Query 043376
Match_columns 348
No_of_seqs 215 out of 1170
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wtz_A UDP-N-acetylmuramoyl-L- 99.7 1.9E-17 6.7E-22 166.1 9.3 107 236-344 30-143 (535)
2 1e8c_A UDP-N-acetylmuramoylala 99.7 8.8E-17 3E-21 159.4 11.2 98 241-344 4-105 (498)
3 1gg4_A UDP-N-acetylmuramoylala 99.6 2.8E-15 9.6E-20 147.0 9.9 97 237-342 1-97 (452)
4 2am1_A SP protein, UDP-N-acety 99.5 9.9E-15 3.4E-19 142.7 9.7 98 238-343 1-98 (454)
5 4e79_A UDP-3-O-acylglucosamine 93.7 0.11 3.8E-06 49.7 6.7 93 238-341 6-98 (357)
6 3eh0_A UDP-3-O-[3-hydroxymyris 92.7 0.26 8.9E-06 46.6 7.5 91 238-341 2-92 (341)
7 3pmo_A UDP-3-O-[3-hydroxymyris 91.5 0.2 6.8E-06 48.3 5.4 95 235-342 21-115 (372)
8 4b1v_M Phosphatase and actin r 47.1 7.8 0.00027 25.8 1.4 19 124-142 9-29 (32)
9 2x5o_A UDP-N-acetylmuramoylala 43.8 7.6 0.00026 37.5 1.4 42 267-311 32-74 (439)
10 3ve9_A Orotidine-5'-phosphate 27.4 17 0.00057 32.7 0.7 50 280-341 152-202 (215)
11 4dbe_A Orotidine 5'-phosphate 24.8 18 0.00063 32.5 0.5 54 273-339 154-207 (222)
12 3trj_A Phosphoheptose isomeras 24.6 2E+02 0.007 24.5 7.2 36 274-309 112-149 (201)
13 1tk9_A Phosphoheptose isomeras 22.4 92 0.0032 25.5 4.3 37 273-309 107-145 (188)
14 3m91_B Prokaryotic ubiquitin-l 21.9 30 0.001 24.7 1.0 21 116-136 16-36 (44)
15 3sho_A Transcriptional regulat 21.3 92 0.0032 25.6 4.1 39 271-309 82-122 (187)
16 2yva_A DNAA initiator-associat 20.5 1E+02 0.0036 25.5 4.3 39 272-310 105-145 (196)
17 2xbl_A Phosphoheptose isomeras 20.4 1.1E+02 0.0036 25.4 4.3 37 273-309 113-151 (198)
18 2xhz_A KDSD, YRBH, arabinose 5 20.3 1.1E+02 0.0038 24.9 4.5 39 271-309 91-131 (183)
19 1x92_A APC5045, phosphoheptose 20.2 1.1E+02 0.0037 25.6 4.3 37 273-309 110-148 (199)
No 1
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=99.70 E-value=1.9e-17 Score=166.12 Aligned_cols=107 Identities=24% Similarity=0.253 Sum_probs=85.0
Q ss_pred ccccccHHHHHhhccCccccccC-C-----CcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEcc
Q 043376 236 PKFKMSLAELLDESKVVPVSVYG-D-----LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK 309 (348)
Q Consensus 236 ~~m~MtLsELLk~i~~~~~~l~G-~-----~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe 309 (348)
.||.|+|.+|+..++.. ...+ . .+..|++|++|||+|+||+||||++|.++|||+||.+|+++||++||+++
T Consensus 30 ~m~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~i~~v~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~avv~~~ 107 (535)
T 2wtz_A 30 AVVGVRLAALADQVGAA--LAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDP 107 (535)
T ss_dssp CCCCCBHHHHHHHHTCE--ESSCC--CCSTTTCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECH
T ss_pred ccccccHHHHHhhcccc--ccccccccccCCCcceeeEEecCCcCCCCCEEEEeccccccHHHHHHHHHHCCCeEEEEec
Confidence 35668999999876531 1111 1 25679999999999999999999999999999999999999999999986
Q ss_pred ccch-hhhcCcceEEEeCCHHHHHHHHHHHHhhhhc
Q 043376 310 EIDI-EETLGCKALVIVEDTNLVLPHWLPLFIGIRR 344 (348)
Q Consensus 310 ~~~~-~~~~~~ipvIvV~DtRkALg~LAAaFYg~Ps 344 (348)
.... ......+|+|.|+|++++|+.||++||++|.
