / NCTC 10094) GN=murE PE=3 SV=2
Length = 488
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRGAVAIIAGKDTAIADA 74
>sp|Q8FZP0|MURE_BRUSU UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Brucella suis biovar 1 (strain 1330) GN=murE
PE=3 SV=1
Length = 488
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316
EVEITGI DSR V G LF G K DG ++ ++A KRGAVA++A K+ I +
Sbjct: 19 EVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDTAIADA 74
>sp|Q8R9G2|MURE_THETN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=murE PE=3 SV=2
Length = 482
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 245 LLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVA 304
L+D K V + G+ V+I+G+ +DSR LF+ G KTDG LY+ EA K GAVA
Sbjct: 3 LVDLLKGVKHEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNGAVA 62
Query: 305 VVASKEIDIEETLGCKALVIVEDTNLVL 332
VV + DI E G +V+VED +
Sbjct: 63 VVTDR--DISEYPGV-TVVLVEDARAAM 87
>sp|Q8CZE6|MURE1_OCEIH UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Oceanobacillus iheyensis (strain DSM 14371 /
JCM 11309 / KCTC 3954 / HTE831) GN=murE1 PE=3 SV=1
Length = 493
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +LL+ + +V G++E EIT ++ DSR +++G FVC G DGH Y+ +A
Sbjct: 1 MELKKLLE--CLTFYNVNGEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAV 58
Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLP 333
K GA A+ SK + E + ++ VEDTN L
Sbjct: 59 KNGASAIFTSKPLMKEYGV---PIIQVEDTNRALA 90
>sp|Q8Y5L9|MURE_LISMO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=murE PE=3 SV=1
Length = 491
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 240 MSLAELLDESKVVPVSVYGDLE--VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEA 297
M L EL+ + +PV G++ +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPV-FTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRA 56
Query: 298 DKRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 57 VELGAVAIIAEKQVDV 72
>sp|Q03523|MURE_BACSU UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus subtilis (strain 168) GN=murE PE=3
SV=1
Length = 494
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
EIT I+ DSR V G LFVC G DGH + +A + GA A+VA +E+D+
Sbjct: 23 EITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV 73
>sp|A7Z4E1|MURE_BACA2 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=murE PE=3 SV=1
Length = 490
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+IT I+ DSR V G LFVC G DGH + +A + GA A+VA KE+D++
Sbjct: 23 DITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKELDVD 74
>sp|Q71XX5|MURE_LISMF UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=murE PE=3 SV=1
Length = 491
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV E +EI+ I DSR V G LF+C G DGH + S A
Sbjct: 1 MKLNELM---QAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 ELGAVAIIAEKQLDV 72
>sp|Q11RG9|MURE_CYTH3 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Cytophaga hutchinsonii (strain ATCC 33406 /
NCIMB 9469) GN=murE PE=3 SV=1
Length = 486
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 250 KVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
KV +SV G +V++T I DSR V G +F+ G +DGH ++++ ++GA AVV +
Sbjct: 9 KVSLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSFIADVIQKGATAVVCEE 68
Query: 310 EIDIEETLGC 319
+IE T C
Sbjct: 69 LPEIESTADC 78
>sp|A6LEU7|MURE_PARD8 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Parabacteroides distasonis (strain ATCC 8503 /
DSM 20701 / NCTC 11152) GN=murE PE=3 SV=1
Length = 486
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCK 320
V+IT IQ DSR V+ G LFV G DGH Y+ A ++GAVA+V + E G
Sbjct: 20 NVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAVAIVCEETPSYLE--GRC 77
Query: 321 ALVIVEDT----NLVLPHW 335
+ ++V+D+ L++ W
Sbjct: 78 SFIVVKDSAEALGLLVSRW 96
>sp|A6L075|MURE_BACV8 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM
1447 / NCTC 11154) GN=murE PE=3 SV=1
Length = 484
