BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043380
(246 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429760|ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g10690-like [Vitis vinifera]
Length = 609
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/206 (60%), Positives = 149/206 (72%), Gaps = 4/206 (1%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +++GL+PD L+YN LI AC+KT+KLD M + E++K+N QK PD TY TLL
Sbjct: 225 EILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMKENAQKTIDVDLFPDAITYTTLL 284
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
GF HAKDL S+ +IV EMKS NL +DR+ +TA+VDALL GS K ALC+FGEI+
Sbjct: 285 KGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVDALLNCGSSK----GALCMFGEII 340
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
KR N L PKPHLY+SMM LAAR DY++VKS ++RM PDS GTISP VQ EA LLM
Sbjct: 341 KRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAVQIEADQLLM 400
Query: 221 EAALNDGQVDLALDKLSNTITRWKGI 246
EAALNDGQVD A LSN ITRWKGI
Sbjct: 401 EAALNDGQVDAATHHLSNIITRWKGI 426
>gi|296081754|emb|CBI20759.3| unnamed protein product [Vitis vinifera]
Length = 570
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/206 (60%), Positives = 149/206 (72%), Gaps = 4/206 (1%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +++GL+PD L+YN LI AC+KT+KLD M + E++K+N QK PD TY TLL
Sbjct: 242 EILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMKENAQKTIDVDLFPDAITYTTLL 301
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
GF HAKDL S+ +IV EMKS NL +DR+ +TA+VDALL GS K ALC+FGEI+
Sbjct: 302 KGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVDALLNCGSSK----GALCMFGEII 357
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
KR N L PKPHLY+SMM LAAR DY++VKS ++RM PDS GTISP VQ EA LLM
Sbjct: 358 KRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAVQIEADQLLM 417
Query: 221 EAALNDGQVDLALDKLSNTITRWKGI 246
EAALNDGQVD A LSN ITRWKGI
Sbjct: 418 EAALNDGQVDAATHHLSNIITRWKGI 443
>gi|255548570|ref|XP_002515341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545285|gb|EEF46790.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 600
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/206 (58%), Positives = 148/206 (71%), Gaps = 4/206 (1%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E ++ GL PD L+YN LI AC+K+K LD M F E++KD ++ ++ +PD+ TY TLL
Sbjct: 218 EILQLGLTPDRLTYNTLILACVKSKSLDAAMSFFEEMKDEARQTNNVNLYPDVVTYTTLL 277
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
GF +AKDL S+ IV EMK NL +DR+ FTAMVDALL SGSIK ALCIFGEI+
Sbjct: 278 KGFGNAKDLGSVKMIVLEMKLYHNLFIDRTGFTAMVDALLNSGSIK----GALCIFGEII 333
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
KR NP L PKPHLY+SMM A + DY +VK+ ++R+WPDSTGTISP +Q+EA HLLM
Sbjct: 334 KRAGVNPDLRPKPHLYLSMMRAFAVQGDYSMVKNLHKRLWPDSTGTISPAIQQEADHLLM 393
Query: 221 EAALNDGQVDLALDKLSNTITRWKGI 246
EAALN GQVD AL+ L I RW GI
Sbjct: 394 EAALNGGQVDAALENLRKIIPRWNGI 419
>gi|224121168|ref|XP_002330760.1| predicted protein [Populus trichocarpa]
gi|222872562|gb|EEF09693.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/206 (55%), Positives = 151/206 (73%), Gaps = 4/206 (1%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +E GL PD L+YN LISAC+K KLD M F +++KD Q S +PD+ TY TLL
Sbjct: 217 EILELGLTPDRLTYNTLISACVKAGKLDAAMQFFDEMKDKAQNFSRDKLYPDVVTYTTLL 276
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
GF AKDL S+L+IV+EMK NL++DR+ FTAMVDALL GS+ A+C+FGEI+
Sbjct: 277 QGFGGAKDLLSVLKIVYEMKMHRNLVIDRTAFTAMVDALLNCGSMN----GAVCVFGEII 332
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
KR NP L PKPHLY+S+M A++ DY++VK+ ++R+WPDS+G IS +QEEA HLLM
Sbjct: 333 KRAGVNPKLRPKPHLYLSLMRAFASQGDYNMVKNLHKRLWPDSSGAISLALQEEADHLLM 392
Query: 221 EAALNDGQVDLALDKLSNTITRWKGI 246
EAALNDGQV++AL+ L+N + +WK I
Sbjct: 393 EAALNDGQVNVALENLTNVVLKWKRI 418
>gi|147855724|emb|CAN81324.1| hypothetical protein VITISV_041843 [Vitis vinifera]
Length = 1120
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/196 (59%), Positives = 141/196 (71%), Gaps = 4/196 (2%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +++GL+PD L+YN LI AC+KT+KLD M + E++K+N QK PD TY TLL
Sbjct: 225 EILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMKENAQKTIDVDLFPDAITYTTLL 284
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
GF HAKDL S+ +IV EMKS NL +DR+ +TA+VDALL GS K ALCIFGEI+
Sbjct: 285 KGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVDALLNCGSSK----GALCIFGEII 340
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
KR N L PKPHLY+SMM LAAR DY++VKS ++RM PDS GTISP VQ EA LLM
Sbjct: 341 KRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAVQIEADQLLM 400
Query: 221 EAALNDGQVDLALDKL 236
EAALNDGQV + L+ L
Sbjct: 401 EAALNDGQVAVRLEAL 416
>gi|357436759|ref|XP_003588655.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477703|gb|AES58906.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 157/240 (65%), Gaps = 5/240 (2%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKK 66
V RE + V N +I+ + A +L E + +G+ PD L+YN LI AC++++K
Sbjct: 178 VLREGEHFSVSVYNLLIKGHINSGCPHTAINMLNEILHQGIMPDRLTYNTLILACVQSEK 237
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
LDV M ++K+ Q+ PDI TY TLL G AKDL S+++IV EMKSC L
Sbjct: 238 LDVAMQLFGEMKEKAQEFIHDDLFPDIVTYTTLLKGLGQAKDLVSVMQIVLEMKSCSQLY 297
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+DR+ +TA+VDALL GS+K ALCIFGEI K+V NP L PKPHLY+SMM A R
Sbjct: 298 IDRTAYTAIVDALLKCGSVK----GALCIFGEIQKQVGWNPELRPKPHLYLSMMRAFAFR 353
Query: 187 VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
DYD+VK+ ++R+ PD++GTI P QEEA HLLMEAALN GQVD+A L ++RWKGI
Sbjct: 354 GDYDLVKNLHKRILPDTSGTILPVSQEEADHLLMEAALNAGQVDVATKTLMYIVSRWKGI 413
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 31/185 (16%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILI 58
I E E+ + KLNTIV NAV+EA ID A I + ++ D+++Y L+
Sbjct: 58 ILNEIEVAKKRFGKLNTIVKNAVMEACVRCGDIDSALNIFDEMKNPDACGVDTVTYATLL 117
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K + D E +++ + P +F LL A DL+
Sbjct: 118 KGLGKAHRFDEAFRLLESVENGTAVGNPKLSAPLVF---GLLNALAEAGDLRR------- 167
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
+ A ++L G V +Y L I G I N G PH ++
Sbjct: 168 ----------ANGLLACYGSVLREGEHFSVSVYNLLIKGHI------NSGC---PHTAIN 208
Query: 179 MMHEL 183
M++E+
Sbjct: 209 MLNEI 213
>gi|357436761|ref|XP_003588656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477704|gb|AES58907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 627
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/206 (54%), Positives = 144/206 (69%), Gaps = 4/206 (1%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +G+ PD L+YN LI AC++++KLDV M ++K+ Q+ PDI TY TLL
Sbjct: 200 EILHQGIMPDRLTYNTLILACVQSEKLDVAMQLFGEMKEKAQEFIHDDLFPDIVTYTTLL 259
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G AKDL S+++IV EMKSC L +DR+ +TA+VDALL GS+K ALCIFGEI
Sbjct: 260 KGLGQAKDLVSVMQIVLEMKSCSQLYIDRTAYTAIVDALLKCGSVK----GALCIFGEIQ 315
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K+V NP L PKPHLY+SMM A R DYD+VK+ ++R+ PD++GTI P QEEA HLLM
Sbjct: 316 KQVGWNPELRPKPHLYLSMMRAFAFRGDYDLVKNLHKRILPDTSGTILPVSQEEADHLLM 375
Query: 221 EAALNDGQVDLALDKLSNTITRWKGI 246
EAALN GQVD+A L ++RWKGI
Sbjct: 376 EAALNAGQVDVATKTLMYIVSRWKGI 401
>gi|356561871|ref|XP_003549200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g10690-like [Glycine max]
Length = 558
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 108/206 (52%), Positives = 139/206 (67%), Gaps = 4/206 (1%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +G+ PD L+YN LI AC+++ KLD M F ++K QK + PDI TY T+L
Sbjct: 183 EILRQGIMPDRLTYNTLILACVESGKLDAAMQFFGEMKGEAQKFVNDDLFPDIVTYTTML 242
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
GF KDL S+L+IV EMKSC L +DR+ +T +VD L GS+K ALCIFGEI+
Sbjct: 243 KGFGRMKDLASVLKIVLEMKSCRELYIDRTAYTEIVDVFLKCGSVK----GALCIFGEIL 298
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K+ NP L PKPHLY+SMM A DYD+VK ++R+WPDS GTI QEEA HLLM
Sbjct: 299 KQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKKLHKRIWPDSAGTILLVAQEEADHLLM 358
Query: 221 EAALNDGQVDLALDKLSNTITRWKGI 246
EAALN GQV++A+ L+ ++RWKGI
Sbjct: 359 EAALNAGQVNVAIKTLTEIVSRWKGI 384
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILI 58
I +E E+ N+ KLNTIVMNAV+EA ID A +I + ++K G D+++Y L+
Sbjct: 29 ILDEVEVANKHFGKLNTIVMNAVVEACVRCGDIDSAIRIFDGMKKRDGCGVDTVTYATLL 88
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
+ +++D E +++ S P IF
Sbjct: 89 KGLGEARRVDEAFELLETVENGTVMGSPNLSAPLIF 124
>gi|356554421|ref|XP_003545545.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g10690-like [Glycine max]
Length = 590
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 141/206 (68%), Gaps = 4/206 (1%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +G+ PD L+YN LI AC+++ KLD M F E++K QK S+ PDI TY T+L
Sbjct: 220 EILRQGIMPDRLTYNTLILACVQSGKLDAAMQFFEEMKGKAQKFSNHDLFPDIVTYTTML 279
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
GF KDL ++L+IV EMKS L +DR+ +TA++DA L GS+K ALCIFGEI+
Sbjct: 280 KGFGQTKDLATVLKIVLEMKSHRELYIDRTAYTAIIDAFLKCGSVK----GALCIFGEIL 335
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K+ NP L PKPHLY+S+M A DY +VK ++R+WPDS GTI QEEA HLLM
Sbjct: 336 KQTGLNPELKPKPHLYLSLMRAFAFLGDYYLVKKLHKRIWPDSAGTILLVAQEEADHLLM 395
Query: 221 EAALNDGQVDLALDKLSNTITRWKGI 246
EAALN GQV++A+ L+ +++WKGI
Sbjct: 396 EAALNAGQVNVAVKTLTEIVSKWKGI 421
>gi|297811171|ref|XP_002873469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319306|gb|EFH49728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 156/242 (64%), Gaps = 5/242 (2%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
+I+ +H + ++ N +++ ++ A +L E + LEPD L+YN LI ACIK
Sbjct: 176 DILLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIKC 235
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+DV M F +++K+ ++ PD+ TY TL+ GF AKDL SL +I EMK C N
Sbjct: 236 GDMDVAMKFFKEMKEKAEEYYDDFLQPDVVTYTTLVKGFGDAKDLLSLQDIYLEMKLCDN 295
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+ +DR+ FTA+VDA+L GS ALC+FGEI+KR +N L PKPHLY+SMM A
Sbjct: 296 VFIDRTAFTAVVDAMLKCGSTS----GALCVFGEILKRSGANEVLRPKPHLYLSMMRAFA 351
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244
+ DY +V++ Y R+WPDS+G+IS VQ+EA +LLMEAALN GQ+D AL LS+ + RWK
Sbjct: 352 VQGDYGMVRNLYLRLWPDSSGSISKAVQQEADNLLMEAALNAGQLDEALGILSSIVRRWK 411
Query: 245 GI 246
I
Sbjct: 412 AI 413
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 46/188 (24%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEAS--------------------------------- 27
I EE E + + KLNTIVMN+V+EA
Sbjct: 58 IVEEVEAAKKRYGKLNTIVMNSVLEACVHCGNIDLALRMFHEMAEPGGIGVDSISYATIL 117
Query: 28 ---REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKC 84
+A+RIDEA+Q+LE++E G +++ N +S+ + LD + + + NG
Sbjct: 118 KGLGKARRIDEAFQMLETIEHG----TVAGNPKLSSSLIYGLLDALINAGDLRRANGLLA 173
Query: 85 SSGGF-----HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
P + Y L+ G+ +++ Q+ + ++ EM L DR T+ ++ A
Sbjct: 174 RYDILLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLR-LRLEPDRLTYNTLIHAC 232
Query: 140 LYSGSIKV 147
+ G + V
Sbjct: 233 IKCGDMDV 240
>gi|18416350|ref|NP_568233.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161461|sp|Q8VYD6.1|PP374_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g10690; AltName: Full=CBS domain-containing protein
CBSPPR1
gi|18176046|gb|AAL59974.1| unknown protein [Arabidopsis thaliana]
gi|20465289|gb|AAM20048.1| unknown protein [Arabidopsis thaliana]
gi|332004198|gb|AED91581.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 580
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 152/242 (62%), Gaps = 5/242 (2%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
+I+ +H + ++ N +++ ++ A +L E + LEPD L+YN LI ACIK
Sbjct: 179 DILLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIKC 238
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
LD M F +K+ ++ PD+ TY TL+ GF A DL SL EI EMK C N
Sbjct: 239 GDLDAAMKFFNDMKEKAEEYYDDFLQPDVVTYTTLVKGFGDATDLLSLQEIFLEMKLCEN 298
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+ +DR+ FTA+VDA+L GS ALC+FGEI+KR +N L PKPHLY+SMM A
Sbjct: 299 VFIDRTAFTAVVDAMLKCGSTS----GALCVFGEILKRSGANEVLRPKPHLYLSMMRAFA 354
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244
+ DY +V++ Y R+WPDS+G+IS VQ+EA +LLMEAALNDGQ+D AL L + + RWK
Sbjct: 355 VQGDYGMVRNLYLRLWPDSSGSISKAVQQEADNLLMEAALNDGQLDEALGILLSIVRRWK 414
Query: 245 GI 246
I
Sbjct: 415 TI 416
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 54/190 (28%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEAS--------------------------------- 27
I EE E + + +LNTIVMN+V+EA
Sbjct: 61 IVEEVEAAKKRYGRLNTIVMNSVLEACVHCGNIDLALRMFHEMAEPGGIGVDSISYATIL 120
Query: 28 ---REAQRIDEAYQILESVEKGLEP------DSLSYNI---LISACIKTKKLDVTMPFNE 75
+A+RIDEA+Q+LE++E G SL Y + LI+A + + ++
Sbjct: 121 KGLGKARRIDEAFQMLETIEYGTAAGTPKLSSSLIYGLLDALINAGDLRRANGLLARYDI 180
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
L D+G P + Y L+ G+ +++ Q+ + ++ EM L DR T+ +
Sbjct: 181 LLLDHGT--------PSVLIYNLLMKGYVNSESPQAAINLLDEMLR-LRLEPDRLTYNTL 231
Query: 136 VDALLYSGSI 145
+ A + G +
Sbjct: 232 IHACIKCGDL 241
>gi|21554395|gb|AAM63500.1| unknown [Arabidopsis thaliana]
Length = 580
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 151/242 (62%), Gaps = 5/242 (2%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
+I+ +H + ++ N +++ ++ A +L E + LEPD L+YN LI ACIK
Sbjct: 179 DILLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIKC 238
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
LD M F +K+ ++ PD+ TY TL+ GF A DL SL EI EMK C N
Sbjct: 239 GDLDAAMKFFNDMKEKAEEYYDDFLQPDVVTYTTLVKGFGDATDLLSLQEIFLEMKLCEN 298
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+ +DR+ FTA+VDA+L GS ALC+FGEI+KR +N L PKPHLY+SMM A
Sbjct: 299 VFIDRTAFTAVVDAMLKCGSTS----GALCVFGEILKRSGANEVLRPKPHLYLSMMRAFA 354
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244
+ DY +V++ Y R+WPDS+G+IS VQ+EA +LLMEAALNDGQ+D A L + + RWK
Sbjct: 355 VQGDYGMVRNLYLRLWPDSSGSISKAVQQEADNLLMEAALNDGQLDEAXGILLSIVRRWK 414
Query: 245 GI 246
I
Sbjct: 415 TI 416
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILI 58
I EE E + + +LNTIVMN+V+EA +ID A ++ + + G+ DS+SY ++
Sbjct: 61 IVEEVEAAKKRYGRLNTIVMNSVLEACVHCGKIDLALRMFHEMAEPGGIGVDSISYATIL 120
Query: 59 SACIKTKKLD 68
K +++D
Sbjct: 121 KGLGKARRID 130
>gi|449437060|ref|XP_004136310.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g10690-like [Cucumis sativus]
gi|449505519|ref|XP_004162495.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g10690-like [Cucumis sativus]
Length = 593
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 135/200 (67%), Gaps = 4/200 (2%)
Query: 47 LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
L+PD L+YN LISAC+K KLD M F +++K+ K PD+ TY TLL F
Sbjct: 225 LKPDRLTYNTLISACVKINKLDAAMYFFKEMKERADKYDQEDIFPDVVTYTTLLKSFGIL 284
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
KD++ + +IV EMKSC L +DR+ +TAM+DAL+ GSI AL +FGE++K N
Sbjct: 285 KDVRLVHKIVLEMKSCRGLSIDRTAYTAMIDALVNCGSIN----GALSLFGELLKLSGWN 340
Query: 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND 226
L PKPHLY+++M ++R DY +VK +RRMW DS+GTIS QEEA HLLMEAA ND
Sbjct: 341 LELRPKPHLYLTLMRVFSSRGDYRMVKCLHRRMWLDSSGTISLGYQEEADHLLMEAAFND 400
Query: 227 GQVDLALDKLSNTITRWKGI 246
Q+D+A++KLS I +WKGI
Sbjct: 401 NQIDVAIEKLSTIIKKWKGI 420
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 46/179 (25%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEAS--------------------------------- 27
+FEE EI R + KLNTIVMNAV+EA
Sbjct: 65 VFEEIEIAKRRYGKLNTIVMNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLL 124
Query: 28 ---REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKC 84
EA++IDEA+Q+LESVE+G + ++SA + L+ + + + NG
Sbjct: 125 KGLGEARKIDEAFQLLESVEEG----TAIGGPILSAPLIYGLLNALIEAGDMRRANGLIA 180
Query: 85 SSG-----GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
G G + I Y L+ G+ + Q+ L + EM + L DR T+ ++ A
Sbjct: 181 RYGFLLREGGNLSISVYNLLMKGYISSGVPQAALAMYNEMLN-LELKPDRLTYNTLISA 238
>gi|222641627|gb|EEE69759.1| hypothetical protein OsJ_29462 [Oryza sativa Japonica Group]
Length = 430
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 133/192 (69%), Gaps = 5/192 (2%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +GL+PD L+YN +ISAC+K+ ++D+ + F E +K+ ++ ++ PD TY TLL
Sbjct: 46 EILRQGLKPDRLTYNTIISACVKSAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLL 105
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G +++DL S+L+IV EMKS + +DR+ +TAMVDALL GSI ALCIFGEI+
Sbjct: 106 KGLGNSQDLYSVLKIVVEMKSA-PISIDRTAYTAMVDALLACGSIN----GALCIFGEII 160
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K+ +N L PKPHLY+S+M A D D+VK +RMWPDS G+IS +EEA LLM
Sbjct: 161 KQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKRLNKRMWPDSVGSISRSAKEEADELLM 220
Query: 221 EAALNDGQVDLA 232
EAALN+ Q+D+A
Sbjct: 221 EAALNNNQIDMA 232
>gi|218202193|gb|EEC84620.1| hypothetical protein OsI_31472 [Oryza sativa Indica Group]
Length = 544
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 133/192 (69%), Gaps = 5/192 (2%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +GL+PD L+YN +ISAC+K+ ++D+ + F E +K+ ++ ++ PD TY TLL
Sbjct: 160 EILRQGLKPDRLTYNTIISACVKSAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLL 219
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G +++DL S+L+IV EMKS + +DR+ +TAMVDALL GSI ALCIFGEI+
Sbjct: 220 KGLGNSQDLYSVLKIVVEMKSA-PISIDRTAYTAMVDALLACGSIN----GALCIFGEII 274
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K+ +N L PKPHLY+S+M A D D+VK +RMWPDS G+IS +EEA LLM
Sbjct: 275 KQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKRLNKRMWPDSVGSISRSAKEEADELLM 334
Query: 221 EAALNDGQVDLA 232
EAALN+ Q+D+A
Sbjct: 335 EAALNNNQIDMA 346
>gi|50726233|dbj|BAD33810.1| pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein-like [Oryza sativa Japonica
Group]
gi|50726328|dbj|BAD33918.1| pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein-like [Oryza sativa Japonica
Group]
Length = 564
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 135/198 (68%), Gaps = 5/198 (2%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +GL+PD L+YN +ISAC+K+ ++D+ + F E +K+ ++ ++ PD TY TLL
Sbjct: 237 EILRQGLKPDRLTYNTIISACVKSAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLL 296
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G +++DL S+L+IV EMKS + +DR+ +TAMVDALL GSI ALCIFGEI+
Sbjct: 297 KGLGNSQDLYSVLKIVVEMKSA-PISIDRTAYTAMVDALLACGSIN----GALCIFGEII 351
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K+ +N L PKPHLY+S+M A D D+VK +RMWPDS G+IS +EEA LLM
Sbjct: 352 KQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKRLNKRMWPDSVGSISRSAKEEADELLM 411
Query: 221 EAALNDGQVDLALDKLSN 238
EAALN+ QV + ++ LS
Sbjct: 412 EAALNNNQVAVKVETLSG 429
>gi|242044754|ref|XP_002460248.1| hypothetical protein SORBIDRAFT_02g025370 [Sorghum bicolor]
gi|241923625|gb|EER96769.1| hypothetical protein SORBIDRAFT_02g025370 [Sorghum bicolor]
Length = 614
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/192 (50%), Positives = 126/192 (65%), Gaps = 5/192 (2%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +GL+PD L+YN +ISAC+K+ ++D + F E +K+ K S+ PD TY TLL
Sbjct: 230 EILRQGLKPDRLTYNTIISACVKSAEIDKAIRFLEDMKEEANKESNPELLPDAVTYTTLL 289
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G + +DL S+L IV EMKS + LDR+ +TAMVDALL GSI ALC+FG+I+
Sbjct: 290 KGLGNNRDLYSVLNIVVEMKSSL-ISLDRTAYTAMVDALLACGSID----GALCVFGDII 344
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K N L PKPHLY+S+M A R D D+V +RMWPDS G IS +EEA LLM
Sbjct: 345 KHAGKNKDLRPKPHLYLSIMRAFATRGDVDMVMRLNKRMWPDSVGAISRAAKEEAHELLM 404
Query: 221 EAALNDGQVDLA 232
EAA+N+ Q+DLA
Sbjct: 405 EAAINNNQIDLA 416
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 1 IFEENEIVNRE---HWKLNTIVMNAVIEASREAQRIDEAYQILESVE--KGLEPDSLSYN 55
I EE E R LNTIVMNAV+EA +D A ++ E + G D +SY
Sbjct: 75 IMEEVEATRRRVRGGGLLNTIVMNAVLEACVRCGDVDRALRLFEEMRGPNGCGVDGVSYG 134
Query: 56 ILISACIKTKKLD 68
IL+ +++D
Sbjct: 135 ILLKGLGIARRID 147
>gi|357153763|ref|XP_003576558.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g10690-like [Brachypodium distachyon]
Length = 610
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 128/192 (66%), Gaps = 5/192 (2%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +GL+PD L+YN +I AC+K ++D F E +KD ++ + PD TY TLL
Sbjct: 239 EILRQGLKPDRLTYNTIIFACVKASEIDKAFRFLEDMKDEAKRGDNPELLPDAVTYTTLL 298
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G +++DL S+L+IV EMKS + +DR+ +TAM DA L GSI ALCIFGE++
Sbjct: 299 KGLGNSQDLYSVLKIVVEMKSSL-ISIDRTAYTAMADAFLACGSID----GALCIFGELI 353
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K+ SN L PKPHLY+S+M A+ D+D+VK +RMWPDS G+IS ++EA LLM
Sbjct: 354 KQAGSNNDLRPKPHLYLSIMRAFASIGDFDMVKRLNKRMWPDSVGSISSSAKQEAVELLM 413
Query: 221 EAALNDGQVDLA 232
EAA+N+ Q+D+A
Sbjct: 414 EAAINNNQIDVA 425
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE--KGLEPDSLSYNILISACIKTKKLD 68
+N IVMNAV+EA +D A Q+ E + +G D +SY IL+ +++D
Sbjct: 101 INIIVMNAVLEACVSCGDVDLAVQLFEDMRGPRGCGADGVSYGILLKGLGIARRID 156
>gi|223945469|gb|ACN26818.1| unknown [Zea mays]
gi|414589544|tpg|DAA40115.1| TPA: hypothetical protein ZEAMMB73_157272 [Zea mays]
Length = 620
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/192 (47%), Positives = 125/192 (65%), Gaps = 5/192 (2%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +GL+PD L+YN +ISAC+K+ + D + F E +K+ S+ PD TY TLL
Sbjct: 230 EILRQGLKPDRLTYNTIISACVKSAENDKAIQFLEDMKEEANTESNPELLPDAVTYTTLL 289
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G +++DL S+++IV EMKS + +DR+ +TAMVDALL GSI ALCIFG+I+
Sbjct: 290 KGLGNSRDLYSVVKIVVEMKSSL-ISIDRTAYTAMVDALLACGSID----GALCIFGDII 344
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLM 220
K N L PKPHLY+S+M A R D D+V +RMW DS G+IS +EE LLM
Sbjct: 345 KHAGKNNDLRPKPHLYLSIMRAFATRGDVDMVMRFNKRMWLDSVGSISRAAKEETHELLM 404
Query: 221 EAALNDGQVDLA 232
EAA+N+ Q+DLA
Sbjct: 405 EAAINNNQIDLA 416
>gi|10129647|emb|CAC08243.1| putative protein [Arabidopsis thaliana]
Length = 555
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 44/241 (18%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
+I+ +H + ++ N +++ ++ A +L E + LEPD L+YN LI ACIK
Sbjct: 216 DILLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIKC 275
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
LD M F +K+ ++ PD+ TY TL+ GF A DL SL EI EMK C N
Sbjct: 276 GDLDAAMKFFNDMKEKAEEYYDDFLQPDVVTYTTLVKGFGDATDLLSLQEIFLEMKLCEN 335
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+ +DR+ FTA+VDA+L GS
Sbjct: 336 VFIDRTAFTAVVDAMLKCGSTS-------------------------------------- 357
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL---SNTIT 241
DY +V++ Y R+WPDS+G+IS VQ+EA +LLMEAALNDGQ + L+ L S +I
Sbjct: 358 --GDYGMVRNLYLRLWPDSSGSISKAVQQEADNLLMEAALNDGQAAVRLETLLGFSKSIL 415
Query: 242 R 242
R
Sbjct: 416 R 416
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILI 58
I EE E + + +LNTIVMN+V+EA ID A ++ + + G+ DS+SY ++
Sbjct: 61 IVEEVEAAKKRYGRLNTIVMNSVLEACVHCGNIDLALRMFHEMAEPGGIGVDSISYATIL 120
>gi|168012903|ref|XP_001759141.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689840|gb|EDQ76210.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 594
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 125/233 (53%), Gaps = 5/233 (2%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L T+ N +I+ + EA ++++ + L+P +++N LI AC++ L +
Sbjct: 178 LTTLTFNLLIKGYSRSDNPLEALKLMDEMRSHNLQPQRVTFNSLILACVRGGDLRRALQL 237
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+K+ ++ ++ PD+ TY TLL G AKDLQ ++++V EMK +LDR +T
Sbjct: 238 LSAMKEEAKRLNTSRLLPDVVTYTTLLRGLADAKDLQGIIDMVEEMKITPTCVLDRVAYT 297
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
A+VDA + +GS + +Y E+ +P L P+ H+++++M A R D + V
Sbjct: 298 AIVDACIAAGSPQQGRIY----MEEMQNSAKQDPQLKPRAHVFLTLMRAFAERGDLESVG 353
Query: 194 SPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
S RM ++ G + E + EA L +EAA+N G+++ A L N + KGI
Sbjct: 354 SLRSRMVAEAGGHVWAEDRAEADELYIEAAVNAGKLNEAKQTLKNMVGLKKGI 406
>gi|226502927|ref|NP_001145515.1| uncharacterized protein LOC100278924 [Zea mays]
gi|195657339|gb|ACG48137.1| hypothetical protein [Zea mays]
Length = 313
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+DR+ +TAMVDALL GSI ALCIFG+I+K N L PKPHLY+S+M A R
Sbjct: 8 IDRTAYTAMVDALLACGSID----GALCIFGDIIKHAGKNNDLRPKPHLYLSIMRAFATR 63
Query: 187 VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLA 232
D D+V +RMW DS G+IS +EE LLMEAA+N+ Q+DLA
Sbjct: 64 GDVDMVMRFNKRMWLDSVGSISRAAKEETHELLMEAAINNNQIDLA 109
>gi|302823801|ref|XP_002993549.1| hypothetical protein SELMODRAFT_187482 [Selaginella moellendorffii]
gi|300138616|gb|EFJ05378.1| hypothetical protein SELMODRAFT_187482 [Selaginella moellendorffii]
Length = 664
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 7/230 (3%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N +I+ ++ EA ++ E ++ +G++ + LS+N L+ AC++ + +D + E+
Sbjct: 286 VTYNMLIKGYARSENPLEALKVREEMQLRGMQLNKLSWNSLVMACVRGQDMDAALEILEE 345
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K+ G+ S PD+ TY TL+ G A +L +L++V EMK+ + ++DR +TA++
Sbjct: 346 MKEAGK--YSVDLAPDVVTYTTLIKGLADAGNLDGVLKMVAEMKASTSCVIDRVGYTAII 403
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
DA + +GS AL F E+ + L P+ H ++SMM + D + V
Sbjct: 404 DACITAGSPT----DALTFFQEMECLAKEDRRLRPRVHAFLSMMRAFSEIGDVEKVSLLK 459
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
RM S G I E + EA LL+EAA+ G++ LA + L N + K +
Sbjct: 460 SRMAVGSAGHIWAEDRLEADELLIEAAVVSGEITLARNVLKNMTSLNKAL 509
>gi|302780245|ref|XP_002971897.1| hypothetical protein SELMODRAFT_52692 [Selaginella moellendorffii]
gi|300160196|gb|EFJ26814.1| hypothetical protein SELMODRAFT_52692 [Selaginella moellendorffii]
Length = 487
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 6/230 (2%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N +I+ ++ EA ++ E ++ +G++ + LS+N L+ AC++ + +D + E+
Sbjct: 132 VTYNMLIKGYARSENPLEALKVREEMQLRGMQLNKLSWNSLVMACVRGQDMDAALEILEE 191
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K+ G+ S PD+ TY TL+ G A +L +L++V EMK+ + ++DR +TA++
Sbjct: 192 MKEAGK--YSVDLAPDVVTYTTLIKGLADAGNLDGVLKMVAEMKASTSCVIDRVGYTAII 249
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
DA + +GS AL F E+ + L P+ H ++SMM + D + V
Sbjct: 250 DACITAGSPTG---NALTFFQEMECLAKEDRRLRPRVHAFLSMMRAFSEIGDVEKVSLLK 306
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
RM S G I E + EA LL+EAA+ G++ LA + L N + K +
Sbjct: 307 SRMAVGSAGHIWAEDRLEADELLIEAAVVSGEITLARNVLKNMTSLNKAL 356
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 23/173 (13%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+FEE + H K + NA+++ ++ R EA ++L +E G P ++YN LIS
Sbjct: 301 VFEEMKAAGFSHDK---VTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLIS 357
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A + LD M Q+ + G K PD+FTY TLL GF A ++S + I EM
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTK-------PDVFTYTTLLSGFERAGKVESAMNIFEEM 410
Query: 120 KSC-CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
++ C + TF A + +Y K V + + IF EI VC GL P
Sbjct: 411 RNAGCKPNI--CTFNAFIK--MYGNRGKFVDM--MKIFDEI--NVC---GLSP 452
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ + + L+ ++I A + R EA + + +E+ G +P ++YN++++ K
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGK--- 255
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ P+N ++ +K S G PD +TY TL+ + Q ++ EMK+
Sbjct: 256 --MGTPWN-KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA-AGFS 311
Query: 127 LDRSTFTAMVD 137
D+ T+ A++D
Sbjct: 312 HDKVTYNALLD 322
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 41 ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E + KG++PD +SYN +I A C T+ D + F+E ++D+ G PD+ TY T
Sbjct: 689 EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSE-MRDS-------GIVPDVITYNTF 740
Query: 100 LMGFRHAKDLQSLLEIV-FEMKSCCNLILDRSTFTAMVDA 138
+ + + + +V + +K C +++T+ ++VD
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCR--PNQNTYNSIVDG 778
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I +A+++ + +R+DEA ++E++ E+G P ++YN +I+ + +++D F
Sbjct: 108 NAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFM 167
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ+ + G HPDI TY L+ GF ++D+ LE++ E+ D T++
Sbjct: 168 EQM-------VAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTR-RGFTPDIVTYST 219
Query: 135 MVDALLYSGSIK 146
++D L +G ++
Sbjct: 220 VIDGLCKAGRLR 231
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E + R N V++ +A ++ +A +++ +G P++++YNIL++ C +
Sbjct: 340 EEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRA 399
Query: 65 KKLDVTMPFNEQLKDNGQKCSS 86
+ D + + +QL G C +
Sbjct: 400 GRTDQALQYLDQLNSEGGPCPT 421
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLS-YNILISACIKTKKLDVTMP 72
NT+ N ++ A R D+A Q L+ + E G P S++ Y I++ A + + D +
Sbjct: 385 NTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQ 444
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
F E++ G+ P T+AT++ A Q E++ EM
Sbjct: 445 FYEEMIQR-------GYVPAAATFATVVFALCKAHQPQQAHELLEEM 484
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 42/228 (18%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE + + + + NA+++ ++ R EA ++L E V G P ++YN LIS
Sbjct: 301 VFEEMKAAG---FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A + LD M Q+ + G K PD+FTY TLL GF A ++S + I EM
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTK-------PDVFTYTTLLSGFERAGKVESAMSIFEEM 410
Query: 120 KSC------------CNLILDRSTFTAMVDALLYSGSIKVVGLYA--------LCIFGEI 159
++ + +R FT M+ I V GL L +FG+
Sbjct: 411 RNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF---DEINVCGLSPDIVTWNTLLAVFGQN 467
Query: 160 --------VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
V + G P+ + +++ + ++ + YRRM
Sbjct: 468 GMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ + + L+ ++I A + R EA + + +E+ G +P ++YN++++ K
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGK--- 255
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ P+N ++ +K S G PD +TY TL+ + Q ++ EMK+
Sbjct: 256 --MGTPWN-KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA-AGFS 311
Query: 127 LDRSTFTAMVD 137
D+ T+ A++D
Sbjct: 312 YDKVTYNALLD 322
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 41 ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E + KG++PD +SYN +I A C T+ D + F+E + G PD+ TY T
Sbjct: 689 EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM--------RNSGIVPDVITYNTF 740
Query: 100 LMGFRHAKDLQSLLEIV-FEMKSCCNLILDRSTFTAMVDA 138
+ + + + +V + +K C +++T+ ++VD
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCR--PNQNTYNSIVDG 778
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I A +I+EAY+IL+ ++ +G PD ++Y +LI A +KLD
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKE 314
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E++K +G PD TY TLL F +DL S+ + EM+ + + D TF
Sbjct: 315 VFEKMK-------TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH-VPDVVTF 366
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKR--VCSNPGLWPKPHLYVSMM 180
T +VDAL +G+ FGE V + G+ P H Y +++
Sbjct: 367 TILVDALCKAGN-----------FGEAFDTLDVMRDQGILPNLHTYNTLI 405
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I +A D A + + V++G+ PD +Y++L+ ++D + +
Sbjct: 925 NCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYF 984
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++LK++G +PD+ Y ++ G + L+ L + EMK+ + D T+ +
Sbjct: 985 KELKESG-------LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNS 1037
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L +G ++ G I+ EI + GL P + +++ + + +
Sbjct: 1038 LILNLGIAGMVEEAGK----IYNEIQR-----AGLEPNVFTFNALIRGYSLSGKPEHAYA 1088
Query: 195 PYRRMWPDSTGTISP 209
Y+ M TG SP
Sbjct: 1089 VYQTMV---TGGFSP 1100
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + N ++ + +I EA ++ E V+KG P+++++N L K ++ + +
Sbjct: 570 KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALK 629
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ D G C PD+FTY T++ G ++ + +MK
Sbjct: 630 MLFKMMDMG--CV-----PDVFTYNTIIFGLVKNGQVKEAMCFFHQMK 670
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 37 YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96
Y + + E G ++ SYN LI +K++ F + + ++ GF P + TY
Sbjct: 174 YALRKMREFGFVLNAYSYNGLIHLLLKSR-------FCTEAMEVYRRMILEGFRPSLQTY 226
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIF 156
++L++G +D+ S++ ++ EM++ L + TFT + L +G I
Sbjct: 227 SSLMVGLGKRRDIDSVMGLLKEMET-LGLKPNVYTFTICIRVLGRAGKINEA-------- 277
Query: 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210
EI+KR+ + G P Y ++ L D K + +M TG P+
Sbjct: 278 YEILKRM-DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM---KTGRHKPD 327
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA + + +A R EA QI ++ GL PDS++YN+++ K ++D +
Sbjct: 467 NIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLL 526
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ +NG C PD+ +L+ A + ++ MK
Sbjct: 527 SEMMENG--C-----EPDVIVVNSLINTLYKADRVDEAWKMFMRMK 565
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I A +I+EAY+IL+ ++ +G PD ++Y +LI A +KLD
Sbjct: 257 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA-- 314
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
K+ K +G PD TY TLL F +DL S+ + EM+ + + D TF
Sbjct: 315 -----KEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGH-VPDVVTF 368
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKR--VCSNPGLWPKPHLYVSMM 180
T +VDAL +G+ FGE + V + G+ P H Y +++
Sbjct: 369 TILVDALCKAGN-----------FGEAFAKLDVMRDQGILPNLHTYNTLI 407
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ IV+N++I +A R+DEA+++ + E L+P ++YN L++ K K+ +
Sbjct: 539 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 598
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + G C P+ T+ TL ++ L+++F+M + D T+
Sbjct: 599 EGMVQKG--CP-----PNTITFNTLFDCLCKNDEVTLALKMLFKMMD-MGCVPDVFTYNT 650
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSN--------PGLWPKPHLYVSMMHELAAR 186
++ L+ +G +K A+C F ++ K V + PG+ K L + +++ A
Sbjct: 651 IIFGLVKNGQVK----EAMCFFHQMKKLVYPDFVTLCTLLPGVV-KAGL-IEDAYKIIAN 704
Query: 187 VDYDIVKSPYRRMWPDSTGTISPE 210
Y P W D G+I E
Sbjct: 705 FLYSCADQPANLFWEDLMGSILAE 728
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I +A D A + + V++G+ PD +Y++L+ ++D + +
Sbjct: 927 NCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYF 986
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+LK++G +PD+ Y ++ G L+ L + EMK + D T+ +
Sbjct: 987 RELKESG-------LNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNS 1039
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L +G ++ G I+ EI + GL P + +++ + + +
Sbjct: 1040 LILNLGIAGMVEEAGK----IYNEIQR-----AGLEPNVFTFNALIRGYSLSGKPEHAYA 1090
Query: 195 PYRRMWPDSTGTISP 209
Y+ M TG SP
Sbjct: 1091 VYQTM---VTGGFSP 1102
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G ++ SYN LI +K++ F + + ++ GF P + TY++L++G
Sbjct: 183 EFGFVLNAYSYNGLIHLLLKSR-------FCTEAMEVYRRMILDGFRPSLQTYSSLMVGL 235
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
+D++S++ ++ EM++ L + TFT + L +G I EI+KR+
Sbjct: 236 GKRRDIESVMGLLKEMET-LGLKPNVYTFTICIRVLGRAGKINEA--------YEILKRM 286
Query: 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210
+ G P Y ++ L D K + +M TG P+
Sbjct: 287 -DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKM---KTGRHKPD 329
>gi|224121180|ref|XP_002330763.1| predicted protein [Populus trichocarpa]
gi|222872565|gb|EEF09696.1| predicted protein [Populus trichocarpa]
Length = 242
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
RR+WPDS+G IS +QEEA HLLMEAALNDGQV++AL L
Sbjct: 17 RRLWPDSSGAISLALQEEADHLLMEAALNDGQVNVALKDL 56
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N N +I +A+RIDEA Q+ E + +GL P+++SYN LI + KL
Sbjct: 370 KPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKL----- 424
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDR 129
+ +D + + G PD+FTY+ LL GF L + M+S NL++
Sbjct: 425 --REAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVM-- 480
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY 189
+T +V A+ SG+ K A +F E+ + GL P LY ++++ L
Sbjct: 481 --YTILVHAMCKSGNHKD----ARKLFSELFVQ-----GLQPHVQLYTTIINGLCKEGLL 529
Query: 190 DIVKSPYRRMWPDS 203
D +R M D
Sbjct: 530 DEALEAFRNMEADG 543
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG- 102
E G +P+ ++Y+ LI + + + ++ + +K + G PDIFTY +L+ G
Sbjct: 226 EAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMK-------AKGISPDIFTYTSLIQGL 278
Query: 103 --FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
F K+ +LL EM S N++ D TF +VD G +
Sbjct: 279 CKFSRWKEASALLN---EMTS-LNIMPDIVTFNVLVDTFCKEGKV 319
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 20/200 (10%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
+E +++ +E + N NA+I+ + +DEAY++L V GL+ D ++Y IL+S
Sbjct: 420 YELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSV 479
Query: 61 -CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
C + + FN+ LK GF PDI +Y TL+ F K ++ E +FE
Sbjct: 480 HCRQADTNRSLVFFNKMLKV--------GFTPDIHSYTTLISTFCRQKQMKE-SERLFEE 530
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
LI + T+T+M+ G+ + A+ +F + SN G P Y ++
Sbjct: 531 AVSLGLIPTKKTYTSMICGYCRYGNTSL----AVKLFQRM-----SNHGCAPDSITYGAL 581
Query: 180 MHELAARVDYDIVKSPYRRM 199
+ L D ++ Y M
Sbjct: 582 ISGLCKESKLDDARNLYDAM 601
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N ++ +DEAY++L+ + E+GL+PD SY+ L++ KT K+D+ +
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 289
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--SCCNLILDRSTF 132
E DN S+G PD+ Y+TL+ G A L ++ +M+ SC D TF
Sbjct: 290 E---DN----SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSC---EPDVVTF 339
Query: 133 TAMVDAL 139
TA++D L
Sbjct: 340 TALMDGL 346
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 22 AVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
++++ + R+ EA ++L+ + K G +P+ ++Y LI A + K V E++ N
Sbjct: 551 SLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGN 610
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G P++ TY +L+ GF DL+ +I+ ++ N D + M+D L
Sbjct: 611 G-------VQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLC 663
Query: 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+G + AL + E +K+ G P+ +YV+++ L
Sbjct: 664 RTGRMSA----ALELL-EAIKQ----SGTPPRHDIYVALIRGL 697
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL-DVTMPF 73
+ + A+++ + R+ EA Q+LE++E + P+ ++Y+ LI KT ++ D F
Sbjct: 335 DVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVF 394
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ G P++ TY +L+ GF + S L ++ EM + + D T+
Sbjct: 395 KRMI--------VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA-TGCLPDIITYN 445
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167
++D L +G +FG++ + C NP
Sbjct: 446 TLIDGLCKTGRAPEANR----LFGDMKAKFC-NP 474
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I + ++ AY +L+ + E GL P+ ++Y+ +I + K+D
Sbjct: 160 NEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLF 219
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ +N G P++ TY TLL G + E++ EM+ L D+ ++
Sbjct: 220 RQMVEN-------GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRE-RGLQPDKFSYDT 271
Query: 135 MVDALLYSGSI 145
++ L +G I
Sbjct: 272 LMAGLCKTGKI 282
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I +I+ +A R+ EA ++K G P+ +YN+LI+ K K+
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 184
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--NLILDRST 131
+++K++ G P++ TY+T++ GF + + ++ +M ++ C NL+ T
Sbjct: 185 KEMKES-------GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV----T 233
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++ L +G + A + E+ +R GL P Y ++M L D+
Sbjct: 234 YNTLLSGLCRNGLMD----EAYELLDEMRER-----GLQPDKFSYDTLMAGLCKTGKIDM 284
Query: 192 VKSPYRRMWPDSTGTISPEV 211
+ +S G P+V
Sbjct: 285 ALKVFE---DNSNGDCPPDV 301
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 42 SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLM 101
S ++G + + +YN L A ++ +++D T + NG G P++FTYA ++
Sbjct: 15 SKQQGFDHNVYTYNRLFEALLRARRIDETC----HILKNGW---PPGITPNVFTYAVVIQ 67
Query: 102 GFRHAKDLQSLLEIVFEMK 120
G + DL E++ EM+
Sbjct: 68 GLCKSGDLDKACELLEEMR 86
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +DEA+++ E +EKGL P+ +++ LI K KLD+ M +
Sbjct: 210 SVLINGLCKESK----MDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S G PD+ TY TL+ GF DL+ +++ EM S L D+ T+T +
Sbjct: 266 QI-------LSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEM-SMKGLKPDKITYTTL 317
Query: 136 VDALLYSGSIKVVGLY 151
+D G ++ Y
Sbjct: 318 IDGSCKEGDLETAFEY 333
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL+P +S+N L++ IK LD + +G + PD++
Sbjct: 155 AQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQ-------PDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 208 TYSVLINGLCKESKMDEAHELFDEMLE-KGLVPNGVTFTTLIDGHCKNGKLDLA------ 260
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S GL P Y ++++ + D
Sbjct: 261 --MEIYKQILSQ-GLSPDLITYNTLIYGFCKKGD 291
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 20/200 (10%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
+E +++ +E + N NA+I+ + +DEAY++L V GL+ D ++Y IL+S
Sbjct: 420 YELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSV 479
Query: 61 -CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
C + + FN+ LK GF PDI +Y TL+ F K ++ E +FE
Sbjct: 480 HCRQADTNRSLVFFNKMLKV--------GFTPDIHSYTTLISXFCRQKQMKE-SERLFEE 530
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
LI + T+T+M+ G+ + A+ +F + SN G P Y ++
Sbjct: 531 AVSLGLIPTKKTYTSMICGYCRYGNTSL----AVKLFQRM-----SNHGCAPDSITYGAL 581
Query: 180 MHELAARVDYDIVKSPYRRM 199
+ L D ++ Y M
Sbjct: 582 ISGLCKESKLDDARNLYDAM 601
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 24/241 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
E+ NR + N + +I+ + R+DEA +L + K P +++YN LIS K +
Sbjct: 71 EMANR-NLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAE 129
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ E++ G PDIFTY TL+ GF +K L VFE
Sbjct: 130 RASEAYDLLEEM-------VYSGCIPDIFTYTTLITGFCKSKKSDDALR-VFEQLVARGF 181
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
D T++ ++D L G +K A+ +FG ++K + P Y S++
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLK----EAIDLFGRMIK----SGSCMPNTVTYNSLISGFCR 233
Query: 186 RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKG 245
D + RM TG+ SP+V LM ++D A D L N +TR KG
Sbjct: 234 MGKMDEAMNLLERMA--ETGS-SPDVVTYT--TLMNGFCKLARLDDAYD-LLNQMTR-KG 286
Query: 246 I 246
+
Sbjct: 287 L 287
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILI 58
+FE+ +V R ++ + + + +I+ + R+ EA + + K P++++YN LI
Sbjct: 172 VFEQ--LVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 228
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
S + K+D M E++ + G PD+ TY TL+ GF L +++ +
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGS-------SPDVVTYTTLMNGFCKLARLDDAYDLLNQ 281
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
M L D TFT+++D L + A+ I GE+ ++ CS
Sbjct: 282 MTR-KGLTPDVVTFTSLMDGLCRENRLS----DAVHILGEMRRKSCS 323
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T +MN + +R +D+AY +L + KGL PD +++ L+ + +L +
Sbjct: 260 TTLMNGFCKLAR----LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+++ + CS P ++TY T+L G+ A L+ + + E C
Sbjct: 316 EMRR--KSCS-----PTVYTYNTILDGYCRANQLEEARKFMLEEMDC 355
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109
D ++Y LI K K+L+ + F ++ S GFHPD++TY ++ L
Sbjct: 10 DFVTYTSLIQGLCKVKRLEQALIFLGKM-------VSKGFHPDVYTYTAVIHALCVENRL 62
Query: 110 QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+ + EM + NL + T+T ++D L G +
Sbjct: 63 HEARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRV 97
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 24/241 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
E+ NR + N + +I+ + R+DEA +L + K P +++YN LIS K +
Sbjct: 71 EMANR-NLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAE 129
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ E++ G PDIFTY TL+ GF +K L VFE
Sbjct: 130 RASEAYDLLEEM-------VYSGCIPDIFTYTTLITGFCKSKKSDDALR-VFEQLVARGF 181
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
D T++ ++D L G +K A+ +FG ++K + P Y S++
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLK----EAIDLFGRMIK----SGSCMPNTVTYNSLISGFCR 233
Query: 186 RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKG 245
D + RM TG+ SP+V LM ++D A D L N +TR KG
Sbjct: 234 MGKMDEAMNLLERMA--ETGS-SPDVVTYT--TLMNGFCKLARLDDAYD-LLNQMTR-KG 286
Query: 246 I 246
+
Sbjct: 287 L 287
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILI 58
+FE+ +V R ++ + + + +I+ + R+ EA + + K P++++YN LI
Sbjct: 172 VFEQ--LVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 228
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
S + K+D M E++ + G PD+ TY TL+ GF L +++ +
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGS-------SPDVVTYTTLMNGFCKLARLDDAYDLLNQ 281
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
M L D TFT+++D L + A+ I GE+ ++ CS
Sbjct: 282 MTR-KGLTPDVVTFTSLMDGLCRENRLS----DAVHILGEMRRKSCS 323
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFN 74
T +MN + +R +D+AY +L + KGL PD +++ L+ + +L D
Sbjct: 260 TTLMNGFCKLAR----LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
E + + CS P ++TY T+L G+ A L+ + + E C
Sbjct: 316 EMRR---KSCS-----PTVYTYNTILDGYCRANQLEEARKFMLEEMDC 355
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109
D ++Y LI K K+L+ + F ++ S GFHPD++TY ++ L
Sbjct: 10 DFVTYTSLIQGLCKVKRLEQALIFLGKM-------VSKGFHPDVYTYTAVIHALCVENRL 62
Query: 110 QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+ + EM + NL + T+T ++D L G +
Sbjct: 63 HEARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRV 97
>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
Length = 425
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 78/145 (53%), Gaps = 14/145 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
IFE + + +NT+ NA+++ +A ++ AYQ ++ +E +G++P+S+++N LI+
Sbjct: 211 IFER---MKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN 267
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ K ++++ S G PD+FTY ++ F A ++ E+ +M
Sbjct: 268 CLGRAKYASEAYKVLQEMR-------SAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDM 320
Query: 120 -KSCCNLILDRSTFTAMVDALLYSG 143
K+ C+ + T+ ++DAL+ +G
Sbjct: 321 EKAGCS--ANVVTYNLLIDALVKAG 343
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K N+I N +I A+ EAY++L+ + GL PD +Y +I A K +
Sbjct: 256 KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFE 315
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ G CS+ ++ TY L+ A Q +I F+MK
Sbjct: 316 MFGDMEKAG--CSA-----NVVTYNLLIDALVKAGRYQDARDIYFDMK 356
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
+E+V +H + + N +I+ + +R++E ++ E ++GL ++++Y LI +
Sbjct: 344 DEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQ 403
Query: 64 TKKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ D M F + + D G HPDI TY LL G + ++++ L +VFE
Sbjct: 404 ARDCDNAQMVFKQMVSD--------GVHPDIMTYNILLDGLCNNGNVETAL-VVFEYMQK 454
Query: 123 CNLILDRSTFTAMVDALLYSGSIK 146
++ LD T+T M++AL +G ++
Sbjct: 455 RDMKLDIVTYTTMIEALCKAGKVE 478
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 24/220 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+ ++ N +I+ + + +D+A+ + +E KG++PD +YN LIS C + D +
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ L+ N +PD+ + L+ F L ++ EM + + F
Sbjct: 309 SDMLEKN--------INPDLVFFNALIDAFVKEGKLVEAEKLYDEM------VKSKHCFP 354
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
D + Y+ IK Y G V R S GL Y +++H D D +
Sbjct: 355 ---DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 411
Query: 194 SPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+++M D + P++ ++L++ N+G V+ AL
Sbjct: 412 MVFKQMVSDG---VHPDIMTY--NILLDGLCNNGNVETAL 446
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + + KL+ + +IEA +A ++++ + + S+ KG++P+ ++Y ++S C K
Sbjct: 450 EYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 509
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +K++G +SG TY TL+ D + E++ EM+S C
Sbjct: 510 GLKEEADALFVE-MKEDGPLPNSG-------TYNTLIRARLRDGDEAASAELIKEMRS-C 560
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
D STF +V +L+ G +
Sbjct: 561 GFAGDASTF-GLVTNMLHDGRL 581
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTM 71
K + N +I R +A ++L + +EK + PD + +N LI A +K KL +
Sbjct: 282 KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEK 341
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
++E +K + C PD+ Y TL+ GF K ++ +E+ EM S L+ + T
Sbjct: 342 LYDEMVK--SKHC-----FPDVVAYNTLIKGFCKYKRVEEGMEVFREM-SQRGLVGNTVT 393
Query: 132 FTAMVDALL 140
+T ++
Sbjct: 394 YTTLIHGFF 402
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 44/205 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ +I +A+ D A + + V G+ PD ++YNIL+ ++ +
Sbjct: 390 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVF 449
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
E ++ K C +G G P++ TY T++ GF
Sbjct: 450 EYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR- 508
Query: 107 KDLQSLLEIVF-EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK--RV 163
K L+ + +F EMK L + T+ ++ A L G E++K R
Sbjct: 509 KGLKEEADALFVEMKEDGPLP-NSGTYNTLIRARLRDGDEAAS--------AELIKEMRS 559
Query: 164 CSNPGLWPKPHLYVSMMHELAARVD 188
C G L +M+H+ R+D
Sbjct: 560 CGFAGDASTFGLVTNMLHD--GRLD 582
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 9/120 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I ++ EA +++ V K GL P+ ++YNILI+ +K+D + QLK
Sbjct: 302 NILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLK- 360
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
S G P + TY TL+ G+ ++L L++V EM+ C + + T+T ++DA
Sbjct: 361 ------SSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC-IAPSKVTYTILIDAF 413
>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++V+ A A R+DEA I + V+KGL+PD+++YNILI A KT +L+ F
Sbjct: 169 NLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFV 228
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ S F ++ TY +LL D+Q L+E+ +MK+ L+ + T+
Sbjct: 229 GK---------SRSFTNEV-TYNSLLSSLGRKGDIQGLMELFGQMKA-KGLVSNELTYAI 277
Query: 135 MVDALLYSGSIKVV 148
+++ L ++G ++ V
Sbjct: 278 LIERLGWAGRVEDV 291
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + +N V++ +A R++ A+++ + ++ KGL D+++YNILI+ + KLD
Sbjct: 304 KYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGA 363
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++++NG C+ P+I TY TL+ + +L + + EMK
Sbjct: 364 LLLEMEENG--CA-----PNIITYNTLISSYGKWSNLSAATRLFLEMK 404
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N +I A ++D A +L E E G P+ ++YN LIS+ K L
Sbjct: 341 DTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLF 400
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTF 132
++K+ G P++ +Y++L+ GF A + + + EMK+ C + T+
Sbjct: 401 LEMKER-------GVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPP---NHVTY 450
Query: 133 TAMVDALLYSGSIKVVGLY------ALCIFGEIVK 161
++D L+ +G Y A C G++ K
Sbjct: 451 NLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTK 485
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
N +I++ +A +++EA + + K + PD +Y ILI + ++D M E +
Sbjct: 102 TFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESM 161
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
++ G P++FTY +++ F A + +I F+ L D T+ ++D
Sbjct: 162 -------TAQGCQPNLFTYHSVMHAFGSAGRVDEACDI-FQQMVQKGLQPDAVTYNILID 213
Query: 138 ALLYSGSIK 146
A +G ++
Sbjct: 214 AFGKTGQLE 222
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 31/218 (14%)
Query: 30 AQRIDEAYQILESVEKG-LEPDSLSYNILI----SACIKTKKLDVTMPFNEQLKDNGQKC 84
A+R D+ +++ES++K + D+ +N LI A + K L F ++
Sbjct: 8 ARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKE-------- 59
Query: 85 SSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144
G P +TY++++ F D+Q+ L ++++ + D +TF ++D+L +
Sbjct: 60 ---GGRPTAYTYSSMIQVFMKGGDVQNGL-LMYKQMLKAKFVPDHTTFNILIDSLAKADQ 115
Query: 145 IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST 204
++ A +FG++ K S P + Y ++ L D V + M
Sbjct: 116 VE----EACNVFGDMFKLNVS-----PDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGC 166
Query: 205 GTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
P + H +M A + G+VD A D + +
Sbjct: 167 ---QPNLFTY--HSVMHAFGSAGRVDEACDIFQQMVQK 199
>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 556
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I ++ EA +++ V K GL P+ ++YNILI+ K+D + QLK
Sbjct: 302 NILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLK- 360
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
S G P + TY TL+ G+ ++L L++V EM+ C + + T+T ++DA
Sbjct: 361 ------SSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC-IARSKVTYTILIDAF 413
>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
Length = 431
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 78/145 (53%), Gaps = 14/145 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
IFE + + +NT+ NA+++ +A ++ AYQ ++ +E +G++P+S+++N LI+
Sbjct: 211 IFER---MKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN 267
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ K ++++ S G PD+FTY ++ F A ++ E+ +M
Sbjct: 268 CLGRAKYASEAYKVLQEMR-------SAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDM 320
Query: 120 -KSCCNLILDRSTFTAMVDALLYSG 143
K+ C+ + T+ ++DAL+ +G
Sbjct: 321 EKAGCS--ANVVTYNLLIDALVKAG 343
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K N+I N +I A+ EAY++L+ + GL PD +Y +I A K +
Sbjct: 256 KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFE 315
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ G CS+ ++ TY L+ A Q +I F+MK
Sbjct: 316 MFGDMEKAG--CSA-----NVVTYNLLIDALVKAGRYQDARDIYFDMK 356
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 11/148 (7%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
+E ++N E + N NA+++ + R+ EAY++L+S GL+ D ++Y ILIS
Sbjct: 398 YELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISE 457
Query: 61 -CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
C + + + FN+ +K G PDI +Y TL+ F K ++ E+ FE
Sbjct: 458 HCKQAEIKQALVLFNKMVKS--------GIQPDIHSYTTLIAVFCREKRMKE-SEMFFEE 508
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKV 147
L+ T+T+M+ G++++
Sbjct: 509 AVRFGLVPTNKTYTSMICGYCREGNLRL 536
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E++ L+T+ N +I + ++DEA+ + S+ G+EPD +YN++IS C K
Sbjct: 310 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 369
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ D + F+ ++KDNG + PD TY TL+ G A ++ +E++ EM+S
Sbjct: 370 SAISDANVLFH-KMKDNGHE-------PDNSTYNTLIRGCLKAGEIDKSIELISEMRS 419
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 27/225 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ A+R+DE Q+L + +GL ++ +YN LI + L+
Sbjct: 215 DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAA---- 270
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D Q+ S G PD T LL GF + L+ LE+ FE+ + LD +
Sbjct: 271 ---QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALEL-FEVIQMSKIDLDTVAYNI 326
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
++ + + E CS P G+ P Y M+ +
Sbjct: 327 IIHGMCKGSKVD-----------EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 375
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237
+ +M + E + L+ L G++D +++ +S
Sbjct: 376 NVLFHKMKDN-----GHEPDNSTYNTLIRGCLKAGEIDKSIELIS 415
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 43 VEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLM 101
VE GL P +++N LI+ C++ + L+ N+ + G H D+ TY T++
Sbjct: 2 VEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV--------GKGLHIDVVTYGTIVN 53
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
G D +S L ++ +M+ ++ D ++A++D L G
Sbjct: 54 GMCKMGDTKSALNLLSKMEE-THIKPDVVIYSAIIDRLCKDG 94
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I+ R +A ++L + +E+ + PD L++N LISA +K KL
Sbjct: 114 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 173
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+++ +C PD TY +++ GF
Sbjct: 174 DEML---HRC----IFPDTVTYNSMIYGF 195
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I ++ EA +++ V K GL P+ ++YNILI+ K+D + QLK
Sbjct: 302 NILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLK- 360
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
S G P + TY TL+ G+ ++L L++V EM+ C + + T+T ++DA
Sbjct: 361 ------SSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC-IAPSKVTYTILIDAF 413
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
E + + + + ++ NAVI+ +A+++D+A+++LE + K G PD ++YNIL+ KT
Sbjct: 281 EEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKT 340
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKS 121
+D + DNG C+ PDI +Y+ +L G D + L + + E K
Sbjct: 341 NLVDKAHELFSTMVDNG--CA-----PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK- 392
Query: 122 CCNLILDRSTFTAMVDALLYSGSI 145
L+ D TF ++D L +G +
Sbjct: 393 ---LVPDVVTFNILMDGLCKAGKL 413
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ NA+I + + I+ AY++LE + KG EPD+++YN ++S + K+ F
Sbjct: 79 NTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFF 138
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
+ + S G+ PD+ Y LL
Sbjct: 139 DSM-------PSRGYSPDVVAYNGLL 157
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEA---YQILESVEKGLEPDSLSYNILISACIKTKKLDV 69
+ + + N +++A + ++ EA ++ ++ ++ + PD ++YN LI + +K D
Sbjct: 146 YSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDE 205
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
M KD K G+ PD TY ++L+G ++ E+ +M
Sbjct: 206 AMKL---FKDVIAK----GYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 31 QRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
+R DEA ++ + VEKG D L +NI+++ + KL + F + + S G F
Sbjct: 446 KRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVK-----SDGEF 500
Query: 90 HPDIFTYATLL 100
PD+ TY TL+
Sbjct: 501 SPDVVTYTTLV 511
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N +I+ ++ DEA ++ + V KG PD+++YN ++ + +D ++
Sbjct: 188 ITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKK 247
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--------CCNLILD 128
+ D+G C+ P+ TY+ +L G ++ LE+ EM CN ++D
Sbjct: 248 MVDSG--CA-----PNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 30 AQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
A ++DEA ++ +E+G ++++YN LI+ K + ++ E++ +S G
Sbjct: 58 AGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEM-------ASKG 110
Query: 89 FHPDIFTYATLLMGF 103
+ PD TY T+L G
Sbjct: 111 YEPDNITYNTILSGL 125
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
GF PD+ TY+T++ G + LE+V EM + D +T+T +VD L +G +
Sbjct: 5 GFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTE-KGVNPDVATYTIIVDRLCRAGKVD- 62
Query: 148 VGLYALCIFGEIVKRVCS 165
A +F ++++R CS
Sbjct: 63 ---EADELFHKMIERGCS 77
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
EKG EPD ++Y+ +IS KT K+ + E++ + G +PD+ TY ++
Sbjct: 3 EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEK-------GVNPDVATYTIIV 52
>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
Length = 1420
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 83/146 (56%), Gaps = 10/146 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEA---YQILESVEKGLEPDSLSYNILISACI 62
E + R+ +LNTI+ +I+ ++ ++D+A YQI++ +K ++P+++++N LI CI
Sbjct: 795 ETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDK-IKPNNVTFNSLIDCCI 853
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + M E++K Q S PD+ TY+T++ GF K++Q L ++ +M+
Sbjct: 854 RCNSIKKAMEIFEEMK---QPISHT--KPDLITYSTMIKGFCREKNIQQALIMLNDMEK- 907
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVV 148
N++ D + +++D + I++
Sbjct: 908 NNIMADEVLYNSLLDGCCKANEIEMA 933
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILIS 59
+F+E + N K +++ +I+A A ++D A+ + + ++ L P+S++Y LI
Sbjct: 723 VFQEMQFSN---IKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLID 779
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
AC+K +++ M E +K +G + ++ + TL+ GF + L LE+ M
Sbjct: 780 ACVKNNQIERAMEVFETMKRDGVQLNT-------IIFTTLIKGFAKSFKLDQALEVYQIM 832
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL--YV 177
K + + TF +++D + SIK A+ IF E+ + P KP L Y
Sbjct: 833 KMDDKIKPNNVTFNSLIDCCIRCNSIKK----AMEIFEEMKQ-----PISHTKPDLITYS 883
Query: 178 SMM 180
+M+
Sbjct: 884 TMI 886
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + ++ N++I+ + +I +A+ + E + +G+ P ++++N LI C+++ D
Sbjct: 398 KPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWR 457
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR---HAKDLQSLLEIVFEMKSCCNLILDR 129
EQ+K+ K PD +TY+TL G + +DL+ + ++++ + D
Sbjct: 458 VLEQMKEKQVK-------PDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDE 510
Query: 130 STFTAMVDALL 140
F ++DA +
Sbjct: 511 ILFNVLLDACI 521
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL 67
N + + I N +I+ + +++ A+++ ++ + L+P+ ++YN LI AC++ +L
Sbjct: 576 NHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRL 635
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
+ +++ N PD FTY+TL+ G R
Sbjct: 636 NSAWQLLSEMQQN-------NIVPDNFTYSTLIKGIR 665
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 33 IDEAYQILESVEK---GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
+++A+ +LE +++ G++PD + YN LI AC++ ++ + ++++
Sbjct: 680 LEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQ-------FSNI 732
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
P TY L+ + A L + + +MK C LI + T+ ++DA + + I+
Sbjct: 733 KPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNC-LIPNSVTYGCLIDACVKNNQIE--- 788
Query: 150 LYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPD 202
A+ +F E +KR G+ ++ +++ A D Y+ M D
Sbjct: 789 -RAMEVF-ETMKR----DGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMD 835
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 35/149 (23%)
Query: 24 IEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
I++ + Q +++A+ + ++ PD + +N+L+ ACI K+LD + +QLK
Sbjct: 481 IKSENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQS 540
Query: 82 QK-----------------------------CSSGGFH---PDIFTYATLLMGFRHAKDL 109
Q +S H PD ++ T++ G K L
Sbjct: 541 QPQIQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNHHFMRPDEISFNTIIKGCAQEKKL 600
Query: 110 QSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
Q E+ MK C L + T+ +++DA
Sbjct: 601 QLAFEMFNLMKMQC-LKPNDVTYNSLIDA 628
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD 68
R+ + IV NAVI+ REA + EA Q L E VE G +P+ +Y +IS K
Sbjct: 245 RQDLACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAV 304
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
QL + G+ PD+ +Y +LL G+ +AKD + + EI+ EM S
Sbjct: 305 EAQRMFSQLVE-------AGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVS 350
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDV 69
+++ LN N +++ R Q+ + + QI E + G+ PD+++Y+ LIS + D
Sbjct: 37 QNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLISCANRCNYQDA 96
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
M + +++ D +C PD TY+T++ + + + +E D+
Sbjct: 97 AMAWFDRMHD--AQCV-----PDAVTYSTMIDVYGKVGKYDEAVAL-YESVKKSGWKPDK 148
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEI 159
T+ MV +G I A+ IF E+
Sbjct: 149 VTYGTMVRLFGRAGYISA----AVSIFDEM 174
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E V + WK + + ++ A I A I + ++ G++P S+ YNI+IS +
Sbjct: 137 ESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRA 196
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--C 122
++ + +++K G K P+ T +T++ + + + L I M+
Sbjct: 197 GRMGHALKVFQEMKQAGVK-------PNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQDLA 249
Query: 123 CNLIL 127
C++I+
Sbjct: 250 CDIIV 254
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E++ L+T+ N +I + ++DEA+ + S+ G+EPD +YN++IS C K
Sbjct: 526 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 585
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ D + F+ ++KDNG + PD TY TL+ G A ++ +E++ EM+S
Sbjct: 586 SAISDANVLFH-KMKDNGHE-------PDNSTYNTLIRGCLKAGEIDKSIELISEMRS 635
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 27/225 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ A+R+DE Q+L + +GL ++ +YN LI + L+
Sbjct: 431 DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAA---- 486
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D Q+ S G PD T LL GF + L+ LE+ FE+ + LD +
Sbjct: 487 ---QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALEL-FEVIQMSKIDLDTVAYNI 542
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
++ + + E CS P G+ P Y M+ +
Sbjct: 543 IIHGMCKGSKVD-----------EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237
+ +M + E + L+ L G++D +++ +S
Sbjct: 592 NVLFHKMKDN-----GHEPDNSTYNTLIRGCLKAGEIDKSIELIS 631
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 41 ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
+ VE GL P +++N LI+ C++ + L+ N+ + G H D+ TY T+
Sbjct: 216 QMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV--------GKGLHIDVVTYGTI 267
Query: 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
+ G D +S L ++ +M+ ++ D ++A++D L G
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEE-THIKPDVVIYSAIIDRLCKDG 310
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I+ R +A ++L + +E+ + PD L++N LISA +K KL
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+++ +C PD TY +++ GF
Sbjct: 390 DEML---HRC----IFPDTVTYNSMIYGF 411
>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
Length = 661
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E++ L+T+ N +I + ++DEA+ + S+ G+EPD +YN++IS C K
Sbjct: 521 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 580
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ D + F+ ++KDNG + PD TY TL+ G A ++ +E++ EM+S
Sbjct: 581 SAISDANVLFH-KMKDNGHE-------PDNSTYNTLIRGCLKAGEIDKSIELISEMRS 630
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 27/225 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ A+R+DE Q+L + +GL ++ +YN LI + L+
Sbjct: 426 DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAA---- 481
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D Q+ S G PD T LL GF + L+ LE+ FE+ + LD +
Sbjct: 482 ---QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALEL-FEVIQMSKIDLDTVAYNI 537
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
++ + + E CS P G+ P Y M+ +
Sbjct: 538 IIHGMCKGSKVD-----------EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 586
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237
+ +M + E + L+ L G++D +++ +S
Sbjct: 587 NVLFHKMKDN-----GHEPDNSTYNTLIRGCLKAGEIDKSIELIS 626
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-----------ESVEKGLEPDSLSYNILISA- 60
++ + + N ++ RI EA + + VE GL P +++N LI+
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGL 231
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
C++ + L+ N+ + G H D+ TY T++ G D +S L ++ +M+
Sbjct: 232 CLEGRVLEAAALVNKMV--------GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME 283
Query: 121 SCCNLILDRSTFTAMVDALLYSG 143
++ D ++A++D L G
Sbjct: 284 E-THIKPDVVIYSAIIDRLCKDG 305
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I+ R +A ++L + +E+ + PD L++N LISA +K KL
Sbjct: 325 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 384
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+++ +C PD TY +++ GF
Sbjct: 385 DEML---HRC----IFPDTVTYNSMIYGF 406
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE + +LN I+ +++I+ + RIDEAY ILE + +KGL P+ ++N L+
Sbjct: 652 LFEE---AKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMD 708
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +KT+++D + + +K+ KCS P+ +TY+ L+ G + EM
Sbjct: 709 ALVKTEEIDEALICFQSMKE--MKCS-----PNTYTYSILINGLCRVQKYNKAFVFWQEM 761
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
+ LI + T+T M+ L G+I
Sbjct: 762 QK-QGLIPNVVTYTTMISGLAKVGNI 786
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 86/186 (46%), Gaps = 18/186 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
+ ++++ + L+ NAV++ ++ ++D+AY++LE ++ K + P +Y ++ K
Sbjct: 584 QAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKI 643
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+LD E+ K S G ++ Y++L+ GF + I+ EM
Sbjct: 644 DRLDEAYMLFEEAK-------SKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMK-KG 695
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L + T+ +++DAL+ + I AL F + + CS P + Y +++ L
Sbjct: 696 LTPNVYTWNSLMDALVKTEEID----EALICFQSMKEMKCS-----PNTYTYSILINGLC 746
Query: 185 ARVDYD 190
Y+
Sbjct: 747 RVQKYN 752
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I+ ++I R ++ ++I E + +G PD N + K +++
Sbjct: 489 NPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIF 548
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E +K S GF PD+ +Y+ L+ G A + I F+ S LD + A
Sbjct: 549 EDMK-------SFGFLPDVRSYSILIHGLTKAGQARETSNI-FQAMSQQGFALDARAYNA 600
Query: 135 MVDALLYSGSI 145
+VD L SG +
Sbjct: 601 VVDGLCKSGKV 611
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I A+R D+AY++LE + E+G P +S+N +++ K +K+D + + +K
Sbjct: 320 NTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK 379
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ + P+I TY ++ A + +I EM+ L + + MVD L
Sbjct: 380 DAK--------PNISTYNIIIDMLCMAGRVNEAYKIRDEME-LAGLFPNLLSVNIMVDRL 430
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
+ ++ A IF +R C+ P Y S++ L + D + +M
Sbjct: 431 CKANQLE----EAHRIFESASERGCN-----PNSVTYCSLIDGLGKKGKIDDAYRLFEKM 481
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +N +++ +A +++EA++I ES E+G P+S++Y LI K K+D
Sbjct: 419 NLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLF 478
Query: 75 EQLKDNGQKCSSGGFHPDIFT 95
E++ D G +P I+T
Sbjct: 479 EKMLDAGHDA-----NPIIYT 494
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 21/187 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
FEE E R N + N VI A + +RIDEA+++L S+ +GLEP+ L+YN++I+
Sbjct: 225 FFEEME---RNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVIN 281
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ +++ T + L + +K GF PD TY TL+ G+ + L + EM
Sbjct: 282 GLCRVGRIEET---SGVLAEMDRK----GFAPDGVTYNTLVNGYCKVGNFHQALVLHSEM 334
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
L D T+T++++ + +G++ A+ F ++ R GL P Y S+
Sbjct: 335 LR-NGLPPDVVTYTSLINTMCKAGNLN----RAMEFFDQMHVR-----GLRPNGVTYTSL 384
Query: 180 MHELAAR 186
++ + +
Sbjct: 385 INGFSQK 391
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68
R + + NA++ + R++EA +L +E KGL PD +SY+ +I+ + ++LD
Sbjct: 406 RSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELD 465
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
N ++ + G PD TY++L+ G + L ++ EM + +L+ D
Sbjct: 466 RAFQMNAEMVEK-------GVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLN-KSLLPD 517
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T+T++++ G + AL + E++K+ G P Y +++ L
Sbjct: 518 EFTYTSLINGYCKEGDLN----EALNLHDEMIKK-----GFLPDTVTYNVLINGL 563
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 32 RIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R +EA I E + K G+ +S++YN LI C K K+D + Q+ +N G
Sbjct: 372 RTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTEN-------GVE 424
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIK 146
P++ T++TL+ G+ ++LQ+ + I EM KS L D T+TAM+D GS+K
Sbjct: 425 PNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKS---LSPDVVTYTAMIDGHCKYGSMK 479
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E++ L+T+ N +I + ++DEA+ + S+ G+EPD +YN++IS C K
Sbjct: 526 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 585
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ D + F+ ++KDNG + PD TY TL+ G A ++ +E++ EM+S
Sbjct: 586 SAISDANVLFH-KMKDNGHE-------PDNSTYNTLIRGCLKAGEIDKSIELISEMRS 635
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 27/225 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ A+R+DE Q+L + +GL ++ +YN LI + L+
Sbjct: 431 DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAA---- 486
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D Q+ S G PD T LL GF + L+ LE+ FE+ + LD +
Sbjct: 487 ---QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALEL-FEVIQMSKIDLDTVAYNI 542
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
++ + + E CS P G+ P Y M+ +
Sbjct: 543 IIHGMCKGSKVD-----------EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237
+ +M + E + L+ L G++D +++ +S
Sbjct: 592 NVLFHKMKDN-----GHEPDNSTYNTLIRGCLKAGEIDKSIELIS 631
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 43 VEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLM 101
VE GL P +++N LI+ C++ + L+ N+ + G H D+ TY T++
Sbjct: 218 VEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV--------GKGLHIDVVTYGTIVN 269
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
G D +S L ++ +M+ ++ D ++A++D L G
Sbjct: 270 GMCKMGDTKSALNLLSKMEE-THIKPDVVIYSAIIDRLCKDG 310
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I+ R +A ++L + +E+ + PD L++N LISA +K KL
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+++ +C PD TY +++ GF
Sbjct: 390 DEML---HRC----IFPDTVTYNSMIYGF 411
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N ++ +DEAY++L+ + E+GL+PD SY+ L++ KT K+D+ +
Sbjct: 111 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 170
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--SCCNLILDRSTF 132
E DN S+G PD+ Y+TL+ G L ++ +M+ SC D TF
Sbjct: 171 E---DN----SNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSC---EPDVVTF 220
Query: 133 TAMVDAL 139
TA++D L
Sbjct: 221 TALMDGL 227
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 22 AVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
++++ + R+ EA ++L+ + K G +P+ ++Y LI A + K V E++ N
Sbjct: 432 SLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGN 491
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G P++ TY +L+ GF DL+ +++ ++ N D + M+D L
Sbjct: 492 G-------VQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLC 544
Query: 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+G + AL + E +K+ G P+ +YV+++ L
Sbjct: 545 RTGRMSA----ALELL-EAIKQ----SGTPPRHDIYVALIRGLC 579
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL-DVTMPF 73
+ + A+++ + R+ EA Q+LE++E + P+ ++Y+ LI KT ++ D F
Sbjct: 216 DVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVF 275
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ G P++ TY +L+ GF + S L ++ EM + + D T+
Sbjct: 276 KRMI--------VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA-TGCLPDIITYN 326
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167
++D L +G +FG++ + C NP
Sbjct: 327 TLIDGLCKTGRAPEANR----LFGDMKAKFC-NP 355
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + ++ AY +L+ + E GL P+ ++Y+ +I + K+D Q+ +
Sbjct: 46 NVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE 105
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
N G P++ TY TLL G + E++ EM+ L D+ ++ ++ L
Sbjct: 106 N-------GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRE-RGLQPDKFSYDTLMAGL 157
Query: 140 LYSGSI 145
+G I
Sbjct: 158 CKTGKI 163
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I +I+ +A R+ EA ++K G P+ +YN+LI+ K K+
Sbjct: 6 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--NLILDRST 131
+++K++ G P++ TY+T++ GF + + ++ +M ++ C NL+ T
Sbjct: 66 KEMKES-------GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV----T 114
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++ L +G + A + E+ +R GL P Y ++M L D+
Sbjct: 115 YNTLLSGLCRNGLMD----EAYELLDEMRER-----GLQPDKFSYDTLMAGLCKTGKIDM 165
Query: 192 VKSPYRRMWPDSTGTISPEV 211
+ +S G P+V
Sbjct: 166 ALKVFE---DNSNGDCPPDV 182
>gi|145356823|ref|XP_001422624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582867|gb|ABP00941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 744
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 47/223 (21%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NTI +A+I A +A++ D A+QI + + ++G+EP+ +Y+ L+ AC + K+ M
Sbjct: 111 KPNTITFSALINALGKAKQCDRAFQIFDEMNDRGIEPNIFTYSALLGACARAKQYQRAMD 170
Query: 73 FNEQLKDNG--------------QKCSSG----------------GFHPDIFTYATLLMG 102
+ L +N Q C G G +I TY +LM
Sbjct: 171 IFQDLIENHRDVEVDRITYGAAIQCCVQGRRADKAIEIFERMLASGIKGNIITYNAVLMA 230
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI-KVVGLYALCI------ 155
+ D E+ FE S + +DR+TF AM+ A + + KV+ Y +
Sbjct: 231 CEKSGDSDGAQEM-FERMSAEQVPMDRATFHAMIGACDRARQLSKVMDYYHMMPERGVTP 289
Query: 156 -FGEI--VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
G + V CSN P + + H+ AR +D+ ++P
Sbjct: 290 DAGTVSNVLMACSNA---KDPLTAIKVYHD--ARAKFDVHRTP 327
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKT 64
++ + +K VI+A +A + ++A + E + K G +P++++++ LI+A K
Sbjct: 68 VLRQSVFKPGAPAYTTVIKACGKASQWEKALKAYEMMTKLHGAKPNTITFSALINALGKA 127
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC 123
K+ D +++ D G P+IFTY+ LL AK Q ++I ++ ++
Sbjct: 128 KQCDRAFQIFDEMNDRG-------IEPNIFTYSALLGACARAKQYQRAMDIFQDLIENHR 180
Query: 124 NLILDRSTFTAMV 136
++ +DR T+ A +
Sbjct: 181 DVEVDRITYGAAI 193
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEP-DSLSYNILISACIKTKKLDVTMP 72
K N I NAV+ A ++ D A ++ E + P D +++ +I AC + ++L M
Sbjct: 218 KGNIITYNAVLMACEKSGDSDGAQEMFERMSAEQVPMDRATFHAMIGACDRARQLSKVMD 277
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + + G PD T + +LM +AKD + +++ + ++ ++ F
Sbjct: 278 YYHMMPERG-------VTPDAGTVSNVLMACSNAKDPLTAIKVYHDARAKFDVHRTPGMF 330
Query: 133 TAMVDAL 139
++ AL
Sbjct: 331 NNLIGAL 337
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I NA++ +A +++ A+ ++ES V+KG+ PD ++Y++L+ A K ++D +
Sbjct: 215 NVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 274
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G C+ PD T+ L+ G A + + +FE NL D TF A
Sbjct: 275 HGMASRG--CTPNVLVPDKVTFNILIAGACKAGNFEQ-ASALFEEMVAKNLQPDVMTFGA 331
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++D L +G ++ + + N G+ P Y +++H L
Sbjct: 332 LIDGLCKAGQVEA---------ARDILDLMGNLGVPPNVVTYNALVHGL 371
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA++ ++ RI+EA Q LE V G PDS++Y L+ A + + D +
Sbjct: 360 NVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLV 419
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+LK S G+ PD TY L+ G + + + ++ EM + D TF A
Sbjct: 420 SELK-------SFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQP-DSFTFAA 471
Query: 135 MVDALLYSGSI 145
L SG++
Sbjct: 472 CFSGLHRSGNL 482
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
++I +++ A A R D+A Q++ ++ G +PD+++YNIL+ K+ K + +
Sbjct: 395 DSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVL 454
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++ G + PD FT+A G + +L +E++ + + ++ D +T ++
Sbjct: 455 EEMVGKGHQ-------PDSFTFAACFSGLHRSGNLAGTMELLRVVLA-KGMLPDATTCSS 506
Query: 135 MVDALLYSGSI 145
++D + SG +
Sbjct: 507 ILDWVCRSGKL 517
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ + +I+ + +IDEA + + + G P+ ++YN L++ K K++
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 239
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCN---LILDRS 130
E + D G PD+ TY+ L+ F A + LE++ M S C L+ D+
Sbjct: 240 ESMVDK-------GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKV 292
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
TF ++ +G+ + A +F E+V +
Sbjct: 293 TFNILIAGACKAGNFE----QASALFEEMVAK 320
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N V+++ A A +I E G+ P ++YN +I+ K+ L M E+L
Sbjct: 5 NIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ G HPD+ TY TL+ A DL+ + +M S + + T++ +++
Sbjct: 65 ERGH-------HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS-RGCVPNVVTYSVLING 116
Query: 139 LLYSGSI 145
L G I
Sbjct: 117 LCKVGRI 123
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD 68
R+ + N +I ++ + ++ E VE+G PD ++YN LI + K L+
Sbjct: 30 RDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLE 89
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
+ + SS G P++ TY+ L+ G + E++ EM + C+++
Sbjct: 90 EARRLHGDM-------SSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLP 142
Query: 128 DRSTFTAMVDAL 139
+ T+ + +D L
Sbjct: 143 NIITYNSFLDGL 154
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTK 65
+++ E + N NA++ + R+ EAY++LE + GL+PD +YNIL+S K +
Sbjct: 406 LMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQE 465
Query: 66 KLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ + FN+ LK G PDI +Y TL+ F ++ E+ FE
Sbjct: 466 NIRQALALFNKMLKI--------GIQPDIHSYTTLIAVFCRENRMKE-SEMFFEEAVRIG 516
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+I T+T+M+ G++ + A+ F + S+ G P Y +++ L
Sbjct: 517 IIPTNKTYTSMICGYCREGNLTL----AMKFFHRL-----SDHGCAPDSITYGAIISGLC 567
Query: 185 ARVDYDIVKSPYRRM 199
+ D +S Y M
Sbjct: 568 KQSKRDEARSLYDSM 582
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKT 64
E+ ++ + I N VI+ +++R+D AY++ L+ + GL PD ++Y+I+IS+ K
Sbjct: 1218 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKW 1277
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ +D E + N GF P TY TL+ GF +L LEI+
Sbjct: 1278 RFMDEANNVLELMLKN-------GFDPGAITYGTLIDGFCKTGNLDKALEIL-------Q 1323
Query: 125 LILDRS------TFTAMVDALLYSGSIKVVG 149
L+L + TF+ +D L G ++ G
Sbjct: 1324 LLLSKGSYPDVVTFSIFIDWLSKRGRLRQAG 1354
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISA 60
+F+E +NR+ K + V +++ +A + +A + K PDS++YN +I+
Sbjct: 183 LFDE---MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMING 239
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K+ +LD + E++ DN GF P++F+Y T+L GF A +++ L ++ +M
Sbjct: 240 LSKSDRLDDAIRLLEEMVDN-------GFAPNVFSYNTVLHGFCKANRVENALWLLEQM 291
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
+ R N + N +I+ + RIDEAY +LE V+ G +P+ ++Y +L+ A K K
Sbjct: 1009 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 1068
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
+ + E + + G+ P++FTY +LL F +++ +++ M K C
Sbjct: 1069 AEDAIGLVEVMVEK-------GYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVP 1121
Query: 125 LILDRSTFTA 134
++ +T A
Sbjct: 1122 NVVSYNTVIA 1131
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N+V++ +++RI++A+ + + + G+ PD ++Y+I+I + K LD
Sbjct: 509 DVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKML 568
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-C--NLILDRST 131
E++K+ KC PD+ TY+ L+ G A + ++ EM C C NL+ T
Sbjct: 569 ERMKE--AKCV-----PDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLV----T 617
Query: 132 FTAMVDAL 139
+ ++D L
Sbjct: 618 YNTLIDGL 625
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N V+ +A R++ A +LE V +G PD +SY +I+ K ++D
Sbjct: 264 NVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVM 323
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ G P++ TY TL+ GF DL +E+V +M
Sbjct: 324 DKMIQRG-------CQPNVITYGTLVDGFCRVGDLDGAVELVRKM 361
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+A + R+D AY++ + E G P+ ++YN L+ K+++ D
Sbjct: 1157 DIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLL 1216
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ Q CS PDI TY T++ G +K + ++ +M S L D T++
Sbjct: 1217 REMTRK-QGCS-----PDIITYNTVIDGLCKSKRVDRAYKLFLQMLS-DGLAPDDVTYSI 1269
Query: 135 MVDAL 139
++ +L
Sbjct: 1270 VISSL 1274
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ + ++++A ++LE + K PDS++Y LI+ +L+
Sbjct: 614 NLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVL 673
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++KD G PD TY TLL + +L+ + +++ EM++