T Consensus 108 ~~~~~~~~~~~~~~i~v~d~~~aL~~la~~~~~~p~ 143 (535)
T 2wtz_A 108 AGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPS 143 (535)
T ss_dssp HHHHHHCSCCSSCEEECSSSHHHHHHHHHHHTTCGG
T ss_pred CcccccccCCCceEEEECCHHHHHHHHHHHHhcCcc
Confidence 3210 0000146899999999999999999999885
No 2
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=99.68 E-value=8.8e-17 Score=159.39 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=79.6
Q ss_pred cHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccch----hhh
Q 043376 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI----EET 316 (348)
Q Consensus 241 tLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~----~~~ 316 (348)
+|.+|+..+.. .+. +..|++|++|||+|+||+||||++|.++|||+||.+|+++||++||+++.... ...
T Consensus 4 ~~~~l~~~~~~-----~~~-~~~i~~v~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~avv~~~~~~~~~~e~~~ 77 (498)
T 1e8c_A 4 NLRDLLAPWVP-----DAP-SRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 77 (498)
T ss_dssp BHHHHHTTTCT-----TCC-CCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTTCCTTCEEE
T ss_pred hHHHHHhhccc-----CCC-CceeeeEEeeCcCCCCCCEEEEecCCcCCHHHHHHHHHHCCCeEEEEcCccccccccccc
Confidence 47788764321 233 66799999999999999999999999999999999999999999999975310 000
Q ss_pred cCcceEEEeCCHHHHHHHHHHHHhhhhc
Q 043376 317 LGCKALVIVEDTNLVLPHWLPLFIGIRR 344 (348)
Q Consensus 317 ~~~ipvIvV~DtRkALg~LAAaFYg~Ps 344 (348)
...+|+|.|+|++++|+.||++||++|.
T Consensus 78 ~~~~~~i~V~d~~~aL~~la~~~~~~p~ 105 (498)
T 1e8c_A 78 MHGVPVIYLSQLNERLSALAGRFYHEPS 105 (498)
T ss_dssp ETTEEEEEETTHHHHHHHHHHHHTTCGG
T ss_pred cCCccEEEECCHHHHHHHHHHHHhCCCc
Confidence 0136899999999999999999999875
No 3
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=99.58 E-value=2.8e-15 Score=146.98 Aligned_cols=97 Identities=25% Similarity=0.359 Sum_probs=81.8
Q ss_pred cccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhh
Q 043376 237 KFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET 316 (348)
Q Consensus 237 ~m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~ 316 (348)
||.|+|++|+..+++. +.+. +..|++|++|||+|++|+||||++|.++|||+|+.+|+++||.+||+++.+.
T Consensus 1 m~~~~l~~i~~~~~~~---~~~~-~~~i~~i~~Dsr~v~~g~lf~al~G~~~dgh~f~~~a~~~Ga~~vv~~~~~~---- 72 (452)
T 1gg4_A 1 MISVTLSQLTDILNGE---LQGA-DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLD---- 72 (452)
T ss_dssp CCCEEHHHHHHHTTEE---EESC-CCEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEEEESSCCS----
T ss_pred CCcCcHHHHHHHhCCE---EeCC-CceEEEEEEeCCCcCCCcEEEEeCCCCCCHHHHHHHHHHcCCEEEEECCCcC----
Confidence 3458999999876532 2232 5789999999999999999999999999999999999999999999987532
Q ss_pred cCcceEEEeCCHHHHHHHHHHHHhhh
Q 043376 317 LGCKALVIVEDTNLVLPHWLPLFIGI 342 (348)
Q Consensus 317 ~~~ipvIvV~DtRkALg~LAAaFYg~ 342 (348)
..+|+|.|+|++++|+.|+..||++
T Consensus 73 -~~~p~i~v~~~~~~l~~la~~~~~~ 97 (452)
T 1gg4_A 73 -IDLPQLIVKDTRLAFGELAAWVRQQ 97 (452)
T ss_dssp -CSSCEEEESCHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEECCHHHHHHHHHHHHhcC
Confidence 1358999999999999999977754
No 4
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=99.54 E-value=9.9e-15 Score=142.72 Aligned_cols=98 Identities=21% Similarity=0.375 Sum_probs=80.5
Q ss_pred ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317 (348)
Q Consensus 238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~ 317 (348)
|.|++.+|++.+++.. ......+..|++|++|||+|++|+||||++|. +|||+|+.+|+++||.+||+++.+.
