BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043379
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OP1|A Chain A, Crystal Structure Of Macrolide-Efflux Protein Sp_1110
          From Streptococcus Pneumoniae
 pdb|3OP1|B Chain B, Crystal Structure Of Macrolide-Efflux Protein Sp_1110
          From Streptococcus Pneumoniae
 pdb|3OP1|C Chain C, Crystal Structure Of Macrolide-Efflux Protein Sp_1110
          From Streptococcus Pneumoniae
          Length = 308

 Score = 26.2 bits (56), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 33 LPISFTKMIFSLSNDVTARSAFGGRHKDRGEVFHLADMLPSVKLLEMLSGMTSETKRM 90
          +PI   K I + S+ V     F G HK   E+F +A+      LL ++    +E+ ++
Sbjct: 8  IPIKNQKDIGTPSDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVXTFNESPKI 65


>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
           Cholesterol
 pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
           Cholesterol
 pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
           Hydroxycholesterol
 pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
           Hydroxycholesterol
 pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
           Hydroxycholesterol
 pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
           Hydroxycholesterol
          Length = 487

 Score = 26.2 bits (56), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 47  DVTARSAFGGRHKDRGEVFHLADMLPSVKLLEMLSGMTSETKRMHEKADKIFANIINDHR 106
           D+        RH+ +G      DM   ++L+ +L     ET R+H  +  +   ++ND  
Sbjct: 310 DMLRAEVLAARHQAQG------DMATMLQLVPLLKASIKETLRLHPISVTLQRYLVNDLV 363

Query: 107 ACKAMGEAHALVNVLL 122
               M  A  LV V +
Sbjct: 364 LRDYMIPAKTLVQVAI 379


>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
           Dihydroxycholesterol
 pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
           Dihydroxycholesterol
          Length = 471

 Score = 26.2 bits (56), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 47  DVTARSAFGGRHKDRGEVFHLADMLPSVKLLEMLSGMTSETKRMHEKADKIFANIINDHR 106
           D+        RH+ +G      DM   ++L+ +L     ET R+H  +  +   ++ND  
Sbjct: 307 DMLRAEVLAARHQAQG------DMATMLQLVPLLKASIKETLRLHPISVTLQRYLVNDLV 360

Query: 107 ACKAMGEAHALVNVLL 122
               M  A  LV V +
Sbjct: 361 LRDYMIPAKTLVQVAI 376


>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus
           Anthracis
          Length = 394

 Score = 25.8 bits (55), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 42  FSLSNDVTARSAFGGRHKDRGEVFHLADMLPSVKLLEMLSGMTSETKRMHEKADKIFANI 101
           F+   D+    AFG  H+       +AD LP+V  L     +    K +    ++ FA I
Sbjct: 134 FAALADIFVNDAFGAAHRAHASTAGIADYLPAVSGLLXEKELEVLGKALS-NPERPFAAI 192

Query: 102 INDHRACKAMGEAHALVNVLLDIEEHVDVQCPLTTDNIKA 141
           I   +    +G    L+  LLD  +++ +   L    +KA
Sbjct: 193 IGGAKVKDKIG----LIRHLLDKVDNLIIGGGLAYTFVKA 228


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,335,111
Number of Sequences: 62578
Number of extensions: 111394
Number of successful extensions: 208
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 8
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)