Sbjct: 674 REMKDKG-------CLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E++ + + I +I+ + +D+A +IL+ + KG PD ++++I I K
Sbjct: 1288 ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 1347
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+L E + G PD TY TLL GF A + +++ FE+ C
Sbjct: 1348 GRLRQAGELLETML-------RAGLVPDTVTYNTLLKGFCDASLTEDAVDL-FEVMRQCG 1399
Query: 125 LILDRSTFTAMVDALLYSGSIK 146
D +T+T +V L+ S K
Sbjct: 1400 CEPDNATYTTLVGHLVDKKSYK 1421
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLD 68
R + + ++ +I+A +A ID A ++L S+ PD ++Y+ILI A K K+L
Sbjct: 433 RRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLP 492
Query: 69 VTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFTYATLL 100
+ + + N + + G PD+ TY+ ++
Sbjct: 493 EAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVI 552
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
F +L S +++ MK + D T++A+++ L +G++
Sbjct: 553 HSFCKDNNLDSAFKMLERMKE-AKCVPDVVTYSALINGLCKAGTV 596
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLD 68
++E + +T N +++A +R +A Q+ + + P+ ++ ILI + +
Sbjct: 836 SQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRN-KLCCSPNMFTFTILIHGLCRAGDIG 894
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+++ +G ++ + ++ G A+ L S LE+ EM+ + D
Sbjct: 895 TAYELLKEMPRHG-------VPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPD 947
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
T++ +VD+L+ SG + A + ++V + CS P Y S++H L
Sbjct: 948 VFTYSTIVDSLVKSGKVD----DACRLVEDMVSKGCS-----PNVVTYSSLLHGLCKAGK 998
Query: 189 YDIVKSPYRRM 199
D + +RM
Sbjct: 999 LDEATALLQRM 1009
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + ++++ ++ ++D+A +++E V KG P+ ++Y+ L+ K KLD
Sbjct: 947 DVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALL 1006
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK-----DLQSLLEIVFEMKSCCNLILDR 129
+++ +G CS P+I TY T++ G H K + LLE + + N++
Sbjct: 1007 QRMTRSG--CS-----PNIVTYNTIIDG--HCKLGRIDEAYHLLEEMVDGGCQPNVV--- 1054
Query: 130 STFTAMVDALLYSG 143
T+T ++DA G
Sbjct: 1055 -TYTVLLDAFCKCG 1067
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ N I N ++ ++ A+Q+L+ ++ G PD+++Y+ +IS K KL
Sbjct: 366 YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAH 425
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
EQ+ G + PD+ +TL+ A + S E++
Sbjct: 426 DLLEQMIRRGCR-------PDVACLSTLIDALCKAAAIDSAQELL 463
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
EI+ ++ ++I +I A R++EA+++L E +KG PD ++Y L+ A KT
Sbjct: 639 EIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKT 698
Query: 65 KKLDV 69
L++
Sbjct: 699 NNLEL 703
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
E++ + + N N++++ + ++ A Q+L S ++KG P+ +SYN +I+ K
Sbjct: 1077 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 1136
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K+ + EQ+ N C PDI T+ T++
Sbjct: 1137 TKVHEGVLLLEQMLSN--NCV-----PDIVTFNTII 1165
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTK 65
++++ K + + NA++E + + EA ++ V++GLEPD L+YN+LI KTK
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+D M ++L + P I +Y +L+ G ++ + + +++ EM
Sbjct: 350 MVDEAMVLFKEL-------CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ- 401
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
D T+ ++DAL G I L AL + ++K+ G+ P Y +MM
Sbjct: 402 PPDVVTYNILIDALCKEGRI----LEALGVLVMMMKK-----GVKPNIVTYNAMMDGYCL 452
Query: 186 RVDYDIVKSPYRRM 199
R + ++ K + RM
Sbjct: 453 RNNVNVAKDIFNRM 466
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 22/192 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+A + RI EA +L ++KG++P+ ++YN ++ ++V
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA---- 459
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
KD + G PDI Y L+ G+ + + + + EM+ NLI D +++ +
Sbjct: 460 ---KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH-KNLIPDIASYNS 515
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++D L G I V E++ +C + G P Y ++ +D S
Sbjct: 516 LIDGLCNLGRIPHV--------QELLDEMCDS-GQSPDVITYNILLDAFCKTQPFDKAIS 566
Query: 195 PYRR----MWPD 202
+R+ +WPD
Sbjct: 567 LFRQIVEGIWPD 578
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 24/229 (10%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD 68
++ K N + NA+++ ++ A I V+ GLEPD L+YN+LI+ KT+ +D
Sbjct: 433 KKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVD 492
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+ ++++ PDI +Y +L+ G + + + E++ EM D
Sbjct: 493 EAIVLFKEMRHK-------NLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD-SGQSPD 544
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
T+ ++DA + A+ +F +IV+ G+WP + +++ L
Sbjct: 545 VITYNILLDAFCKTQPFD----KAISLFRQIVE------GIWPDFYTNHAIVDNLCKGEK 594
Query: 189 YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237
+ + + + SP VQ +L+ A DG A+ LS
Sbjct: 595 LKMAEDALKHLLMHGC---SPNVQTYT--ILINALCKDGSFGEAMLLLS 638
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
E + + + NA+++ +++R EA ++L+ +E G P S++YN LISA K L+
Sbjct: 293 EGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEE 352
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ Q+ G K PD+FTY TLL GF A +++ EM++
Sbjct: 353 ALDLKTQMVHKGIK-------PDVFTYTTLLSGFEKAGKDDFAIQVFLEMRA 397
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 1 IFEENEIVNREH---WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
+ + +EI+N H + + N+++ ++ ++ +IL E +EKG++PD +SYN
Sbjct: 630 VAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNT 689
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I A + ++ ++KD+ PD+ TY T + + +++V
Sbjct: 690 VIYAYCRNGRMKEASRIFSEMKDS-------ALVPDVVTYNTFIATYAADSMFAEAIDVV 742
Query: 117 -FEMKSCCNLILDRSTFTAMVD 137
+ +K C D++T+ ++VD
Sbjct: 743 RYMIKQGCK--PDQNTYNSIVD 762
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 17 TIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTM---- 71
++ N++I A + ++EA + + V KG++PD +Y L+S K K D +
Sbjct: 334 SVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFL 393
Query: 72 ------------PFNEQLKDNGQKCSSGGF---------------HPDIFTYATLLMGFR 104
FN +K +G + G F PDI T+ TLL F
Sbjct: 394 EMRAVGCKPNICTFNALIKMHGNR---GKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFG 450
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+ S + +F+ + +R TF ++ A GS
Sbjct: 451 Q-NGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSF 490
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
+G+ PD +YN LIS C + + + +Q+K GF PD TY LL F
Sbjct: 258 RGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLE-------GFTPDKVTYNALLDVFG 310
Query: 105 HAKDLQSLLEIVFEMKS 121
++ Q ++++ EM++
Sbjct: 311 KSRRPQEAMKVLQEMEA 327
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKT 64
E+ ++ + I N VI+ +++R+D AY++ L+ + GL PD ++Y+I+IS+ K
Sbjct: 490 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKW 549
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ +D E + N GF P TY TL+ GF +L LEI+
Sbjct: 550 RFMDEANNVLELMLKN-------GFDPGAITYGTLIDGFCKTGNLDKALEIL-------Q 595
Query: 125 LILDRS------TFTAMVDALLYSGSIKVVG 149
L+L + TF+ +D L G ++ G
Sbjct: 596 LLLSKGSYPDVVTFSIFIDWLSKRGRLRQAG 626
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 114/251 (45%), Gaps = 38/251 (15%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL 67
+NR+ K + V +++ +A + +A + K PDS++YN +I+ K+ +L
Sbjct: 1 MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE--MKSCCNL 125
D + E++ DN GF P++F+Y T+L GF A +++ L ++ + M+ C
Sbjct: 61 DDAIRLLEEMVDN-------GFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPD 113
Query: 126 ILDRSTF-------------TAMVDALLYSGSIKVVGLYALCIFG-----------EIVK 161
++ +T ++D ++ G V Y + G E+V+
Sbjct: 114 VVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVR 173
Query: 162 RVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLME 221
++ + G P Y ++MH L + D ++ M + +G+ P+V + +++
Sbjct: 174 KM-TERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEM--EESGSCPPDVFTYS--TIVD 228
Query: 222 AALNDGQVDLA 232
+ + G+VD A
Sbjct: 229 SLVKSGKVDDA 239
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
+ R N + N +I+ + RIDEAY +LE V+ G +P+ ++Y +L+ A K K
Sbjct: 281 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 340
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
+ + E + + G+ P++FTY +LL F +++ +++ M K C
Sbjct: 341 AEDAIGLVEVMVEK-------GYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVP 393
Query: 125 LILDRSTFTA 134
++ +T A
Sbjct: 394 NVVSYNTVIA 403
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+A + R+D AY++ + E G P+ ++YN L+ K+++ D
Sbjct: 429 DIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLL 488
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ Q CS PDI TY T++ G +K + ++ +M S L D T++
Sbjct: 489 REMTRK-QGCS-----PDIITYNTVIDGLCKSKRVDRAYKLFLQMLS-DGLAPDDVTYSI 541
Query: 135 MVDAL 139
++ +L
Sbjct: 542 VISSL 546
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E++ + + I +I+ + +D+A +IL+ + KG PD ++++I I K
Sbjct: 560 ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 619
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+L E + G PD TY TLL GF A + +++ FE+ C
Sbjct: 620 GRLRQAGELLETML-------RAGLVPDTVTYNTLLKGFCDASRTEDAVDL-FEVMRQCG 671
Query: 125 LILDRSTFTAMVDALLYSGSIK 146
D +T+T +V L+ S K
Sbjct: 672 CEPDNATYTTLVGHLVDKKSYK 693
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVT 70
++ N I N ++ +++D A Q+ + +E+ PD +Y+ ++ + +K+ K+D
Sbjct: 180 YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 239
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--NLIL 127
E + S G P++ TY++LL G A L ++ M +S C N++
Sbjct: 240 CRLVEAM-------VSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIV- 291
Query: 128 DRSTFTAMVDALLYSGSI 145
T+ ++D G I
Sbjct: 292 ---TYNTIIDGHCKLGRI 306
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 19/129 (14%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+ ++++ ++ ++D+A +++E+ V KG P+ ++Y+ L+ K KLD +++
Sbjct: 224 STIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTR 283
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAK-----DLQSLLEIVFEMKSCCNLILDRSTFTA 134
+G CS P+I TY T++ G H K + LLE + + N++ T+T
Sbjct: 284 SG--CS-----PNIVTYNTIIDG--HCKLGRIDEAYHLLEEMVDGGCQPNVV----TYTV 330
Query: 135 MVDALLYSG 143
++DA G
Sbjct: 331 LLDAFCKCG 339
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
E++ + + N N++++ + ++ A Q+L S ++KG P+ +SYN +I+ K
Sbjct: 349 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 408
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K+ + EQ+ N C PDI T+ T++
Sbjct: 409 TKVHEGVLLLEQMLSN--NCV-----PDIVTFNTII 437
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTK 65
++++ K + + NA++E + + EA ++ V++GLEPD L+YN+LI KTK
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+D M ++L + P I +Y +L+ G ++ + + +++ EM
Sbjct: 350 MVDEAMVLFKEL-------CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ- 401
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
D T+ ++DAL G I L AL + ++K+ G+ P Y +MM
Sbjct: 402 PPDVVTYNILIDALCKEGRI----LEALGVLVMMMKK-----GVKPNIVTYNAMMDGYCL 452
Query: 186 RVDYDIVKSPYRRM 199
R + ++ K + RM
Sbjct: 453 RNNVNVAKDIFNRM 466
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 22/192 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+A + RI EA +L ++KG++P+ ++YN ++ ++V
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA---- 459
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
KD + G PDI Y L+ G+ + + + + EM+ NLI D +++ +
Sbjct: 460 ---KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH-KNLIPDIASYNS 515
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++D L G I V E++ +C + G P Y ++ +D S
Sbjct: 516 LIDGLCNLGRIPHV--------QELLDEMC-DSGQSPDVITYNILLDAFCKTQPFDKAIS 566
Query: 195 PYRR----MWPD 202
+R+ +WPD
Sbjct: 567 LFRQIVEGIWPD 578
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 28/231 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD 68
++ K N + NA+++ ++ A I V+ GLEPD L+YN+LI+ KT+ +D
Sbjct: 433 KKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVD 492
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN--LI 126
+ ++++ PDI +Y +L+ G + + + E++ EM C+
Sbjct: 493 EAIVLFKEMRHK-------NLIPDIASYNSLIDGLCNLGRIPHVQELLDEM---CDSGQS 542
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
D T+ ++DA + A+ +F +IV+ G+WP + +++ L
Sbjct: 543 PDVITYNILLDAFCKTQPFD----KAISLFRQIVE------GIWPDFYTNHAIVDNLCKG 592
Query: 187 VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237
+ + + + SP VQ +L+ A DG A+ LS
Sbjct: 593 EKLKMAEDALKHLLMHGC---SPNVQTYT--ILINALCKDGSFGEAMLLLS 638
>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
Length = 770
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N NA+I + + EA ++L++ V+ G+E D ++YNI+I C K K++ +
Sbjct: 460 VNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAI-- 517
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
QL+D+ K GF PD+FT+ T L + + ++ +L ++ +MKS L D T+
Sbjct: 518 --QLRDDMIK---RGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKS-EGLKPDIVTYG 571
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
++D + + Y + E++K GL P +Y +++
Sbjct: 572 TIIDGYCKAKDVHKANKYLI----ELIKN-----GLRPNAVIYNALI 609
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNI 56
+FE E+ N ++KLN + +I+ +A +++ A+++ E + ++GL+PD ++YNI
Sbjct: 463 LFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNI 522
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I K ++D E++++NG C+ PDI Y TLL GF L+ +++++
Sbjct: 523 MIHGFCKVGQVDNANILFEKMEENG--CT-----PDIIAYNTLLCGFCEGNKLEEVIKLL 575
Query: 117 FEM 119
+M
Sbjct: 576 HKM 578
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
N I N++I+ ++ A ++ S+ KGLEPD +SY LI+ KT K+ M +
Sbjct: 341 NLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLY 400
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAK 107
NE L+ G P++ TY TLL G F+ K
Sbjct: 401 NEMLQV--------GKSPNVTTYGTLLKGLFQKGK 427
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 30/162 (18%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K I + +I+ + R DEA ++ E ++ +G+ PD +SY+ LI K D +
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293
Query: 73 FNEQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFR 104
+++ D G + C G G P++ TY +L+ GF
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC 353
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
DL S E+ M S L D ++T +++ + +K
Sbjct: 354 MVGDLNSARELFLSMPS-KGLEPDEISYTTLINGYCKTWKVK 394
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+K + N +I +A RID+A Q+ E + +GL PD ++YN LI + +L
Sbjct: 25 YKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQ 84
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
+ + NG PD+F Y+ LL G L + M+S +L D
Sbjct: 85 DLFKNMHKNGN-------LPDLFAYSILLDGLCKQGYLGKAFRLFRAMQS-SSLKPDLVM 136
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ +VDA+ SG++K A +F E+ + GL P +Y ++++ L D
Sbjct: 137 YNILVDAMCKSGNLKD----ARELFSELFVK-----GLQPNVQIYTTIINGLCKEGLLDE 187
Query: 192 VKSPYRRMWPDS 203
+R M D
Sbjct: 188 ALEAFRNMEEDG 199
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + ++ N +++A ++ + +A ++ E KGL+P+ Y +I+ K LD +
Sbjct: 131 KPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALE 190
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++++G C PD F+Y ++ GF KD + ++ EM+
Sbjct: 191 AFRNMEEDG--CP-----PDEFSYNVIIRGFLQHKDESRAVHLIGEMR 231
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I+ + R +A ++L+ + E+G+ PD+ YN LI K KK+D F
Sbjct: 454 NVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFL 513
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +N GF PD FTY + G+ A + S + V EM C +I ++ T
Sbjct: 514 LEMVEN-------GFKPDAFTYGAFISGYIEAGEFASADKYVKEMLE-CGVIPNKVLCTG 565
Query: 135 MVDALLYSGSI 145
+++ G +
Sbjct: 566 LINEYCKKGKV 576
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 34/154 (22%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTM 71
K T++MN +++ + +++A +I + KG+ PD SY LI K + +
Sbjct: 596 KTYTVLMNGLVKNGK----VNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASS 651
Query: 72 PFNEQLKDN------------GQKCSSG---------------GFHPDIFTYATLLMGFR 104
F+E ++ G C SG GF P+ TY T++ G+
Sbjct: 652 IFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYC 711
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ DL ++ EMK L+ D +T +VD
Sbjct: 712 KSGDLAEAFQLFDEMK-LKGLVPDSFVYTTLVDG 744
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N ++ +I + ++ EA S VE+G+ D+ +Y +L++ +K K+ D F
Sbjct: 559 NKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIF 618
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+E G PD+F+Y TL+ GF ++Q I EM
Sbjct: 619 HEM--------RGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEM 656
>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
Length = 586
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 22/170 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + +V N +IE QR EA ++ E ++ KG P+ +Y +LI K K+D+ M
Sbjct: 356 KPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMR 415
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRS 130
E+++D G + PD+ TY LL+G+ +AK + + ++ EM K C D
Sbjct: 416 CFEEMQDVGCQ-------PDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGC---PPDGR 465
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
T+ A++ L + + + A I+ +++K+ GL P H Y MM
Sbjct: 466 TYNALIKLL----TNRNMPDDAARIYKKMIKK-----GLEPTIHTYNMMM 506
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 111/245 (45%), Gaps = 28/245 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN ++ N VI ++ EA ++ E++ KG PD+ +Y+ILI K +L M
Sbjct: 305 ELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMK 364
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHA--KDLQSLLEIVFEMKSCCNLILDR 129
+++D GF P I TY LL F R+ +++++LE++ + NL
Sbjct: 365 LLREMEDK-------GFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYN 417
Query: 130 STFTA------MVDALLYSGSIKVVGLYA-LCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
A M DA+ + +K G +C + I+ +C+N + +L+ +++HE
Sbjct: 418 GMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHE 477
Query: 183 --LAARVDYDIVKSPYRR--MWPDSTGTISPEVQEEAG------HLLMEAALNDGQVDLA 232
+A + Y+ + R W D+ + V + L++A DG VD +
Sbjct: 478 GVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRS 537
Query: 233 LDKLS 237
+ LS
Sbjct: 538 IMLLS 542
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 13/98 (13%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + N +I+A +D + +L E EKG++P+++SYN+LIS KT+++ +
Sbjct: 516 LDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALEL 575
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLL-----MGFRHA 106
++++ + PDI TY TL+ MG+ HA
Sbjct: 576 SKEMLNQ-------ELTPDIVTYNTLINGLCKMGWMHA 606
>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
Length = 632
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 22/170 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + +V N +IE QR EA ++ E ++ KG P+ +Y +LI K K+D+ M
Sbjct: 356 KPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMR 415
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRS 130
E+++D G C PD+ TY LL+G+ +AK + + ++ EM K C D
Sbjct: 416 CFEEMQDVG--C-----QPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGC---PPDGR 465
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
T+ A++ L + + + A I+ +++K+ GL P H Y MM
Sbjct: 466 TYNALIKLL----TNRNMPDDAARIYKKMIKK-----GLEPTIHTYNMMM 506
>gi|356520039|ref|XP_003528673.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 585
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 29 EAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
++ EA +I+ V K GL P+ ++YNILI+ K+D + QLK N
Sbjct: 351 RGKKFGEAVKIVHQVNKVGLSPNIVTYNILINGFCDVGKIDTAVRLFNQLKSN------- 403
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G P + TY TL+ G+ ++L L++V EM+ C + + T+ ++DA
Sbjct: 404 GLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC-IPPSKVTYXILIDAF 454
>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
Length = 378
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 22/170 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + +V N +IE QR EA ++ E ++ KG P+ +Y +LI K K+D+ M
Sbjct: 102 KPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMR 161
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRS 130
E+++D G C PD+ TY LL+G+ +AK + + ++ EM K C D
Sbjct: 162 CFEEMQDVG--C-----QPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGC---PPDGR 211
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
T+ A++ L + + + A I+ +++K+ GL P H Y MM
Sbjct: 212 TYNALIKLL----TNRNMPDDAARIYKKMIKK-----GLEPTIHTYNMMM 252
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 22/167 (13%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
++++ + N + N +I ++ A ++L+ + K G P+SLSYN ++ A K KK
Sbjct: 287 MSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKK 346
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
+D M F E + S G +PDI +Y TLL ++ + +E++ ++ K C
Sbjct: 347 MDRAMAFVELM-------VSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTP 399
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
+++ ++ ++D L +G K AL + E+V + GL P
Sbjct: 400 VLI---SYNTVIDGLTKAGKTK----EALELLNEMVTK-----GLQP 434
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + EA ++L E V KGL+PD ++Y+ + S + +++ + +
Sbjct: 402 ISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCK 461
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++D G P+ Y +L+G ++ + +++ M S + + ST+T ++
Sbjct: 462 VQDM-------GIRPNTVLYNAILLGLCKRRETHNAIDLFIYMIS-NGCMPNESTYTILI 513
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172
+ L Y G +K A + GE+ R + GL K
Sbjct: 514 EGLTYEGLVK----EARELLGELCSRGVVSKGLINK 545
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIK 63
NE++ R + NTI N++I +R+DEA Q+++ V KG +PD +YNILI+ K
Sbjct: 359 NEMITR-GIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCK 417
Query: 64 TKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFT 95
K++D M ++ G Q+ S G HP I T
Sbjct: 418 AKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMT 477
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSC 122
YA LL G +L+ L I+ +M C
Sbjct: 478 YAILLDGLCDNGELEEALGILDQMHKC 504
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
+L+ + N +I A ++D+A+ + S+ KG++ D SYNI++S K L
Sbjct: 507 ELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADA 566
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++K++G + PD TY TL+ D+ + ++++ EMK C D ST
Sbjct: 567 LFRKMKEDG-------YEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKR-CGFSSDASTV 618
Query: 133 TAMVDALLYSGSI 145
++D +L SG +
Sbjct: 619 KIVMD-MLSSGEL 630
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 28/170 (16%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
++N + ++ A +D +L +E + ++P ++Y I+I K +LD + F ++
Sbjct: 236 ILNRMCKSGNTASALD----LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEM 291
Query: 78 KDNGQKCSSGGFHPDIFTYATLL---MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G K ++FTY +L+ F D LL + K N++ TF+A
Sbjct: 292 ETKGIK-------ANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVV----TFSA 340
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++D+L+ G + A ++ E++ R G+ P Y S+++ L
Sbjct: 341 LIDSLVKEGKLT----EAKDLYNEMITR-----GIEPNTITYNSLIYGLC 381
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 41/197 (20%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N NA+I E + + A ++L + V KG+E D+++YNI+I C K K++ +
Sbjct: 475 INIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKL 534
Query: 74 NEQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRH 105
+ + G K C G G PD+ +Y T++ G+
Sbjct: 535 RDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCK 594
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI-VKRVC 164
AKD+Q E + E+ + C L + + A++ +G+I G I V
Sbjct: 595 AKDIQKANEYLNELMA-CGLKPNAVIYNALIGGYGRNGNIS----------GAIGVLDTM 643
Query: 165 SNPGLWPKPHLYVSMMH 181
+ G+ P Y S+MH
Sbjct: 644 ESIGIQPTNVTYCSLMH 660
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 42/259 (16%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
+H K + NAVI +A R+D A ++L+ ++K G EPD ++YNILI +LD+
Sbjct: 140 KHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDL 199
Query: 70 TMPFNEQL-KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+ +QL KDN + P + TY L+ + ++++ EM S L D
Sbjct: 200 ALRVMDQLLKDNCK--------PTVITYTILIEATITQGGIDEAMKLLDEMLSR-GLRPD 250
Query: 129 RSTFTAMVDALLYSGSIKVVGLYAL------CIFG----EIVKRVCSNPGLW-------- 170
R T+ +V+ + G + + C+ G I+ R N G W
Sbjct: 251 RYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMS 310
Query: 171 --------PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEA 222
P P Y +++ L D K+ + M + ++P+ + L+ A
Sbjct: 311 DMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKA---LAPD--GYSYDPLISA 365
Query: 223 ALNDGQVDLALDKLSNTIT 241
+G+VDLA++ L + I+
Sbjct: 366 LCREGKVDLAIEFLDDMIS 384
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 20/171 (11%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK 66
+VNR +K + I+ +I+ ++I++A Q++E +EK +PD +YN +IS K +
Sbjct: 103 MVNR-GYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADR 161
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNL 125
+D +++K GF PD+ TY L+ F L L ++ + +K C
Sbjct: 162 VDHASKVLDRMKKR-------GFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKP 214
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
+ T+T +++A + G I A+ + E++ R GL P + Y
Sbjct: 215 TV--ITYTILIEATITQGGID----EAMKLLDEMLSR-----GLRPDRYTY 254
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I + +I A +IDEA +L+ + EK L PD SY+ LISA + K+D+ + F
Sbjct: 320 NPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFL 379
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + SGG PDI +Y ++L + L I FE + ++
Sbjct: 380 DDM-------ISGGHLPDILSYNSILASLCKNGNADEALNI-FEKLGEVGCPPNAGSYNT 431
Query: 135 MVDALLYSG-SIKVVGL 150
+ AL SG I+ +G+
Sbjct: 432 LFGALWSSGDKIRALGM 448
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD 68
+++ K I +IEA+ IDEA ++L E + +GL PD +YN++++ K LD
Sbjct: 209 KDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLD 268
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
F ++ NG C +G + TY LL
Sbjct: 269 RAFEFLSRISKNG--CVAG-----VSTYNILL 293
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 15/109 (13%)
Query: 39 ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD--NGQKCSSGGFHPDIFTY 96
ILE + G++PD ++YN LIS + +D + E L D +KC P + +Y
Sbjct: 449 ILEMLSNGIDPDEITYNSLISCLCRDGLVDQAI---ELLVDMFESEKC-----QPTVISY 500
Query: 97 ATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSG 143
T+L+G + + +E++ M + C + + +T+T ++ + ++G
Sbjct: 501 NTVLLGLCKVQRIIDAIEVLAAMVNEGC---LPNETTYTLLIQGIGFAG 546
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 24/188 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I A A++++EA ++LE + E+G P+ ++YN+L+ A K +
Sbjct: 178 NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA---- 233
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
+D +K GGF P++ T+ +L+ GF + D + LL I+ N++ T
Sbjct: 234 ---QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVV----T 286
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
++A++D L S L A + E+ R G+ P Y +++H L +
Sbjct: 287 YSALIDGLCKSQKF----LEAKEVLEEMKTR-----GVTPDAFTYSALIHGLCKADKIEE 337
Query: 192 VKSPYRRM 199
+ RRM
Sbjct: 338 AEQMLRRM 345
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +I+ + R++EA +L+ +++ G P+ ++Y LIS K +K+D
Sbjct: 459 DVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVM 518
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
E++++ G P++ TY T++ G K+ Q L++ + + ++ C+ D +T
Sbjct: 519 EEMRN-------AGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECS--PDAAT 569
Query: 132 FTAMVDALLYS 142
+ +V+AL+ S
Sbjct: 570 YRTIVNALMSS 580
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
EPD SYNI+IS L + E++K S GF PD FT+ ++ +A
Sbjct: 109 EPDVCSYNIVISGFCNAGDLHAALELLEEMK-------SAGFAPDAFTHTPIITAMANAG 161
Query: 108 DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
DL ++ + M N++ T+TA++ A + ++ A+ + E+ +R C
Sbjct: 162 DLDGAMDHLRSMGCDPNVV----TYTALIAAFARAKKLE----EAMKLLEEMRERGC 210
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ R N + +I +A+++DEA +++E + G P+ ++YN +++ + +
Sbjct: 486 MKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGR 545
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ +++KD +CS PD TY T++ + +Q +++ +MKS
Sbjct: 546 IKEAQQLVQRMKDGRAECS-----PDAATYRTIVNALMSSDLVQEAEQLLEQMKS 595
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N VI A + A ++LE ++ G PD+ ++ +I+A LD M + L+
Sbjct: 116 NIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAM---DHLR- 171
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CC--NLILDRSTFTAMV 136
S G P++ TY L+ F AK L+ ++++ EM+ C NL+ T+ +V
Sbjct: 172 ------SMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLV----TYNVLV 221
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
DAL + +VG ++VK++ G P + S++ R + D
Sbjct: 222 DALC---KLSMVGAAQ-----DVVKKMIEG-GFAPNVMTFNSLVDGFCKRGNVD 266
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+ ++Q+ EA ++LE ++ +G+ PD+ +Y+ LI K K++
Sbjct: 283 NVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQML 342
Query: 75 EQLKDNGQK-------------CSSGGF---------------HPDIFTYATLLMGFRHA 106
++ +G C SG PD+ TY T++ G
Sbjct: 343 RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 402
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142
+ I+ +M+ +++ D T++ +++ L S
Sbjct: 403 GKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKS 438
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 22/167 (13%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
++R+ N + N +I ++ A +IL+ + K G P+SLSYN ++ A K KK
Sbjct: 283 MSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKK 342
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
+D M F E + S G +PDI +Y TLL ++ + +E++ ++ K C
Sbjct: 343 MDRAMAFVELM-------VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTP 395
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
+++ ++ ++D L +G + AL + E+V + GL P
Sbjct: 396 VLI---SYNTVIDGLTKAGKTE----EALELLNEMVTK-----GLQP 430
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + +EA ++L E V KGL+PD ++Y+ + S + +++ + +
Sbjct: 398 ISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCK 457
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++D G P+ Y +L+G + S +++ M S + + ST+T ++
Sbjct: 458 VQDM-------GIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVS-NGCMPNESTYTILI 509
Query: 137 DALLYSGSIK 146
+ L Y G +K
Sbjct: 510 EGLAYEGLVK 519
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 22/188 (11%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L N++I+A +A +A + + + GL PD+ ++N+L++A K K++D
Sbjct: 87 LTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKL 146
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRST 131
E++++ Q CS P++ TY+ L+ ++ L++ +MKS C I T
Sbjct: 147 FEEMQN--QNCS-----PNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIF---T 196
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+T+M+D L SG + A +F E+ ++ GL +Y S++H L D
Sbjct: 197 YTSMIDGLGKSGHVD----KAFFLFEEM-----TSEGLVATRVVYNSLIHGLGRSGRADA 247
Query: 192 VKSPYRRM 199
+R M
Sbjct: 248 AAKLFREM 255
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
IF+E V L+ + N +I+ +++R+DEA++I +E+ GL PD ++N L+
Sbjct: 286 IFQEARDVG---CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMD 342
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K+ ++ +K G C+ PD+ Y TL+ G R + ++ +++ EM
Sbjct: 343 GLCKSGRIHDAFILLGDMKRAG--CT-----PDVTVYNTLIDGLRKSGRVEEAGQLLLEM 395
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
+S D T+ ++D G I+ AL +F EI + +N
Sbjct: 396 QS-LGYEPDVVTYNTLIDESCKGGRIED----ALRLFEEISAKGFAN 437
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 32/123 (26%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ V N +I+ R++ R++EA Q+L ++ G EPD ++YN LI K +++ +
Sbjct: 368 DVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLF 427
Query: 75 EQLKDNG-------------------------------QKCSSGGFHPDIFTYATLLMGF 103
E++ G Q+ G PD TY TLL G
Sbjct: 428 EEISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGA 487
Query: 104 RHA 106
R A
Sbjct: 488 RQA 490
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 30 AQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
A R EA +I E+ + G D YN+LI K+K+LD +L+++ G
Sbjct: 277 AGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEED-------G 329
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
PD++T+ L+ G + + ++ +MK D + + ++D L SG ++
Sbjct: 330 LVPDVYTFNALMDGLCKSGRIHDAFILLGDMKR-AGCTPDVTVYNTLIDGLRKSGRVEEA 388
Query: 149 G 149
G
Sbjct: 389 G 389
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N NA+I E + + EA +++++ + KG+E DS++YNI+I C K K++
Sbjct: 465 VNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKME----- 519
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E +K +G + GF PD+FT+ TLL + + ++ ++ +MK+
Sbjct: 520 -EAIKLHGDM-TRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKT 565
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66
+ R +K + N ++ A +++E + +L+ ++ +GL+PD +SY +I K K
Sbjct: 528 MTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKD 587
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + +L D G K P++F Y L+ G+ D+ ++ V MKS
Sbjct: 588 IRKAKEYLTELMDRGLK-------PNVFIYNALIGGYGRNGDISGAIDAVETMKS 635
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
+E+ + LN A+I+A +A ++D +++L + GL+P ++YN+L+ A K
Sbjct: 209 DEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCK 268
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ +++ E + G + GG P + T+ L+ G + + ++ EM+
Sbjct: 269 SGRVE------EAFRLKG-RMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEME 318
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+++N + + S+ +DEA ++ E ++KGL P+ +++ LI K+ ++D+ +
Sbjct: 209 NTVLINGLCKESK----MDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIY 264
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ G + PD+ TY TL+ G DL+ +++ EM S L D+ T+T
Sbjct: 265 KQMLRQG-------YSPDLITYNTLIYGLCRKGDLKQARDLIVEM-SMKGLKPDKITYTT 316
Query: 135 MVDALLYSGSIKV 147
++D G ++
Sbjct: 317 LIDGSCKEGDLET 329
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 21/205 (10%)
Query: 3 EENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILI 58
E NE+ N + N + +I+ ++ R+D A +I + + +G PD ++YN LI
Sbjct: 224 EANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLI 283
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ L +Q +D + S G PD TY TL+ G DL++ E+
Sbjct: 284 YGLCRKGDL-------KQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKR 336
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
M ++ LD +TA++ L G + E + R + GL P+ Y
Sbjct: 337 MIE-ESIRLDDVAYTALISGLCQEGR---------AVDAEKMLREMLSVGLKPENGTYTM 386
Query: 179 MMHELAARVDYDIVKSPYRRMWPDS 203
+++ + D + M D
Sbjct: 387 IINGFCKQGDVKTASKLLKEMQRDG 411
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +S+N LI+ I+ LD + + G HPD++
Sbjct: 155 AQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAM-------HASGVHPDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
T L+ G + E+ EM L+ + TFT ++D SG + + AL
Sbjct: 208 TNTVLINGLCKESKMDEANELFNEMLD-KGLVPNGVTFTTLIDGHCKSGRVDL----ALE 262
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD-----IVKSPYRRMWPD 202
I+ +++++ G P Y ++++ L + D IV+ + + PD
Sbjct: 263 IYKQMLRQ-----GYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPD 310
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N NA+I + + EA ++L++ V G+E D ++YNI+I C K K+D +
Sbjct: 455 VNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAI-- 512
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
QL+D+ K GF PD+FT+ L + + ++ +L ++ +MKS
Sbjct: 513 --QLRDDMIK---RGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKS 555
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 22/171 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+L+ I N +I+ +A ++DEA Q+ + +++G +PD ++NI + K++ +
Sbjct: 489 ELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILH 548
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRST 131
+Q+K G K PDI TY T++ G+ AKD+ E + E MK+ L +
Sbjct: 549 LLDQMKSEGLK-------PDIVTYGTIIDGYCKAKDMHKANEYLTELMKN--GLRPNAVI 599
Query: 132 FTAMVDALLYSGSIK-VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ A++ +G+I +G+ + G+ P P Y S+M+
Sbjct: 600 YNALIGGYGRNGNISDAIGILDTMKYN----------GIQPTPVTYNSLMY 640
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT-KKLDVTM 71
+L I +I+ + +IDEA + + +G+ P+ ++Y L+ A K+ K + +
Sbjct: 664 ELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASK 723
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F+E + S G PD +Y TL+ GF L ++E EM S L D +
Sbjct: 724 LFDEMV--------SLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQV-LKQDGCS 774
Query: 132 FTAMVDAL 139
+ A VD +
Sbjct: 775 YNAFVDGI 782
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
A+I+A A ID A+ +L + + G++P ++YN+L+ A K+ +++ ++ +
Sbjct: 215 TAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVE 274
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
G P I T+ L+ G + + ++ EM+
Sbjct: 275 -------GRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQG 309
>gi|298707694|emb|CBJ26011.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1173
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTK 65
++ R+ + + I N+ I A + + A Q+LE + +G+ PD ++YNI + AC+K
Sbjct: 396 MLRRKGLQPDVISFNSAIGACASGGKWEVALQLLELMPSEGVTPDLMTYNIALDACVKGG 455
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ ++ M ++L +G + PD++TY TL+ F A L LE++ E K+ L
Sbjct: 456 QWEMAMSLFDELVASGDE----SLRPDLYTYNTLMTVFSDAGMLPRALELLEEAKA-KRL 510
Query: 126 ILDRSTFTAMVDA 138
D T++ ++ A
Sbjct: 511 RPDVVTYSTLIRA 523
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 20/174 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
KLN +V +++I+ + RIDEAY I+E + +KGL P+ ++N L+ A +K ++++ +
Sbjct: 681 KLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALI 740
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ +KD KC P+ TY+ L+ G + EM+ L + T+
Sbjct: 741 CFQSMKD--LKCP-----PNQITYSILINGLCRVRKFNKAFVFWQEMQK-LGLKPNTITY 792
Query: 133 TAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
T M+ L +G+I + GL++ R +N G+ P Y +M+ L++
Sbjct: 793 TTMISGLAKAGNILEASGLFS---------RFKANGGI-PDSASYNAMIEGLSS 836
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T NAVI+ ++ ++++AYQ+LE ++ KG P ++Y +I K +LD
Sbjct: 612 LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYML 671
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+ K NG K ++ Y++L+ GF + I+ E+ L + T+
Sbjct: 672 FEEAKSNGIKL-------NVVVYSSLIDGFGKVGRIDEAYLIMEELMQ-KGLTPNVYTWN 723
Query: 134 AMVDALLYSGSI 145
++DAL+ + I
Sbjct: 724 CLLDALVKAEEI 735
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N ++ + +R++EA +I E +++ P+ +YNILI + KL+ +
Sbjct: 369 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAAL---- 424
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+++D+ ++ G P++ T ++ A+ L+ I M K C + TF+
Sbjct: 425 EIRDDMER---AGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVC---TPNAVTFS 478
Query: 134 AMVDALLYSGSI 145
+++D L G +
Sbjct: 479 SLIDGLGKCGRV 490
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ ++ N I+ +A ++D +++ ++ GL PD ++Y +I K +LD +
Sbjct: 264 DIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELF 323
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
EQL+ N + P + Y T++MG+ A
Sbjct: 324 EQLEQNRKV-------PCAYAYNTMIMGYGSA 348
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 20/174 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
KLN +V +++I+ + RIDEAY I+E + +KGL P+ ++N L+ A +K ++++ +
Sbjct: 436 KLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALI 495
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ +KD KC P+ TY+ L+ G + EM+ L + T+
Sbjct: 496 CFQSMKD--LKCP-----PNQITYSILINGLCRVRKFNKAFVFWQEMQK-LGLKPNTITY 547
Query: 133 TAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
T M+ L +G+I + GL++ R +N G+ P Y +M+ L++
Sbjct: 548 TTMISGLAKAGNILEASGLFS---------RFKANGGI-PDSASYNAMIEGLSS 591
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T NAVI+ ++ ++++AYQ+LE ++ KG P ++Y +I K +LD
Sbjct: 367 LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYML 426
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+ K NG K ++ Y++L+ GF + I+ E+ L + T+
Sbjct: 427 FEEAKSNGIKL-------NVVVYSSLIDGFGKVGRIDEAYLIMEELMQ-KGLTPNVYTWN 478
Query: 134 AMVDALLYSGSI 145
++DAL+ + I
Sbjct: 479 CLLDALVKAEEI 490
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N ++ + +R++EA +I E +++ P+ +YNILI + KL+ +
Sbjct: 124 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAAL---- 179
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+++D+ ++ G P++ T ++ A+ L+ I M K C + TF+
Sbjct: 180 EIRDDMER---AGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVC---TPNAVTFS 233
Query: 134 AMVDALLYSGSI 145
+++D L G +
Sbjct: 234 SLIDGLGKCGRV 245
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + +R+ EA +++ +++ GL P+ +SYN LI LD
Sbjct: 290 NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLF 349
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K +GQ P + TY L+ GF AK+ + ++V EM++ L + T+T
Sbjct: 350 NQMKSSGQS-------PSLATYNILIAGFSEAKNSAGVTDMVREMEA-RGLSPSKVTYTI 401
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++DAL+ S +I+ A I+ + K GL ++Y ++H L D
Sbjct: 402 LMDALVRSDNIE----KAFQIYSSMEK-----AGLVADIYIYGVLIHGLCVVGD 446
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I A RID+AY IL+++E +G PD ++Y +LI A KLD
Sbjct: 261 NIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELY 320
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + K PD+ TY TL+ F + DL+++ EM++ D T+T
Sbjct: 321 TKMRASSHK-------PDLVTYITLMSKFGNYGDLETVKRFWSEMEA-DGYAPDVVTYTI 372
Query: 135 MVDALLYSGSI 145
+V+AL SG +
Sbjct: 373 LVEALCKSGKV 383
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 23 VIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
++E R+D+A E ++ GL+PD++SYN++I+ K+++L+ + ++K+
Sbjct: 969 LVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNR- 1027
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHA 106
G P+++TY L++ F +A
Sbjct: 1028 ------GISPELYTYNALILHFGNA 1046
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +++A +++RIDE +++ E + +G +P+ +++NI+ISA +K+ ++ +
Sbjct: 822 NIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ SG F P TY L+ G A + ++I EM
Sbjct: 882 YEI-------ISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEM 919
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
IFEE + K N + N +I +A ++ A + + +++G+ PD SY IL+
Sbjct: 915 IFEE---MPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVE 971
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
T ++D + + E+LK G PD +Y ++ G ++ L+ L + EM
Sbjct: 972 CLFMTGRVDDAVHYFEELKLT-------GLDPDTVSYNLMINGLGKSRRLEEALSLFSEM 1024
Query: 120 KS 121
K+
Sbjct: 1025 KN 1026
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 1 IFEENEIVNREH---WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
I E +I N H +++ N +++ +A +ID+A ++L E + +G EPD + N
Sbjct: 488 IREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNS 547
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
LI K ++D +LKD P + TY L+ G L L++
Sbjct: 548 LIDTLYKAGRVDEAWQMFGRLKDL-------KLAPTVVTYNILITGLGKEGKLLKALDLF 600
Query: 117 FEMK-SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
MK S C + TF A++D L + ++ + AL +F + CS
Sbjct: 601 GSMKESGCP--PNTVTFNALLDCLCKNDAVDL----ALKMFCRMTIMNCS 644
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 37 YQILESVEK--------GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
Y LE+V++ G PD ++Y IL+ A K+ K+D + ++ G
Sbjct: 345 YGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRG------- 397
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
P++ TY TL+ G + + L LE+ M+S
Sbjct: 398 IVPNLHTYNTLISGLLNLRRLDEALELFNNMES 430
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ A ++LE + K G P+SLSYN L+ A K KK+D M F
Sbjct: 299 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFL 358
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+ + S G +PDI +Y TLL + ++ +E++ ++ K C +++ ++
Sbjct: 359 DLM-------VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI---SY 408
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++D L +G K AL + E+V + GL P Y ++ L
Sbjct: 409 NTVIDGLTKAGKTK----EALELLNEMVSK-----GLQPDIITYSTIAAGL 450
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ A + +++D+A L+ V +G PD +SYN L++A ++ ++DV +
Sbjct: 334 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 393
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QLKD G C+ P + +Y T++ G A + LE++ EM S L D T++
Sbjct: 394 HQLKDKG--CA-----PVLISYNTVIDGLTKAGKTKEALELLNEMVS-KGLQPDIITYST 445
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+ L I+ A+ FG++ + G+ P LY +++ L R
Sbjct: 446 IAAGLCREDRIE----DAIRAFGKV-----QDMGIRPNTVLYNAIILGLCKR 488
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + EA ++L E V KGL+PD ++Y+ + + + +++ + +
Sbjct: 406 ISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGK 465
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
++D G P+ Y +++G ++ S +++ M C + + ST+T
Sbjct: 466 VQDMG-------IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC---MPNESTYTI 515
Query: 135 MVDALLYSGSIK 146
+++ L Y G IK
Sbjct: 516 LIEGLAYEGLIK 527
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 31/232 (13%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R + + ++EA+ + +A ++L+ + +KG PD ++YN++++ + ++D
Sbjct: 188 RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 247
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+ F + L S G P+ +Y +L G A+ + E++ EM K C +
Sbjct: 248 DAIEFLKNL-------PSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 300
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP--HLYVSMMHELA 184
+ TF ++ L G ++ AL + +I K CS L P H +
Sbjct: 301 V---TFNMLISFLCRKGLVEP----ALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDK 353
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
A D++ S R +PD + L+ A G+VD+A++ L
Sbjct: 354 AMAFLDLMVS--RGCYPDIVSY----------NTLLTALCRSGEVDVAVELL 393
>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
Length = 634
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +V N +IE QR EA ++ E ++ KG P+ +Y +LI K K+D+ M
Sbjct: 365 DVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECF 424
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
E++++ KC PD+ TY LL+G+ +AK + + ++ EM K C D T+
Sbjct: 425 EEMQE--AKC-----QPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPP---DARTY 474
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
A++ L + + + A I+ +++K+ GL P H Y MM
Sbjct: 475 NALIKLL----TNRNMPDDAARIYKKMIKK-----GLEPTIHTYNMMM 513
>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
Length = 657
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 22/170 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + +V N +IE QR EA ++ E ++ KG P+ +Y +LI K K+D+ M
Sbjct: 365 KPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAME 424
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRS 130
E++++ +C PD+ TY LL+G+ +AK + + ++ EM K C D
Sbjct: 425 CFEEMQE--ARC-----QPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGC---PPDAR 474
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
T+ A++ L + + + A I+ +++K+ GL P H Y MM
Sbjct: 475 TYNALIKLL----TNRKMPDDAARIYKKMIKK-----GLEPTIHTYNMMM 515
>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
Length = 634
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +V N +IE QR EA ++ E ++ KG P+ +Y +LI K K+D+ M
Sbjct: 365 DVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECF 424
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
E++++ KC PD+ TY LL+G+ +AK + + ++ EM K C D T+
Sbjct: 425 EEMQE--AKC-----QPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPP---DARTY 474
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
A++ L + + + A I+ +++K+ GL P H Y MM
Sbjct: 475 NALIKLL----TNRNMPDDAARIYKKMIKK-----GLEPTIHTYNMMM 513
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+F+E + R K ++I A+++A +A R+D+A ++L+ + E+G++P ++YN LI+
Sbjct: 206 LFQE---MKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIA 262
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L +++K NG K PD+ TY+ L+ G A L +++ +M
Sbjct: 263 GFGKVGDLVEAYNLLDEMKRNGCK-------PDVVTYSCLITGLIKASQLDEACQVLKKM 315
Query: 120 -KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
K C D T+ +++ L +G + G +F + + C NP + L +
Sbjct: 316 EKEGCP--PDTITYNTLINGLGKAGLLNDAGR----LFDRMKSKGC-NPDVVTYSTLITA 368
Query: 179 MMHELAARVDYDIV 192
+ AARV+ V
Sbjct: 369 LGK--AARVESACV 380
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ R K + + + +I +A ++DEA Q+L+ +EK G PD+++YN LI+ K
Sbjct: 280 MKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGL 339
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
L+ +++K S G +PD+ TY+TL+ A ++S + EM+S +
Sbjct: 340 LNDAGRLFDRMK-------SKGCNPDVVTYSTLITALGKAARVESACVLFEEMES-VGIQ 391
Query: 127 LDRSTFTAMVDALLYSGSI 145
D T+ +++ L +G +
Sbjct: 392 PDLFTYCSIITVLGKAGQV 410
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I +A R+ EA+ + E E+G PD+ +YN LI K + M E+++
Sbjct: 118 NCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMER 177
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G C PD+ TY++L+ G + ++ EMK D TFTA++DAL
Sbjct: 178 HG--CP-----PDVMTYSSLITGLGKDGETVKAFKLFQEMKR-RGRKPDSITFTALMDAL 229
Query: 140 LYSGSI 145
+G +
Sbjct: 230 GKAGRV 235
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + NA+I + + EAY +L+ +++ G +PD ++Y+ LI+ IK +LD
Sbjct: 251 KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQ 310
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRST 131
++++ G C PD TY TL+ G A L + MKS CN D T
Sbjct: 311 VLKKMEKEG--CP-----PDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCN--PDVVT 361
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
++ ++ AL + ++ + C+ E ++ V G+ P Y S++ L A +VD
Sbjct: 362 YSTLITALGKAARVE-----SACVLFEEMESV----GIQPDLFTYCSIITVLGKAGQVD 411
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+FEE E V + + ++I +A ++D+A ++ + KGL PD ++YN ++
Sbjct: 381 LFEEMESVGIQP---DLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLN 437
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + + E +K++ G PD+ TY LL+G K E+
Sbjct: 438 SLGRGGRFKEARKIFEDMKES-------GLLPDVATYDALLLGLSKTK----------EV 480
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
C L+ + D+L + ++++ + + + ++ GLWP Y ++
Sbjct: 481 DDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNAL 540
Query: 180 MHELA 184
+ LA
Sbjct: 541 IDALA 545
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I+A +A R+ EA+ LE + E+G +PD +SY+ LISA +T ++D E++
Sbjct: 538 NALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSK 597
Query: 80 NGQKCS 85
G K S
Sbjct: 598 RGLKLS 603
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 33 IDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+DEA+++L+ + KGL P + SYN LI A K ++ E LK+ G K P
Sbjct: 515 VDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGK-------P 567
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEM 119
DI +Y++L+ + + E++ EM
Sbjct: 568 DIVSYSSLISALGQTGQIDTAFELLEEM 595
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 46/220 (20%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+FEE + W + + + +I + A + + A +++ ++ KG +P+ +YN L+
Sbjct: 31 LFEE---LKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVD 87
Query: 60 ACIKTKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHP 91
K + D + +++DNG + G P
Sbjct: 88 CLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVP 147
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
D FTY +L+ G Q +E++ EM + C D T+++++ L G +
Sbjct: 148 DTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCP--PDVMTYSSLITGLGKDGET----V 201
Query: 151 YALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
A +F E+ +R G P + ++M L A RVD
Sbjct: 202 KAFKLFQEMKRR-----GRKPDSITFTALMDALGKAGRVD 236
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + +R+ EA +++ +++ GL P+ +SYN LI LD
Sbjct: 303 NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLF 362
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K +GQ P + TY L+ GF AK+ + ++V EM++ L + T+T
Sbjct: 363 NQMKSSGQS-------PSLATYNILIAGFSEAKNSAGVTDMVREMEA-RGLSPSKVTYTI 414
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++DAL+ S +I+ A I+ + K GL ++Y ++H L D
Sbjct: 415 LMDALVRSDNIE----KAFQIYSSMEK-----AGLVADIYIYGVLIHGLCVVGD 459
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFN 74
N +V +A+I +A+++D A ++L ++K PD+++YNILI K+ ++ F
Sbjct: 433 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 492
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G K PD++TY L+ G A + + ++ +M S R +++
Sbjct: 493 DEMLEAGCK-------PDVYTYNILISGLCKAGNTDAACGVLDDMSS------SRFVYSS 539
Query: 135 MVDALLYSGSIK 146
+VD L SG ++
Sbjct: 540 LVDGLCKSGKLE 551
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 31 QRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
++I EA ++E + G P +YN L++ K +L+ + ++ DNG C+
Sbjct: 273 KKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG--CT---- 326
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
PD+ TY +L+ G K ++ EM S L LD +TA++ LL +G I
Sbjct: 327 -PDVVTYTSLIDGLGKEKRSFEAYKLFKEMAS-RGLALDTVCYTALIRGLLQTGKI 380
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
+FEE + +LN IV +++I+ + RIDEAY ILE ++KGL P+ ++N L+
Sbjct: 151 LFEE---AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMD 207
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K ++++ + + +K+ KCS P+ +TY+ L+ G + EM
Sbjct: 208 ALVKAEEINEALICFQSMKE--MKCS-----PNTYTYSILINGLCRVQKYNKAFVFWQEM 260
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
+ L+ + T+T M+ L G+I
Sbjct: 261 QK-QGLVPNVVTYTTMISGLAKVGNI 285
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
+ L+ NAV++ ++ ++D+AY+ LE ++ K + P +Y +I K +LD
Sbjct: 90 FALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAY 149
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E+ K S G ++ Y++L+ GF + I+ EM L + T
Sbjct: 150 MLFEEAK-------SKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMK-KGLAPNVYT 201
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
+ +++DAL+ + I AL F + + CS P + Y +++ L Y+
Sbjct: 202 WNSLMDALVKAEEIN----EALICFQSMKEMKCS-----PNTYTYSILINGLCRVQKYN 251
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
+E E + +H ++I+ + R+DEAY + E + KG+E + + Y+ LI
Sbjct: 114 YEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDG 173
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K ++D E++ G P+++T+ +L+ A+++ L MK
Sbjct: 174 FGKVGRIDEAYLILEEMMKK-------GLAPNVYTWNSLMDALVKAEEINEALICFQSMK 226
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+ +T+T ++L +G +V +F + +++ GL P Y +M+
Sbjct: 227 E---MKCSPNTYTY---SILINGLCRVQKYNKAFVFWQEMQK----QGLVPNVVTYTTMI 276
Query: 181 HELA 184
LA
Sbjct: 277 SGLA 280
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ A ++LE + K G P+SLSYN L+ A K KK+D M F
Sbjct: 297 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 356
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+ + S G +PDI +Y TLL + ++ +E++ ++ K C +++ ++
Sbjct: 357 DLM-------VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI---SY 406
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++D L +G K AL + E+V + GL P Y ++ L
Sbjct: 407 NTVIDGLTKAGKTK----EALELLNEMVSK-----GLQPDIITYSTIAAGL 448
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ A + +++D+A L+ V +G PD +SYN L++A ++ ++DV +
Sbjct: 332 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 391
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QLKD G C+ P + +Y T++ G A + LE++ EM S L D T++
Sbjct: 392 HQLKDKG--CA-----PVLISYNTVIDGLTKAGKTKEALELLNEMVS-KGLQPDIITYST 443
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+ L I+ A+ FG++ + G+ P LY +++ L R
Sbjct: 444 IAAGLCREDRIE----DAIRAFGKV-----QDMGIRPNTVLYNAIILGLCKR 486
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + EA ++L E V KGL+PD ++Y+ + + + +++ + +
Sbjct: 404 ISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGK 463
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
++D G P+ Y +++G ++ S +++ M C + + ST+T
Sbjct: 464 VQDMG-------IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC---MPNESTYTI 513
Query: 135 MVDALLYSGSIK 146
+++ L Y G IK
Sbjct: 514 LIEGLAYEGLIK 525
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 31/232 (13%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R + + ++EA+ + +A ++L+ + +KG PD ++YN++++ + ++D
Sbjct: 186 RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 245
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+ F + L S G P+ +Y +L G A+ + E++ EM K C +
Sbjct: 246 DAIEFLKNL-------PSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 298
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP--HLYVSMMHELA 184
+ TF ++ L G ++ AL + +I K C+ L P H +
Sbjct: 299 V---TFNMLISFLCRKGLVEP----ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDK 351
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
A D++ S R +PD + L+ A G+VD+A++ L
Sbjct: 352 AMAFLDLMVS--RGCYPDIVSY----------NTLLTALCRSGEVDVAVELL 391
>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
Length = 1070
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 82/158 (51%), Gaps = 17/158 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
++ +++ + + N +I R++ ++DEA +I+E +EKGL P ++YN++I C KT +
Sbjct: 606 ISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGR 665
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
++ + + +++ ++ P + TY +L+ GF A +++ EM K C
Sbjct: 666 IEKAISYLDKMVYEEKQ-------PTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAP 718
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+ +TA ++ L G I+ AL F E+V +
Sbjct: 719 ---NNIAYTAFINGLRKCGRIET----ALTYFEEMVTK 749
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 51/187 (27%)
Query: 9 NREHWKLNTIV--MNAVIEASREAQRIDEAYQILES--------------------VEKG 46
N E+ K ++V N V+E ++ AYQ+L S + +
Sbjct: 376 NAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIRED 435
Query: 47 LEPDSLSYNILISACIKTKKLDVTMP----------------FNEQLKD--NGQKCSSG- 87
+P+S S+NI++ K KKLD+ + FN+ + + N + G
Sbjct: 436 AKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGY 495
Query: 88 ---------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
G P FTY +L G KD ++ L+++ EM++ + ++ T MV
Sbjct: 496 GIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNC-TEMVQQ 554
Query: 139 LLYSGSI 145
L +SG +
Sbjct: 555 LCFSGRV 561
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V+ ++ A + ++D A ++L S+E G+ + ++L+ K ++D M
Sbjct: 247 VLTTLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAM------ 300
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
D K S GF D+ Y+ L+ G KD+ +++ EMKS + D +++
Sbjct: 301 -DMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKS-SGVAPDVRLLKKVIE 358
Query: 138 ALLYSGSIKVVGLY 151
A G V+G +
Sbjct: 359 AFCREGDFAVIGPF 372
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 39/214 (18%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +DEA+++ E +++GL P+ +++ LI K KLD+ M +
Sbjct: 210 SVLINGLCKESK----MDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S GF PD TY TL+ G DL ++ EM S L D+ T+T +
Sbjct: 266 QM-------LSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEM-SMKGLKPDKITYTTL 317
Query: 136 VDALLYSGSIKVVGLY---------------------ALCIFGEIVK-----RVCSNPGL 169
+D G ++ Y LC G V R + GL
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGL 377
Query: 170 WPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203
P Y +MHE D + + M D
Sbjct: 378 KPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDG 411
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + + + K GL P +S+N L++ IK LD + + G PD++
Sbjct: 155 AQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAM-------HASGVQPDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + ++ EM L+ + TFT ++D +G + +
Sbjct: 208 TYSVLINGLCKESKMDEAHKLFDEMLD-RGLVPNGVTFTTLIDGHCKNGKLDLA------ 260
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S G P Y ++++ L + D
Sbjct: 261 --MEIYKQMLSQ-GFSPDXITYNTLIYGLCKKGD 291
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 22/172 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ A ++LE + K G P+SLSYN L+ A K KK+D M F
Sbjct: 96 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 155
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+ + S G +PDI +Y TLL + ++ +E++ ++ K C +++ ++
Sbjct: 156 DLM-------VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI---SY 205
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++D L +G K AL + E+V + GL P Y ++ L
Sbjct: 206 NTVIDGLTKAGKTK----EALELLNEMVSK-----GLQPDIITYSTIAAGLC 248
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ A + +++D+A L+ V +G PD +SYN L++A ++ ++DV +
Sbjct: 131 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 190
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QLKD G C+ P + +Y T++ G A + LE++ EM S L D T++
Sbjct: 191 HQLKDKG--CA-----PVLISYNTVIDGLTKAGKTKEALELLNEMVS-KGLQPDIITYST 242
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+ L I+ A+ FG++ + G+ P LY +++ L R
Sbjct: 243 IAAGLCREDRIE----DAIRAFGKV-----QDMGIRPNTVLYNAIILGLCKR 285
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + EA ++L E V KGL+PD ++Y+ + + + +++ + +
Sbjct: 203 ISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGK 262
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
++D G P+ Y +++G ++ S +++ M C + + ST+T
Sbjct: 263 VQDMG-------IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC---MPNESTYTI 312
Query: 135 MVDALLYSGSIK 146
+++ L Y G IK
Sbjct: 313 LIEGLAYEGLIK 324
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 31/207 (14%)
Query: 35 EAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
+A ++L+ + +KG PD ++YN++++ + ++D + F + L S G P+
Sbjct: 10 QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNL-------PSYGCEPNT 62
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
+Y +L G A+ + E++ EM K C ++ TF ++ L G ++
Sbjct: 63 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVV---TFNMLISFLCRKGLVEP---- 115
Query: 152 ALCIFGEIVKRVCSNPGLWPKP--HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISP 209
AL + +I K C+ L P H + A D++ S R +PD
Sbjct: 116 ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS--RGCYPDIV----- 168
Query: 210 EVQEEAGHLLMEAALNDGQVDLALDKL 236
+ + L+ A G+VD+A++ L
Sbjct: 169 -----SYNTLLTALCRSGEVDVAVELL 190
>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
Length = 975
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 82/158 (51%), Gaps = 17/158 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
++ +++ + + N +I R++ ++DEA +I+E +EKGL P ++YN++I C KT +
Sbjct: 606 ISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGR 665
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
++ + + +++ ++ P + TY +L+ GF A +++ EM K C
Sbjct: 666 IEKAISYLDKMVYEEKQ-------PTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAP 718
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+ +TA ++ L G I+ AL F E+V +
Sbjct: 719 ---NNIAYTAFINGLRKCGRIET----ALTYFEEMVTK 749
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V+ ++ A + ++D A ++L S+E G+ + ++L+ K ++D M
Sbjct: 247 VLTTLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAM------ 300
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
D K S GF D+ Y+ L+ G KD+ +++ EMKS + D +++
Sbjct: 301 -DMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKS-SGVAPDVRLLKKVIE 358
Query: 138 ALLYSGSIKVVGLY 151
A G V+G +
Sbjct: 359 AFCREGDFAVIGPF 372
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 51/187 (27%)
Query: 9 NREHWKLNTIV--MNAVIEASREAQRIDEAYQILES--------------------VEKG 46
N E+ K ++V N V+E ++ AYQ+L S + +
Sbjct: 376 NAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIRED 435
Query: 47 LEPDSLSYNILISACIKTKKLDVTMP----------------FNEQLKD--NGQKCSSG- 87
+P+S S+NI++ K KKLD+ + FN+ + + N + G
Sbjct: 436 AKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGY 495
Query: 88 ---------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
G P FTY +L G K ++ L+++ EM++ + ++ T MV
Sbjct: 496 GIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNC-TEMVQQ 554
Query: 139 LLYSGSI 145
L +SG +
Sbjct: 555 LCFSGRV 561
>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
Length = 975
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 82/158 (51%), Gaps = 17/158 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
++ +++ + + N +I R++ ++DEA +I+E +EKGL P ++YN++I C KT +
Sbjct: 606 ISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGR 665
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
++ + + +++ ++ P + TY +L+ GF A +++ EM K C
Sbjct: 666 IEKAISYLDKMVYEEKQ-------PTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAP 718
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+ +TA ++ L G I+ AL F E+V +
Sbjct: 719 ---NNIAYTAFINGLRKCGRIET----ALTYFEEMVTK 749
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 51/187 (27%)
Query: 9 NREHWKLNTIV--MNAVIEASREAQRIDEAYQILES--------------------VEKG 46
N E+ K ++V N V+E ++ AYQ+L S + +
Sbjct: 376 NAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIRED 435
Query: 47 LEPDSLSYNILISACIKTKKLDVTMP----------------FNEQLKD--NGQKCSSG- 87
+P+S S+NI++ K KKLD+ + FN+ + + N + G
Sbjct: 436 AKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGY 495
Query: 88 ---------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
G P FTY +L G KD ++ L+++ EM++ + ++ T MV
Sbjct: 496 GIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNC-TEMVQQ 554
Query: 139 LLYSGSI 145
L +SG +
Sbjct: 555 LCFSGRV 561
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V+ ++ A + ++D A ++L S+E G+ + ++L+ K ++D M
Sbjct: 247 VLTTLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAM------ 300
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
D K S GF D+ Y+ L+ G KD+ +++ EMKS + D +++
Sbjct: 301 -DMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKS-SGVAPDVRLLKKVIE 358
Query: 138 ALLYSGSIKVVGLY 151
A G V+G +
Sbjct: 359 AFCREGDFAVIGPF 372
>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 847
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
E W N I + V+ R +++EA ++ E + KG P+ + N+L+ + + K
Sbjct: 556 EWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGK--- 612
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
N+ LK+ C + G ++ + T++ GF DL++ L ++ +M CN D
Sbjct: 613 PREANQLLKE----CMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM-YLCNKHPDT 667
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
T+TA++DAL + I+ + + + GL P P Y S++H+
Sbjct: 668 VTYTALIDALAKTDRIEEATELTMKMLRQ---------GLVPSPVTYRSVIHQ 711
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ ++D+A ++++ + KG PD +SY ++ + K+L+
Sbjct: 350 NVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELI 409
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++++ + + PD TY +L+ LEI+ E + +D+ ++A
Sbjct: 410 KKMQTDSK------LLPDHVTYNSLIQMLSKHGHGDEALEILQEAEK-LRFKVDKVEYSA 462
Query: 135 MVDALLYSGSIK 146
+V A G I+
Sbjct: 463 IVHAYCKEGKIQ 474
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+K++ + +A++ A + +I +A +++ E KG +PD ++Y ++ + KLD
Sbjct: 453 FKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAK 512
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAKDLQS 111
+Q+ + K P+ TY T L G R+ K L++
Sbjct: 513 KMMQQMYKHHCK-------PNAVTYTTFLNGLCRNGKSLEA 546
>gi|302769109|ref|XP_002967974.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
gi|300164712|gb|EFJ31321.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
Length = 376
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
IV N +I+ +A +++EA+++ + V+ G P +YN LI+ K D F +
Sbjct: 99 AIVYNQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLINGLCLQGKTDEARDFLQ 158
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ D+G ++PD+ TY L+ R + ++ +++ EM S + DR+++ +
Sbjct: 159 EMADSG-------YNPDVVTYTVLINSLRRDGNFKAAVDVFDEMVSKGGCVPDRASYMPL 211
Query: 136 VDALLYSGSIKVV 148
+ L G +++V
Sbjct: 212 LIGLCKEGCVQLV 224
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
V RE + N+ + A + + I EA+Q+ E ++K GL PD+ +Y ILI +
Sbjct: 261 VFRELASPELVHFNSFMSALCQRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGR 320
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
D + + + N K PD TY L G A
Sbjct: 321 TDQALSLKDTMIQNNCK-------PDSVTYGILRAGLLKA 353
>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
Length = 637
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 23/179 (12%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
NE++ + K + +V N +IE QR EA ++ E ++ KG P+ +Y +LI K
Sbjct: 353 NEMLEKG-MKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTMLICNHCK 411
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KS 121
K+D+ M E++++ +C PD+ TY LL+G+ +AK + + ++ EM K
Sbjct: 412 RGKMDMAMECFEEMQE--ARC-----QPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKG 464
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
C D T+ A++ L + + + A I+ +++K+ GL P H Y MM
Sbjct: 465 C---PPDARTYNALIKLL----TNRKMPDDAARIYKKMIKK-----GLDPTIHTYNMMM 511
>gi|302761046|ref|XP_002963945.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
gi|300167674|gb|EFJ34278.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
Length = 376
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
IV N +I+ +A +++EA+++ + V+ G P +YN LI+ K D F ++
Sbjct: 100 IVYNQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLINGLCLQGKTDEARDFLQE 159
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ D+G ++PD+ TY L+ R + ++ +++ EM S + DR+++ ++
Sbjct: 160 MADSG-------YNPDVVTYTVLINSLRRDGNFRAAVDVFDEMVSKGGCVPDRASYMPLL 212
Query: 137 DALLYSGSIKVV 148
L G +++V
Sbjct: 213 IGLCKEGCVQLV 224
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
V RE + N+ + A + + I EA+Q+ E ++K GL PD+ +Y ILI +
Sbjct: 261 VFRELASPELVHFNSFMSALCQRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGR 320
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
D + + + N K PD TY L G A
Sbjct: 321 TDQALSLKDTMIQNNCK-------PDSVTYGILRAGLLKA 353
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ A ++LE + K G P+SLSYN L+ A K KK+D M F
Sbjct: 171 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 230
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+ + S G +PDI +Y TLL + ++ +E++ ++ K C +++ ++
Sbjct: 231 DLM-------VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI---SY 280
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
++D L +G K AL + E+V + GL P
Sbjct: 281 NTVIDGLTKAGKTK----EALELLNEMVSK-----GLQP 310
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ A + +++D+A L+ V +G PD +SYN L++A ++ ++DV +
Sbjct: 206 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 265
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QLKD G C+ P + +Y T++ G A + LE++ EM S L D T++
Sbjct: 266 HQLKDKG--CA-----PVLISYNTVIDGLTKAGKTKEALELLNEMVS-KGLQPDIITYST 317
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+ L I+ A+ FG++ + G+ P LY +++ L R
Sbjct: 318 IAAGLCREDRIE----DAIRAFGKV-----QDMGIRPNTVLYNAIILGLCKR 360
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + EA ++L E V KGL+PD ++Y+ + + + +++ + +
Sbjct: 278 ISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGK 337
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
++D G P+ Y +++G ++ S +++ M C + + ST+T
Sbjct: 338 VQDMG-------IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC---MPNESTYTI 387
Query: 135 MVDALLYSGSIK 146
+++ L Y G IK
Sbjct: 388 LIEGLAYEGLIK 399
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 31/232 (13%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R + + ++EA+ + +A ++L+ + +KG PD ++YN++++ + ++D
Sbjct: 60 RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 119
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+ F + L S G P+ +Y +L G A+ + E++ EM K C +
Sbjct: 120 DAIEFLKNL-------PSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 172
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP--HLYVSMMHELA 184
+ TF ++ L G ++ AL + +I K C+ L P H +
Sbjct: 173 V---TFNMLISFLCRKGLVEP----ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDK 225
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
A D++ S R +PD + L+ A G+VD+A++ L
Sbjct: 226 AMAFLDLMVS--RGCYPDIVSY----------NTLLTALCRSGEVDVAVELL 265
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 21/197 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+A + RIDEA+ +L+S+ KG++P+ +SYN++I+ + +
Sbjct: 44 NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAW--- 100
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L++ G K GF PD TY TLL G+ + L I EM + T+TA
Sbjct: 101 EILEEMGYK----GFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR-NGVSPSVVTYTA 155
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
+++++ + ++ A+ F ++ R GL P Y +++ + + ++
Sbjct: 156 LINSMCKARNLN----RAMEFFDQMRIR-----GLRPNERTYTTLIDGFSRQ---GLLNE 203
Query: 195 PYRRMWPDSTGTISPEV 211
YR + + SP V
Sbjct: 204 AYRILNEMTESGFSPSV 220
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA I +R++EA ++ E VEKGL PD +SY+ +IS + +LD
Sbjct: 219 SVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 278
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G PD TY++L+ G + L ++ EM L D T+T
Sbjct: 279 QEMVEK-------GVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLD-MGLPPDEFTYTT 330
Query: 135 MVDALLYSGSI 145
+++A G +
Sbjct: 331 LINAYCVEGDL 341
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + +I +D A+Q+ E VEKG+ PD+++Y+ LI + ++L +
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 313
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ D G PD FTY TL+ + DL L + EM + D T++
Sbjct: 314 QEMLDMG-------LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH-KGFLPDAVTYSV 365
Query: 135 MVDAL 139
+++ L
Sbjct: 366 LINGL 370
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 33 IDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
++EAY+IL E E G P ++YN I ++++ + +++ + G P
Sbjct: 201 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK-------GLAP 253
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
D+ +Y+T++ GF +L ++ EM + D T+++++ L
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQEMVE-KGVSPDAVTYSSLIQGL 300
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +++I+ E +R+ EA + E ++ GL PD +Y LI+A L+ + +
Sbjct: 289 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 348
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF------RHAKDLQSLLEIVFE 118
+++ G F PD TY+ L+ G R AK L L ++++E
Sbjct: 349 DEMIHKG-------FLPDAVTYSVLINGLNKQARTREAKRL--LFKLIYE 389
>gi|387219047|gb|AFJ69232.1| hypothetical protein NGATSA_2004410 [Nannochloropsis gaditana
CCMP526]
gi|422293010|gb|EKU20311.1| hypothetical protein NGA_2004410 [Nannochloropsis gaditana CCMP526]
gi|422293947|gb|EKU21247.1| hypothetical protein NGA_2004420 [Nannochloropsis gaditana CCMP526]
Length = 1057
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 21/185 (11%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N + A +A R +EA +L+++ KG+ PD SYN I AC + + + L
Sbjct: 728 VTNLAMRACAQAGRWEEAVGLLQNMTSKGIAPDQWSYNTAIHACAQAGNAEKALKL---L 784
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
K+ GQ+ G PD+ +Y T + D+++ L ++ EM + + +F A++
Sbjct: 785 KEMGQE----GVVPDVVSYTTAMDACASVGDVETSLRLLEEMVK-KGVHPNHRSFNAIMS 839
Query: 138 ALLYSG----SIKVVGLYALCIFGEIVKR------VCSNPGLWPKPHLYVSMMHELAARV 187
A +G +I V+GL VK +C GLW V MH A RV
Sbjct: 840 AHGNAGQATEAIAVLGLMTEHGLTPDVKSYTLAMDICLRQGLWQVALKIVERMH--ATRV 897
Query: 188 DYDIV 192
+D +
Sbjct: 898 RFDAI 902
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
+FEE + +LN IV +++I+ + RIDEAY ILE ++KGL P+ ++N L+
Sbjct: 658 LFEE---AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMD 714
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K ++++ + + +K+ KCS P+ +TY+ L+ G + EM
Sbjct: 715 ALVKAEEINEALICFQSMKE--MKCS-----PNTYTYSILINGLCRVQKYNKAFVFWQEM 767
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
+ L+ + T+T M+ L G+I
Sbjct: 768 QK-QGLVPNVVTYTTMIAGLAKVGNI 792
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66
+ ++ + L+ NAV++ ++ ++D+AY++LE ++ K + P +Y +I K +
Sbjct: 592 MKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDR 651
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
LD E+ K S G ++ Y++L+ GF + I+ EM L
Sbjct: 652 LDEAYMLFEEAK-------SKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMK-KGLT 703
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+ T+ +++DAL+ + I AL F + + CS P + Y +++ L
Sbjct: 704 PNVYTWNSLMDALVKAEEIN----EALICFQSMKEMKCS-----PNTYTYSILINGLCRV 754
Query: 187 VDYD 190
Y+
Sbjct: 755 QKYN 758
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ + N+++ + +++DEA + E+++K EP+S +YNI+I K++ +
Sbjct: 356 SVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRD 415
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+++ G P++ T ++ AK + E+ FE S + T+ ++
Sbjct: 416 EME-------HAGLFPNLLTVNIMVDRLCKAKKFEPAYEM-FETASQRGCNPNSVTYCSL 467
Query: 136 VDALLYSGSI 145
+D L G++
Sbjct: 468 IDGLGKKGNV 477
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIK 63
NE++ R +TI N++I+ + + EA Q+ + V KG EPD ++Y+ILI++ K
Sbjct: 339 NEMITR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 397
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++D M ++ SS G P+ TY TL++GF + L + E+ EM S
Sbjct: 398 AKRVDDGMRLFREI-------SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 448
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
IFE+ + + L + N +I A ++D+A+ + S+ +KG++PD ++YN++I
Sbjct: 477 IFEK---MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIG 533
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L ++K++G C+ PD FTY L+ L S +E++ EM
Sbjct: 534 GLCKKGSLSEADMLFRKMKEDG--CT-----PDDFTYNILIRAHLGGSGLISSVELIEEM 586
Query: 120 KSCCNLILDRSTFTAMVDAL 139
K C D ST ++D L
Sbjct: 587 K-VCGFSADSSTIKMVIDML 605
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + +I + +A+R+D+ ++ + KGL P++++YN L+ ++ KL+
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA---- 439
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K+ Q+ S G P + TY LL G +L LEI +M+
Sbjct: 440 ---KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ 482
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
+ + +A+I+ + ++ EA ++ E + +G+ PD+++YN LI K L + F
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 373
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ + S G PDI TY+ L+ + AK + + + E+ S LI + T+
Sbjct: 374 DLMV--------SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS-KGLIPNTITYN 424
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+V SG + A +F E+V R
Sbjct: 425 TLVLGFCQSGKLNA----AKELFQEMVSR 449
>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g39230, mitochondrial; AltName: Full=Protein LATERAL
ORGAN JUNCTION; Flags: Precursor
gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
Length = 867
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTK 65
+N +++ N ++ N +I + + +A ++L+++ EK SYN +I +K
Sbjct: 545 MNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVG 604
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
D + ++ +NG+ P++ T+ +L+ GF + + LE+ EMKS L
Sbjct: 605 DTDSAVETYREMSENGKS-------PNVVTFTSLINGFCKSNRMDLALEMTHEMKS-MEL 656
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
LD + A++D +K A +F E+ + GL P +Y S++
Sbjct: 657 KLDLPAYGALIDGFCKKNDMKT----AYTLFSELPEL-----GLMPNVSVYNSLISGFRN 707
Query: 186 RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
D Y++M D IS ++ +++ L DG ++LA D
Sbjct: 708 LGKMDAAIDLYKKMVNDG---ISCDLFTYT--TMIDGLLKDGNINLASD 751
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
E W + + N + + ++D A L+ +E KG+EP+ + YN ++ A + K +D+
Sbjct: 443 ESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDL 502
Query: 70 TMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
F+E L+ G P+ FTY+ L+ GF KD Q+ +++ +M + N +
Sbjct: 503 ARSIFSEMLEK--------GLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNA-SNFEAN 553
Query: 129 RSTFTAMVDALLYSG 143
+ +++ L G
Sbjct: 554 EVIYNTIINGLCKVG 568
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIK 63
NE++ R +TI N++I+ + + EA Q+ + V KG EPD ++Y+ILI++ K
Sbjct: 368 NEMITR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 426
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++D M ++ SS G P+ TY TL++GF + L + E+ EM S
Sbjct: 427 AKRVDDGMRLFREI-------SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 477
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
IFE+ + + L + N +I A ++D+A+ + S+ +KG++PD ++YN++I
Sbjct: 506 IFEK---MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIG 562
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L ++K++G C+ PD FTY L+ L S +E++ EM
Sbjct: 563 GLCKKGSLSEADMLFRKMKEDG--CT-----PDDFTYNILIRAHLGGSGLISSVELIEEM 615
Query: 120 KSCCNLILDRSTFTAMVDAL 139
K C D ST ++D L
Sbjct: 616 K-VCGFSADSSTIKMVIDML 634
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + +I + +A+R+D+ ++ + KGL P++++YN L+ ++ KL+
Sbjct: 413 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA---- 468
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K+ Q+ S G P + TY LL G +L LEI +M+
Sbjct: 469 ---KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ 511
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
+ + +A+I+ + ++ EA ++ E + +G+ PD+++YN LI K L + F
Sbjct: 343 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 402
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ + S G PDI TY+ L+ + AK + + + E+ S LI + T+
Sbjct: 403 DLMV--------SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS-KGLIPNTITYN 453
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+V SG + A +F E+V R
Sbjct: 454 TLVLGFCQSGKLNA----AKELFQEMVSR 478
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+++ +++R EA ++L+ +E G P ++YN LISA + L+ +
Sbjct: 305 DKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELK 364
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
Q+ + G K PD+FTY TLL GF A ++ ++I EM++
Sbjct: 365 NQMVEKGIK-------PDVFTYTTLLSGFEKAGKDKAAVQIFEEMRN 404
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
++ + ++ ++I A R EA + + +E+ G +P ++YN++++ K
Sbjct: 193 KDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGK----- 247
Query: 69 VTMPFNEQ--LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ MP+N+ L D + S G PD +TY TL+ R + ++ EMK
Sbjct: 248 MGMPWNKMVGLVD---RMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMK-LAGFS 303
Query: 127 LDRSTFTAMVD 137
D+ T+ A++D
Sbjct: 304 PDKVTYNALLD 314
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 30/157 (19%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N++I A +++A ++ + VEKG++PD +Y L+S K K + E+
Sbjct: 342 VTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEE 401
Query: 77 LKDNGQK---CS----------SGGF---------------HPDIFTYATLLMGFRHAKD 108
+++ G K C+ G F PDI T+ TLL F
Sbjct: 402 MRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQ-NG 460
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+ S + VF+ + +R TF ++ + GS
Sbjct: 461 MDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSF 497
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+ PDS +YN LIS C + + +++K GF PD TY LL +
Sbjct: 266 GIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMK-------LAGFSPDKVTYNALLDVYGK 318
Query: 106 AKDLQSLLEIVFEMK 120
++ + +E++ EM+
Sbjct: 319 SRRSKEAMEVLQEME 333