T Consensus 1 m~~~~~~i~~~~~~~~-~~~~~~~~~i~~i~~Dsr~v~~g~lF~al~G~-~dgh~~~~~a~~~Ga~~vv~~~~~~----- 73 (454)
T 2am1_A 1 MKLTIHEIAQVVGAKN-DISIFEDTQLEKAEFDSRLIGTGDLFVPLKGA-RDGHDFIETAFENGAAVTLSEKEVS----- 73 (454)
T ss_dssp CCCBHHHHHHHHTCSS-CSTTSCCCBCCCEESCGGGCCTTCEECCCBSS-SBGGGGHHHHHHHTCSEEEESSCCC-----
T ss_pred CCCcHHHHHHHhCCcc-cCCCccCceeeeEEEeCCCCCCCCEEEEccCC-cchHHHHHHHHHCCCEEEEECCCCC-----
Confidence 4578999998776421 00001156799999999999999999999999 9999999999999999999987432
Q ss_pred CcceEEEeCCHHHHHHHHHHHHhhhh
Q 043376 318 GCKALVIVEDTNLVLPHWLPLFIGIR 343 (348)
Q Consensus 318 ~~ipvIvV~DtRkALg~LAAaFYg~P 343 (348)
.+|+|.|+|++++|+.||..||++|
T Consensus 74 -~~p~i~v~~~~~al~~la~~~~~~~ 98 (454)
T 2am1_A 74 -NHPYILVDDVLTAFQSLASYYLEKT 98 (454)
T ss_dssp -SSCEEECSCHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEECCHHHHHHHHHHHHhhCC
Confidence 3579999999999999999888654
No 5
>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A
Probab=93.66 E-value=0.11 Score=49.70 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=67.0
Q ss_pred ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317 (348)
Q Consensus 238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~ 317 (348)
|.|+|++|++.++. .+.|+.+..|+++..= ....+|+|=|+ +...|...+....|.++|+....... ..
T Consensus 6 ~~~~~~~ia~~~~~---~~~g~~~~~i~~~~~~-~~a~~~~~~f~------~~~~~~~~~~~~~a~~~i~~~~~~~~-~~ 74 (357)
T 4e79_A 6 QQYRLDELAHLVKG---ELIGEGSLQFSNLASL-ENAEVNHLTFV------NGEKHLDQAKVSRAGAYIVTAALKEH-LP 74 (357)
T ss_dssp CCEEHHHHHHHTTC---EEESCTTCEECEECCT-TTCCTTEEEEC------CSGGGHHHHHTCCCSEEEECHHHHHT-CT
T ss_pred CcccHHHHHHHhCC---EEECCCCceEEeecCh-hcCCCCcEEEe------CChhHHHHHhcCCCEEEEEcHHHhhh-cc
Confidence 56799999998764 4567667888888764 45678998665 23478888888889999987642111 11
Q ss_pred CcceEEEeCCHHHHHHHHHHHHhh
Q 043376 318 GCKALVIVEDTNLVLPHWLPLFIG 341 (348)
Q Consensus 318 ~~ipvIvV~DtRkALg~LAAaFYg 341 (348)
...++|+|+|++.++++++..|+.
T Consensus 75 ~~~~~i~~~~p~~~~~~~~~~~~~ 98 (357)
T 4e79_A 75 EKDNFIIVDNPYLAFAILTHVFDK 98 (357)
T ss_dssp TCCEEEECSCHHHHHHHHHTTSSC
T ss_pred CCccEEEECCHHHHHHHHHHHhcc
Confidence 124689999999999999986654
No 6
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=92.69 E-value=0.26 Score=46.61 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=63.0
Q ss_pred ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376 238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317 (348)
Q Consensus 238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~ 317 (348)
+.|+|++|++.++. .+.|..++.|+++. .-+...+|+|-|.-.. .|...+....|.++|+.......