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD EI+GI DSR++ G +FV G +TDGH Y+ +A ++GA VV ++ E
Sbjct: 15 IIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVCE---NLPE 71
Query: 316 TLGCKALVI-VEDTNLVLPHWLPLFIG 341
TL I V DT V+ F G
Sbjct: 72 TLIENVTYIKVNDTEDVVGKLATTFYG 98
>sp|Q92NL6|MURE_RHIME UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Rhizobium meliloti (strain 1021) GN=murE PE=3
SV=1
Length = 486
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%)
Query: 262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
+EI GI DSR V GDLFV G K DG Y+++A RGA AVVA
Sbjct: 25 IEIGGITADSRQVKPGDLFVAVAGSKADGAAYIADALSRGASAVVA 70
>sp|Q8XJ99|MURE_CLOPE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium perfringens (strain 13 / Type A)
GN=murE PE=3 SV=1
Length = 484
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ G+ E ++ I++D+R + GD FVC G K DGH ++ +A K+GA ++ +++ ++E
Sbjct: 15 IKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE 74
Query: 316 TLGCKALVIVEDTNLVLPHWLPLFIG 341
+ ++ V DT L + G
Sbjct: 75 DI---TIIKVRDTRKALAIMSSNYFG 97
>sp|Q929X9|MURE_LISIN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=murE PE=3 SV=1
Length = 491
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 240 MSLAELLDESKVVPVSV-YGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L EL+ + +PV +E+ I DSR V G LF+C G DGH + A
Sbjct: 1 MKLKELM---QAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAV 57
Query: 299 KRGAVAVVASKEIDI 313
+ GAVA++A K++D+
Sbjct: 58 QLGAVAIIAEKQLDV 72
>sp|Q39YM4|MURE_GEOMG UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Geobacter metallireducens (strain GS-15 / ATCC
53774 / DSM 7210) GN=murE PE=3 SV=1
Length = 511
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 244 ELLDESKVV-PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGA 302
L D ++V+ P G L +EI G+ DSR V +G LF G TDGH Y+ + RGA
Sbjct: 2 RLEDLARVINPSEAGGSLALEIEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRGA 61
Query: 303 VAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
VAVV + E + + V+D L + F G
Sbjct: 62 VAVVVEDPSRVPEGM---TWLKVDDARLAMSRAAAAFYG 97
>sp|A5URF5|MURE_ROSS1 UDP-N-acetylmuramyl-tripeptide synthetase OS=Roseiflexus sp.
(strain RS-1) GN=murE PE=3 SV=1
Length = 509
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVV 306
EI G+ +DSR V+ G LFV G TDGH Y+ +A +RGA AVV
Sbjct: 22 EIAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERGAAAVV 65
>sp|Q7MWM7|MURE_PORGI UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Porphyromonas gingivalis (strain ATCC BAA-308
/ W83) GN=murE PE=3 SV=1
Length = 487
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L + L E + P++V G++E E++ I DSR + G LFV G TDGH Y+ +A
Sbjct: 1 MKLEQYLSELR--PIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYT 58
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDT 328
+G A V D E+ GC V V DT
Sbjct: 59 QGCRAFVVEDLPD-EKPEGC-CFVQVSDT 85
>sp|A5I1T6|MURE_CLOBH UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium botulinum (strain Hall / ATCC 3502
/ NCTC 13319 / Type A) GN=murE PE=3 SV=1
Length = 483
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI I++DSR V GDLFVC G TDGH Y +A GA +V K+++
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLE 70
>sp|A7FTY1|MURE_CLOB1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium botulinum (strain ATCC 19397 /
Type A) GN=murE PE=3 SV=1
Length = 483
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
EI I++DSR V GDLFVC G TDGH Y +A GA +V K+++
Sbjct: 21 EIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEKDLE 70
>sp|Q01Q43|MURE_SOLUE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Solibacter usitatus (strain Ellin6076) GN=murE
PE=3 SV=1
Length = 494
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Query: 240 MSLAELLDESKVVPVSVYGDL-EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M+L E+L K+ P + +L + E+TG+ +DSR V+ G LF G K DG + ++A