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 1 IFEENEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
+ + NEI++ R + + N+++ + + + +IL E + KG+ PD +SYN
Sbjct: 637 VAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNT 696
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I A + ++ +++++G PDI TY T + + +++V
Sbjct: 697 VIYAYCRNGRMRDASRVLSEMRESGPA-------PDIITYNTFIASYAADSMFVEAIDVV 749
Query: 117 -FEMKSCCNLILDRSTFTAMVD 137
+ +K C ++ST+ ++VD
Sbjct: 750 CYMIKHGCK--PNQSTYNSIVD 769
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + + NA++ + + A I+E + K GL+PD ++Y LI C K +LD M
Sbjct: 379 KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAME 438
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++ D G D TY L+ G A I+ EM L D +T+
Sbjct: 439 MKQEMSDEGVAL-------DDVTYTALISGLSKAGRSVDAERILCEMME-AGLQPDNTTY 490
Query: 133 TAMVDALLYSGSIKV 147
T ++DA +G +K
Sbjct: 491 TMVIDAFCKNGDVKT 505
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
E + ++ E L+ + A+I +A R +A +IL E +E GL+PD+ +Y ++I A
Sbjct: 437 MEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDA 496
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVF 117
K + +++++ G+ +P I TY ++ GF K+ LL +
Sbjct: 497 FCKNGDVKTGFKHLKEMQNKGK-------NPGIVTYNVVMNGFCSLGQMKNADMLLNAML 549
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ C N I T+ ++D G ++
Sbjct: 550 NIGVCPNDI----TYNILLDGHCKHGKVR 574
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
A I+ + RI +A ++ E + E+GL P+++ LI A K + + ++
Sbjct: 316 GAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMAT 375
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G K D+ Y L+ GF +D+++ +IV EM+ L D+ T+T ++D
Sbjct: 376 RGVKA-------DLVAYNALVNGFCRVRDMKAANDIVEEMRK-DGLKPDKVTYTTLIDGC 427
Query: 140 LYSGSI 145
G +
Sbjct: 428 CKEGEL 433
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +G++P +++N L+S K L+ + + G PD++TY +
Sbjct: 267 EMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLM-------AKAGIAPDVYTYGAFI 319
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRST--FTAMVDALLYSGSI 145
G +Q +E+ EM C L+ +T T ++DA G +
Sbjct: 320 QGLCKTGRIQDAMEMFEEM---CERGLNPNTVVLTTLIDAHCKEGDV 363
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ + VI + +D A +IL + G+ PD ++Y ++ + K+D
Sbjct: 78 VTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVR 137
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++K G PD FT++ L+ G+ +A+ + L++ E+ + + D T+TA+
Sbjct: 138 EMKLKG-------VEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTAL 190
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+D SG+++ A+ + G + R C P Y S++H L D D
Sbjct: 191 IDGFCKSGNLE----KAMKMLGVMEGRKCV-----PNVVTYSSLLHGLCKAGDLDQALDL 241
Query: 196 YRRM 199
+RRM
Sbjct: 242 FRRM 245
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ NA+++ RI+EA Q+ E K PD ++Y L+ +L+
Sbjct: 288 DTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLL 347
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E +K ++ G PD+ TY+ ++ G+ AK E + EM + N+ + T+++
Sbjct: 348 ENMK------TAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIA-RNVAPNAVTYSS 400
Query: 135 MVDALLYSGSI 145
++D L +G +
Sbjct: 401 LIDGLCKAGRV 411
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 23 VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQ 82
+I+ +A ++ +A E + + + P+ +YN++++ K + ++++D
Sbjct: 13 IIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKS 72
Query: 83 KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142
PD+ TY+T++ GF ++ EI+ EM + + D T+T++VD L
Sbjct: 73 ------VAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRD 126
Query: 143 GSI 145
G +
Sbjct: 127 GKM 129
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
EI+ WK + + A+I+ ++ +++A ++L +E + P+ ++Y+ L+ K
Sbjct: 172 KEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCK 231
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
LD Q D ++ +S G P++ TY TL+ G A + + ++ EM + C
Sbjct: 232 AGDLD-------QALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
D ++ A++D G I+ A +F E+ + C
Sbjct: 285 -CPPDTVSYNALLDGYCRLGRIE----EAKQLFKEMATKSC 320
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +++I+ +A R+D A ++L++ V K +EP ++N +I A + +D
Sbjct: 394 NAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLL 453
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ ++ G P + TY TLL GF +EI +E+
Sbjct: 454 VAM-------AAHGLEPGMVTYTTLLEGFSRT----GRMEIAYEL 487
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+ NT+ NA+I EA +EA ++L E +E+GL DS+SYN LI AC K K++
Sbjct: 438 FAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGF 497
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E++ G PD++TY LL G + ++ + E K N D T
Sbjct: 498 KLKEEMVRR-------GIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFP-DAYT 549
Query: 132 FTAMVDA 138
+ M+D
Sbjct: 550 YGIMIDG 556
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + R+DEA+Q E +EK ++P ++Y +LI+ +K ++ D
Sbjct: 231 NVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCIL 290
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+++ D G+ P+ Y TL+ G+ ++ + L+I +M S
Sbjct: 291 KEMSDR-------GYAPNNVVYNTLIDGYCRIGNISTALQIRDDMIS 330
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
F+ E + +E K + + +I + +R DEA IL E ++G P+++ YN LI
Sbjct: 252 FQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDG 311
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ + + Q++D+ S G P+ T +L+ G+ + ++ ++ EM
Sbjct: 312 YCRIGNISTAL----QIRDD---MISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEML 364
Query: 121 SCCNLILDRSTFTAMVDAL 139
+ +I ++ TFT+++ L
Sbjct: 365 TGGGVI-NQGTFTSVIHRL 382
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ + ++ A R+D+A ++ +EK G+ P+ ++YN +I K +LD F E++
Sbjct: 199 LFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKM 258
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGF 103
+ K P + TY L+ G
Sbjct: 259 EKERVK-------PSLVTYGVLINGL 277
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + + NA++ + + A I+E + K GL+PD ++Y LI C K +LD M
Sbjct: 251 KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAME 310
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++ D G D TY L+ G A I+ EM L D +T+
Sbjct: 311 MKQEMSDEGVAL-------DDVTYTALISGLSKAGRSVDAERILCEMME-AGLQPDNTTY 362
Query: 133 TAMVDALLYSGSIKV 147
T ++DA +G +K
Sbjct: 363 TMVIDAFCKNGDVKT 377
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
E + ++ E L+ + A+I +A R +A +IL E +E GL+PD+ +Y ++I A
Sbjct: 309 MEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDA 368
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVF 117
K DV F + LK+ K G +P I TY ++ GF K+ LL +
Sbjct: 369 FCKNG--DVKTGF-KHLKEMQNK----GKNPGIVTYNVVMNGFCSLGQMKNADMLLNAML 421
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ C N I T+ ++D G ++
Sbjct: 422 NIGVCPNDI----TYNILLDGHCKHGKVR 446
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 22 AVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
A I+ + RI +A ++ E + E+GL P+++ LI A K + + ++
Sbjct: 189 AFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATR 248
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G K D+ Y L+ GF +D+++ +IV EM+ L D+ T+T ++D
Sbjct: 249 GVKA-------DLVAYNALVNGFCRVRDMKAANDIVEEMRK-DGLKPDKVTYTTLIDGCC 300
Query: 141 YSGSI 145
G +
Sbjct: 301 KEGEL 305
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +G++P +++N L+S K L+ + + G PD++TY +
Sbjct: 139 EMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLM-------AKAGIAPDVYTYGAFI 191
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRST--FTAMVDALLYSGSI 145
G +Q +E+ EM C L+ +T T ++DA G +
Sbjct: 192 QGLCKTGRIQDAMEMFEEM---CERGLNPNTVVLTTLIDAHCKEGDV 235
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+I EA +I E EKG PDS +YNILI+ K +L++ + ++++ + GF
Sbjct: 106 QIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQ-------ARGFS 158
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
P + TY TL+ GF A + + ++I+ EM+ + + T+TA++ L G ++
Sbjct: 159 PTVVTYTTLIHGFCTAGRVDAAMDILDEMEH-RGITPNTVTYTALIQGLCDCGEVE 213
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEA--YQILESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+L+ ++ N++I+ + +D A QIL VEKG+ PD +Y LI LD +
Sbjct: 300 ELDVVIYNSLIDGLCKMGELDFAREMQIL-MVEKGVAPDVFTYTSLIQGLCDAGLLDEAL 358
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++++ + G P+ TY TL+ GF A L++V EMKS
Sbjct: 359 GLMQEMR-------AKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKS 401
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 33 IDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
++ A + E V G E D + YN LI K +LD + + G PD
Sbjct: 285 LEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEK-------GVAPD 337
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
+FTY +L+ G A L L ++ EM++ ++ + T+T +++ + +A
Sbjct: 338 VFTYTSLIQGLCDAGLLDEALGLMQEMRA-KGIVPNSVTYTTLINGFTQADRTD----HA 392
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLY 176
L ++V + SN GL P +Y
Sbjct: 393 L----QLVNEMKSN-GLMPAGDIY 411
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E +N++ + N + A+I++ + ++EA ++ E ++ +G EPD+++Y++L++ K+
Sbjct: 349 ETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKS 408
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKS 121
+LD M +L D C + G + YA+L+ G A +D ++L E + E K
Sbjct: 409 GRLDDGM----ELFDF---CRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSE-KG 460
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
C D + A++DAL G I AL +FG + + C
Sbjct: 461 CAR---DSYCYNAIIDALAKHGKID----QALALFGRMEEEGC 496
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N ++ + I+ A ++ E ++ G + PD+++YNI+I K KL M E+ +D
Sbjct: 224 NFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAM---EKFRD 280
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K PD TY TL+ +D + L + EM+
Sbjct: 281 MEMK----NVKPDKITYMTLIQACYSERDFDTCLSLYLEME 317
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N++I+ + R+D+ E ++ EPD ++YN LI+ K KL + F
Sbjct: 167 DTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFF 226
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K +G K P++ +Y+TL+ F +Q L+ +M+ L+ + T+T+
Sbjct: 227 REMKQSGLK-------PNVVSYSTLVDAFCKEDMMQQALKFYVDMRR-LGLVPNEHTYTS 278
Query: 135 MVDALLYSGSI 145
+VDA G++
Sbjct: 279 LVDAYCKIGNL 289
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N +I+ + I+ A + E ++ +GL PD+++YN +I K +LD T+
Sbjct: 130 KPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVY 189
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
F E++K S PD+ TY TL+ F L LE EMK L + ++
Sbjct: 190 FFEEMK-------SMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQ-SGLKPNVVSY 241
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+ +VDA ++ AL + ++ +R+ GL P H Y S++
Sbjct: 242 STLVDAFCKEDMMQ----QALKFYVDM-RRL----GLVPNEHTYTSLV 280
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+FEE ++ + + + N +++ +++R EA ++L+ +E G P ++YN LIS
Sbjct: 310 VFEEMKLSG---FSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLIS 366
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A + L M +Q+ + G K PD+FTY TLL GF A + + I EM
Sbjct: 367 AYARDGLLREAMELKDQMVEKGIK-------PDVFTYTTLLSGFEKAGMDEPAMRIFGEM 419
Query: 120 KS 121
++
Sbjct: 420 RA 421
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+ PD +YN LIS C + + E++K GF PD T+ TLL +
Sbjct: 283 GVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMK-------LSGFSPDKVTFNTLLDVYGK 335
Query: 106 AKDLQSLLEIVFEMK 120
++ + +E++ EM+
Sbjct: 336 SRRPKEAMEVLKEME 350
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 1 IFEENEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNI 56
+ + NEI+N + + N+++ ++ + + ++L+ + KGL+PD +SYN
Sbjct: 653 VAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNT 712
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCS---SGGFHPDIFTYATLLMGFRHAKDLQSLL 113
+I A + N ++KD + S + G PD+ TY T + + + +
Sbjct: 713 VIFAYCR----------NGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAI 762
Query: 114 EIV-FEMKSCCNLILDRSTFTAMVDA 138
+V + +K C +++T+ ++VD
Sbjct: 763 GVVRYMIKHGCK--RNQNTYNSIVDG 786
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+++ +++R EA ++L +E G P ++YN LISA + L M
Sbjct: 138 DKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELK 197
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
Q+ + GG + D+FTY TLL GF A +S + + EM++
Sbjct: 198 NQMVE-------GGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRA 237
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
++++ + L+ ++I A R EA + + +E+ G +P ++YN++++ K
Sbjct: 24 LHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK--- 80
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ MP+N ++K + + G PD +TY TL+ R + + +MKS +
Sbjct: 81 --MGMPWN-KIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKS-MGFV 136
Query: 127 LDRSTFTAMVD 137
D+ T+ A++D
Sbjct: 137 PDKVTYNALLD 147
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 5 NEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA 60
NEI+N + + N+++ ++ + + ++L+ + KG++PD++SYN +I A
Sbjct: 474 NEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFA 533
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV-FEM 119
+ ++ +++++ G PD+ TY T + + + +++V + +
Sbjct: 534 YCRNGRMKEASRIFSEMRES-------GLVPDVITYNTFVASYAADSMFEDAIDVVRYMI 586
Query: 120 KSCCNLILDRSTFTAMVDA 138
K C +++T+ ++VD
Sbjct: 587 KHGCK--PNQNTYNSVVDG 603
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ A ++LE + K G P+SLSYN L+ A K KK+D M F
Sbjct: 85 NVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFV 144
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFT 133
E + S G +PDI +Y TLL ++ ++++ ++K C+ +L ++
Sbjct: 145 ELM-------VSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVL--ISYN 195
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++D L +G K AL + E++ + GL P Y ++ L
Sbjct: 196 TVIDGLTKAGKTK----EALELLDEMISK-----GLQPDIITYTTIASGLC 237
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + EA ++L E + KGL+PD ++Y + S + K++ + +
Sbjct: 192 ISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCK 251
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++D G P + Y +L+G ++ + +++ M S + + ST+T +V
Sbjct: 252 VQDM-------GIRPTVVLYNAILLGLCKRRETHNAIDLFSYMIS-NGCMPNESTYTILV 303
Query: 137 DALLYSGSIK 146
+ L Y G +K
Sbjct: 304 EGLAYEGLVK 313
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +KG PD ++YN++++ + ++D M F E L S G P+ +Y +L
Sbjct: 6 EMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENL-------PSYGGEPNTVSYNIVL 58
Query: 101 MGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGE 158
G A+ + +++ EM K C ++ TF ++ L G ++ A+ + +
Sbjct: 59 KGLFTAERWEDAEKLMEEMAHKGCPPNVV---TFNMLISFLCRRGLVEP----AMEVLEQ 111
Query: 159 IVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHL 218
I K C+ L P L+ + + + R +PD + +
Sbjct: 112 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIV----------SYNT 161
Query: 219 LMEAALNDGQVDLALDKL 236
L+ A +G+VD+A+D L
Sbjct: 162 LLTALCRNGEVDVAIDLL 179
>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
Length = 967
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 77/147 (52%), Gaps = 11/147 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK 63
NE+ + +L+ I N +I+ +R++EA + E +++ G++P+ +S+N L+ +C+K
Sbjct: 397 NEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVK 456
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR----HAKDLQSLLEIVFEM 119
K++V + E+++ G PD FTY+ L+ G + + +L + ++ ++
Sbjct: 457 CNKMNVAWRYFEEMR------KQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQI 510
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIK 146
+ D + +++DA + I+
Sbjct: 511 QETGQFKPDEILYNSLIDACVKFNEIQ 537
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 36 AYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95
A+Q+ E ++ +PD + YN L+ ACI L+ ++K S D T
Sbjct: 358 AFQLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMK------QSQSIQLDEIT 411
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
Y TL+ G K L + + EMK + +R +F +++D+ + + V Y
Sbjct: 412 YNTLIKGCGRKKRLNEAISLFEEMKQ-IGIKPNRISFNSLLDSCVKCNKMNVAWRY---- 466
Query: 156 FGEIVKRVCSNPGLWPKPHLY 176
F E+ K+ G++P Y
Sbjct: 467 FEEMRKQY----GIFPDNFTY 483
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFN 74
+I++N + + A +LE +++ +PD + YN LI AC+K ++ M
Sbjct: 484 SILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQLF 543
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++K+ P TY L+ + DL + EMK + ++ T+
Sbjct: 544 KEMKN-------KSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQ-KKIPINDVTYGC 595
Query: 135 MVDA 138
+VDA
Sbjct: 596 LVDA 599
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEP-DSLSYNILISACIKTKKLDVTMPFNE 75
++ +I+A + ++ A+++ E +++ P + ++Y L+ AC++ +LD + F E
Sbjct: 555 SVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIE 614
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+K S + Y T++ GF + ++ MK + T+ ++
Sbjct: 615 QMK-------SQNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQRTYPNLITYNSL 667
Query: 136 VDALLYSG 143
+D L+ +G
Sbjct: 668 LDGLVKNG 675
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE + + + LN ++ +++I+ + RIDEAY ILE + +KGL P+S ++N L+
Sbjct: 679 LFEEAKSIGVD---LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLD 735
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K +++D + +K+ KCS P+ TY+ ++ G + EM
Sbjct: 736 ALVKAEEIDEAQVCFQNMKN--LKCS-----PNAMTYSIMINGLCMIRKFNKAFVFWQEM 788
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
+ L + T+T M+ L +G++
Sbjct: 789 QK-QGLKPNNITYTTMIAGLAKAGNV 813
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 19/180 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I A + DEAY +LE + KG P ++YN +++ + K++ + +++++
Sbjct: 347 NTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQ 406
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ P++ TY L+ A +L++ L++ MK L + T M+D L
Sbjct: 407 DAA--------PNLTTYNILIDMLCKAGELEAALKVQDTMKE-AGLFPNIMTVNIMIDRL 457
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
+ + A IF + +VCS P + S++ L R D S Y +M
Sbjct: 458 CKAQKLD----EACSIFLGLDHKVCS-----PDSRTFCSLIDGLGRRGRVDDAYSLYEKM 508
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + N VI+ ++ ++D+AYQ+LE ++ KGL+P ++Y ++ K +LD
Sbjct: 620 LDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYML 679
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+ K S G ++ Y++L+ GF + I+ E+ L + T+
Sbjct: 680 FEEAK-------SIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQ-KGLTPNSYTWN 731
Query: 134 AMVDALLYSGSI 145
++DAL+ + I
Sbjct: 732 CLLDALVKAEEI 743
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
+ + ++ N I+ + ++D A++ ++ +GL PD ++Y LI K ++LD +
Sbjct: 269 FTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAV 328
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLE 114
E+L N P ++ Y T++MG+ A SLLE
Sbjct: 329 ELFEELDLNRSV-------PCVYAYNTMIMGYGSAGKFDEAYSLLE 367
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +++N+ ++ +A +++ + E ++ +GL PD SY+ILI +K T
Sbjct: 551 DLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLF 610
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++K+ G H D+ Y T++ GF + + +++ EMK+
Sbjct: 611 YEMKEQ-------GLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKT 650
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 24/185 (12%)
Query: 17 TIVMNAVIEA--SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+I+++ +++A SRE ++ E E+GL D L+YN +I K+ K+D
Sbjct: 591 SILIHGLVKAGFSRETYKL-----FYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLL 645
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++K + G P + TY +++ G L ++FE + L+ +++
Sbjct: 646 EEMK-------TKGLQPTVVTYGSVVDGLAKIDRLDEAY-MLFEEAKSIGVDLNVVIYSS 697
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++D G I A I E++++ GL P + + ++ L + D +
Sbjct: 698 LIDGFGKVGRID----EAYLILEELMQK-----GLTPNSYTWNCLLDALVKAEEIDEAQV 748
Query: 195 PYRRM 199
++ M
Sbjct: 749 CFQNM 753
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N ++ +++EA +I + + + P+ +YNILI K +L+ + +
Sbjct: 377 SVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQD 436
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+K+ G P+I T ++ A+ L I + K C D TF
Sbjct: 437 TMKE-------AGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSP---DSRTFC 486
Query: 134 AMVDALLYSGSI 145
+++D L G +
Sbjct: 487 SLIDGLGRRGRV 498
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E +N++ + N + A+I++ + ++EA ++ E ++ +G EPD+++Y++L++ K+
Sbjct: 347 ETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKS 406
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKS 121
+LD M +L D C + G + YA+L+ G A +D ++L E + E K
Sbjct: 407 GRLDDGM----ELFDF---CRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSE-KG 458
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
C D + A++DAL G I AL +FG + + C
Sbjct: 459 CAR---DSYCYNAIIDALAKHGKID----QALALFGRMEEEGC 494
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N ++ + I+ A ++ E ++ G + PD+++YNI+I K KL M E+ +D
Sbjct: 222 NFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAM---EKFRD 278
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K PD TY TL+ +D + L + EM+
Sbjct: 279 MEMK----NVKPDKITYMTLIQACYSERDFDTCLSLYLEME 315
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFN 74
N +V +A+I +A+++D A ++L ++K PD+++YN+LI K+ ++ F
Sbjct: 160 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFF 219
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G K PD++TY L+ GF A + + + + + +D T+TA
Sbjct: 220 DEMLEAGCK-------PDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTA 272
Query: 135 MVD 137
+VD
Sbjct: 273 IVD 275
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFN 74
N +V +A+I +A+++D A ++L ++K PD+++YNILI K+ ++ F
Sbjct: 441 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 500
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+++ + G K PD++TY L+ GF A + + + +M S
Sbjct: 501 DEMLEAGCK-------PDVYTYNILISGFCKAGNTDAACGVFDDMSS 540
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
A+++ + ++I+EA ++E + G P +YN L++ K +L+ + ++ D
Sbjct: 271 TAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD 330
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
NG C+ PD+ TY +L+ G K ++ EM + L LD +TA++ L
Sbjct: 331 NG--CT-----PDVVTYTSLIDGLGKEKRSFEAYKLFKEM-ALRGLALDTVCYTALIREL 382
Query: 140 LYSGSI 145
L +G I
Sbjct: 383 LQTGKI 388
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 32 RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+I+EA ++E + G P +YN L++ K +L+ + ++ DNG C+
Sbjct: 1 KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG--CT----- 53
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
PD+ TY +L+ G K ++ EM + L LD +TA++ LL +G I
Sbjct: 54 PDVVTYTSLIDGLGKEKRSFEAYKLFKEM-ALRGLALDTVCYTALIRELLQTGKI 107
>gi|145476181|ref|XP_001424113.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391176|emb|CAK56715.1| unnamed protein product [Paramecium tetraurelia]
Length = 337
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK 63
NE+ + +L+ I N +I+ +R++EA + E +++ G++P+ +S+N L+ +C+K
Sbjct: 183 NEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVK 242
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
K++V + E+++ G PD FTY+ L+ G +
Sbjct: 243 CNKMNVAWRYFEEMR------KQYGIFPDNFTYSILVNGIK 277
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 36 AYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95
A+Q+ E ++ +PD + YN L+ ACI L+ ++K S D T
Sbjct: 144 AFQLFEEYKQFNQPDQIIYNCLLDACINAGDLNRGFQLLNEMK------QSQSIQLDEIT 197
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
Y TL+ G K L + + EMK + +R +F +++D+ + + V Y
Sbjct: 198 YNTLIKGCGRKKRLNEAISLFEEMKQ-IGIKPNRISFNSLLDSCVKCNKMNVAWRY---- 252
Query: 156 FGEIVKRVCSNPGLWPKPHLY 176
F E+ K+ G++P Y
Sbjct: 253 FEEMRKQY----GIFPDNFTY 269
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
NT++ N +I + R +EA +L V G EPD+ ++NI+I K L + F
Sbjct: 335 NTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEF 394
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+++ GF P++ TY L+ GF + ++V M S L L+ +
Sbjct: 395 LDEMVKK-------GFEPNVITYTILIDGFCKQGHFEEASKVVNSM-SAKGLSLNTVGYN 446
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
++ AL G I+ AL ++GE+ + C P + + S+++ L +
Sbjct: 447 CLIGALCKDGKIQD----ALQMYGEMSSKGCK-----PDIYTFNSLIYGLCKNDKMEEAL 497
Query: 194 SPYRRM 199
YR M
Sbjct: 498 GLYRDM 503
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + ++++A Q L + +++GL PD ++YN LI+ K + + L+
Sbjct: 586 NILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQ- 644
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ G HPD TY TL+ + + +++F+
Sbjct: 645 ------AKGIHPDAVTYNTLISRYCYEGLFNDACQLLFK 677
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+FEE ++ ++ + + NA+++ +++R EA ++L+ +E P ++YN L+S
Sbjct: 272 LFEEIKVAG---FRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVS 328
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A ++ L+ + ++ D G K PD++TY TLL GF +A + +E+ EM
Sbjct: 329 AYVRGGLLEDALVLKRKMVDKGIK-------PDVYTYTTLLSGFVNAGKEELAMEVFEEM 381
Query: 120 K 120
+
Sbjct: 382 R 382
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
GL PD +YN LIS C + + E++K GF PD TY LL +
Sbjct: 245 GLAPDLCTYNTLISCCRAGSLYEEALDLFEEIK-------VAGFRPDAVTYNALLDVYGK 297
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
++ + +E++ +M+S + T+ ++V A + G ++ AL ++KR
Sbjct: 298 SRRPKEAMEVLKQMES-NSFRPSVVTYNSLVSAYVRGGLLED----AL-----VLKRKMV 347
Query: 166 NPGLWPKPHLYVSMM 180
+ G+ P + Y +++
Sbjct: 348 DKGIKPDVYTYTTLL 362
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 5 NEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
NEI+N L+ N+++ + ++ QI E ++KG+EPD +SYNI+I A
Sbjct: 620 NEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYA 679
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV-FEM 119
+ +D E++K PD+ TY T + + ++++ + +
Sbjct: 680 YCRNDMMDEAKRIIEEMKVPAPV-------PDVVTYNTFIAAYAADSMFVEAIDVIRYMI 732
Query: 120 KSCCNLILDRSTFTAMVD 137
K C + +T+ ++VD
Sbjct: 733 KQGCK--PNHNTYNSIVD 748
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + N+++ A +++A + V+KG++PD +Y L+S + K ++ M
Sbjct: 316 FRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAM 375
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
E+++ G K P+I T+ L+ + + ++++ E+K C
Sbjct: 376 EVFEEMRKVGCK-------PNICTFNALIKMYGDRGKFEEMVKVFKEIKVC 419
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I +A+R DEAY+IL +E +G +PD +++ +LI ++
Sbjct: 352 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKD 411
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDR 129
++K + QK PD TY TLL F D QS++EI MK+ N++
Sbjct: 412 VFWKMKKSDQK-------PDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVV--- 461
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+TA++DAL G + AL +F E+ ++ G+ P+ + Y S++
Sbjct: 462 -AYTAVIDALCQVGRV----FEALEMFDEMKQK-----GIVPEQYSYNSLI 502
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N ++ R A ++ + + V++G+ PD SY I+I K +L+ +
Sbjct: 1017 KANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLT 1076
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ QL + G PD+ TY L+ G +K L+ + + EM+ ++ + T+
Sbjct: 1077 YFRQLLEM-------GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQK-KGIVPNLYTY 1128
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
+++ L +G G ++ E++ + G P Y +++ + D
Sbjct: 1129 NSLILHLGKAGKAAEAGK----MYEELLTK-----GWKPNVFTYNALIRGYSVSGSTDSA 1179
Query: 193 KSPYRRM 199
+ Y RM
Sbjct: 1180 YAAYGRM 1186
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 14/189 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP- 72
K TI+++ + +A + + Q+LE GLEPD ++YN+LI K+K+L+ +
Sbjct: 1056 KSYTIIIDTLCKAGQLNDGLTYFRQLLEM---GLEPDLITYNLLIDGLGKSKRLEEAVSL 1112
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
FNE K G P+++TY +L++ A ++ E+ + + T+
Sbjct: 1113 FNEMQKK--------GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLT-KGWKPNVFTY 1163
Query: 133 TAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
A++ SGS Y I G + ++ P ++ ++ + Y
Sbjct: 1164 NALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTDSSNCSSPEAVGTVRKQITSHRSYHN 1223
Query: 192 VKSPYRRMW 200
K P + W
Sbjct: 1224 AKEPTTKAW 1232
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A ++ RI+E ++ E + KG E ++YN +IS +K+++L EQ D
Sbjct: 919 NLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL-------EQAID 971
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S GF P TY LL G A ++ + EM
Sbjct: 972 LYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 1011
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI +I+ +A + DEA +I + +E PD L+ N LI K + D
Sbjct: 599 DTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIF 658
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRH---AKDLQSLLEIVFEMKSCCNLILDRST 131
QLK+ + + G TY TLL G K++ LLE ++ NLI T
Sbjct: 659 YQLKEMNLEPTDG-------TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI----T 707
Query: 132 FTAMVDALLYSGSI 145
+ ++D L +G++
Sbjct: 708 YNTILDCLCKNGAV 721
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L T + N++I + ID A + E E G PD +YN+L+ A K+ +++ +
Sbjct: 878 LKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 937
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++ G+ TY T++ G ++ L+ +++ + + S T+
Sbjct: 938 QEEMHRK-------GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS-QGFSPTPCTYG 989
Query: 134 AMVDALLYSGSIK 146
++D LL +G I+
Sbjct: 990 PLLDGLLKAGRIE 1002
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + AVI+A + R+ EA ++ + + +KG+ P+ SYN LIS +K + +
Sbjct: 459 NVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELF 518
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV-FEMKSCCNLILDRSTFT 133
+ + +G K P+ +T+ L + + + K +S+ I +E+ ++ D
Sbjct: 519 KHMDIHGPK-------PNGYTH-VLFINY-YGKSGESIKAIQRYELMKSKGIVPDVVAGN 569
Query: 134 AMVDALLYSGSI 145
A++ L SG +
Sbjct: 570 AVLFGLAKSGRL 581
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
E + + NA+I A+R+ +A ++ E +++ P+ ++Y+++I K+ +LD
Sbjct: 146 EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDE 205
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+QL D + S G PD+ Y L++GF A L S L ++ M S I D
Sbjct: 206 A----QQLLD---RMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVS-QGCIPDV 257
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
T+T ++D L G + A IF E+V CS
Sbjct: 258 VTYTVVIDKLCKVGRVD----DAHEIFRELVANKCS 289
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N NA+++ + R+D A ++ E+ ++ PD ++YN L++A + ++D +
Sbjct: 81 NAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATF 140
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS---- 130
Q+ + G+ P + ++ ++ G A+ L LE+ EM +DR
Sbjct: 141 TQMTEE-------GYVPTLVSFNAIITGLCRARRLADALEVFNEM-------IDRDFHPN 186
Query: 131 --TFTAMVDALLYS 142
T++ ++D L S
Sbjct: 187 LVTYSVVIDGLCKS 200
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
NE+++R+ + N + + VI+ ++ ++DEA Q+L+ V +G PD ++Y L+
Sbjct: 176 NEMIDRD-FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSA 234
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
+LD + ++ S G PD+ TY ++
Sbjct: 235 AGRLDSALGLLRRM-------VSQGCIPDVVTYTVVI 264
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 3 EENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILI 58
E ++++R E + + + ++ A R+D A +L V +G PD ++Y ++I
Sbjct: 205 EAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 264
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K ++D +L N KCS P++ TY+ L+ G+ A + +++ E
Sbjct: 265 DKLCKVGRVDDAHEIFRELVAN--KCS-----PNVVTYSALIGGYCRASRVDEGGKVMRE 317
Query: 119 MKSCCNLILDRSTFTAMV 136
M N++ T+ M+
Sbjct: 318 MACRPNVV----TYNTMI 331
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ +I++ + R AQ ++ LE +PD +SY LI+ K ++D
Sbjct: 11 RTTSIILQGLCRCGRVAQALEHFDASLELAHA--QPDVVSYTTLINGLCKLGRVDAAFDL 68
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ ++GG P+ FTY L+ G L + ++ E + + D T+
Sbjct: 69 FRKM------VAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARK-RDFAPDVVTYN 121
Query: 134 AMVDALLYSGSI 145
++ AL G +
Sbjct: 122 TLMAALFQLGRV 133
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 32 RIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+IDEAY+I++ ++ G PD ++Y +LI A +KLD M ++K + K
Sbjct: 279 KIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHK------- 331
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
PD TY TLL F L + +I EM++ D TFT +V+AL +G I
Sbjct: 332 PDKVTYVTLLDKFSDCGHLDKVEKIWTEMEA-DGYAPDVVTFTILVNALCKAGRIN---- 386
Query: 151 YALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
A + + K+ G+ P H Y +++ L A R+D
Sbjct: 387 EAFDLLDTMRKQ-----GVLPNLHTYNTLISGLLRANRLD 421
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ IV+N++I+ +A R++EA+Q+ +E+ L P ++YNIL++ K ++ +
Sbjct: 543 DVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLF 602
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + NG CS P+ T+ TLL ++ L++ ++M + N D TF
Sbjct: 603 ESM--NGHGCS-----PNTITFNTLLDCLCKNDEVDLALKMFYKMTT-MNCRPDVLTFNT 654
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVK-------RVCS-NPGLWPKPHLYVSMMHELAAR 186
++ + IK A+ +F ++ K +C+ PG+ + E A R
Sbjct: 655 IIHGFIKQNQIK----NAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQI------EDAFR 704
Query: 187 VD----YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLME 221
+ Y + + R W D G I E E L E
Sbjct: 705 ITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGE 743
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T N++I+A ++ +I+E + + E + +G +P++++YN++IS +K+ +LD M
Sbjct: 824 DTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLY 883
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
L SG F P T+ L+ G + L E+
Sbjct: 884 YNL-------VSGDFSPTPCTFGPLIDGLLKSGRLDDAHEM 917
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N+ + N ++ + +D A + + V++G+ PD SY IL+ ++D + +
Sbjct: 929 NSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYF 988
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+LK G PD+ Y ++ G ++ + L + EM++ ++ D T+ +
Sbjct: 989 EKLK-------QAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQN-RGIVPDLYTYNS 1040
Query: 135 MVDALLYSGSIKVVG 149
++ L G I+ G
Sbjct: 1041 LILNLGIVGMIEEAG 1055
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N +I+ E ++ A+ + E ++ G PD+ +YN LI A K+ K++ +++
Sbjct: 792 VYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEM 851
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
G K P+ TY ++ + L +++ + + S + TF ++D
Sbjct: 852 LTRGCK-------PNTITYNMVISNLVKSNRLDKAMDLYYNLVS-GDFSPTPCTFGPLID 903
Query: 138 ALLYSGSI 145
LL SG +
Sbjct: 904 GLLKSGRL 911
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNE 75
TI++NA+ +A R I+EA+ +L+++ K G+ P+ +YN LIS ++ +LD +
Sbjct: 373 TILVNALCKAGR----INEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFS 428
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLL 100
++ S G P +TY L+
Sbjct: 429 NME-------SLGVEPTAYTYILLI 446
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
E K + +A++ AS + + I +LE +E GL P+ +Y I I + K+D
Sbjct: 223 EGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDE 282
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+++ D+G C PD+ TY L+ A+ L + + +MKS + D+
Sbjct: 283 AYRIMKRMDDDG--CG-----PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKP-DK 334
Query: 130 STFTAMVDALLYSGSIKVV 148
T+ ++D G + V
Sbjct: 335 VTYVTLLDKFSDCGHLDKV 353
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ +++R+++AY++ ++ D+++YN++++ K+ T+ E LK+
Sbjct: 158 FNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTL---EVLKE 214
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++ G +P++ TY T+L GF A ++ E EMK + +D T+T +V
Sbjct: 215 MVER----GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK-RDCEIDVVTYTTVVHGF 269
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+G IK A +F E+++ G+ P Y +M+ L +
Sbjct: 270 GVAGEIK----RARNVFDEMIRE-----GVLPSVATYNAMIQVLCKK 307
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + A+I A I++A ++ E +E G PD++ Y LIS + KLD
Sbjct: 483 KGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASF 542
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++K+ GF PDI ++ L+ GF L E++ EM++ + D T+
Sbjct: 543 VLSKMKE-------AGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMEN-AGIKPDGVTY 594
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++ +G A + ++VK GL P Y +++H + D
Sbjct: 595 NTLISHFSKTGDFST----AHRLMKKMVKE-----GLVPTVVTYGALIHAYCLNGNLDEA 645
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+R M ST + P ++L+ + QVDLAL
Sbjct: 646 MKIFRDM--SSTSKVPPNTV--IYNILINSLCRKNQVDLAL 682
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 21 NAVIEA---SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
NA++ A +RE +R++ + E E ++P+ +++ ILI+ K +++D + E++
Sbjct: 309 NALLTALGRAREFKRMNTL--LAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM 366
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
NG + + PD+ TY TL+ G + L +V M+S + + T+ ++D
Sbjct: 367 --NGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLID 424
Query: 138 A 138
Sbjct: 425 G 425
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA 60
FE + RE ++ N NA+I+ + +I EAY++L + +GL+ D ++Y ++I+
Sbjct: 381 FELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITE 440
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVF 117
K + + ++ +NG C HPDI TY TL+ + R ++ Q L +
Sbjct: 441 HCKQGHITYALDLFNRMAENG--C-----HPDIHTYTTLIARYCQQRQMEESQKLFDKCL 493
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
++ L+ + T+T+M+ G AL +F +V+ C
Sbjct: 494 AIE----LVPTKQTYTSMIAGYCKVGK----STSALRVFERMVQNGC 532
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
+++ +K N +I + ++ A +L VE+GL P++ +Y LIS K
Sbjct: 315 KLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKE 374
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ +++ GF P+I+TY L+ G +Q + V M +
Sbjct: 375 GSFNCAFELMNKMRRE-------GFQPNIYTYNALIDGLCKKGKIQEAYK-VLRMANNQG 426
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
L LD+ T+T M+ G I YAL +F + + C P H Y +++
Sbjct: 427 LQLDKVTYTVMITEHCKQGHIT----YALDLFNRMAENGCH-----PDIHTYTTLI 473
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
E + + NA+I A+R+ +A ++ E +++ P+ ++Y+++I K+ +LD
Sbjct: 196 EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDE 255
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+QL D + S G PD+ Y L++GF A L S L ++ M S I D
Sbjct: 256 A----QQLLD---RMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVS-QGCIPDV 307
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
T+T ++D L G + A IF E+V CS
Sbjct: 308 VTYTVVIDKLCKVGRVD----DAHEIFRELVANKCS 339
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N NA+++ + R+D A ++ E+ ++ PD ++YN L++A + ++D +
Sbjct: 131 NAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATF 190
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS---- 130
Q+ + G+ P + ++ ++ G A+ L LE+ EM +DR
Sbjct: 191 TQMTEE-------GYVPTLVSFNAIITGLCRARRLADALEVFNEM-------IDRDFHPN 236
Query: 131 --TFTAMVDALLYS 142
T++ ++D L S
Sbjct: 237 LVTYSVVIDGLCKS 250
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
NE+++R+ + N + + VI+ ++ ++DEA Q+L+ V +G PD ++Y L+
Sbjct: 226 NEMIDRD-FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSA 284
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
+LD + ++ S G PD+ TY ++
Sbjct: 285 AGRLDSALGLLRRM-------VSQGCIPDVVTYTVVI 314
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ +I++ + R AQ ++ LE +PD +SY LI+ K ++D
Sbjct: 61 RTTSIILQGLCRCGRVAQALEHFDASLELAHA--QPDVVSYTTLINGLCKLGRVDAAFDL 118
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ ++GG P+ FTY L+ G L + ++ E + + D T+
Sbjct: 119 FRKM------VAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARK-RDFAPDVVTYN 171
Query: 134 AMVDALLYSGSI 145
++ AL G +
Sbjct: 172 TLMAALFQLGRV 183
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 3 EENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILI 58
E ++++R E + + + ++ A R+D A +L V +G PD ++Y ++I
Sbjct: 255 EAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 314
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K ++D +L N KCS P++ TY+ L+ G+ A + +++ E
Sbjct: 315 DKLCKVGRVDDAHEIFRELVAN--KCS-----PNVVTYSALIGGYCRASRVDEGGKVMRE 367
Query: 119 MKSCCNLILDRSTFTAMV 136
M N++ T+ M+
Sbjct: 368 MACRPNVV----TYNTMI 381
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK------GLEPDSLSYNILISACIKT 64
E N I N V+ +A RIDEA ++ + +EK G EPD +SY+ +I A K
Sbjct: 174 EECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKA 233
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+++D + ++++ + G P++ TY++L+ G LE++ MK
Sbjct: 234 QRVDKAYEYFKRMR-------AVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKE-KG 285
Query: 125 LILDRSTFTAMVDAL 139
++ F AM+ AL
Sbjct: 286 FGINIIDFNAMLHAL 300
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 29/231 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N + +A R+DEAY+I LE VE + PD ++Y+ +I K ++D
Sbjct: 322 KPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMD---- 377
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ D + P T+ TLL GF K + + +M + I T+
Sbjct: 378 ---KADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVN-AGFIPGLQTY 433
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++D + + S++ AL I+ ++ ++ P + Y ++ L D
Sbjct: 434 NVLMDCVCGADSVE----SALEIYHKMKRK-----KRQPDCNTYAPLIQCLCRARRVDEA 484
Query: 193 KSPYRRMWPDST---GTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240
K M D+ G I H L+E G+VD A L N +
Sbjct: 485 KEFLDVMEADNVVPNGAIC--------HALVEVLCKQGEVDEACSVLDNVV 527
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
K++ ++ + +I+ RIDEA + +S+ + P+ ++YN +++ K ++D +
Sbjct: 143 KMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALEL 202
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRST 131
+ ++ + +S G PD+ +Y+T++ A+ + E M++ C ++ T
Sbjct: 203 FDDMEKRYE--ASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV---T 257
Query: 132 FTAMVDAL 139
+++++D L
Sbjct: 258 YSSLIDGL 265
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 41 ESVEKGLEPDSLSYNILISAC-IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E +G++PD ++YN L+SAC I+ + M F + + GG PD+ TY+ L
Sbjct: 237 EMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVF--------RTMNDGGIVPDLTTYSHL 288
Query: 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159
+ F + L+ + +++ EM S +L D +++ +++A SGSIK A+ +F ++
Sbjct: 289 VETFGKLRRLEKVSDLLSEMASGGSLP-DITSYNVLLEAYAKSGSIK----EAMGVFHQM 343
Query: 160 VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW-----PD-STGTISPEVQE 213
C+ P + Y +++ YD V+ + M PD +T I EV
Sbjct: 344 QAAGCT-----PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398
Query: 214 EAGHL 218
E G+
Sbjct: 399 EGGYF 403
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K N ++ +I+ + R EA +IL+ ++K G++PD L YN +I K++K+
Sbjct: 478 KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKM----- 532
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E+ KD + G P+++TY L+ G+ + ++Q EM C + +
Sbjct: 533 --EEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLG-CGIAPNDVVC 589
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
TA++D GS C+ G V P Y +++H L
Sbjct: 590 TALIDGYCKEGSTTEATSIFRCMLGRSVH---------PDVRTYSALIHGL 631
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T +NA+++ ++ ++ EA Q+LE V+K ++PD ++Y ILI KT L
Sbjct: 794 STSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEA---- 849
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ + QK + P+ TY LL G+ A + + EM + ++ D T++
Sbjct: 850 EQFFVDMQKRN---LMPNALTYTALLSGYNMAGRRSEMFALFDEMIA-KDIEPDGVTWSV 905
Query: 135 MVDALLYSGS-IKVVGLY--ALCIFGEIVKRVC 164
M+DA L G +K + L L G + K VC
Sbjct: 906 MIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVC 938
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
F+ +E + ++ N I NA+I +A I+ A ++ + + KGL ++++Y +I
Sbjct: 676 FQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDG 735
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K+ L +++ + G PD F Y+ L+ G R + + L + E
Sbjct: 736 YCKSGNLSKAFRLFDEM-------TLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLE-- 786
Query: 121 SCCNLILDRSTFTAMVDALLYSGSI 145
S S+ A++D SG +
Sbjct: 787 SVQKGFASTSSLNALMDGFCKSGKV 811
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+A+I ++ A ++L E +EKGL PD +YN +IS K + +E +
Sbjct: 625 SALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYM-- 682
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
C G P+I TY L+ G A +++ E+ F+ L + T+ ++D
Sbjct: 683 ----CQK-GISPNIITYNALINGLCKAGEIERAREL-FDGIPGKGLAHNAVTYATIIDGY 736
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
SG++ A +F E+ + G+ P +Y +++
Sbjct: 737 CKSGNLS----KAFRLFDEMTLK-----GVPPDSFVYSALI 768
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 17 TIVMNAVIEA--SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
T ++NA A ++E +R+ + E EKG P ++YN++I + ++D
Sbjct: 240 THLINAHFRAGNAKEGKRL-----LFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELK 294
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + G D+FTY+ L+ GF K ++ EM S L +TA
Sbjct: 295 KLMDKK-------GLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFS-KGLKPGHVAYTA 346
Query: 135 MVDALLYSG 143
++D + G
Sbjct: 347 LIDGFMRQG 355
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES--VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
NT++ N +I + R +EA +L + V G EPD+ ++NI+I +K L +
Sbjct: 340 NTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALEL 399
Query: 74 -NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
NE + F P++ TY L+ GF L+ EIV M S L L+ +
Sbjct: 400 LNEMVAKR--------FEPNVITYTILINGFCKQGRLEEAAEIVNSM-SAKGLSLNTVGY 450
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++ AL G+I+ AL +FGE+ S G P + + S+++ L +
Sbjct: 451 NCLICALCKDGNIE----EALQLFGEM-----SGKGCKPDIYTFNSLINGLCKNHKMEEA 501
Query: 193 KSPYRRMW 200
S Y M+
Sbjct: 502 LSLYHDMF 509
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
NE+V + ++ N I +I + R++EA +I+ S+ KGL +++ YN LI A K
Sbjct: 401 NEMVAKR-FEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCK 459
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
++ E L+ G+ S G PDI+T+ +L+ G ++ L + +M
Sbjct: 460 DGNIE------EALQLFGEM-SGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDM-FLE 511
Query: 124 NLILDRSTFTAMVDALLYSGSIK 146
+I + T+ +V A L SI+
Sbjct: 512 GVIANTVTYNTLVHAFLMRDSIQ 534
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ I N +I+A + +++ + E + KG+ P +S NILIS +T K++ + F
Sbjct: 550 LDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKF 609
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
L+D + G PDI TY +L+ G +Q + +++S
Sbjct: 610 ---LQDMIHR----GLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQS 650
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 21/197 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+A + RIDEA+ +L+S+ KG++P+ +SYN++I+ + +
Sbjct: 248 NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAW--- 304
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L++ G K GF PD TY TLL G+ + L I EM + T+TA
Sbjct: 305 EILEEMGYK----GFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR-NGVSPSVVTYTA 359
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
+++++ + ++ A+ F ++ R GL P Y +++ + + ++
Sbjct: 360 LINSMCKARNLN----RAMEFFDQMRIR-----GLRPNERTYTTLIDGFSRQ---GLLNE 407
Query: 195 PYRRMWPDSTGTISPEV 211
YR + + SP V
Sbjct: 408 AYRILNEMTESGFSPSV 424
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA I +R++EA ++ E VEKGL PD +SY+ +IS + +LD
Sbjct: 423 SVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 482
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G PD TY++L+ G + L ++ EM L D T+T
Sbjct: 483 QEMVEK-------GVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLD-MGLPPDEFTYTT 534
Query: 135 MVDALLYSGSI 145
+++A G +
Sbjct: 535 LINAYCVEGDL 545
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 33 IDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+D A+Q+ E VEKG+ PD+++Y+ LI + ++L ++++ D G P
Sbjct: 475 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG-------LPP 527
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
D FTY TL+ + DL L + EM + D T++ +++ L
Sbjct: 528 DEFTYTTLINAYCVEGDLNKALHLHDEMIH-KGFLPDAVTYSVLINGL 574
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 33 IDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
++EAY+IL E E G P ++YN I ++++ + +++ + G P
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK-------GLAP 457
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEM 119
D+ +Y+T++ GF +L ++ EM
Sbjct: 458 DVVSYSTIISGFCRKGELDRAFQMKQEM 485
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTK---KLD 68
+ ++ V + ++++ ID+A + + G P LSYN ++ A ++++ KL
Sbjct: 138 YNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLS 197
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
+ E ++ P+++TY L+ GF +LQ L EM ++ C +
Sbjct: 198 AEEVYREMIRSR--------VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGC--LP 247
Query: 128 DRSTFTAMVDALLYSGSI 145
+ T+ ++DA G I
Sbjct: 248 NVVTYNTLIDAYCKMGRI 265
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 32/214 (14%)
Query: 6 EIVNREHWKL---NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA- 60
+++ R KL N ++ N +I++ + + ++EA+ + E V KG+ PD ++YN LIS
Sbjct: 198 QLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGF 257
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVF 117
CI K D T FN+ + +N +P+++T+ L+ GF R K+ +++L ++
Sbjct: 258 CIVGKMKDATDLFNKMIFEN--------INPNVYTFNILVDGFCKERRLKEAKNVLAMMM 309
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+ + D T+ +++D + A IF I +R G+ P H Y
Sbjct: 310 KQ----GIKPDVFTYNSLMDRYCLVKEVN----KAKHIFNTISQR-----GVNPNIHSYS 356
Query: 178 SMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV 211
M+H D + ++ M ++ I P+V
Sbjct: 357 IMIHGFCKIKKVDEAMNLFKEMHCNN---IIPDV 387
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + +I A ++++ + ++G+ D ++YN ++ A K ++D +
Sbjct: 386 DVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALL 445
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++KD G PDI TY TL+ G L+ IVFE ILD + +TA
Sbjct: 446 TKMKDE-------GIQPDICTYTTLVDGLCKNGRLED-ARIVFEDLLVKGYILDVNIYTA 497
Query: 135 MVDALLYSG 143
M+ G
Sbjct: 498 MIQGFCSHG 506
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
++ K + N++++ + +++A I ++ ++G+ P+ SY+I+I K KK+D
Sbjct: 310 KQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVD 369
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
M +++ N PD+ TY +L+ G + L++V EM + D
Sbjct: 370 EAMNLFKEMHCN-------NIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHD-RGVPHD 421
Query: 129 RSTFTAMVDALLYSGSI-KVVGLYA----------LCIFGEIVKRVCSNPGL 169
+ T+ +++DAL + + K + L +C + +V +C N L
Sbjct: 422 KITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRL 473
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 41 ESVEKGLEPDSLSYNILISAC-IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E +G++PD ++YN L+SAC I+ + M F + + GG PD+ TY+ L
Sbjct: 237 EMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVF--------RTMNDGGIVPDLTTYSHL 288
Query: 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159
+ F + L+ + +++ EM S +L D +++ +++A SGSIK A+ +F ++
Sbjct: 289 VETFGKLRRLEKVCDLLGEMASGGSLP-DITSYNVLLEAYAKSGSIK----EAMGVFHQM 343
Query: 160 VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW-----PD-STGTISPEVQE 213
C+ P + Y +++ YD V+ + M PD +T I EV
Sbjct: 344 QAAGCT-----PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398
Query: 214 EAGHL 218
E G+
Sbjct: 399 EGGYF 403
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I A A++++EA ++LE + E+G P+ ++YN+L+ A K +
Sbjct: 56 NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA---- 111
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
+D +K GGF P++ T+ +L+ GF + D + LL I+ N++ T
Sbjct: 112 ---QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVV----T 164
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
++A++D L S L A + E+ G+ P Y +++H L +
Sbjct: 165 YSALIDGLCKSQKF----LEAKEVLEEM-----KASGVTPDAFTYSALIHGLCKADKIEE 215
Query: 192 VKSPYRRM 199
+ RRM
Sbjct: 216 AEQMLRRM 223
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +I+ + R++EA +L+ +++ G P+ ++Y LIS K +K+D
Sbjct: 337 DVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVM 396
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
E++++ G P++ TY T++ G K+ Q L++ + + ++ C+ D +T
Sbjct: 397 EEMRN-------AGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECS--PDAAT 447
Query: 132 FTAMVDALLYS 142
+ +V+AL+ S
Sbjct: 448 YRTIVNALMSS 458
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 27/159 (16%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A ++LE ++ G PD+ ++ +I+A LD M + L+ S G P++
Sbjct: 9 ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAM---DHLR-------SMGCDPNVV 58
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKS-CC--NLILDRSTFTAMVDALLYSGSIKVVGLY 151
TY L+ F AK L+ ++++ EM+ C NL+ T+ +VDAL + +VG
Sbjct: 59 TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLV----TYNVLVDALC---KLSMVGAA 111
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
++VK++ G P + S++ R + D
Sbjct: 112 Q-----DVVKKMIEG-GFAPNVMTFNSLVDGFCKRGNVD 144
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+ ++Q+ EA ++LE ++ G+ PD+ +Y+ LI K K++
Sbjct: 161 NVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQML 220
Query: 75 EQLKDNGQK-------------CSSGGF---------------HPDIFTYATLLMGFRHA 106
++ +G C SG PD+ TY T++ G
Sbjct: 221 RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 280
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142
+ I+ +M+ +++ D T++ +++ L S
Sbjct: 281 GKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS 316
>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 793
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 23/193 (11%)
Query: 2 FEENEIVN--REHW-KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNIL 57
E E++N EHW N I AV+ R ++ EA + E VEKG P + N+L
Sbjct: 498 LEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLL 557
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
I + + +K+ + E+ C + G ++ + T++ GF D+++ L ++
Sbjct: 558 IQSLCQNQKVVEAKKYLEE-------CLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLD 610
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+M D T+TA+ DAL G + E++ ++ S GL P P Y
Sbjct: 611 DM-YLSGKHPDAVTYTALFDALGKKGRLDEA--------AELIVKMLSK-GLDPTPVTYR 660
Query: 178 SMMHELA--ARVD 188
S++H + RVD
Sbjct: 661 SVIHRYSQWGRVD 673
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 31 QRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
++I+E ++E + L PD ++YN LI K D + F ++ +D G
Sbjct: 354 KKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDK-------G 406
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDALLYSGSI 145
FH D Y+ ++ F + +V +M S CN D T+TA+VD G I
Sbjct: 407 FHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCN--PDVVTYTAIVDGFCRLGRI 462
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
V+ + A ++ A ++L ++K G+EP N I +K KL+ + F E+++ G
Sbjct: 241 VMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTG 300
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K PDI TY +L+ G+ ++ LE++ + S
Sbjct: 301 IK-------PDIVTYNSLIKGYCDLNRIEDALELIAGLPS 333
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K N I A RIDEA +I++ +E G PD ++Y +LI A KLD M
Sbjct: 261 KPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAME 320
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++K + K PD TY T+L F DL + E EM++ D TF
Sbjct: 321 LFVKMKASSHK-------PDRVTYITMLDKFSDCGDLGRVKEFWSEMEA-DGYAPDVITF 372
Query: 133 TAMVDALLYSGSI 145
T +V+AL +G+I
Sbjct: 373 TILVNALCKAGNI 385
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
E K + +A++ A+ + + + +LE +E GL+P+ +Y I I + ++D
Sbjct: 223 EGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDE 282
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
++++D+G C PD+ TY L+ A L +E+ +MK+ + DR
Sbjct: 283 ACRIMKRMEDDG--CG-----PDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKP-DR 334
Query: 130 STFTAMVDALLYSGSIKVV 148
T+ M+D G + V
Sbjct: 335 VTYITMLDKFSDCGDLGRV 353
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 35/214 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ IV+N++I +A R+DEA+++ + + L P ++YN LI+ K ++ M
Sbjct: 543 DIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELF 602
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ NG C P+ T+ T+L ++ L+++++M + N + D TF
Sbjct: 603 ASMTGNG--CP-----PNTITFNTILDCLCKNDEVDLALKMLYKMTT-MNCMPDVLTFNT 654
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSN--------PGLWPKP------HLYVSMM 180
++ L+ + A+ +F ++ K + + PG+ + +
Sbjct: 655 IIHGLVIEKRVSD----AIWLFHQMKKMLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFV 710
Query: 181 HELAARVDYDIVKSPYRRMWPDSTGTISPEVQEE 214
H L VD RR W D G I + E
Sbjct: 711 HRLGVYVD--------RRFWEDLMGGILTQAGTE 736
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 22/172 (12%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A ++ +I+E +++ E + +P+++++NI+I+ +K+ LD + L
Sbjct: 829 NLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDL-- 886
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDA 138
SG F P TY LL G + L+ E+ EM C + + + +++
Sbjct: 887 -----VSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCR--PNNAIYNILING 939
Query: 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
+G + C E+ KR+ G+ P Y S++ L A RVD
Sbjct: 940 FGKTGDVNTA-----C---ELFKRMVRE-GIRPDLKSYTSLVGCLCEAGRVD 982
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 29 EAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQLKDNGQKCSS 86
++ R++EA ++ E V+ G P++ YNILI+ KT ++ F +++
Sbjct: 907 KSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVRE------- 959
Query: 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
G PD+ +Y +L+ A + L FE L LD + M+D L S I+
Sbjct: 960 -GIRPDLKSYTSLVGCLCEAGRVDDALH-YFEKLKQTGLYLDSIAYNLMIDGLGRSHRIE 1017
Query: 147 VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
AL ++ E+ R G+ P Y S++ L
Sbjct: 1018 ----EALTLYDEMQSR-----GINPDLFTYNSLILNLG 1046
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+++ N +++ +A ++DEA ++L + E EPD + N LI+ K ++D
Sbjct: 508 DSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMF 567
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+LKD P + TY TL+ G +Q +E+ M
Sbjct: 568 CRLKDM-------KLAPTVVTYNTLIAGLGKEGQVQRAMELFASM 605
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + ++ A ++ + V +G+ PD SY L+ + ++D + +
Sbjct: 929 NNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYF 988
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+LK G + D Y ++ G + ++ L + EM+S + D T+ +
Sbjct: 989 EKLKQT-------GLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQS-RGINPDLFTYNS 1040
Query: 135 MVDALLYSGSIKVVG-LYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
++ L +G ++ G LY F GL P Y +++ + + D
Sbjct: 1041 LILNLGVAGMVEQAGKLYEELQF----------IGLEPNVFTYNALIRGYSMSGNSDSAY 1090
Query: 194 SPYRRMWPDSTGTISP 209
+ Y+RM G SP
Sbjct: 1091 AVYKRMM---VGGCSP 1103
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 46/265 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I+ +A+R+ EA ++ ++ G+ P+ SYN LI +K K +D +
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 495
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+LK G K PD+ Y T + G + +++ ++ EMK C + + +T
Sbjct: 496 NELKGRGIK-------PDLLLYGTFIWGLCSLEKIEAAKVVMNEMKE-CGIKANSLIYTT 547
Query: 135 MVDALLYSGSIKVVGLYAL------------CIFGEIVKRVCSNP--------------- 167
++DA SG+ GL+ L F ++ +C N
Sbjct: 548 LMDAYFKSGN-PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISND 606
Query: 168 -GLWPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPDSTGTIS-PEVQEEAGHLLM 220
GL ++ +M+ L + + + +M PD T S + + G++L
Sbjct: 607 FGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLE 666
Query: 221 EAALND--GQVDLALDKLSNTITRW 243
AL D ++ + LD L+ T W
Sbjct: 667 ALALRDKMAEIGMKLDLLAYTSLVW 691
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+ + ++ A + E ++ +GL PD+++YN +I K +LD T+ F E++KD
Sbjct: 266 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKD 325
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
C PD+ TY L+ F L LE EMK L + +++ +VDA
Sbjct: 326 ---MCC----EPDVITYNALINCFCKFGKLPIGLEFYREMKG-NGLKPNVVSYSTLVDAF 377
Query: 140 LYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G + + + Y ++RV GL P + Y S++
Sbjct: 378 CKEGMMQQAIKFYV------DMRRV----GLVPNEYTYTSLI 409
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
N I N + N + A+I+ + +++ A + E V+KGL PD +Y L+ K
Sbjct: 601 NRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFK 660
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + +++ + G K D+ Y +L+ G H LQ + EM
Sbjct: 661 QGNVLEALALRDKMAEIGMKL-------DLLAYTSLVWGLSHCNQLQKARSFLEEM 709
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ +++R+++AY++ ++ D+++YN++++ K+ + +++ D
Sbjct: 162 FNTILDVLCKSKRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVD 221
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G +P++ TY T+L GF A ++ E EMK N +D T+T +V
Sbjct: 222 R-------GINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKK-RNCEIDVVTYTTVVHGF 273
Query: 140 LYSGSIK 146
+G IK
Sbjct: 274 GVAGEIK 280
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +DEA ++ E ++ GL P+ +++ LI K ++D+ M +
Sbjct: 210 SVLINGLCKESK----MDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
QL S GF PD+ TY TL+ G DL+ +++ EM S L D+ T+T +
Sbjct: 266 QL-------LSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEM-SMKELKPDKITYTTL 317
Query: 136 VDALLYSGSIKVVGLY 151
+D G ++ Y
Sbjct: 318 IDGSCKEGDLETAFEY 333
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +S+N L+S I+ LD + + G PD++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMH-------ASGVQPDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 208 TYSVLINGLCKESKMDEANELFNEMLD-NGLVPNGVTFTTLIDGHCKNGRVDLA------ 260
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S G P Y +++ L + D
Sbjct: 261 --MEIYKQLLSQ-GFSPDLITYNTLIFGLCKKGD 291
>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
W N I + ++ R + EA ++ E ++KG P + N+LI + + +K+D
Sbjct: 509 WIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAK 568
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F EQ +NG C+ ++ + T++ GF DL++ L ++ +M N D T
Sbjct: 569 RFMEQCLNNG--CAV-----NVVNFTTVIHGFCQKDDLEAALSLLDDM-YLSNKHPDVVT 620
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
+T ++DAL G I+ A+ + RV GL P P Y +++H+
Sbjct: 621 YTTIIDALGKKGRIEEATKLAMKML-----RV----GLIPTPVTYRTVIHQ 662
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ N I R+D+A + LE ++ +EP+ ++YN LI +L+ M ++
Sbjct: 269 ICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEM 328
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGF----RHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
G CS PD +Y T +MGF + K+++ L+E +M NL+ D+ T+
Sbjct: 329 PFKG--CS-----PDKISYYT-VMGFLCKEKRIKEVRLLME---KMLKDSNLLPDQVTYN 377
Query: 134 AMVDALLYSG 143
V L G
Sbjct: 378 TFVHMLSKHG 387
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 10/142 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIK 63
E+ N ++ N I + +++ R+ EA+++ E + + + PD L+YN+LI+ +
Sbjct: 298 EMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCR 357
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K D E +K+NG C P++F Y+ L+ G A LQ ++ EMKS
Sbjct: 358 EGKADRARNVIEFMKNNG--CC-----PNVFNYSALVDGLCKAGKLQDAKGVLAEMKS-S 409
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
L D T+T++++ +G I
Sbjct: 410 GLKPDAITYTSLINFFSRNGQI 431
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 18/177 (10%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + R D+A Q+L+++ ++G++PD +S+N LI+A K+ L + +
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLF 282
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMV 136
+ G PD+ TY TL+ + +L+ + + EM S C D T+ AMV
Sbjct: 283 E-----VRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECR--PDLWTYNAMV 335
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
G + A +FGE+V++ G P Y S+++ A + D V+
Sbjct: 336 SVHGRCGKAE----EAERLFGELVEK-----GFMPDAVTYNSLLYAFAKEGNVDKVE 383
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA++ + +EA ++ E VEKG PD+++YN L+ A K +D +++
Sbjct: 332 NAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVD-------KVEH 384
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++ GF + TY T++ + L + + EM++ D T+T M+D+L
Sbjct: 385 TCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRA-VGCTPDAVTYTVMIDSL 443
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 27/227 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
+K + + N+++ A D Q+ +S+ E GLEPD +YN LI ++ + +
Sbjct: 916 FKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGF 975
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
L + G++ G P + +Y +LL A +L+ + +FE + L+RS
Sbjct: 976 TL---LNEMGKR----GLTPKLQSYKSLLAASAKA-ELREQADQLFEEMRSKSYQLNRSI 1027
Query: 132 FTAMVDALLYSGS-IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
+ M+ +G+ K L A V G+ P ++ MH L Y
Sbjct: 1028 YHMMMKIYRNAGNHSKAENLLA----------VMKEDGIEPT----IATMHILM--TSYG 1071
Query: 191 IVKSPYR-RMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
P+ +S + S EV + +A L +G DL + KL
Sbjct: 1072 TAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKL 1118
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+K + I + +I A+ I +A+ E +E G+EP+ ++YNILI +C T D ++
Sbjct: 491 FKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSV 550
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILD 128
++K+N G PD++ Y + F R K + LL+ + + L D
Sbjct: 551 KLFAKMKEN-------GLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRI----GLKPD 599
Query: 129 RSTFTAMVDALLYSG 143
T++ ++ AL SG
Sbjct: 600 NFTYSTLIKALSESG 614
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G++P + YN +I A +K+ LD+ +Q++ +G K PD FTY L+ G
Sbjct: 175 GMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCK-------PDRFTYNILIHGVCK 227
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+ + +V +M+ N + T+T ++D L +G +
Sbjct: 228 KGVVDEAIRLVKQMEQEGNRP-NVFTYTILIDGFLIAGRV 266
>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
Length = 556
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISA-CIK 63
E+VN+ + N N +I+A R+ + I+ V++G +PD +++N LIS C+
Sbjct: 284 EMVNK-NINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLH 342
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
L+ F+ + G PD+++Y L++G+ K + + + EM+ C
Sbjct: 343 GNVLEARKLFDTVFER--------GILPDVWSYTILIIGYCKCKRIDEAVSLFNEMR-CK 393
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
N++LD +++++D L SG I
Sbjct: 394 NMVLDIVLYSSLIDGLCKSGRI 415
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+N + N I N +I+A + Q ID ++ + + KGL P L+YNILI+ K+K+
Sbjct: 425 INNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKR 484
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ M ++ S PD TY +L G + + E+ F++
Sbjct: 485 IREAMNLLSVMQ-------SKNLAPDSITYNSLFDGLCKSGRISDAWEL-FKVMHVGGPP 536
Query: 127 LDRSTFTAMVDAL 139
+D +T+ ++DA
Sbjct: 537 VDVATYNVLLDAF 549
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + +I + R +A+Q+L+ +E + ++P+ + YN++I + K +
Sbjct: 187 LDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDE-------L 239
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ +D K G PDI TY +L+ GF + +++ EM + N+ + TF
Sbjct: 240 TCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVN-KNINPNVYTFN 298
Query: 134 AMVDALLYSGS-IKVVGLYAL 153
++DA G I+ G++ L
Sbjct: 299 VLIDAFCRKGKMIEAQGMFNL 319
>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 404
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 49/219 (22%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-------ESVEKGLEPDSLS 53
+F + N + + NT+ NA+I+A + D+A Q+ +E G EP+ ++
Sbjct: 103 VFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVIT 162
Query: 54 YNILISACIKTKKLDVTMPFNEQLKDNG----------------QKCSSGGFH------- 90
YN+LI A K LD+ M + ++D C GG +
Sbjct: 163 YNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELV 222
Query: 91 ---------PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
PD TY L+ + A L E F+ N+ +D +TAM+DA
Sbjct: 223 DLMVEHGVQPDHITYTALIDAYGKA-GLWENAENTFKGMKGTNVSVDVMAYTAMIDA--- 278
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G L E + ++ + GL P Y+S+M
Sbjct: 279 ------YGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLM 311
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 46/265 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I+ +A+R+ EA ++ ++ G+ P+ SYN LI +K K +D +
Sbjct: 304 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 363
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+LK G K PD+ Y T + G + +++ ++ EMK C + + +T
Sbjct: 364 NELKGRGIK-------PDLLLYGTFIWGLCSLEKIEAAKVVMNEMKE-CGIKANSLIYTT 415
Query: 135 MVDALLYSGSIKVVGLYAL------------CIFGEIVKRVCSNP--------------- 167
++DA SG+ GL+ L F ++ +C N
Sbjct: 416 LMDAYFKSGN-PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISND 474
Query: 168 -GLWPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPDSTGTIS-PEVQEEAGHLLM 220
GL ++ +M+ L + + + +M PD T S + + G++L
Sbjct: 475 FGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLE 534
Query: 221 EAALND--GQVDLALDKLSNTITRW 243
AL D ++ + LD L+ T W
Sbjct: 535 ALALRDKMAEIGMKLDLLAYTSLVW 559
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+ + ++ A + E ++ +GL PD+++YN +I K +LD T+ F E++KD
Sbjct: 134 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKD 193
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
C PD+ TY L+ F L LE EMK L + +++ +VDA
Sbjct: 194 ---MCC----EPDVITYNALINCFCKFGKLPIGLEFYREMKG-NGLKPNVVSYSTLVDAF 245
Query: 140 LYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G + + + Y ++RV GL P + Y S++
Sbjct: 246 CKEGMMQQAIKFYV------DMRRV----GLVPNEYTYTSLI 277
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
N I N + N + A+I+ + +++ A + E V+KGL PD +Y L+ K
Sbjct: 469 NRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFK 528
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + +++ + G K D+ Y +L+ G H LQ + EM
Sbjct: 529 QGNVLEALALRDKMAEIGMKL-------DLLAYTSLVWGLSHCNQLQKARSFLEEM 577
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I +A+R DEAY+IL +E +G +PD +++ +LI ++
Sbjct: 262 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKD 321
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDR 129
++K + QK PD TY TLL F D QS++EI MK+ N++
Sbjct: 322 VFWKMKKSDQK-------PDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVV--- 371
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+TA++DAL G + AL +F E+ ++ G+ P+ + Y S++
Sbjct: 372 -AYTAVIDALCQVGRV----FEALEMFDEMKQK-----GIVPEQYSYNSLI 412
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A ++ RI+E ++ E + KG E ++YN +IS +K+++L EQ D
Sbjct: 829 NLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL-------EQAID 881
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S GF P TY LL G A ++ + EM
Sbjct: 882 LYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 921
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI +I+ +A + DEA +I + +E PD L+ N LI K + D
Sbjct: 509 DTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIF 568
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRH---AKDLQSLLEIVFEMKSCCNLILDRST 131
QLK+ + + G TY TLL G K++ LLE ++ NLI T
Sbjct: 569 YQLKEMNLEPTDG-------TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI----T 617
Query: 132 FTAMVDALLYSGSI 145
+ ++D L +G++
Sbjct: 618 YNTILDCLCKNGAV 631
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L T + N++I + ID A + E E G PD +YN+L+ A K+ +++ +
Sbjct: 788 LKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 847
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++ G+ TY T++ G ++ L+ +++ + + S T+
Sbjct: 848 QEEMHRK-------GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS-QGFSPTPCTYG 899
Query: 134 AMVDALLYSGSIK 146
++D LL +G I+
Sbjct: 900 PLLDGLLKAGRIE 912
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + AVI+A + R+ EA ++ + + +KG+ P+ SYN LIS +K + +
Sbjct: 369 NVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELF 428
Query: 75 EQLKDNGQK 83
+ + +G K
Sbjct: 429 KHMDIHGPK 437
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+FEE + + + + NA+++ +++R EA ++L+ +E G P ++YN LIS
Sbjct: 313 VFEEMKAAG---FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLIS 369
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A + LD M Q+ G K PD+FTY TLL GF +++ EM
Sbjct: 370 AYARDGLLDEAMELKSQMVKKGIK-------PDVFTYTTLLSGFEKTGKDDYAMKVFEEM 422
Query: 120 K 120
+
Sbjct: 423 R 423
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N++I A +DEA ++ + V+KG++PD +Y L+S KT K D M E+
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEE 421
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++ G P+I T+ L+ + + +++ VFE C + D T+ ++
Sbjct: 422 MR-------VAGCQPNICTFNALIKMHGNRGNFVEMMK-VFEEIKICECVPDIVTWNTLL 473
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
+G V +F E+ KR G P+ + +++ + +D + Y
Sbjct: 474 AVFGQNGMDSEVS----GVFKEM-KRA----GFVPERDTFNTLISAYSRCGFFDQAMAIY 524
Query: 197 RRM 199
RRM
Sbjct: 525 RRM 527
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 22 AVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
++I A R EA + + +E+ G P ++YN++++ K + MP++ ++
Sbjct: 225 SLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGK-----MGMPWS-KIAGL 278
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
S G PD++TY TL+ R + E+ EMK+ D+ T+ A++D
Sbjct: 279 VDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKA-AGFSPDKVTYNALLD 334
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+ PD +YN LIS+C + + E++K + GF PD TY LL +
Sbjct: 286 GVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMK-------AAGFSPDKVTYNALLDVYGK 338
Query: 106 AKDLQSLLEIVFEMKS 121
++ + +E++ EM++
Sbjct: 339 SRRPREAMEVLKEMEA 354
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 5 NEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
NEI+N + + N+++ + +++ IL E + KG++PD +S+N +I A
Sbjct: 661 NEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFA 720
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV-FEM 119
+ ++ ++KD G PD+ TY T + + +++V + +
Sbjct: 721 YCRNGRMKEASRIFAEMKD-------FGLAPDVITYNTFIASYASDSMFIEAIDVVKYMI 773
Query: 120 KSCCNLILDRSTFTAMVD 137
K+ C +++T+ +++D
Sbjct: 774 KNGCK--PNQNTYNSLID 789
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+FEE + + + + NA+++ +++R EA ++L+ +E G P ++YN LIS
Sbjct: 313 VFEEMKAAG---FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLIS 369
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A + LD M Q+ G K PD+FTY TLL GF +++ EM
Sbjct: 370 AYARDGLLDEAMELKSQMVKKGIK-------PDVFTYTTLLSGFEKTGKDDYAMKVFEEM 422
Query: 120 K 120
+
Sbjct: 423 R 423
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N++I A +DEA ++ + V+KG++PD +Y L+S KT K D M E+
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEE 421
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++ G P+I T+ L+ + + +++ VFE C + D T+ ++
Sbjct: 422 MR-------VAGCQPNICTFNALIKMHGNRGNFVEMMK-VFEEIKICECVPDIVTWNTLL 473
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
+G V +F E+ KR G P+ + +++ + +D + Y
Sbjct: 474 AVFGQNGMDSEVS----GVFKEM-KRA----GFVPERDTFNTLISAYSRCGFFDQAMAIY 524
Query: 197 RRM 199
RRM
Sbjct: 525 RRM 527
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 22 AVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
++I A R EA + + +E+ G P ++YN++++ K + MP++ ++
Sbjct: 225 SLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGK-----MGMPWS-KIAGL 278
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
S G PD++TY TL+ R + E+ EMK+ D+ T+ A++D
Sbjct: 279 VDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKA-AGFSPDKVTYNALLD 334
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+ PD +YN LIS+C + + E++K + GF PD TY LL +
Sbjct: 286 GVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMK-------AAGFSPDKVTYNALLDVYGK 338
Query: 106 AKDLQSLLEIVFEMKS 121
++ + +E++ EM++
Sbjct: 339 SRRPREAMEVLKEMEA 354
>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 18/171 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
W N I + ++ R + EA ++ E ++KG P + N+LI + + +K+D
Sbjct: 446 WIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAK 505
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F EQ C + G ++ + T++ GF DL++ L ++ +M N D T
Sbjct: 506 RFMEQ-------CLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM-YLSNKHPDVVT 557
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
+T ++DAL G I+ A+ + RV GL P P Y +++H+
Sbjct: 558 YTTIIDALGKKGRIEEATKLAMKML-----RV----GLIPTPVTYRTVIHQ 599
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ N I R+D+A + LE ++ +EP+ ++YN LI +L+ M ++
Sbjct: 206 ICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEM 265
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGF----RHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
G CS PD +Y T +MGF + K+++ L+E +M NL+ D+ T+
Sbjct: 266 PFKG--CS-----PDKISYYT-VMGFLCKEKRIKEVRLLME---KMLKDSNLLPDQVTYN 314
Query: 134 AMVDALLYSG 143
V L G
Sbjct: 315 TFVHMLSKHG 324
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
V+ + A ++ A ++L ++K G+EPD N I + +LD + F E+++
Sbjct: 175 VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQ--- 231
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDAL 139
P++ TY L+ G+ L+ +E++ EM K C D+ ++ ++ L
Sbjct: 232 ----IVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSP---DKISYYTVMGFL 284
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD-----IVKS 194
IK V L +++++ + L P Y + +H L+ D + ++
Sbjct: 285 CKEKRIKEVRL--------LMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREA 336
Query: 195 PYRRMWPDSTG 205
RR D G
Sbjct: 337 EERRFRVDKVG 347
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I A +IDEAY IL+ ++ G PD ++Y +LI A KL+
Sbjct: 261 NIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELF 320
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K + K PD TY TLL F DL ++ E EM++ + D TFT
Sbjct: 321 LKMKASSHK-------PDRVTYITLLDKFSDHGDLDAIKEFWSEMEA-DGYLPDVVTFTI 372
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
++DAL G + FG + V G+ P H Y +++
Sbjct: 373 LIDALCKVGKVDEA-------FGTL--DVMKKQGVAPNLHTYNTLI 409
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA + + E R++EA + ++K GL PD+++YNIL+ K ++D +
Sbjct: 471 NIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLL 530
Query: 75 EQLKDNG 81
++++NG
Sbjct: 531 SEMEENG 537
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 95/214 (44%), Gaps = 23/214 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N++I+ +A+ + A+ + ++ G PD +YN+ + A K+ K+ E++
Sbjct: 792 NSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLF 851
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G K P+ T+ ++ G + L +++ +++ S + T+ ++D L
Sbjct: 852 RGCK-------PNTITHNIVIFGLVKSNSLDKAIDLYYDLMS-GDFSPTPWTYGPLIDGL 903
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
L G ++ + F E++ C P LY +M+ + D + +RRM
Sbjct: 904 LKLGRLEEAKQF----FEEMLDYGC-----MPNCPLYNILMNGFGKQGDVETACELFRRM 954
Query: 200 WPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+ I P+++ + ++++ G+VD AL
Sbjct: 955 VKEG---IRPDLKSYS--IMVDCLCMVGKVDDAL 983
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V++G+ PD SY+I++ K+D + + E+LK G PD+ Y ++ G
Sbjct: 955 VKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELK-------LSGLDPDLVCYNLMING 1007
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
++ ++ L + EM++ + D T+ A++ L +G ++ G
Sbjct: 1008 LGRSQRVEEALSLFDEMRN-RGITPDLYTYNALILNLGIAGMVEEAG 1053
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPFN 74
+++N++I+ +A R+DEA+++ + + E L P ++YN L++ K ++ + T F
Sbjct: 542 VVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFK 601
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ D+ C P+ ++ TLL ++ L+++F M N D T+
Sbjct: 602 GMIADD---CP-----PNTISFNTLLDCLCKNGEVDLALKMLFRMTE-MNCFPDVLTYNT 652
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRV 163
++ L+ + YA +F ++ K +
Sbjct: 653 VIYGLIKENRVN----YAFWLFHQMKKVI 677
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 43/210 (20%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + A RID+A Q+LE + E G PD ++YN ++S K ++D E L++
Sbjct: 415 NIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRN 474
Query: 80 NGQ-----KCSS-----------------------GGFHPDIFTYATLLMGFRHAKDLQS 111
G CS+ G PD+ Y L+ GF A L
Sbjct: 475 GGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDK 534
Query: 112 LLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169
L EM K C ++ T++ ++D L S ++ G ++ + G+
Sbjct: 535 SLAFFSEMLDKGCVPTVI---TYSIVIDKLCKSARVRD---------GCMLLKTMLERGV 582
Query: 170 WPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
P +Y S++ L YD Y+ M
Sbjct: 583 TPDAIVYTSVIDGLCKSDSYDEAYELYKLM 612
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA 60
F +++ R K + N +I+ + ++D AY++ + ++G PD +YNI+IS
Sbjct: 361 FNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISG 420
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ ++D E++ + G PD+ TY +++ G A + E V+E+
Sbjct: 421 ACRANRIDDARQLLERM-------TEAGCPPDVVTYNSIVSGLCKASQVDEAYE-VYEVL 472
Query: 121 SCCNLILDRSTFTAMVDALLYS 142
LD T + ++D L S
Sbjct: 473 RNGGYFLDVVTCSTLIDGLCKS 494
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 17/133 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ I +++A ++ RI +A ILE +E G P+ ++YN LI+ K +D + F
Sbjct: 235 SVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLF 294
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--NLILDRS 130
N+ L+++ CS PD+FTY L+ G+ + Q +++ EM K C N I
Sbjct: 295 NQMLENS---CS-----PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI---- 342
Query: 131 TFTAMVDALLYSG 143
T+ ++D+L+ SG
Sbjct: 343 TYNTLMDSLVKSG 355
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
+E E++ + L+ + + +I+ +++R+D+A ++L +E+ G PD ++Y ILI
Sbjct: 466 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 525
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL---LMGFRHAKDLQSLLEIVF 117
K +LD ++ F ++ D G C P + TY+ + L +D LL+ +
Sbjct: 526 FCKADQLDKSLAFFSEMLDKG--CV-----PTVITYSIVIDKLCKSARVRDGCMLLKTML 578
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGS 144
E + D +T+++D L S S
Sbjct: 579 ER----GVTPDAIVYTSVIDGLCKSDS 601
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ IV +VI+ ++ DEAY++ + +++ G P ++YN+L+ K +LD +
Sbjct: 585 DAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLL 644
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E ++ S G PD TY ++ GF + + + MKS
Sbjct: 645 EVME-------SDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKS 684
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQL 77
V N +I+ + R+D A +++ P ++Y IL+ A K+ ++ D ++ + +
Sbjct: 204 VYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMI 263
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGF 103
+ G P++ TY TL+ GF
Sbjct: 264 E--------AGCAPNVVTYNTLINGF 281
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 3 EENEIVNREHWKLNTIVMNAVI-EASREAQRIDEAYQILE--SVEKGLEPDSLSYNILIS 59
E+ E+ +R + ++ +V+ ++ +D+A + + + + G + + N L+S
Sbjct: 81 EDFELASRRLCEFGGYLVPSVVGRVLQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLS 140
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A ++ KK ++ D + G PD TY+TL+ GF A+D Q ++ EM
Sbjct: 141 AFVRKKK-------AQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM 193
Query: 120 K 120
+
Sbjct: 194 E 194
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