T Consensus 2 ~~~~~~~~~~~~~~---~~~g~~~~~i~~~~-~~~~a~~~~i~fl~~~------~~~~~~~~~~a~~~i~~~~~~~~--- 68 (341)
T 3eh0_A 2 ASIRLADLAQQLDA---ELHGDGDIVITGVA-SMQSAQTGHITFMVNP------KYREHLGLCQASAVVMTQDDLPF--- 68 (341)
T ss_dssp CCEEHHHHHHHTTC---EEESCSCCEECEEC-CTTTCCTTEEEECCCS------SGGGGGGGCCCSEEEECTTTGGG---
T ss_pred CcccHHHHHHHhCC---EEeCCCCceEeeee-ccccCCCCeEEEeCCH------HHHHHHhhCCCCEEEECHHHhhh---
Confidence 45789999998764 44566677888854 3456789998776333 45555556677788887643211
Q ss_pred CcceEEEeCCHHHHHHHHHHHHhh
Q 043376 318 GCKALVIVEDTNLVLPHWLPLFIG 341 (348)
Q Consensus 318 ~~ipvIvV~DtRkALg~LAAaFYg 341 (348)
.....+++.|++.+++.++..|+.
T Consensus 69 ~~~~~~~~~~p~~~~~~~~~~~~~ 92 (341)
T 3eh0_A 69 AKSAALVVKNPYLTYARMAQILDT 92 (341)
T ss_dssp CCSCEEECSCHHHHHHHHHHHHCC
T ss_pred hccceEEeCCHHHHHHHHHHHhcc
Confidence 112468999999999999987654
No 7
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=91.54 E-value=0.2 Score=48.34 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=65.6
Q ss_pred cccccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchh
Q 043376 235 EPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314 (348)
Q Consensus 235 ~~~m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~ 314 (348)
|+.|.|+|++|++.++. .+.|..++.|+++.. -+...+|+|=|.-. ..|...+....|.++|+......
T Consensus 21 ~~~~~~~~~~ia~~~~~---~~~g~~~~~i~~~~~-~~~a~~~~l~fl~~------~~~~~~~~~~~a~~~i~~~~~~~- 89 (372)
T 3pmo_A 21 MSTLSYTLGQLAAHVGA---EVRGDADLPIQGLAT-LQEAGPAQLSFLAN------PQYRKYLPESRAGAVLLTAADAD- 89 (372)
T ss_dssp EEEEEEEHHHHHHHHTC---EEESCTTCEEEEEEC-GGGCCTTSEEECCC------GGGGGGGGGCCCSEEEECHHHHT-
T ss_pred CCCccccHHHHHHHhCC---EEECCCCceEeeecC-hhhCCCCeEEEECC------HHHHHHHhcCCCcEEEEcHHHHh-
Confidence 45577899999998764 456666788888654 45778999866522 25666666667888888753211
Q ss_pred hhcCcceEEEeCCHHHHHHHHHHHHhhh
Q 043376 315 ETLGCKALVIVEDTNLVLPHWLPLFIGI 342 (348)
Q Consensus 315 ~~~~~ipvIvV~DtRkALg~LAAaFYg~ 342 (348)
.. ....++++|+..++..+...|+..