Sbjct: 1 MNLGEILSSVKL-PRPLAPELAQTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADAL 59
Query: 299 KRGAVAVV---------ASKEIDIEETLGCKALVIVEDT 328
RGAVAV+ A++ I +E G AL + T
Sbjct: 60 ARGAVAVISESLAPPDLAARWIQVEH--GRHALALAART 96
>sp|Q97H84|MURE1_CLOAB UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase 1 OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=murE1
PE=3 SV=1
Length = 482
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309
+ GDL VEI + +DSR V+ LF C G +DGH ++ +A ++GA +V +K
Sbjct: 15 ICGDLNVEIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKGADVIVCTK 68
>sp|Q97FC1|MURE2_CLOAB UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase 2 OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=murE2
PE=3 SV=1
Length = 483
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
+ GD+ + I GI ++S+ V +FV G + DGH ++ EA + GA AV+ + D +
Sbjct: 15 IKGDININIEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNGAAAVIIDE--DFHD 72
Query: 316 TLGCKALVIVEDTNLVLPHWLPLF 339
++ LV V+++ + L LF
Sbjct: 73 SIENTTLVKVKNSKVALACLCNLF 96
>sp|Q5L0Y0|MURE_GEOKA UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Geobacillus kaustophilus (strain HTA426)
GN=murE PE=3 SV=1
Length = 489
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
+I ++ DSR V++G LF C G DGH + EA RGA A+VA + + ++
Sbjct: 22 DIVALEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARGAAAIVAERPLSVD 73
>sp|Q894B7|MURE_CLOTE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Clostridium tetani (strain Massachusetts /
E88) GN=murE PE=3 SV=1
Length = 485
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M L E+L + + ++ G++E++I IQ+DSR + D+F G TDGH ++ A +
Sbjct: 1 MKLKEVLKKLEYNILN--GNIEIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIE 58
Query: 300 RGAVAVVASK 309
+GA +V K
Sbjct: 59 KGAKVIVFDK 68
>sp|Q8ZIF4|MURE_YERPE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Yersinia pestis GN=murE PE=3 SV=1
Length = 490
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSR+ +AGDLFV VG +TDG Y+ +A +G A+VA
Sbjct: 23 DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVA 60
>sp|Q9K9S4|MURE_BACHD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=murE PE=3 SV=1
Length = 486
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
+I I DSR V G LF C G DGH Y +A GAVAVV+ + +++ +
Sbjct: 23 DIHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPLEL-----SVPV 77
Query: 323 VIVEDTNLVLPHWLPLFIG 341
V+V D+ + F G
Sbjct: 78 VVVRDSRRAMAQVATKFYG 96
>sp|Q6D0H8|MURE_ERWCT UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=murE PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG K DG Y+ +A +G A+VA
Sbjct: 28 DSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVA 65
>sp|O84271|MURE_CHLTR UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=murE PE=3 SV=1
Length = 483
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +LL +P +YG +E + + + DSR V GD+F+ G+ +G+ Y S+A
Sbjct: 1 MHLDQLLQN---IPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAV 57
Query: 299 KRGAVAVVAS 308
GA+AV++S
Sbjct: 58 ANGAIAVLSS 67
>sp|Q3KM93|MURE_CHLTA UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Chlamydia trachomatis serovar A (strain HAR-13
/ ATCC VR-571B) GN=murE PE=3 SV=1
Length = 483
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M L +LL +P +YG +E + + + DSR V GD+F+ G+ +G+ Y S+A
Sbjct: 1 MHLDQLLQN---IPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAV 57
Query: 299 KRGAVAVVAS 308
GA+AV++S
Sbjct: 58 ANGAIAVLSS 67
>sp|A4IM04|MURE_GEOTN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=murE PE=3 SV=1
Length = 489
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEI 311
+I ++ DSR V+ G LF C G DGH + +A +RGAVA+VA + +
Sbjct: 22 DIVALEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERGAVAIVAERPL 70
>sp|Q0VS07|MURE_ALCBS UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=murE PE=3 SV=1