+E +++ + + N +++ + R+DEA +LE +E G PD+++YN +
Sbjct: 606 YELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDG 665
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
K+ + D + +K G CS P F Y+ LL + + +EI
Sbjct: 666 FWKSAEHDKAFRLFQAMKSRG--CS-----PTPFMYSLLLTKLVAEEKMDQAMEI 713
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
++T NA++ EA +++E ++I E + +G D +SYN LIS C KKLD F
Sbjct: 495 VDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMF 554
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+++ G K PD +TY+ L+ G + ++ ++ + K +I D T++
Sbjct: 555 MDEMVKKGLK-------PDNYTYSILIRGLLNMNKVEEAIQFWGDCKR-NGMIPDVYTYS 606
Query: 134 AMVDA 138
M+D
Sbjct: 607 VMIDG 611
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACI 62
+ EI+ R + ++ + N +I +++DEA+ + E V+KGL+PD+ +Y+ILI +
Sbjct: 520 QKEILGR-GFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLL 578
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K++ + F C G PD++TY+ ++ G A+ + ++ EM S
Sbjct: 579 NMNKVEEAIQF-------WGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMS- 630
Query: 123 CNLILDRSTFTAMVDALLYSGSIKV 147
NL + + ++ A SG + +
Sbjct: 631 NNLQPNTVVYNHLIGAYCRSGRLSM 655
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N VI+ + R DEA+ E VE+G+EP ++Y+IL+ K K++
Sbjct: 286 NVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCV- 344
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ +K GF P++ Y L+ A L +EI M S L L ST+
Sbjct: 345 --LKEMTEK----GFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVS-KGLSLTSSTYNT 397
Query: 135 MVDALLYSGSIKV 147
++ SG +
Sbjct: 398 LIKGYCKSGQADI 410
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+V N +I A + R+ A ++ E ++ KG+ P+S +Y LI +++
Sbjct: 636 NTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLL 695
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G P++F Y L+ G+ + + ++ EM S N+ ++ T+T
Sbjct: 696 EEMRME-------GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS-KNVHPNKITYTV 747
Query: 135 MVDALLYSGSI 145
M+ G++
Sbjct: 748 MIGGYARDGNV 758
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ I A + +++EA ++ +E+ G+ P+ ++YN +I + + D F E++
Sbjct: 254 LFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKM 313
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAK---DLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G P + TY+ L+ G AK D +L+ + E N+I+ +
Sbjct: 314 VER-------GVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIV----YNN 362
Query: 135 MVDALLYSGSI 145
++D+L+ +GS+
Sbjct: 363 LIDSLIEAGSL 373
>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
Length = 321
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
FE E++ N +V N +++A + R EAY +E++ G+ P ++YNILI
Sbjct: 30 FELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIETMRSMGVSPTIVTYNILIDG 89
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG---FRHAKDLQSLLEIVF 117
K +KL + +++ G + P+ TY T L G + D +L +
Sbjct: 90 FCKEEKLHRALEILQEMTGRGHE-------PNHVTYNTFLHGLCKYGKVDDALALFRAMT 142
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
E K + LD +T ++D L +G K+ Y+L E+ N G PKP Y
Sbjct: 143 EKK----IRLDVYGYTTLIDGLCQAG--KLAEAYSL--LDEM-----ENSGCVPKPGCYN 189
Query: 178 SMMHELAARVDYDIVKSPYRRM 199
+++ L + ++RM
Sbjct: 190 AILSWLCKGSRINEAHKLFKRM 211
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ +++ +A R+ +A++++E + E+G P++L +N ++ A K + + E
Sbjct: 11 VTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIET 70
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ S G P I TY L+ GF + L LEI+ EM
Sbjct: 71 MR-------SMGVSPTIVTYNILIDGFCKEEKLHRALEILQEM 106
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+ ++T NA++ EA ++DEA++I E + +G D +SYN LIS C KKLD
Sbjct: 490 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 549
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F +++ G K PD +TY+ L+ G + ++ ++ + K ++ D T
Sbjct: 550 MFLDEMVKRGLK-------PDNYTYSILICGLFNMNKVEEAIQFWDDCKR-NGMLPDVYT 601
Query: 132 FTAMVDA 138
++ M+D
Sbjct: 602 YSVMIDG 608
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACI 62
+ EI+ R ++ + N +I +++DEA+ L E V++GL+PD+ +Y+ILI
Sbjct: 517 QKEILGR-GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLF 575
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++ + F + K N G PD++TY+ ++ G A+ + E EM S
Sbjct: 576 NMNKVEEAIQFWDDCKRN-------GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMS 627
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N + N VI+ R DEA+ E VE+G+EP ++Y+IL+ + K++ D
Sbjct: 283 NVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVL 342
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E K GF P++ Y L+ F A L +EI M S L L ST+
Sbjct: 343 KEMTKK--------GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS-KGLSLTSSTYN 393
Query: 134 AMVDALLYSG 143
++ +G
Sbjct: 394 TLIKGYCKNG 403
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+V N +I A + R+ A ++ E ++ KG+ P+S +Y LI +++
Sbjct: 633 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 692
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G P++F Y L+ G+ + + ++ EM S N+ ++ T+T
Sbjct: 693 EEMRME-------GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS-KNVHPNKITYTV 744
Query: 135 MVDALLYSGSI 145
M+ G++
Sbjct: 745 MIGGYARDGNV 755
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 21/197 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I+ + R +A ++L+ + E+G+ PD YN LI K K++D F
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +NG K P+ FTY + G+ A + S + V EM+ C ++ ++ T
Sbjct: 511 VEMVENGLK-------PNAFTYGAFISGYIEASEFASADKYVKEMRE-CGVLPNKVLCTG 562
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
+++ G + + A + +V + G+ Y +M+ L D +
Sbjct: 563 LINEYCKKGKV----IEACSAYRSMV-----DQGILGDAKTYTVLMNGLFKNDKVDDAEE 613
Query: 195 PYRRMWPDSTGTISPEV 211
+R M I+P+V
Sbjct: 614 IFREMRGKG---IAPDV 627
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 38/173 (21%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTM 71
K T++MN + + ++D+A +I + KG+ PD SY +LI+ K + +
Sbjct: 593 KTYTVLMNGLFKN----DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 72 PFNEQLKDN------------GQKCSSG---------------GFHPDIFTYATLLMGFR 104
F+E +++ G C SG G HP+ TY T++ G+
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157
+ DL + EMK L+ D +T +VD ++ A+ IFG
Sbjct: 709 KSGDLAEAFRLFDEMK-LKGLVPDSFVYTTLVDGCCRLNDVE----RAITIFG 756
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I + ++ EA S V++G+ D+ +Y +L++ K K+D
Sbjct: 556 NKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF 615
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ G PD+F+Y L+ GF ++Q I EM
Sbjct: 616 REMRGKG-------IAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I +A+R DEAY+IL +E +G +PD +++ +LI ++
Sbjct: 227 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKD 286
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDR 129
++K + QK PD TY TLL F D QS++EI MK+ N++
Sbjct: 287 VFWKMKKSDQK-------PDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVV--- 336
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+TA++DAL G + AL +F E+ ++ G+ P+ + Y S++
Sbjct: 337 -AYTAVIDALCQVGRV----FEALEMFDEMKQK-----GIVPEQYSYNSLI 377
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N ++ R A ++ + + V++G+ PD SY I+I K +L+ +
Sbjct: 892 KANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLT 951
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ QL + G PD+ TY L+ G +K L+ + + EM+
Sbjct: 952 YFRQLLEM-------GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ 992
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A ++ RI+E ++ E + KG E ++YN +IS +K+++L EQ D
Sbjct: 794 NLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL-------EQAID 846
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S GF P TY LL G A ++ + EM
Sbjct: 847 LYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 886
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP-FNE 75
TI+++ + +A + + Q+LE GLEPD ++YN+LI K+K+L+ + FNE
Sbjct: 934 TIIIDTLCKAGQLNDGLTYFRQLLE---MGLEPDLITYNLLIDGLGKSKRLEEAVSLFNE 990
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLM 101
K G P+++TY +L++
Sbjct: 991 MQKK--------GIVPNLYTYNSLIL 1008
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI +I+ +A + DEA +I + +E PD L+ N LI K + D
Sbjct: 474 DTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIF 533
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRH---AKDLQSLLEIVFEMKSCCNLILDRST 131
QLK+ + + G TY TLL G K++ LLE ++ NLI T
Sbjct: 534 YQLKEMNLEPTDG-------TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI----T 582
Query: 132 FTAMVDALLYSGSI 145
+ ++D L +G++
Sbjct: 583 YNTILDCLCKNGAV 596
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L T + N++I + ID A + E E G PD +YN+L+ A K+ +++ +
Sbjct: 753 LKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 812
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++ G+ TY T++ G ++ L+ +++ + + S T+
Sbjct: 813 QEEMHRK-------GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS-QGFSPTPCTYG 864
Query: 134 AMVDALLYSGSIK 146
++D LL +G I+
Sbjct: 865 PLLDGLLKAGRIE 877
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + AVI+A + R+ EA ++ + + +KG+ P+ SYN LIS +K + +
Sbjct: 334 NVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELF 393
Query: 75 EQLKDNGQK 83
+ + +G K
Sbjct: 394 KHMDIHGPK 402
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 21/197 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I+ + R +A ++L+ + E+G+ PD YN LI K K++D F
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +NG K P+ FTY + G+ A + S + V EM+ C ++ ++ T
Sbjct: 511 VEMVENGLK-------PNAFTYGAFISGYIEASEFASADKYVKEMRE-CGVLPNKVLCTG 562
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
+++ G + + A + +V + G+ Y +M+ L D +
Sbjct: 563 LINEYCKKGKV----IEACSAYRSMV-----DQGILGDAKTYTVLMNGLFKNDKVDDAEE 613
Query: 195 PYRRMWPDSTGTISPEV 211
+R M I+P+V
Sbjct: 614 IFREMRGKG---IAPDV 627
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 38/173 (21%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTM 71
K T++MN + + ++D+A +I + KG+ PD SY +LI+ K + +
Sbjct: 593 KTYTVLMNGLFKN----DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 72 PFNEQLKDN------------GQKCSSG---------------GFHPDIFTYATLLMGFR 104
F+E +++ G C SG G HP+ TY T++ G+
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157
+ DL + EMK L+ D +T +VD ++ A+ IFG
Sbjct: 709 KSGDLAEAFRLFDEMK-LKGLVPDSFVYTTLVDGCCRLNDVE----RAITIFG 756
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I + ++ EA S V++G+ D+ +Y +L++ K K+D
Sbjct: 556 NKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF 615
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ G PD+F+Y L+ GF ++Q I EM
Sbjct: 616 REMRGKG-------IAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 18/169 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + N +I+ +AQ ID+A + + ++KG++PD+L+Y I+I K + +D
Sbjct: 327 KPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEG 386
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+Q+ D G K ++G TY L+ G+ + +++ + EM S +L D T+
Sbjct: 387 VFQQMIDKGVKPNNG-------TYNCLIHGYLSTGQWEEVVQRIKEM-SAHDLEPDVFTY 438
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
++D L +G A +F ++++ G+ P +Y M+H
Sbjct: 439 GLLLDYLCKNGKCN----EARSLFDSMIRK-----GIKPSVTIYGIMLH 478
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 18/185 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ +AQ +D A + + VEKG++P++++YN +I K +++D+
Sbjct: 224 DVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVF 283
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ D G K P TY T++ G A+ + E VF+ + D T+
Sbjct: 284 QKMVDKGVK-------PSNVTYNTIIDGLCKAQAVDR-AEGVFQQMIDRGVKPDHVTYNT 335
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++D L + +I A +F +++ + G+ P Y ++ L D +
Sbjct: 336 IIDGLCKAQAID----KAEGVFQQMIDK-----GVKPDNLTYTIIIDGLCKAQSVDRAEG 386
Query: 195 PYRRM 199
+++M
Sbjct: 387 VFQQM 391
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + N +I+ +AQ +D A + + +++G++PD ++YN +I K + +D
Sbjct: 292 KPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEG 351
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+Q+ D G K PD TY ++ G A+ + E VF+ + + T+
Sbjct: 352 VFQQMIDKGVK-------PDNLTYTIIIDGLCKAQSVDR-AEGVFQQMIDKGVKPNNGTY 403
Query: 133 TAMVDALLYSG 143
++ L +G
Sbjct: 404 NCLIHGYLSTG 414
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 25/164 (15%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
NT++ N E R+ EA ++++S V GL+PD +SYN LI ++D +
Sbjct: 613 FNTVLCNLCKEG-----RVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKL 667
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ + S G P+I +Y TLL G+ A + + + EM + T+
Sbjct: 668 LDGM-------VSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLR-KGVTPGVETYN 719
Query: 134 AMVDALLYSGS-----------IKVVGLYALCIFGEIVKRVCSN 166
+++ L SG IK L+++C + I+ C N
Sbjct: 720 TILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKN 763
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 44/166 (26%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTM 71
K + I N +I+ A R+DEA ++L+ V GL+P+ +SYN L+ K ++D
Sbjct: 642 KPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYC 701
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMG------FRHAKDL-------QSLLEI--- 115
F E L+ G P + TY T+L G F A++L + L I
Sbjct: 702 LFREMLRK--------GVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTY 753
Query: 116 ------------------VFEMKSCCNLILDRSTFTAMVDALLYSG 143
+F+ +L LD TF M+D L G
Sbjct: 754 SIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGG 799
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ + N VI ++D+AY + +E G+ PD ++YN +I K +++D +
Sbjct: 192 DVVSYNIVINGFFNEGQVDKAYSLF--LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQ 249
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ + G K P+ TY T++ G A+++ + E VF+ + T+ +
Sbjct: 250 QMVEKGVK-------PNNVTYNTIIDGLCKAQEV-DMAEGVFQKMVDKGVKPSNVTYNTI 301
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+D L + ++ A +F +++ R G+ P Y +++ L D +
Sbjct: 302 IDGLCKAQAVD----RAEGVFQQMIDR-----GVKPDHVTYNTIIDGLCKAQAIDKAEGV 352
Query: 196 YRRM 199
+++M
Sbjct: 353 FQQM 356
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 88/200 (44%), Gaps = 19/200 (9%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILIS 59
F ++ + W+++ IV+N +++ + +R+ EA +L + E G +SYN L+
Sbjct: 104 FAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLK 163
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ + + D GQ S PD+ +Y ++ GF + + + EM
Sbjct: 164 GLCDRRRAEEARELLHMMVD-GQDSSC---SPDVVSYNIVINGFFNEGQVDKAYSLFLEM 219
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
+ D T+ ++D L + + A +F ++V++ G+ P Y ++
Sbjct: 220 ----GVSPDVVTYNTIIDGLCKAQEVD----RAEDVFQQMVEK-----GVKPNNVTYNTI 266
Query: 180 MHELAARVDYDIVKSPYRRM 199
+ L + D+ + +++M
Sbjct: 267 IDGLCKAQEVDMAEGVFQKM 286
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+ ++T NA++ EA ++DEA++I E + +G D +SYN LIS C KKLD
Sbjct: 501 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 560
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F +++ G K PD +TY+ L+ G + ++ ++ + K ++ D T
Sbjct: 561 MFLDEMVKRGLK-------PDNYTYSILICGLFNMNKVEEAIQFWDDCKR-NGMLPDVYT 612
Query: 132 FTAMVDA 138
++ M+D
Sbjct: 613 YSVMIDG 619
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACI 62
+ EI+ R ++ + N +I +++DEA+ L E V++GL+PD+ +Y+ILI
Sbjct: 528 QKEILGR-GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLF 586
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++ + F + K N G PD++TY+ ++ G A+ + E EM S
Sbjct: 587 NMNKVEEAIQFWDDCKRN-------GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMS 638
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N + N VI+ R DEA+ E VE+G+EP ++Y+IL+ + K++ D
Sbjct: 294 NVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVL 353
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E K GF P++ Y L+ F A L +EI M S L L ST+
Sbjct: 354 KEMTKK--------GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS-KGLSLTSSTYN 404
Query: 134 AMVDALLYSG 143
++ +G
Sbjct: 405 TLIKGYCKNG 414
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+V N +I A + R+ A ++ E ++ KG+ P+S +Y LI +++
Sbjct: 644 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 703
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G P++F Y L+ G+ + + ++ EM S N+ ++ T+T
Sbjct: 704 EEMRME-------GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS-KNVHPNKITYTV 755
Query: 135 MVDALLYSGSI 145
M+ G++
Sbjct: 756 MIGGYARDGNV 766
>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Glycine max]
Length = 529
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 28/149 (18%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL 67
V R+ W++ V++ ++ + ++ EA +L+ +EKG ++YN LI+
Sbjct: 352 VVRKGWRVGGAVVSTIVHWLCKEGKVVEARGVLDELEKGEVASLMTYNTLIAG------- 404
Query: 68 DVTMPFNEQLKDNGQKCSSG---------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ + GQ C +G G P+ FTY L+ GF D++ + ++ E
Sbjct: 405 ---------MCERGQLCEAGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDVKEAIRVLEE 455
Query: 119 M-KSCCNLILDRSTFTAMVDALLYSGSIK 146
M +S C + ++STF+ +VD + SG K
Sbjct: 456 MVESGC--LPNKSTFSILVDGISLSGGKK 482
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 9/102 (8%)
Query: 20 MNAVIEASREAQRIDEAYQILES-VEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+NA++ A + +R A+ + +S EK L P+ +S NIL+ A K ++DV + +++
Sbjct: 153 LNALLNALVQNKRHRLAHSVFKSSTEKFRLVPNVVSCNILLKALCKRNEVDVAVRVLDEM 212
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G P++ +Y+T+L GF D++S + + E+
Sbjct: 213 -------SLMGLVPNVVSYSTVLGGFVFKGDMESAMRVFGEI 247
>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
Length = 933
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
++ LN + +I+A +A +DEA Q+L E EK + P+ ++++ +I+ +K LD
Sbjct: 373 DNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDK 432
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ +K+ G +P++ TY TL+ GF + + LE+ +M C + +++
Sbjct: 433 ATEYKRMMKERG-------INPNVVTYGTLIDGFFKFQGQDAALEVYHDML-CEGVEVNK 484
Query: 130 STFTAMVDALLYSGSIK 146
++V+ L +G I+
Sbjct: 485 FIVDSLVNGLRQNGKIE 501
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I N ++ +++A Y + E V G P SL++ ++ AC ++++LDV +
Sbjct: 621 KPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILD 680
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
+E + + G H DI Y TLL
Sbjct: 681 IHEWMMN-------AGLHADITVYNTLL 701
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK-TKKLDVTMPF 73
N N ++ RI EA +L +EK GLEP++L+Y+IL++ K + K++ +
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLY 822
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E + GF P + TY L+ F A + E+ +M+
Sbjct: 823 CEMVGK--------GFVPKVSTYNALISDFTKAGMMTQAKELFKDMQ 861
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+ ++T NA++ EA ++DEA++I E + +G D +SYN LIS C KKLD
Sbjct: 514 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 573
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F +++ G K PD +TY+ L+ G + ++ ++ + K ++ D T
Sbjct: 574 MFLDEMVKRGLK-------PDNYTYSILICGLFNMNKVEEAIQFWDDCKR-NGMLPDVYT 625
Query: 132 FTAMVDA 138
++ M+D
Sbjct: 626 YSVMIDG 632
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACI 62
+ EI+ R ++ + N +I +++DEA+ L E V++GL+PD+ +Y+ILI
Sbjct: 541 QKEILGR-GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLF 599
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++ + F + K N G PD++TY+ ++ G A+ + E EM S
Sbjct: 600 NMNKVEEAIQFWDDCKRN-------GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMS 651
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N + N VI+ R DEA+ E VE+G+EP ++Y+IL+ + K++ D
Sbjct: 307 NVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVL 366
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E K GF P++ Y L+ F A L +EI M S L L ST+
Sbjct: 367 KEMTKK--------GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS-KGLSLTSSTYN 417
Query: 134 AMVDALLYSG 143
++ +G
Sbjct: 418 TLIKGYCKNG 427
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+V N +I A + R+ A ++ E ++ KG+ P+S +Y LI +++
Sbjct: 657 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 716
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G P++F Y L+ G+ + + ++ EM S N+ ++ T+T
Sbjct: 717 EEMRME-------GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS-KNVHPNKITYTV 768
Query: 135 MVDALLYSGSI 145
M+ G++
Sbjct: 769 MIGGYARDGNV 779
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
A+I+ RI++A + E + +G++P+++ + ILI A K + + + ++++
Sbjct: 190 GALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRE 249
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
G + PD TY ++ G A+DL+S IV EM+S L D T+T ++D
Sbjct: 250 RGVR-------PDAVTYNAIVNGLCRARDLKSASGIVVEMRS-AGLRPDTVTYTTLIDG 300
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA++ A+ + A I+ E GL PD+++Y LI K ++LD+ M
Sbjct: 255 DAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK 314
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + + G D TY L+ G A ++ EM L D +T+T
Sbjct: 315 QNM-------VAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMME-AGLEPDNTTYTM 366
Query: 135 MVDALLYSGSIKV 147
++DA G +K
Sbjct: 367 VIDAFCRKGDVKT 379
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
E L+ + A+I +A R +A ++L E +E GLEPD+ +Y ++I A + +
Sbjct: 320 EGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKT 379
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKS----- 121
+ +++++ G+K P + TY ++ GF K+ LL + +
Sbjct: 380 GLRLLKEMQNKGRK-------PGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDI 432
Query: 122 CCNLILD----RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
N++LD T + + G++ +G+Y I GEIVK+
Sbjct: 433 TYNILLDGHCKHGKVTDIEELKSAKGTVPDLGVYT-SIVGEIVKK 476
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 20/186 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
E+ + L+ + N +I+ R+ EA Q+ ES + K PD +YN+LI+ C K+
Sbjct: 255 ELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALC-KS 313
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+L+ + Q+ GG D+FTY+ L+ F A LE+ + M+
Sbjct: 314 KQLEEALTLF-------QEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQK-AG 365
Query: 125 LILDRSTFTAMVDALLYSGSIKVV----------GLYALCIFGEIVKRVCSNPGLWPKPH 174
+ D + ++ L G + G+ C IV V S+ G + K +
Sbjct: 366 CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAY 425
Query: 175 LYVSMM 180
+ MM
Sbjct: 426 SFFGMM 431
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+V N +I + ++DEA ++LE + KG+ PD +YNI+I + + F
Sbjct: 369 DTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFF 428
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K PD+ TY TLL G + + ++ EM++ + D +TF
Sbjct: 429 GMMKRRKHS-------PDVVTYNTLLNGLKKLRRTDEACDLFDEMQA-NKCMPDLTTFGT 480
Query: 135 MVDALLYSGSIK 146
++D L +G ++
Sbjct: 481 LIDTLAKAGRME 492
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I+ + R +A ++L+ + E+G+ PD YN LI K K++D F
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
++ +NG K P+ FTY + G+ A + S + V EM+ C
Sbjct: 511 VEMVENGLK-------PNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 38/173 (21%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTM 71
K T++MN + + ++D+A +I + KG+ PD SY +LI+ K + +
Sbjct: 593 KTYTVLMNGLFKN----DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 72 PFNEQLKDN------------GQKCSSG---------------GFHPDIFTYATLLMGFR 104
F+E +++ G C SG G HP+ TY T++ G+
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157
+ DL + EMK L+ D +T +VD ++ A+ IFG
Sbjct: 709 KSGDLAEAFRLFDEMK-LKGLVPDSFVYTTLVDGCCRLNDVE----RAITIFG 756
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I + +++ EA S V++G+ D+ +Y +L++ K K+D
Sbjct: 556 NKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF 615
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ G PD+F+Y L+ GF ++Q I EM
Sbjct: 616 REMRGKG-------IAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T +N +++A + Q I+ A+ +L+ + + S S+NILI+ K + + E
Sbjct: 280 DTAALNKLLDALVKGQSIEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVME 339
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ K++ GF PD+FTY + + H KD + + E++ EM+
Sbjct: 340 ERKEH-------GFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMR 377
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L++ N +I + + ++A +++E E G EPD +YN I + K
Sbjct: 313 LSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEV 372
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+++ NG C P+ TY LL+G+ A L LE MK ++ D ++
Sbjct: 373 LEEMRGNG--CP-----PNAVTYTILLLGYGKAGQLSKALEEYERMKK-DGIVPDTPFYS 424
Query: 134 AMVDALLYSGSIK 146
+++ L +G +K
Sbjct: 425 SLMYILGKAGRLK 437
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
EE E + ++ +T ++++ +A R+ +A ++ + + K G+ D ++YN +IS
Sbjct: 405 LEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMIST 464
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD---LQSLLEIVF 117
K + + +++++ K PD+ TY LL K L+ LL+ +F
Sbjct: 465 ACAHSKEETALRLLKEMEETSCK-------PDLQTYHPLLKMCCKKKRMKVLKFLLDHMF 517
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+ C DR T+T +V +L SG + + A F E+V +
Sbjct: 518 KHDLCP----DRGTYTLLVQSLSNSGKL----VEACTFFEEMVSK 554
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N++I +A+R EAY +LE V G PD +Y LI+ K+KK D + EQ
Sbjct: 55 VTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQ 114
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
L + GF PD+ TY+ L+ G L+ +++ M + + + T+ +++
Sbjct: 115 L-------VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 167
Query: 137 DALLYSGSI 145
G +
Sbjct: 168 SGFCRMGKM 176
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILI 58
+FE+ +V R ++ + + + +I+ + R+ EA + + K P++++YN LI
Sbjct: 111 VFEQ--LVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 167
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
S + K+D M E++ + G PD+ TY TL+ GF L +++ +
Sbjct: 168 SGFCRMGKMDEAMNLLERMAETGSS-------PDVVTYTTLMNGFCKLARLDDAYDLLNQ 220
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
M L + TFT+++D L + A+ I GE+ ++ CS
Sbjct: 221 MTR-KGLTPNVVTFTSLMDGLCRENRLSD----AVHILGEMRRKSCS 262
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108
P +++YN LIS K ++ E++ G PDIFTY TL+ GF +K
Sbjct: 52 PTAVTYNSLISGLCKAERASEAYDLLEEM-------VYSGCIPDIFTYTTLITGFCKSKK 104
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
L VFE D T++ ++D L G +K A+ +FG ++K
Sbjct: 105 SDDALR-VFEQLVARGFRPDVVTYSCLIDGLCKEGRLK----EAIDLFGRMIK 152
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 29/136 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N++I ++DEA +LE + E G PD ++Y L++ K +LD
Sbjct: 159 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 218
Query: 75 EQLKDNG-----------------QKCSSGGFH-----------PDIFTYATLLMGFRHA 106
Q+ G + S H P ++TY T+L G+
Sbjct: 219 NQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRV 278
Query: 107 KDLQSLLEIVFEMKSC 122
L+ + + E C
Sbjct: 279 NQLEEARKFMLEEMDC 294
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
A+I+ RI++A + E + +G++P+++ + ILI A K + + + ++++
Sbjct: 314 GALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRE 373
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
G + PD TY ++ G A+DL+S IV EM+S L D T+T ++D
Sbjct: 374 RGVR-------PDAVTYNAIVNGLCRARDLKSASGIVVEMRS-AGLRPDTVTYTTLIDG 424
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA++ A+ + A I+ E GL PD+++Y LI K ++LD+ M
Sbjct: 379 DAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK 438
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + + G D TY L+ G A ++ EM L D +T+T
Sbjct: 439 QNM-------VAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMME-AGLEPDNTTYTM 490
Query: 135 MVDALLYSGSIKV 147
++DA G +K
Sbjct: 491 VIDAFCRKGDVKT 503
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
E L+ + A+I +A R +A ++L E +E GLEPD+ +Y ++I A + +
Sbjct: 444 EGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKT 503
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKS----- 121
+ +++++ G+K P + TY ++ GF K+ LL + +
Sbjct: 504 GLRLLKEMQNKGRK-------PGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDI 556
Query: 122 CCNLILD----RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
N++LD T + + G++ +G+Y I GEIVK+
Sbjct: 557 TYNILLDGHCKHGKVTDIEELKSAKGTVPDLGVYT-SIVGEIVKK 600
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 22/174 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ A + ++I +A + +E V +G PD +SYN L++A + ++DV +
Sbjct: 340 NSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELL 399
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QLKD G CS P + +Y T++ G A + LE++ EM S L D T++
Sbjct: 400 HQLKDKG--CS-----PVLISYNTVIDGLTKAGKTKEALELLDEMTS-KGLQPDIITYST 451
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVC--SNPGLWPKPHLYVSMMHELAAR 186
+ L I+ E V+ C + G+ P LY +++ L R
Sbjct: 452 IASGLCREDRIE-----------EAVRTFCKVQDMGIRPTAALYNAILLGLCKR 494
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ A ++LE + + G P+SLSYN L+ A K KK+ M F
Sbjct: 305 NVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFV 364
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRSTFT 133
E + S G +PDI +Y TLL ++ +E++ ++K C+ +L ++
Sbjct: 365 ELM-------VSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVL--ISYN 415
Query: 134 AMVDALLYSGSIK 146
++D L +G K
Sbjct: 416 TVIDGLTKAGKTK 428
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + EA ++L E KGL+PD ++Y+ + S + +++ + +
Sbjct: 412 ISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCK 471
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++D G P Y +L+G ++ + +++ M S + + ST+T +V
Sbjct: 472 VQDMG-------IRPTAALYNAILLGLCKRRETHNAIDLFAYMISS-GCMPNESTYTILV 523
Query: 137 DALLYSGSIK-VVGLYA-LCIFGEIVKRV 163
+ L Y G +K L+A LC G + K++
Sbjct: 524 EGLAYEGLVKEARELFAQLCSRGVVNKKL 552
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 21/147 (14%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILIS 59
F ++ + W++N IV+N +++ +A+R+ EA IL E G PD +SYN L+
Sbjct: 114 FATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLK 173
Query: 60 ACIKTKKLDVTMPFNEQLKDN-GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K+ + + + D+ G+ C P++ +YAT++ GF + + E
Sbjct: 174 GFCNEKRAEEALELLHMMADSQGRSCP-----PNVVSYATVINGFFTEGQVDKAYNLFLE 228
Query: 119 MKSCCNLILDRS------TFTAMVDAL 139
M +DR T+T ++D L
Sbjct: 229 M-------MDRGIQPNVVTYTTVIDGL 248
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 40/249 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + VI ++D+AY + LE +++G++P+ ++Y +I K + +D
Sbjct: 202 NVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ D G K PD TY L+ G+ + ++ ++ EM S L D T+ +
Sbjct: 262 QQMIDKGVK-------PDNDTYNCLIHGYLSIGKWKEVVRMLEEM-SAHGLKPDCYTYGS 313
Query: 135 MV----------------DALLYSGSIKVVGLYALCIFGEIVKRVCS----------NPG 168
++ D+++ G V +Y + I G K S G
Sbjct: 314 LLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG 373
Query: 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ 228
L P H++ + A + D + +M +SP+V L++A G+
Sbjct: 374 LSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQG---LSPDVVNFGA--LIDALCKLGR 428
Query: 229 VDLALDKLS 237
VD A+ K +
Sbjct: 429 VDDAVLKFN 437
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQ 76
+ N + A + IDEA I + ++GL PD +++ LI A K ++ D + FN+
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + G P+IF + +L+ G + E FEM
Sbjct: 440 MNE--------GVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEM 474
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
N I + + W N + N ++ + +DEA+++ +S+ K + + ++NI+I A K
Sbjct: 613 NMITSGKQW--NIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFK 670
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ + NE SS G PD+FTY + L+ ++ M+
Sbjct: 671 SGR-------NEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLY 151
R A+V LL+ G I G Y
Sbjct: 724 TTPNSR-MLNALVRRLLHRGDITRAGAY 750
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQLKDNGQKCSSGGF 89
RIDEA + L+ + GL+PD +YN L+ + ++D F E L++ G
Sbjct: 533 RIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRN--------GI 584
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
P + TY+T+L G + E+ M
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNM 614
>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 737
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 2 FEENEIVNREH---WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNIL 57
E E++N W N I + V+ R ++ EA ++ E + KG P + N+L
Sbjct: 434 LEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLL 493
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
I + +K++ F E+ C + G + + T++ GF + ++ + L ++
Sbjct: 494 IKSLCLEQKMNEAKKFMEE-------CLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLD 546
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+M N D TFTA++DAL G I+ +Y + +++K+ GL P P Y
Sbjct: 547 DM-YLNNKHPDAVTFTAIIDALGKKGRIEEATVYTM----KMLKK-----GLDPTPVTYR 596
Query: 178 SMMHE 182
+++H+
Sbjct: 597 AVIHQ 601
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
V+ + A ++ A Q+L ++K G+EP+ L N I + KL+ + F E+++
Sbjct: 177 VMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQ--- 233
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDAL 139
G P++ TY L+ G+ ++ +E++ EM K C D+ ++ ++ L
Sbjct: 234 ----LVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGC---PPDKVSYYTVMGFL 286
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
IK V +++++ + L+P Y +++H L+
Sbjct: 287 CQDKRIKEV--------RNLMEKMVKDNKLFPDQVTYNTLVHMLS 323
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 31 QRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
+RI E ++E + K L PD ++YN L+ K D + F L++ ++ G
Sbjct: 290 KRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEF---LRETEER----G 342
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIK 146
F D Y+ ++ F + EIV EM K C D T+TA+V+ L G ++
Sbjct: 343 FQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSP---DVVTYTAVVNGLCKVGKVE 399
>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 789
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 30/212 (14%)
Query: 2 FEENEIVN--REHW-KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNIL 57
E E++N EHW N I V+ R ++ EA + E VEKG P + N+L
Sbjct: 494 LEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLL 553
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
I + + +K+ + E+ C + G ++ + T++ GF D+++ L ++
Sbjct: 554 IQSLCQNQKVVEAKKYLEE-------CLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLE 606
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+M N D T+TA+ DAL G + E++ ++ S GL P P +
Sbjct: 607 DM-YLSNKHPDAVTYTALFDALGKKGRLDEA--------AELIVKMLSK-GLDPTPVTFR 656
Query: 178 SMMHELA--ARV-------DYDIVKSPYRRMW 200
S++H RV D + + P+R ++
Sbjct: 657 SVIHRYCQWGRVDDMLNLLDRMVKRKPFRTIY 688
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 31 QRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
++I++ ++E + + L PD ++YN LI K D + F ++ +D G
Sbjct: 350 KKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDK-------G 402
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDALLYSGSI 145
FH D Y+ ++ F + +V +M S CN D T+TA+VD G I
Sbjct: 403 FHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCN--PDVVTYTAIVDGFCRLGRI 458
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
++ R +L+ V+ + A ++ A ++L ++K G+EP+ N I +K
Sbjct: 220 RLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKG 279
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
KL+ + F E+++ G K PDI TY +L+ G+ ++ LE++ + S
Sbjct: 280 CKLEKALRFLERMQVTGIK-------PDIVTYNSLIKGYCDLNRIEDALELIAGLPS 329
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I+ + ++I+EA +I + +E +GL +S++YN LI K++++
Sbjct: 348 NVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLM 407
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFT 133
+Q+ G K PD FTY ++L F D+Q +IV M S C D T+
Sbjct: 408 DQMIMEGLK-------PDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCE--PDIVTYG 458
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
++ L +G ++V + R G+ PH Y ++ L R
Sbjct: 459 TLIGGLCKAGRVEVASR---------LLRSIQLKGMVLTPHAYNPVIQALFKR 502
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
VE GL D+L YN L++ + KL + + + S G PD+ T+ L+
Sbjct: 150 VEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTM-------VSKGIKPDVSTFNILIKA 202
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
A ++ + ++ EM S L+ D TFT ++ + G++
Sbjct: 203 LCKAHQIRPAILVMEEMSS-YGLVPDEKTFTTLMQGFIEEGNM 244
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E KG +PD +YN+LI + KL + +++ +G C+ ++ TY TL+
Sbjct: 304 EMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISG--CAR-----NVITYNTLI 356
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
GF K ++ EI F+ L + T+ ++D L S ++
Sbjct: 357 DGFCKNKKIEEAEEI-FDQMEIQGLSRNSVTYNTLIDGLCKSRRVQ 401
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVT 70
+ K N + N+++ +A R++ A ++ E V +GL PD +SYN L+S K L +
Sbjct: 76 NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 135
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+ ++ G PD+ T+ +L+ A +L+ + +V +M+ L ++
Sbjct: 136 LAVFSEMTQR-------GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE-RGLRMNEV 187
Query: 131 TFTAMVDALLYSG 143
TFTA++D G
Sbjct: 188 TFTALIDGFCKKG 200
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I + R+D A +++ +E K ++PD ++Y+ +IS K LD N
Sbjct: 220 SVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 279
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QK G PD TY++L+ G K L E+ FE + D T+T
Sbjct: 280 -------QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL-FENMLQLGVQPDEFTYTT 331
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++D G+++ AL + E++++ G+ P Y +++ L+
Sbjct: 332 LIDGHCKEGNVE----KALSLHDEMIRK-----GVLPDVVTYSVLINGLS 372
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
++N + A+I+ + +D+A +E + K G++P + YN LI+ K ++D+
Sbjct: 183 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE 242
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++ K PD+ TY+T++ G+ +L S ++ +M ++ D T+
Sbjct: 243 LIREMEAKRVK-------PDVVTYSTIISGYCKVGNLDSAFQLNQKMLK-KGVLPDAITY 294
Query: 133 TAMVDAL 139
++++ L
Sbjct: 295 SSLIRGL 301
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V G+ P+ +YNIL+ A +L+ + ++ G C+ P+ TY TL+
Sbjct: 2 VRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMR--GAGCA-----PNAVTYNTLVAA 54
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
F A +L +V M+ N + TF +MV+ L +G ++ A +F E+V+
Sbjct: 55 FCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRME----GARKVFDEMVRE 110
Query: 163 VCSNPGLWPKPHLYVSMM 180
GL P Y +++
Sbjct: 111 -----GLAPDVVSYNTLL 123
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
F+ N+ + ++ + I +++I E +R+++A ++ E+ ++ G++PD +Y LI
Sbjct: 276 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 335
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K ++ + ++++ G PD+ TY+ L+ G + + ++F++
Sbjct: 336 HCKEGNVEKALSLHDEMIRKG-------VLPDVVTYSVLINGLSKSARTKEAHRLLFKL 387
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 19/177 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
NE+V R H + I + VI ++ A Q+L +E KG +P+ ++Y +I + K
Sbjct: 186 NEMVRRGHQP-DVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCK 244
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
++ M ++ D G PD+ TY+T+L GF L I+F
Sbjct: 245 DTLVNDAMDLLSEMVDRG-------IPPDVVTYSTILHGFCSLGHLNE-ATILFNEMVGR 296
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
N++ + TFT +VD L G + A C+F + K+ G P + Y ++M
Sbjct: 297 NVMPNTVTFTILVDGLCKEGMVS----EARCVFEAMTKK-----GAEPNAYTYNALM 344
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
E + ++ + N NA+++ ++DEA ++L+ V+KG P SYNILI+ K
Sbjct: 326 EAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKR 385
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
++LD + K + S PD TY+TL+ G Q L + EM S
Sbjct: 386 RRLD-------EAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCS-SG 437
Query: 125 LILDRSTFTAMVDALLYSGSI 145
L+ D T++ ++D L G +
Sbjct: 438 LLPDLMTYSTLLDGLCKHGHL 458
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + +R+DEA +L E EK L PD+++Y+ L+ + + P E L
Sbjct: 376 NILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGR-----P-QEALNL 429
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ CSSG PD+ TY+TLL G L L+++ M+ + D + +++ +
Sbjct: 430 FKEMCSSG-LLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQE-SKIEPDIVLYNILIEGM 487
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
+G ++V E+ ++ ++ G+ P Y M+ L D +R+M
Sbjct: 488 FIAGKLEVA--------KELFSKLFAD-GIQPTIRTYTIMIKGLLKEGLSDEAYELFRKM 538
Query: 200 WPD 202
D
Sbjct: 539 EDD 541
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 30/134 (22%)
Query: 33 IDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG---------- 81
+DEA ++L+S+ E +EPD + YNILI KL+V +L +G
Sbjct: 458 LDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTI 517
Query: 82 ------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+K GF P+ +Y ++ GF +D + + ++ EM
Sbjct: 518 MIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVG-K 576
Query: 124 NLILDRSTFTAMVD 137
D STF ++D
Sbjct: 577 RFSADSSTFQMLLD 590
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I A+I+ ++R+D A + + G++PD + YN L++ K ++
Sbjct: 327 NGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++K G K PD TY TL+ G+ DL+S +EI M ++LD FTA
Sbjct: 387 DEMKMVGMK-------PDKITYTTLIDGYCKEGDLESAMEIRKGMNE-EGVVLDNVAFTA 438
Query: 135 MVDALLYSGSIK 146
++ G ++
Sbjct: 439 LISGFCRDGRVR 450
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + I +A I + K GL P ++S+N LI+ K++ LD + +++
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE 286
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
N +PD+FTY+ L+ G L ++ EM+ L + TFTA++D
Sbjct: 287 N-------RIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQ-RGLRPNGITFTALIDG 337
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKK 66
+N E L+ + A+I R+ +A + L E VE G++PD +Y ++I K
Sbjct: 424 MNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGN 483
Query: 67 LDVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTYAT 98
+ + ++++ NG K C G G PD TY
Sbjct: 484 VKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNI 543
Query: 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
LL G H K+ ++ E + ++++ LI+D + +T++V Y+ S+K
Sbjct: 544 LLEG--HCKNGKA--EDLLKLRNEKGLIVDYAYYTSLVSE--YNKSLK 585
>gi|298710948|emb|CBJ32258.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 358
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 73/138 (52%), Gaps = 7/138 (5%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDV 69
E + N + A ++A + + + A +L+ + + G+EPD + YN I+AC ++ + +
Sbjct: 204 EGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPDRICYNAAINACAQSGEWET 263
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ ++++ + +G PD+FT+ +++ G A + + LL ++ EM+ + D
Sbjct: 264 ALSLADEMRRSVPVLGTGA-GPDVFTFNSIMHGMASAGECERLLVLLAEMREEYEVSPDV 322
Query: 130 STF-TAMV----DALLYS 142
++ TAM ALLY+
Sbjct: 323 VSYNTAMAACNEPALLYA 340
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + V+ A+++D+A+++LE + K G PD ++YNIL+ KT +D
Sbjct: 288 NGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELF 347
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
+ DNG C+ PDI +Y+ +L G D + L + + E K L+ D T
Sbjct: 348 STMVDNG--CA-----PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK----LVPDVVT 396
Query: 132 FTAMVDALLYSGSI 145
F ++D L +G +
Sbjct: 397 FNILMDGLCKAGKL 410
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N V+++ + ++ + Y++ E ++ G+ PD + YNILI K ++D
Sbjct: 7 NRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLY 66
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++ S G P I+TY +LL F ++ +E+ F+ + D T++
Sbjct: 67 EEM-------VSVGLEPSIYTYNSLLNAFCKETKMKEAMEL-FKTMAEKGFEPDVVTYST 118
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
++ L +G KV + +F ++++R CS
Sbjct: 119 IISGLCKTG--KVTEALEM-LFHKMIERGCS 146
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ NA+I + + I+ AY++LE + KG PD+++YN ++S + K+ F
Sbjct: 148 NTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFF 207
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
+ + S G+ PD+ Y LL
Sbjct: 208 DSM-------PSRGYSPDVVAYNGLL 226
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N ++ ++ EA Q +S+ +G PD ++YN L+ A K K D M
Sbjct: 183 DNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL- 241
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
KD K G+ PD TY ++L+G ++ E+ +M
Sbjct: 242 --FKDVIAK----GYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 280
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 40/209 (19%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD--VTMPFNEQL 77
N+++ A + ++ EA ++ +++ EKG EPD ++Y+ +IS KT K+ + M F++ +
Sbjct: 82 NSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMI 141
Query: 78 KD-------------NG--------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
+ NG ++ +S G+ PD TY T+L G +
Sbjct: 142 ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVS 201
Query: 111 SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170
+ M S D + ++DAL G A+ +F +++ + G
Sbjct: 202 EAKQFFDSMPS-RGYSPDVVAYNGLLDALYKEGKTD----EAMKLFKDVIAK-----GYM 251
Query: 171 PKPHLYVSMMHELAARVDYDIVKSPYRRM 199
P Y S++ LA + + D + +++M
Sbjct: 252 PDTVTYNSILLGLARKSNMDEAEEMFKKM 280
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 4 ENEIVNREHWKLNTIVMNA----------VIEASREAQRIDEAYQILES-VEKGLEPDSL 52
+ +V++ H +T+V N V+ + ++ +A + + +E+ L PD +
Sbjct: 336 KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV 395
Query: 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
++NIL+ K KLD +Q+ CS G PD Y TL+ G R
Sbjct: 396 TFNILMDGLCKAGKLDEAKDLLDQM-----TCS--GCAPDYVAYNTLMNGLR 440
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N+++ +DEA ++ + V G P+ +Y+I++S + KK+D
Sbjct: 253 DTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVL 312
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E++ S G PD+ TY LL G
Sbjct: 313 EEM-------SKIGAVPDVVTYNILLDGL 334
>gi|238478946|ref|NP_001154441.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|49660083|gb|AAT68332.1| hypothetical protein At1g63630 [Arabidopsis thaliana]
gi|50058961|gb|AAT69225.1| hypothetical protein At1g63630 [Arabidopsis thaliana]
gi|332196000|gb|AEE34121.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
TI N++I+ + R+D+A ++L+S+ KG PD ++++ LI+ K K++D M
Sbjct: 9 TTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIF 68
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ G + TY TL+ GF DL + +++ EM S C + D TF
Sbjct: 69 CEMHRRG-------IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMIS-CGVAPDYITFHC 120
Query: 135 MVDAL 139
M+ L
Sbjct: 121 MLAGL 125
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108
P +++YN +I K ++D + + +S G PD+ T++TL+ G+ AK
Sbjct: 8 PTTITYNSMIDGFCKQDRVDDAKRMLDSM-------ASKGCSPDVVTFSTLINGYCKAKR 60
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+ + +EI EM ++ + T+T ++ G +
Sbjct: 61 VDNGMEIFCEMHR-RGIVANTVTYTTLIHGFCQVGDL 96
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 40/223 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+++ +DEA ++ ++ V KG P+ SYNILI+ + +++D M
Sbjct: 742 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 801
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ+ S G D TY TL+ G H LQ + + EM + I D T+
Sbjct: 802 EQM-------SLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVA-SGQIPDLVTYRI 853
Query: 135 MVDALLYS--------------GS-------IKVVGLYALCIFGEI--VKRVCSN---PG 168
++D L + GS + + + +C GE+ + + SN G
Sbjct: 854 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG 913
Query: 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPDSTGT 206
L P Y M+H L R D +R+M W +ST +
Sbjct: 914 LQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTSS 956
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+++ +D A ++ ++ V K + +SYN LI+ K + +D M
Sbjct: 254 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 313
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E++ S P+ TY TL+ G H LQ + + EM
Sbjct: 314 EEM-------SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM 351
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I + Q +D+A + E + + L P++++YN LI +L +
Sbjct: 289 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 348
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATL---LMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
++ GQ PD+ TY TL L RH +LL+ + N D
Sbjct: 349 HEMVARGQI-------PDLVTYRTLSDYLCKNRHLDKAMALLKAI----EGSNWDPDIQI 397
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+T ++D + +G ++ A +F + S+ GL P Y M+H L +
Sbjct: 398 YTTILDGMCRAGELE----DARDLFSNL-----SSKGLQPNVWTYNIMIHGLCKQ 443
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDN 80
VI + R+D A+ L + K G +PD+ ++ LI C++ K + F++ + +
Sbjct: 86 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE- 144
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
GF P++ TY TL+ G + + I EM
Sbjct: 145 -------GFQPNVVTYGTLINGLCKDRQVTEAFNIFSEM 176
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
NE+V+ + + +N V++A + + EA+ +++ + +G+EP+ ++YN L+
Sbjct: 209 NEMVDSKIMP-DVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCL 267
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
++DV + + + + C + ++ +Y TL+ G+ + + + + FE S
Sbjct: 268 RNEVDVAVKVFDTMVH--KDCVA-----NVISYNTLINGYCKIQSVDKAMYL-FEEMSRQ 319
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
L + T+ ++ L + G ++ A+ +F E+V R
Sbjct: 320 ELTPNTVTYNTLIHGLCHVGRLQ----DAISLFHEMVAR 354
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
+N +I + +R+ A+ +L + K G +PD ++Y L++ K
Sbjct: 619 LNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKM-------------- 664
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ G PDIFTY +L+ + + + + ++ EM + ++ + F+ +VDA
Sbjct: 665 ------ITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVN-SKIMPNVVVFSTVVDA 717
Query: 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
L G I + A + ++KR G+ P Y ++M R + D
Sbjct: 718 LCKEGMIAI----AHDVVDMMIKR-----GVEPDVVTYTALMDGHCLRSEMD 760
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N+++ +A R++ A ++ E V +GL PD +SYN L+S K L ++
Sbjct: 220 KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 279
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ G PD+ T+ +L+ A +L+ + +V +M+ L ++ TF
Sbjct: 280 VFSEMTQR-------GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE-RGLRMNEVTF 331
Query: 133 TAMVDALLYSG 143
TA++D G
Sbjct: 332 TALIDGFCKKG 342
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I + R+D A +++ +E K ++PD ++Y+ +IS K LD N
Sbjct: 362 SVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 421
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QK G PD TY++L+ G K L E+ FE + D T+T
Sbjct: 422 -------QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL-FENMLQLGVQPDEFTYTT 473
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++D G+++ AL + E++++ G+ P Y +++ L+
Sbjct: 474 LIDGHCKEGNVE----KALSLHDEMIRK-----GVLPDVVTYSVLINGLS 514
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
++N + A+I+ + +D+A +E + K G++P + YN LI+ K ++D+
Sbjct: 325 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE 384
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++ K PD+ TY+T++ G+ +L S ++ +M ++ D T+
Sbjct: 385 LIREMEAKRVK-------PDVVTYSTIISGYCKVGNLDSAFQLNQKMLK-KGVLPDAITY 436
Query: 133 TAMVDAL 139
++++ L
Sbjct: 437 SSLIRGL 443
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAV+ A +A + A + L S + G+ P+ +YNIL+ A +L+ + ++
Sbjct: 122 NAVLLALSDAS-LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMR- 179
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G C+ P+ TY TL+ F A +L +V M+ N + TF +MV+ L
Sbjct: 180 -GAGCA-----PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
+G ++ A +F E+V+ GL P
Sbjct: 234 CKAGRME----GARKVFDEMVRE-----GLAP 256
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
F+ N+ + ++ + I +++I E +R+++A ++ E+ ++ G++PD +Y LI
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K ++ + ++++ G PD+ TY+ L+ G + + ++F++
Sbjct: 478 HCKEGNVEKALSLHDEMIRKG-------VLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
F ++ E + +A+I + R+DE + E KGL P+ +++ +LI
Sbjct: 197 FRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDG 256
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K K+D+ + N Q + G PD+ TY L+ G DL+ +V EM
Sbjct: 257 QCKGGKVDLAL-------KNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEM- 308
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIK 146
S L DR TFT ++D G ++
Sbjct: 309 SASGLRPDRITFTTLIDGCCKYGDME 334
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + ++D A + + + +G+ PD ++YN LI+ K L
Sbjct: 246 NGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLV 305
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ S+ G PD T+ TL+ G D++S LEI M + LD FT
Sbjct: 306 NEM-------SASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVE-EGIELDDVAFTV 357
Query: 135 MVDALLYSGSI 145
++ L G +
Sbjct: 358 LISGLCRDGRV 368
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N ++ + + A + + + K GL P +S+N LIS C K ++
Sbjct: 141 NFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRL- 199
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + ++ + C PD+FT++ L+ G L ++F+ L+ + TFT
Sbjct: 200 KGVMESERVC------PDVFTFSALINGLCKEGRLDE-GSLLFDEMCGKGLVPNGVTFTV 252
Query: 135 MVDALLYSGSI 145
++D G +
Sbjct: 253 LIDGQCKGGKV 263
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 31/170 (18%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
TI N++I+ + R+D+A ++L+S+ KG PD ++++ LI+ K K++D M
Sbjct: 160 TITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFC 219
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ G + TY TL+ GF DL + +++ EM S C + D TF M
Sbjct: 220 EMHRRG-------IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMIS-CGVAPDYITFHCM 271
Query: 136 VDALLYSGSIK------------------VVGLYALCI----FGEIVKRV 163
+ L ++ + L++LC FGE+ R+
Sbjct: 272 LAGLCSKKELRKAFAILEDLQKSEVCPRLIFFLFSLCSFILGFGEVCYRI 321
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD------ 68
N + N +I++ + R +A Q+L +EK + PD ++++ LI+A +K +K+
Sbjct: 89 NVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIY 148
Query: 69 ----------VTMPFNEQLK--------DNGQKC----SSGGFHPDIFTYATLLMGFRHA 106
T+ +N + D+ ++ +S G PD+ T++TL+ G+ A
Sbjct: 149 KEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKA 208
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
K + + +EI EM ++ + T+T ++ G +
Sbjct: 209 KRVDNGMEIFCEMHR-RGIVANTVTYTTLIHGFCQVGDL 246
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I+ A+RID+A ++++ + +GL+P++++YN +++ K +
Sbjct: 510 NAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNI------- 562
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ D Q ++ GF D+ TYATL+ G A+ Q+ L+++ M+
Sbjct: 563 SKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMR 608
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 72/143 (50%), Gaps = 10/143 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTK 65
+ RE ++ ++ + I + Q D+A+ ++ + G++ ++ YN L++ +
Sbjct: 116 MRREGHEVGLGLVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGS 175
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
K+ + L+ + SS G PD+ T+ T++ A+ ++ + ++ EM S C++
Sbjct: 176 KIKL-------LESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSS-CDV 227
Query: 126 ILDRSTFTAMVDALLYSGSIKVV 148
D +TFT +++ + GSI+
Sbjct: 228 APDETTFTTLMEGFVEEGSIEAA 250
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 60/233 (25%)
Query: 14 KLNTIVMNAVIEASREAQRI---DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVT 70
+ NT V N ++ E +I + AY + S +G+EPD +++N +I A + ++
Sbjct: 158 QANTEVYNHLLTVLAEGSKIKLLESAYTEMSS--QGIEPDVVTFNTVIDALCRARQARTA 215
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--------C 122
+ E++ SS PD T+ TL+ GF +++ L + M
Sbjct: 216 VLMLEEM-------SSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVT 268
Query: 123 CNLIL--------------------------DRSTFTAMVDALLYSGSIKVVGLYALCIF 156
N+++ DR TF+ V+ L +G + +AL +
Sbjct: 269 VNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVD----HALKVL 324
Query: 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPDST 204
G +++ C P + Y ++++ L + + K +M PD+T
Sbjct: 325 GLMLQEGCE-----PDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTT 372
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T N +I A +++EA + E KGL P+ ++NILI+A K + +
Sbjct: 370 DTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLF 429
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E++K S G PD TY L+ + L L+++ EM+
Sbjct: 430 EEMK-------SSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEME 468
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 38/246 (15%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN ++ N VI ++ EA ++ E++ KG +PD+ +Y+IL+ K ++ +
Sbjct: 308 ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVR 367
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDR 129
+++ GF P++ TY +L F D ++LLE EM S L L+
Sbjct: 368 LLREMEKK-------GFAPNVVTYTIVLHSFCKNGMWDDTRALLE---EM-SAKGLTLNS 416
Query: 130 STFTAMVDALLYSGSI-KVVGLYA----------LCIFGEIVKRVCSNPGLWPKPHLYVS 178
+ M+ AL G + + +GL +C + I+ +C+N + H++ +
Sbjct: 417 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 476
Query: 179 MMHE--LAARVDYDIVKSPYRR--MWPDSTGTISPEVQEEAGHL-------LMEAALNDG 227
++ E +A + Y+ + R W D+ ++ E+ L L++A DG
Sbjct: 477 LLEEGVVANGITYNTIIHALLRDGRWQDAV-RLAKEMILHGCSLDVVSYNGLIKAMCKDG 535
Query: 228 QVDLAL 233
VD +L
Sbjct: 536 NVDRSL 541
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + N +I+A + +D + +LE + EKG++P+++SYNILIS K +++ +
Sbjct: 519 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALEL 578
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLL-----MGFRHA 106
++Q+ + G PDI TY TL+ MG+ HA
Sbjct: 579 SKQMLNQ-------GLAPDIVTYNTLINGLCKMGWMHA 609
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N +I + +R+ +A ++ + + +GL PD ++YN LI+ K + +
Sbjct: 553 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 612
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E+L + HPDI TY L+
Sbjct: 613 LLEKLHNE-------NVHPDIITYNILI 633
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 10 REH--WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
R+H W N I NA++ R+ +A + E ++ G PD ++YN L+ K +
Sbjct: 2 RKHGFWP-NRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 67 LDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
LD + F+ +K GF PD+ TY L+ GF A L I+ M S NL
Sbjct: 61 LDEALKIFDGAVKR--------GFVPDVVTYNALINGFCKADKLDEAQRILQRMVS-ENL 111
Query: 126 ILDRSTFTAMVDALLYSGSI 145
+ D T+ ++V+ L +G +
Sbjct: 112 VPDVVTYNSLVNGLCKNGRV 131
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 27 SREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS 85
+R+ RI EA + ++ +EKG PD ++Y+ LI K KLD ++
Sbjct: 336 ARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAME------- 388
Query: 86 SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDA 138
+ G P+++TY +L+ G + + LE+ M K C + D T+ ++ A
Sbjct: 389 AKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGC---VPDTITYGTIISA 440
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 19/146 (13%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+ + R++EA+++ V+ GLEPD+++Y + I K +++ + LKD
Sbjct: 187 NILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM---LKD 243
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAK--DLQSLLEIVFEMKSCC-NLILDRSTFTAMV 136
+K G PD+ ++ ++ G K D +L E K C N I +F ++
Sbjct: 244 MDEK----GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAI----SFNTLI 295
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKR 162
+G K A+ F E++KR
Sbjct: 296 CGQCRAGKWK----KAMTTFKEMLKR 317
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 16 NTIVMNAVIEA-SREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
N I + +I RE + + EA ++ SV ++G EP+ +YNILI +K +++
Sbjct: 146 NVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFEL 205
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRST 131
L + G PD TY + G A ++ L ++ +M K C + D +
Sbjct: 206 FSGLVKH-------GLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGC---VPDVVS 255
Query: 132 FTAMVDAL 139
A+++ L
Sbjct: 256 HNAVINGL 263
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N+++ +A R++ A ++ E V +GL PD +SYN L+S K L ++
Sbjct: 220 KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 279
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ G PD+ T+ +L+ A +L+ + +V +M+ L ++ TF
Sbjct: 280 VFSEMTQR-------GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE-RGLRMNEVTF 331
Query: 133 TAMVDALLYSG 143
TA++D G
Sbjct: 332 TALIDGFCKKG 342
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I + R+D A +++ +E K ++PD ++Y+ +IS K LD N
Sbjct: 362 SVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 421
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QK G PD TY++L+ G K L E+ FE + D T+T
Sbjct: 422 -------QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL-FENMLQLGVQPDEFTYTT 473
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++D G+++ AL + E++++ G+ P Y +++ L+
Sbjct: 474 LIDGHCKEGNVE----KALSLHDEMIRK-----GVLPDVVTYSVLINGLS 514
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
++N + A+I+ + +D+A +E + K G++P + YN LI+ K ++D+
Sbjct: 324 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAR 383
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ K PD+ TY+T++ G+ +L S ++ +M ++ D T
Sbjct: 384 ELIREMEAKRVK-------PDVVTYSTIISGYCKVGNLDSAFQLNQKMLK-KGVLPDAIT 435
Query: 132 FTAMVDAL 139
+++++ L
Sbjct: 436 YSSLIRGL 443
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAV+ A +A + A + L S + G+ P+ +YNIL+ A +L+ + ++
Sbjct: 122 NAVLLALSDAS-LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMR- 179
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G C+ P+ TY TL+ F A +L +V M+ N + TF +MV+ L
Sbjct: 180 -GAGCA-----PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
+G ++ A +F E+V+ GL P
Sbjct: 234 CKAGRME----GARKVFDEMVRE-----GLAP 256
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
F+ N+ + ++ + I +++I E +R+++A ++ E+ ++ G++PD +Y LI
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K ++ + ++++ G PD+ TY+ L+ G + + ++F++
Sbjct: 478 HCKEGNVEKALSLHDEMIRKG-------VLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E +N++ K N + A+I+A + ++EA + E ++ +G EPD ++Y ++++ K+
Sbjct: 354 ENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKS 413
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
+LD + + E KDN ++ Y++L+ G A + + EM + C
Sbjct: 414 GRLDEAVEYFEFCKDNEVAVNA-------MFYSSLIDGLGKAGRVDEAEKFFEEMVERGC 466
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
D + A++DAL SG ++ AL +F + K C
Sbjct: 467 PQ---DSYCYNALIDALAKSGKME----EALVLFKRMEKEGC 501
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G+EP ++N L++ + + F E + + G PD+ +Y T++ G+
Sbjct: 218 ESGIEPSLYTFNFLLNGLVNSM-------FIESAERVFEVMECGKIGPDVVSYNTMIKGY 270
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
A + + +E +M+ NL D+ T+ ++ A G+ L ++ E+ +R
Sbjct: 271 CKAGNTKKAMEKFTDMEK-RNLEPDKITYLTLIQACYSEGNFDS----CLHLYQEMEER- 324
Query: 164 CSNPGLWPKPHLY 176
GL PH Y
Sbjct: 325 ----GLEIPPHAY 333
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I ++I+ ++ ++D A ++L+ +E+ G +P++ +YN L+ +K KKL M
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 520
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G P++ TY TLL G D + + FEM L D +
Sbjct: 521 TKMQKD-------GIIPNVITYTTLLQGQCDEHDFDNAFRL-FEMMEQNGLKPDEHAYAV 572
Query: 135 MVDALLYSG 143
+ DAL +G
Sbjct: 573 LTDALCKAG 581
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISAC 61
E + R+ L + +I+ +A D A ++E +++G PDS +Y++L+ A
Sbjct: 585 EAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHAL 644
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K K+L+ +P +Q+ G KC+ IF Y L+
Sbjct: 645 CKQKRLNEALPILDQMSLRGIKCT-------IFAYTILI 676
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 19/189 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I + R+++A +I E +EK G PD +YN LI K + N
Sbjct: 322 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLN 381
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K+ GF P + T+ L+ G+ A+ L + +M S LD F
Sbjct: 382 NAVKE--------GFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMS-SKCKLDLQVFGK 432
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++++L+ +K E++ + +N GL P Y S++ DI
Sbjct: 433 LINSLIKKDRLKEA--------KELLNEISAN-GLVPNVITYTSIIDGYCKSGKVDIALE 483
Query: 195 PYRRMWPDS 203
+ M D
Sbjct: 484 VLKMMERDG 492
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISA 60
+ E+N + EH + +A +A R +EAY + V KG+ + Y LI
Sbjct: 557 MMEQNGLKPDEH------AYAVLTDALCKAGRAEEAYSFI--VRKGVALTKVYYTTLIDG 608
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K D E++ D G C+ PD +TY+ LL K L L I+ +M
Sbjct: 609 FSKAGNTDFAATLIERMIDEG--CT-----PDSYTYSVLLHALCKQKRLNEALPILDQM- 660
Query: 121 SCCNLILDRSTFTAMVDALLYSG 143
S + +T ++D +L G
Sbjct: 661 SLRGIKCTIFAYTILIDEMLREG 683
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ +++R+++AY++ ++ D+++YN++++ K+ + E LK+
Sbjct: 164 FNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKAL---EVLKE 220
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++ G +P++ TY T+L GF A ++ E EMK + +D T+T +V
Sbjct: 221 MVER----GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK-RDCEIDVVTYTTVVHGF 275
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+G IK A +F E+++ G+ P Y +M+ L +
Sbjct: 276 GVAGEIK----RARNVFDEMIRE-----GVLPSVATYNAMIQVLCKK 313
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ +++R+++AY++ ++ D+++YN++++ K+ + E LK+
Sbjct: 164 FNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKAL---EVLKE 220
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++ G +P++ TY T+L GF A ++ E EMK + +D T+T +V
Sbjct: 221 MVER----GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK-RDCEIDVVTYTTVVHGF 275
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+G IK A +F E+++ G+ P Y +M+ L +
Sbjct: 276 GVAGEIK----RARNVFDEMIRE-----GVLPSVATYNAMIQVLCKK 313
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL 67
+ R + N + N +I A R EA +++ + PD+ +YN +I K+ ++
Sbjct: 115 MERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT--TPDTQTYNAIIHGFCKSGEI 172
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM---KSCCN 124
D F E++K G PD FTY+ L+ G + +L+ E++ EM K CC
Sbjct: 173 DRAYGFLEEMKQRA------GCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226
Query: 125 LILDRSTFTAMVDA 138
++ F +VD
Sbjct: 227 SVV---AFNTLVDG 237
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
E++ R+ + + N +++ +AQ +D A ++L S +E G PD ++Y+ +I +
Sbjct: 216 QEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCR 275
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+D E++ G K PD+ TY L+ G A + +V M
Sbjct: 276 CGDVDKGFALLEKMVSRGCK-------PDVVTYTVLVTGLCKAGKMVEACRLVKRM---- 324
Query: 124 NLILDRSTFTAMVDALLYSGSIKV 147
+ D T A+ +L++ G K+
Sbjct: 325 --LEDGCTPNAVTYSLVFDGLCKI 346
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + + N +I +A R+DEA Q+L+ +E+ G + ++YN LI+ + +
Sbjct: 86 KPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVL 145
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + PD TY ++ GF + ++ + EMK D T+
Sbjct: 146 VMQGMTTT----------PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTY 195
Query: 133 TAMVDALLYSGSIK 146
+ +++ L S +++
Sbjct: 196 SILINGLCKSSNLR 209
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 23 VIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
++ A A + A +L +E+ G+ P YN + A K+ K+ M + +KD
Sbjct: 24 LVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKD- 82
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
G PD+ T+ TL+ G A L +++ EM +RS F A
Sbjct: 83 ------GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEM--------ERSGFAA 122
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I ++I+ ++ ++D A ++L+ +E+ G +P++ +YN L+ +K KKL M
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 520
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G P++ TY TLL G D + + FEM L D +
Sbjct: 521 TKMQKD-------GIIPNVITYTTLLQGQCDEHDFDNAFRL-FEMMEQNGLKPDEHAYAV 572
Query: 135 MVDALLYSG 143
+ DAL +G
Sbjct: 573 LTDALCKAG 581
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISAC 61
E + R+ L + +I+ +A D A ++E +++G PDS +Y++L+ A
Sbjct: 585 EAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHAL 644
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K K+L+ +P +Q+ G KC+ IF Y L+
Sbjct: 645 CKQKRLNEALPILDQMSLRGIKCT-------IFAYTILI 676
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 19/189 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I + R+++A +I E +EK G PD +YN LI K + N
Sbjct: 322 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLN 381
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K+ GF P + T+ L+ G+ A+ L + +M S LD F
Sbjct: 382 NAVKE--------GFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMS-SKCKLDLQVFGK 432
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++++L+ +K E++ + +N GL P Y S++ DI
Sbjct: 433 LINSLIKKDRLKEA--------KELLNEISAN-GLVPNVITYTSIIDGYCKSGKVDIALE 483
Query: 195 PYRRMWPDS 203
+ M D
Sbjct: 484 VLKMMERDG 492
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISA 60
+ E+N + EH + +A +A R +EAY + V KG+ + Y LI
Sbjct: 557 MMEQNGLKPDEH------AYAVLTDALCKAGRAEEAYSFI--VRKGVALTKVYYTTLIDG 608
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K D E++ D G C+ PD +TY+ LL K L L I+ +M
Sbjct: 609 FSKAGNTDFAATLIERMIDEG--CT-----PDSYTYSVLLHALCKQKRLNEALPILDQM- 660
Query: 121 SCCNLILDRSTFTAMVDALLYSG 143
S + +T ++D +L G
Sbjct: 661 SLRGIKCTIFAYTILIDEMLREG 683
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL 67
+ R + N + N +I A R EA +++ + PD+ +YN +I K+ ++
Sbjct: 115 MERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT--TPDTQTYNAIIHGFCKSGEI 172
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM---KSCCN 124
D F E++K G PD FTY+ L+ G + +L+ E++ EM K CC
Sbjct: 173 DRAYGFLEEMKQRA------GCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226
Query: 125 LILDRSTFTAMVDA 138
++ F +VD
Sbjct: 227 SVV---AFNTLVDG 237
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
E++ R+ + + N +++ +AQ +D A ++L S +E G PD ++Y+ +I +
Sbjct: 216 QEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCR 275
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+D E++ G K PD+ TY L+ G A + +V M
Sbjct: 276 CGDVDKGFALLEKMVSRGCK-------PDVVTYTVLVTGLCKAGKMVEACRLVKRM---- 324
Query: 124 NLILDRSTFTAMVDALLYSGSIKV 147
+ D T A+ +L++ G K+
Sbjct: 325 --LEDGCTPNAVTYSLVFDGLCKI 346
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + + N +I +A R+DEA Q+L+ +E+ G + ++YN LI+ + +
Sbjct: 86 KPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVL 145
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + PD TY ++ GF + ++ + EMK D T+
Sbjct: 146 VMQGMTTT----------PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTY 195
Query: 133 TAMVDALLYSGSIK 146
+ +++ L S +++
Sbjct: 196 SILINGLCKSSNLR 209
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 23 VIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
++ A A + A +L +E+ G+ P YN + A K+ K+ M + +KD
Sbjct: 24 LVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKD- 82
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
G PD+ T+ TL+ G A L +++ EM +RS F A
Sbjct: 83 ------GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEM--------ERSGFAA 122
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++I +DEA ++L V KG P++++YN L++ K+K++D M
Sbjct: 282 NIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKIL 341
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ S G D FTY TL G+ A + +++ M S C ++ D TF
Sbjct: 342 CVM-------SHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVS-CGVLPDIYTFNM 393
Query: 135 MVDALLYSGSIK 146
++D L G I+
Sbjct: 394 LLDGLCEHGKIE 405
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ +++ RI EA +++ V G EP+ + YN +I + + +++D +
Sbjct: 144 VTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNH 203
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++ G + PD+ TY +L+ H+ I+ +M + D TF+AM+
Sbjct: 204 MEKMGIR-------PDVITYNSLITRLFHSGKWGVSARILSDMMR-MGIHPDVITFSAMI 255
Query: 137 DALLYSGSI 145
D G +
Sbjct: 256 DVFGKEGQL 264
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I A+I+ ++RID A + + G++PD + YN L++ K ++
Sbjct: 327 NGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++++ G K PD TY TL+ G+ DL+S +EI M ++LD FTA
Sbjct: 387 DEMRMVGMK-------PDKITYTTLIDGYCKEGDLESAMEIRKGMNE-EGVVLDNVAFTA 438
Query: 135 MVDALLYSGSIK 146
++ G ++
Sbjct: 439 LISGFCRDGRVR 450
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + I +A I + K GL P ++S+N LI+ K++ LD + +++
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE 286
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
N +PD+FTY+ L+ G L ++ EM+ L + TFTA++D
Sbjct: 287 N-------RIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQ-RGLRPNGITFTALIDGQ 338
Query: 140 LYSGSI 145
S I
Sbjct: 339 CRSRRI 344
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKK 66
+N E L+ + A+I R+ +A + L E VE G++PD +Y ++I K
Sbjct: 424 MNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGN 483
Query: 67 LDVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTYAT 98
+ + ++++ NG K C G G PD TY
Sbjct: 484 VKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNI 543
Query: 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
LL G H K+ ++ E + ++++ LI+D + +T++V Y+ S+K
Sbjct: 544 LLEG--HCKNGKA--EDLLKLRNEKGLIVDYAYYTSLVSE--YNKSLK 585
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 95/244 (38%), Gaps = 32/244 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I R D +I + + KG++PD ++YN LI+ K L
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLV 388
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ G K PD FTY L+ G DL+S LEI EM + LD FTA
Sbjct: 389 IEMTQRGLK-------PDKFTYTMLIDGCCKEGDLESALEIRKEMVK-EGIELDNVAFTA 440
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ G + I E R G+ P Y ++H + D
Sbjct: 441 LISGFCREGQV---------IEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491
Query: 195 PYRRMWPDS--TGTISPEV---------QEEAGHLLMEAALNDGQV--DLALD-KLSNTI 240
+ M D G ++ V Q + ++L++A LN G V D+ + L T+
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTL 551
Query: 241 TRWK 244
WK
Sbjct: 552 QAWK 555
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLD 68
R+ K + I N +I + + EA + ++E ++GL+PD +Y +LI C K L+
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417
Query: 69 VTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTYATLL 100
+ +++ G + C G G PD TY ++
Sbjct: 418 SALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
GF D+++ +++ EM+ C + T+ +++ L G +K
Sbjct: 478 HGFCKKGDVKTGFKLLKEMQ-CDGHVPGVVTYNVLLNGLCKQGQMK 522
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N ++ + +I+EA + + ++GL P +S+N LI+ K+ LD +
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN--LILDRSTFTAMV 136
+N PD+FTY+ L+ G L ++ EM C+ L+ + TFT ++
Sbjct: 288 EN-------RVFPDVFTYSVLINGLCKEGQLDDANKLFLEM---CDRGLVPNDVTFTTLI 337
Query: 137 DALLYSG 143
+ +G
Sbjct: 338 NGHCVTG 344
>gi|302143548|emb|CBI22109.3| unnamed protein product [Vitis vinifera]
Length = 386
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + I N V+ A R+DE S++ + PD +SYN L+++ K +LD+ +
Sbjct: 234 KPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQKVGRLDLCLV 293
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDR 129
F ++ +NG K PD+ TY L+ GF + +L+ L + EMK C ++ + R
Sbjct: 294 FFREMGENGLK-------PDLRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYIYR 346
Query: 130 S 130
S
Sbjct: 347 S 347
>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 257
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
TI N++I+ + R+D+A ++L+S+ KG PD ++++ LI+ K K++D M
Sbjct: 115 TITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFC 174
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ G + TY TL+ GF DL + +++ EM S C + D TF M
Sbjct: 175 EMHRRG-------IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMIS-CGVAPDYITFHCM 226
Query: 136 VDAL 139
+ L
Sbjct: 227 LAGL 230
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD------ 68
N + N +I++ + R +A Q+L +EK + PD ++++ LI+A +K +K+
Sbjct: 44 NVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIY 103
Query: 69 ----------VTMPFNEQLK--------DNGQKC----SSGGFHPDIFTYATLLMGFRHA 106
T+ +N + D+ ++ +S G PD+ T++TL+ G+ A
Sbjct: 104 KEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKA 163
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
K + + +EI EM ++ + T+T ++ G +
Sbjct: 164 KRVDNGMEIFCEMHR-RGIVANTVTYTTLIHGFCQVGDL 201
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +DEA ++ E +++GL P+ +++ LI K +D M +
Sbjct: 210 SVLINGLCKESK----VDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S GF PD+ TY TL+ G DL+ + ++ EM S L D+ T+T +
Sbjct: 266 QM-------LSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEM-SMNGLKPDKITYTTL 317
Query: 136 VDALLYSGSIKV 147
+D G ++
Sbjct: 318 IDGCCKEGDLET 329
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 18/189 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + +D A +I + + +G PD ++YN LI K L
Sbjct: 240 NGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALI 299
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ NG K PD TY TL+ G DL++ E M ++ LD +TA
Sbjct: 300 DEMSMNGLK-------PDKITYTTLIDGCCKEGDLETAFEFRKRMIK-ESIRLDNVAYTA 351
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
+V L G A +F E++ + GL P Y +++E + D
Sbjct: 352 LVSGLCQEGRADD----AEKMFREML-----SVGLKPDNGTYTMIINEFCKKGDVRTASR 402
Query: 195 PYRRMWPDS 203
+ M D
Sbjct: 403 LLKEMQRDG 411
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N V+ + + A + +++ K GL P +S+N L++ I+ LD +
Sbjct: 139 FNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM- 197
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ G PD++TY+ L+ G + E+ EM L+ + TFT ++D
Sbjct: 198 ------HASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLD-RGLVPNGVTFTTLIDV 250
Query: 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
+G + EI K++ S G P Y ++++ L + D V++
Sbjct: 251 HCKNGMVDSA--------MEIYKQMLSQ-GFSPDLITYNTLIYGLCKKGDLKQVRA 297
>gi|357510555|ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500581|gb|AES81784.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 829
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N V N+++ + A + + + ++++K GL+PD SYNIL+ AC ++DV
Sbjct: 249 NIYVFNSLMNVN--AHDLSYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMY 306
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK S G D+FTY+T++ F AK Q L+I +M S + L+ +++
Sbjct: 307 RDLK---HLESVGQLKLDVFTYSTIIKVFADAKLWQMALKIKRDMLS-AGVSLNTIAWSS 362
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
+++A ++G ++ A+ +F E++ C P + ++H YD
Sbjct: 363 LINACAHAGLVE----QAIQLFEEMLLAGCE-----PNTQCFNIILHACVEGCQYD 409
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I + +I ++ +D +IL + V+ G++PD +SY I C+++K +
Sbjct: 500 NQISWSILINICGASENVDGVIEILRTMVDAGIKPDVISYTTAIKVCVESKNFTQALTLY 559
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMG---FRHAKDLQSLLEIVFEMK 120
++K S G HP++ TY TLL + +++Q L I +M+
Sbjct: 560 REMK-------SYGTHPNLVTYNTLLRARSKYGSLREVQQGLAIYQDMR 601
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
GL P+ +S++ILI+ C ++ +D + + D G PD+ +Y T +
Sbjct: 496 GLSPNQISWSILINICGASENVDGVIEILRTMVD-------AGIKPDVISYTTAIKVCVE 548
Query: 106 AKDLQSLLEIVFEMKS 121
+K+ L + EMKS
Sbjct: 549 SKNFTQALTLYREMKS 564
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I ++I+ ++ ++D A ++L+ +E+ G +P++ +YN L+ +K KKL M
Sbjct: 346 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 405
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G P++ TY TLL G D + + FEM L D +
Sbjct: 406 TKMQKD-------GIIPNVITYTTLLQGQCDEHDFDNAFRL-FEMMEQNGLKPDEHAYAV 457
Query: 135 MVDALLYSG 143
+ DAL +G
Sbjct: 458 LTDALCKAG 466
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 19/189 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I + R+++A +I E +EK G PD +YN LI K + N
Sbjct: 207 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLN 266
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K+ GF P + T+ L+ G+ A+ L + +M S LD F
Sbjct: 267 NAVKE--------GFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMS-SKCKLDLQVFGK 317
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++++L+ +K E++ + +N GL P Y S++ DI
Sbjct: 318 LINSLIKKDRLKEA--------KELLNEISAN-GLVPNVITYTSIIDGYCKSGKVDIALE 368
Query: 195 PYRRMWPDS 203
+ M D
Sbjct: 369 VLKMMERDG 377
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISAC 61
E + R+ L + +I+ +A D A ++E +++G PDS +Y++L+ A
Sbjct: 470 EAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHAL 529
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K K+L+ +P +Q+ G KC+ IF Y L+
Sbjct: 530 CKQKRLNEALPILDQMSLRGIKCT-------IFAYTILI 561
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISA 60
+ E+N + EH + +A +A R +EAY + V KG+ + Y LI
Sbjct: 442 MMEQNGLKPDEH------AYAVLTDALCKAGRAEEAYSFI--VRKGVALTKVYYTTLIDG 493
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K D E++ D G C+ PD +TY+ LL K L L I+ +M
Sbjct: 494 FSKAGNTDFAATLIERMIDEG--CT-----PDSYTYSVLLHALCKQKRLNEALPILDQM- 545
Query: 121 SCCNLILDRSTFTAMVDALLYSG 143
S + +T ++D +L G
Sbjct: 546 SLRGIKCTIFAYTILIDEMLREG 568
>gi|303280720|ref|XP_003059652.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458307|gb|EEH55604.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 196
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+FEE + E + N +A+I A + +++D+A +I E + G+EPD ++Y +IS
Sbjct: 49 VFEE---MRAEGVEANIYTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMIS 105
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
AC K +++D + Q+K G + TY LL A E+ +M
Sbjct: 106 ACEKGRRVDKALEIFVQMK-------KAGMEANAITYNALLAACERAGKADDAREVFDDM 158
Query: 120 KSCCNLILDRSTFTAMVDALL 140
K + DR A++ A +
Sbjct: 159 KR-DGIKPDRVAHAALIGACV 178
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
KG+ ++++ + LI+AC K+++ + E+++ + G +I+TY+ L+
Sbjct: 21 KGMGANTITCSALINACGKSRQWKKALEVFEEMR-------AEGVEANIYTYSALISACA 73
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
K L LEI FE+ + D T+ AM+ A
Sbjct: 74 KGKQLDKALEI-FELCKVNGVEPDGITYGAMISA 106
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I NA++ A A + D+A ++ + +++ G++PD +++ LI AC+ ++ +
Sbjct: 131 NAITYNALLAACERAGKADDAREVFDDMKRDGIKPDRVAHAALIGACVGEERYQAAIDAY 190
Query: 75 EQLK 78
+ +K
Sbjct: 191 KAMK 194
>gi|255086920|ref|XP_002505383.1| predicted protein [Micromonas sp. RCC299]
gi|226520653|gb|ACO66641.1| predicted protein [Micromonas sp. RCC299]
Length = 175
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 20/161 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP-F 73
NTI +A+I A ++++ ++A + ++ G+E + +Y+ LISAC K ++LD + F
Sbjct: 32 NTITCSALINACGKSKQWEKALDVFREMKADGVEANIFTYSALISACAKGRQLDKALEVF 91
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E C G PD TY T++ K L+I +M++ N+ + T+
Sbjct: 92 RE--------CQVSGVEPDAITYGTVIAACEKGKRCDEALDIFRQMRA-KNVDANVITYN 142
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174
+++ A +G AL IF ++ K G+ P H
Sbjct: 143 SVLSACDRAGRAD----DALDIFAQMRK-----EGVKPDKH 174
>gi|168038568|ref|XP_001771772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676903|gb|EDQ63380.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 614
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 28/172 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT---------- 64