T Consensus 90 -~~-~~~~l~~~~p~~~~~~~~~~~~~~ 115 (372)
T 3pmo_A 90 -GF-AGTALVVANPYLAYASLSHLFDRK 115 (372)
T ss_dssp -TC-SSCEEECSCHHHHHHHHHGGGCCC
T ss_pred -hc-cccEEEECCHHHHHHHHHHHhccc
Confidence 11 235899999999999988866543
No 8
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=47.10 E-value=7.8 Score=25.82 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=14.5
Q ss_pred HHHHHh--hHHHHHHhccCCC
Q 043376 124 DKAVAM--KRDEYVKKGLIKP 142 (348)
Q Consensus 124 ~~~~~~--~~~~~~~~~~~~~ 142 (348)
.|-|.| -|+|++|+|+||-
T Consensus 9 erkis~rqsreelikrgvlke 29 (32)
T 4b1v_M 9 ERKISMRQSREELIKRGVLKE 29 (32)
T ss_dssp HHHHHTCCCHHHHHHTTSCCC
T ss_pred HHHHHhcccHHHHHHhhhhhh
Confidence 455555 3999999999984
No 9
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=43.85 E-value=7.6 Score=37.51 Aligned_cols=42 Identities=26% Similarity=0.134 Sum_probs=34.5
Q ss_pred eEeccCCCCCCCEEEEecccccc-hhhhHHHHHHcCCcEEEEcccc
Q 043376 267 IQHDSRVVSAGDLFVCCVGRKTD-GHLYLSEADKRGAVAVVASKEI 311 (348)
Q Consensus 267 IS~DSRkVkpGdLFVALkGer~D-GHdFIeeAIeKGAvAVVvEe~~ 311 (348)
..+|+|...++..|++ .|.+++ ||.+ .++++ ||.+||++..+
T Consensus 32 ~~~D~~~~~~~~~~l~-~G~~~~~g~~~-~~~~~-~~d~vV~s~gi 74 (439)
T 2x5o_A 32 RVMDTRMTPPGLDKLP-EAVERHTGSLN-DEWLM-AADLIVASPGI 74 (439)
T ss_dssp EEEESSSSCTTGGGSC-TTSCEEESSCC-HHHHH-TCSEEEECTTS
T ss_pred EEEECCCCcchhHHhh-CCCEEEECCCc-HHHhc-cCCEEEeCCCC
Confidence 4589999999998988 999987 7754 67777 99999998653
No 10
>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A
Probab=27.38 E-value=17 Score=32.73 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=35.5
Q ss_pred EEEe-cccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHHHHHHhh
Q 043376 280 FVCC-VGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341 (348)
Q Consensus 280 FVAL-kGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~LAAaFYg 341 (348)
|+.+ +|.+..|.. +.+|+++||..+|+-+.+ ..-+|+.+++..+...+-.
T Consensus 152 f~~v~pGI~~~g~~-~~~a~~~Gad~iVvGr~I-----------~~a~dp~~a~~~i~~~i~~ 202 (215)
T 3ve9_A 152 KLVISPGVGTQGAK-PGIALCHGADYEIVGRSV-----------YQSADPVRKLEEIVRSQEE 202 (215)
T ss_dssp SEEEECCTTSTTCC-TTHHHHTTCSEEEECHHH-----------HTSSSHHHHHHHHHHHHHH
T ss_pred cEEEcCCCCcCcCC-HHHHHHcCCCEEEeCHHH-----------cCCCCHHHHHHHHHHHHHH
Confidence 5554 898877665 778999999999987532 1235788888777665533
No 11
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=24.77 E-value=18 Score=32.51 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=36.7
Q ss_pred CCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHHHHHH
Q 043376 273 VVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339 (348)
Q Consensus 273 kVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~LAAaF 339 (348)
++.+. .++-.+|.+..|-. ..+|+++||..+|+-+.+. .-+|+.++...+...+
T Consensus 154 ~~~~~-~~~vtPGI~~~g~t-p~~a~~~Gad~iVVGR~I~-----------~A~dP~~aa~~i~~~i 207 (222)
T 4dbe_A 154 RDFEK-MTIVSPGMGSQGGS-YGDAVCAGADYEIIGRSIY-----------NAGNPLTALRTINKII 207 (222)
T ss_dssp HHCTT-CEEEECCBSTTSBC-TTHHHHHTCSEEEECHHHH-----------TSSSHHHHHHHHHHHH
T ss_pred HhCCC-CEEEcCCcccCccC-HHHHHHcCCCEEEECHHhc-----------CCCCHHHHHHHHHHHH
Confidence 33444 44445898887654 7799999999999976422 2357887777766544
No 12
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=24.56 E-value=2e+02 Score=24.55 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=29.5
Q ss_pred CCCCCEEEEe--cccccchhhhHHHHHHcCCcEEEEcc
Q 043376 274 VSAGDLFVCC--VGRKTDGHLYLSEADKRGAVAVVASK 309 (348)
Q Consensus 274 VkpGdLFVAL--kGer~DGHdFIeeAIeKGAvAVVvEe 309 (348)
+.+|+++|++ .|....-...++.|-++||..|.+..