Length = 490
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M+L +LL + + P + G V ++G+Q DSR V GD F+ G +DG ++S+A
Sbjct: 2 MTLQQLLPNTTL-PATAAG---VVLSGLQLDSRKVMPGDAFLAVQGVASDGRQFVSQAIA 57
Query: 300 RGAVAVVASKE 310
GAVAV+A E
Sbjct: 58 AGAVAVLAEAE 68
>sp|Q88Y23|MURE_LACPL UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Lactobacillus plantarum (strain ATCC BAA-793 /
NCIMB 8826 / WCFS1) GN=murE PE=3 SV=2
Length = 493
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
M ++L++ K V + ++T + D+R V G +F+ VG DGH + +A +
Sbjct: 1 MQASQLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIE 60
Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
+GA +VASK +D+ ++ VE+T + +F G
Sbjct: 61 KGAKIIVASKPLDVN-----VPVIYVENTERAMAILADVFYG 97
>sp|O67631|MURE_AQUAE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Aquifex aeolicus (strain VF5) GN=murE PE=3
SV=1
Length = 482
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 256 VYGDLEV---EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
+Y DL + GI +S+ V G LF G + DGH ++ EA++RGA AVV
Sbjct: 12 LYMDLSFILKRVKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVV------ 65
Query: 313 IEETLGCKA-LVIVEDTNLVLPHWLPLFIG 341
+E + K ++IVEDT L F G
Sbjct: 66 VERPVSSKVPVIIVEDTRKALGKSAHEFFG 95
>sp|Q253Y4|MURE_CHLFF UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Chlamydophila felis (strain Fe/C-56) GN=murE
PE=3 SV=1
Length = 485
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 240 MSLAELLDESKVVPVSVYGDLE-VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
M+L ELL + VYG + +E+ + DSR + GD+F+ G++ DG+ + S A
Sbjct: 1 MNLKELLHNIDI-DAKVYGKISPIEVRNLTKDSRNIGFGDIFIANKGKRCDGNDFASLAV 59
Query: 299 KRGAVAVVAS 308
+ GA+AVV+S
Sbjct: 60 ENGAIAVVSS 69
>sp|Q8R635|MURE_FUSNN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=murE PE=3 SV=1
Length = 485
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 259 DLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
+L+ + GI++DSR + +FV G DGH Y+ A K GA ++ SK+++++ +
Sbjct: 16 NLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKHNV 74
>sp|P45450|MURF_SYNY3 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=murF
PE=3 SV=1
Length = 454
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID-IEETLGC 319
++ I I D+R + +GDLF+ G DGH ++ +A GA+AVV + ++ + ET+
Sbjct: 27 DIRINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDRPVEGLGETV-- 84
Query: 320 KALVIVEDTNLVLPHWLPLFIGIRRR 345
A +VEDT + H + G R+R
Sbjct: 85 -AQFLVEDTLVAYQH---IAAGWRQR 106
>sp|Q57TD5|MURE_SALCH UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Salmonella choleraesuis (strain SC-B67)
GN=murE PE=3 SV=1
Length = 495
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG + DG Y+ +A +G A++A
Sbjct: 28 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIA 65
>sp|Q8ZRU7|MURE_SALTY UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=murE PE=3 SV=1
Length = 495
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG + DG Y+ +A +G A++A
Sbjct: 28 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIA 65
>sp|Q8Z9H3|MURE_SALTI UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Salmonella typhi GN=murE PE=3 SV=1
Length = 495
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
DSRV +AGDLFV VG + DG Y+ +A +G A++A
Sbjct: 28 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIA 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,983,931
Number of Sequences: 539616
Number of extensions: 6791860
Number of successful extensions: 25559
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 24839
Number of HSP's gapped (non-prelim): 758
length of query: 348
length of database: 191,569,459
effective HSP length: 118
effective length of query: 230
effective length of database: 127,894,771
effective search space: 29415797330
effective search space used: 29415797330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)