+ + N +I ++A+R+++AY+I +E G++PD ++Y L++ +KT
Sbjct: 218 SVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMALVVKTGPYRGRSSPA 277
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
++L+ + ++++D PD TY TL+ AK + +LEI M +
Sbjct: 278 QRLEKALQLYQEMQDRN-------IRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVA-AG 329
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
+ D+ TF+ ++++ G +KV AL +F E+ G+ PK + +
Sbjct: 330 VPPDQFTFSFILESAAAGGRLKV----ALEVFEEM-----RAAGVAPKTNTF 372
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 27 SREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS 85
S AQR+++A Q+ + ++ + + PDS++YN L+ A + K +P E++ + +
Sbjct: 274 SSPAQRLEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAK-----VP--EKVLEIYRTMV 326
Query: 86 SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ G PD FT++ +L L+ LE+ EM++ + +TF +++A
Sbjct: 327 AAGVPPDQFTFSFILESAAAGGRLKVALEVFEEMRA-AGVAPKTNTFNFLIEA 378
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 36/141 (25%)
Query: 14 KLNTIVMNAVIEASREAQRID--EAYQILESVE--KGLEPDSLSYNILISACIKT----- 64
K NT N +IEA A D +A+ + E ++ +G+ P++ +YN LI+A K
Sbjct: 368 KTNTF--NFLIEACASAPYPDAEKAWALFEEMKTIEGVVPNAQTYNHLITASCKGGDNAR 425
Query: 65 -------------KKLDVTMPFNEQLKDNGQ------------KCSSGGFHPDIFTYATL 99
++ T FN+ ++ Q K G+ PD TY+TL
Sbjct: 426 ALKAYELMWNSGYQRAVTTATFNKLIQSASQTEGLESALKMYRKMLDAGYKPDAITYSTL 485
Query: 100 LMGFRHAKDLQSLLEIVFEMK 120
++ A DL+ L I EM+
Sbjct: 486 VVACNRADDLEQALSISQEME 506
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 75/143 (52%), Gaps = 16/143 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
IF+E E+ + +++ N +I+ +++R+++A Q+++ + +GL PD +YN L++
Sbjct: 505 IFDEMEL---QGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLT 561
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ--SLLEIVF 117
KT + ++ D Q +S G +PDI TYATL+ G A +Q S L
Sbjct: 562 HFCKTGDI-------KKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI 614
Query: 118 EMKSCCNLILDRSTFTAMVDALL 140
+MK ++L + ++ AL
Sbjct: 615 QMK---GMVLTPHAYNPVIQALF 634
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ +N +I + RID+A I E+V +G PD +YN L++ K M +
Sbjct: 274 VTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDA 333
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ GG PDI+TY +L+ G +++ ++I+ +M S
Sbjct: 334 ML-------LGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVS 371
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
+++V+R+ N + NA+I + + R+DEA +I + KG+ PD ++N LI
Sbjct: 367 DQMVSRD-CSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCL 425
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ M E++K G+ C PD FTY L+ ++ L+ L ++ EM+
Sbjct: 426 SSNHKSAMDLFEEMK--GKGC-----RPDEFTYNMLIDSLCSSRKLEEALNLLKEME 475
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 34/185 (18%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R + + N +I+A +A ++ A ++E + GL PD ++ ++ I+ LD
Sbjct: 196 RRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLD 255
Query: 69 VTMPFNEQLKDNGQKCS----------------------------SGGFHPDIFTYATLL 100
+ EQ+ + G C+ S GF PD FTY TL+
Sbjct: 256 GALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLV 315
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G + +E+V M L D T+ +++ L G I+ A+ I ++V
Sbjct: 316 NGLCKIGHAKHAMEVVDAM-LLGGLDPDIYTYNSLISGLCKLGEIE----EAVKILDQMV 370
Query: 161 KRVCS 165
R CS
Sbjct: 371 SRDCS 375
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N++I + I+EA +IL+ V + P++++YN +IS+ K ++D L
Sbjct: 347 NSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLL-- 404
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDA 138
+S G PD+ T+ +L+ G + + +S +++ EMK C D T+ ++D+
Sbjct: 405 -----TSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCR--PDEFTYNMLIDS 457
Query: 139 LLYS 142
L S
Sbjct: 458 LCSS 461
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
KG PD +YN+LI + ++KL+ + ++++ NG C+ ++ Y TL+ GF
Sbjct: 442 KGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG--CAR-----NVVIYNTLIDGFC 494
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
K ++ EI EM+ + D T+ ++D L S ++
Sbjct: 495 KNKRIEEAEEIFDEME-LQGVSRDSVTYNTLIDGLCKSKRVE 535
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 15/132 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I A+++ +A R++EA+++L+++ G EP+ + Y+ LI KT KL
Sbjct: 608 NIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKL------- 660
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NLILDRST 131
E ++ K S G+ P+++TY++L+ K L +L+++ +M SC N+++
Sbjct: 661 ENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVI---- 716
Query: 132 FTAMVDALLYSG 143
+T M+D L G
Sbjct: 717 YTDMIDGLCKVG 728
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 25/181 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N IV +A+I+ + +++ A ++ + E+G P+ +Y+ LI++ K K+LD+ +
Sbjct: 643 NQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVL 702
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-C--NLILDRST 131
++ +N C+ P++ Y ++ G + ++ +M+ C N+I T
Sbjct: 703 SKMLENS--CT-----PNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVI----T 751
Query: 132 FTAMVDALLYSGSI-KVVGLYA-LCIFG----EIVKRV----CSNPGLWPKPHLYVSMMH 181
+TAM+D G I + + LY +C G I RV C + GL + H + M
Sbjct: 752 YTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMK 811
Query: 182 E 182
+
Sbjct: 812 Q 812
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 37/156 (23%)
Query: 30 AQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG------- 81
A + D+A++I+ E + KG PD +Y+ +I K++ E++K NG
Sbjct: 431 AGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYT 490
Query: 82 ------QKCSSGGFH---------------PDIFTYATLLMGFRHAK---DLQSLLEIVF 117
C +G P++ TY +L+ + A+ D L E++
Sbjct: 491 YTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMML 550
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSI-KVVGLYA 152
S N++ T+TA++D +G I K +YA
Sbjct: 551 LEGSKPNVV----TYTALIDGHCKAGQIDKACQIYA 582
>gi|225446837|ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Vitis vinifera]
Length = 357
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + I N V+ A R+DE S++ + PD +SYN L+++ K +LD+ +
Sbjct: 205 KPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQKVGRLDLCLV 264
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDR 129
F ++ +NG K PD+ TY L+ GF + +L+ L + EMK C ++ + R
Sbjct: 265 FFREMGENGLK-------PDLRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYIYR 317
Query: 130 S 130
S
Sbjct: 318 S 318
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 9/105 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD-VTMPF 73
+T+ N++I+ + +DEA +++E +E+ P +++YNILI + +++D + +
Sbjct: 392 STMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDY 451
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+++ DNG PD TY+ LL G + +KDL L +V +
Sbjct: 452 FQEMIDNG-------VIPDHITYSILLEGLKKSKDLHELRHLVLD 489
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+ +A +L + ++KG PD + YN+LI+ K ++D ++
Sbjct: 217 NVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALL 276
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CC--NLILDRST 131
++ SGG PD+ TY++++ G + L ++ +KS C ++IL
Sbjct: 277 -------RRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVIL---- 325
Query: 132 FTAMVDALLYSGSI 145
++ ++D L +G +
Sbjct: 326 YSTLIDGLCKAGKV 339
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 10 REH-WKLNTIVMNAVIEA---SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
R+H + N + N++I+ + E R E ++ ++SVE P ++YN L+ +T
Sbjct: 2 RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVE--CSPSMVTYNTLLDGLFRTG 59
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC-- 123
KL+ M +++ D D+ ++ L+ G A +++ LE +M C
Sbjct: 60 KLERAMALFQEMLDRRSH--------DVISFNILVTGLCRAGKIETALEFFRKMDDRCSP 111
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
N+I T++ ++D L + +
Sbjct: 112 NVI----TYSVLIDGLCKANRV 129
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ N +++ +++ A + + + D +S+NIL++ + K++ + F ++
Sbjct: 46 VTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKM 105
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMV 136
D +CS P++ TY+ L+ G A + +E++ MK+ C+ D T+T +V
Sbjct: 106 DD---RCS-----PNVITYSVLIDGLCKANRVSQAVELLESMKARGCS--PDVITYTILV 155
Query: 137 DAL 139
D L
Sbjct: 156 DGL 158
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + ++VI + R+DEA ++L V+ +G PD + Y+ LI K K+D
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
E + +G C + D+ TY+TL+ G A
Sbjct: 345 LYEVMTGDG--CDA-----DVVTYSTLIDGLCKA 371
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 32/168 (19%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LN +V +++I+ + RIDEAY ILE + +KGL P++ ++N L+ A +K +++D +
Sbjct: 689 LNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVC 748
Query: 74 NEQLKD--------------NG--------------QKCSSGGFHPDIFTYATLLMGFRH 105
+ +K+ NG Q+ G P+ TY T++ G
Sbjct: 749 FQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLAR 808
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYAL 153
++ ++ KS I D + + AM++ L S + K + Y L
Sbjct: 809 VGNVLEAKDLFERFKSSGG-IPDSACYNAMIEGL--SNANKAMDAYIL 853
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N ++ +++EA +ILE+++ P+ SYNILI K +L+ + +
Sbjct: 376 SVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQD 435
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+K+ G P+I T ++ A+ L I + K C D TF
Sbjct: 436 SMKE-------AGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTP---DSVTFC 485
Query: 134 AMVDALLYSGSI 145
+++D L G +
Sbjct: 486 SLIDGLGRHGKV 497
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T N VI+ ++ ++++AYQ+LE ++ KGL+P ++Y +I K +LD
Sbjct: 619 LDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYML 678
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+ K S ++ Y++L+ GF + I+ E+ L + T+
Sbjct: 679 FEEAK-------SKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQ-KGLTPNTYTWN 730
Query: 134 AMVDALLYSGSI 145
++DAL+ + I
Sbjct: 731 CLLDALVKAEEI 742
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +V ++I + R ++ ++I E + +G PD + N + K +++
Sbjct: 515 NAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALF 574
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++K + G PD+ +Y+ L+ G + ++ +EMK L LD +
Sbjct: 575 EEIK-------AQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKE-QGLHLDTRAYNI 626
Query: 135 MVDALLYSGSI 145
++D SG +
Sbjct: 627 VIDGFCKSGKV 637
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I +N +I+ +AQR+DEA I ++ K PDS+++ LI + K++
Sbjct: 445 NIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLY 504
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E++ D+GQ P+ Y +L+ F
Sbjct: 505 EKMLDSGQT-------PNAVVYTSLIRNF 526
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
+ + ++ N I+ + ++D A++ ++ +GL PD +++ +I K +++D +
Sbjct: 268 FNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAV 327
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E+L N P ++ Y T++MG+
Sbjct: 328 ELFEELDSNKSV-------PCVYAYNTMIMGY 352
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 24/185 (12%)
Query: 23 VIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
+I +A+RIDEA Q+ E + +G P+++SYN LI + +L + + NG
Sbjct: 261 LINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNG 320
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRSTFTAMVDA 138
P+++TYA LL GF L + M+S NL++ + +V+A
Sbjct: 321 N-------LPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVM----YNILVNA 369
Query: 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRR 198
+ SG++K A +F E+ GL P +Y ++++ L D +R
Sbjct: 370 MCKSGNLKD----ARELFSELFV-----IGLQPNVQIYTTIINGLCKEGLLDEALEAFRN 420
Query: 199 MWPDS 203
M D
Sbjct: 421 MEDDG 425
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVT 70
+ K N ++ N ++ A ++ + +A ++ E GL+P+ Y +I+ K LD
Sbjct: 355 YLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEA 414
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ ++D+G C PD F+Y ++ GF KD + ++ EM+
Sbjct: 415 LEAFRNMEDDG--CP-----PDEFSYNVIIRGFLQHKDESRAVHLIGEMR 457
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT +N +I + QR+D + +L + ++ GL+P +++ LI+ K K +
Sbjct: 9 NTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELF 68
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+ + + G PD +TY T++ G
Sbjct: 69 DDM-------VARGCQPDDYTYTTIINGL 90
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 22/112 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILI------SACIKTKKL- 67
N + N +++ + ++ A +L+++ E G+EPD ++YN L+ + ++ +KL
Sbjct: 184 NVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLF 243
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
DV + + G PD+F+Y+ L+ G+ AK + ++ EM
Sbjct: 244 DVMI--------------TKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEM 281
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 585
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNI 56
+FE E+ N + KL+ N +I+ +A++++ A+++ E + ++GL+PD ++Y I
Sbjct: 428 LFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCI 487
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I+ K ++D + +++NG C+ P++ TY+ LL GF L+ +++++
Sbjct: 488 MINGFCKNGQVDNANILFQMMEENG--CT-----PNLLTYSALLHGFYKNNKLEEVVKLL 540
Query: 117 FEM 119
+M
Sbjct: 541 HKM 543
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N N +I+ + + EA ++ E V++G+ PD ++++ LI K +
Sbjct: 234 KPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKK 293
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
F E + G PD+FT+ +L+ GF DL S E+ M S
Sbjct: 294 FLETMMLRG-------IVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPS 335
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I +A+R DEAY+IL +E +G +PD +++ +LI ++
Sbjct: 306 KPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKD 365
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDR 129
++K + QK PD TY TLL F + QS++EI MK+ N++
Sbjct: 366 VFWKMKKSDQK-------PDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVV--- 415
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+TA++DAL G + AL +F E+ ++ G+ P+ + Y S++
Sbjct: 416 -AYTAVIDALCQVGRV----FEALEMFDEMKQK-----GIVPEQYSYNSLI 456
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N ++ R A ++ + + V++G+ PD SY I+I K +L+ +
Sbjct: 971 KANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLT 1030
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ QL + G PD+ TY L+ G +K L+ + + EM+
Sbjct: 1031 YFRQLLEM-------GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ 1071
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +V+N++I+ +A R DEA+QI + E LEP +YN L++ + K+ M
Sbjct: 588 DVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 647
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
E++ + + P++ TY T+L + L++++ M K C I D S++
Sbjct: 648 EEMYHS-------NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGC---IPDLSSY 697
Query: 133 TAMVDALL 140
++ L+
Sbjct: 698 NTVIYGLV 705
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A ++ RI+E ++ E + KG E ++YN +IS +K+++L EQ D
Sbjct: 873 NLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL-------EQAID 925
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S GF P TY LL G A ++ + EM
Sbjct: 926 LYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 965
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP- 72
K TI+++ + +A + + Q+LE GLEPD ++YN+LI K+K+L+ +
Sbjct: 1010 KSYTIIIDTLCKAGQLNDGLTYFRQLLE---MGLEPDLITYNLLIDGLGKSKRLEEAVSL 1066
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLM 101
FNE K G P+++TY +L++
Sbjct: 1067 FNEMQKK--------GIVPNLYTYNSLIL 1087
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L T N++I + ID A + E E G PD +YN+L+ A K+ +++ +
Sbjct: 832 LKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 891
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++ G+ TY T++ G ++ L+ +++ + + S T+
Sbjct: 892 QEEMHRK-------GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS-QGFSPTPCTYG 943
Query: 134 AMVDALLYSGSIK 146
++D LL +G I+
Sbjct: 944 PLLDGLLKAGRIE 956
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP-F 73
+ + NAV+ ++ R+ A ++ ++ G+ PD+++Y ++I C K K D + F
Sbjct: 518 DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIF 577
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ +++N C PD+ +L+ A +I +++K NL T+
Sbjct: 578 YDMIENN---CV-----PDVLVVNSLIDTLYKAGRGDEAWQIFYQLKE-MNLEPTDGTYN 628
Query: 134 AMVDALLYSGSIKVV 148
++ L G +K V
Sbjct: 629 TLLAGLGREGKVKEV 643
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
+L+ + A+I+ ++DEA +L + E GLEP+ + Y ++ AC K+ K+ +
Sbjct: 429 LELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAI 488
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS- 130
+++ D+ GF P++ TY L+ G A + + +M+ +L LD +
Sbjct: 489 AMLQKILDS-------GFQPNVITYCALIDGLCKAGSIDEAISHFNKMR---DLGLDPNV 538
Query: 131 -TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+TA+VD L +G + A+ +F E+V +
Sbjct: 539 QAYTALVDGLCKNGCLN----EAVQLFNEMVHK 567
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I NA++ +A +++ A+ ++ES V+KG+ PD ++Y++L+ A K ++D +
Sbjct: 394 NVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 453
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ +S G P++ T+ +++ G + ++ +M L+ D+ T+
Sbjct: 454 HGM-------ASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCT 506
Query: 135 MVDALLYSG 143
++D L +G
Sbjct: 507 LIDGLFRTG 515
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
++I +++ A A R D+A Q++ ++ G +PD+++YNIL+ K+ + + +
Sbjct: 671 DSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVL 730
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS----CCNLILDRS 130
E++ G HPD+ TY TL+ A DL+ + +M S CC + +
Sbjct: 731 EEMVGKGH-------HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCC--VPNVV 781
Query: 131 TFTAMVDALLYSGSI 145
T++ +++ L G I
Sbjct: 782 TYSVLINGLCKVGRI 796
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
W +T+ N +++ ++ + ++A +LE V KG PD ++YN LI + K L+
Sbjct: 703 WDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEAR 762
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRS 130
+ + +C P++ TY+ L+ G + E++ E M+ C+++ +
Sbjct: 763 RLHGDMSSRVSRCCV----PNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNII 818
Query: 131 TFTAMVDAL 139
T+ + +D L
Sbjct: 819 TYNSFLDGL 827
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ + +I+ + + DEA + + + G P+ ++YN+L++ KT K++
Sbjct: 853 DTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMI 912
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTF 132
E + D G PD+ TY+ L+ F A + LE++ M S C ++ TF
Sbjct: 913 ESMVDK-------GVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVV---TF 962
Query: 133 TAMVDALLYS 142
+++D L S
Sbjct: 963 NSIIDGLCKS 972
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ + +I+ + +IDEA + + + G P+ ++YN L++ K K++
Sbjct: 359 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 418
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTF 132
E + D G PD+ TY+ L+ F A + LE++ M S C ++ TF
Sbjct: 419 ESMVDK-------GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV---TF 468
Query: 133 TAMVDALLYS 142
+++D L S
Sbjct: 469 NSIIDGLCKS 478
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N ++ + +++ A+ ++ES V+KG+ PD ++Y++L+ A K +D +
Sbjct: 888 NVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELL 947
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ +S G P++ T+ +++ G + ++ +M L D+ T+
Sbjct: 948 HGM-------ASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCT 1000
Query: 135 MVDALLYSG 143
++D L +G
Sbjct: 1001 LIDGLFRTG 1009
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 21 NAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N V+++ A A +I E G+ P ++YN +I+ K+ +L M E+L
Sbjct: 184 NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 243
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMV 136
+ G HPD+ TY TL+ A DL+ + +M +SC + + T++ ++
Sbjct: 244 ERGH-------HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSC---VPNVVTYSVLI 293
Query: 137 DALLYSGSI 145
+ L G I
Sbjct: 294 NGLCKVGRI 302
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD 68
R+ + N +I ++ + ++ E VE+G PD ++YN LI + K L+
Sbjct: 209 RDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLE 268
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
+ + SS P++ TY+ L+ G + E++ EM + C+++
Sbjct: 269 EARRLHGDM-------SSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLP 321
Query: 128 DRSTFTAMVDAL 139
+ T+ + +D L
Sbjct: 322 NIITYNSFLDGL 333
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 22/177 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+T N I + + A Q+ +E L PD +++NILI+ K + + F
Sbjct: 531 DTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALF 590
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E + N PD+ T+ L+ G A +++ +I+ M + + + T+
Sbjct: 591 EEMVAKN--------LQPDVMTFGALIDGLCKAGQVEAARDILDLMGN-LGVPPNVVTYN 641
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
A+V L SG I+ C F E + + G P Y S+++ L A+R D
Sbjct: 642 ALVHGLCKSGRIE-----EACQFLEEM----VSSGCVPDSITYGSLVYALCRASRTD 689
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ +A +I EA +I + +E G+ +S++YN LI K+++++
Sbjct: 469 SVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLM 528
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFT 133
+Q+ GQK PD FTY +LL F D++ +IV M S C D T+
Sbjct: 529 DQMIMEGQK-------PDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE--PDIVTYG 579
Query: 134 AMVDALLYSGSIKV 147
++ L +G ++V
Sbjct: 580 TLISGLCKAGRVEV 593
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
+++ +E + + N+VI + + EA + L+ + + P++++YN LIS K
Sbjct: 319 DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKE 378
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CC 123
++ E+ + + +S G PD+ T+ +L+ G ++ + +E+ EM+S C
Sbjct: 379 NQV-------EEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
D T+ ++D+L G +
Sbjct: 432 E--PDEFTYNMLIDSLCSKGKL 451
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I + +++EA ++ + KG+ PD ++N LI T+ V M
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSCCNLILDRSTF 132
E+++ S G PD FTY L+ L L ++ E+ C ++ T+
Sbjct: 424 EEMR-------SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI---TY 473
Query: 133 TAMVDALLYSGSIK 146
++D + I+
Sbjct: 474 NTLIDGFCKANKIR 487
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 36 AYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A ++ E + KG EPD +YN+LI + KLD + +Q++ +G C+ +
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARS-----VI 471
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
TY TL+ GF A ++ EI EM+ + + T+ ++D L S ++
Sbjct: 472 TYNTLIDGFCKANKIREAEEIFDEME-VHGVSRNSVTYNTLIDGLCKSRRVE 522
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + N +I+A A ++ A +LE + GL PD ++ ++ I+ LD +
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALR 245
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
EQ+ + G CS ++ + GF ++ L + EM + D+ TF
Sbjct: 246 IREQMVEFG--CSWSNVSVNVIVH-----GFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 133 TAMVDALLYSGSIK 146
+V+ L +G +K
Sbjct: 299 NTLVNGLCKAGHVK 312
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
+L+ + A+I+ ++DEA +L + E GLEP+ + Y ++ AC K+ K+ +
Sbjct: 429 LELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAI 488
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS- 130
+++ D+ GF P++ TY L+ G A + + +M+ +L LD +
Sbjct: 489 AMLQKILDS-------GFQPNVITYCALIDGLCKAGSIDEAISHFNKMR---DLGLDPNV 538
Query: 131 -TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+TA+VD L +G + A+ +F E+V +
Sbjct: 539 QAYTALVDGLCKNGCLN----EAVQLFNEMVHK 567
>gi|452819918|gb|EME26968.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 466
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 32 RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK-DNGQKCSSGGFH 90
+ D A+ + ++ ++P+ + YN +I C +T +++ + ++LK +NG+
Sbjct: 229 QYDSAWVTFQQLKHFMKPNKVVYNAMIDICSRTDRMEQALKLYQELKLENGET------- 281
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS-TFTAMVDAL 139
PD +TY +L G+ A +LQS +E+ +M S I+ R+ T++ ++D+L
Sbjct: 282 PDEYTYNAILKGYARAGNLQSAIEVSNQMHS--EGIIPRAITYSVLIDSL 329
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+++ A + A ++ + +G+ P +++Y++LI + K K+LD F E+++
Sbjct: 288 NAILKGYARAGNLQSAIEVSNQMHSEGIIPRAITYSVLIDSLGKCKRLDEAFGFFEEME- 346
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ G P++ T+ LL + + L IV M+ + DR T+ A++ A
Sbjct: 347 ------AKGIQPNVITFNVLLSACAASNNYTRALVIVDWMEE-RGVAFDRYTYNALMQA 398
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I + +I++ + +R+DEA+ E +E KG++P+ +++N+L+SAC + + +
Sbjct: 320 ITYSVLIDSLGKCKRLDEAFGFFEEMEAKGIQPNVITFNVLLSACAASNNYTRALVIVDW 379
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE 114
+++ G D +TY L+ ++K + ++
Sbjct: 380 MEERGVAF-------DRYTYNALMQASVNSKQYEETVK 410
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNI 56
+FE E+ N+ + KL+ N +I+ +A +++ A+++ E + ++ L+PD ++YNI
Sbjct: 468 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 527
Query: 57 LISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
+I C + + + F QK G PD TYATL+ GF +K L+ ++E+
Sbjct: 528 MIHEFCRGGQVVKANILF--------QKMEKNGCTPDKITYATLIRGFFESKKLEKVVEL 579
Query: 116 VFEM 119
+ M
Sbjct: 580 LHMM 583
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++IE ++ A ++ S+ KG EPD + Y +LI+ KT K++ M
Sbjct: 346 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 405
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+ G++ PD+ TY LL G
Sbjct: 406 NGMLQVGKR-------PDVKTYGALLTGL 427
>gi|147742767|gb|ABQ50548.1| hypothetical protein [Brassica rapa]
Length = 229
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I +A+ +DE ++ + +GL D+++YN L+ + KLDV
Sbjct: 45 DIVTFNILINGYCKAKLVDEGMRVFREISLRGLVADTVTYNTLVQGFCEAGKLDVA---- 100
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K+ Q+ S G PDI TY LL G +LQ L+I+ +M+ C
Sbjct: 101 ---KELFQEMVSQGARPDIVTYRILLDGLCDNGELQEALDILEKMQKC 145
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N +++ EA ++D A ++ E V +G PD ++Y IL+ +L +
Sbjct: 80 DTVTYNTLVQGFCEAGKLDVAKELFQEMVSQGARPDIVTYRILLDGLCDNGELQEALDIL 139
Query: 75 EQLKDNGQKCSSG----------------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
E++ QKC G G P TY TL+ + + +E++ E
Sbjct: 140 EKM----QKCKKGSLSEADKLFRKMGEEDGTAPSECTYNTLIRAHLGGSGVATSVELIEE 195
Query: 119 MKSCCNLILDRSTFTAMVDAL 139
MK C D ST ++D L
Sbjct: 196 MKR-CGFSADASTMKMVIDML 215
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 43 VEKGLEPDSLSYNILISA-CIKTK------KLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95
+ +G++PD+++YN LI CI+ + +DV M S G PDI T
Sbjct: 2 ITRGIDPDTITYNSLIDGLCIENRLDEANQMVDVVMV-------------SKGCDPDIVT 48
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
+ L+ G+ AK + + VF S L+ D T+ +V +G + V
Sbjct: 49 FNILINGYCKAKLVDEGMR-VFREISLRGLVADTVTYNTLVQGFCEAGKLDV 99
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 31/188 (16%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQ----KCSSGGFHPDIFTY 96
E +G++PD ++YN L++AC N L D + + GG PDI TY
Sbjct: 238 EMRHEGIQPDIITYNTLLNACA-----------NRGLGDEAEMVFRTMNEGGMVPDITTY 286
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIF 156
L+ F L+ + E++ EM+S NL D S++ +++A G I+ +A+ +F
Sbjct: 287 RNLVETFGKLNKLEKVSELLKEMESSGNLP-DISSYNVLLEAYASKGDIR----HAMGVF 341
Query: 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW-----PD-STGTISPE 210
++ + C P Y +++ YD V+ + M PD T + E
Sbjct: 342 RQMQEARCV-----PNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIE 396
Query: 211 VQEEAGHL 218
V E G+
Sbjct: 397 VFGEGGYF 404
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N++I+ + R+D+ E ++ EPD ++YN LI+ K+ KL + F
Sbjct: 167 DTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFY 226
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K +G K P++ +Y+TL+ F +Q ++ +M+ + + + T+T+
Sbjct: 227 REMKQSGLK-------PNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGH-VPNEFTYTS 278
Query: 135 MVDA 138
+VDA
Sbjct: 279 LVDA 282
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 46/265 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I+ +A+R+ EA ++ + V G+ P+ SYN LI +K K +D +
Sbjct: 307 NVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELL 366
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+LK G PD+ Y T + G + +++ ++ EM+ + + +T
Sbjct: 367 NELKGR-------GIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQE-NGIKANTLIYTT 418
Query: 135 MVDALLYSGSIKVVGLYAL------------CIFGEIVKRVCSNP--------------- 167
++DA SG+ GL+ L F ++ +C N
Sbjct: 419 LMDAYFKSGN-PTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSND 477
Query: 168 -GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW-----PDSTGTIS-PEVQEEAGHLLM 220
GL P +Y +M+ L + + +M PD T S + + G++L
Sbjct: 478 FGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLE 537
Query: 221 EAALND--GQVDLALDKLSNTITRW 243
AL D ++ + LD L+ T W
Sbjct: 538 ALALRDKMAEIGMKLDLLAYTSLVW 562
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N +I+ + I+ A + E ++ +GL PD+++YN +I K +LD T+
Sbjct: 130 KPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVY 189
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
F E++K S PD+ TY +L+ F + L LE EMK L + ++
Sbjct: 190 FFEEMK-------SMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQ-SGLKPNVVSY 241
Query: 133 TAMVDAL 139
+ +VDA
Sbjct: 242 STLVDAF 248
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ NA+++ RI+EA Q+ E K PD ++Y L+ +L+
Sbjct: 293 DTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLL 352
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E +K ++ G PD+ TY+ ++ G+ AK E + EM + N+ + T+++
Sbjct: 353 ENMK------TAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIA-RNVAPNAVTYSS 405
Query: 135 MVDALLYSGSI 145
++D L +G +
Sbjct: 406 LIDGLCKAGRV 416
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
E+V R+ + + +V++ ++D A +++ ++ KG+EPD +++ LI+
Sbjct: 69 REMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCN 128
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKS 121
+K+D + +++ + D + + L+ G + + E+ EM+
Sbjct: 129 ARKVDEALKLYKEI-------LTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMRE 181
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
D T+TA++D SG+++ A+ + G + R C P Y S++H
Sbjct: 182 DGAWKPDVVTYTALIDGFCKSGNLE----KAMKMLGVMEGRKC-----VPNVVTYSSLLH 232
Query: 182 ELAARVDYDIVKSPYRRM 199
L D D +RRM
Sbjct: 233 GLCKAGDLDQALDLFRRM 250
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+F+E E+ WK + + A+I+ ++ +++A ++L +E + P+ ++Y+ L+
Sbjct: 173 LFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLH 232
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K LD Q D ++ +S G P++ TY TL+ G A + + ++ EM
Sbjct: 233 GLCKAGDLD-------QALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEM 285
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
+ C D ++ A++D G I+ A +F E+ + C
Sbjct: 286 TATC-CPADTVSYNALLDGYCRLGRIE----EAKQLFKEMAAKSC 325
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108
P+ +YN++++ K + ++++D PD+ TY+T++ GF +
Sbjct: 7 PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKS------VAPDLVTYSTVINGFCKQGE 60
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+ EI+ EM + + D T+T++VD L G +
Sbjct: 61 MDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKM 97
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 43/184 (23%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
N + +++I+ +A R++ A ++L++V+K PD ++Y I+I T + + + E
Sbjct: 399 NAVTYSSLIDGLCKAGRVNHAMEVLKNVDK---PDVVTYTIVIEGLCGTDRTEEALTLLE 455
Query: 76 QLKDN-------------GQKCSSG---------------GFHPDIFTYATLLMGFRHAK 107
++ + G C G G P + TY TLL GF
Sbjct: 456 EMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTG 515
Query: 108 DLQSLLEIVFEMK-------SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
++ E+ M+ S NL+ +++ F+A++ L + I A+ + E+
Sbjct: 516 RMEIAYELFEVMRRKAKKSSSAANLVPEQA-FSALIRGLCKAREID----KAMAVVEELR 570
Query: 161 KRVC 164
R C
Sbjct: 571 SREC 574
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF- 73
+TI N++I+ + R+D+A I + V KG P+ ++ N LI C + K++D +
Sbjct: 184 DTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLL 243
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+E L+ G PD +Y TL+ GF A DL + ++ EM S IL
Sbjct: 244 HEMLRR--------GLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQVRWIL 289
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 13/149 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I A + +I EA ++ E + + + PD+++YN LI K +LD
Sbjct: 149 DVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIF 208
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + S G P++ T TL+ G AK + ++++ EM L+ D ++
Sbjct: 209 DLM-------VSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLR-RGLVPDSVSYNT 260
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRV 163
++ +G + A +F E++ +V
Sbjct: 261 LIHGFCQAGDLNA----AQDLFQEMISQV 285
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNI 56
IFE ++ N + KL+ +I+ +A +++ A+++ E + E+G++PD+++Y+
Sbjct: 428 IFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSS 487
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I K ++D +++++NG CS PD+ TY+ L+ GF + L+ +++++
Sbjct: 488 MIHGFCKKGQVDKANILFQKMEENG--CS-----PDLITYSILMRGFYESNKLEKVVQLL 540
Query: 117 FEM 119
M
Sbjct: 541 HRM 543
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 53/220 (24%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
N ++I+ ++ A ++ S+ KG EPD +SYN+LI+ KT K++ M F
Sbjct: 306 NLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLF 365
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIV--FEMKS----CC- 123
NE L G PD+ T LL A D + L ++ + M CC
Sbjct: 366 NEMLHV--------GMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCI 417
Query: 124 ------------------------NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159
N+ LD TF ++D L +G ++ A +F ++
Sbjct: 418 FLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLET----AWELFEKL 473
Query: 160 VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
+ G+ P Y SM+H + D +++M
Sbjct: 474 YEE-----GIQPDAMAYSSMIHGFCKKGQVDKANILFQKM 508
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILI------SACIKTKKLD 68
N I + +I+ + +EA + E V++G++P+ +++++LI IK KKL
Sbjct: 236 NVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLL 295
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
M G P++FTY +L+ GF DL S E+ M S D
Sbjct: 296 EMM-------------IQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPS-KGYEPD 341
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ +++ Y ++KV A+ +F E++ + G+WP ++ L
Sbjct: 342 VISYNMLING--YCKTLKVEE--AMKLFNEML-----HVGMWPDVKTSGVLLKALFLAGK 392
Query: 189 YDIVKSPYRRMWP 201
D K +R + P
Sbjct: 393 VDDAKELFRVIKP 405
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNI 56
+FE E+ N+ + KL+ N +I+ +A +++ A+++ E + ++ L+PD ++YNI
Sbjct: 460 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 519
Query: 57 LISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
+I C + + + F QK G PD TYATL+ GF +K L+ ++E+
Sbjct: 520 MIHEFCRGGQVVKANILF--------QKMEKNGCTPDKITYATLIRGFFESKKLEKVVEL 571
Query: 116 VFEM 119
+ M
Sbjct: 572 LHMM 575
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++IE ++ A ++ S+ KG EPD + Y +LI+ KT K++ M
Sbjct: 338 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 397
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+ G++ PD+ TY LL G
Sbjct: 398 NGMLQVGKR-------PDVKTYGALLTGL 419
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+V N +I + ++DEA ++LE + KG+ PD +YNI+I + + F
Sbjct: 151 DTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFF 210
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K PD+ TY TLL G + + ++ EM++ + D +TF
Sbjct: 211 GMMKRRKHS-------PDVVTYNTLLNGLKKLRRTDEACDLFDEMQA-NKCMPDLTTFGT 262
Query: 135 MVDALLYSGSIK 146
++D L +G ++
Sbjct: 263 LIDTLAKAGRME 274
>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
Length = 500
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 37/225 (16%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68
R++ L+ + AV+ +R+D+A + + G+ D+ +YN+L+ ++ + +
Sbjct: 286 RDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSGRSE 345
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
E+L D+ G ++ TY T++ G L+S + + +EM+ + D
Sbjct: 346 EAFRILEELGDD------PGCVANLLTYNTVIAGC----CLESGMVLFYEMRQ-RGIAPD 394
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALC-------------IFGEIVKRVCSNPGLWPKPHL 175
+T++A++D LL SG I+ + LC + G +V R+C W +
Sbjct: 395 FATYSALIDRLLGSGEIRRA--FDLCEEMLASGLSPPSGVLGRVVARLC-----WSRRGD 447
Query: 176 YVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE--VQEEAGHL 218
+ + E+A VD + + W D G E +EE G +
Sbjct: 448 LAAKLIEMAMAVDD---TASFSLPWDDEDGAAQDEDSQREELGSI 489
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
N ++I+A ++ R+ +A + LE + + G+ PD +++ LI K + ++ F
Sbjct: 10 NQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEIF 69
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E +K N +C PD F Y L+ G+ + LE++ EM+ + D +
Sbjct: 70 QEMIKSN--RC-----QPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYN 122
Query: 134 AMVDALLYS 142
++VD L S
Sbjct: 123 SIVDGLCRS 131
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 33/168 (19%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE + +LN ++ +++I+ + RIDEAY I+E + +KGL P+ ++N L+
Sbjct: 676 LFEE---AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 732
Query: 60 ACIKTKKLDVTMPFNEQLKD--------------NG--------------QKCSSGGFHP 91
A +K +++ + + +KD +G Q+ GF P
Sbjct: 733 ALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKP 792
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++FTY T++ G A ++ + +FE + D + + A+++ L
Sbjct: 793 NVFTYTTMISGLAKAGNIVE-ADTLFEKFKEKGGVADSAIYNAIIEGL 839
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T N VI+ ++ ++++AYQ+LE ++ KG EP ++Y +I K +LD
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E+ K S G ++ Y++L+ GF
Sbjct: 677 FEEAK-------SKGIELNVVIYSSLIDGF 699
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 22/171 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I +N +++ +AQR+D+A I E ++ K PD+++Y LI + ++D
Sbjct: 443 NVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLY 502
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
EQ+ D Q P+ Y +L+ F + +I EM C +L +T+
Sbjct: 503 EQMLDANQ-------IPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTY 555
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+D + +G I+ +F EI N G P Y ++H L
Sbjct: 556 ---MDCVFKAGEIE----KGRALFQEI-----KNLGFIPDARSYTILIHGL 594
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ + N ++ ++DEA + E ++K P+ +YNI+I K KL+ + +
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSCCNLILDRSTFT 133
+KD G P++ T ++ A+ L I + K+C D T+
Sbjct: 434 AMKD-------AGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTC---RPDAVTYC 483
Query: 134 AMVDALLYSGSI 145
++++ L G +
Sbjct: 484 SLIEGLGRHGRV 495
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 33/168 (19%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE + +LN ++ +++I+ + RIDEAY I+E + +KGL P+ ++N L+
Sbjct: 676 LFEE---AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 732
Query: 60 ACIKTKKLDVTMPFNEQLKD--------------NG--------------QKCSSGGFHP 91
A +K +++ + + +KD +G Q+ GF P
Sbjct: 733 ALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKP 792
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++FTY T++ G A ++ + +FE + D + + A+++ L
Sbjct: 793 NVFTYTTMISGLAKAGNIVE-ADTLFEKFKEKGGVADSAIYNAIIEGL 839
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T N VI+ ++ ++++AYQ+LE ++ KG EP ++Y +I K +LD
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E+ K S G ++ Y++L+ GF
Sbjct: 677 FEEAK-------SKGIELNVVIYSSLIDGF 699
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 22/171 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I +N +++ +AQR+D+A I E ++ K PD+++Y LI + ++D
Sbjct: 443 NVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLY 502
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
EQ+ D Q P+ Y +L+ F + +I EM C +L +T+
Sbjct: 503 EQMLDANQ-------IPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTY 555
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+D + +G I+ +F EI N G P Y ++H L
Sbjct: 556 ---MDCVFKAGEIE----KGRALFQEI-----KNLGFIPDARSYTILIHGL 594
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
+ +N + +I R+D A +L+ ++ LEPD + YN+ I K K+D+
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAW 290
Query: 72 PFNEQLKDNG 81
F ++K NG
Sbjct: 291 KFFHEMKANG 300
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ + N ++ ++DEA + E ++K P+ +YNI+I K KL+ + +
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSCCNLILDRSTFT 133
+KD G P++ T ++ A+ L I + K+C D T+
Sbjct: 434 AMKD-------AGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTC---RPDAVTYC 483
Query: 134 AMVDALLYSGSI 145
++++ L G +
Sbjct: 484 SLIEGLGRHGRV 495
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 11/133 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVT 70
K N + N+V+ +A R+++A ++ E V++GL PD +SYN L+ C +
Sbjct: 223 LKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEAL 282
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
F E + G PD+ T+ +L+ A +L+ + +V EM+ L ++
Sbjct: 283 SVFAEMTRK--------GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRE-RGLQMNEI 333
Query: 131 TFTAMVDALLYSG 143
TFTA++D G
Sbjct: 334 TFTALIDGFCKKG 346
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 18/170 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I R+DEA +++ +E KG++PD ++Y+ ++SA K N
Sbjct: 366 SVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLN 425
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ +N G PD TY++L+ K L ++F+ L D T+T+
Sbjct: 426 QQMLEN-------GVLPDAITYSSLIRVLCEEKRLGD-AHVLFKNMISLGLQPDEVTYTS 477
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++D G+++ AL + E+VK G+ P Y +++ L+
Sbjct: 478 LIDGHCKEGNVE----RALSLHDEMVK-----AGVLPDVVTYSVLINGLS 518
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I +++I E +R+ +A+ + ++ + GL+PD ++Y LI K ++ + +
Sbjct: 436 DAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLH 495
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ G PD+ TY+ L+ G + + ++F++
Sbjct: 496 DEM-------VKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKL 533
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+A +A +DEA Q+L E EK + P+ ++++ +I+ +K LD +
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYK 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K+ G +P++ TY TL+ GF + + LE+ +M C + +++ +
Sbjct: 438 RMMKERG-------INPNVVTYGTLIDGFFKFQGQDAALEVYHDML-CEGVKVNKFIVDS 489
Query: 135 MVDALLYSGSIK 146
+V+ L +G I+
Sbjct: 490 LVNGLRQNGKIE 501
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I N ++ +++A Y + E V G P SL++ ++ AC ++++LDV +
Sbjct: 621 KPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILD 680
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
+E + + G H DI Y TLL
Sbjct: 681 IHEWMMN-------AGLHADITVYNTLL 701
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK-TKKLDVTMPF 73
N N ++ RI EA +L +EK GLEP++L+Y+IL + K + K++ +
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLY 822
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E + GF P + TY L+ F A + E+ +M+
Sbjct: 823 CEMVGK--------GFVPKVSTYNALISDFTKAGMMTQAKELFKDMQ 861
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN ++ +++I+ + R+DEAY ++E + +KGL P+ ++N L+ +K ++++ +
Sbjct: 547 ELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALV 606
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ +KD KC+ P+ TY L+ G + EM+ L + T+
Sbjct: 607 CFQSMKD--LKCT-----PNQITYCILINGLCKVRKFNKAFVFWQEMQK-QGLKPNTITY 658
Query: 133 TAMVDALLYSGSI 145
TAM+ L SG++
Sbjct: 659 TAMISGLAKSGNV 671
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 44/224 (19%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T N VI+ ++ ++++AYQ+LE ++ G P ++Y ++ K +LD
Sbjct: 478 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYML 537
Query: 74 NEQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRH 105
E+ K NG ++ G P+++T+ LL G
Sbjct: 538 FEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVK 597
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
A+++ L MK + T + +L +G KV +F + +++
Sbjct: 598 AEEINEALVCFQSMKDL------KCTPNQITYCILINGLCKVRKFNKAFVFWQEMQK--- 648
Query: 166 NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW-----PDST 204
GL P Y +M+ LA + S + R PDS
Sbjct: 649 -QGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSA 691
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
+ + ++ N I+ + ++D A++ ++ GL PD ++Y ++ K +LD +
Sbjct: 127 FDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAV 186
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLE 114
EQ++ N Q P + Y T++MG+ A SLLE
Sbjct: 187 EIFEQMEQNRQV-------PCAYAYNTMIMGYGSAGKFDEAYSLLE 225
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTM 71
+++N ++ +I R+D A +L+ ++ + D + YN+ I K K+D+
Sbjct: 92 YEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAW 151
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
F ++K N G PD TY +++ A L +EI +M+
Sbjct: 152 KFFHEMKAN-------GLVPDDVTYTSMMGVLCKANRLDEAVEIFEQME 193
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFN 74
N +V +A+I +A+++D A ++L ++K PD+++YNILI K+ ++ F
Sbjct: 339 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 398
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+++ + G K PD++TY L+ GF A + + + +M S
Sbjct: 399 DEMLEAGCK-------PDVYTYNILVSGFCKAGNTDAACGVFDDMSS 438
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
A+++ + ++I +A ++E + G P +YN L++ K +L+ + ++ D
Sbjct: 169 TAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD 228
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
NG C+ PD+ TY +L+ G K ++ EM + L+LD +TA++ L
Sbjct: 229 NG--CT-----PDVVTYTSLIDGLGKEKRSFEAYKLFKEM-ALRGLVLDTVCYTALIRGL 280
Query: 140 LYSGSI 145
L +G I
Sbjct: 281 LQAGKI 286
>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
++ A+++ EA + E + GL+ D YN LI K+K++ +++K NG
Sbjct: 219 IVRRYARARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNG 278
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
+ F PD+ TY L+ G+ H KDL L + EM L D + ++ +
Sbjct: 279 R------FVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLD-AGLQPDVVAYGMLISSFCK 331
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
SG A+ +F E+ G P PH+Y +++ L + D
Sbjct: 332 SGKCD----EAIKVFREM-----ETNGCMPSPHVYCMLINGLGSEERLD 371
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 31/206 (15%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
E+ + + NAV+ A + + A+++++ + K G+ P+S +Y+I++ IK+
Sbjct: 378 ELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKS 437
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+K+ E+ + Q S G P + TY ++ F + + L++ +MK
Sbjct: 438 QKI-------EEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKE-KG 489
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY-------- 176
++ F+A+++ L + ++ Y F E++ R G+ P L+
Sbjct: 490 VLPCMHMFSALINGLCFENRLEEACAY----FQEMLDR-----GIRPPGQLFSNLKEALI 540
Query: 177 ----VSMMHELAARVDYDIVKSPYRR 198
+S+ E+A ++D ++ K+P RR
Sbjct: 541 EGGRISLAQEMALKLD-ELRKTPMRR 565
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 33 IDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
+ YQ E ++ GL+PD ++Y +LIS+ K+ K D + +++ NG C P
Sbjct: 303 LKSVYQ--EMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNG--C-----MPS 353
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
Y L+ G + L L+ FE+ ++ T A+V A S + +A
Sbjct: 354 PHVYCMLINGLGSEERLDEALKY-FELSKASGFPMEVPTCNAVVGAYCRSSKFQ----HA 408
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+ E+ K G+ P Y ++H L
Sbjct: 409 FKMVDEMRKS-----GIGPNSRTYDIILHHL 434
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
N + + +I E ++ EA + E + + + PD+L+YNILI+ + K+D
Sbjct: 225 NLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTI 284
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E +K NG CS P++F Y+ L+ G+ LQ E+ E+KS + D ++T
Sbjct: 285 LEFMKSNG--CS-----PNVFNYSVLMNGYCKEGRLQEAKEVFNEIKS-LGMKPDTISYT 336
Query: 134 AMVDALLYSGSI 145
+++ L +G +
Sbjct: 337 TLINCLCRTGRV 348
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 29 EAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86
E+ R+D A ++L + L P++ +NIL+ + L +++K S+
Sbjct: 166 ESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMK------SA 219
Query: 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+P++ TY+TL+ G L+ +E EM S N++ D T+ +++ G +
Sbjct: 220 RVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKV 278
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 32 RIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+ EA ++ ++ G++PD++SY LI+ +T ++D +Q+KD + C +
Sbjct: 312 RLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKD--KDCRA---- 365
Query: 91 PDIFTYATLLMGF----RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
D T+ +L G R + L + ++ FE L++ ++ +++ L G ++
Sbjct: 366 -DTVTFNVMLGGLCREGRFDEALDMVQKLPFE-----GFYLNKGSYRIVLNFLTQKGELR 419
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N V+ +A R+++A ++ E +GL PD +SYN L+S K L + +
Sbjct: 226 VTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAE 285
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ QK G PD+ T+ +L+ A +L+ + +V +M+ L ++ TFTA++
Sbjct: 286 M---AQK----GVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRE-RGLRMNEFTFTALI 337
Query: 137 DALLYSG 143
D +G
Sbjct: 338 DGFCRNG 344
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 30/160 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I + R+DEA +++ +E KG++PD ++Y+ ++S K D N
Sbjct: 364 SVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELN 423
Query: 75 EQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRHA 106
++ G +K G PD FTY TL+ G
Sbjct: 424 RKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKE 483
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
++Q L + EM ++ D T++ ++D L S K
Sbjct: 484 GNVQKALSLHDEMIK-KGVLPDVVTYSVLIDGLSKSARTK 522
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
++N A+I+ +D+A ++ + E ++P + YN+LI+ K ++D
Sbjct: 327 RMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARE 386
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++ G K PD+ TY+T+L G+ D S E+ +M ++ D T+
Sbjct: 387 LIHEMEAKGMK-------PDVVTYSTILSGYCKIGDTDSAFELNRKMLK-KGVVPDAITY 438
Query: 133 TAMVDAL 139
++++ L
Sbjct: 439 SSLIRGL 445
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
FE N + ++ + I +++I E +R+ +A ++ E ++ GL+PD +Y LI
Sbjct: 420 FELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDG 479
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K + + ++++ G PD+ TY+ L+ G + + ++F++
Sbjct: 480 HCKEGNVQKALSLHDEMIKKG-------VLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N VI + + +A ++ E V++G+ P+ ++YN +I +K L+ +Q+
Sbjct: 199 NVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQ 258
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G+K P++ TY LL G A + ++ EM S +++ D T++ + D L
Sbjct: 259 DGRK-------PNVVTYNVLLSGLCRAGRMDETRALMDEMTS-YSMLPDGFTYSILFDGL 310
Query: 140 LYSGSIKVVGLYALCIFGEIVKR 162
+G + + L +FGE +K+
Sbjct: 311 TRTGDSRTM----LSLFGESLKK 329
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N V N++I+A E+ ++A+ ++E ++ G+ +YN+L+ K ++D
Sbjct: 509 NAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEA---- 564
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E+L N ++ G PD+ +Y T++ + D LE++ EM
Sbjct: 565 EELIYN---LTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEM 606
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 32/160 (20%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD 68
++ K N + N ++ A R+DE ++ E + PD +Y+IL +T
Sbjct: 258 QDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSR 317
Query: 69 VTMP-FNEQLKD-------------NGQKCSSG---------------GFHPDIFTYATL 99
+ F E LK NG C G G P Y TL
Sbjct: 318 TMLSLFGESLKKGVIIGAYTCSILLNGL-CKDGKVAKAEQVLEMLVHTGLVPTTAIYNTL 376
Query: 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ G+ +DLQ I +MKS ++ D T+ A+++ L
Sbjct: 377 INGYCQVRDLQGAFSIFEQMKS-RHIRPDHITYNALINGL 415
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+++ +++ R A + A+ +L V G PD+ ++N + AC+ LD + L
Sbjct: 128 LLLESLLSVGRHAD-VRAAFGLL--VAAGARPDTFAWNKAVQACVAAGDLDEALAM---L 181
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS------T 131
+ G+ S G PD F+Y ++ G + L++ EM +DR T
Sbjct: 182 RRMGR--SEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEM-------VDRGVAPNQIT 232
Query: 132 FTAMVDALLYSGSIKV 147
+ M+D + G ++
Sbjct: 233 YNTMIDGHVKGGDLEA 248
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+A +A +DEA Q+L E EK + P+ ++++ +I+ +K LD +
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYK 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K+ G +P++ TY TL+ GF + + LE+ +M C + +++ +
Sbjct: 438 RMMKERG-------INPNVVTYGTLIDGFFKFQGQDAALEVYHDML-CEGVKVNKFIVDS 489
Query: 135 MVDALLYSGSIK 146
+V+ L +G I+
Sbjct: 490 LVNGLRQNGKIE 501
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I N ++ +++A Y + E V G P SL++ ++ AC ++++LDV +
Sbjct: 621 KPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILD 680
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
+E + + G H DI Y TLL
Sbjct: 681 IHEWMMN-------AGLHADITVYNTLL 701
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK-TKKLDVTMPF 73
N N ++ RI EA +L +EK GLEP++L+Y+IL + K + K++ +
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLY 822
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E + GF P + TY L+ F A + E+ +M+
Sbjct: 823 CEMVGK--------GFVPKVSTYNALISDFTKAGMMTQAKELFKDMQ 861
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTI +++I + R+DEA Q+ +S+ K PD +++N L+S K ++D +
Sbjct: 539 NTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGL--- 595
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + G++ G D TY TL+ GFR ++ L+I EM S
Sbjct: 596 ELFCEMGRR----GIVADAITYITLIHGFRKVGNINGALDIFQEMIS 638
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I A + ++ EA ++ E + +G+ P++++YN +I K +LD
Sbjct: 318 NVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMF 377
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G CS PD+FT+ TL+ G+ AK + E++ EM L+ D +T+
Sbjct: 378 YVMATKG--CS-----PDVFTFNTLIDGYCGAKRIDDGTELLHEMTE-TGLVADTTTYNT 429
Query: 135 MVDALLYSGSI 145
++ G +
Sbjct: 430 LIHGFCLVGDL 440
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 16/222 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N +I+ A+RID+ ++L E E GL D+ +YN LI L+ + +
Sbjct: 388 DVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLS 447
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ S G PDI T TLL G L+ LE+ M+ + LD S
Sbjct: 448 QQM-------ISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK-SKMDLDASRPFN 499
Query: 135 MVDALLYSGSIKVVGLYALCIF--GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
V+ + + +I + GL F E + + + G+ P Y SM++ L + D
Sbjct: 500 GVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEA 559
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+ M S SP+V + L+ G+VD L+
Sbjct: 560 TQMFDSMGSKS---FSPDVV--TFNTLVSGYCKAGRVDDGLE 596
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 21 NAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N V+ +A++ID+A ++ LE G EP +SYN +IS K+D F + D
Sbjct: 24 NIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMID 83
Query: 80 NGQK-------------CSSGG--------------FHPDIFTYATLLMGFRHAKDLQSL 112
NG + C +G F PD+F Y +++ G+ A DL +
Sbjct: 84 NGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTG 143
Query: 113 LEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+I+ EM + I D + + ++D L G +
Sbjct: 144 FKILEEMLA-AGCIPDAAAYFVLIDPLCKLGRV 175
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 22/228 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +I+ + ++ A +ILE + K G+ PD +YN L+ +K +++D
Sbjct: 607 DALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVY 666
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G P+ T+ L+ G + EM + ++T
Sbjct: 667 DRM-------VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTI 719
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++D L +G + A F E++ R G+ P+ H Y S+++ LA K
Sbjct: 720 LIDGLGKAGRVS----EAFSQFQEMIDR-----GIIPECHTYTSLIYSLAKAGRIPEAKK 770
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
M ++P+VQ A L+ ++ VD A D + R
Sbjct: 771 LVEDMVKLG---VNPDVQ--AYSALITGLIDSSMVDTAWDVFQEMMKR 813
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 3 EENEI---VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILI 58
E NEI V + + + N++++ + R+D+ ++L + VE PD +YNIL+
Sbjct: 247 EANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILV 306
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ + +LD + + L SS G P+ TY T++ G A+ ++ E
Sbjct: 307 AGFSRANRLDDALELFKLL-------SSYGCKPNAATYTTIIQGLYDAQRME-------E 352
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSI 145
K+ + LD ++T ++ L S I
Sbjct: 353 AKAFFDEALDVISYTTVIKGLADSKRI 379
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 23 VIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
VI+ +AQ + +A ++ E V+KG PD+++Y LI K K+D + + G
Sbjct: 439 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 498
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ P TY +++ GF + E++ +M+
Sbjct: 499 PE-------PTAVTYGSIVHGFCKLDMINEAKEVIAQMR 530
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+A +A +DEA Q+L E EK + P+ ++++ +I+ +K LD +
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYK 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K+ G +P++ TY TL+ GF + + LE+ +M C + +++ +
Sbjct: 438 RMMKERG-------INPNVVTYGTLIDGFFKFQGQDAALEVYHDML-CEGVKVNKFIVDS 489
Query: 135 MVDALLYSGSIK 146
+V+ L +G I+
Sbjct: 490 LVNGLRQNGKIE 501
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I N ++ +++A Y + E V G P SL++ ++ AC ++++LDV +
Sbjct: 621 KPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILD 680
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
+E + + G H DI Y TLL
Sbjct: 681 IHEWMMN-------AGLHADITVYNTLL 701
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK-TKKLDVTMPF 73
N N ++ RI EA +L +EK GLEP++L+Y+IL + K + K++ +
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLY 822
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E + GF P + TY L+ F A + E+ +M+
Sbjct: 823 CEMVGK--------GFVPKVSTYNALISDFTKAGMMTQAKELFKDMQ 861
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LNTI N++I++ + R+ E+ ++ + V G++PD ++YN LI C K+D
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 538
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ S G PDI TY TL+ G+ + L + EM S
Sbjct: 539 LASM-------VSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS 579
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
+++ R K + I N +I+ A ++DEA ++L S V G++PD ++Y LI+ +
Sbjct: 505 DLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 564
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
++D + +++ S G P+I TY +L G H + + E+
Sbjct: 565 SRMDDALALFKEM-------VSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N +I A + +++D+A + + + GL P+ + Y +I K+ +D M + EQ+
Sbjct: 378 VFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM 437
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRSTFTA 134
D G P+I Y +L+ G E++ EM C N I F +
Sbjct: 438 IDE-------GLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIF----FNS 486
Query: 135 MVDALLYSGSI 145
++D+ G +
Sbjct: 487 IIDSHCKEGRV 497
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N V+ + D+AY E +++G+ PD ++Y+ +I+A K + +D M
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ N G PD TY ++L G+ + + + + +M+S + + T+++
Sbjct: 260 NTMVKN-------GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS-DGVEPNVVTYSS 311
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+++ L +G A IF + KR GL P Y +++ A +
Sbjct: 312 LMNYLCKNGR----STEARKIFDSMTKR-----GLEPDIATYRTLLQGYATK 354
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTK 65
V ++ ++++ I +++ +R +A I+ E G PD SYN L+
Sbjct: 118 VVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDEN 177
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ + + D+ GG PD+ +Y T+L GF D EM +
Sbjct: 178 RSQEALELLHMMADD----RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLD-RGI 232
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ D T+++++ AL + ++ A+ + +VK G+ P Y S++H
Sbjct: 233 LPDVVTYSSIIAALCKAQAMD----KAMEVLNTMVKN-----GVMPDCMTYNSILH 279
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LNTI N++I++ + R+ E+ ++ + V G++PD ++YN LI C K+D
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 538
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ S G PDI TY TL+ G+ + L + EM S
Sbjct: 539 LASM-------VSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS 579
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
+++ R K + I N +I+ A ++DEA ++L S V G++PD ++Y LI+ +
Sbjct: 505 DLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 564
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
++D + +++ S G P+I TY +L G H +
Sbjct: 565 SRMDDALALFKEM-------VSSGVSPNIITYNIILQGLFHTR 600
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N +I A + +++D+A + + + GL P+ + Y +I K+ +D M + EQ+
Sbjct: 378 VFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM 437
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRSTFTA 134
D G P+I Y +L+ G E++ EM C N I F +
Sbjct: 438 IDE-------GLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIF----FNS 486
Query: 135 MVDALLYSGSI 145
++D+ G +
Sbjct: 487 IIDSHCKEGRV 497
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N V+ + D+AY E +++G+ PD ++Y+ +I+A K + +D M
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ N G PD TY ++L G+ + + + + +M+S + + T+++
Sbjct: 260 NTMVKN-------GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS-DGVEPNVVTYSS 311
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+++ L +G A IF + KR GL P Y +++ A +
Sbjct: 312 LMNYLCKNGR----STEARKIFDSMTKR-----GLEPDIATYRTLLQGYATK 354
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTK 65
V ++ ++++ I +++ +R +A I+ E G PD SYN L+
Sbjct: 118 VVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDEN 177
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ + + D+ GG PD+ +Y T+L GF D EM +
Sbjct: 178 RSQEALELLHMMADD----RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLD-RGI 232
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ D T+++++ AL + ++ A+ + +VK G+ P Y S++H
Sbjct: 233 LPDVVTYSSIIAALCKAQAMD----KAMEVLNTMVKN-----GVMPDCMTYNSILH 279
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 72/231 (31%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +++I A +AQ +D+A ++L + V+ G+ PD ++YN ++ + + +
Sbjct: 235 DVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL 294
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
++++ +G + C +G G PDI TY TLL G+
Sbjct: 295 KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATK 354
Query: 107 K---DLQSLLEI-----------VFEMKSCC--------------------NLILDRSTF 132
++ +LL++ VF + C L + +
Sbjct: 355 GALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCY 414
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++D L SGS+ LY F +++ + GL P +Y S++H L
Sbjct: 415 GTVIDVLCKSGSVDDAMLY----FEQMI-----DEGLTPNIIVYTSLIHGL 456
>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 35/211 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+++ +DEA ++ ++ V KG P+ SYNILI+ + +++D M
Sbjct: 394 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 453
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ+ S G D TY TL+ G H LQ + + EM + I D T+
Sbjct: 454 EQM-------SLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVA-SGQIPDLVTYRI 505
Query: 135 MVDALLYS--------------GS-------IKVVGLYALCIFGEI--VKRVCSN---PG 168
++D L + GS + + + +C GE+ + + SN G
Sbjct: 506 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG 565
Query: 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
L P Y M+H L R D +R+M
Sbjct: 566 LQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 596
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQL 77
+N +I + +R+ A+ +L + K G +PD+ ++N LI C++ K + F++ +
Sbjct: 188 LNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 247
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC-CNLILDRSTFTA 134
+ GF PD+ TY TL+ G + + + ++ M K+C N+I +
Sbjct: 248 GE--------GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVI----AYNT 295
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++D+L + A +F E++ + G+ P Y S++H L ++ V +
Sbjct: 296 IIDSLCKDRQVT----EAFNLFSEMITK-----GISPDIFTYNSLIHALCNLCEWKHVTT 346
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
M I P V + +++A +G + +A D + I R
Sbjct: 347 LLNEMV---NSKIMPNVVVFS--TVVDALCKEGMIAIAHDVVDMMIKR 389
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 81/158 (51%), Gaps = 16/158 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CI 62
NE+VN + N +V + V++A + I A+ +++ +++G+EPD ++Y L+ C+
Sbjct: 349 NEMVNSKIMP-NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL 407
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+++ + F+ + G P++ +Y L+ G+ + + + ++ +M S
Sbjct: 408 RSEMDEAVKVFDTMVHK--------GCVPNVRSYNILINGYCQIQRMDKAMGLLEQM-SL 458
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
LI D T+ ++ L + G ++ +A+ +F E+V
Sbjct: 459 QGLIADTVTYNTLIHGLCHVGRLQ----HAIALFHEMV 492
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +V N I+ A ++ A + ++ KGL+PD +YNI+I K LD
Sbjct: 534 DILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLF 593
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +NG CS G Y T++ GF + + +++ EM + D ST T
Sbjct: 594 RKMDENG--CSRDG-----CIYNTIIRGFLRSNETFGATQLLQEMLA-EGFSADVSTTTL 645
Query: 135 MVDAL 139
+V+ L
Sbjct: 646 IVEML 650
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +++GL P+ ++Y LIS K +KLD E++K +G + P++ TY L+
Sbjct: 530 EMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCR-------PNVQTYNVLI 582
Query: 101 MGFRHAKDL---QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157
G + + L +++ E K + D T++ +++ L +G+I + AL +F
Sbjct: 583 HGLTKQNNFSGAEELCKVMLEEK----ISPDVVTYSTVINGLCNNGAIPL----ALEMFN 634
Query: 158 EIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGH 217
++VK C P H Y S++ L + + + + G I EV
Sbjct: 635 KMVKHGC-----LPNLHTYSSLIQALGQEGRVEEAEEMFSEL--KKQGLIPDEVTYVK-- 685
Query: 218 LLMEAALNDGQVDLALDKLSNTI 240
++E + G+VD A D L I
Sbjct: 686 -MIEVCVMSGKVDRAFDFLGEMI 707
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 33 IDEAYQILESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLKDNGQKCSSGGFHP 91
+D +QIL +GL+P+ L YN +I+A K + D N+ K G P
Sbjct: 213 MDRYHQILR---EGLQPNLLIYNSVINALCKDGNVRDAESIINKVFK--------SGMKP 261
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
D FTY ++++G+ +DL S EI M + C + +T++ +++ L SG +
Sbjct: 262 DTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCE--PNAATYSTLINGLCNSGRVN---- 315
Query: 151 YALCIFGEIVKRVCSNPGLWPKPHLYVS 178
AL E+ + G+ P H + +
Sbjct: 316 EALDFISEMTRH-----GVLPTVHTFTA 338
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
RE + N ++ N+VI A + + +A I+ V K G++PD+ +Y +I + + LD
Sbjct: 221 REGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLD 280
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
++ + G C P+ TY+TL+ G ++ + L+ + EM ++
Sbjct: 281 SAFEIFNRMDEEG--C-----EPNAATYSTLINGLCNSGRVNEALDFISEMTR-HGVLPT 332
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
TFTA + AL G I+ A IF ++ K+ C KP++Y
Sbjct: 333 VHTFTAPIVALCDMGRIE----DAWKIFIDMKKKGC-------KPNVYT 370
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +++I+A + R++EA ++ ++K GL PD ++Y +I C+ + K+D F
Sbjct: 644 NLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFL 703
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
++ + G P + TY L+ G ++
Sbjct: 704 GEMIN-------AGCQPTLQTYDVLIKGLQN 727
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIK 63
NE+V R +TI +++I+ + R+ EA Q+L+ V KG EP+ ++Y+ILI++ K
Sbjct: 338 NEMVAR-GIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCK 396
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++D M ++ SS G D TY TL+ GF + L E+ EM S
Sbjct: 397 AKRVDNGMRLFCEI-------SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVS 447
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
IFE+ + + L + N +I A ++D+A+ + S+ KG++PD L+YN++I
Sbjct: 476 IFEK---MQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIG 532
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L ++K++G C+ P TY L+ + S +E++ EM
Sbjct: 533 GLCKKGSLSEADMLFRKMKEDG--CA-----PSDCTYNILIRAHLGGSGVISSVELIEEM 585
Query: 120 K 120
K
Sbjct: 586 K 586
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ + +R DEA+ L S+ KGLEP+ +++N++I+ + +L T +
Sbjct: 17 NVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKET---S 73
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L + +K G+ PD TY TL+ G+ + L + EM L + T+T+
Sbjct: 74 EVLVEMSRK----GYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR-NGLSPNVVTYTS 128
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+++++ +G++ A+ F ++ R GL P Y ++++ A +
Sbjct: 129 LINSMCKAGNLN----RAMEFFDQMHVR-----GLCPNERTYTTIINGFAQQ 171
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I R+ E ++L E KG PD ++YN L++ K + +
Sbjct: 52 NLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLH 111
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ N G P++ TY +L+ A +L +E F+ L + T+T
Sbjct: 112 AEMVRN-------GLSPNVVTYTSLINSMCKAGNLNRAMEF-FDQMHVRGLCPNERTYTT 163
Query: 135 MVDALLYSG 143
+++ G
Sbjct: 164 IINGFAQQG 172
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 22 AVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
+I + +DEAY++L E G P ++YN LI+ +++ + L+D
Sbjct: 163 TIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGL---LQDM 219
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDA 138
K G PD+ +Y+T++ GF ++L ++ EM KS ++ D T+++++
Sbjct: 220 VGK----GVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKS---VLPDAVTYSSLIQG 272
Query: 139 L 139
L
Sbjct: 273 L 273
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 21 NAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+ +I Q +D A+Q+ +E + K + PD+++Y+ LI + ++L + D
Sbjct: 232 STIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRL-------TEACD 284
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
Q+ + PD FTY TL+ + DL L + EM + D T+ +++ L
Sbjct: 285 MFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQ-KGFLPDAVTYNVLINGL 343
>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
Length = 981
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK 63
NE+ + +L+ I N +I+ +R+++A + E ++ G++P+ +S+N L+ +C+K
Sbjct: 416 NEMKQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVK 475
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR----HAKDLQSLLEIVFEM 119
K+++ + E+++ G PD FTY+ L+ G + + +L + ++ ++
Sbjct: 476 CNKMNIAWRYFEEMR------KQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQI 529
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIK 146
+ D + +++DA + I+
Sbjct: 530 QETGQFKPDEILYNSLIDACVKFNEIQ 556
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 36 AYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95
A+ + E ++ +PD + YN L+ ACI L+ ++K S D T
Sbjct: 377 AFSLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMK------QSQTIQLDEIT 430
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
Y TL+ G K L L + EMK + +R +F +++D+ + + + Y
Sbjct: 431 YNTLIKGCGRKKRLNDALNLFEEMK-LIGIKPNRISFNSLLDSCVKCNKMNIAWRY---- 485
Query: 156 FGEIVKRVCSNPGLWPKPHLY 176
F E+ K+ G++P Y
Sbjct: 486 FEEMRKQY----GIFPDNFTY 502
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFN 74
+I++N + + A +LE +++ +PD + YN LI AC+K ++ M
Sbjct: 503 SILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELF 562
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K+ P TY L+ + DL +I EMK + ++ T+
Sbjct: 563 REMKN-------KQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQ-KKIPINDVTYGC 614
Query: 135 MVDA 138
+VDA
Sbjct: 615 LVDA 618
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEP-DSLSYNILISACIKTKKLDVTMPFNE 75
++ +I+A + ++ A++I E +++ P + ++Y L+ AC++ +LD + F +
Sbjct: 574 SVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFID 633
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+K S + Y T++ GF + ++ MK + T+ ++
Sbjct: 634 QMK-------SQNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSPKTYPNLITYNSL 686
Query: 136 VDALLYSG 143
+D ++ +G
Sbjct: 687 LDGMVKNG 694
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
++ A+++ EA + E + GL+ D YN LI K+K++ +++K NG
Sbjct: 201 IVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNG 260
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
+ F PD+ TY L+ G+ H KDL L + EM + D + ++ +
Sbjct: 261 R------FVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLD-AGIKPDVVAYGTLISSFCK 313
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
SG A+ +F E+ C P PH+Y +++ L + D
Sbjct: 314 SGKCD----EAIKVFREMEANGC-----MPSPHVYCMLINGLGSEERLD 353
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 29/226 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I R D +I + + KG++PD ++YN LI+ K L
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLV 388
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ G K PD FTY L+ G DL+S LEI EM + LD FTA
Sbjct: 389 IEMTQRGLK-------PDKFTYTMLIDGCCKEGDLESALEIRKEMVK-EGIELDNVAFTA 440
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ G + I E R G+ P Y ++H + D
Sbjct: 441 LISGFCREGQV---------IEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491
Query: 195 PYRRMWPDS--TGTISPEV---------QEEAGHLLMEAALNDGQV 229
+ M D G ++ V Q + ++L++A LN G V
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVV 537
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLD 68
R+ K + I N +I + + EA + ++E ++GL+PD +Y +LI C K L+
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417
Query: 69 VTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTYATLL 100
+ +++ G + C G G PD TY ++
Sbjct: 418 SALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
GF D+++ +++ EM+ C + T+ +++ L G +K
Sbjct: 478 HGFCKKGDVKTGFKLLKEMQ-CDGHVPGVVTYNVLLNGLCKQGQMK 522
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N ++ + +I+EA + + ++GL P +S+N LI+ K+ LD +
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN--LILDRSTFTAMV 136
+N PD+FTY+ L+ G L ++ EM C+ L+ + TFT ++
Sbjct: 288 EN-------RVFPDVFTYSVLINGLCKEGQLDDANKLFLEM---CDRGLVPNDVTFTTLI 337
Query: 137 DALLYSG 143
+ +G
Sbjct: 338 NGHCVTG 344
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 33/171 (19%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE +LN ++ +++I+ + RIDEAY I+E + +KGL P+ ++N L+
Sbjct: 674 LFEE---AKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 730
Query: 60 ACIKTKKLDVTMPFNEQLKD--------------NG--------------QKCSSGGFHP 91
A +K ++++ + + +K+ NG Q+ G P
Sbjct: 731 ALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKP 790
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142
+ TY T++ G A ++ + FE + D +++ A+++ L YS
Sbjct: 791 NTITYTTMIAGLAKAGNIAEASSL-FERFKANGGVPDSASYNAIIEGLSYS 840
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T N I+ ++ ++++AYQ+LE ++ KG +P ++Y +I K +LD
Sbjct: 615 LDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYML 674
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+ K N G ++ Y++L+ GF + I+ E+ L + T+
Sbjct: 675 FEEAKSN-------GLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQ-KGLTPNVYTWN 726
Query: 134 AMVDALLYSGSI 145
++DAL+ + I
Sbjct: 727 CLLDALVKAEEI 738
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ ++ N I+ +A ++D A++ ++ GL PD ++Y +I K +LD +
Sbjct: 267 DIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIF 326
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLE 114
EQ++ N P + Y T++MG+ A SLLE
Sbjct: 327 EQMEQNRNV-------PCAYAYNTMIMGYGSAGKFDEAYSLLE 362
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N ++ + R+ EA + E ++K P+ +YN+LI K +++ +
Sbjct: 372 SVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRD 431
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+K+ G P++ T ++ AK L I M K C D TF
Sbjct: 432 AMKE-------AGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSP---DEVTFC 481
Query: 134 AMVDALLYSGSI 145
+++D L G +
Sbjct: 482 SLIDGLGKQGRV 493
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 88/162 (54%), Gaps = 20/162 (12%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CI 62
NE+VN + N ++ + V++A + ++ EA+ +++ +++G+EP+ ++YN L+ C+
Sbjct: 258 NEMVNSKIMP-NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 316
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+++ + F+ + GF PD+ +Y+TL+ G+ + ++ + + EM
Sbjct: 317 RSEMDEAVKVFDTMV--------CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM--- 365
Query: 123 CN--LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
C LI + T++ ++ L + G ++ A+ +F E+V R
Sbjct: 366 CRKELIPNTVTYSTLMHGLCHVGRLQ----DAIALFHEMVTR 403
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N +N +I + QR+ A+ +L + K G +P+ ++N LI C++ K +V F
Sbjct: 93 NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLF 152
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ + + GF P++ TY TL+ G + + ++ M+ N D +T
Sbjct: 153 DKMIGE--------GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ-GNCQPDVVVYT 203
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
+++D+L + A +F E++ + G+ P Y S++H L ++ V
Sbjct: 204 SIIDSLCKDRQVT----QAFNLFSEMIHQ-----GISPSIFTYNSLIHALCNLCEWKHVT 254
Query: 194 SPYRRM 199
+ M
Sbjct: 255 ALLNEM 260
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 31 QRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
+R+DEA +L+++E ++PD Y I+I + +L E +D SS G
Sbjct: 423 RRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGEL-------EAARDLFSNLSSKGL 475
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
HP+++TY ++ G L ++ EMK
Sbjct: 476 HPNVWTYTIMINGLCQQGLLAEASKLFGEMK 506
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE + R+ NT+ + ++ R+ +A + E V +G PD +SY IL+
Sbjct: 361 LFEE---MCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLD 417
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K ++LD + + ++ + PDI Y ++ G A +L++ ++ F
Sbjct: 418 YLCKNRRLDEAIALLKAIEGSNMD-------PDIQIYTIVIDGMCRAGELEAARDL-FSN 469
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
S L + T+T M++ L G + A +FGE+ ++
Sbjct: 470 LSSKGLHPNVWTYTIMINGLCQQGLLA----EASKLFGEMKRK 508
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 35/200 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+ + ++ +D A ++L E KGL+ + +YN +++ K + +
Sbjct: 319 NVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLM 378
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS---- 130
E++K+ G HPD TY TL+ + ++ E++ EM LDR
Sbjct: 379 EEMKE-------AGLHPDTITYTTLMDAYYKTGEMVKARELLREM-------LDRGLQPT 424
Query: 131 --TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
TF +++ L SG ++ GE + + G+ P Y S+M + R +
Sbjct: 425 VVTFNVLMNGLCMSGKLED---------GERLLKWMLEKGIMPNAATYNSIMKQYCIRNN 475
Query: 189 YDIVKSPYRRMW-----PDS 203
I YR M PDS
Sbjct: 476 MRISTEIYRGMCAQGVVPDS 495
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
++I +A+I + ++ EA ++ E ++KG EPD ++Y LI K ++ +
Sbjct: 249 DSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLH 308
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC--NLILDRSTF 132
Q+ G P++ TY L G + +L + E++ EM C L L+ ST+
Sbjct: 309 NQM-------VQIGLTPNVVTYTALADGLCKSGELDTANELLHEM---CRKGLQLNISTY 358
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+V+ L +G+I L A+ + E+ GL P Y ++M
Sbjct: 359 NTIVNGLCKAGNI----LQAVKLMEEM-----KEAGLHPDTITYTTLM 397
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 39/194 (20%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT N ++ + +I EA+ +L +E KG PD +SY +I +L +
Sbjct: 109 NTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLV 168
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
++++ G K C SG G PD Y TL+ GF
Sbjct: 169 KEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKL 228
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
+ Q+ ++ EM++ ++ D F+A++ L SGS KVV A +F E++K+
Sbjct: 229 GNTQAAYKLFSEMEA-REIVPDSIAFSALICGL--SGSGKVVE--ADKLFNEMIKK---- 279
Query: 167 PGLWPKPHLYVSMM 180
G P Y +++
Sbjct: 280 -GFEPDEVTYTALI 292
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 88/162 (54%), Gaps = 20/162 (12%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CI 62
NE+VN + N ++ + V++A + ++ EA+ +++ +++G+EP+ ++YN L+ C+
Sbjct: 267 NEMVNSKIMP-NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 325
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+++ + F+ + GF PD+ +Y+TL+ G+ + ++ + + EM
Sbjct: 326 RSEMDEAVKVFDTMV--------CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM--- 374
Query: 123 CN--LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
C LI + T++ ++ L + G ++ A+ +F E+V R
Sbjct: 375 CRKELIPNTVTYSTLMHGLCHVGRLQ----DAIALFHEMVTR 412
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N +N +I + QR+ A+ +L + K G +P+ ++N LI C++ K +V F
Sbjct: 102 NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLF 161
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ + + GF P++ TY TL+ G + + ++ M+ N D +T
Sbjct: 162 DKMIGE--------GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ-GNCQPDVVVYT 212
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
+++D+L + A +F E++ + G+ P Y S++H L ++ V
Sbjct: 213 SIIDSLCKDRQVT----QAFNLFSEMIHQ-----GISPSIFTYNSLIHALCNLCEWKHVT 263
Query: 194 SPYRRM 199
+ M
Sbjct: 264 ALLNEM 269
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 31 QRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
+R+DEA +L+++E ++PD Y I+I + +L E +D SS G
Sbjct: 432 RRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGEL-------EAARDLFSNLSSKGL 484
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
HP+++TY ++ G L ++ EMK
Sbjct: 485 HPNVWTYTIMINGLCQQGLLAEASKLFGEMK 515
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE + R+ NT+ + ++ R+ +A + E V +G PD +SY IL+
Sbjct: 370 LFEE---MCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLD 426
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K ++LD + + ++ + PDI Y ++ G A +L++ ++ F
Sbjct: 427 YLCKNRRLDEAIALLKAIEGSNMD-------PDIQIYTIVIDGMCRAGELEAARDL-FSN 478
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
S L + T+T M++ L G + A +FGE+ ++
Sbjct: 479 LSSKGLHPNVWTYTIMINGLCQQGLLA----EASKLFGEMKRK 517
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 38/246 (15%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN ++ N VI ++ EA ++ E++ KG +PD+ +Y+IL+ K ++ +
Sbjct: 308 ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVR 367
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDR 129
+++ GF P++ TY +L F D ++LLE EM S L L+
Sbjct: 368 LLREMEKK-------GFAPNVVTYTIVLHSFCKNGMWDDTRALLE---EM-SAKGLTLNS 416
Query: 130 STFTAMVDALLYSGSI-KVVGLYA----------LCIFGEIVKRVCSNPGLWPKPHLYVS 178
+ M+ AL G + + +GL +C + I+ +C+N + H++ +
Sbjct: 417 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 476
Query: 179 MMHE--LAARVDYDIVKSPYRR--MWPDSTGTISPEVQEEAGHL-------LMEAALNDG 227
++ E +A + Y+ + R W D+ ++ E+ L L++A DG
Sbjct: 477 LLEEGVVANGITYNTIIHALLRDGRWQDAV-RLAKEMILHGCSLDVVSYNGLIKAMCKDG 535
Query: 228 QVDLAL 233
VD +L
Sbjct: 536 NVDRSL 541
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + N +I+A + +D + +LE + EKG++P+++SYNILIS K +++ +