T Consensus 112 ~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~ 149 (201)
T 3trj_A 112 GNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTG 149 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899998888 57776777788899999999888764
No 13
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=22.36 E-value=92 Score=25.52 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=29.3
Q ss_pred CCCCCCEEEEec--ccccchhhhHHHHHHcCCcEEEEcc
Q 043376 273 VVSAGDLFVCCV--GRKTDGHLYLSEADKRGAVAVVASK 309 (348)
Q Consensus 273 kVkpGdLFVALk--Ger~DGHdFIeeAIeKGAvAVVvEe 309 (348)
.+.+|+++|++. |.+.+-...+..|-++||..|.+..
T Consensus 107 ~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 107 LGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSG 145 (188)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 378999888874 7777777888889999998877654
No 14
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=21.87 E-value=30 Score=24.73 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=15.1
Q ss_pred CcchhHhHHHHHHhhHHHHHH
Q 043376 116 QDDFFGEIDKAVAMKRDEYVK 136 (348)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ 136 (348)
-|++.+|||--+..--+|||+
T Consensus 16 ~D~lLDeId~vLE~NAeeFV~ 36 (44)
T 3m91_B 16 TDDLLDEIDDVLEENAEDFVR 36 (44)
T ss_dssp HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 589999999999999999986
No 15
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.33 E-value=92 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=31.2
Q ss_pred cCCCCCCCEEEEe--cccccchhhhHHHHHHcCCcEEEEcc
Q 043376 271 SRVVSAGDLFVCC--VGRKTDGHLYLSEADKRGAVAVVASK 309 (348)
Q Consensus 271 SRkVkpGdLFVAL--kGer~DGHdFIeeAIeKGAvAVVvEe 309 (348)
...+.+++++|++ .|...+-...+..|-++||..|.+..
T Consensus 82 ~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 82 LANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTD 122 (187)
T ss_dssp HHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEES
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeC
Confidence 4578899988887 57776777788889999999888765
No 16
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=20.48 E-value=1e+02 Score=25.50 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCCCCCCEEEEec--ccccchhhhHHHHHHcCCcEEEEccc
Q 043376 272 RVVSAGDLFVCCV--GRKTDGHLYLSEADKRGAVAVVASKE 310 (348)
Q Consensus 272 RkVkpGdLFVALk--Ger~DGHdFIeeAIeKGAvAVVvEe~ 310 (348)
..+.+|+++|++. |.+.+-...+..|-++||..|.+...
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3478999888874 77777778888899999988777643
No 17
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.37 E-value=1.1e+02 Score=25.37 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCCCCCEEEEec--ccccchhhhHHHHHHcCCcEEEEcc
Q 043376 273 VVSAGDLFVCCV--GRKTDGHLYLSEADKRGAVAVVASK 309 (348)
Q Consensus 273 kVkpGdLFVALk--Ger~DGHdFIeeAIeKGAvAVVvEe 309 (348)
.+.+|+++|++. |...+-...++.|-++||..|.+..
T Consensus 113 ~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~ 151 (198)
T 2xbl_A 113 LGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTG 151 (198)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 378999888884 7776777788888899998776654
No 18
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.33 E-value=1.1e+02 Score=24.94 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=30.0
Q ss_pred cCCCCCCCEEEEec--ccccchhhhHHHHHHcCCcEEEEcc
Q 043376 271 SRVVSAGDLFVCCV--GRKTDGHLYLSEADKRGAVAVVASK 309 (348)
Q Consensus 271 SRkVkpGdLFVALk--Ger~DGHdFIeeAIeKGAvAVVvEe 309 (348)
...+.+++++|++. |...+-...++.|-++||..|++..
T Consensus 91 ~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~ 131 (183)
T 2xhz_A 91 LGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITG 131 (183)
T ss_dssp STTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEES
T ss_pred hccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEC
Confidence 35688999888874 6666666778888889998877764
No 19
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=20.16 E-value=1.1e+02 Score=25.59 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=29.6
Q ss_pred CCCCCCEEEEe--cccccchhhhHHHHHHcCCcEEEEcc
Q 043376 273 VVSAGDLFVCC--VGRKTDGHLYLSEADKRGAVAVVASK 309 (348)
Q Consensus 273 kVkpGdLFVAL--kGer~DGHdFIeeAIeKGAvAVVvEe 309 (348)
.+.+|+++|++ .|...+-...++.|-++||..|.+..
T Consensus 110 ~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~ 148 (199)
T 1x92_A 110 LGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTG 148 (199)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 47899988887 47766667788888999998887764
Done!