Sbjct: 519 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALEL 578
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLL-----MGFRHA 106
++Q+ + G PDI TY TL+ MG+ HA
Sbjct: 579 SKQMLNQ-------GLAPDIVTYNTLINGLCKMGWMHA 609
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N +I + +R+ +A ++ + + +GL PD ++YN LI+ K + +
Sbjct: 553 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 612
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E+L + HPDI TY L+
Sbjct: 613 LLEKLHNE-------NVHPDIITYNILI 633
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 23/228 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ + +++D A Q LE V +G PD ++YN +++A K K+D +
Sbjct: 155 NSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELL 214
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL SS G P + TY T++ G +E++ EM+ L D T+++
Sbjct: 215 NQL-------SSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRG-KGLKPDVITYSS 266
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L G ++ A+ F ++ G+ P Y S+M L D
Sbjct: 267 LIAGLSREGKVE----EAIKFFHDV-----EGFGVKPNAFTYNSIMFGLCKAQQTDRAID 317
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
M S G EV +L+E N+G AL+ L+ +R
Sbjct: 318 FLAYMI--SKGCKPTEVSYT---ILIEGIANEGLAKEALELLNELCSR 360
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 6 EIVNREHWK---LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISAC 61
E+++R+ K + I +IEA+ + +A ++L+ + +G +PD ++YN+L++
Sbjct: 2 EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K +LD + F + S G P++ T+ +L
Sbjct: 62 CKEGRLDEAIKFLNSM-------PSYGSQPNVITHNIIL 93
>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISAC 61
+ NE++ R N + N++I +DEA ++L V KG P++++YN LI+
Sbjct: 276 QYNEMIQRS-VNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGY 334
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K K++D M + S G D FTY TL G+ A + +++ M S
Sbjct: 335 CKAKRVDDGMKILCVM-------SRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVS 387
Query: 122 CCNLILDRSTFTAMVDALLYSGSI 145
C + D TF ++D L G I
Sbjct: 388 -CGVHPDMYTFNILLDGLCDHGKI 410
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
++ N ++ N +I++ E +++ A +L+ ++K G+ PD ++YN LI+ + V+
Sbjct: 180 YEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSA 239
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
L D + G PD+ T++ L+ D+ + E K N ++ RS
Sbjct: 240 RI---LSDMMRM----GISPDVITFSALI-------DVYGKEGQLLEAKKQYNEMIQRSV 285
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
+V Y+ I + ++ L + V V + G +P Y ++++ A RVD
Sbjct: 286 NPNIVT---YNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVD 341
>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 24/206 (11%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ R +N ++ AQ++DEA +EK G+ P+ ++N L+ A K+K
Sbjct: 127 IMRRQGVVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKN 186
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNL 125
+ EQ+ +G F PD TY+ LL G+ A +L + ++ +M + C
Sbjct: 187 VRKAQEIFEQM--------NGRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQ- 237
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
D T+ MVD+L +G ++ A+ + ++ R C P +Y ++H
Sbjct: 238 -PDIVTYGIMVDSLCKTGRVE----EAVFVVQDMTSRGCQ-----PTTFIYSVLVHTYGV 287
Query: 186 RVDYDIVKSPYRRMWPDSTGTISPEV 211
+ + + + M D I P+V
Sbjct: 288 EMRIEDAVATFLDMQKDG---IVPDV 310
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ +V NA++ A + ++ D A+++++ +E G+ P+S ++NI+++ I K D F
Sbjct: 309 DVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVF 368
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+K +C PD TY ++ F L+ L+ V++ + TF+
Sbjct: 369 RRMIK----RC-----QPDSDTYTMMIKMFCENDRLEMALK-VWKYMRLKQFLPSMHTFS 418
Query: 134 AMVDALLYSGSI 145
+++ L G +
Sbjct: 419 VLINGLCDKGEV 430
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
+E +++ +E + N NA+I+ + R EAY++L ++ GL D ++Y ILIS
Sbjct: 424 YELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISE 483
Query: 61 -CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
C +T F+ K G PD+ TY L+ F K ++ E +FE
Sbjct: 484 FCRQTDNKQALAIFSRMFKV--------GLQPDMHTYNVLIATFCRQKKVEE-SEKLFEE 534
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
L+ + T+T+M+ G I
Sbjct: 535 AVGLGLLPTKETYTSMICGYCRDGHI 560
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 2 FEENEIVNREHWKL----------NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPD 50
F E VNR W N I +++I + I +A+++LE V KG +P+
Sbjct: 273 FSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPN 332
Query: 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
++ LI K + +L S + P+++TY ++ G+ + L
Sbjct: 333 VYTHTALIDGLCKKGWTEKAFRLFLKL------VRSDNYKPNVYTYTCMINGYCKEEKLN 386
Query: 111 SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
++ MK L+ + +T+T ++D +G+
Sbjct: 387 RAEMLLIRMKE-QGLVPNTNTYTCLIDGHCKAGNF 420
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTI N++I+ + R++EA Q+++ + KG +PD +++NILI+ K ++D +
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ S G + TY TL+ GF + L+ ++ EM S + D ++
Sbjct: 427 REM-------SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS-RRVRPDIVSYKI 478
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVK 161
++D L +G ++ AL IFG+I K
Sbjct: 479 LLDGLCDNGELE----KALEIFGKIEK 501
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 21/133 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
V+N + ++ + A A ++L +E + ++ D++ Y+I+I K LD FNE
Sbjct: 234 VLNVMCKSGQTAL----AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRSTFT 133
GF DI TY TL+ GF +A D LL + + K N++ TF+
Sbjct: 290 --------EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVV----TFS 337
Query: 134 AMVDALLYSGSIK 146
++D+ + G ++
Sbjct: 338 VLIDSFVKEGKLR 350
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTK 65
+ + +L+ + +I A ++D+A+ + S+ KG++ D+ +YNI+IS C K
Sbjct: 499 IEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDS 558
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ F +K + G PD TY L+ D + E++ EMKS
Sbjct: 559 LSKADILF--------RKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKS-SGF 609
Query: 126 ILDRSTFTAMVDALLYSGSI 145
D ST MV +L SG +
Sbjct: 610 PADVST-VKMVINMLSSGEL 628
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
W N I + ++ R + EA ++ E ++KG P + N+LI + + +K+D
Sbjct: 446 WIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAK 505
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F EQ C + G ++ + T++ GF DL++ L ++ +M N D T
Sbjct: 506 RFMEQ-------CLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM-YLSNKHPDVVT 557
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
+T ++DAL G I+ A+ + RV G P P Y +++H+
Sbjct: 558 YTTIIDALGKKGRIEEATKLAMKML-----RV----GWIPTPVTYRTVIHQ 599
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N I N +I+ + R+++A +++ + KG PD +SY ++ K K++ ++ +
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLM 297
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ LKD+ PD TY T + LE + E + +D+ ++
Sbjct: 298 EKMLKDS-------NLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEE-RRFRVDKVGYS 349
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
A+V + G + EIV + S G P Y S+++ L D K
Sbjct: 350 AIVHSFCREGRMDKA--------KEIVNEMFSK-GCIPDVVTYTSVINGLCQERKVDQAK 400
Query: 194 SPYRRMW 200
R+M+
Sbjct: 401 KMLRQMY 407
>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Brachypodium distachyon]
Length = 649
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 22/170 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + +V N +I+ QR EA ++ E ++ KG P+ +Y +LI K KLD+ M
Sbjct: 373 KPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMR 432
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRS 130
E+++ G P++ TY LL+G+ +AK + + ++ EM K C D
Sbjct: 433 CFEEMQ-------VAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGC---PPDGR 482
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
T+ A++ L + + + A+ I+ +++ + GL P H Y MM
Sbjct: 483 TYNALIKLL----TNRNMPDDAVRIYKKMITK-----GLEPTIHTYNMMM 523
>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
Length = 643
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N I ++I+ + +D+A ++ E + KG PDS YN+LI A +K + D+ F
Sbjct: 419 VNAIFYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIACAF 478
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSL 112
E+++D+G C ++TY L+ G F+ K+ ++L
Sbjct: 479 YERMEDDG--CDQ-----TVYTYTILIDGLFKEHKNEEAL 511
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I+ +I +A R+D+A+ + S++K G + D+ +YNILI + K+L+
Sbjct: 352 DAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELL 411
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++K+ G PD++TY TLL G A D ++ E++ +M
Sbjct: 412 GEMKE-------AGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKM 449
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKK 66
+ + ++L+ N +I +R++EAY++L E E GL+PD +YN L+S K
Sbjct: 379 MKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGD 438
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ +E L K GG P + T+ TL+ G+ + L I M
Sbjct: 439 F---LAVDELLG----KMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSM 484
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 10/149 (6%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
F E V E + N + + ++ A + A ++ E V++G PD++ Y +IS
Sbjct: 303 FFREKRTVWPEA-RGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMIS 361
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ +LD +K GF D Y L+ GF K L E++ EM
Sbjct: 362 GLTQAGRLDDAWSMATSMK-------KAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEM 414
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVV 148
K L D T+ ++ L +G V
Sbjct: 415 KE-AGLQPDVYTYNTLLSGLCKAGDFLAV 442
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 11 EHWKL--NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL 67
E+ KL + + N +I E +I EA+++LE + EKG++P+++++NI++ K K+
Sbjct: 340 ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM 399
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
D + K GF PD TY TL+ G+ A ++ + EM N+ +
Sbjct: 400 D-------DASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR-KNMKM 451
Query: 128 DRSTFTAMVDAL 139
D T ++ L
Sbjct: 452 DSVTLNTILRTL 463
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N +I + + ++A L E +E GL PD +YN ++ + ++ F+
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +N F PD+FT LL G L+ L++ F +D T+
Sbjct: 582 NKMVEN-------SFKPDVFTCNILLRGLCMEGVLEKALKL-FNTWVSKGKAIDTVTYNT 633
Query: 135 MVDALLYSGSI 145
++ +L G +
Sbjct: 634 LITSLCKEGRL 644
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 102/230 (44%), Gaps = 23/230 (10%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N +I +A + EA++ ++ + K ++ DS++ N ++ + KKL+ +
Sbjct: 419 VTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY----K 474
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
L + +K G+ D +Y TL++G+ ++ L++ EMK +I T+ ++
Sbjct: 475 LLSSARK---RGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKE-KEIIPSTVTYNCII 530
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
L G + A+ E+++ GL P Y +++H D + +
Sbjct: 531 GGLCQCGKTE----QAISKLNELLE-----SGLLPDETTYNTILHGYCREGDVEKAFQFH 581
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
+M +S P+V ++L+ +G ++ AL + +++ K I
Sbjct: 582 NKMVENS---FKPDVF--TCNILLRGLCMEGVLEKALKLFNTWVSKGKAI 626
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 11 EHWKL--NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL 67
E+ KL + + N +I E +I EA+++LE + EKG++P+++++NI++ K K+
Sbjct: 340 ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM 399
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
D + K GF PD TY TL+ G+ A ++ + EM N+ +
Sbjct: 400 D-------DASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR-KNMKM 451
Query: 128 DRSTFTAMVDAL 139
D T ++ L
Sbjct: 452 DSVTLNTILRTL 463
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N +I + + ++A L E +E GL PD +YN ++ + ++ F+
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +N F PD+FT LL G L+ L++ F +D T+
Sbjct: 582 NKMVEN-------SFKPDVFTCNILLRGLCMEGMLEKALKL-FNTWVSKGKAIDTVTYNT 633
Query: 135 MVDALLYSGSI 145
++ +L G +
Sbjct: 634 LITSLCKEGRL 644
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 102/230 (44%), Gaps = 23/230 (10%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N +I +A + EA++ ++ + K ++ DS++ N ++ + KKL+ +
Sbjct: 419 VTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY----K 474
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
L + +K G+ D +Y TL++G+ ++ L++ EMK +I T+ ++
Sbjct: 475 LLSSARK---RGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKE-KEIIPSTVTYNCII 530
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
L G + A+ E+++ GL P Y +++H D + +
Sbjct: 531 GGLCQCGKTE----QAISKLNELLE-----SGLLPDETTYNTILHGYCREGDVEKAFQFH 581
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
+M +S P+V ++L+ +G ++ AL + +++ K I
Sbjct: 582 NKMVENS---FKPDVF--TCNILLRGLCMEGMLEKALKLFNTWVSKGKAI 626
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ + + + N +I + A ILE + K G +P+SLSYN L+ K KK+D
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMD 396
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+ + E++ S G +PDI TY T+L ++ +EI+ ++ K C ++
Sbjct: 397 RAIEYLERM-------VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449
Query: 127 LDRSTFTAMVDALLYSG 143
+ T+ ++D L +G
Sbjct: 450 I---TYNTVIDGLAKAG 463
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ + +++D A + LE V +G PD ++YN +++A K K++ +
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL SS G P + TY T++ G A ++++ EM++ +L D T+++
Sbjct: 438 NQL-------SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA-KDLKPDTITYSS 489
Query: 135 MVDALLYSGSI 145
+V L G +
Sbjct: 490 LVGGLSREGKV 500
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + +A ++L+ + K L+PD+++Y+ L+ + K+D + F +
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE-IVFEMKSCCNLILDRSTFTAM 135
+ G P+ T+ ++++G + ++ +V+ + C +++T +
Sbjct: 510 FE-------RMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPT--ETSYTIL 560
Query: 136 VDALLYSGSIK 146
++ L Y G K
Sbjct: 561 IEGLAYEGMAK 571
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTK 65
+++R + + N ++ + ++ ++ +A ++L+ +++ PD ++Y ILI A +
Sbjct: 194 VLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDS 253
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ M ++++D G C+ PD+ TY L+ G L ++ + +M S
Sbjct: 254 GVGQAMKLLDEMRDRG--CT-----PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I +IEA+ + +A ++L+ + ++G PD ++YN+L++ K +LD + F
Sbjct: 238 DVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
+ S G P++ T+ +L
Sbjct: 298 NDM-------PSSGCQPNVITHNIIL 316
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 12/146 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
+FEE + +LN ++ +++I+ + RIDEAY ILE ++KGL P+ ++N L+
Sbjct: 521 LFEE---AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLD 577
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K ++++ + + +K+ KC P+ +TY+ L+ G + +M
Sbjct: 578 ALVKAEEINEALVCFQSMKE--MKCP-----PNTYTYSILINGLCRVQKYNKAFVFWQDM 630
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
+ L+ + T+T M+ L G+I
Sbjct: 631 QK-QGLVPNVVTYTTMISGLAKVGNI 655
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+ ++ + L+ NAV++ ++ ++ +AY+ILE + EK ++P +Y ++ K +
Sbjct: 455 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 514
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
LD E+ K S G ++ Y++L+ GF + I+ EM L
Sbjct: 515 LDEAYMLFEEAK-------SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK-KGLT 566
Query: 127 LDRSTFTAMVDALLYSGSI 145
+ T+ +++DAL+ + I
Sbjct: 567 PNVYTWNSLLDALVKAEEI 585
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R K + ++N ++ +A +++ I E + G PD SY+ILI K +
Sbjct: 387 RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQAR 446
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
T +K GF D Y ++ GF + + EI+ EMK C +
Sbjct: 447 ETSNIFHAMKQQ-------GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPT 498
Query: 129 RSTFTAMVDAL 139
+T+ A+VD L
Sbjct: 499 VATYGAIVDGL 509
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I A R ++AY++LE + E+G P +S+N +++ K +K+D + E +K
Sbjct: 189 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 248
Query: 80 NGQKCSS 86
+ + SS
Sbjct: 249 DAEPNSS 255
>gi|449468059|ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 225
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 68/124 (54%), Gaps = 16/124 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
KL+ N +I+ +A +++ A+++ E + ++GL+ D ++YNI+I K ++D
Sbjct: 83 KLDIESYNCLIDGLCKAGKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQVDKANI 142
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--------CCN 124
E++++NG C+ PDI TY TLL GF + +++++ +M CN
Sbjct: 143 LFEKMEENG--CT-----PDIITYNTLLCGFCQSNKSDEVVKLLHKMIQRDMSPDAISCN 195
Query: 125 LILD 128
+++D
Sbjct: 196 IVID 199
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 18/177 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+N + + + NA+I ++++A +LE + EKGL PD +SY+ ++S ++
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+D + ++ + G K PD TY++L+ GF + + ++ EM L
Sbjct: 466 VDEALRVKREMVEKGIK-------PDTITYSSLIQGFCEQRRTKEACDLYEEMLR-VGLP 517
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
D T+TA+++A G ++ AL + E+V++ G+ P Y +++ L
Sbjct: 518 PDEFTYTALINAYCMEGDLE----KALQLHNEMVEK-----GVLPDVVTYSVLINGL 565
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 32/158 (20%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N + N +I+ + ++ID+ +++L S+ KGLEP+ +SYN++I+ C + + +V+
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL 298
Query: 74 NEQLKDNGQK-------------CSSGGFH---------------PDIFTYATLLMGFRH 105
E + G C G FH P + TY +L+
Sbjct: 299 TE-MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
A ++ +E + +M+ L + T+T +VD G
Sbjct: 358 AGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKG 394
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +++ + ++EAY++L + + G P ++YN LI+ T K++ +
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E +K+ G PD+ +Y+T+L GF + D+ L + EM
Sbjct: 439 EDMKEKG-------LSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 18/169 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I A ID A + + +E KG P+ ++YN LI K +K+D
Sbjct: 204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL- 262
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
L+ K G P++ +Y ++ G ++ + ++ EM LD T+
Sbjct: 263 --LRSMALK----GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR-RGYSLDEVTYNT 315
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ G+ AL + E+++ GL P Y S++H +
Sbjct: 316 LIKGYCKEGNFH----QALVMHAEMLRH-----GLTPSVITYTSLIHSM 355
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V + V+++ ID+A I+ + G P LSYN ++ A I++K+ + F E +
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKR---NISFAENV 192
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSCCNLILDRSTFTAM 135
++ P++FTY L+ GF A ++ L + E K C ++ T+ +
Sbjct: 193 ---FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV---TYNTL 246
Query: 136 VDA 138
+D
Sbjct: 247 IDG 249
>gi|255580733|ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529229|gb|EEF31203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 619
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 20 MNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N +IE +A R++E E +E+GL P L++N +I+ +T +++ F +L
Sbjct: 377 FNFLIEGCAKAGRVEECLSYFEKMIERGLVPSLLAFNKMIAKLCETGEVNQANTFLTRLL 436
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
D G F PD TY+ L+ G+ +Q +L++ +EM+ L FT ++ +
Sbjct: 437 DKG-------FSPDETTYSYLMTGYERDNQIQEVLKLYYEMEY-RPLSPGLLVFTPLIRS 488
Query: 139 LLYSGSIK 146
L + G ++
Sbjct: 489 LCHCGKLE 496
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 32 RIDEAYQILESVEKGLEPDSL-SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R D+A+Q ++ K P SL +Y +LI AC K + +K G H
Sbjct: 490 RTDKAFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEG-------LH 542
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
PD+ TY L+ G+ L + E++ EM+S + D +T+ ++ +++ G +
Sbjct: 543 PDVVTYNNLMYGYGKTHQLNKVFELIDEMRS-AGISPDVATYNILIHSMVVRGYVD---- 597
Query: 151 YALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY 189
A I E+++R G P + ++ L+ R D+
Sbjct: 598 EANEIISELIRR-----GFVPSALAFTDVIGGLSKRGDF 631
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 12/146 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
+FEE + +LN ++ +++I+ + RIDEAY ILE ++KGL P+ ++N L+
Sbjct: 389 LFEE---AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLD 445
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K ++++ + + +K+ KC P+ +TY+ L+ G + +M
Sbjct: 446 ALVKAEEINEALVCFQSMKE--MKCP-----PNTYTYSILINGLCRVQKYNKAFVFWQDM 498
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
+ L+ + T+T M+ L G+I
Sbjct: 499 QK-QGLVPNVVTYTTMISGLAKVGNI 523
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+ ++ + L+ NAV++ ++ ++ +AY+ILE + EK ++P +Y ++ K +
Sbjct: 323 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 382
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
LD E+ K S G ++ Y++L+ GF + I+ EM L
Sbjct: 383 LDEAYMLFEEAK-------SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK-KGLT 434
Query: 127 LDRSTFTAMVDALLYSGSI 145
+ T+ +++DAL+ + I
Sbjct: 435 PNVYTWNSLLDALVKAEEI 453
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R K + ++N ++ +A +++ I E + G PD SY+ILI K +
Sbjct: 255 RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQAR 314
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
T +K GF D Y ++ GF + + EI+ EMK C +
Sbjct: 315 ETSNIFHAMKQQ-------GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPT 366
Query: 129 RSTFTAMVDAL 139
+T+ A+VD L
Sbjct: 367 VATYGAIVDGL 377
Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I A R ++AY++LE + E+G P +S+N +++ K +K+D + E +K
Sbjct: 57 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 116
Query: 80 NGQKCSS 86
+ + SS
Sbjct: 117 DAEPNSS 123
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 25/206 (12%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE + +LN ++ +++I+ + RIDEAY ILE + +KGL P+ ++N L+
Sbjct: 644 LFEE---AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLD 700
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K ++++ + + +K+ KC+ P+ TY L+ G + EM
Sbjct: 701 ALVKAEEINEALVCFQSMKE--LKCT-----PNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
+ + ++T M+ L +G+I G + R +N G+ P Y +M
Sbjct: 754 QK-QGMKPSTISYTTMISGLAKAGNIAEA--------GALFDRFKANGGV-PDSACYNAM 803
Query: 180 MHELA----ARVDYDIVKSPYRRMWP 201
+ L+ A + + + RR P
Sbjct: 804 IEGLSNGNRAMDAFSLFEETRRRGLP 829
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N ++ R+ ++DEA ++ E ++K P+ +YNILI + KLD
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAF---- 397
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+L+D+ QK G P++ T ++ ++ L + EM K C D TF
Sbjct: 398 ELRDSMQK---AGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVC---TPDEITFC 451
Query: 134 AMVDALLYSGSI 145
+++D L G +
Sbjct: 452 SLIDGLGKVGRV 463
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 26/186 (13%)
Query: 11 EHWKLN-----TIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
EH + N T N +I A + DEAY +LE KG P ++YN +++ K
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKM 356
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+D + E++K + P++ TY L+ A L + E+ M+
Sbjct: 357 GKVDEALKVFEEMKKDAA--------PNLSTYNILIDMLCRAGKLDTAFELRDSMQK-AG 407
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L + T MVD L S + A +F E+ +VC+ P + S++ L
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLD----EACAMFEEMDYKVCT-----PDEITFCSLIDGLG 458
Query: 185 --ARVD 188
RVD
Sbjct: 459 KVGRVD 464
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ ++ N I++ + ++D A++ +E GL+PD ++Y +I K +LD +
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLE 114
E L+ N + P + Y T++MG+ A SLLE
Sbjct: 297 EHLEKNRRV-------PCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T N VI+ + ++++AYQ+LE ++ KG EP ++Y +I K +LD
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+ K S ++ Y++L+ GF + I+ E+ L + T+
Sbjct: 645 FEEAK-------SKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQ-KGLTPNLYTWN 696
Query: 134 AMVDALLYSGSI 145
+++DAL+ + I
Sbjct: 697 SLLDALVKAEEI 708
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 29 EAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+A ++ E Y +++ + K P +Y LI A D+ + +Q+++ G
Sbjct: 145 KANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG------ 198
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
+ P + + TL+ GF + S L ++ EMKS +L D + +D+ G + +
Sbjct: 199 -YEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS-SSLDADIVLYNVCIDSFGKVGKVDM 256
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
A F EI GL P Y SM+ L A R+D
Sbjct: 257 ----AWKFFHEI-----EANGLKPDEVTYTSMIGVLCKANRLD 290
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMP 72
K + + ++I +A R+DEA ++ E +EK P + +YN +I K D
Sbjct: 270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E+ + G P + Y +L R + L++ EMK + + ST+
Sbjct: 330 LLERQRAKGS-------IPSVIAYNCILTCLRKMGKVDEALKVFEEMKK--DAAPNLSTY 380
Query: 133 TAMVDALLYSGSI 145
++D L +G +
Sbjct: 381 NILIDMLCRAGKL 393
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+I+++ +I+A +E Y++ S+ E+G D+ +YNI+I K K++ E
Sbjct: 556 SILIHGLIKAGFA----NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLE 611
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++K + GF P + TY +++ G L ++FE + L+ ++++
Sbjct: 612 EMK-------TKGFEPTVVTYGSVIDGLAKIDRLDEAY-MLFEEAKSKRIELNVVIYSSL 663
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+D G I A I E++++ GL P + + S++ L
Sbjct: 664 IDGFGKVGRID----EAYLILEELMQK-----GLTPNLYTWNSLLDAL 702
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTI N++I+ + R+D A ++ KG PD ++++ILI K++D M
Sbjct: 352 NTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLL 411
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRST 131
++ S G + TY TL+ GF +L + L+++ EM S C N++ T
Sbjct: 412 HEM-------SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVV----T 460
Query: 132 FTAMVDALLYSGSIK 146
++D L +G +K
Sbjct: 461 CNTLLDGLCNNGKLK 475
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N+VI+ + R+DEA Q+ +S+ KG PD +++ LI+ K ++ +
Sbjct: 538 DTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGL--- 594
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + G++ G + TY TL+ GF ++ L+I EM S
Sbjct: 595 EVFCEMGRR----GIVANAITYRTLIHGFCQVGNINGALDIFQEMIS 637
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 32 RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPFNEQLKDNGQKCSSGGF 89
+ EA ++ E + +GL PD+++YN +I K +LD T F+ S GF
Sbjct: 519 KFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSM--------GSKGF 570
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
PD+ T+ TL+ G+ + LE+ EM ++ + T+ ++ G+I
Sbjct: 571 SPDVVTFTTLINGYCKVGRVGDGLEVFCEMGR-RGIVANAITYRTLIHGFCQVGNIN--- 626
Query: 150 LYALCIFGEIVKRVCSNPGLWP 171
AL IF E++ + G++P
Sbjct: 627 -GALDIFQEMI-----SSGVYP 642
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKK-LDVTMPF 73
N N +I + R EA ++L E E+ + PD +++++LI+A +K K + +
Sbjct: 282 NLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELY 341
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRST 131
NE L G P+ TY +++ GF L + + + M K C D T
Sbjct: 342 NEMLPR--------GIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSP---DVIT 390
Query: 132 FTAMVDALLYSGSIKV 147
F+ ++D Y G+ +V
Sbjct: 391 FSILIDG--YCGAKRV 404
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ NA++ A+ + A I+E ++ GL+PD ++Y LI C K KLD+ M
Sbjct: 326 VAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAM----- 380
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
D QK + D TY L+ G A ++ EM L D +T+T ++
Sbjct: 381 --DIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAA-LEPDNTTYTMVI 437
Query: 137 DALLYSGSIKV 147
DA G +K
Sbjct: 438 DAFCRKGDVKT 448
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 28 REAQRIDE---AYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKC 84
R+ R+ E A ++ + + + ++P +++N LIS + + LD +++ D G K
Sbjct: 194 RDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVK- 252
Query: 85 SSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144
PD++TY L+ GF +++ +++ EM+ + + FT ++DA G+
Sbjct: 253 ------PDVYTYGALIKGFCRTGRMENAVKMFNEMRD-TGVNPNAVVFTTLIDAHCKEGN 305
Query: 145 I 145
+
Sbjct: 306 V 306
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + A+I +A R +A ++L E +E LEPD+ +Y ++I A + +
Sbjct: 393 LDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKL 452
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMG---FRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+++++ G+K P + TY ++ G K+ LL + + + D
Sbjct: 453 LKEMQNKGKK-------PGVVTYNVIMNGLCKLGQMKNADMLLHAMLNI----GVSPDDI 501
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIV--KRVCSNPGLWPKPHLYVSMMHELAAR 186
T+ ++D C G++ + + S+ G+ P +Y S++ ELA +
Sbjct: 502 TYNILLD--------------GQCKHGKVANSEELESSKGMVPDFAVYTSLISELAKK 545
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE + +LN ++ +++I+ + RIDEAY ILE + +KGL P+ ++N L+
Sbjct: 644 LFEE---AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLD 700
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K ++++ + + +K+ KC+ P+ TY L+ G + EM
Sbjct: 701 ALVKAEEINEALVCFQSMKE--LKCT-----PNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
+ + ++T M+ L +G+I G + R +N G+ P Y +M
Sbjct: 754 QK-QGMKPSTISYTTMISGLAKAGNIAEA--------GALFDRFKANGGV-PDSACYNAM 803
Query: 180 MHELA 184
+ L+
Sbjct: 804 IEGLS 808
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N ++ R+ ++DEA ++ E ++K P+ +YNILI + KLD
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAF---- 397
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+L+D+ QK G P++ T ++ ++ L I +M K C D TF
Sbjct: 398 ELRDSMQK---AGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVC---TPDEITFC 451
Query: 134 AMVDALLYSGSI 145
+++D L G +
Sbjct: 452 SLIDGLGKVGRV 463
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ ++ N I++ + ++D A++ +E GL+PD ++Y +I K +LD +
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLE 114
E L+ N + P + Y T++MG+ A SLLE
Sbjct: 297 EHLEKNRRV-------PCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 11 EHWKLN-----TIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
EH + N T N +I A + DEAY +LE KG P ++YN +++ K
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKM 356
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+D + E++K + P++ TY L+ A L E+ M+
Sbjct: 357 GKVDEALRVFEEMKKDAA--------PNLSTYNILIDMLCRAGKLDCAFELRDSMQK-AG 407
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L + T MVD L S + A IF ++ +VC+ P + S++ L
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLD----EACAIFEQMDYKVCT-----PDEITFCSLIDGLG 458
Query: 185 --ARVD 188
RVD
Sbjct: 459 KVGRVD 464
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T N VI+ + ++++AYQ+LE ++ KG EP ++Y +I K +LD
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+ K S ++ Y++L+ GF + I+ E+ L + T+
Sbjct: 645 FEEAK-------SKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQ-KGLTPNVYTWN 696
Query: 134 AMVDALLYSGSI 145
+++DAL+ + I
Sbjct: 697 SLLDALVKAEEI 708
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Query: 29 EAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+A ++ E + +++++ K P +Y LI A D+ + +Q+++ G
Sbjct: 145 KANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG------ 198
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
+ P + + TL+ GF + S L ++ EMKS +L D + +D+ G + +
Sbjct: 199 -YEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS-SSLDADIVLYNVCIDSFGKVGKVDM 256
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
A F EI GL P Y SM+ L A R+D
Sbjct: 257 ----AWKFFHEI-----EANGLKPDEVTYTSMIGVLCKANRLD 290
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+I+++ +I+A +E Y++ S+ E+G D+ +YNI+I K K++ E
Sbjct: 556 SILIHGLIKAGFA----NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLE 611
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++K + GF P + TY +++ G L ++FE + L+ ++++
Sbjct: 612 EMK-------TKGFEPTVVTYGSVIDGLAKIDRLDEAY-MLFEEAKSKRIELNVVIYSSL 663
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+D G I A I E++++ GL P + + S++ L
Sbjct: 664 IDGFGKVGRID----EAYLILEELMQK-----GLTPNVYTWNSLLDAL 702
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 10/133 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMP 72
K + + ++I +A R+DEA ++ E +EK P + +YN +I K D
Sbjct: 270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E+ + G P + Y +L R + L + EMK + + ST+
Sbjct: 330 LLERQRAKGSI-------PSVIAYNCILTCLRKMGKVDEALRVFEEMKK--DAAPNLSTY 380
Query: 133 TAMVDALLYSGSI 145
++D L +G +
Sbjct: 381 NILIDMLCRAGKL 393
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+ +I+ +A+R DE + ++ +E+ + PD + Y I+I C + +++ + F + +K
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKK 375
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF PD F Y T+L DL+ + EM NL+LD +T T M+ L
Sbjct: 376 K-------GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQ-NNLVLDSTTQTIMICGL 427
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVC 164
G + A+ IF E+ + C
Sbjct: 428 CKRGLVD----EAMQIFDEMGEHGC 448
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 29 EAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
++ ++ +AY++L S+ + G+ PD ++YN LI+ K + LD + ++L+
Sbjct: 512 QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLK------- 564
Query: 88 GFHPDIFTYATLLMGFRHA 106
G PD TY TL+ G A
Sbjct: 565 GISPDEITYGTLIDGLLRA 583
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K+ T++++++ A + IDEA Q+L S+ +KG PD ++YN +S K +++
Sbjct: 243 KIYTVLLSSLCNAGK----IDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQ 298
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
L+D GGF + Y+ L+ G A+
Sbjct: 299 RLVMLQD-------GGFALGLKGYSCLIDGLFQAR 326
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R++ LN NAVI + +DEA ++ + ++ G+ PD SY+ILI + ++D
Sbjct: 273 RKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVD 332
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
++++++ G P+I++Y+ L+ GF + LE+ EMK+ ++ D
Sbjct: 333 QASEVFKEMRNS-------GILPNIYSYSILIDGFCKEGRVDKALEVFEEMKN-SGILPD 384
Query: 129 RSTFTAMVDALLYSGSI 145
+++ ++D G +
Sbjct: 385 VYSYSILIDGFCRKGDM 401
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 22/143 (15%)
Query: 32 RIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+D+A ++ + + G+ P+ SY+ILI K ++D + E++K++G
Sbjct: 330 RVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSG-------IL 382
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
PD+++Y+ L+ GF D+ S ++ EM S + F+ A Y IK G
Sbjct: 383 PDVYSYSILIDGFCRKGDMDSAIKFWEEMTS--------NNFSP--SAFNYCSLIK--GY 430
Query: 151 YALCIFGEIVK--RVCSNPGLWP 171
Y F +K R+ G+WP
Sbjct: 431 YKSKQFANALKEFRIMQKLGMWP 453
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+ +I+ +A+R DE + ++ +E+ + PD + Y I+I C + +++ + F + +K
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKK 375
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF PD F Y T+L DL+ + EM NL+LD +T T M+ L
Sbjct: 376 K-------GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQ-NNLVLDSTTQTIMICGL 427
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVC 164
G + A+ IF E+ + C
Sbjct: 428 CKRGLVD----EAMQIFDEMGEHGC 448
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 29 EAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
++ ++ +AY++L S+ + G+ PD ++YN LI+ K + LD + ++L+
Sbjct: 512 QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLK------- 564
Query: 88 GFHPDIFTYATLLMGFRHA 106
G PD TY TL+ G A
Sbjct: 565 GISPDEITYGTLIDGLLRA 583
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K+ T++++++ A + IDEA Q+L S+ +KG PD ++YN +S K +++
Sbjct: 243 KIYTVLLSSLCNAGK----IDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQ 298
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
L+D GGF + Y+ L+ G A+
Sbjct: 299 RLVMLQD-------GGFALGLKGYSCLIDGLFQAR 326
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I +A+I+ +A +IDEAY+ LE + G PD ++++ILI+ ++D +
Sbjct: 418 HVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELF 477
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + G C PD+ TYATL+ A + ++ +M+S L DRST
Sbjct: 478 RGMAERG--CV-----PDMVTYATLVDRLCRASRVDEAFDLFQQMRS-DGLSPDRSTRRT 529
Query: 135 MVDALL 140
M+ LL
Sbjct: 530 MIHGLL 535
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
+ NT+ + V++ + R+++A +L + + G PD+++YN LI K ++L +
Sbjct: 275 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG 334
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NLILDR 129
++ + GFHP + TY TL G + +EI+ M + C N I
Sbjct: 335 LLREMLE-------AGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAI--- 384
Query: 130 STFTAMVDALLYSGSI 145
T++++VD L +G +
Sbjct: 385 -TYSSIVDGLCKAGRV 399
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+I+ + +R+ EAY + E KG P ++YN +I K +++ +
Sbjct: 29 DVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLY 88
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+ + + GF P + TY+TL+ G ++ +++ EM + C + T+
Sbjct: 89 DDMAIHF------GFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAP---NAVTY 139
Query: 133 TAMVDALLYSGSIK 146
+V+ALL G K
Sbjct: 140 NTLVNALLGQGRSK 153
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N+V++ + QRI +A+ + + ++E+G P+ ++Y+ LI K K+D +
Sbjct: 207 DVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLL 266
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ + G + ++ TY+T++ G ++ + ++ +M+ + D T+
Sbjct: 267 AKMVELGCRANT-------VTYSTVVDGLLKVGRMEDAVVVLRQMRD-AGCLPDAVTYNT 318
Query: 135 MVDALLYSGSIK-VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
++D ++ VGL R G P Y ++ H L +D
Sbjct: 319 LIDGFFKRQRLREAVGLL----------REMLEAGFHPSVVTYTTLCHGLCRSGRFD 365
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 13/154 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +I+ +D+ ++LE + +G P++++YN L++A + +
Sbjct: 97 FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAF 156
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-CNLILDRS 130
EQ+ NG C P++ T+ ++ G ++++ +V EM L D
Sbjct: 157 SLLEQMAANG--CP-----PELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVI 209
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
TF +++D L I L A +F ++R C
Sbjct: 210 TFNSVLDGLCKEQRI----LDAHNVFKRALERGC 239
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
++ N++I+ + + +D+A I++ V+ G+ PD +Y+++I K+K +D EQ
Sbjct: 226 LICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQ 285
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ + G + P+ TY +L+ G+ + + VF+ S C +I + +
Sbjct: 286 MVEAGTR-------PNSITYNSLIHGYSISGMWNESVR-VFKQMSSCGVIPTVDNCNSFI 337
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL--YVSMMHELAARVD 188
AL G A CIF +V + PKP + Y +M+H A D
Sbjct: 338 HALFKHGRTN----EAKCIFDSMVLK-------GPKPDIISYSTMLHGYATATD 380
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + N +I+A + +D + +LE + EKG++P+++SYNILIS K +++ +
Sbjct: 503 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALEL 562
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLL-----MGFRHA 106
++Q+ + G PDI TY TL+ MG+ HA
Sbjct: 563 SKQMLNQ-------GLAPDIVTYNTLINGLCKMGWMHA 593
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 38/246 (15%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN ++ N VI ++ EA ++ E++ KG +PD+ +Y+IL+ K ++ +
Sbjct: 292 ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVR 351
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDR 129
+++ GF P++ TY +L F D ++LLE EM S L L+
Sbjct: 352 LLREMEKK-------GFAPNVVTYTIVLHSFCKNGMWDDTRALLE---EM-SAKGLTLNS 400
Query: 130 STFTAMVDALLYSGSI-KVVGLYA----------LCIFGEIVKRVCSNPGLWPKPHLYVS 178
+ M+ AL G + + +GL +C + I+ +C+N + H++ +
Sbjct: 401 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 460
Query: 179 MMHE--LAARVDYDIVKSPYRR--MWPDSTGTISPEVQEEAGHL-------LMEAALNDG 227
++ E +A + Y+ + R W D+ ++ E+ L L++A DG
Sbjct: 461 LLEEGVVANGITYNTIIHALLRDGRWQDAV-RLAKEMILHGCSLDVVSYNGLIKAMCKDG 519
Query: 228 QVDLAL 233
VD +L
Sbjct: 520 NVDRSL 525
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N +I + +R+ +A ++ + + +GL PD ++YN LI+ K + +
Sbjct: 537 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 596
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E+L + HPDI TY L+
Sbjct: 597 LLEKLHNE-------NVHPDIITYNILI 617
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+ +I+ +A+R DE + ++ +E+ + PD + Y I+I C + +++ + F + +K
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKK 375
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF PD F Y T+L DL+ + EM NL+LD +T T M+ L
Sbjct: 376 K-------GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQ-NNLVLDSTTQTIMICGL 427
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVC 164
G + A+ IF E+ + C
Sbjct: 428 CKRGLVD----EAMQIFDEMGEHGC 448
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 29 EAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
++ ++ +AY++L S+ + G+ PD ++YN LI+ K + LD + ++L+
Sbjct: 512 QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLK------- 564
Query: 88 GFHPDIFTYATLLMGFRHA 106
G PD TY TL+ G A
Sbjct: 565 GISPDEITYGTLIDGLLRA 583
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K+ T++++++ A + IDEA Q+L S+ +KG PD ++YN +S K +++
Sbjct: 243 KIYTVLLSSLCNAGK----IDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQ 298
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
L+D GGF + Y+ L+ G A+
Sbjct: 299 RLVMLQD-------GGFALGLKGYSCLIDGLFQAR 326
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 41/179 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI +++I+ + R+DEA Q+ +S+ K PD +++N LI+ K +D +
Sbjct: 543 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGL--- 599
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + GQ+ G D TY TL+ GFR ++ L+I F
Sbjct: 600 ELFCEMGQR----GIVADAITYITLIYGFRKVDNIDGALDI----------------FQE 639
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL--YVSMMHELAARVDYDI 191
M+ + +Y +I + + GLW K L V+M+ +L V Y +
Sbjct: 640 MISSGVYPDTITIRNMLT---------------GLWSKEELERAVAMLEDLQMSVGYQL 683
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ +++I+ + R+D A + + KG PD +++N LI+ + K++D +
Sbjct: 357 STVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLL 416
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRST 131
++ + G + TY TL+ GF DL + +++ EM S C N++ T
Sbjct: 417 HEM-------TEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVV----T 465
Query: 132 FTAMVDALLYSGSIK 146
++D L +G +K
Sbjct: 466 CNTLLDGLCDNGKLK 480
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 14/199 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I A+R+D+ ++L E E GL ++++Y LI + L+
Sbjct: 392 DIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAA---- 447
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D Q+ S G P++ T TLL G L+ LE+ M+ + +D S
Sbjct: 448 ---QDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK-SKMDIDASRPFN 503
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
V+ + + +I + GL F E + P G+ P Y SM+ L + D
Sbjct: 504 GVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563
Query: 193 KSPYRRMWPDSTGTISPEV 211
+ M S SP+V
Sbjct: 564 TQMFDSMGSKS---FSPDV 579
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +A+I A + + EA ++ E + + + P +++Y+ +I K +LD
Sbjct: 322 DVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMF 381
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
G CS PDI T+ TL+ G+ AK + ++++ EM L+ + T+T
Sbjct: 382 YLTPTKG--CS-----PDIITFNTLIAGYCRAKRVDDGIKLLHEMTE-AGLVANTITYTT 433
Query: 135 MVDALLYSGSI 145
++ G +
Sbjct: 434 LIHGFCQVGDL 444
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 12/146 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
+FEE + +LN ++ +++I+ + RIDEAY ILE ++KGL P+ ++N L+
Sbjct: 655 LFEE---AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLD 711
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K ++++ + + +K+ KC P+ +TY+ L+ G + +M
Sbjct: 712 ALVKAEEINEALVCFQSMKE--MKCP-----PNTYTYSILINGLCRVQKYNKAFVFWQDM 764
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
+ L+ + T+T M+ L G+I
Sbjct: 765 QK-QGLVPNVVTYTTMISGLAKVGNI 789
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+ ++ + L+ NAV++ ++ ++ +AY+ILE + EK ++P +Y ++ K +
Sbjct: 589 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 648
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
LD E+ K S G ++ Y++L+ GF + I+ EM L
Sbjct: 649 LDEAYMLFEEAK-------SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK-KGLT 700
Query: 127 LDRSTFTAMVDALLYSGSI 145
+ T+ +++DAL+ + I
Sbjct: 701 PNVYTWNSLLDALVKAEEI 719
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
IF+E + R K + ++N ++ +A +++ I E + G PD SY+ILI
Sbjct: 515 IFKE---LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIH 571
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K + T +K GF D Y ++ GF + + EI+ EM
Sbjct: 572 GLTKAGQARETSNIFHAMKQQ-------GFALDARAYNAVVDGFCKSGKVHKAYEILEEM 624
Query: 120 KSCCNLILDRSTFTAMVDAL 139
K C + +T+ A+VD L
Sbjct: 625 KEKC-VQPTVATYGAIVDGL 643
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I A R ++AY++LE + E+G P +S+N +++ K +K+D + E +K
Sbjct: 323 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 382
Query: 80 NGQKCSS 86
+ + SS
Sbjct: 383 DAEPNSS 389
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 113/241 (46%), Gaps = 31/241 (12%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
E+V+ H NT + V+++ R+D+A +++E + +G+ ++++Y+ L+ K
Sbjct: 173 QEMVSARHVPDNT-TLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 231
Query: 64 TKKLD--VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++LD V + E + GF PDI TY+T++ G A L+ ++I FE S
Sbjct: 232 CERLDEAVALLLGEVTRR--------GFTPDIVTYSTVIDGLCKAGRLRDAVDI-FEEMS 282
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
C + T+ +++ +G + A+ + G++V C+ P Y ++M
Sbjct: 283 CAPTAI---TYNSLIGGYCRAGDMD----EAIRLLGKMVDDNCA-----PDVITYTTLMS 330
Query: 182 ELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241
D +++M + +SP+V L++ +G+++ AL+ L IT
Sbjct: 331 AFCKMGRLDDAYELFQQMVANK---LSPDVVTFTS--LVDGLCGEGRMEDALELLEE-IT 384
Query: 242 R 242
R
Sbjct: 385 R 385
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 29 EAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+A+ +DEA +L ++ +G+ P +L +N++I + +L + Q+ D
Sbjct: 92 KARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMND-------- 143
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
PD TY L+ G A L+ ++++ EM S + D +T T +V +L
Sbjct: 144 AHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVS-ARHVPDNTTLTVVVQSL 194
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E + R N V++ ++ ++ +A +++ +G P++++YNIL++ C +
Sbjct: 381 EEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRA 440
Query: 65 KKLDVTMPFNEQLKDNGQKCSS 86
+ D + + +QL G C +
Sbjct: 441 GRTDQALQYLDQLNSEGGPCPT 462
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLS-YNILISACIKTKKLDVTMP 72
NT+ N ++ A R D+A Q L+ + E G P S++ Y I++ A + + D +
Sbjct: 426 NTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQ 485
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
F E++ G+ P T+AT++ A Q E++ EM
Sbjct: 486 FYEEMIQR-------GYVPAAATFATVVFALCKAHQPQQAHELLEEM 525
>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 418
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + +AS+ +D+A ++ E ++ GL P+ +++ LI K +++DV M +
Sbjct: 210 SVLINGLCKASK----MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ +++ EM S L D+ T+T +
Sbjct: 266 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTTL 317
Query: 136 VDALLYSGSIKVVGLY 151
+D G ++ Y
Sbjct: 318 IDGNCKEGDLETAFEY 333
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD 68
R + + ++ NA+I + + ID A++I+ +EK + PD ++YN L+ ++D
Sbjct: 719 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 778
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+++ + G PD+ TY TL+ G+ D++ L I EM K +
Sbjct: 779 EARKLIDEMTERG-------IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 831
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
L T+ A++ L +G G A + E+V+ G+ P Y+S++ L
Sbjct: 832 L---TYNALIQGLCKNGQ----GDDAENMVKEMVEN-----GITPDDSTYISLIEGL 876
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKG-LEPDSLSYNILISACIK 63
E+ R N VI + R+DEA ++ E + KG ++P+++ YN LI
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598
Query: 64 TKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFT 95
KLD + + +++ + G ++ G PD+FT
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 658
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
Y L+ G +++ LEI FE S + T+TA++ AL G ++ +
Sbjct: 659 YNILINGHCKEGNVKKALEI-FENMSRRGVRATVVTYTALIYALSKKGQVQETDK----L 713
Query: 156 FGEIVKRVCSNPGLWPKPHLYVSMM--HELAARVD--YDIV-KSPYRRMWPD 202
F E V+R G+ P LY +++ H + +D ++I+ + +R+ PD
Sbjct: 714 FDEAVRR-----GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 760
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Query: 29 EAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+ + + EA +++++ + KG+E DS++YNI+I C K K++ E +K +G +
Sbjct: 251 KGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKME------EAIKLHGDM-TRR 303
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
GF PD+FT+ TLL + + ++ ++ +MK+
Sbjct: 304 GFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKT 337
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66
+ R +K + N ++ A +++E + +L+ ++ +GL+PD +SY +I K K
Sbjct: 300 MTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKD 359
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + +L D G K P++F Y L+ G+ D+ ++ V MKS
Sbjct: 360 IRKAKEYLTELMDRGLK-------PNVFIYNALIGGYGRNGDISGAIDAVETMKS 407
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+L++I N +I + +++EA ++ + +G +PD ++N L+ A K++ T
Sbjct: 271 ELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFH 330
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+Q+K G PDI +Y T++ G AKD++ E + E+
Sbjct: 331 LLDQMKTEG-------LQPDIVSYGTIIDGHCKAKDIRKAKEYLTEL 370
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LN A+I+A +A ++D +++L + GL+P ++YN+L+ A K+ +++
Sbjct: 9 LNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRL 68
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+++ GG P + T+ L+ G + + ++ EM+
Sbjct: 69 KGRMEQ-------GGMTPSVVTFGILINGLARGERFGEVGIVLQEME 108
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 2 FEENEIVNREHWKL-NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILI 58
FE E + + H N I + +I + R+ EA ++ E + + + PD+L+YN LI
Sbjct: 220 FEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALI 279
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ +K+D + E +K NG C+ P++F Y+ L+ GF L+ E+ E
Sbjct: 280 NGFCHGEKVDRALKIMEFMKKNG--CN-----PNVFNYSALMNGFCKEGRLEEAKEVFDE 332
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSI 145
MKS L D +T +++ +G +
Sbjct: 333 MKS-LGLKPDTVGYTTLINFFCRAGRV 358
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+FEE +V+++ + + NA+I +++D A +I+E ++K G P+ +Y+ L++
Sbjct: 258 LFEE--MVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMN 315
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +L E+ K+ + S G PD Y TL+ F A + +E++ +M
Sbjct: 316 GFCKEGRL-------EEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDM 368
Query: 120 K-SCCNLILDRSTFTAMVDALLYSGSIK 146
+ + C D TF ++ L G +
Sbjct: 369 RENKCR--ADTVTFNVILGGLCREGRFE 394
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 32/217 (14%)
Query: 29 EAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86
E+ ++D + L + +K LEP++ +NIL+ K +D E++K S
Sbjct: 176 ESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMK------KS 229
Query: 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+P++ TY+TL+ G + L+ +E+ EM S ++ D T+ A+++ + +
Sbjct: 230 HVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVD 289
Query: 147 VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WP 201
AL I E +K+ NP ++ Y ++M+ + K + M P
Sbjct: 290 ----RALKIM-EFMKKNGCNPNVFN----YSALMNGFCKEGRLEEAKEVFDEMKSLGLKP 340
Query: 202 DSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238
D+ G + L+ G+VD A++ L +
Sbjct: 341 DTVGYTT----------LINFFCRAGRVDEAMELLKD 367
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 33 IDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPFNEQLKDNGQKCSSGGFH 90
IDEA + E V KGL+P+ ++YN LI + +K+D + F L GGF
Sbjct: 315 IDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGAL-------GGGGFI 367
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
PD T TL+ +A +L LE VFE N+ D +T++ ++ L G+ +
Sbjct: 368 PDTCTLNTLMNAHCNAGNLNDALE-VFEKMMVLNVRPDSATYSVLIRNLCQRGNFE 422
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 21/190 (11%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+ PD+ ++NILI K +D F +++ KC PD+ TY TL+ G
Sbjct: 222 GVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRF--KCD-----PDLVTYNTLVDGLCR 274
Query: 106 AKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
A + +V M K NL D T+T +V I AL +F E+V +
Sbjct: 275 AGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEID----EALVVFEEMVSK-- 328
Query: 165 SNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAAL 224
GL P Y +++ L D +K + G P+ + LM A
Sbjct: 329 ---GLKPNEITYNTLIKGLCEVQKIDKIKQIFEGAL--GGGGFIPDTC--TLNTLMNAHC 381
Query: 225 NDGQVDLALD 234
N G ++ AL+
Sbjct: 382 NAGNLNDALE 391
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T N +I + +DE ++ + + + +PD ++YN L+ + K+++
Sbjct: 226 DTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNV- 284
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
NG S +PD+ TY TL+ G+ ++ L +VFE L + T+
Sbjct: 285 ----VNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEAL-VVFEEMVSKGLKPNEITYNT 339
Query: 135 MVDAL 139
++ L
Sbjct: 340 LIKGL 344
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
KL N++I + +A E+ Q+ S++ G+ P +++N L+ +K + ++
Sbjct: 153 KLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQS 212
Query: 73 -FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRS 130
F+E L S+ G PD +T+ L+ GF + EM + C+ D
Sbjct: 213 VFDEML-------STYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCD--PDLV 263
Query: 131 TFTAMVDALLYSGSIKVV 148
T+ +VD L +G + +
Sbjct: 264 TYNTLVDGLCRAGKVNIA 281
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 22/176 (12%)
Query: 16 NTIVMNAVIEASREAQRID---EAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
N ++ +I ID E+YQ + S KGL+PD + YN L++ K L
Sbjct: 344 NDVIFTTLIHGHSRNGEIDLMKESYQKMLS--KGLQPDIVLYNTLVNGFCKNGDLVAARN 401
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + G + PD TY TL+ GF D+++ LEI EM + LDR F
Sbjct: 402 IVDGMIRRGLR-------PDKITYTTLIDGFCRGGDVETALEIRKEMDQ-NGIELDRVGF 453
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+A+V + G + I E R G+ P Y MM + D
Sbjct: 454 SALVCGMCKEGRV---------IDAERALREMLRAGIKPDDVTYTMMMDAFCKKGD 500
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 53/188 (28%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
+ LN V N ++ + I +A ++ + + K L+P +S+N LI+ K LD
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
Q++ + + PD+FTY
Sbjct: 296 RLKHQMEKSRTR-------PDVFTY----------------------------------- 313
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+A+++AL K+ G + L F E+ KR GL P ++ +++H + + D+
Sbjct: 314 -SALINALCKEN--KMDGAHGL--FDEMCKR-----GLIPNDVIFTTLIHGHSRNGEIDL 363
Query: 192 VKSPYRRM 199
+K Y++M
Sbjct: 364 MKESYQKM 371
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTIV +A+I+ +A ++DEA ++ VE+G P+ +Y+ LI K K+LD+ +
Sbjct: 679 NTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVL 738
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA--KDLQSLLEIVFEMKSCCNLILDRSTF 132
++ +N C+ P+I Y ++ G D L ++ E K C ++ T+
Sbjct: 739 SKMLENS--CA-----PNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVV---TY 788
Query: 133 TAMVDALLYSGSI 145
TAM+D +G +
Sbjct: 789 TAMIDGFGKAGKV 801
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+I N K N + A+++ +A ++ +A +LE++ G EP+++ Y+ LI K
Sbjct: 634 KIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKA 693
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
KLD + ++ K G++P+++TY++L+ K L +L+++ +M SC
Sbjct: 694 AKLD-------EAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSC 746
Query: 123 C-NLILDRSTFTAMVDAL 139
N+++ +T M+D L
Sbjct: 747 APNIVI----YTEMIDGL 760
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 92/191 (48%), Gaps = 30/191 (15%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + A+I+ +A ++D+ ++ E KG P+ ++Y +LI+ C T LD
Sbjct: 782 KPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYA 841
Query: 73 FNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQ-SLLEIVFEMKSCCNLILDRS 130
E++K + P + +Y ++ G++ L LLE V + S ++L
Sbjct: 842 LLEEMKQT--------YWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILL--- 890
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
+ ++D + +G ++V AL + E++ ++ + K +LY S+++ A+++D
Sbjct: 891 -YKVLIDNFVKAGRLEV----ALELHKEVIS---ASMSMTAKKNLYTSLIYSFSYASKID 942
Query: 189 ------YDIVK 193
YD+++
Sbjct: 943 HAFELFYDMIR 953
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+T + VI A R++ A+ + + ++ G+ PD +Y ILI K +
Sbjct: 488 DTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWL 547
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E ++D G P + TY TL+ + AK + S+ +FE+ + T+T
Sbjct: 548 DEMVRD--------GCEPTVVTYTTLIHAYLKAKKV-SVANELFELMIAKGCFPNVITYT 598
Query: 134 AMVDALLYSGSI-KVVGLYA 152
A++D SG+I K +YA
Sbjct: 599 ALIDGYCKSGNIEKACQIYA 618
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 23 VIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
+I+ +A I +A+ L E V G EP ++Y LI A +K KK+ V E +
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELM---- 585
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ G P++ TY L+ G+ + +++ +I M+
Sbjct: 586 ---IAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMR 621
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 26/193 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ +I++A++ E + +KG+E + ++YN LI KL
Sbjct: 901 NVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKL------- 953
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ +D + S G PD+FTY +L+ G+R A ++Q + + EMK T+
Sbjct: 954 AEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMK------------TS 1001
Query: 135 MVDALLYSGSIKVVGLYALCIFG--EIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
+ L + + L +LC E+ K++ L P +Y ++H A D D
Sbjct: 1002 GIKPTLKTYHL----LISLCTKEGIELTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKA 1057
Query: 193 KSPYRRMWPDSTG 205
+ ++M S G
Sbjct: 1058 FNLQKQMIEKSIG 1070
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 6 EIVNREHWK---LNTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISAC 61
EI+ RE K N ++ N +I+ SR+ + +I ++G++PD L+YN LI
Sbjct: 748 EILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTF 807
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ ++ N + + N K G P + TY L+ G+ +E
Sbjct: 808 CELGDME-----NAEQEVNKMKLK--GVSPSVETYNILIGGYGRK----------YEFDK 850
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
C +L+ + M + + Y I + + + +IVKR + G+ P +Y
Sbjct: 851 CFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIY 905
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 6 EIVNR-EHWKLNTIVM--NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISAC 61
E+ NR +H +++ V N +I+ + +++ +A Q+ E + + L P ++YN LI
Sbjct: 573 ELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGY 632
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K + + E++K + P + T+ TLL G A ++ ++ EMK
Sbjct: 633 CKDGNPEKSFKVRERMK-------ADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKD 685
Query: 122 CCNLILDRSTFTAMVDALLYSGSIK---VVGLYALCI 155
+ D TF+ + D YS + K +G+Y +
Sbjct: 686 -QGFVPDAFTFSILFDG--YSSNDKADAALGVYETAV 719
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
++ N++I+ + + +D+A I++ V+ G+ PD +Y+++I K+K +D EQ
Sbjct: 170 LICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQ 229
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ + G + P+ TY +L+ G+ + + VF+ S C +I + +
Sbjct: 230 MVEAGTR-------PNSITYNSLIHGYSISGMWNESVR-VFKQMSSCGVIPTVDNCNSFI 281
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL--YVSMMHELAARVD 188
AL G A CIF +V + PKP + Y +M+H A D
Sbjct: 282 HALFKHGRTN----EAKCIFDSMVLK-------GPKPDIISYSTMLHGYATATD 324
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
+H K + NAVI +A RI+ A +L+ ++ KG PD +++NI+I K+D+
Sbjct: 38 KHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDL 97
Query: 70 TMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+ F E LKDN K P + TY L+ + + L+++ EM S L D
Sbjct: 98 ALKVFEELLKDNNCK-------PTLITYTILIEAYILEGGIDEALKLLDEMLS-RGLEPD 149
Query: 129 RSTFTAMVDALLYSGSI 145
T+ + L G +
Sbjct: 150 TFTYNVITRGLCKEGKV 166
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 21/232 (9%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVT 70
+ ++ + I+ +I+ ++ ID+A +++ +EK +PD +YN +IS K +++
Sbjct: 4 KDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESA 63
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+++K GF PD+ T+ ++ F + L++ E+ N
Sbjct: 64 KTVLDRMKRK-------GFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLI 116
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
T+T +++A + G I AL + E++ R GL P Y + L D
Sbjct: 117 TYTILIEAYILEGGID----EALKLLDEMLSR-----GLEPDTFTYNVITRGLCKEGKVD 167
Query: 191 IVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
R + +S G P+V ++L+ A LN G+ D +S +R
Sbjct: 168 RAFEFVRTL--NSRGC-KPDVITY--NILLRALLNQGKWDEGEKWMSEIFSR 214
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 29/244 (11%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA 60
FE +N K + I N ++ A + DE + + + +G EP+ ++Y+ILIS+
Sbjct: 170 FEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISS 229
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ K++ ++ + +K+ G PD + Y L+ F L +E + +
Sbjct: 230 LCRDGKIEESVNLVKVMKEK-------GLTPDAYCYDPLIAAFCREGKLDMAIEFL-DCM 281
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
C + D + ++ AL +G+ G +A+ IFG++ + C P Y +M+
Sbjct: 282 ICDGFLPDIVNYNTIMAALCKNGN----GDHAVEIFGKLDEVGCP-----PNVSSYNTML 332
Query: 181 HELAARVDYDIVKSPYRRMWPDS---TGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237
L + D YR + S + I P+V + L+ DG VD A+ L+
Sbjct: 333 SALWSSGDR------YRALGMISQMLSKGIDPDVITY--NSLISCLCRDGMVDEAIGLLA 384
Query: 238 NTIT 241
+ ++
Sbjct: 385 DMLS 388
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 39 ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98
I + + KG++PD ++YN LIS + +D + + SG F P+I +Y T
Sbjct: 348 ISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADML-------SGRFQPNIVSYKT 400
Query: 99 LLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGS 144
+L+G A + +E++ M ++ C + +T+T +++ + +SGS
Sbjct: 401 VLLGLCKAHRIDDAIEVLAAMIENGCQ--PNETTYTLLIEGIGFSGS 445
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 113/238 (47%), Gaps = 30/238 (12%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CI 62
N++VN + + ++ + V++A + ++ EA++I++ +++G+EPD ++Y L+ C+
Sbjct: 255 NQMVNSKILP-DVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 313
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+++ + F+ ++ GF PD+ +Y TL+ G+ + + + EM
Sbjct: 314 QSEMDEAVKVFDMMVRK--------GFAPDVISYTTLINGYCKIHKIDKAMYLFEEM--- 362
Query: 123 CN--LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
C I D T+ ++ L + G ++ A+ +F E+V R G P Y ++
Sbjct: 363 CRKEWIPDTKTYNTLMHGLCHVGRLQ----DAIALFHEMVAR-----GQMPDLVTYSILL 413
Query: 181 HELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238
L + + + + ++P++Q +++++ G+++ A D SN
Sbjct: 414 DSLCKNCHLEEAMALLKAI---EASNLNPDIQ--VYNIIIDGMCRAGELEAARDLFSN 466
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N +N +I + R+ A+ +L + K G +PD ++ LI C++ K + F
Sbjct: 90 NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 149
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ + + GF P++ TY TL+ G + + + ++ M+ N D +T
Sbjct: 150 DKMIDE--------GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQ-GNCQPDVVIYT 200
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
+++D+L + A +F ++V + G+ P Y S++H L ++ V
Sbjct: 201 SIIDSLCKDRQVT----EAFNLFSQMVGQ-----GISPDIFTYTSLVHALCNLCEWKHVT 251
Query: 194 SPYRRM 199
+ +M
Sbjct: 252 TLLNQM 257
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 33 IDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
++EA +L+++E L PD YNI+I + +L E +D SS G HP
Sbjct: 422 LEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGEL-------EAARDLFSNLSSKGLHP 474
Query: 92 DIFTYATLLMGF 103
++TY ++ G
Sbjct: 475 SVWTYNIMIHGL 486
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE + R+ W +T N ++ R+ +A + E V +G PD ++Y+IL+
Sbjct: 358 LFEE---MCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLD 414
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ K L+ M + ++ + +PDI Y ++ G A +L++ ++ +
Sbjct: 415 SLCKNCHLEEAMALLKAIE-------ASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNL 467
Query: 120 KS 121
S
Sbjct: 468 SS 469
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N +I+ A ++ A + ++ KGL P +YNI+I K L+ ++
Sbjct: 443 VYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEM 502
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
+G CS PD TY T+ GF + ++++ EM + D ST T +V+
Sbjct: 503 --DGNDCS-----PDGCTYNTIARGFLQNNETLRAIQLLEEMLA-RGFSADVSTTTLLVE 554
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKR 162
L G + L + E +R
Sbjct: 555 MLSDDGLDQSSCFLMLSVLSEDDRR 579
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I A A+RID+A+ I + ++ +G PD ++Y +LI A KLD
Sbjct: 269 NIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLD------ 322
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K+ K + PD TY TL+ F DL+++ EM+ D T+T
Sbjct: 323 -KAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEME-VDGYAPDVVTYTI 380
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
+++AL SG + F + V + G++P H Y +M+ L A R+D
Sbjct: 381 LIEALCKSGDVDRA-------FDML--DVMTTKGIFPNLHTYNTMICGLLKARRLD 427
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 32 RIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
RIDEA Q E ++ GL+PD++SYN +I+ K+++LD + ++K+ G
Sbjct: 986 RIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNR-------GIS 1038
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
PD++TY L++ A + +++ E++ + L+ S FT +AL+ S+
Sbjct: 1039 PDLYTYNALILHLGIAGKVDVAVKMYEELQL---VGLEPSVFT--YNALIRGHSLSGNKD 1093
Query: 151 YALCIFGEIVKRVCS 165
A +F +++ CS
Sbjct: 1094 QAFSVFKKMMVVGCS 1108
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +++A +++RI++ Y + E +G EP+++++NI+ISA +K+ L+ +
Sbjct: 830 NNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLY 889
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+L SG F P TY L+ G A + ++I EM
Sbjct: 890 YELM-------SGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEM 927
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N+++ N +I ++ ID A ++ + V++G+ PD SY IL+ T ++D + +
Sbjct: 935 NSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYF 994
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+LK G PD +Y ++ G ++ L L + EMK+ + D T+ A
Sbjct: 995 EELKLT-------GLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKN-RGISPDLYTYNA 1046
Query: 135 MVDALLYSGSIKV 147
++ L +G + V
Sbjct: 1047 LILHLGIAGKVDV 1059
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Query: 1 IFEENEIVNREH---WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
I E +I N H +++ N +++ +A +ID+A Q+L E + KG EPD + N
Sbjct: 496 ISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINS 555
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
LI+ K ++D +LK+ P + TY LL G + LE+
Sbjct: 556 LINTLYKAGRVDAAWKMFGRLKNL-------KLAPTVVTYNILLTGLGKEGKILKALELF 608
Query: 117 FEM-KSCC--NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173
M +S C N I TF +++D L + ++ + AL +F + C NP +
Sbjct: 609 GSMTESGCPPNTI----TFNSLLDCLSKNDAVDL----ALKMFCRMTMMNC-NPDVLTYN 659
Query: 174 HLYVSMMHELAARVDY 189
+ ++ E R+DY
Sbjct: 660 TIIYGLIRE--GRIDY 673
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G PD ++Y ILI A K+ +D + + ++ G P++ TY T++ G
Sbjct: 370 GYAPDVVTYTILIEALCKSGDVDRAFDMLDVM-------TTKGIFPNLHTYNTMICGLLK 422
Query: 106 AKDLQSLLEIVFEMKS 121
A+ L LE++ M+S
Sbjct: 423 ARRLDEALELLENMES 438
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTI N++++ + +D A ++ PD L+YN +I I+ ++D F
Sbjct: 619 NTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFF 678
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSLLEIVFEM 119
Q+K PD T TL+ G RH + ++ +++V E
Sbjct: 679 HQMKK--------FLSPDYVTLCTLIPGVVRHGR-VEDAIKVVMEF 715
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD 68
R + + ++ NA+I + + ID A++I+ +EK + PD ++YN L+ ++D
Sbjct: 724 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 783
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+++ + G PD+ TY TL+ G+ D++ L I EM K +
Sbjct: 784 EARKLIDEMTERG-------IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 836
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
L T+ A++ L +G G A + E+V+ G+ P Y+S++ L
Sbjct: 837 L---TYNALIQGLCKNGQ----GDDAENMVKEMVEN-----GITPDDSTYISLIEGL 881
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKG-LEPDSLSYNILISACIK 63
E+ R N VI + R+DEA ++ E + KG ++P+++ YN LI
Sbjct: 544 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 603
Query: 64 TKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFT 95
KLD + + +++ + G ++ G PD+FT
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 663
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
Y L+ G +++ LEI FE S + T+TA++ AL G ++ +
Sbjct: 664 YNILINGHCKEGNVKKALEI-FENMSRRGVRATVVTYTALIYALSKKGQVQETDK----L 718
Query: 156 FGEIVKRVCSNPGLWPKPHLYVSMM--HELAARVD--YDIV-KSPYRRMWPD 202
F E V+R G+ P LY +++ H + +D ++I+ + +R+ PD
Sbjct: 719 FDEAVRR-----GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 765
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 33/210 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+++ +DEA ++ ++ V KG P+ +SYN LI+ K +++D M
Sbjct: 305 NVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLF 364
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLI----- 126
G+ C PD TY+TL+ G H + LQ + + EM +C NL+
Sbjct: 365 ------GEMCRQE-LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRIL 417
Query: 127 ---LDRSTFTAMVDALLYS--GS-------IKVVGLYALCIFGEI--VKRVCSN---PGL 169
L ++ + A ALL + GS + + + +C GE+ + + SN GL
Sbjct: 418 LDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGL 477
Query: 170 WPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
P Y M++ L R D +R M
Sbjct: 478 QPDVWTYSIMINGLCRRGLLDEASKLFREM 507
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 27/230 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I + R+ A+ +L + K G +PD+ ++ LI K+ +
Sbjct: 95 NIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLF 154
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+++ G F PD+ TY TL+ G + + + ++ M K+C + +
Sbjct: 155 DKMIGEG-------FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVF---AY 204
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++D+L + A +F E+V + G+ P Y S++H L ++ V
Sbjct: 205 NTIIDSLCKDRQVT----EAFNLFSEMVTK-----GISPDIFTYNSLIHALCNLCEWKHV 255
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
+ M DS I P+V + + +++A +G+V A D + I R
Sbjct: 256 ATLLNEMV-DS--KIMPDVV--SFNTVVDALCKEGKVTEAHDVVDKMIQR 300
>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22670, mitochondrial; Flags: Precursor
gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 562
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 29/195 (14%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
K +TI MN++++A + I+ A+++ + ++PD+ ++NILI K +K D
Sbjct: 236 KTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAM 295
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRSTF 132
+ +K F PD+ TY + + + D + + E++ EM+ + CN + T+
Sbjct: 296 MDLMK-------VTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCN--PNVVTY 346
Query: 133 TAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL-------- 183
T ++ +L S + + +G+Y E +K G P Y S++H L
Sbjct: 347 TIVMHSLGKSKQVAEALGVY------EKMKE----DGCVPDAKFYSSLIHILSKTGRFKD 396
Query: 184 AARVDYDIVKSPYRR 198
AA + D+ RR
Sbjct: 397 AAEIFEDMTNQGVRR 411
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 32 RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD-NGQKCSSGGF 89
R +A +I E + +G+ D L YN +ISA + + ++ + ++++D G+ CS
Sbjct: 393 RFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCS---- 448
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
P++ TYA LL H K LL I+ ++ +D ST+ ++ L SG ++
Sbjct: 449 -PNVETYAPLLKMCCHKK-KMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEAC 506
Query: 150 LYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
L+ F E V++ G+ P+ ++ EL +
Sbjct: 507 LF----FEEAVRK-----GMVPRDSTCKMLVDELEKK 534
>gi|356549954|ref|XP_003543355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Glycine max]
Length = 366
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+ R+ + L+ + N V++ R+DE + S+ + G PD++SYN LI+ K +
Sbjct: 201 LKRQGYGLDLVTYNIVLDILGRTGRVDEMLDVFASIKDTGFVPDTVSYNTLINGLRKAGR 260
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
D+ + +++ + G PD+ TY ++ F + +++ L+ EMK
Sbjct: 261 FDMCFVYFKEMTEK-------GVEPDLLTYTAIIEIFGRSGNVEESLKCFREMK 307
>gi|326533124|dbj|BAJ93534.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534390|dbj|BAJ89545.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 837
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT V N+++ A+ A + + + + ++K G+ PD SYNIL+ C ++ +
Sbjct: 306 NTHVFNSLMNAN--AHSMSYNFSVYKHMQKLGVRPDLASYNILLKTCCNAREFNTAQEIY 363
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILDRST 131
E++K +K + G D+FTY+T++ F AK + I +M++ NL+ S
Sbjct: 364 EEMK---KKENDGILKLDVFTYSTMMKVFAEAKMWKMASNIKDDMRAVGARLNLVTWSSL 420
Query: 132 FTAMVDALLYSGSIKVV 148
A ++ L G+I+++
Sbjct: 421 INAYANSGLIDGAIEIL 437
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN + +++I A + ID A +ILE + G +P + +NI+++A +K+ + D
Sbjct: 411 RLNLVTWSSLINAYANSGLIDGAIEILEEMIRDGCQPTAPCFNIILTALVKSCQYDRAFR 470
Query: 73 FNEQLKDNGQKCS----SGGFHPDIFTY 96
+ G K S G PD FT+
Sbjct: 471 LFNSWMEFGIKVSLSLEQKGSLPDNFTF 498
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI A +DEA ++ +S+ KG P ++NILI A K KLD
Sbjct: 219 SAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLL 278
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ D+G PD+ TY+TL+ G D + LLE + + + C ++ ++T
Sbjct: 279 KRMTDDGHV-------PDVVTYSTLISGLCSIARVDDARHLLEDMVK-RQCKPTVVTQNT 330
Query: 132 FTAMVDALLYSGSIK 146
++ L +G IK
Sbjct: 331 ---LIHGLCKAGRIK 342
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N ++ A + + A ++L + V +GL P+ ++Y L+S K +L
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K S G P++FTY L++GF A + L++ EM C + D +
Sbjct: 419 AQMK-------SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM-VCAGISPDHVVYGT 470
Query: 135 MVDALLYSG 143
+ L SG
Sbjct: 471 LAAELCKSG 479
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + +ID+A Q+ +E K + PDS SY ILI K KL+ +++ D
Sbjct: 154 NTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLD 213
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDA 138
+ G P TY ++ G A L LE+ M+S C R TF ++DA
Sbjct: 214 S-------GITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCR--PSRFTFNILIDA 264
Query: 139 LLYSGSI 145
G +
Sbjct: 265 HCKRGKL 271
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 32 RIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+D+A +LE V++ +P ++ N LI K ++ + + +GQ
Sbjct: 305 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS------- 357
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI-KVVG 149
PD+ TY TL+ G A + E++ +M + L + T+TA+V L + + + G
Sbjct: 358 PDVVTYNTLVHGHCRAGQTERARELLSDMVA-RGLAPNVVTYTALVSGLCKANRLPEACG 416
Query: 150 LYA 152
++A
Sbjct: 417 VFA 419
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 2 FEENEIVNREHWKL-NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILI 58
FE E + + H N I + +I + R+ EA ++ E + + + PD+L+YN LI
Sbjct: 263 FEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALI 322
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ K+D + E +K NG C +P++F Y+ L+ GF L+ E+ E
Sbjct: 323 NGFCHGXKVDRALKIMEFMKKNG--C-----NPNVFNYSALMNGFCKEGRLEEAKEVFDE 375
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSI 145
MKS L D +T +++ +G +
Sbjct: 376 MKS-LGLKPDTVGYTTLINFFCRAGRV 401
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+FEE +V+++ + + NA+I ++D A +I+E ++K G P+ +Y+ L++
Sbjct: 301 LFEE--MVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMN 358
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +L E+ K+ + S G PD Y TL+ F A + +E++ +M
Sbjct: 359 GFCKEGRL-------EEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDM 411
Query: 120 -KSCCNLILDRSTFTAMVDALLYSGSIK 146
++ C D TF ++ L G +
Sbjct: 412 XENKCR--ADTVTFNVILGGLCREGRFE 437
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
++ N++I+ + + +D+A I++ V+ G+ PD +Y+++I K+K +D EQ
Sbjct: 246 LICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQ 305
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ + G + P+ TY +L+ G+ + + VF+ S C +I + +
Sbjct: 306 MVEAGTR-------PNSITYNSLIHGYSISGMWNESVR-VFKQMSSCGVIPTVDNCNSFI 357
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL--YVSMMHELAARVD 188
AL G A CIF +V + PKP + Y +M+H A D
Sbjct: 358 HALFKHGRTN----EAKCIFDSMVLK-------GPKPDIISYSTMLHGYATATD 400
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R K NTI+ +I+ + +++D+A +I +++ G++P++++YN +I AC + +++
Sbjct: 233 RGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVQPNTVTYNSVIDACARVGEMN 292
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLEIVFEMKSCCNL 125
E++ S G PD+ T++T++ G+ D+ LL +++E ++
Sbjct: 293 SATRLLEEML-------SSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDV 345
Query: 126 ILDRSTFTAMVDALL 140
IL S V + L
Sbjct: 346 ILYNSLLEGCVKSGL 360
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I + +I+ +D+++Q+L + E+G+ PD + YN L+ C+K+ L + Q
Sbjct: 311 ITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQ 370
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+++ P FT L+ + + L + E+ E+ N ++ +T ++
Sbjct: 371 MQEY-------NIPPSNFTLTILIKMYGRSGQLDKVFELADELPKRYNFSINTHVYTCLM 423
Query: 137 DALLYSGSIKVV 148
A + +G +V
Sbjct: 424 SACITNGKYSMV 435
>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
Length = 625
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPFN 74
T V+N ++ RE Q +D+AY + ++ +++G PD ++Y+ +ISA KT+ +D T F
Sbjct: 212 TTVINGLL---REGQ-LDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFT 267
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI-LDRSTFT 133
+K+ G PD Y +L+ G+ + + + I +M C + + D T+T
Sbjct: 268 RMVKN--------GVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKM--CRHGVEPDVVTYT 317
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
A++D L +G A IF +VKR G P Y +++H A
Sbjct: 318 ALMDYLCKNGK----STEARKIFDSLVKR-----GHKPDSTTYGTLLHGYA 359
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+++ ++ +L + N ++ A + ++DEA + ++ ++GL PD ++Y ++
Sbjct: 372 DLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTA 431
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
++D + LK S G P+I + TL+ G + E+ FEM +
Sbjct: 432 GRVDDALSQFNSLK-------SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGI 484
Query: 123 CNLILDRSTFTAMVDALLYSGSI 145
C LD F A++ L G +
Sbjct: 485 C---LDTIFFNAIMGNLCKKGRV 504
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+TI NA++ + R+ EA + + V G+EP++ +YN LI K+D M
Sbjct: 486 LDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 545
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ NG K P TY T++ G+ ++ L ++ EM
Sbjct: 546 LGVMVFNGVK-------PSDVTYNTIINGYSQNGRIEDGLTLLREM 584
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPFNE 75
+ N +++ ++++EA ++L+ + E+G++PD +SYN LIS K + D F+E
Sbjct: 498 VTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDE 557
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
L S GF P + TY L+ G+ + E++ EM+S + D ST+ +
Sbjct: 558 ML--------SLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQS-KGITPDDSTYLYV 608
Query: 136 VDAL 139
++A+
Sbjct: 609 IEAM 612
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I+ NA+I+ ID A+Q+L+ ++ + PD +++N L+ + +K++ ++
Sbjct: 463 IMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDE 522
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+K+ G K PD +Y TL+ G+ D++ LE+ EM S
Sbjct: 523 MKERGIK-------PDHISYNTLISGYSKRGDMKDALEVFDEMLS 560
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
++ K + N+ I + +RI+EA +L + +E GL P++++YN LI C LD
Sbjct: 281 KNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDK 340
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ +++ + G S +FTY L+ K ++ +++ EM+ + D
Sbjct: 341 AFAYRDEMMNRGIVAS-------VFTYNLLIHALFLEKRIEEAEDMIKEMRE-KGVEPDV 392
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
T+ ++ G+ K AL +F E+V++ + P Y S++ R
Sbjct: 393 VTYNIQINGYCRCGNAK----KALSLFDEMVEK-----NIRPTVETYTSLIDVFGKR 440
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD 68
R + + ++ NA+I + + ID A++I+ +EK + PD ++YN L+ ++D
Sbjct: 350 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 409
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+++ + G PD+ TY TL+ G+ D++ L I EM K +
Sbjct: 410 EARKLIDEMTERG-------IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 462
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
L T+ A++ L +G G A + E+V+ G+ P Y+S++ L
Sbjct: 463 L---TYNALIQGLCKNGQ----GDDAENMVKEMVEN-----GITPDDSTYISLIEGL 507
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKG-LEPDSLSYNILISACIK 63
E+ R N VI + R+DEA ++ E + KG ++P+++ YN LI
Sbjct: 170 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229
Query: 64 TKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFT 95
KLD + + +++ + G ++ G PD+FT
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 289
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
Y L+ G +++ LEI FE S + T+TA++ AL G ++ +
Sbjct: 290 YNILINGHCKEGNVKKALEI-FENMSRRGVRATVVTYTALIYALSKKGQVQETD----KL 344
Query: 156 FGEIVKRVCSNPGLWPKPHLYVSMM--HELAARVD--YDIV-KSPYRRMWPD 202
F E V+R G+ P LY +++ H + +D ++I+ + +R+ PD
Sbjct: 345 FDEAVRR-----GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 391
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD 68
R + + ++ NA+I + + ID A++I+ +EK + PD ++YN L+ ++D
Sbjct: 277 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 336
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+++ + G PD+ TY TL+ G+ D++ L I EM K +
Sbjct: 337 EARKLIDEM-------TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 389
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
L T+ A++ L +G G A + E+V+ G+ P Y+S++ L
Sbjct: 390 L---TYNALIQGLCKNGQ----GDDAENMVKEMVEN-----GITPDDSTYISLIEGL 434
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKG-LEPDSLSYNILISACIK 63
E+ R N VI + R+DEA ++ E + KG ++P+++ YN LI
Sbjct: 97 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156
Query: 64 TKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFT 95
KLD + + +++ + G ++ G PD+FT
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 216
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
Y L+ G +++ LEI FE S + T+T+++ AL G ++ +
Sbjct: 217 YNILINGHCKEGNVKKALEI-FENMSRRGVRATVVTYTSLIYALSKKGQVQETDK----L 271
Query: 156 FGEIVKRVCSNPGLWPKPHLYVSMM--HELAARVD--YDIV-KSPYRRMWPD 202
F E V+R G+ P LY +++ H + +D ++I+ + +R+ PD
Sbjct: 272 FDEAVRR-----GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 318
>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
Length = 807
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+VI +A + +AY +LE ++ KG + D+L+YN LI + +++D E++K
Sbjct: 261 TSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKS 320
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
N F PDIFTY L+ G AK L +++ +++ + + ++ ++D
Sbjct: 321 ND-------FVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDG- 372
Query: 140 LYSGSIKVVGLYALCI-------------FGEIVKRVCSNPGLWPKPHLYVSMM 180
+S + +V Y L + + +++ +C N G + H Y+ M
Sbjct: 373 -FSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLC-NAGRASEAHSYLEEM 424
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKT 64
E + R+ ++ + + N +I Q ID AY++LE ++ PD +Y+ILI+ +
Sbjct: 281 EDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRA 340
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+L L+ N C+ P++ +Y TL+ GF A + ++ EM +
Sbjct: 341 KRLSEARDLLGTLR-NEDDCT-----PNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQ 394
Query: 125 LILDRSTFTAMVDALLYSG 143
D T++ ++ L +G
Sbjct: 395 HP-DVVTYSTLIRGLCNAG 412
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 23 VIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
VIE+ + + EA Q+LE + G++PD + + L+ A + K V M F E++ G
Sbjct: 576 VIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLG 635
Query: 82 QKCSSGGFHPDIFTYATLL 100
K P + TY+TLL
Sbjct: 636 SK-------PSVGTYSTLL 647
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL 67
R+ ++ N EA + +EAY++ E + L PDS++Y ILI KL
Sbjct: 82 TRQDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKL 141
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ E++ D G P + T LL + +L+ L +M S I
Sbjct: 142 KLACSLYEEMVDR-------GLRPVVLTCKFLLNALCKSGNLELALRYFEKMSS----IP 190
Query: 128 DRSTFTAMVDALL 140
+T+T ++D L
Sbjct: 191 CAATWTILIDGLF 203
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ + NT+ N +I + A ++EA + + E G +PD ++Y LI K LD
Sbjct: 392 RDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLD 451
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NL 125
+ M D Q+ +GG PD FTY+ ++ A L + ++ EM + C NL
Sbjct: 452 IAM-------DMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNL 504
Query: 126 ILDRSTFTAMVD 137
+ T+ M+D
Sbjct: 505 V----TYNIMMD 512
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A + A+++ E V++G P+ ++YNI++ K + +
Sbjct: 468 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLY 527
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ GF PD TY+ ++ H L+ + EM+ N I D +
Sbjct: 528 RDMQN-------AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGL 579
Query: 135 MVDALLYSGSIK 146
+VD +G+++
Sbjct: 580 LVDLWGKAGNVE 591
>gi|449017914|dbj|BAM81316.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 898
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 29/187 (15%)
Query: 17 TIVMNAVIEASREAQRID--EAYQILESVEKG------------LEPDSLSYNILISACI 62
T+V++A+ +A R ID E Y + + + G + P + YNILI C
Sbjct: 505 TLVLDALCKAKRIDTAIDIFENYVVRGAAQDGAPCGGRHQRASRVHPTLVMYNILIGGCA 564
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+T +LD F E+L+ F PD TY LL + + L + E++
Sbjct: 565 RTLRLDKAFEFFERLQS-----PPDNFSPDTHTYCALLDACARCSNTELALHVFEEIERK 619
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
I D + + A++ A+ SG ++ A + G + +R GL P ++ ++M
Sbjct: 620 GEQI-DSAVYGALLAAVARSGDRRL----AFAVRGLMRRR-----GLAPTTAVFANLMEL 669
Query: 183 LAARVDY 189
AA DY
Sbjct: 670 CAADGDY 676
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +DEA ++ E ++KGL P+ +++ LI K K+D+ M +
Sbjct: 210 SVLINGLCKESK----MDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ ++ EM S L D+ T+T +
Sbjct: 266 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEM-SMKGLKPDKITYTTL 317
Query: 136 VDALLYSGSIKVVGLY 151
+D G ++ Y
Sbjct: 318 IDGSCKDGDLETAFEY 333
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 23/197 (11%)
Query: 39 ILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYA 97
+ +++ K GL P +S+N L++ I+ LD + + G PD++TY+
Sbjct: 158 VFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAM-------HASGVQPDVYTYS 210
Query: 98 TLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157
L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 211 VLINGLCKESKMDEANELFXEMLD-KGLVPNGVTFTTLIDGHCKNGKVDLA--------M 261
Query: 158 EIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGH 217
EI K++ S L P Y ++++ L + D ++ M S + P+ +
Sbjct: 262 EIYKQMLSQS-LSPDLITYNTLIYGLCKKGDLKQARNLINEM---SMKGLKPD--KITYT 315
Query: 218 LLMEAALNDGQVDLALD 234
L++ + DG ++ A +
Sbjct: 316 TLIDGSCKDGDLETAFE 332
>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
Length = 800
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 30 AQRIDEAYQI-LESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
A R +E +Q +E +E+ + PD + Y I+I C + + + F +++K+ G
Sbjct: 330 AGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKG------ 383
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
F PD F Y TLL A DL ++ EM N++LD T+T M+ L
Sbjct: 384 -FTPDTFCYNTLLKALCDAGDLDGARSLMSEMVR-NNVVLDIHTYTTMIIGL 433
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 54/196 (27%)
Query: 31 QRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD--------------------V 69
Q +DEA Q+ + VE G P ++YN+LI + +L+ +
Sbjct: 437 QLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRL 496
Query: 70 TMPFNEQLKDNG--QK-----CSSG---------------GFHPDIFTYATLLMGFRHAK 107
T+ N Q++D+ QK C SG G PD+ TY TLL G +
Sbjct: 497 TLGAN-QVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVR 555
Query: 108 DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167
+L L + E++ LD T+ ++D+LL + AL +F +I+ +
Sbjct: 556 NLDGALRLFRELQ-VKGFPLDEITYGTLIDSLLRAHRYN----DALTLFQDIL-----HS 605
Query: 168 GLWPKPHLYVSMMHEL 183
G P +Y SMM L
Sbjct: 606 GGTPSMPIYNSMMRSL 621
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 5 NEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
+E+++R + K +TI+++++ A + + EA +L S+E KG PD ++YN +S
Sbjct: 235 DEMISRGITPNVKTHTILLSSMCNAGQ----LKEAENLLHSMEDKGCPPDEVTYNAFLSG 290
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF----RHAKDLQSLLEIV 116
K ++D + E L+ G F + Y+ L+ G R+ + Q +E++
Sbjct: 291 LCKAGRVDEAIERLEALRHTGT------FVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVL 344
Query: 117 FEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
+ +++L +T M+ +G A F E+ ++ G P Y
Sbjct: 345 EQADVSPDIVL----YTIMIRGCAEAGRTN----DAFAFFDEMKEK-----GFTPDTFCY 391
Query: 177 VSMMHELAARVDYDIVKS 194
+++ L D D +S
Sbjct: 392 NTLLKALCDAGDLDGARS 409
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ ++E+ ++ ++ +AY++L + + G+ PD ++YN L++ K + LD + +L
Sbjct: 508 TLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFREL 567
Query: 78 KDNGQKCSSGGFHPDIFTYATLL 100
+ GF D TY TL+
Sbjct: 568 QVK-------GFPLDEITYGTLI 583
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
IF++ E++ +++ N +I+ + +R++EA Q+++ + +GL+PD +YN L++
Sbjct: 460 IFDQMELLGVSR---SSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLT 516
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK--DLQSLLEIVF 117
+ + E+ D Q +S G PDIFTY TL+ G A D+ S L
Sbjct: 517 YFCRVGDI-------EKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSV 569
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+MK ++L + ++ AL K
Sbjct: 570 QMKG---IVLTPHAYNPVIQALFMRKRTK 595
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I A + I+ A + V KGL PD ++N LI +K D+ M
Sbjct: 332 NTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMF 391
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++K+ G K PD FTY+ L+ + + L+ L ++ EM+S + +
Sbjct: 392 EEMKNKGCK-------PDEFTYSILIDSLCYERRLKEALMLLKEMES-SGCARNAVVYNT 443
Query: 135 MVDALLYSGSIK 146
++D L S I+
Sbjct: 444 LIDGLCKSRRIE 455
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L + + ++ + R++EA + +LE E+G PD +++N L++ + ++ +
Sbjct: 226 LTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDI 285
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRST 131
+ + + G F PD++TY +L+ G + + +EI+ +M + C + T
Sbjct: 286 VDFMIEKG-------FDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSP---NTVT 335
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++ AL I+ A R+ + GL P + +++ L + DI
Sbjct: 336 YNTLISALCKENEIEAATDLA---------RILVSKGLLPDVCTFNTLIQGLCLSKNQDI 386
Query: 192 VKSPYRRM 199
+ M
Sbjct: 387 AMEMFEEM 394
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES--VEKGLEPDSLSYNILISAC 61
ENE+ + I +NA++E ++ + ++L S V +G+ D ++N+LI A
Sbjct: 114 ENELGFKPDTNFYNIALNALVEDNKL-----KLVEMLHSKMVNEGIVLDVSTFNVLIKAL 168
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +L + E++ ++G K PD T+ TL+ GF DL L++ +M
Sbjct: 169 CKAHQLRPAILMLEEMANHGLK-------PDEITFTTLMQGFIEEGDLNGALKMKKQM 219
>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 867
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 27/234 (11%)
Query: 6 EIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISA 60
E++N+ +++ N ++ N +I + + +A ++L+++ EK SYN +I
Sbjct: 540 EVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSYNSIIDG 599
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K D + ++ +NG P++ T+ +L+ GF + + LE++ EMK
Sbjct: 600 FFKEGDTDSAVEAYREMSENG-------ISPNVVTFTSLINGFCKSNRMDLALEMIHEMK 652
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
S +L LD + A++D +K A +F E+++ GL P +Y +++
Sbjct: 653 S-KDLKLDVPAYGALIDGFCKKNDMKT----AYTLFSELLEL-----GLMPNVSVYNNLI 702
Query: 181 HELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
D Y++M D IS ++ +++ L DG + LA D
Sbjct: 703 SGFRNLGKMDAAIDLYKKMVNDG---ISCDLFTYT--TMIDGLLKDGNLILASD 751
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
E W + + N + + ++D A L +E KG+EP+ + YN ++ A + K +D+
Sbjct: 443 ETWIAHGFMCNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDL 502
Query: 70 TMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
F+E L+ G P+ FTY+ L+ GF +D Q+ E++ +M
Sbjct: 503 ARSIFSEMLEK--------GLQPNNFTYSILIDGFFKNQDEQNAWEVINQM 545
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ + NT+ N +I + A ++EA + + E G +PD ++Y LI K LD
Sbjct: 392 RDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLD 451
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NL 125
+ M D Q+ +GG PD FTY+ ++ A L + ++ EM + C NL
Sbjct: 452 IAM-------DMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNL 504
Query: 126 ILDRSTFTAMVD 137
+ T+ M+D
Sbjct: 505 V----TYNIMMD 512
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A + A+++ E V++G P+ ++YNI++ K + +
Sbjct: 468 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLY 527
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ GF PD TY+ ++ H L+ + EM+ N I D +
Sbjct: 528 RDMQN-------AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGL 579
Query: 135 MVDALLYSGSIK 146
+VD +G+++
Sbjct: 580 LVDLWGKAGNVE 591
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTMPFNE 75
+ + +I+ + RI A+++L + KG PD+++Y+IL+ A K + LD FN+
Sbjct: 466 VTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQ 525
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+K G PD+ Y ++ G+ ++ + + + EM NL+ D T+T +
Sbjct: 526 MIKR--------GLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMK-NLVPDIVTYTIL 576
Query: 136 VDALLYSGS 144
+A+ SGS
Sbjct: 577 FNAVFKSGS 585
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
RE N + N++I+ +A + A++I++++ + GL PD ++ IL+ K+K+LD
Sbjct: 353 REGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLD 412
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+ QL ++ G PD+++Y L+ G ++ + + ++ +M NL+
Sbjct: 413 QAILLFNQLVES-------GLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMH-LKNLVPH 464
Query: 129 RSTFTAMVDALLYSGSI 145
T++ ++D L SG I
Sbjct: 465 IVTYSCLIDGLCRSGRI 481
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 29 EAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+++R+D+A + VE GL PD SY ILI C ++++ M L+D K
Sbjct: 407 KSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNL---LRDMHLK---- 459
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
P I TY+ L+ G + + + ++ EM L D T++ ++DAL +
Sbjct: 460 NLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLP-DTITYSILLDALWKKQHLD- 517
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
A+ +F +++KR GL P Y M+ D + +R M
Sbjct: 518 ---EAVFLFNQMIKR-----GLEPDVMCYTIMIDGYCKSERIDEAINLFREM 561
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+TI + +++A + Q +DEA + + +++GLEPD + Y I+I K++++D + F
Sbjct: 499 DTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLF 558
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLL 100
E N PDI TY L
Sbjct: 559 REMHMKN--------LVPDIVTYTILF 577
>gi|449524124|ref|XP_004169073.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Cucumis sativus]
Length = 363
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ A R+DE I S+ E+G+ PD +SYN LI++ K +LD+++ + ++
Sbjct: 218 NIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREM-- 275
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ G PD+ TY L+ + +L+ L ++ EMK
Sbjct: 276 -----VAMGIEPDLLTYTALIESYGRFGNLEEALTLLKEMK 311
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ + NT+ N +I + A ++EA + + E G +PD ++Y LI K LD
Sbjct: 392 RDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLD 451
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NL 125
+ M D Q+ +GG PD FTY+ ++ A L + ++ EM + C NL
Sbjct: 452 IAM-------DMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNL 504
Query: 126 ILDRSTFTAMVD 137
+ T+ M+D
Sbjct: 505 V----TYNIMMD 512
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A + A+++ E V++G P+ ++YNI++ K + +
Sbjct: 468 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLY 527
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ GF PD TY+ ++ H L+ + EM+ N I D +
Sbjct: 528 RDMQN-------AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGL 579
Query: 135 MVDALLYSGSIK 146
+VD +G+++
Sbjct: 580 LVDLWGKAGNVE 591
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
++ N++I+ + + +D+A I++ V+ G+ PD +Y+++I K+K +D EQ
Sbjct: 84 LICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQ 143
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ + G + P+ TY +L+ G+ + + VF+ S C +I + +
Sbjct: 144 MVEAGTR-------PNSITYNSLIHGYSISGMWNESVR-VFKQMSSCGVIPTVDNCNSFI 195
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL--YVSMMHELAARVD 188
AL G A CIF +V + PKP + Y +M+H A D
Sbjct: 196 HALFKHGRTN----EAKCIFDSMVLK-------GPKPDIISYSTMLHGYATATD 238
>gi|357130244|ref|XP_003566760.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Brachypodium distachyon]
Length = 579
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ NA++ A A R DE + + + + P++ ++NIL++A + + + F
Sbjct: 178 DTVAFNALLAALSRAGRFDELWAARAVMARAEVRPNTHTFNILVTALCRGEDAERAQGFL 237
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+L++ G F PD+ TY TLL G+ LQ L + F + + D + T
Sbjct: 238 EELEEQG-------FEPDVVTYNTLLSGYCRRGKLQDALHL-FGVMPPRGVEPDLVSHTV 289
Query: 135 MVDALLYSGSIK 146
++D L +G +
Sbjct: 290 LMDGLCKAGRLN 301
>gi|357112772|ref|XP_003558181.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic-like [Brachypodium distachyon]
Length = 849
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT V N+++ A+ A + + + ++K G+ PD SYNIL+ C ++ D
Sbjct: 306 NTHVFNSLMNAN--AHSLSYNLSVYKHMQKLGVSPDLASYNILLKTCCNAREFDSAQEIY 363
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILDRST 131
E++K Q +G D+FTY+T++ F AK + I +M++ NL+ S
Sbjct: 364 EEMKKKEQ---NGLLKLDVFTYSTMMKVFAEAKMWKMASNIKEDMRAVGARLNLVTWSSL 420
Query: 132 FTAMVDALLYSGSIKVV 148
A ++ L G+I+++
Sbjct: 421 INAYANSGLVDGAIEIL 437
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN + +++I A + +D A +ILE + G +P + +NI+++A +K+++ D
Sbjct: 411 RLNLVTWSSLINAYANSGLVDGAIEILEEMIRDGCQPTAPCFNIILTALVKSRQYDRAFR 470
Query: 73 FNEQLKDNGQKCS----SGGFHPDIFTY 96
K++G + S G PD FT+
Sbjct: 471 LFYSWKESGIRISLSLEQKGCLPDNFTF 498
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILES--VEKGLEPDSLSYNILISACIKTKKL 67
R + + + N++I A R+D+A +L+ +E G PD ++YN IS K KL
Sbjct: 108 RSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKL 167
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNL 125
D + E++ GG PD+ T+ +++ G A + ++ M + C
Sbjct: 168 DKGLEMLEEM-------DRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGC--- 217
Query: 126 ILDRSTFTAMVDALLYSGSIKVV 148
+ D T++ M+D L + + V
Sbjct: 218 VPDSLTYSIMLDNLSRANRLDTV 240
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
E E ++R + + ++I +A RID+A+Q+ + +E+G PDSL+Y+I++
Sbjct: 171 LEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDN 230
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ +LD E + +G S TYA L+ A D++S +E
Sbjct: 231 LSRANRLDTVEEVLEHMVKSGHYALSA-------TYAPLIHALIRAGDIES-ASWAYEQA 282
Query: 121 SCCNLILDRSTFTAMVDALLYSG 143
+++ T A + AL SG
Sbjct: 283 MEAGCVMEVYTHNAFIGALCRSG 305
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA I A + + A IL +E G P+ LSYN +I K+ +D + ++ D
Sbjct: 295 NAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLD 354
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
SG PD+ + TL+ GF A L +++ EMK+ + D T+ M+D
Sbjct: 355 ------SGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQ 408
Query: 140 LYSGSIK 146
GS+K
Sbjct: 409 SKFGSLK 415
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N + A+I+ +A+R +A Q ++ + G EPD ++YN LI C+ + D +
Sbjct: 79 NVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVL 138
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E + ++G+ PD+ TY T + G A L LE++ EM + D TF
Sbjct: 139 QELMIESGRI-------PDVVTYNTFISGLCKAGKLDKGLEMLEEMDR-GGISPDVVTFC 190
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
+++ L + I A +F +++R C P Y M+ L+ D V+
Sbjct: 191 SIISGLCKANRID----DAFQVFKGMLERGC-----VPDSLTYSIMLDNLSRANRLDTVE 241
Query: 194 SPYRRM 199
M
Sbjct: 242 EVLEHM 247
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
H++L+ + N +I +A++ A ++L + G + ++Y LI K+ LD
Sbjct: 4 RHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDA 63
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILD 128
+++ D G C+ P++ TY L+ G A+ ++ V M +S C D
Sbjct: 64 AQALLQKMADAG--CA-----PNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCE--PD 114
Query: 129 RSTFTAMVDALLYSGSIKVVGL 150
T+ +++ L + + GL
Sbjct: 115 LVTYNSLIHGLCMANRMDDAGL 136
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I A + R D+A + +S+E +G++P+++++N LI+ K+ K+D+ F E++
Sbjct: 291 NALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKM-- 348
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G PD +TY++ + K Q L + EM
Sbjct: 349 -----VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEM 383
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAVI + + A + L V G PD+ ++N LI +T ++DV +D
Sbjct: 15 NAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVA-------RD 67
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
K GF D+ +YA L+ GF + +E+ EM D + A+V L
Sbjct: 68 LFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ-----PDMHMYAALVKGL 122
Query: 140 LYSG 143
+G
Sbjct: 123 CKAG 126
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
W+ +T AV++ ++ EA ++L E EKGL P ++ +I+A K ++ +
Sbjct: 143 WRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDAL 202
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E +K G K P+++TY L+ GF + + + ++ +M+ C + D T
Sbjct: 203 RVLELMKLRGCK-------PNVWTYNALVQGFCNEGKVHKAMALLNKMR-VCGVNPDAVT 254
Query: 132 FTAMVDALLYSGSIK 146
+ ++ G I+
Sbjct: 255 YNLLIRGQCIDGHIE 269
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N++++A + +D+A +L + EKG++PD +Y +LI+ K +LD
Sbjct: 407 NIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVF 466
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E L G+ P+I+TY +L+ GF + L ++ +MK
Sbjct: 467 EDL-------LVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMK 505
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 26/144 (18%)
Query: 6 EIVNREHWKL---NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISAC 61
+++ R KL N ++ + +I++ + + +++A+ + E V K + PD ++Y+ LIS
Sbjct: 184 QLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGF 243
Query: 62 IKTKKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGF------RHAKDLQSLLE 114
KL + FN + DN +P+++T++ L+ GF R AK++ +++
Sbjct: 244 CVVGKLKYAVDLFNRMISDN--------INPNVYTFSILIDGFCKEGKVREAKNVLAVM- 294
Query: 115 IVFEMKSCCNLILDRSTFTAMVDA 138
MK N+ LD T+ +++D
Sbjct: 295 ----MKK--NVKLDVVTYNSLMDG 312
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTK 65
++ +++ KL+ + N++++ +++++A + + ++G+ PD SY+I+I+ K K
Sbjct: 293 VMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIK 352
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+D M E++ C P++ TY +L+ G + LE+V EM
Sbjct: 353 MVDEAMKLFEEM-----HCKQ--IFPNVVTYNSLVDGLCKSGRTSCALELVDEM 399
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILIS 59
F ++ + W++N IV+N +++ +A+R+ EA IL E G PD +SYN L+
Sbjct: 114 FATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLK 173
Query: 60 ACIKTKKLDVTMPFNEQLKDN-GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K+ + + + D+ G+ C P++ +YA ++ GF + + E
Sbjct: 174 GFCNEKRAEEALELLHMMADSQGRSCP-----PNVVSYAIVINGFFTEGQVDKAYNLFLE 228
Query: 119 MKSCCNLILDRS------TFTAMVDAL 139
M +DR T+T ++D L
Sbjct: 229 M-------MDRGIQPNVVTYTTVIDGL 248
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQ 76
+ N + A + IDEA I + ++GL PD ++Y LI A K ++ D + FN+
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQM 439
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + G P+IF + +L+ G + E FEM
Sbjct: 440 MNE--------GVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEM 474
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 42/250 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + VI ++D+AY + LE +++G++P+ ++Y +I K + +D
Sbjct: 202 NVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS------------- 121
+Q+ D G K PD TY L+ G+ + ++ ++ EM +
Sbjct: 262 QQMIDKGVK-------PDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSL 314
Query: 122 ----CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS----------NP 167
C N + F + D+++ G V +Y + I G K S
Sbjct: 315 LNYLCNNGRCREARF--LFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVEN 372
Query: 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDG 227
GL P H++ + A + D + +M +SP+V L++A G
Sbjct: 373 GLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQG---LSPDVVNYGA--LIDALCKLG 427
Query: 228 QVDLALDKLS 237
+VD A+ K +
Sbjct: 428 RVDDAVLKFN 437
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
N I + + W N + N ++ + +DEA+++ +S+ K + + ++NI+I A K
Sbjct: 613 NMITSGKQW--NIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFK 670
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ + NE SS G PD+FTY + L+ ++ M+
Sbjct: 671 SGR-------NEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGE 158
R A+V LL+ G I G Y LC E
Sbjct: 724 TTPNSR-MLNALVRRLLHRGDITRAGAY-LCKLDE 756
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 32 RIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQLKDNGQKCSSGGF 89
RIDEA + L+ + GL+PD +YN L+ + ++D F E L++ G
Sbjct: 533 RIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRN--------GI 584
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
P + TY+T+L G + E+ M
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNM 614
>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
Length = 484
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
V R +N ++ AQ++DEA +EK G+ P+ ++N L+ A K+K
Sbjct: 126 VMRREGAVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKN 185
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNL 125
+ +++ F PD TY+ LL G+ A +L + E+ EM + C
Sbjct: 186 VRKAQEIFDKMNSR--------FSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCE- 236
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
D T+ MVD+L +G ++ A+ + ++ R C P ++Y ++H
Sbjct: 237 -PDIVTYGIMVDSLCKTGRVE----EAVRVVQDMTSRGCQ-----PTTYIYSVLVH 282
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ + NT+ N +I + A ++EA + + E G +PD ++Y LI K LD
Sbjct: 509 RDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLD 568
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NL 125
+ M D Q+ +GG PD FTY+ ++ A L + ++ EM + C NL
Sbjct: 569 IAM-------DMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNL 621
Query: 126 ILDRSTFTAMVD 137
+ T+ M+D
Sbjct: 622 V----TYNIMMD 629
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A + A+++ E V++G P+ ++YNI++ K + +
Sbjct: 585 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLY 644
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ GF PD TY+ ++ H L+ + EM+ N I D +
Sbjct: 645 RDMQN-------AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGL 696
Query: 135 MVDALLYSGSIK 146
+VD +G+++
Sbjct: 697 LVDLWGKAGNVE 708
>gi|242053243|ref|XP_002455767.1| hypothetical protein SORBIDRAFT_03g024580 [Sorghum bicolor]
gi|241927742|gb|EES00887.1| hypothetical protein SORBIDRAFT_03g024580 [Sorghum bicolor]
Length = 558
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N+++ A A R DE + + V G+ PD+ ++NIL++A + + + F E+L++
Sbjct: 177 NSLLAALSRAGRFDELWAARGAMVRAGVRPDARTFNILVAALCRGEDAERAQGFLEELEE 236
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
GF PD+ TY TLL G+ LQ L +
Sbjct: 237 Q-------GFEPDVVTYNTLLAGYCRKGRLQDALHL 265
>gi|124360267|gb|ABN08280.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 349
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ I N V++ R+DE + S+ E G PD++SYN LI+ K + D+ +
Sbjct: 194 LDLITYNIVLDILGRKGRVDEMLDMFASLKETGFVPDTISYNTLINGLRKVGRSDMCFEY 253
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+++K+NG + PD+ TY L+ A +++ L+ EMK
Sbjct: 254 FKEMKENGNE-------PDLLTYTALIDISGRAGNIEESLKFFMEMK 293
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N +I R+ R D ++ + + E G EPD L+Y LI + ++ ++ F
Sbjct: 230 DTISYNTLINGLRKVGRSDMCFEYFKEMKENGNEPDLLTYTALIDISGRAGNIEESLKFF 289
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++K G P I Y +L+ ++++ E++ EM S
Sbjct: 290 MEMK-------LKGILPSIQIYRSLIHNLNKTENIELATELLEEMNS 329
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPFN 74
T V+N ++ RE Q +D+AY + ++ +++G PD ++Y+ +ISA KT+ +D T F
Sbjct: 211 TTVINGLL---REGQ-LDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFT 266
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI-LDRSTFT 133
+K+ G PD Y +L+ G+ + + + I +M C + + D T+T
Sbjct: 267 RMVKN--------GVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKM--CRHGVEPDVVTYT 316
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
A++D L +G A IF +VKR G P Y +++H A
Sbjct: 317 ALMDYLCKNGK----STEARKIFDSLVKR-----GHKPDSTTYGTLLHGYA 358
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+++ ++ +L + N ++ A + ++DEA + ++ ++GL PD ++Y ++
Sbjct: 371 DLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTA 430
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
++D + LK S G P+I + TL+ G + E+ FEM +
Sbjct: 431 GRVDDALSQFNSLK-------SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGI 483
Query: 123 CNLILDRSTFTAMVDALLYSGSI 145
C LD F A++ L G +
Sbjct: 484 C---LDTIFFNAIMGNLCKKGRV 503
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+TI NA++ + R+ EA + + V G+EP++ +YN LI K+D M
Sbjct: 485 LDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 544
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ NG K P TY T++ G+ ++ L ++ EM
Sbjct: 545 LGVMVFNGVK-------PSDVTYNTIINGYSQNGRIEDGLTLLREM 583
>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K+N++V NA+I+ R+D+A +I + + G PD ++YNIL++ C + +D +
Sbjct: 221 KVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVR 280
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK--DLQSLLEI-VFEMKSCCNLILDR 129
E ++ G PD+++Y LL GF A D L+ + + K C+++
Sbjct: 281 LVETME-------RSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYN 333
Query: 130 STFTAMVDA 138
+ TA A
Sbjct: 334 TVITAFCKA 342
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKK-LDVTMPF 73
+ I AV++ + ++D A+ + + VE G+ PD +SYN L++ KT + +D F
Sbjct: 398 DCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLF 457
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
+E S G +PD TY ++ G K +
Sbjct: 458 DEM--------QSKGLYPDEVTYKLIVGGLIRGKKIS 486
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 32 RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
++++A ++ ES+ ++G++ + SYNILI+ K +K+D F E+++ G K
Sbjct: 1240 QLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLK------- 1292
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
P TY TL+ + +++ ++ EM++C L ST+ ++D L +G ++
Sbjct: 1293 PSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQF-LKLSTYCVLLDGLCKNGHLE 1347
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 33 IDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I +A Q+ E +KGL D+ +Y ILI+ K +K + + +E++K N C
Sbjct: 1032 IPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGN---CKG----- 1083
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D+FTY ++ L++ EM ++ D +++++D L G +K
Sbjct: 1084 DVFTYGMIIDALCKDGMTTEALDMFSEMIG-AGILPDVVVYSSLMDGLCRFGRLK----E 1138
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
AL F E+ R G+ + Y S++H L+
Sbjct: 1139 ALEFFKEMEGR-----GISADVYTYNSLIHGLS 1166
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTK 65
I EH K N V + +++ A +++EA++ + + K GLEPD+++YNILI+
Sbjct: 1356 IKKTEH-KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKG 1414
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
L + Q+++ G C PD T+ ++ ++ ++++ EM++
Sbjct: 1415 MLSEAVKLLWQMEEKG--CL-----PDSITFNVIIQNLLKENEIHEAIQLLEEMRN 1463
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 34/157 (21%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + A RID+A Q+LE + E G PD ++YN ++S K ++D E L++
Sbjct: 281 NIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRN 340
Query: 80 NGQ-----KCSS-----------------------GGFHPDIFTYATLLMGFRHAKDLQS 111
G CS+ G PD+ Y L+ GF A L
Sbjct: 341 GGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDK 400
Query: 112 LLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIK 146
L EM K C ++ T++ ++D L S ++
Sbjct: 401 SLAFFSEMLDKGCVPTVI---TYSIVIDKLCKSARVR 434
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 17/139 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD 68
+ H + I +++A ++ RI +A ILE +E G P+ ++YN LI+ K +D
Sbjct: 95 QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMD 154
Query: 69 -VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--N 124
+ FN+ L+++ CS PD+FTY L+ G+ + Q +++ EM K C N
Sbjct: 155 EAVVLFNQMLENS---CS-----PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPN 206
Query: 125 LILDRSTFTAMVDALLYSG 143
I T+ ++D+L+ SG
Sbjct: 207 FI----TYNTLMDSLVKSG 221
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA 60
F +++ R K + N +I+ + ++D AY++ + ++G PD +YNI+IS
Sbjct: 227 FNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISG 286
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ ++D E++ + G PD+ TY +++ G A + E V+E+
Sbjct: 287 ACRANRIDDARQLLERM-------TEAGCPPDVVTYNSIVSGLCKASQVDEAYE-VYEVL 338
Query: 121 SCCNLILDRSTFTAMVDALLYS 142
LD T + ++D L S
Sbjct: 339 RNGGYFLDVVTCSTLIDGLCKS 360
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
+E E++ + L+ + + +I+ +++R+D+A ++L +E+ G PD ++Y ILI
Sbjct: 332 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 391
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K +LD ++ F ++ D G P + TY+ ++
Sbjct: 392 FCKADQLDKSLAFFSEMLDK-------GCVPTVITYSIVI 424
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQL 77
V N +I+ + R+D A +++ P ++Y IL+ A K+ ++ D ++ + +
Sbjct: 70 VYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMI 129
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGF 103
+ G P++ TY TL+ GF
Sbjct: 130 E--------AGCAPNVVTYNTLINGF 147
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N ++ A RID+AY + E + KG+ P ++YN ++ +TK+
Sbjct: 550 VTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLN 609
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ ++G KC DI+TY +L G + + ++ F+ L L+ TFT M+
Sbjct: 610 MINSGTKC-------DIYTYNIILNGLCKSNCVDEAFKM-FQSLCSKGLQLNIITFTIMI 661
Query: 137 DALLYSG 143
ALL G
Sbjct: 662 GALLKGG 668
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + VI ++D+ Y + LE +++G+ PD ++Y +I K + D
Sbjct: 198 NVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVF 257
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ DN GF P+ +TY L+ G+ + +++++ EM S L D T+ +
Sbjct: 258 QQMIDN-------GFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEM-SARGLKPDCYTYGS 309
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+++ L +G + + F ++++ G+ PK Y ++H A +
Sbjct: 310 LLNYLCKNGRCREARFF----FDSMIRK-----GIKPKVSTYGILIHGYATK 352
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILIS 59
F ++ + W+++ I +N +++ +R+ EA +L E G PD++SY IL+
Sbjct: 110 FAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLK 169
Query: 60 ACIKTKKLDVTMPFNEQLKDN-GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K+ + + + D+ G++C P++ +Y+ ++ GF + + E
Sbjct: 170 GLCNEKRAEEALELLHMMADDHGRRCP-----PNVVSYSIVINGFFTEGQVDKPYNLFLE 224
Query: 119 MKSCCNLILDRS------TFTAMVDAL 139
M +DR T+T ++D L
Sbjct: 225 M-------IDRGIPPDVVTYTTVIDGL 244
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I A +IDEAY+I ++ +G PD ++Y +LI A +L+
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K NG K PD Y TLL F DL + E +M++ + D TFT
Sbjct: 321 VKMKANGHK-------PDQVIYITLLDKFNDFGDLDTFKEFWSQMEA-DGYMPDVVTFTI 372
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
+VD L + A F + K+ G+ P H Y +++ L A R++
Sbjct: 373 LVDVLCKARDFD----EAFATFDVMRKQ-----GILPNLHTYNTLICGLLRAGRIE 419
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N ++ ++ +I E +++ E + + +PD+++YNI+IS+ K+ LD + F
Sbjct: 822 DAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFF 881
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
L S F P TY L+ G L+ + + EM
Sbjct: 882 YDL-------VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM 919
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 30 AQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
A R+DEA Y E GL+PD ++YN +I+ K+++++ + ++++ G
Sbjct: 976 AGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNR-------G 1028
Query: 89 FHPDIFTYATLLM 101
PD++TY +L++
Sbjct: 1029 IVPDLYTYNSLML 1041
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N +I + + A Q+ + V +G+ PD SY IL+ ++D +
Sbjct: 925 KPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALY 984
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ +LK S G PD Y ++ G ++ ++ L + EM++ ++ D T+
Sbjct: 985 YFNELK-------STGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRN-RGIVPDLYTY 1036
Query: 133 TAMVDALLYSGSIK 146
+++ L +G ++
Sbjct: 1037 NSLMLNLGLAGMVE 1050
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 22/199 (11%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
+ + + LN N +I ++ EA ++ V +GL+P +Y+ L+ A K +
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRD 242
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
++ M ++++D G P+++T+ + A + EI M + C
Sbjct: 243 SEMVMVLLKEMEDLG-------LRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGP 295
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
D T+T ++DAL +G ++ E+ ++ +N G P +Y++++ +
Sbjct: 296 ---DLVTYTVLIDALCNAGQLENA--------KELFVKMKAN-GHKPDQVIYITLLDKFN 343
Query: 185 ARVDYDIVKSPYRRMWPDS 203
D D K + +M D
Sbjct: 344 DFGDLDTFKEFWSQMEADG 362
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 21/207 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
E+V R + + + N +I + R D+A QI ++ G PD+++Y +LI + K
Sbjct: 416 EMVKR-GFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKA 474
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K++ ++ D G K P + TY+ L+ + A + E F
Sbjct: 475 SKVEEAANVMSEMLDAGVK-------PTLHTYSALICAYAKAGKREEAEE-TFNCMRRSG 526
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+ DR ++ M+D L +K A+ ++ E+++ G P LY MMH L
Sbjct: 527 IKPDRLAYSVMLDFFLRFNEMK----KAMGLYHEMIRE-----GFTPDNGLYEVMMHALV 577
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEV 211
+D+V R M + ++P+V
Sbjct: 578 RENMWDVVDRIIRDM--EELSGMNPQV 602
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ R + ++L+ + E+G PD +S+N LI+A +K+ ++ + QL
Sbjct: 251 VYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLAL--QL 308
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
+ ++ G PDI TY TL+ +L+ + + +M+S D
Sbjct: 309 LNEVRR---SGIRPDIITYNTLISACSRESNLEEAVAVFSDMES----------HRCQPD 355
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
Y+ I V G A E + + + G +P Y S+++ + + + V+
Sbjct: 356 LWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVR 411
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 21/186 (11%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
NT++ NA +++ A + A Q+L V + G+ PD ++YN LISAC + L+ +
Sbjct: 287 FNTLI-NARMKSG--AMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAV 343
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ + +C PD++TY ++ + + E+ E++S D T+
Sbjct: 344 FSDMESH--RC-----QPDLWTYNAMISVYGRCARARKAEELFKELES-KGFFPDAVTYN 395
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
+++ A G+ + V I E+VKR G Y +++H + +D
Sbjct: 396 SLLYAFSREGNTEKVR----DICEEMVKR-----GFGQDEMTYNTIIHMYGKQGRHDQAM 446
Query: 194 SPYRRM 199
YR M
Sbjct: 447 QIYRDM 452
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
W N ++ +V A++ +E ++ LES KG PD+++YN L+ A +
Sbjct: 357 WTYNAMI--SVYGRCARARKAEELFKELES--KGFFPDAVTYNSLLYAFSREGN------ 406
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E+++D ++ GF D TY T++ + ++I +MKS D T+
Sbjct: 407 -TEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKS-SGRNPDAVTY 464
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
T ++D+L + ++ A + E++ + G+ P H Y +++
Sbjct: 465 TVLIDSLGKASKVE----EAANVMSEML-----DAGVKPTLHTYSALI 503
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 32 RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
R+DE Y LE G EPD ++Y ILISA K KK D + +++ + C P
Sbjct: 279 RLDEVY--LEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEME--AKNCK-----P 329
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
Y TL+ G K L LE FE C + T+ ++V A +S I
Sbjct: 330 TPHVYCTLINGLGSEKRLSEALEF-FERFKSCGFTPEAPTYNSLVGAYCWSMRI 382
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK 63
NE+ +R+ +T + + A A++++EA + E +E+ G + ++ +N L+ K
Sbjct: 181 NEMKSRKLLNKDTFALISRRHA--RARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCK 238
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
++ ++ +++K F PDI +Y LL G+ +L L E+ EMK
Sbjct: 239 SRHVEKANKVFDKMKKRR-------FVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKY-D 290
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
D T+ ++ A Y + K A+ +F E+ + C P PH+Y ++++ L
Sbjct: 291 GFEPDVVTYGILISA--YCKAKKYDA--AIELFHEMEAKNCK-----PTPHVYCTLINGL 341
Query: 184 AA 185
+
Sbjct: 342 GS 343
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
+ NT+ + V++ + R+++A +L + + G PD+++YN LI K ++L +
Sbjct: 575 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG 634
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NLILDR 129
++ + GFHP + TY TL G + +EI+ M + C N I
Sbjct: 635 LLREMLE-------AGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAI--- 684
Query: 130 STFTAMVDALLYSGSI 145
T++++VD L +G +
Sbjct: 685 -TYSSIVDGLCKAGRV 699
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N+++ +A+R+DEA+++ + + E G D ++YNIL+ K +++
Sbjct: 309 NVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHV 368
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E ++ + G P++ T++TL+ G +A + E+ M + + +R T+
Sbjct: 369 ELMR------RTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAF 422
Query: 135 MVDALLYSG 143
+++ L +G
Sbjct: 423 LLEGLCKAG 431
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I +A+I+ +A RIDEAY+ LE + G PD ++++ILI+ ++D +
Sbjct: 718 HVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELF 777
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + G K DI+ Y ++ + + + ++ EMK+
Sbjct: 778 CGMAERGCK-------ADIYAYNAMINAYCLKGEFSAAYALLEEMKT 817
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N+V++ + QRI +A+ + + ++E+G P+ ++Y+ LI K K+D +
Sbjct: 507 DVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLL 566
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ + G + ++ TY+T++ G ++ + ++ +M+ + D T+
Sbjct: 567 AKMVELGCRANT-------VTYSTVVDGLLKVGRMEDAVVVLRQMRD-AGCLPDAVTYNT 618
Query: 135 MVDALLYSGSIK-VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
++D ++ VGL R G P Y ++ H L +D
Sbjct: 619 LIDGFFKRQRLREAVGLL----------REMLEAGFHPSVVTYTTLCHGLCRSGRFD 665
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYN-ILISACIKTKKLDVTMPFNE 75
+ N ++ ++ + +A +LE +E GL PD +++N +L C + + LD F
Sbjct: 474 VTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR 533
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
L+ G P++ TY+TL+ G + L+++ +M + T++ +
Sbjct: 534 ALER--------GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVE-LGCRANTVTYSTV 584
Query: 136 VDALLYSGSIK 146
VD LL G ++
Sbjct: 585 VDGLLKVGRME 595
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 5 NEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
+E+V+R +++T++++A+ E R +DEA+ + V G PD+++YN ++
Sbjct: 130 DEMVDRGFVPDVEIHTVLLHALCELGR----VDEAWFFFQQVLLIGFTPDAVTYNTMVDG 185
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K +L+ + L ++ P +FT+ + G A +L E F+
Sbjct: 186 LYKAGRLEAAGMVLQLLAESFSS-------PTVFTFTIAVDGLSKAGNLTGAYEF-FDSM 237
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKV 147
+ + T+ A++D L +G + +
Sbjct: 238 PQTGVSPNTVTYDALIDGLCKAGKLDI 264
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NT+ VI+A RIDEA S+ + D +SYN LI++ + +++ +E
Sbjct: 823 NTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCR-DEISYNTLITSLVASRR-------SE 874
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q + + + G PD Y T++ G A + +++ EM+S + D T+T M
Sbjct: 875 QALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGH-SPDLRTYTIM 933
Query: 136 VDAL 139
+ L
Sbjct: 934 ISGL 937
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + K L+PD++ Y+ LI A K K+D D + S G P I Y+T++
Sbjct: 952 EMLRKNLKPDAIVYSSLIDAFCKADKVD----------DAWKLLRSSGIEPTITMYSTMV 1001
Query: 101 MGFRHAKDLQSLLEIVFEMKS 121
+ LE++ EMKS
Sbjct: 1002 DSLCKNRGTDKALEVIREMKS 1022
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N V++ + +++A ++ + VE G +PD++SY+ILI K KLD ++
Sbjct: 150 DVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKIL 209
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFT 133
++ + G+ P++ T++TL+ G +L+ LE+ M ++ C ++ T+T
Sbjct: 210 SEM-----AMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCK--PNKYTYT 262
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
++ L + + + A +F E + + C + P Y S++ R D +
Sbjct: 263 TLIAGLCRAEKV----IQARELF-EKMTQAC----IPPDAVAYNSLIAGYCKRGSMDEAE 313
Query: 194 SPYRRM 199
YR M
Sbjct: 314 KLYREM 319
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +++I++ + + +E+Y++LE + G PD ++N ++ ++ +
Sbjct: 115 NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNM------- 167
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRSTFT 133
E+ ++ Q G+ PD +Y L+ G L L+I+ EM + + TF+
Sbjct: 168 EKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFS 227
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ L +G ++ AL +FG +++ C P + Y +++ L
Sbjct: 228 TLIHGLCRTGELE----KALEVFGSMLEAGCK-----PNKYTYTTLIAGL 268
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE--KGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ + N++I + +DEA ++ + GL+P +++N LI K KL
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRA--- 348
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
NE + + G K G D TY L+ G A L LE+ +M+ +LD +
Sbjct: 349 NELVAEMGTK----GLAADTCTYRILIAGLSRATKLDEALEVYKQMRE-KKFLLDPVSCV 403
Query: 134 AMVDALLYSGSI 145
+ V L +G+I
Sbjct: 404 SFVGGLCKTGNI 415
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMP 72
K N +I A+++ +A ++ E + + + PD+++YN LI+ K +D
Sbjct: 255 KPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEK 314
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ G P I T+ TL+ GF L E+V EM + L D T+
Sbjct: 315 LYREMS------GGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGT-KGLAADTCTY 367
Query: 133 TAMVDAL 139
++ L
Sbjct: 368 RILIAGL 374
>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
Length = 532
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 21/134 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ N I A + R+DEA + ++GL PD +SY +I K +LD M Q+
Sbjct: 298 IFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQM 357
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS------T 131
D+ G PDI + L+ GF + E+ +EM +DR
Sbjct: 358 IDD-------GLSPDIVVFTNLIHGFSMYGKWEKAEELFYEM-------MDRGIRPTVVV 403
Query: 132 FTAMVDALLYSGSI 145
FT M+D L G +
Sbjct: 404 FTTMIDKLFKEGKV 417
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 93/231 (40%), Gaps = 54/231 (23%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + Q +D+A ++L + +K + PD +YN L+ + + +L +
Sbjct: 155 DVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRIL 214
Query: 75 EQLKDNGQK-------------CSSGGF---------------HPDIFTYATLLMGFRHA 106
+Q+ +GQ C GG +P++ TY LL G+
Sbjct: 215 KQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATK 274
Query: 107 KDLQSLLEIVFEMKSCCNLIL------DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
DL EM + +L++ D F + A + G + A+ F ++
Sbjct: 275 GDL-------VEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLD----EAMLTFNKMR 323
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV 211
++ GL P Y +M+ L D S + +M D +SP++
Sbjct: 324 QQ-----GLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDG---LSPDI 366
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I A +IDEAY+I ++ +G PD ++Y +LI A +L+
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K NG K PD Y TLL F DL + E +M++ + D TFT
Sbjct: 321 VKMKANGHK-------PDQVIYITLLDKFNDFGDLDTFKEFWSQMEA-DGYMPDVVTFTI 372
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
+VD L + A F + K+ G+ P H Y +++ L A R++
Sbjct: 373 LVDVLCKARDFD----EAFATFDVMRKQ-----GILPNLHTYNTLICGLLRAGRIE 419
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 30 AQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
A R+DEA Y E GL+PD ++YN +I+ K+++++ + ++++ G
Sbjct: 976 AGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNR-------G 1028
Query: 89 FHPDIFTYATLLM 101
PD++TY +L++
Sbjct: 1029 IVPDLYTYNSLML 1041
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N ++ ++ +I E +++ E + + +PD+++YNI+IS+ K+ LD + F
Sbjct: 822 DAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFF 881
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
L S F P TY L+ G L+ + + EM
Sbjct: 882 YDL-------VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM 919
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N +I + + A Q+ + V +G+ PD SY IL+ ++D +
Sbjct: 925 KPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALY 984
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ +LK S G PD Y ++ G ++ ++ L + EM++ ++ D T+
Sbjct: 985 YFNELK-------STGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRN-RGIVPDLYTY 1036
Query: 133 TAMVDALLYSGSIK 146
+++ L +G ++
Sbjct: 1037 NSLMLNLGLAGMVE 1050
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 22/199 (11%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
+ + + LN N +I ++ EA ++ V +GL+P +Y+ L+ A K +
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRD 242
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCN 124
++ M ++++D G P+++T+ + A + EI M + C
Sbjct: 243 SEMVMVLLKEMEDLG-------LRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGP 295
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
D T+T ++DAL +G ++ E+ ++ +N G P +Y++++ +
Sbjct: 296 ---DLVTYTVLIDALCNAGQLENA--------KELFVKMKAN-GHKPDQVIYITLLDKFN 343
Query: 185 ARVDYDIVKSPYRRMWPDS 203
D D K + +M D
Sbjct: 344 DFGDLDTFKEFWSQMEADG 362
>gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
Length = 993
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 24/181 (13%)
Query: 8 VNREHWKLNTIVMNA-VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK 66
+ RE + + + ++ + RE ++ + E +EKG+ PD++SY ILI +
Sbjct: 149 MEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGY 208
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
++ + F E++K +G K P++ TY +++GF L + F+M +
Sbjct: 209 VEKAIGFLEKMKKDGLK-------PNLVTYTAIMLGFCKKGKLDEAYTL-FKMVENLGIE 260
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFG---EIVKRVCSNPGLWPKPHLYVSMMHEL 183
+D + ++D G I C+FG ++ KR G+ P Y S+++ L
Sbjct: 261 VDEFMYVTLIDGFCTRGDID-------CVFGLLEDMEKR-----GISPSIVTYNSIINGL 308
Query: 184 A 184
Sbjct: 309 C 309
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 35 EAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
+A Q+ E V KG P+ YN LI K ++ + L D +C PD
Sbjct: 727 DAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNL---LIDLKARC----IKPDE 779
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
FT + L+ G+ H D++ L FE K +++ D F +V L G ++
Sbjct: 780 FTVSALINGYCHKGDMEGALGFFFEFKK-KDILPDFLGFMYLVRGLCAKGRME 831
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 31/168 (18%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
E + ++ K N + A++ + ++DEAY + + VE G+E D Y LI
Sbjct: 217 EKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTR 276
Query: 65 KKLDVTMPFNEQLKDNGQK-------------CSSG----------GFHPDIFTYATLLM 101
+D E ++ G C +G G D T++TLL
Sbjct: 277 GDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIAGDAVTFSTLLH 336
Query: 102 GFRHAKDLQSLLEIVFEMKS---CCNLILDRSTFTAMVDALLYSGSIK 146
G+ ++++ +LE ++ C +L++ + ++ ALL G+++
Sbjct: 337 GYIEEENVKGILETKRRLEEDGVCIDLVMCNT----IIKALLMVGALE 380
>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
Length = 559
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R K NTI+ +I+ + +++D+A +I +++ G+EP++++YN +I AC + ++
Sbjct: 204 RGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVEPNTVTYNSIIDACARVGEMG 263
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLEIVFEMKSCCNL 125
E++ S G PD+ T++T++ G+ D+ LL +++E ++
Sbjct: 264 SATRLLEEML-------SSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDV 316
Query: 126 ILDRSTFTAMVDALL 140
IL S V + L
Sbjct: 317 ILYNSLLEGCVKSGL 331
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I + +I+ +D+++Q+L + E+G+ PD + YN L+ C+K+ L + Q
Sbjct: 282 ITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQ 341
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+++ P FT L+ + + L + E+ E+ N ++ +T ++
Sbjct: 342 MQEY-------NIPPSNFTLTILIKMYGRSGQLDKVFELADELPKRYNFSINTHVYTCLM 394
Query: 137 DALLYSGSIKVV 148
A + +G +V
Sbjct: 395 SACITNGRYAMV 406
>gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Vitis vinifera]
Length = 993
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 24/181 (13%)
Query: 8 VNREHWKLNTIVMNA-VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK 66
+ RE + + + ++ + RE ++ + E +EKG+ PD++SY ILI +
Sbjct: 149 MEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGY 208
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
++ + F E++K +G K P++ TY +++GF L + F+M +
Sbjct: 209 VEKAIGFLEKMKKDGLK-------PNLVTYTAIMLGFCKKGKLDEAYTL-FKMVENLGIE 260
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFG---EIVKRVCSNPGLWPKPHLYVSMMHEL 183
+D + ++D G I C+FG ++ KR G+ P Y S+++ L
Sbjct: 261 VDEFMYVTLIDGFCTRGDID-------CVFGLLEDMEKR-----GISPSIVTYNSIINGL 308
Query: 184 A 184
Sbjct: 309 C 309
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 31/168 (18%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
E + ++ K N + A++ + ++DEAY + + VE G+E D Y LI
Sbjct: 217 EKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTR 276
Query: 65 KKLDVTMPFNEQLKDNGQK-------------CSSG----------GFHPDIFTYATLLM 101
+D E ++ G C +G G D T++TLL
Sbjct: 277 GDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIAGDAVTFSTLLH 336
Query: 102 GFRHAKDLQSLLEIVFEMKS---CCNLILDRSTFTAMVDALLYSGSIK 146
G+ ++++ +LE ++ C +L++ + ++ ALL G+++
Sbjct: 337 GYIEEENVKGILETKRRLEEDGVCIDLVMCNT----IIKALLMVGALE 380
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 35 EAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
+A Q+ E V KG P+ YN LI K ++ + L D +C PD
Sbjct: 727 DAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNL---LIDLKARC----IKPDE 779
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
FT + L+ G+ H D++ L FE K +++ D F +V L G ++
Sbjct: 780 FTVSALINGYCHKGDMEGALGFFFEFKK-KDILPDFLGFMYLVRGLCAKGRME 831
>gi|357445513|ref|XP_003593034.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482082|gb|AES63285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 361
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ I N V++ R+DE + S+ E G PD++SYN LI+ K + D+ +
Sbjct: 206 LDLITYNIVLDILGRKGRVDEMLDMFASLKETGFVPDTISYNTLINGLRKVGRSDMCFEY 265
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+++K+NG PD+ TY L+ A +++ L+ EMK
Sbjct: 266 FKEMKENGN-------EPDLLTYTALIDISGRAGNIEESLKFFMEMK 305
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N +I R+ R D ++ + + E G EPD L+Y LI + ++ ++ F
Sbjct: 242 DTISYNTLINGLRKVGRSDMCFEYFKEMKENGNEPDLLTYTALIDISGRAGNIEESLKFF 301
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++K G P I Y +L+ ++++ E++ EM S
Sbjct: 302 MEMK-------LKGILPSIQIYRSLIHNLNKTENIELATELLEEMNS 341
>gi|296081018|emb|CBI18522.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 24/181 (13%)
Query: 8 VNREHWKLNTIVMNA-VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK 66
+ RE + + + ++ + RE ++ + E +EKG+ PD++SY ILI +
Sbjct: 149 MEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGY 208
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
++ + F E++K +G K P++ TY +++GF L + F+M +
Sbjct: 209 VEKAIGFLEKMKKDGLK-------PNLVTYTAIMLGFCKKGKLDEAYTL-FKMVENLGIE 260
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFG---EIVKRVCSNPGLWPKPHLYVSMMHEL 183
+D + ++D G I C+FG ++ KR G+ P Y S+++ L
Sbjct: 261 VDEFMYVTLIDGFCTRGDID-------CVFGLLEDMEKR-----GISPSIVTYNSIINGL 308
Query: 184 A 184
Sbjct: 309 C 309
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 31/168 (18%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
E + ++ K N + A++ + ++DEAY + + VE G+E D Y LI
Sbjct: 217 EKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTR 276
Query: 65 KKLDVTMPFNEQLKDNGQK-------------CSSG----------GFHPDIFTYATLLM 101
+D E ++ G C +G G D T++TLL
Sbjct: 277 GDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIAGDAVTFSTLLH 336
Query: 102 GFRHAKDLQSLLEIVFEMKS---CCNLILDRSTFTAMVDALLYSGSIK 146
G+ ++++ +LE ++ C +L++ + ++ ALL G+++
Sbjct: 337 GYIEEENVKGILETKRRLEEDGVCIDLVMCNT----IIKALLMVGALE 380
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 35 EAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
+A Q+ E V KG P+ YN LI K ++ + L D +C PD
Sbjct: 582 DAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNL---LIDLKARC----IKPDE 634
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
FT + L+ G+ H D++ L FE K +++ D F +V L G ++
Sbjct: 635 FTVSALINGYCHKGDMEGALGFFFEFKK-KDILPDFLGFMYLVRGLCAKGRME 686
>gi|118348364|ref|XP_001007657.1| hypothetical protein TTHERM_00059250 [Tetrahymena thermophila]
gi|89289424|gb|EAR87412.1| hypothetical protein TTHERM_00059250 [Tetrahymena thermophila
SB210]
Length = 564
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK 66
+ RE+ K N + +++ + Q + +Q+++ E +EPDS SYN LI C K +
Sbjct: 109 FLKREYNKKNFNFLLSILAEKGDLQNAESVFQLMK--EMNIEPDSYSYNSLIKVCGKQRN 166
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
++ + EQ S F ++F Y +LL+G+ ++ +I EM+ L
Sbjct: 167 MEKAEEYFEQ--------SLQKFGANLFNYNSLLLGYARNQNALECEKITREMEE-KGLK 217
Query: 127 LDRSTFTAMVDALLYSGSIK 146
LD +T +++A S +++
Sbjct: 218 LDAPIYTTLINAHYKSRNLR 237
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ + + + N +I + A ILE + + G +P+SLSYN L+ K KK+D
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 396
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+ + E++ S G +PDI TY T+L ++ +EI+ ++ K C ++
Sbjct: 397 RAIEYLERM-------VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449
Query: 127 LDRSTFTAMVDALLYSG 143
+ T+ ++D L +G
Sbjct: 450 I---TYNTVIDGLAKAG 463
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ + +++D A + LE V +G PD ++YN +++A K K++ +
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL SS G P + TY T++ G A ++++ EM++ +L D T+++
Sbjct: 438 NQL-------SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA-KDLKPDTITYSS 489
Query: 135 MVDALLYSGSI 145
+V L G +
Sbjct: 490 LVGGLSREGKV 500
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + +A ++L+ + K L+PD+++Y+ L+ + K+D + F +
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE-IVFEMKSCCNLILDRSTFTAM 135
+ G P+ T+ ++++G ++ ++ +VF + C + +++T +
Sbjct: 510 FE-------RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCK--PNETSYTIL 560
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172
++ L Y G K AL E++ +C N GL K
Sbjct: 561 IEGLAYEGMAK----EAL----ELLNELC-NKGLMKK 588
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTK 65
+++R + + N ++ + ++ ++ +A ++L+ +++ PD ++Y ILI A +
Sbjct: 194 VLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDS 253
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ M ++++D G C+ PD+ TY L+ G L ++ + +M S
Sbjct: 254 GVGHAMKLLDEMRDRG--CT-----PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I +IEA+ + A ++L+ + ++G PD ++YN+L++ K +LD + F
Sbjct: 238 DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
+ S G P++ T+ +L
Sbjct: 298 NDM-------PSSGCQPNVITHNIIL 316
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 32 RIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ +A +ILE +E G PD ++YN++IS K +++ + +++
Sbjct: 152 KTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS----------VS 201
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIKVV 148
PD+ TY T+L + L+ +E++ M + C D T+T +++A +
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDC---YPDVITYTILIEATCRDSGVG-- 256
Query: 149 GLYALCIFGEIVKRVCS 165
+A+ + E+ R C+
Sbjct: 257 --HAMKLLDEMRDRGCT 271
>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 775
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 70/131 (53%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + +DE++ + E ++ G EPD ++YN LI+ K +++ F
Sbjct: 286 DIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFL 345
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K++G K P++ TY+TL+ LQ ++ + +M+ L + T+T+
Sbjct: 346 HEMKNSGLK-------PNVVTYSTLIDALCKEHMLQQAIKFLLDMRR-VGLSPNEFTYTS 397
Query: 135 MVDALLYSGSI 145
++DA +G +
Sbjct: 398 LIDANCKAGYL 408
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+ GL PD ++YN LI K LD + E++KD G + PD+ TY L+ F
Sbjct: 280 QMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCE-------PDVITYNALINCF 332
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ + + EMK+ L + T++ ++DAL
Sbjct: 333 CKYEQMPKAFHFLHEMKN-SGLKPNVVTYSTLIDAL 367
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+++ ++DEA ++ ++ KG P+ SYNILI+ K+ ++D + K
Sbjct: 189 NALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRID-------EAKG 241
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ S PDIFTY+TL+ GF Q E++ EM S L+ + T++ ++D L
Sbjct: 242 LLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCS-YGLLPNLITYSIVLDGL 300
Query: 140 LYSGSI 145
G +
Sbjct: 301 CKHGHL 306
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 32/233 (13%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
+E+V H + + I + +I + A Q+L+ +E KG +P+ ++YN +I + K
Sbjct: 34 DEMVKMGH-EPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCK 92
Query: 64 TKKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEM 119
+ + M F+E +K+ G PD+FTY+++L GF + SL + + E
Sbjct: 93 DRLVTEAMDFFSEMVKE--------GIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVER 144
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
N+I ++ TFT ++D L I A +F + ++ GL P + Y ++
Sbjct: 145 ----NVIPNKVTFTILIDGLCKKRMIS----EAWLVFETMTEK-----GLEPDVYTYNAL 191
Query: 180 MHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLA 232
+ +R D + + M D G +P V+ + ++L+ G++D A
Sbjct: 192 VDGYCSRSQMDEAQKLFNIM--DRKGC-APNVR--SYNILINGHCKSGRIDEA 239
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 33 IDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPFNEQL------------- 77
I EA ++ ++ + KG +PD+ SYNILI K K++D FNE +
Sbjct: 356 IVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNT 415
Query: 78 --------------KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+D + S G PD+FTY+ LL GF L + M+S
Sbjct: 416 LIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQS-T 474
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
L D + + ++DA+ G++K A +F E+ + GL P +Y ++++ L
Sbjct: 475 YLKPDIAMYNILIDAMCKFGNLKD----ARKLFSELFVQ-----GLLPNVQIYTTIINNL 525
Query: 184 AARVDYDIVKSPYRRMWPDS 203
D +R M D
Sbjct: 526 CKEGLLDEALEAFRNMEGDG 545
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 23/148 (15%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG- 102
E G +P+ ++YNILI + K K ++ + +K + PDIFTY +L+ G
Sbjct: 228 EAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMK-------AKRISPDIFTYNSLIQGL 280
Query: 103 --FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
FR K+ +LL EM S N++ + TF +VDA+ G + + V
Sbjct: 281 CNFRRWKEASALLN---EMTS-LNIMPNIFTFNVLVDAICKEGKVSE---------AQGV 327
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVD 188
+ + G+ P Y S+M+ + R++
Sbjct: 328 FKTMTEMGVEPDVVTYSSLMYGYSLRME 355
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
++ +I+ QR+D A+ + + K GL+PD++++N LI+ K K + F +
Sbjct: 132 TLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF 191
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMG 102
+ + G P ++TY T++ G
Sbjct: 192 E-------ASGCQPTVYTYTTIING 209
>gi|414591615|tpg|DAA42186.1| TPA: hypothetical protein ZEAMMB73_716348 [Zea mays]
Length = 325
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R ++N I+ N +++ EA+R DEA IL + E G PD SY+IL+ + K
Sbjct: 139 RTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKS 198
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ + G CS PD+ Y+T++ GF D+ ++ EM +
Sbjct: 199 GQADDLLRMMAEGGAVCS-----PDVVAYSTVIDGFFKEGDVNKACDLFKEMVQ-RGIPP 252
Query: 128 DRSTFTAMVDAL 139
D T++++V AL
Sbjct: 253 DFVTYSSVVHAL 264
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
+ +++ NT NA++ E ++E + + E VE+GL D +SYN LI C K+
Sbjct: 476 RLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKS 535
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K++ E++ GF PD +TY L+ G + + ++ E K
Sbjct: 536 GKIEEAFKLKEKMMKQ-------GFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAK 584
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ I N +I ++ +I+EA+++ E + K G +PD+ +YN L+ K+D
Sbjct: 520 LDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRV 579
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
+ KD+G P+I+TYA +L G+ +A
Sbjct: 580 LHEAKDHGVV-------PNIYTYALMLEGYCNA 605
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
+L+ +V N +I A +A EA+++ +++ + P +Y+ +I ++
Sbjct: 624 ELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKG 683
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E++++ G P++F Y L+ G+ + + I+ EM S C + ++ T+
Sbjct: 684 IFEEMRNEG-------LMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNC-IQPNKITY 735
Query: 133 TAMVDALLYSGSIK 146
T M+D G+ K
Sbjct: 736 TIMIDGYCKMGNTK 749
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N +V +I+A + +DEA IL ++ +GL PD +Y+ LISA + +L D F
Sbjct: 290 NCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKF 349
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
N+ + G P+ Y +L+ GF DL E+V+EM
Sbjct: 350 NQMI--------GTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEM 387
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 17/192 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R K + N V++ +R D+A ++L E G PD+ SY I++ +
Sbjct: 36 RTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRS 95
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ + CS PD+ TY T++ GF + + EM +
Sbjct: 96 QQALDLLRMMAKEEGVCS-----PDVVTYNTVIHGFFKEGKIGKACNLYHEMMQ-QGFVP 149
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187
D T ++++AL + ++ E++ R + G+ P Y SM+H +
Sbjct: 150 DVVTHNSIINALCKARAVDNA---------ELLLRQMVDNGVPPNKVTYTSMIHGYSTLG 200
Query: 188 DYDIVKSPYRRM 199
++ +R M
Sbjct: 201 RWEEATKMFREM 212
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I+ N +I+ + +A+ +L++ + G+ PD+ +YN L++ K+ ++D + +
Sbjct: 433 IMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFRE 492
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ D K P TY +L G A + +++ EM C
Sbjct: 493 MSDKKIK-------PTTVTYNIILDGLFRAGRTVAAQKMLHEMIGC 531
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI + +I +A + E +++G PD +++N +I+A K + +D
Sbjct: 115 DVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLL 174
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ DN G P+ TY +++ G+ + ++ EM LI D ++ +
Sbjct: 175 RQMVDN-------GVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTG-RGLIPDIVSWNS 226
Query: 135 MVDALLYSGSIK 146
+D+L G K
Sbjct: 227 FMDSLCKHGRSK 238
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + R D+A Q+L+++ ++G++PD +S+N LI+A K+ L + +
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLF 282
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
+ G PD+ TY TL+ + +L+ + VFE D T+ AMV
Sbjct: 283 -----EVRQSGLRPDVITYNTLISACSQSSNLEDAV-TVFEDMIASECRPDLWTYNAMVS 336
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
G + A +F E+V++ G P Y S+++ A + D V+
Sbjct: 337 VHGRCGKAE----EAERLFRELVEK-----GFMPDAITYNSLLYAFAKEGNVDKVE 383
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA++ + +EA ++ E VEKG PD+++YN L+ A K +D EQL
Sbjct: 332 NAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQL-- 389
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF + TY T++ + L + + EM++ D T+T M+D+L
Sbjct: 390 -----VKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRA-MGCTPDAVTYTVMIDSL 443
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
+K + ++NA++ A D Q+ S+ E GLEPD +YN LI ++ + +
Sbjct: 916 FKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGF 975
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
L + G++ G P + +Y +LL A +L+ + +FE + L+RS
Sbjct: 976 TL---LNEMGKR----GLTPKLQSYKSLLAASAKA-ELREQADQIFEEMRSKSYQLNRSI 1027
Query: 132 FTAMVDALLYSGS 144
+ M+ +G+
Sbjct: 1028 YHMMMKIYRNAGN 1040
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N I+ IDEA ++LES V +GL PD +SYN LI K KL +
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS----LLEIVFEMKSCCNLILDRS 130
++ ++ G P+ FTY T++ GF A +Q+ L + +F+ I D
Sbjct: 310 HKMVNS-------GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK-----GFIPDEF 357
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
T++++++ L G + A+ +F E +++
Sbjct: 358 TYSSLINGLCNDGDMN----RAMAVFYEAMEK 385
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ N +I+ + + +D+A +IL++ + G+ PD ++YN L++ K +KLD V F
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
L+ G P+I TY L+ F + + +E+ EMK+ L D T
Sbjct: 520 KAMLEK--------GCTPNIITYNILIESFCKDRKVSEAMELFKEMKT-RGLTPDIVTLC 570
Query: 134 AMVDALLYSGSI 145
++ L +G +
Sbjct: 571 TLICGLCSNGEL 582
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N ++ +A+++D ++ +EKG P+ ++YNILI + K +K+ M
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELF 554
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++K + G PDI T TL+ G +L E+ ++ + F
Sbjct: 555 KEMK-------TRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNI 607
Query: 135 MVDAL 139
M++A
Sbjct: 608 MINAF 612
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVT 70
+K + I+ N +++ + + +A Q+++ + E G PD +YN++++ K L D
Sbjct: 387 FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDAN 446
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
N+ + + G PDIFT+ TL+ G+ +++ +EI+ M S
Sbjct: 447 GILNDAI--------AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS 489
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N I+ IDEA ++LES V +GL PD +SYN LI K KL +
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS----LLEIVFEMKSCCNLILDRS 130
++ ++ G P+ FTY T++ GF A +Q+ L + +F+ I D
Sbjct: 310 HKMVNS-------GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK-----GFIPDEF 357
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
T++++++ L G + A+ +F E +++
Sbjct: 358 TYSSLINGLCNDGDMN----RAMAVFYEAMEK 385
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ N +I+ + + +D+A +IL++ + G+ PD ++YN L++ K +KLD V F
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
L+ G P+I TY L+ F + + +E+ EMK+ L D T
Sbjct: 520 KAMLEK--------GCTPNIITYNILIESFCKDRKVSEAMELFKEMKT-RGLTPDIVTLC 570
Query: 134 AMVDALLYSGSI 145
++ L +G +
Sbjct: 571 TLICGLCSNGEL 582
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N ++ +A+++D ++ +EKG P+ ++YNILI + K +K+ M
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELF 554
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++K + G PDI T TL+ G +L E+ ++ + F
Sbjct: 555 KEMK-------TRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNI 607
Query: 135 MVDAL 139
M++A
Sbjct: 608 MINAF 612
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVT 70
+K + I+ N +++ + + +A Q+++ + E G PD +YN++++ K L D
Sbjct: 387 FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDAN 446
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
N+ + + G PDIFT+ TL+ G+ +++ +EI+ M S
Sbjct: 447 GILNDAI--------AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS 489
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
N +N I+ + ++EA ++L+ V +GL PD ++YN LI K K+
Sbjct: 250 NLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKV-------V 302
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+ + +K + G+ PD FTY +++ G+ +Q+ +I+ + + + D ST+ ++
Sbjct: 303 EAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRD-GAFKGFVPDESTYCSL 361
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
++ L G I A+ +F E +++ GL P
Sbjct: 362 INGLCQDGDID----RAINVFNEAMEK-----GLKP 388
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N+++ +A + ++ + +EKG P+ ++YNIL + K +K++ +
Sbjct: 494 DVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLI 553
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++++ G PD+ + TL+ GF DL ++ + +T+
Sbjct: 554 EEMQNK-------GLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNI 606
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
M++A G + + ++ ++C N G P + Y M+
Sbjct: 607 MINAF--------AGKLNMNMAEKLFNKMCEN-GFSPDSYTYRVMI 643
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 28/193 (14%)
Query: 39 ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98
+++++ KG PD ++N LI K KLD + +++ ++ G PD+ TY +
Sbjct: 448 VIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNH-------GVSPDVITYNS 500
Query: 99 LLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
+L G A +D+ +++ E N+I T+ + ++ + ++ AL +
Sbjct: 501 ILNGLCKAGKYEDVMGTFKLMMEKGCVPNII----TYNILTESFCKARKVE----EALNL 552
Query: 156 FGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPDSTGTISPE 210
E+ N GL P + ++M D D ++R+ + + T +
Sbjct: 553 IEEM-----QNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIM 607
Query: 211 VQEEAGHLLMEAA 223
+ AG L M A
Sbjct: 608 INAFAGKLNMNMA 620
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N ++ N +++ + I +A +++ E E G PD +YN++I+ K+
Sbjct: 387 KPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLC---KIGCVSD 443
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + D K G PD+FT+ TL+ G+ L + +EIV M + + D T+
Sbjct: 444 ADNLVIDAIAK----GHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWN-HGVSPDVITY 498
Query: 133 TAMVDALLYSGSIK-VVGLYAL 153
++++ L +G + V+G + L
Sbjct: 499 NSILNGLCKAGKYEDVMGTFKL 520
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD 68
R + + ++ NA+I + + ID A++I+ +EK + PD ++YN L+ ++D
Sbjct: 390 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 449
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+++ + G PD+ TY TL+ G+ D++ L I EM K +
Sbjct: 450 EARKLIDEM-------TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 502
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
L T+ A++ L +G G A + E+V+ G+ P Y+S++ L
Sbjct: 503 L---TYNALIQGLCKNGQ----GDDAENMVKEMVEN-----GITPDDSTYISLIEGL 547
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKG-LEPDSLSYNILISACIK 63
E+ R N VI + R+DEA ++ E + KG ++P+++ YN LI
Sbjct: 210 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269
Query: 64 TKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFT 95
KLD + + +++ + G ++ G D+FT
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFT 329
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
Y L+ G +++ LEI FE S + T+T+++ AL G ++ +
Sbjct: 330 YNILINGHCKEGNVKKALEI-FENMSRRGVRATVVTYTSLIYALSKKGQVQETD----KL 384
Query: 156 FGEIVKRVCSNPGLWPKPHLYVSMM--HELAARVD--YDIV-KSPYRRMWPD 202
F E V+R G+ P LY +++ H + +D ++I+ + +R+ PD
Sbjct: 385 FDEAVRR-----GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 431
>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
Length = 603
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTK 65
++++ K N + +++ ++ R++EA ++ + + K G+ P +++YN +I+A K K
Sbjct: 398 LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLK 457
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
K+D + +++ ++ P I TY+ ++ G + +++ EM +
Sbjct: 458 KMDEALELLREMQRRKEE-----LEPSIVTYSMIIHGLGKVGMEERAFDLLAEMID-NGV 511
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
I D T+T+++ L +G + A+ + E++K G++P H Y +++ ++
Sbjct: 512 IPDCFTYTSLIQTLAGAGKVS----RAMELLEEMLK-----AGIFPDDHTYGTLV-QILC 561
Query: 186 RVDYD 190
R D D
Sbjct: 562 RSDVD 566
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 19/176 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I+ +I+ ++ I +A +++E +E+ +PD +YN LIS IK +L+ +
Sbjct: 103 DVILCTKLIKGFFNSRNIGKATRVMEILERYGKPDVFAYNALISGFIKANQLENANRVLD 162
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRSTFTA 134
++K S GF PD+ TY ++ F L LEI E +K C + T+T
Sbjct: 163 RMK-------SRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTV--ITYTI 213
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
+++A + G I V A+ + E++ + GL P Y +++ + + D
Sbjct: 214 LIEATILDGGIDV----AMKLLDEMLSK-----GLEPDTLTYNAIIRGMCKEMMVD 260
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + + +I +++EA +L S+ EKGL+PD+ Y+ LI+ + +LD+
Sbjct: 310 KPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATE 369
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
F E + S G PDI Y T++ G LE VFE + S++
Sbjct: 370 FLEYM-------ISDGCLPDIVNYNTIMAGLCRTGKADQALE-VFEKLDEVGCPPNVSSY 421
Query: 133 TAMVDALLYSG 143
+ AL SG
Sbjct: 422 NTLFSALWSSG 432
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
IFEE + +++ + I +IEA+ ID A ++L E + KGLEPD+L+YN +I
Sbjct: 195 IFEE---LLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIR 251
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K +D L SS G PDI TY LL
Sbjct: 252 GMCKEMMVDKAFELLRSL-------SSRGCKPDIITYNILL 285
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 30/127 (23%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
EI+ R + K + NA+I +A +++ A ++L+ ++ +G PD ++YNI+I +
Sbjct: 128 EILER-YGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSR 186
Query: 65 KKLDVTMP-FNEQLKDNGQKCS---------------------------SGGFHPDIFTY 96
KLD+ + F E LKDN + S G PD TY
Sbjct: 187 GKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTY 246
Query: 97 ATLLMGF 103
++ G
Sbjct: 247 NAIIRGM 253
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 39 ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98
IL+ + +G++PD ++YN LIS + +D + E L D SG + P++ +Y
Sbjct: 441 ILKLLNQGIDPDEITYNSLISCLCRDGMVDEAI---ELLVD----MQSGRYRPNVVSYNI 493
Query: 99 LLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSG 143
+L+G +E++ M K C + +T+ +++ + +SG
Sbjct: 494 ILLGLCKVNRANDAIEVLAAMTEKGCQP---NETTYILLIEGIGFSG 537
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +GL+PD ++Y I +K E++K + GF PD+ TY L+
Sbjct: 442 EMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMK-------AEGFPPDLITYNVLI 494
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G + E+V +M+ ++ D T+T+++ A L SG ++ A +F +++
Sbjct: 495 NGLCKLGNFDDANELVQKMR-LEGIVPDHVTYTSIIHAHLISGLLR----KAEEVFSDML 549
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV 211
K+ G+ P Y ++H A R D K + M +SP V
Sbjct: 550 KK-----GIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKG---VSPNV 592
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I+ + +RI EA +I + +E +G+ +S++YN LI K+++++
Sbjct: 475 NVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLM 534
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFT 133
+Q+ G PD FTY +LL F A D++ +IV M S C D T+
Sbjct: 535 DQM-------IMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCE--PDIVTYG 585
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
++ L +G ++ + R G+ PH Y ++ L R
Sbjct: 586 TLIAGLCKAGRVEA---------ATKLLRTIQMKGINLTPHAYNPVIQALFRR 629
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIK 63
N+++ R+ NT+ N +I + +++EA ++ L KG+ PD +YN LI
Sbjct: 360 NQMIERD-CSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL 418
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SC 122
++ V M +++K G C HPD FTY L+ LQ L ++ EM+ S
Sbjct: 419 SRNHTVAMELYKEMKTKG--C-----HPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSG 471
Query: 123 C--NLILDRSTFTAMVDAL 139
C N+I T+ ++D
Sbjct: 472 CARNVI----TYNTLIDGF 486
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 23/172 (13%)
Query: 32 RIDEAYQILE--SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
RI+EA + +E S+ +G PD ++N+L++ KT + + + + G F
Sbjct: 280 RIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREG-------F 332
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIKV 147
PDI+TY +L+ G ++ ++++ +M + C + T+ ++ L ++
Sbjct: 333 DPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSP---NTVTYNTIISTLCKENQVEE 389
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
AL + G+ G+ P Y S++ L ++ + Y+ M
Sbjct: 390 ATKLALVLTGK---------GILPDVCTYNSLIQGLCLSRNHTVAMELYKEM 432
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 35/177 (19%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
N +I+A A +I A ++E +E GL PD ++ ++ I+ LD M EQ+
Sbjct: 197 TFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQM 256
Query: 78 KDNGQK-------------CSSG----------------GFHPDIFTYATLLMGFRHAKD 108
+ G C G GF PD +T+ L+ G
Sbjct: 257 VEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGH 316
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
++ LE V +M D T+ +++ L G + A+ + ++++R CS
Sbjct: 317 VKHALE-VMDMMLREGFDPDIYTYNSLISGLCKLGEVD----EAVKVLNQMIERDCS 368
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 6 EIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISAC 61
E+VNR + + I N ++ +A + +E +I +++E KG P+ ++YNI++ +
Sbjct: 456 EMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSL 515
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K KK++ + ++K S G PD+ ++ TL GF D+ ++ M+
Sbjct: 516 CKAKKVNEAVDLLGEMK-------SKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEK 568
Query: 122 CCNLILDRSTFTAMVDAL 139
++ +T+ +V A
Sbjct: 569 QYDVCHTTATYNIIVSAF 586
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 34 DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
D ++ + +++ KG PD +YN LI K KLD ++ S G PD+
Sbjct: 418 DASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRM-------WSQGMTPDV 470
Query: 94 FTYATLLMGFRHAKDLQSLLEI--VFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
TY TLL G A + ++EI E K C I+ T+ +VD+L + +
Sbjct: 471 ITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNII---TYNIIVDSLCKAKKVN----E 523
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
A+ + GE+ + GL P + ++ D D +RRM
Sbjct: 524 AVDLLGEM-----KSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM 566
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 22 AVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDN 80
A+ A R ++ ++ + + V G EPD L+YN +I C K D N LKD
Sbjct: 266 ALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDA----NRVLKDA 321
Query: 81 GQKCSSGGFHPDIFTYATLLMGF 103
K GF PD FTY +L+ GF
Sbjct: 322 VFK----GFKPDEFTYCSLINGF 340
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 31 QRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
++ID A QI + E L PD+ YNI+++ +K+ ++D + +K+
Sbjct: 682 EKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQ-------NI 734
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
PD+FTY +LL G + L+ + +M + D +T+++D L G +
Sbjct: 735 LPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEP-DVVAYTSLMDVLGKGGKLS--- 790
Query: 150 LYALCIFGEIVKRVC 164
+AL IF + K+ C
Sbjct: 791 -HALIIFRAMAKKRC 804
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 24 IEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQ 82
+ + + R+D A + I E ++ G++P ++ +LI A +K+ +D F +K+
Sbjct: 294 VHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKN--L 351
Query: 83 KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142
+CS P++ TY TL+ G A L+ E+ EMK N D + ++D L +
Sbjct: 352 RCS-----PNVVTYTTLVNGLAKAGRLEEACEVFVEMKE-NNCSPDAIAYNTLIDGLGKA 405
Query: 143 GSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
G + A +F E+ R GL P Y M+ L
Sbjct: 406 GEADM----ACGLFKEMKDR-----GLVPNLRTYNIMISVLG 438
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 23 VIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
VI ++ +D+A + + E+G+EP +Y L+S+ +K +K+D + +L+++
Sbjct: 639 VINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQES- 697
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
PD F Y ++ G + + ++V MK+ N++ D T+T+++D L
Sbjct: 698 ------SLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKN-QNILPDLFTYTSLLDGLGK 750
Query: 142 SGSIK 146
SG ++
Sbjct: 751 SGRLE 755
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+FEE + R N + N ++ +A R++ A ++LE +EK G PD ++YNILI
Sbjct: 865 LFEE---MQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILID 921
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +D + +++K+ G PD+ T+ +L+ L E+ M
Sbjct: 922 GVGKMGMVDEAESYFKRMKEK-------GIVPDVITFTSLIESLGKVDKLLEACELFDSM 974
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169
+ T+ ++D L +G + A IF E+ + C G+
Sbjct: 975 EE-EGYNPSVVTYNVLIDILGRAGKVH----EAAMIFHEMKVKGCMPDGI 1019
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 39/198 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I +A R EA+Q+ + E+G PD +YN LI K ++D +
Sbjct: 426 NLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAII 485
Query: 75 EQLKDNGQKC-----SSGGFHPDI-------------------FTYATLLMGFRHAKDLQ 110
+++ + G +C S+ G I TY TL+ F H +
Sbjct: 486 KEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVD 545
Query: 111 SLLEIVFEMKS--CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168
++++ MK C ++ T+T +VD L +G + A+ + E+ K+ C
Sbjct: 546 EAVKLLEVMKKHECIPTVV---TYTTLVDGLGKAGRLD----EAVSLLREMEKQGCE--- 595
Query: 169 LWPKPHLYVSMMHELAAR 186
P Y S+M R
Sbjct: 596 --PSVVTYSSLMASFYKR 611
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 29/133 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + ++ +A R++EA ++ +E E PD+++YN LI K + D+
Sbjct: 356 NVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLF 415
Query: 75 EQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRHA 106
+++KD G G PD+FTY TL+
Sbjct: 416 KEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKG 475
Query: 107 KDLQSLLEIVFEM 119
+ +L I+ EM
Sbjct: 476 GQMDKVLAIIKEM 488
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPF 73
L I N ++ A +DEA ++LE ++K P ++Y L+ K +LD +
Sbjct: 526 LGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSL 585
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRST 131
+++ G C P + TY++L+ F + L + EM K C + D ST
Sbjct: 586 LREMEKQG--C-----EPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGC---VADVST 635
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEI 159
++ +++ L S + AL +FG +
Sbjct: 636 YSLVINCLCKSDDVD----QALDVFGRM 659
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTK 65
++++ K N + +++ ++ R++EA ++ + + K G+ P +++YN +I+A K K
Sbjct: 341 LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLK 400
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
K+D + +++ ++ P I TY+ ++ G + +++ EM +
Sbjct: 401 KMDEALELLREMQRRKEE-----LEPSIVTYSMIIHGLGKVGMEERAFDLLAEMID-NGV 454
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
I D T+T+++ L +G + A+ + E++K G++P H Y +++ ++
Sbjct: 455 IPDCFTYTSLIQTLAGAGKVS----RAMELLEEMLK-----AGIFPDDHTYGTLV-QILC 504
Query: 186 RVDYD 190
R D D
Sbjct: 505 RSDVD 509
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K N + A+I+++ + + EA + + ++K GLEPD ++Y +++++ K+ +LD +
Sbjct: 351 KANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALE 410
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRS 130
+ E CS G + Y++L+ G + + I +EM K C D
Sbjct: 411 YMEF-------CSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPP---DSY 460
Query: 131 TFTAMVDALLYSGSI 145
+ A++DAL G I
Sbjct: 461 CYNALIDALAKCGKI 475
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 23/152 (15%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
E E + + +N + +++I+ ++ R+DEA +I E V+KG PDS YN LI A
Sbjct: 409 LEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDA 468
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSLLEIVFEM 119
K K+D + +++++ +G C ++TY L+ G FR ++ ++L
Sbjct: 469 LAKCGKIDEALALSKRMEVDG--CDQ-----TVYTYTILITGLFREHRNEEAL------- 514
Query: 120 KSCCNLILDR------STFTAMVDALLYSGSI 145
+ +L++D+ + F A+ L SG +
Sbjct: 515 -TLWDLMIDKGITPTAAAFRALSTGLCLSGKV 545
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G+EP SYN L++ + +K F E + + +G PD+ TY T++ G+
Sbjct: 207 ENGIEPSLFSYNFLVNGLVNSK-------FIESAERVFEVMENGKIGPDVVTYNTMIKGY 259
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI-KVVGLY 151
+ E + M+ N+ D+ T+ ++ A G +GLY
Sbjct: 260 CEVGKTRKAFEKLKAME-LRNVAPDKITYMTLIQACYAEGDFDSCLGLY 307
>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
Length = 719
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 112/293 (38%), Gaps = 74/293 (25%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
NE+ N+ + T+ N +I + DEA+++ + + E G++ D+++YN LI K
Sbjct: 392 NEMCNK-GYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCK 450
Query: 64 TKKLDVTMP-FNEQLKDNGQ------------KC---------------SSGGFHPDIFT 95
K+D M NE + + Q C SS G HP+ +T
Sbjct: 451 EGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYT 510
Query: 96 YATLLMGFRHAKDLQSLLEIVFE--------MKSCCNLILDR-----------STFTAM- 135
Y T+L G + D + + E+ E + CN I+ F M
Sbjct: 511 YDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMS 570
Query: 136 -----VDALLYSGSIKVVGLYALCIFGEIVKRV-----CSNPGLWPKPHLYVSMMHELAA 185
DA+ Y+ I+ C G++ K + GL P Y S++ +L
Sbjct: 571 ETGIKADAITYNSLIR-----GFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQ 625
Query: 186 RVDYDIVKSPYRRMWPDSTGTISPEVQEEAG--HLLMEAALNDGQVDLALDKL 236
D + K R+W D +S ++ A L+ G+ +D+L
Sbjct: 626 NGDAESAK----RLWGD---MVSKGIEPHANLREHLISGLCKQGRATEGMDRL 671
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 24/197 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
NT + +I+A ++ ++ Y++L K GL+P + +YN LI+ C ++
Sbjct: 227 NTETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVL 286
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ + N P I+TY ++ G ++ + ++K DR +T
Sbjct: 287 HTMIARN--------HLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDR-GYAPDRVMYT 337
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKR--VCSNPGLWPKPHLYVSMMHELAARVDYDI 191
M+ L GS FGE K + G+ P + Y +M+H D++
Sbjct: 338 TMIHGLCEMGS-----------FGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFER 386
Query: 192 VKSPYRRMWPDSTGTIS 208
Y M GT +
Sbjct: 387 ACELYNEMCNKGYGTTT 403
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 88/218 (40%), Gaps = 41/218 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N+++ +ID+ +I V KGL+PD SY+I I+ K +K+D M
Sbjct: 144 DVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELF 203
Query: 75 EQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRHA 106
+++ G +K + G PDI Y+TLL GF
Sbjct: 204 DEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQ 263
Query: 107 KDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+L +L + EM+ L+ D +T +++ + S +K E++ R+
Sbjct: 264 GNLDEMLVLFQEMQR--RLVKPDLVVYTIIINGMCRSRKVKDA--------KEVLSRLIV 313
Query: 166 NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203
GL P H Y +++ L +R+M D
Sbjct: 314 E-GLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDG 350
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N ++ A RID+AY + E + KG+ P ++YN ++ +TK+
Sbjct: 485 VTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLN 544
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCN--LILDRSTFT 133
+ ++G KC DI+TY +L G + + ++ F+M +S C+ L L+ TFT
Sbjct: 545 MINSGTKC-------DIYTYNIILNGLCKS----NCVDEAFKMFQSLCSKGLQLNIITFT 593
Query: 134 AMVDALLYSG 143
M+ ALL G
Sbjct: 594 IMIGALLKGG 603
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 22/189 (11%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILIS 59
F ++ + W++N IV+N +++ + +R+ EA +L E G PD++SY+IL+
Sbjct: 118 FATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLK 177
Query: 60 A-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
C + + + D+G+ C P++ TY T++ G A+ L E VF+
Sbjct: 178 GFCNENRAEEALELLRMMANDHGRSCP-----PNVVTYTTVIDGLCKAQ-LFDRAEGVFQ 231
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV--CSNPGLWPKPHLY 176
+ + T+ ++ L G K E+V+ + S GL P + Y
Sbjct: 232 QMIDNGVKPNNDTYNCLIHGYLSIGKWK-----------EVVQMLEKMSARGLKPDCYTY 280
Query: 177 VSMMHELAA 185
S+++ L A
Sbjct: 281 GSLLNYLCA 289
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + VI+ +AQ D A + + ++ G++P++ +YN LI + K +
Sbjct: 206 NVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQML 265
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
E++ S+ G PD +TY +LL ++ S L+++ E
Sbjct: 266 EKM-------SARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVE 302
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 22/176 (12%)
Query: 16 NTIVMNAVIEASREAQRID---EAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
N ++ +I +ID E+YQ + S KGL+PD + YN L++ K L
Sbjct: 344 NDVIFTTLIHGHSRNGQIDLMKESYQKMLS--KGLQPDIVLYNTLVNGFCKNGDLVAARN 401
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + G + PD TY TL+ GF D+ + LEI EM + LDR F
Sbjct: 402 IVDGMIRRGLR-------PDKVTYTTLIDGFCRGGDVDTALEIRKEMDQ-NGIELDRVGF 453
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+A++ + G + I E R G+ P Y MM + D
Sbjct: 454 SALICGMCKEGRV---------IDAERALREMLRAGMKPDDVTYTMMMDAFCKKGD 500
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
+ LN V N ++ + I +A ++ + + K L P +S+N LI+ K LDV
Sbjct: 236 FPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGF 295
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC--NLILDR 129
+LK + +K + PD+FTY+ L+ + + +EM C LI +
Sbjct: 296 ----RLKHHMEKSRT---RPDVFTYSALINALCKENKMDGAHRLFYEM---CERGLIPND 345
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY 189
FT ++ +G I ++ E +++ S GL P LY ++++ D
Sbjct: 346 VIFTTLIHGHSRNGQIDLM--------KESYQKMLSK-GLQPDIVLYNTLVNGFCKNGDL 396
Query: 190 ----DIVKSPYRR-MWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+IV RR + PD + L++ G VD AL+
Sbjct: 397 VAARNIVDGMIRRGLRPDKVTYTT----------LIDGFCRGGDVDTALE 436
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + NA+I + + + EA ++L+ + ++GL P+ +++N LI A K ++D
Sbjct: 366 KPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFL 425
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ D G P++ TY L++GF +++ ++ EM+ L D T+
Sbjct: 426 LRSMMLDT-------GVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEG-NGLKADLVTY 477
Query: 133 TAMVDALLYSGSI-KVVGLY-------------ALCIFGEIVKRVCSNPGLWPKPHLYVS 178
+VDAL G K V L + + ++K C+ L L
Sbjct: 478 NILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNE 537
Query: 179 MMHE--LAARVDYDIVK 193
M+ + + R YDI++
Sbjct: 538 MLEKGLIPNRTTYDILR 554
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I+ + + A ++ E +++ GL+P+ ++YN LI+ KLD +
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ S G P++ TY L+ GF + K+ + +L+ + + N+I T
Sbjct: 358 DKM-------SGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVI----T 406
Query: 132 FTAMVDALLYSGSI 145
F ++DA +G +
Sbjct: 407 FNTLIDAYGKAGRM 420
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 25/237 (10%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK 66
+VN+ H K + ++ +I ++ ID+A Q++ +E PD ++YN +I+ + +
Sbjct: 83 LVNKGH-KPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANR 141
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNL 125
+D +++K+ GF PDI TY L+ L S LE + +K C
Sbjct: 142 IDSAYQVLDRMKNK-------GFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKP 194
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
+ T+T +++A L G I A+ + E+++ L P Y S++ +
Sbjct: 195 TV--VTYTILIEATLLQGGID----EAMKLLDEMLE-----INLQPDMFTYNSIIRGM-C 242
Query: 186 RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
R Y V ++ + S+ +P+V ++L+ LN G+ + + +S+ + R
Sbjct: 243 REGY--VDRAFQIISSISSKGYAPDVITY--NILLRGLLNQGKWEAGYELMSDMVAR 295
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 39 ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98
ILE ++KG++PD ++YN LIS + +D + ++ +C P + +Y
Sbjct: 429 ILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECK-----PSVVSYNI 483
Query: 99 LLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSI 145
+L+G + +E++ M K C + +T+T +++ + + G +
Sbjct: 484 VLLGLCKVSRVSDAIEVLAAMVDKGC---RPNETTYTFLIEGIGFGGCL 529
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I + +++E +L+ ++K GL+PD Y+ LI+A K ++D+ +
Sbjct: 300 NVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVL 359
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + S G PDI Y T+L K L I FE + S++ +
Sbjct: 360 DVM-------ISDGCVPDIVNYNTILACLCKQKRADEALSI-FEKLGEVGCSPNASSYNS 411
Query: 135 MVDALLYSG-SIKVVGL 150
M AL +G ++ +G+
Sbjct: 412 MFSALWSTGHKVRALGM 428
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T N V+ E+ + +EA +ILE +EK PD ++YN L+ K K+D
Sbjct: 231 DTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLL 290
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + G++C+ P + TY TL+ GF A L ++ +M + D T+
Sbjct: 291 EDMV--GRRCA-----PTVITYTTLIGGFSRADRLADAYRVMEDMFK-AGISPDLVTYNC 342
Query: 135 MVDALLYSGSIK 146
++D L +G ++
Sbjct: 343 LLDGLCKAGKLE 354
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 29 EAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+ QRIDEAYQ+L E ++K PD+ YN LI+ K K+D + + + + C
Sbjct: 104 QCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLE--RSCV-- 159
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
PD+ TY +L++G L +++ +MK L D + A+++ L ++
Sbjct: 160 ---PDVITYTSLIVGCCQTNALDEARKLMEKMKE-SGLTPDTVAYNALLNGLCKQNQLEE 215
Query: 148 V 148
V
Sbjct: 216 V 216
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I +I A R+ +AY+++E + K G+ PD ++YN L+ K KL+ E
Sbjct: 303 ITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEV 362
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMG---FRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ + + C+ PD+ TY+ L+ G D + LLE++ E NL+ TF
Sbjct: 363 MVE--KDCA-----PDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLV----TFN 411
Query: 134 AMVDALLYSGSI 145
M+D +G +
Sbjct: 412 TMIDGFCKAGKV 423
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 36/158 (22%)
Query: 18 IVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N +++ +A +++EA+++LE VEK PD ++Y+IL++ K K+D E
Sbjct: 338 VTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEM 397
Query: 77 LKDNGQK-------------CSSGGFH---------------PDIFTYATLLMGFRHAKD 108
+ + G + C +G PD+ TY+TL+ G+ A
Sbjct: 398 MLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANR 457
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+Q I+ + D++++++M++ L +G ++
Sbjct: 458 MQDAFAIL-------GISPDKASYSSMLEGLCSTGKVE 488
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 29 EAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+ +R DEA ++L+ + E+G EP+ +Y+ILI+ KTK+++ + + + +
Sbjct: 518 DVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEK------- 570
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRSTFTAMVDALLYSGSIK 146
G PD+ TY +L+ GF + + + M+ S C D+ + ++ SG+++
Sbjct: 571 GCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCE--PDKLAYNILISGFCQSGNVE 628
Query: 147 VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
A+ + ++++ C+ P Y S+M L
Sbjct: 629 ----KAIEVMQLMLEKGCN-----PDAATYFSLMRSL 656
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I ++I + +DEA +++E + E GL PD+++YN L++ K +L+
Sbjct: 161 DVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLL 220
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
E++ + G++ PD F+Y T++
Sbjct: 221 EEMVEAGRE-------PDTFSYNTVV 239
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI A +DEA ++ +S+ KG P ++NILI A K K+D
Sbjct: 219 SAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLL 278
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ D+G PD+ TY+TL+ G D + LLE + + + C ++ ++T
Sbjct: 279 KRMTDDGHV-------PDVVTYSTLISGLCSIARVDDARHLLEDMVK-RQCKPTVVTQNT 330
Query: 132 FTAMVDALLYSGSIK 146
++ L +G IK
Sbjct: 331 ---LIHGLCKAGRIK 342
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N ++ A + + A ++L + V +GL P+ ++Y L+S K +L
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K S G P++FTY L++GF A + L++ EM C + D +
Sbjct: 419 AQMK-------SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM-VCAGISPDHVVYGT 470
Query: 135 MVDALLYSG 143
+ L SG
Sbjct: 471 LAAELCKSG 479
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + +ID+A Q+ +E + + PDS SY ILI K KL+ ++ D
Sbjct: 154 NTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLD 213
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDA 138
+ G P TY ++ G A L LE+ M+S C R TF ++DA
Sbjct: 214 S-------GITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCR--PSRFTFNILIDA 264
Query: 139 LLYSGSI 145
G +
Sbjct: 265 HCKRGKM 271
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + +I R+D+A +LE V++ +P ++ N LI K ++
Sbjct: 289 DVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + +GQ PD+ TY TL+ G A + E++ +M + L + T+TA
Sbjct: 349 DAMVSSGQS-------PDVVTYNTLVHGHCRAGQTERARELLSDMVA-RGLAPNVVTYTA 400
Query: 135 MVDALLYSGSI-KVVGLYA 152
+V L + + + G++A
Sbjct: 401 LVSGLCKANRLPEACGVFA 419
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R ++N I+ N +++ EA+R DEA IL + E G PD SY+IL+ + K
Sbjct: 139 RTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKS 198
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ + G CS PD+ Y+T++ GF D+ ++ EM +
Sbjct: 199 GQADDLLRMMAEGGAVCS-----PDVVAYSTVIDGFFKEGDVNKACDLFKEMVQ-RGIPP 252
Query: 128 DRSTFTAMVDAL 139
D T++++V AL
Sbjct: 253 DFVTYSSVVHAL 264
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+A +D+A I E + G++PD ++Y +I+A + K+D M Q+ D
Sbjct: 398 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMID 457
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PD + Y L+ GF L E++ E+ + + LD F+++++ L
Sbjct: 458 Q-------GVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN-NGMHLDIVFFSSIINNL 509
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G + + A IF V N GL P +Y +M
Sbjct: 510 CKLGRV----MDAQNIFDLTV-----NVGLHPTAVVYSMLM 541
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + R D+A Q+L+++ ++G++PD +S+N LI+A K+ L + +
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLF 282
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
+ G PD+ TY TL+ + +L+ + VFE D T+ AMV
Sbjct: 283 -----EVRQSGLRPDVITYNTLISACSQSSNLEDAV-TVFEDMIASECRPDLWTYNAMVS 336
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
G + A +F E+V++ G P Y S+++ A + D V+
Sbjct: 337 VHGRCGKAE----EAERLFRELVEK-----GFMPDAITYNSLLYAFAKEGNVDKVE 383
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA++ + +EA ++ E VEKG PD+++YN L+ A K +D EQL
Sbjct: 332 NAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQL-- 389
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF + TY T++ + L + + EM++ D T+T M+D+L
Sbjct: 390 -----VKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRA-MGCTPDAVTYTVMIDSL 443
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
+K + ++NA++ A D Q+ S+ E GLEPD +YN LI ++ + +
Sbjct: 916 FKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGF 975
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
L + G++ G P + +Y +LL A +L+ + +FE + L+RS
Sbjct: 976 TL---LNEMGKR----GLTPKLQSYKSLLAASAKA-ELREQADQIFEEMRSKSYQLNRSI 1027
Query: 132 FTAMVDALLYSGS 144
+ M+ +G+
Sbjct: 1028 YHMMMKIYRNAGN 1040
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A + E ++KGL P+ +++ LI+ K +++D+ M +
Sbjct: 210 SVLINGLCKESK----MDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ +++ EM S L D+ T+T +
Sbjct: 266 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM-SMKGLKPDKITYTTL 317
Query: 136 VDALLYSGSIKV 147
+D G ++
Sbjct: 318 IDGCCKEGDLET 329
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I + +R+D A +I + + + L PD ++YN LI K L
Sbjct: 240 NGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL------- 292
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD TY TL+ G DL++ E M N+ LD +TA
Sbjct: 293 KQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQ-ENIRLDDVAYTA 351
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E V R + GL P Y +++E + D
Sbjct: 352 LISGLCQEGRY---------LDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGD 396
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + NA+I + + + EA ++L+ + ++GL P+ +++N LI A K ++D
Sbjct: 366 KPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFL 425
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ D G P++ TY L++GF +++ ++ EM+ L D T+
Sbjct: 426 LRSMMLDT-------GVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEG-NGLKADLVTY 477
Query: 133 TAMVDALLYSGSIK 146
+VDAL G +
Sbjct: 478 NILVDALCKKGETR 491
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I+ + + A ++ E +++ GL+P+ ++YN LI+ KLD +
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ S G P++ TY L+ GF + K+ + +L+ + + N+I T
Sbjct: 358 DKM-------SGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVI----T 406
Query: 132 FTAMVDALLYSGSI 145
F ++DA +G +
Sbjct: 407 FNTLIDAYGKAGRM 420
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + N +++A + +A ++L E E GL P L+YN LI + +
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALN 530
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ G++ +I TY L+ GF + L+ ++ EM LI +R+T+
Sbjct: 531 VRTLMEKKGRRA-------NIVTYNVLIKGFCNKGKLEEANRLLNEMLE-KGLIPNRTTY 582
Query: 133 TAMVDALLYSGSI 145
+ D ++ G I
Sbjct: 583 DILRDEMMEKGFI 595
>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Vitis vinifera]
Length = 566
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 27/154 (17%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NAV+ A +A + EA +++++E KG+ PDS++YN LI + +K++ +++
Sbjct: 327 VYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEM 386
Query: 78 KDNG-------------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSL 112
G +K G HPD TY L+ F + L ++
Sbjct: 387 LQRGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNV 446
Query: 113 LEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
++ EM S + DRS++ ++ L +G ++
Sbjct: 447 FKLWSEM-SENGVGPDRSSYIVLIHGLFLNGKLE 479
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 89/229 (38%), Gaps = 30/229 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I + R+D A +I + + KGL+ D + YN LI K F
Sbjct: 336 NDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGY------FR 389
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E K G+ + G PD FTY TLL G DL+ LE+ EM + LD FTA
Sbjct: 390 EARKFVGEM-TKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVK-EGIQLDNVAFTA 447
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L G I + E R GL P Y +M + D +
Sbjct: 448 IISGLCRDGKI---------VDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFK 498
Query: 195 PYRRMWPDS--TGTISPEVQEEAGHLLMEAALNDGQV---DLALDKLSN 238
+ M D G I+ V LM GQV D+ L+ + N
Sbjct: 499 LLKEMQSDGHIPGVITYNV-------LMNGLCKQGQVKNADMLLNAMLN 540
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N ++ + ++ +A I + + K GL+P ++S+N LI+ K+ L+
Sbjct: 231 NVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLK 290
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN--LILDRSTF 132
+++ PD+FTY+ L+ G L+ + EM C+ L+ + TF
Sbjct: 291 MVMEEF-------RVFPDVFTYSALIDGLCKECQLEDANHLFKEM---CDRGLVPNDVTF 340
Query: 133 TAMVDALLYSGSI 145
T +++ +G +
Sbjct: 341 TTLINGQCKNGRV 353
>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera]
gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A + +D+A + +S+ + PD SY ++SA + ++ F +LK
Sbjct: 354 NILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 413
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+G F P++ TY TL+ G+ +L+ ++E EM+ + +++ +TAM+DA
Sbjct: 414 DG-------FEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQ-VHGIKANQAIYTAMMDA 464
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NT+ N +I + A ++EA + + + E G EPD ++Y LI K LD+ M
Sbjct: 381 KPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAM- 439
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NLILDR 129
D Q+ + G PD FTY+ ++ A L + + EM + C NL+
Sbjct: 440 ------DMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLV--- 490
Query: 130 STFTAMV 136
TF M+
Sbjct: 491 -TFNIMI 496
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A + A+++ E V +G P+ +++NI+I+ K + + +
Sbjct: 453 DTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLY 512
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ GF PD TY+ ++ H L+ + EM+ N + D +
Sbjct: 513 RDMQN-------AGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQR-KNWVPDEPVYGL 564
Query: 135 MVDALLYSGSIK 146
+VD +G+++
Sbjct: 565 LVDLWGKAGNVE 576
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ N++I+ +A+R+ EA Q + +E P+ ++Y+ILI K +++ E +
Sbjct: 350 VTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDM 409
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
K +G + P + TY L+ GF +L+S L + FE + F ++D
Sbjct: 410 KAHG-------YTPTVVTYGGLINGFCKCGELKSAL-LFFEKMKLAGCAPNTVIFNTLID 461
Query: 138 AL 139
L
Sbjct: 462 GL 463
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I +A +++A ++ +EK G + ++YN LI + K + T
Sbjct: 277 NAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAV-- 334
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC--NLILDRSTF 132
D K G P I TY +L+ GF A+ L ++ EM+ C N+I T+
Sbjct: 335 ----DLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVI----TY 386
Query: 133 TAMVDAL 139
+ ++D L
Sbjct: 387 SILIDGL 393
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA++ A++ D+A ++ + V GL P++ +YN+LI K ++ + +K
Sbjct: 1 NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMK- 59
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
S G P+ T TLL+G + S L++ EM++
Sbjct: 60 ------SSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQA 95
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT++ N +I+ +A+R ++ ++L + +G +PD ++YN LIS +++ +
Sbjct: 452 NTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVE-----D 506
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
Q +G C+ P++ T+ L+ G K ++ I+
Sbjct: 507 AQRLFDGMACA-----PNVTTFNFLIRGLCAQKKVEEARNIL 543
>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
Length = 584
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 95/215 (44%), Gaps = 35/215 (16%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68
R++ L+ + AV+ +R+D+A + + G+ D+ +YN+L+ ++++ +
Sbjct: 370 RDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSERPE 429
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
E+L D+ G ++ TY T++ G L+S + + +EM+ + D
Sbjct: 430 EAFRILEELGDD------PGCVANLLTYNTVIAGC----CLESGMVLFYEMRQ-RGIAPD 478
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALC-------------IFGEIVKRVCSNPGLWPKPHL 175
+T++A++D LL SG I + LC + G +V R+C W +
Sbjct: 479 FATYSALIDRLLGSGEIGRA--FDLCEEMLASGLSPPSGVLGRVVARLC-----WSRRGD 531
Query: 176 YVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210
+ + E+A VD + + W D G E
Sbjct: 532 LAAKVIEMAMAVDD---TASFSLPWDDEDGAAQDE 563
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
N ++I+A ++ R+ +A + LE + + G+ PD +++ ++I K + ++ F
Sbjct: 94 NQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVTFTVMIRGFCKNRMMERAWEIF 153
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E +K N +C PD F Y L+ G+ + LE++ EM+ + D +
Sbjct: 154 QEMIKSN--RC-----QPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYN 206
Query: 134 AMVDALLYS 142
++VD L S
Sbjct: 207 SIVDGLCRS 215
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 45/239 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N V N +I ++ + EA +L +E L PD +Y ILI+ CI+ + + F
Sbjct: 338 NLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLF 397
Query: 74 N---------------------------EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
EQ D + ++ G P+I T++TL+ G+ +
Sbjct: 398 QKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNV 457
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
+D+++ + + FEM + ++ D T+TA++DA ++K AL ++ ++++
Sbjct: 458 RDIKAAMGLYFEM-TIKGIVPDVVTYTALIDAHFKEANMK----EALRLYSDMLE----- 507
Query: 167 PGLWPKPHLYVSMMH------ELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLL 219
G+ P H + ++ L+ +D+ + R W T E + G++L
Sbjct: 508 AGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYIL 566
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 37/201 (18%)
Query: 1 IFEENEIVNRE-----HWKLNTIVMNAVIEASR-EAQRIDEAYQILESVEKGLEPDSLSY 54
+FEE V+RE K ++N ++ R ++ +D YQ++ + +GL PD Y
Sbjct: 147 LFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVD--YQLM--ISRGLVPDVHIY 202
Query: 55 NILISACIK----TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
+L C K +KK E+L D + +S G P+++ Y ++ ++
Sbjct: 203 FVLFQCCFKQGLYSKK--------EKLLD---EMTSLGIKPNVYIYTIYILDLCRDNKME 251
Query: 111 SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK-VVGLYA----------LCIFGEI 159
E +FE+ ++ + T++AM+D +G+++ GLY + +FG +
Sbjct: 252 E-AEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTL 310
Query: 160 VKRVCSNPGLWPKPHLYVSMM 180
V C L L+V M+
Sbjct: 311 VDGFCKARELVTARSLFVHMV 331
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N +++ + +IDEAY +L E GL+P+++ +N LISA K ++ +
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ G K PD++T+ +L+ G +++ L ++ +M S ++ + T+
Sbjct: 481 IFREMPRKGCK-------PDVYTFNSLISGLCEVDEIKHALWLLRDMIS-EGVVANTVTY 532
Query: 133 TAMVDALLYSGSIK 146
+++A L G IK
Sbjct: 533 NTLINAFLRRGEIK 546
>gi|343427006|emb|CBQ70534.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1388
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LN +I++ + +D A + + +++E+G+ P S +N++I ++ +D +
Sbjct: 650 LNGKAYGLLIKSCNRSDDVDLAEFYLTQALERGITPRSSDFNLIIDMHVRKTNIDAALAV 709
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+Q+KD G PD +TY L+ GF +D S + M + DR T+
Sbjct: 710 FDQMKD-------FGLQPDTYTYTILIHGFALRRDPDSAAHALRAMIAAGK-SPDRITYA 761
Query: 134 AMVDALLYSG 143
A+++ + SG
Sbjct: 762 ALLNCFVESG 771
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 40/196 (20%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I A A RI EA E ++ G+ PD L+ NIL+S K ++ +
Sbjct: 168 DIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEIL 227
Query: 75 EQLKDNG-------------QKCSSGGF------------HPDIFTYATLLMGFRHAKDL 109
+ +K G C +G PD+ T+ TLL GF A L
Sbjct: 228 DGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGML 287
Query: 110 QSLLEIVFEMKSCC--NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167
LE++ EM C N++ D T+T +V+ L G ++V A + EIV++
Sbjct: 288 PRALEVLEEM---CRENILPDVITYTILVNGLCRVGQVQV----AFYLLEEIVRQ----- 335
Query: 168 GLWPKPHLYVSMMHEL 183
G P Y S++ L
Sbjct: 336 GYIPDVIAYTSLVDGL 351
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLE--PDSLSYNILISACIKTKKLDVT 70
K + N VI ++ +++A ++LE + KG + PD ++YN LI+A + ++
Sbjct: 129 KPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREA 188
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
F E++K + G +PD+ T L+ G D++ LEI+ MK + D
Sbjct: 189 CAFREKMK-------AAGINPDVLTCNILVSGICKDGDVEEALEILDGMK-LAGPVPDVI 240
Query: 131 TFTAMVDALLYSGSI 145
T+ +++ AL +G +
Sbjct: 241 TYNSIIHALCVAGKV 255
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I + +A + A + L ++++ + PD +N+LI K D +
Sbjct: 61 NLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLF 120
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-----KSCCNLILDR 129
E ++ + K P+I TY T++ G + +L+ E++ EM KS +++
Sbjct: 121 ENMESSRVK-------PEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIV--- 170
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167
T+ +++A + I+ C F E +K NP
Sbjct: 171 -TYNTLINAFYRASRIR-----EACAFREKMKAAGINP 202
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N ++ +++I+ +A R+ EA ++ E V+KG PDS YN LI A K K D + F
Sbjct: 375 VNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAF 434
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSL 112
++++D G C ++TY ++ G FR K+ ++L
Sbjct: 435 FKRMEDEG--CDQ-----TVYTYTIMINGLFREHKNEEAL 467
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K+N + A+I+++ + + EA + E ++K GLEPD ++Y ++++ K+ +LD M
Sbjct: 304 KVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAME 363
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRS 130
+ E C G + Y++L+ G A + ++ EM K C D
Sbjct: 364 YLEF-------CRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPP---DSY 413
Query: 131 TFTAMVDALLYSG 143
+ A++DAL G
Sbjct: 414 CYNALIDALAKCG 426
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 18/163 (11%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N N++I++ ++E + + E G+EP +YN L++ + + F
Sbjct: 130 MNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNS-------VF 182
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E + + +G PD+ TY T++ G+ Q E +M+ N+ D+ T+
Sbjct: 183 IESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDME-LRNVAPDKITYM 241
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
++ A G + L ++ E+ GL PH Y
Sbjct: 242 TLIQACYAEGDFDL----CLSLYHEM-----DENGLEIPPHAY 275
>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
Length = 833
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 35/226 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI ++D+AY + L+ +++G+ PD ++YN +I K + +D
Sbjct: 303 DVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVF 362
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ D G K S+G TY L+ G+ + ++ ++ EM S +L D +
Sbjct: 363 QQMLDKGVKPSNG-------TYNCLIHGYLSTGKWKEVVRLLEEM-STHDLEPDCFIYAL 414
Query: 135 MVDALLYSG----------SIKVVGLY-------ALCIFGEIVKRVCSNPGLWPKPHLYV 177
++D L +G S+ G+ A+CIF ++ ++ GL P Y
Sbjct: 415 LLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQ-----GLSPNVVNYG 469
Query: 178 SMMHELA--ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLME 221
+++ L RVD I+K + +M + G + E E+A L+ E
Sbjct: 470 ALIDALCKLGRVDDAILK--FNQMINEVYGLCTVEKWEKAEELVFE 513
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISA-CIK 63
++ + W++N IV N +++ +A+R+DEA IL E G P+ +SYN L+ C +
Sbjct: 220 LILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNE 279
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ + + D G C PD+ +Y T++ GF + + +M
Sbjct: 280 NRAEEALELLHVMADDQGLSCP-----PDVVSYNTVINGFFREGQVDKAYNLFLQM---- 330
Query: 124 NLILDRS------TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+DR T+ ++D L + + A +F +++ + G+ P Y
Sbjct: 331 ---IDRGIPPDVVTYNTVIDGLCKAQVVD----RAKAVFQQMLDK-----GVKPSNGTYN 378
Query: 178 SMMH 181
++H
Sbjct: 379 CLIH 382
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
E++ R + + I N +++ R DEA ++L+ V GL+P+ +YN L+ K
Sbjct: 547 ELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKA 606
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG------FRHAKDL 109
+++D ++ NG PD+ TY T+L G F AK+L
Sbjct: 607 RRIDDAYSLLREMLMNGPT-------PDVVTYNTILHGLFQTGRFSEAKEL 650
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 14 KLNTIVMNAVI-EASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
+L+ +V N ++ + RE R+ EA +++E + + G+ PD +SYN L+ T + D
Sbjct: 520 RLDVVVFNTLMCDLCREG-RVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAA 578
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + S G P+ FTY TLL G+ A+ + ++ EM
Sbjct: 579 KLLDVM-------VSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREM 619
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
N I +R W + T N ++ + +DEA+++ +S+ KGL+ +++NI+I A +K
Sbjct: 653 NMINSRTQWDMYT--YNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLK 710
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K E D S+ G PD+ TY + L+ L ++F
Sbjct: 711 GGK-------KEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEE-LGVLFSAMEEN 762
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLY 151
+ A+V L+ G I G Y
Sbjct: 763 GTAPNSRMLNALVRRFLHRGDISRAGAY 790
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 14/143 (9%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ +++R++ A+ +L+++ PD+++YNIL + K+ + + LK+
Sbjct: 177 FNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMAL---RVLKE 233
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDA 138
Q+ G P + TY T+L G+ + ++ E EMK C +D T+T ++
Sbjct: 234 MVQR----GIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCE--IDVVTYTTVIHG 287
Query: 139 LLYSGSIKVVGLYALCIFGEIVK 161
+G +K A +F E+VK
Sbjct: 288 FGVAGDVK----KAKRVFHEMVK 306
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 19/152 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + NA+I R+DEA ++L +E KGL+PD ++Y+ +ISA K
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 456
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATL---LMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
N+Q+ + G PD TY++L L G + D L + + ++ L D
Sbjct: 457 LNQQMLEK-------GVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKL----GLQPDE 505
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
T+T+++D G+++ AL + ++VK
Sbjct: 506 FTYTSLIDGHCKEGNVE----SALSLHDKMVK 533
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVT 70
K N + N+++ +A ++++A ++ E V +GL PD +SYN L+ C +
Sbjct: 256 LKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEAL 315
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
F E + G PD+ T+ +L+ A +L+ + +V +M+ L ++
Sbjct: 316 SVFAEMTQK--------GIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRE-RGLQMNEV 366
Query: 131 TFTAMVDALLYSG 143
TFTA++D G
Sbjct: 367 TFTALIDGFCKKG 379
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
FE N+ + + + I +++I +R+ +A+ + +++ K GL+PD +Y LI
Sbjct: 455 FELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDG 514
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K ++ + ++++ G PD+ TY+ L+ G + +++F++
Sbjct: 515 HCKEGNVESALSLHDKM-------VKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 566
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM-PFN 74
++++N + + S+ +++A ++ E + GL P+ +++ LI KT +D+ M +
Sbjct: 210 SVLINGLCKESK----MNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYK 265
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L+ GF PD+ TY TL+ G DL+ +++ EM S L D+ T+T
Sbjct: 266 EMLRQ--------GFSPDLITYNTLIYGLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTT 316
Query: 135 MVDALLYSGSIKVVGLY 151
++D G ++ Y
Sbjct: 317 LIDGSCKEGDLETALYY 333
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + + + K GL P +S+N L++ I+ LD + + G PD++
Sbjct: 155 AQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM-------HASGVQPDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +GSI + A+
Sbjct: 208 TYSVLINGLCKESKMNDANELFGEMIG-NGLVPNGVTFTTLIDGHCKTGSIDL----AME 262
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+ E++++ G P Y ++++ L + D
Sbjct: 263 TYKEMLRQ-----GFSPDLITYNTLIYGLCKKGD 291
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I +A R DEAYQIL +E G +PD +++ ++I +L
Sbjct: 245 KPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKD 304
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDR 129
++K + QK PD TY TLL + D QS++EI M + N++
Sbjct: 305 VFWKMKASDQK-------PDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIV--- 354
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
++TA+VDAL G + AL +F E+ ++ G+ P+ + Y S++
Sbjct: 355 -SYTAVVDALCQVGRLD----EALAVFDEMKEK-----GISPEQYSYNSLI 395
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + AV++A + R+DEA + + + EKG+ P+ SYN LIS +K D +
Sbjct: 352 NIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRAL--- 408
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV-FEMKSCCNLILDRSTFT 133
+L ++ C G P+ +T+ L + + + K QSL I +E ++ D +
Sbjct: 409 -ELFNHMNAC---GPSPNGYTH-VLFINY-YGKSGQSLKAIQRYEHMKSKGIVPDVAAAN 462
Query: 134 AMVDALLYSGSI 145
A++ +L SG +
Sbjct: 463 AVLSSLARSGRL 474
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N ++ R A + QI E VE+G+ PD SY +LI +L+ +
Sbjct: 910 KPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLS 969
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ QL + G PD+ Y L+ G ++ ++ + + EMK
Sbjct: 970 YFRQLLEL-------GLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMK 1010
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A ++ RI+E ++ E KG E ++YN +IS +K+K+L EQ D
Sbjct: 812 NLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRL-------EQAID 864
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S GF P TY LL G A + + EM
Sbjct: 865 LYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEM 904
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 41/172 (23%)
Query: 11 EHWKLNTIV-----MNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
EH K IV NAV+ + + R+ A ++ E + G+ PD+++Y ++I C K
Sbjct: 447 EHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKA 506
Query: 65 KKLDVTMPFNEQLKDNG------------QKCSSGG--------FH--------PDIFTY 96
K D M F + + G GG FH P TY
Sbjct: 507 SKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTY 566
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRSTFTAMVDALLYSGSI 145
TLL G ++ ++ ++ EM NLI T+ ++D L +G +
Sbjct: 567 NTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLI----TYNTVLDCLSKNGEV 614
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N V++ + ++ A +L S+ EKG PD SYN ++ IK ++ +
Sbjct: 597 NLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMF 656
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE--MKSCCNLILDRSTF 132
Q+K PD T T+L F ++ L V E +K+ CN D+S+F
Sbjct: 657 CQMKKI--------LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCN--TDKSSF 706
Query: 133 TAMVDALLYSGSIK 146
++++ +L ++
Sbjct: 707 HSLMEGILNKAGVE 720
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 18/149 (12%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I+ N +I+ +++RI+EA + E +KG+ P+ +YN LI K K E+
Sbjct: 984 IIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEE 1043
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
L G K P++FTY L+ G+ + + + C + + S TA++
Sbjct: 1044 LLIKGWK-------PNVFTYNALIRGY----SVSGSTDNAYAAYDC--VAVGVSLKTALI 1090
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCS 165
L+ I + A +F E+ +R C
Sbjct: 1091 SGLVDENLINI----AEGLFAEMKRRGCG 1115
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 22/169 (13%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T+V+N + RE +R+DEA+ +LE +V G EPD ++YN+ I K +++D +
Sbjct: 45 TVVINGL---CRE-KRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLK 100
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ + +KC P TY L+ G A L + I+ +M N + T+T +
Sbjct: 101 KMDE--KKC-----LPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLK-TYTVV 152
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+D L +G ++ A IF +++ C P +Y +++ LA
Sbjct: 153 IDGLSKAGRVE----EARRIFVDMLGNGCR-----PDAFVYTALISGLA 192
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 32 RIDEAY-QILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+DEA Q+ E+VE+G PD+++Y +I K +++ ++++ G+
Sbjct: 304 RLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR-------GYE 356
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
PD TYA L+ GF AK + + +M ++ T+ ++D L +G +
Sbjct: 357 PDAVTYAALIDGFMKAKMIPKAHRVYRQMLQ-SGTVVSTVTYNIILDGLCKAGRV 410
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 21 NAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
VI+ +A R++EA +I ++ + G PD+ Y LIS K KLD + + Q+ +
Sbjct: 150 TVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVE 209
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
NG + G PD+ + ++ + +L+ L E+ +L L TF +V AL
Sbjct: 210 NG---CARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDD--SLDLTHFTFNPLVAAL 264
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 28/169 (16%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+++G EP+ +SYNI+I + KL + E+L + C PD++T+ + L G
Sbjct: 456 LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR-RLC------PDVYTFNSFLHG 508
Query: 103 FRHAKDLQS----LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGE 158
D L E + + NL +++ ++D + +G ++V L IF E
Sbjct: 509 LCQRLDTVGDGVELFESMVSQGTSPNL----HSYSILMDGICRAGGLEVT----LEIFHE 560
Query: 159 IVKRVCSNPGLWPKPHLYVSMMHEL--AARVD--YDIVKSPYRRMWPDS 203
+V R G+ P ++ +++ L A RVD ++ + RR PD+
Sbjct: 561 MVSR-----GVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDA 604
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
++T V A++ + ++D A +L+ E PD +++ ++I+ + K+LD
Sbjct: 7 VDTRVCTALLNGLCKTGQLDRAMLLLD--EMPCSPDMVAFTVVINGLCREKRLDEAFSVL 64
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
E + G PD TY + G A+ + +++ +M K C + T+
Sbjct: 65 E-------RAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTV---TY 114
Query: 133 TAMVDALLYSGSI 145
TA+VD LL +G +
Sbjct: 115 TALVDGLLKAGRL 127
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
T+ A+++ +A R+DEA ILE VEKG P +Y ++I K +++
Sbjct: 110 TTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIF 169
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ NG + PD F Y L+ G L L + +M
Sbjct: 170 VDMLGNGCR-------PDAFVYTALISGLAKIGKLDEALVYLNQM 207
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N I A + R+DEA +++ G PD ++Y +I K +LD M Q+
Sbjct: 429 VFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQM 488
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR------ST 131
D+G PDI T+ TL+ GF + E+ +EM +DR +T
Sbjct: 489 IDDG-------LSPDIITFNTLIHGFALHGKWEKAEELFYEM-------MDRGIPPNVNT 534
Query: 132 FTAMVDALLYSGSI 145
F +M+D L G +
Sbjct: 535 FNSMIDKLFKEGKV 548
>gi|303289811|ref|XP_003064193.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454509|gb|EEH51815.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 401
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 33 IDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
++ A ++LES+ G+ ++YN LI AC+ + E + + G P
Sbjct: 245 LNRARRVLESMRASGVSTTVVTYNTLIDACVSAGEP------TEAMFGVLSALVAAGHRP 298
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
D+ TY TLL F A D + + EM++ + D S + ++DAL+ +G +
Sbjct: 299 DVVTYTTLLKHFSRAGDANAARWLAREMEADVAVAPDASAYNCLIDALVKAGEV 352
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDV 69
++ L+ V +++ ++DEA ++ E ++ KG++P + YN +I K ++
Sbjct: 479 QNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMND 538
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--NLI 126
+ +++KD G PD FTY+T++ G+ DL + L++ +M K C N++
Sbjct: 539 ALTCVQRMKD-------GDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVV 591
Query: 127 LDRSTFTAMVDALLYSG 143
T+T++++ +G
Sbjct: 592 ----TYTSLINGFCRTG 604
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMP-FNEQLK 78
NA+I+ + +++A ++ ++ G PD +Y+ +I +K L + F + +K
Sbjct: 524 NAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVK 583
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
QKC P++ TY +L+ GF D S E FE L + T+T ++
Sbjct: 584 ---QKCK-----PNVVTYTSLINGFCRTGD-SSRAEKTFEEMRSSGLKPNVVTYTILIGC 634
Query: 139 LLYSGSI 145
G I
Sbjct: 635 FCKEGKI 641
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 45/217 (20%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVT-MP 72
L+ + A++ A +D A + + VE+G+ PD+ YN+L++ K +L +
Sbjct: 413 LDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLL 472
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAK--DLQSLLEIVFE----------- 118
E L N D F ATL+ GF RH K + + L E+
Sbjct: 473 LVEMLHQN--------LSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYN 524
Query: 119 --MKSCCNLILDRSTFTAMV---------DALLYS----GSIKVVGLY-ALCIFGEIVKR 162
+K C + T + D YS G +K L+ AL +FG++VK+
Sbjct: 525 AMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQ 584
Query: 163 VCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
C P Y S+++ D + + M
Sbjct: 585 KCK-----PNVVTYTSLINGFCRTGDSSRAEKTFEEM 616
>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Brachypodium distachyon]
Length = 486
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ R +N ++ AQ+ DEA +EK G+ P+ ++N L+ A K+K
Sbjct: 128 IMRREGVVNVETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKN 187
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNL 125
+ +++ +G F+PD TY+ LL G+ A +L + E+ EM + C
Sbjct: 188 VRKAQEIFDKM--------NGRFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQ- 238
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
D T+ MVD+L +G ++ A+ + ++ R C P +Y ++H
Sbjct: 239 -PDIVTYGIMVDSLCKTGRVE----EAVLVVQDMSSRGCQ-----PTTFIYSVLVH 284
>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
Length = 461
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 20/155 (12%)
Query: 34 DEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D+AY E +E+G+ PD ++YN +++A K + +D M ++ N G PD
Sbjct: 223 DKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKN-------GVMPD 275
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI-LDRSTFTAMVDALLYSGSIKVVGLY 151
TY +++ G+ + + + I+ +M C + + D T+T+++D L +G +
Sbjct: 276 CITYNSIVHGYCSSGQSKEAIGILEKM--CSDGVEPDAVTYTSLMDYLCKNGRC----IE 329
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
A I ++KR GL P Y +++H A +
Sbjct: 330 ARKILDSMIKR-----GLKPNVITYSTLLHGYATK 359
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 17/176 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTK 65
V ++ +++ I+ ++++ +R A I+ E G P SYNIL+
Sbjct: 124 VIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHES 183
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ + + D+G C PD+ +Y+T++ G D EM +
Sbjct: 184 RSQEALELLHMMADDGGDCP-----PDVVSYSTIIDGLFKEGDSDKAYSTYHEMLE-RGI 237
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ D T+ +V AL + ++ A+ + +VK G+ P Y S++H
Sbjct: 238 LPDVVTYNTIVAALCKAQAMD----KAMDVLNRMVKN-----GVMPDCITYNSIVH 284
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP- 72
L+ I N +I + +++E +++ E V++G+EPD+ +YN+LI + KLD +
Sbjct: 591 LDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNL 650
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+NE C S P+++TY ++ G+ A ++ ++ E+ + NL L+ +
Sbjct: 651 WNE--------CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT-QNLELNSVVY 701
Query: 133 TAMVDALLYSGS 144
++ A +G+
Sbjct: 702 NTLIRAYCRNGN 713
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I + + EA ++L+ +E+G D ++YN LIS C K K++
Sbjct: 557 NLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE------ 610
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E K G+ G PD FTY L+ G L + + E KS +L+ + T+
Sbjct: 611 EGFKLRGEMVKQ-GIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKS-RDLVPNVYTYGV 668
Query: 135 MVDA 138
M+D
Sbjct: 669 MIDG 672
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + +DEA++ E V+ G+ ++Y++LI+ +K +K + N
Sbjct: 347 NVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEA---N 403
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ +K GF P+ Y TL+ G+ +L L I +M S + + T +
Sbjct: 404 SVLKETLEK----GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVS-KGINPNSVTLNS 458
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCS-NPGLW 170
++ G ++ A CI E++ R S NPG +
Sbjct: 459 IIQGFCKIGQME----QAECILEEMLSRGFSINPGAF 491
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T +++I R+++A +++ + K GL P+ + Y LI K ++D
Sbjct: 733 TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMD------- 785
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ + Q+ SS HP+ TY ++ G+ + D+++ +++ EM ++ D T+ +
Sbjct: 786 KVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVG-KGIVPDTVTYNVL 844
Query: 136 VDALLYSGSIK 146
+ G I+
Sbjct: 845 TNGFCKEGKIE 855
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+V +I+A + + ++ E +G++ D ++YN L + + + L
Sbjct: 348 NTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIV 407
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++++NG K PD TY TL+ GF +L +E+ EM S + LD T+T
Sbjct: 408 EEMRNNGLK-------PDKVTYTTLIDGFCKEGELDMAMEMKQEM-SDEGVALDEVTYTT 459
Query: 135 MVDALLYSG 143
++ L SG
Sbjct: 460 LISGLSKSG 468
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + + NA+ + + A I+E + GL+PD ++Y LI K +LD+ M
Sbjct: 381 KTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAME 440
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++ D G D TY TL+ G + I+ EM L D +T+
Sbjct: 441 MKQEMSDEGVAL-------DEVTYTTLISGLSKSGRSVDSERILCEMME-AGLEPDNTTY 492
Query: 133 TAMVDALLYSGSIKV 147
T ++DA + +K
Sbjct: 493 TMVIDAFCKNSDVKT 507
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISA 60
E + ++ E L+ + +I S+ + +D + E +E GLEPD+ +Y ++I A
Sbjct: 439 MEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDA 498
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVF 117
K + +++++ G+K P + TY ++ GF K+ LL +
Sbjct: 499 FCKNSDVKTGFKLLKEMQNKGRK-------PGVVTYNVVMNGFCILGQMKNADMLLNAML 551
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ C + I T+ ++D G ++
Sbjct: 552 NIGVCPDDI----TYNILLDGHCKHGKVR 576
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E + +G+ P +++N L+S K L+ + + G PD++TY +
Sbjct: 269 EMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLM-------AKAGVAPDVYTYGAFM 321
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
G A +Q +E+ EM+ + + FT ++DA G++
Sbjct: 322 QGLCKAGRIQDAVEMFEEMRE-RGVNPNTVVFTTLIDAHCKEGNV 365
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 27/227 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
+++ R + + + ++I+ + +R+DE ++ + K GL ++++Y+IL+ ++
Sbjct: 334 DLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQS 393
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
KL++ E+L Q+ S G PD+ TY LL G L+ LEI FE
Sbjct: 394 GKLEIA----EELF---QEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEI-FEDLQKSK 445
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHE 182
+ LD +T +++ + G ++ + CS P G+ P Y M+
Sbjct: 446 MNLDIVMYTIIIEGMCKGGKVE-----------DAWNLFCSLPCKGVKPNVMTYTVMISG 494
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV 229
L + R+M D E + + L+ A L DG +
Sbjct: 495 LCKKGSLSEANILLRKMEEDGN-----EPNDCTYNTLIRAHLRDGDL 536
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
IFE+ + + L+ ++ +IE + ++++A+ + S+ KG++P+ ++Y ++IS
Sbjct: 437 IFED---LQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 493
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L +++++G + P+ TY TL+ DL + +++ EM
Sbjct: 494 GLCKKGSLSEANILLRKMEEDGNE-------PNDCTYNTLIRAHLRDGDLTASAKLIEEM 546
Query: 120 KSCCNLILDRSTFTAMVDAL 139
KS C D S+ ++D L
Sbjct: 547 KS-CGFSADASSIKMVIDML 565
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N I N +I+ + ++ EA ++ E + KG+ P++++YN L+ C++ + +
Sbjct: 274 NVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNML 333
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ +++N CS PDI T+ +L+ G+ K + +++ F S L+ + T++
Sbjct: 334 DLMVRNN---CS-----PDIVTFTSLIKGYCKVKRVDEGMKL-FRKISKRGLVANTVTYS 384
Query: 134 AMVDALLYSGSIKV 147
+V SG +++
Sbjct: 385 ILVQGFCQSGKLEI 398
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +N +I + AY +L V K G EPD+ ++N LI+ K+ +
Sbjct: 99 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLV 158
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +N G P++ TY +++ G + D L+++ +M N+ D T++
Sbjct: 159 ARMVEN-------GCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDE-RNVKADVFTYST 210
Query: 135 MVDALLYSGSIKVVGLYALCIFGEI 159
++D+L G I A+ +F E+
Sbjct: 211 IIDSLCRDGCIDA----AISLFKEM 231
>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
Length = 798
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 30 AQRIDEAYQI-LESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
A R +E +Q +E +E+ PD + Y I+I C + ++D F +++K+
Sbjct: 328 AGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEK------- 380
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
F PD F Y TLL + DL ++ EM N++LD +T T M+ L
Sbjct: 381 RFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQ-NNVVLDTNTHTIMIHGL 431
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 56/204 (27%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD----- 68
L+T +I + Q +DEA Q+ + VE G P ++YN+LI + +L+
Sbjct: 419 LDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARML 478
Query: 69 ---------------VTMPFNEQLKDNG--QK-----CSSG---------------GFHP 91
+T+ N Q+KD+ QK C SG G P
Sbjct: 479 FYKMEVGNNPSLFLRLTLGAN-QVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVP 537
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL-----------L 140
D+ TY TLL G ++L L + E++ LD T+ ++D+L L
Sbjct: 538 DVVTYNTLLNGLCKVRNLDGALRLFRELQ-VKGFSLDEITYGTLIDSLLRAHRYNDAMTL 596
Query: 141 YSGSIKVVGLYALCIFGEIVKRVC 164
+ + + G +L I+ I++ +C
Sbjct: 597 FQDILHIGGTPSLSIYNSIMRSLC 620
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 41/181 (22%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E++ + + + ++ +I EA RID+A+ + + EK PD+ YN L+ A +
Sbjct: 340 EVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDS 399
Query: 65 KKLD-------------VTMPFN-----------EQLKDNGQKCSSG----GFHPDIFTY 96
LD V + N +QL D + G G HP + TY
Sbjct: 400 GDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTY 459
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKS------------CCNLILDRSTFTAMVDALLYSGS 144
L+ G A L+ + ++M+ N + D + +VD++ SG
Sbjct: 460 NVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQ 519
Query: 145 I 145
+
Sbjct: 520 V 520
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 28/186 (15%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K +TI+++++ A + + EA +L S+E KG PD ++YN +S K ++D +
Sbjct: 245 KTHTILLSSMCNAGQ----LKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIE 300
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGF----RHAKDLQSLLEIVFEMKSCCNLILD 128
E L+ +G F + Y+ L+ G R+ + Q +E++ + +++L
Sbjct: 301 RLEALR------RTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVL- 353
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+T M+ +G I A F E+ ++ P Y +++ L D
Sbjct: 354 ---YTIMIRGCAEAGRID----DAFAFFDEMKEK-----RFTPDTFCYNTLLKALCDSGD 401
Query: 189 YDIVKS 194
D +S
Sbjct: 402 LDGARS 407
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 39/213 (18%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+F+ + + + N N +++ +A+++DEA +++ E GL PD ++Y+ L+
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382
Query: 60 ACIKTKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHP 91
K KLD E++ G + + G P
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D+ TY TLL G A + + + +M + D ++T ++ AL SG + G +
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVA-AKCTPDVFSYTIIITALCRSG--QAAGAH 499
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
A IF E+VKR G+ P LY S++ LA
Sbjct: 500 A--IFQEMVKR-----GVLPDTVLYHSLLDGLA 525
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILE--SVEKGLEPDSLSYNILISACIKTKKLDVTM 71
KLN I + VI+ +A R+D+A +I + S G PD +++N L+ +++
Sbjct: 105 KLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAF 164
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDR 129
E + + G P++ +Y+TLL G A L + EM KSC + D
Sbjct: 165 VLFEYM-------AKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSC---VPDL 214
Query: 130 STFTAMVDALLYSGSI 145
+T+ V L + +
Sbjct: 215 VAYTSFVTGLCKANRV 230
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
++ ++ + N ++A +A AY+ + +++ G PD +Y+I++ K +LD
Sbjct: 31 QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
QL+++G K ++ TY+ ++ G A + LEI M + + D
Sbjct: 91 KAKELLGQLRESGVK-------LNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPD 143
Query: 129 RSTFTAMVDAL 139
TF +++ L
Sbjct: 144 VVTFNSLLKGL 154
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 38/218 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++++ +A+R +EA +L+ +E G P ++YN LISA +K L+ +
Sbjct: 290 DKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELK 349
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC-------NLI 126
++++ G K PD+ TY TL+ G + + L EM ++ C N +
Sbjct: 350 QEMEFRGMK-------PDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNAL 402
Query: 127 LD----RSTFTAMV---DALLYSGSIKVVGLYA--LCIFGEI--------VKRVCSNPGL 169
+ R FT M+ D L +G + V + L +FG+ V + G
Sbjct: 403 IKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY 462
Query: 170 WPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPD 202
P+ YVS++ + +D Y+RM +PD
Sbjct: 463 IPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPD 500
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
+L+ N +I R EA Q+ + ++ G EPD +++N L+ K ++
Sbjct: 253 ELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARR------ 306
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+E+ +K + G P + TY +L+ + L+ LE+ EM+ + D T+
Sbjct: 307 -HEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEME-FRGMKPDVVTY 364
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
T ++ L G I AL + E+V+ CS
Sbjct: 365 TTLISGLDRIGKIDA----ALATYSEMVRNGCS 393
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA++ R+ EA IL VE+GL PD +SY+ +I+ + ++L
Sbjct: 416 SVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMK 475
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++ + G PD TY++L+ G + L ++ EM L D T+T+
Sbjct: 476 EEMVEK-------GVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMR-RGLPPDEVTYTS 527
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
+++A G + AL + E+V+R G P Y +++ L + + K
Sbjct: 528 LINAYCVDGELS----KALRLHDEMVQR-----GFLPDNVTYSVLINGLNKKARTKVAK 577
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N+VI R+ E +++E + KGL PD ++YN L++ K L +
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLL 335
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ G P++ TY TL+ A +L +EI +M+ L + T+T
Sbjct: 336 SEMVGKG-------LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMR-VRGLRPNERTYTT 387
Query: 135 MVDALLYSG 143
++D G
Sbjct: 388 LIDGFCQKG 396
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I +++ + +EK G+ P+ ++YN LI A K KK+ M
Sbjct: 206 NVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALL 265
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + GG ++ +Y +++ G + + E+V EM+ L+ D T+
Sbjct: 266 RAM-------AVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRG-KGLVPDEVTYNT 317
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+V+ G++ L + E+V + GL P Y ++++
Sbjct: 318 LVNGFCKEGNLH----QGLVLLSEMVGK-----GLSPNVVTYTTLIN 355
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM-PFN 74
++++N + + S+ +++A ++ E + GL P+ +++ LI KT +D+ M +
Sbjct: 210 SVLINGLCKESK----MNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYK 265
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L+ GF PD+ TY TL+ G DL+ +++ EM S L D+ T+T
Sbjct: 266 EMLRQ--------GFSPDLITYNTLIYGLCKEGDLKQAQDLIDEM-SMKGLKPDKITYTT 316
Query: 135 MVDALLYSGSIKVVGLY 151
++D G ++ Y
Sbjct: 317 LIDGSCKEGDLETAFKY 333
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + + + K GL P +S+N L++ I+ LD + + G PD++
Sbjct: 155 AQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGS-------GIQPDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +GSI + A+
Sbjct: 208 TYSVLINGLCKESKMNDANELFDEMIG-NGLVPNGVTFTTLIDGHCKTGSIDL----AME 262
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+ E++++ G P Y ++++ L D
Sbjct: 263 AYKEMLRQ-----GFSPDLITYNTLIYGLCKEGD 291
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 39/213 (18%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+F+ + + + N N +++ +A+++DEA +++ E GL PD ++Y+ L+
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382
Query: 60 ACIKTKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHP 91
K KLD E++ G + + G P
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D+ TY TLL G A + + + +M + D ++T ++ AL SG + G +
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVA-AKCTPDVFSYTIIITALCRSG--QAAGAH 499
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
A IF E+VKR G+ P LY S++ LA
Sbjct: 500 A--IFQEMVKR-----GVLPDTVLYHSLLDGLA 525
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTM 71
KLN I + VI+ +A R+D+A +I +++ G PD +++N L+ +++
Sbjct: 105 KLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAF 164
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDR 129
E + + G P++ +Y+TLL G A L + EM KSC + D
Sbjct: 165 VLFEYM-------AKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSC---VPDL 214
Query: 130 STFTAMVDALLYSGSI 145
+T+ V L + +
Sbjct: 215 VAYTSFVTGLCKANRV 230
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
++ ++ + N ++A +A AY+ + +++ G PD +Y+I++ K +LD
Sbjct: 31 QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
QL+++G K ++ TY+ ++ G A + LEI M S + D
Sbjct: 91 KAKELLGQLRESGVK-------LNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPD 143
Query: 129 RSTFTAMVDAL 139
TF +++ L
Sbjct: 144 VVTFNSLLKGL 154
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N +I A R+ +AY++LE VE+ + P+ +Y IL++ ++ K +
Sbjct: 87 TVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVF 146
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++K NG K P+ TY TL+ A ++ L ++ E +S L D T T
Sbjct: 147 QEMKRNGCK-------PNPITYGTLIQHLSRAGEIDEALRVMIEQRS-LELPTDVITCTT 198
Query: 135 MVDAL 139
+V L
Sbjct: 199 IVGGL 203
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+F+E + R K N I +I+ A IDEA +++ E L D ++ ++
Sbjct: 145 VFQE---MKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVG 201
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +LD + F E+++ G + P+ TY+ L+ GFR +L ++ E
Sbjct: 202 GLCKASRLDDALKFMEEMRQMGVR-------PNEVTYSNLVHGFRQHGELDRVIRFFEEE 254
Query: 120 KSCCNLILDRSTFTAMVDALLYSG 143
K+ L+ + + +DAL +G
Sbjct: 255 KARKGGSLEAAAYPGYLDALCKAG 278
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 12/149 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
E + R K + + + +I + ++ +A+++LE +E G P+ ++YN ++ K+
Sbjct: 323 EDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKS 382
Query: 65 KKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K+D V + LK +CS PD+ TY+ ++ G A L S +++ FE+
Sbjct: 383 GKMDEVHRVYEMMLK---SRCS-----PDVVTYSIIMNGLSKAGMLDSAVKL-FELIKSS 433
Query: 124 NLILDRSTFTAMVDALLYSGSI-KVVGLY 151
D + ++ ++ +L +G + + G+Y
Sbjct: 434 REGPDAAAYSMVITSLCRAGKLEEACGMY 462
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 85/177 (48%), Gaps = 19/177 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
E V + +K + ++ +I+ ++ + +A +++E +E +PD SYN +IS K
Sbjct: 86 ESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKAN 145
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCN 124
++D ++++ S GF PD+ TY ++ L+ E++ E +K C
Sbjct: 146 QIDSANQVFDRMR-------SRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCK 198
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ T+T +++A + G I AL +F E+V R GL P + Y +++
Sbjct: 199 PSV--ITYTILIEATILEGRIN----EALELFDELVSR-----GLRPDLYTYNAIIR 244
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I + R+ EA +LE + EKGL PDS SY+ LISA K +LD+ + +
Sbjct: 305 NVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYL 364
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
E++ S G PDI Y T+L
Sbjct: 365 EKM-------VSDGCLPDIVNYNTIL 383
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
FE + + ++ K + I +IEA+ RI+EA ++ E V +GL PD +YN +I
Sbjct: 186 FEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRG 245
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
K D + F L S+ G +PD+ +Y LL F
Sbjct: 246 ICKEGMEDRALDFVRHL-------SARGCNPDVVSYNILLRSF 281
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 23 VIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
++ S A + +E+ LESV KG +PD + LI ++ L M E L+ G
Sbjct: 68 LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
PD+++Y ++ GF A + S ++ M+S D T+ M+ +L
Sbjct: 128 D--------PDVYSYNAMISGFSKANQIDSANQVFDRMRS-RGFSPDVVTYNIMIGSLCS 178
Query: 142 SGSIKVVGLYALCIFGEIVKRVC 164
G +++ A + E++K C
Sbjct: 179 RGKLEL----AFEVMDELLKDGC 197
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 30 AQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
+I I E + KG++PD ++YN LIS + +D + ++ + F
Sbjct: 425 GNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDME-------ATRF 477
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSG 143
P + ++ +L+G A + +E++ M K C + + +++ +++ + Y+G
Sbjct: 478 QPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGC---LPNETSYVLLIEGIAYAG 530
>gi|414591646|tpg|DAA42217.1| TPA: hypothetical protein ZEAMMB73_097907 [Zea mays]
Length = 476
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R +++ I+ N +++ EA+R DEA IL + E G PD SYNIL+ + K
Sbjct: 139 RTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVSSYNILLKSLCNQGKS 198
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ + G CS PD+ Y T++ GF D+ ++ EM +
Sbjct: 199 GQADDLLRMMAEGGAVCS-----PDVVAYTTVIDGFFKEGDVNKACDLFKEMVQ-RGIPP 252
Query: 128 DRSTFTAMVDAL 139
D T++++V AL
Sbjct: 253 DFVTYSSVVHAL 264
>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKT 64
+ R H KLNTI N+ I + ++A + S+ K + PD++++ +LIS C K
Sbjct: 476 QAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKM 535
Query: 65 KK-----------LDVTMPFNEQLKDNGQ---------KCSSGGFHPDIFTYATLLMGFR 104
K +D+ +P ++ +G+ K G PD+ TY +L +
Sbjct: 536 TKYCEALEFLSEMMDLKIPMTKEAYSSGKITEAESMFNKMKMAGCSPDVVTYTMMLHAYN 595
Query: 105 HAKDLQSLLEIVFEMK 120
A+ + ++ EM+
Sbjct: 596 AAEHWKKACALLQEME 611
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I A + + A I+E ++K + P +YN LI+AC + + +++ +
Sbjct: 174 NALINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTE 233
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
N G PD+ T+ +L ++ L FE+ N+ D +T ++ L
Sbjct: 234 N-------GVGPDLVTHNIILSAYKTGAQYAKALS-YFELMKGTNIRPDTTTLNIIIYCL 285
Query: 140 LYSGSI-KVVGLY 151
G K +G++
Sbjct: 286 TKLGQYEKAIGIF 298
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V +GL+P+ +SYN L+ A + N++ + G PD+ +Y +LL
Sbjct: 339 VAEGLKPNIVSYNTLMGAY-------ASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNS 391
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
+ ++ + E VFEM L + ++ AM+DA +G
Sbjct: 392 YGRSQQPKKARE-VFEMMKRDKLKPNIVSYNAMIDAYGSNG 431
>gi|388851710|emb|CCF54706.1| uncharacterized protein [Ustilago hordei]
Length = 1372
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LN +I+A A ID A L +++E+G+ P + +N+L+ ++ +D +
Sbjct: 643 LNGKAYRQLIQACNRAGDIDLAEHYLTQALERGIRPRTSDFNLLVDMHVRRTNVDAALAI 702
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+++K+ G PD +TY L+ GF +D +S + M + + DR T+
Sbjct: 703 FDEMKE-------FGVQPDKYTYTILINGFALRRDPESAAHALRAMIA-AGVTPDRITYA 754
Query: 134 AMVDALLYSG 143
A+++ + SG
Sbjct: 755 ALLNCYVESG 764
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +IE A+++ EA ++ + +VE G P+S++Y+++I+ K + L V
Sbjct: 431 NIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLF 490
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++KD+ G P + Y L+ L+ + EM++ N +D +F
Sbjct: 491 CKMKDS-------GIRPTVIDYNALMTSLCREDSLEQARSLFQEMRN-VNHNVDVVSFNI 542
Query: 135 MVDALLYSGSIK 146
++D L +G +K
Sbjct: 543 IIDGTLKAGDVK 554
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R +A ++L+ V+KG EP +L+YN++++ K ++D E + G+K
Sbjct: 305 RAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKK------- 357
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEI 115
PD TY TLL G A + +++
Sbjct: 358 PDAVTYNTLLKGLCGAGKIHEAMDL 382
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLE---PDSLSYNILI 58
F ++ + + +N +N V++ + + D+A + +++ + PD ++YN L+
Sbjct: 97 FSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLV 156
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQ--------------KCSSG---------------GF 89
+ K K+L E +K G C SG G
Sbjct: 157 NGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGL 216
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
D+F Y++L+ F D+++ E+ EM
Sbjct: 217 KADVFVYSSLISAFCGEGDIETGRELFDEM 246
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+F+E VN ++ + N +I+ + +A + A ++L E L PD+++++ILI+
Sbjct: 524 LFQEMRNVNHN---VDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILIN 580
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K LD M E++ S G P + + +LL G+ + + ++ ++ +M
Sbjct: 581 RFSKLGMLDEAMGLYEKM-------VSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQM 633
Query: 120 KSCCNLILDRSTFTAMVDALL 140
+++LD S T+ + A L
Sbjct: 634 AD-KDVVLD-SKLTSTILACL 652
>gi|302781402|ref|XP_002972475.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
gi|300159942|gb|EFJ26561.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
Length = 406
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
+I +R ++K + + N +I+ + +IDE + + + +PD SYN L+ +
Sbjct: 247 KIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSCYQKMRLHFQPDIFSYNTLLGRLGRAG 306
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
++D+ F L D S G D TYA L+ G+ A +L L + EMKS
Sbjct: 307 RVDL---FASVLDD----MSRDGVQQDRITYAILVEGYARAGNLDVALAYLEEMKS-SGF 358
Query: 126 ILDRSTFTAMVDALLYSG 143
S +V++LL +G
Sbjct: 359 SPTPSALEVLVNSLLKAG 376
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 39 ILESVEKGL-EPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96
I ES+ K L P++ +YN LIS+ C K + F+ K C PD FTY
Sbjct: 70 IFESMRKNLVRPNTQTYNFLISSLCSLGKMAEARWRFSYMKK----YCD-----PDEFTY 120
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIF 156
A L+ GF D + LE++ EM + L + + F M+DA SG + V + +F
Sbjct: 121 AALINGFCKCMDTEVTLELLEEMLA-RGLRPNLALFNMMMDAHSRSGKHEQV----IALF 175
Query: 157 GEIVKRVCSNPGLWPKPHLYVSMMHELA--ARVD 188
+V+ C P P Y ++ A R+D
Sbjct: 176 ERMVEHECR-----PDPKSYRVLVEAFAVSGRID 204
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +++A + + ++ + E VE PD SY +L+ A + ++D F
Sbjct: 151 NLALFNMMMDAHSRSGKHEQVIALFERMVEHECRPDPKSYRVLVEAFAVSGRIDEAFGFV 210
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ D+ P + Y TL+ A + LEI +++K N D T+
Sbjct: 211 QRYADSENA-------PHLGAYNTLMNRLGKANKAHAALEIFYKIKDRPNYKPDLVTYNV 263
Query: 135 MVDALLYSGSI 145
++D L G I
Sbjct: 264 LIDLLGKVGKI 274
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I A + R D+A + +S+E +G++P+++++N LI+ K+ K D+ F E++
Sbjct: 255 NALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM-- 312
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G PD +TY++ + K Q L + EM
Sbjct: 313 -----VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEM 347
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
W+ +T AV++ ++ EA ++L E EKGL P ++ +I+A K ++ +
Sbjct: 107 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDAL 166
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E +K G K P+++TY L+ GF + + + ++ +M++ C + D T
Sbjct: 167 RVLELMKLRGCK-------PNVWTYNALVQGFCNEGKVHKAMTLLNKMRA-CGVNPDAVT 218
Query: 132 FTAMVDALLYSGSIK 146
+ ++ G I+
Sbjct: 219 YNLLIRGQCIDGHIE 233
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V G PD+ ++N LI +T ++DV +D K GF D+ +YATL+ G
Sbjct: 2 VRSGWRPDAYTFNSLIVGYCRTNQVDVA-------RDLFDKMPLRGFAQDVVSYATLIEG 54
Query: 103 FRHAKDLQSLLEIVFEM 119
A + +E+ EM
Sbjct: 55 LCEAGRIDEAVELFGEM 71
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT ++ + +AQR +EA + + +G P+ SY+ILI+ + +K+D
Sbjct: 51 NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
++ D GG P++ TY +LL G L+ +++ M + C D +
Sbjct: 111 NEMID-------GGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGC---PPDGVVY 160
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++D G + A +F E++++ C P Y S++ + + ++ V
Sbjct: 161 NVLIDGFSKKGDMGE----AYRLFEEMLEKGC-----IPTVFTYNSLLSGFSRKGEFGRV 211
Query: 193 KSPYRRM 199
+S ++ M
Sbjct: 212 QSLFKDM 218
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ +V N +I+ + + EAY++ E +EKG P +YN L+S + + V F
Sbjct: 156 DGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLF 215
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ L+ Q C P+IFT+ LL GF D+ + EM+S
Sbjct: 216 KDMLR---QGCV-----PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRS 255
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 29 EAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
EAQR+ + E + G+ PD +SYNILI K+ LD + ++ + G
Sbjct: 280 EAQRL-----LREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKS-------G 327
Query: 89 FHPDIFTYATLL 100
PD F+Y+T++
Sbjct: 328 LEPDAFSYSTII 339
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+ L+ I N +I + +++E +++ E V++G+EPD+ +YN+LI + KLD +
Sbjct: 522 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 581
Query: 72 PF-NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
NE C S P+++TY ++ G+ A ++ ++ E+ + NL L+
Sbjct: 582 NLWNE--------CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT-QNLELNSV 632
Query: 131 TFTAMVDALLYSGS 144
+ ++ A +G+
Sbjct: 633 VYNTLIRAYCRNGN 646
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I + + EA ++L+ +E+G D ++YN LIS C K K++
Sbjct: 490 NLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE------ 543
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E K G+ G PD FTY L+ G L + + E KS +L+ + T+
Sbjct: 544 EGFKLRGEMVKQ-GIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKS-RDLVPNVYTYGV 601
Query: 135 MVDA 138
M+D
Sbjct: 602 MIDG 605
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + +DEA++ E V+ G+ ++Y++LI+ +K +K + N
Sbjct: 280 NVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEA---N 336
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ +K GF P+ Y TL+ G+ +L L I +M S + + T +
Sbjct: 337 SVLKETLEK----GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVS-KGINPNSVTLNS 391
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCS-NPGLW 170
++ G ++ A CI E++ R S NPG +
Sbjct: 392 IIQGFCKIGQME----QAECILEEMLSRGFSINPGAF 424
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T +++I R+++A +++ + K GL P+ + Y LI K ++D
Sbjct: 666 TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMD------- 718
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ + Q+ SS HP+ TY ++ G+ + D+++ +++ EM ++ D T+ +
Sbjct: 719 KVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVG-KGIVPDTVTYNVL 777
Query: 136 VDALLYSGSIK 146
+ G I+
Sbjct: 778 TNGFCKEGKIE 788
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ NA+I+A + RI EA ++ E + + L+PD ++Y++LI +LD
Sbjct: 255 DVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA---- 310
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ+ G S G F PD+ TY+ L+ G+ +K ++ +++ EM S ++ + T+T
Sbjct: 311 EQM--FGFMVSKGCF-PDVVTYSILINGYCKSKKVEHGMKLFCEM-SQRGVVRNTVTYTV 366
Query: 135 MVDALLYSGSIKV 147
++ +G + V
Sbjct: 367 LIQGYCRAGKLNV 379
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRI-DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +++ RI D Y VE G EP+ + YN +I K+K++D +
Sbjct: 150 DIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLL 209
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G PD TY +L+ G ++ +V M + D TF A
Sbjct: 210 NRMEVD-------GIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTK-REIYPDVFTFNA 261
Query: 135 MVDALLYSGSI 145
++DA + G I
Sbjct: 262 LIDACVKEGRI 272
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 31 QRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
R+DEA Q+ V KG PD ++Y+ILI+ K+KK++ M ++ S G
Sbjct: 305 SRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM-------SQRGV 357
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ TY L+ G+ A L ++ E +F+ C + + T+ ++ L +G I+
Sbjct: 358 VRNTVTYTVLIQGYCRAGKL-NVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIE 413
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 34/211 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ + N V++A + ++ EA+ +++ + G P+ +SYN LI+ K +++D M
Sbjct: 237 DVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYL 296
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLI---- 126
G+ C PD TY+TL+ G H + LQ + + EM +C NL+
Sbjct: 297 F------GEMCRQE-LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRI 349
Query: 127 ----LDRSTFTAMVDALLYS--GS-------IKVVGLYALCIFGEI--VKRVCSN---PG 168
L ++ + A ALL + GS + + + +C GE+ + + SN G
Sbjct: 350 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 409
Query: 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
L P Y M++ L R D +R M
Sbjct: 410 LQPDVWTYSIMINGLCRRGLLDEASKLFREM 440
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDV 69
E ++ + + +I + A ++L S V+K +P+ +YN +I + K ++ V
Sbjct: 127 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQ--V 184
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
T FN + + G PDIFTY +L+ + + + + ++ EM ++ D
Sbjct: 185 TEAFNL-----FSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVD-SKIMPDV 238
Query: 130 STFTAMVDALLYSGSI 145
+F +VDAL G +
Sbjct: 239 VSFNTVVDALCKEGKV 254
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
++ A+++ EA + E + GL+ D YN LI K+K++ +++K G
Sbjct: 194 IVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKG 253
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
+ F PD+ TY L+ G+ H KDL L + EM + D + ++ A
Sbjct: 254 R------FIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLD-AGIKPDVVAYGMLISAFCK 306
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
SG A+ +F E+ G P PH+Y +++ L +
Sbjct: 307 SGKCD----EAIKVFHEM-----EESGCMPSPHVYCMLINGLGS 341
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
++ A+++ EA + E + GL+ D YN LI K+K++ +++K G
Sbjct: 194 IVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKG 253
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
+ F PD+ TY L+ G+ H KDL L + EM + D + ++ A
Sbjct: 254 R------FIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLD-AGIKPDVVAYGMLISAFCK 306
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
SG A+ +F E+ G P PH+Y +++ L +
Sbjct: 307 SGKCD----EAIKVFHEM-----EESGCMPSPHVYCMLINGLGS 341
>gi|290985263|ref|XP_002675345.1| predicted protein [Naegleria gruberi]
gi|284088941|gb|EFC42601.1| predicted protein [Naegleria gruberi]
Length = 1231
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 17/122 (13%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTK-----KL- 67
+N IV N +I+A + + + +A +++ E + G+EP+S ++NIL+ AC +K KL
Sbjct: 401 MNNIVWNCLIQAYIQNKEVRQAIEVITEMQDYGIEPNSTTFNILLKACADSKLFEEGKLL 460
Query: 68 ---------DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ T+ N + D +K + GF ++ T+ L+ K+++ +E++ E
Sbjct: 461 HQASGQVLNNPTIELNNTI-DQFEKMKTKGFEANVITWTCLIQAHVQNKEVRQAIEVITE 519
Query: 119 MK 120
M+
Sbjct: 520 MQ 521
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+ EE E+V ++ W + I N++I+A + I +A ++ E + G+ PDS ++NILI+
Sbjct: 91 VIEEIELVKQQKW-MTIITWNSLIQAYIQENNIKKAIDVIHEMKDNGICPDSATFNILIT 149
Query: 60 ACIKTK 65
AC TK
Sbjct: 150 ACANTK 155
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ N I +I+A + + + +A +++ E + G+EP+S ++NIL++AC +K +
Sbjct: 490 FEANVITWTCLIQAHVQNKEVRQAIEVITEMQDYGIEPNSTTFNILLTACADSKLFEEGK 549
Query: 72 PFNEQLKDNGQKCSS----------------------------GGFHPDIFTYATLLMGF 103
+EQ +N + CS+ G ++ + L+
Sbjct: 550 LIHEQAIENVKDCSTELLTSIINFYTKCGHPETAIKECEKLKLKGLMNNVAVWNCLIQAH 609
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
++Q +EI+ EM+ L D +T+T ++ A
Sbjct: 610 IQNNEVQKAIEIITEMQQ-FGLNPDSTTYTIILKA 643
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N V N +I+A + + +A +I+ +++ GL PDS +Y I++ AC + + +
Sbjct: 598 NVAVWNCLIQAHIQNNEVQKAIEIITEMQQFGLNPDSTTYTIILKACTDSNLFEEGKFIH 657
Query: 75 EQLKDNGQKCSS 86
EQ +N + CS+
Sbjct: 658 EQAIENVKDCST 669
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
N I N +I A R DEA Q+L+ V GL+PD +SY+ L+ KT ++D F
Sbjct: 583 NVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLF 642
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E L+ G P TY+T+L G H + E+ M
Sbjct: 643 REMLRK--------GVTPGAVTYSTILQGLFHTRRFSEAKELYLNM 680
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
KL+ + + +I+ +AQ +D A +L+ ++KG++PD ++YN +I K + +D
Sbjct: 231 KLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEG 290
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
+ + D G K PD+ TY T++ G A+
Sbjct: 291 VLQHMIDKGVK-------PDVVTYNTIIDGLCKAQ 318
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILIS 59
F ++ + W++N +V+N ++ +A+R+DEA IL E G P+ +S N L+
Sbjct: 110 FAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLK 169
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K+++ + + ++G G P++ TY T++ G A+ + E V +
Sbjct: 170 GLCNEKRVEEALELLHTMAEDG----GGNCTPNVVTYNTIIDGLCKAQAVDR-AEGVLQH 224
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
+ LD T++ ++D L + ++
Sbjct: 225 MIDKGVKLDVVTYSTIIDGLCKAQAV 250
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N + N V+ A + IDEA I + + GL PD ++Y ILI A K ++ D + F
Sbjct: 443 NNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKF 502
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
N+ + D G P+ + +L+ G + E+ FEM
Sbjct: 503 NQMIND--------GVTPNSVVFNSLVYGLCTVDRWEKAEELFFEM 540
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ +AQ +D A +L+ ++KG++ D ++Y+ +I K + +D
Sbjct: 198 NVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVL 257
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
+ + D G K PD+ TY T++ G A+
Sbjct: 258 QHMIDKGVK-------PDVVTYNTIIDGLCKAQ 283
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + I + ++ + RID AY + E + KG+ P +++Y+ ++ T++
Sbjct: 616 KPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKE 675
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ +GQ+ DI+TY +L G + +I F+ +L + TF
Sbjct: 676 LYLNMIKSGQQ-------WDIYTYNIILNGLCKTNCVDEAFKI-FQSLCSKDLRPNIITF 727
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T M+D L G K A+ +F I + GL P Y MM +
Sbjct: 728 TIMIDVLFKGGRKK----DAMDLFASI-----PSHGLVPNVVTYCIMMKNI 769
>gi|255544107|ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548127|gb|EEF49619.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1128
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + N +++A + +D A + + + GL DS++Y ILI K ++D M
Sbjct: 661 KPRAFLYNRIMDALIKTAHLDLALVVYDDFKSDGLVEDSVTYMILIKGLCKFGRIDEMME 720
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E++K + G +PD+ YAT++ G + E+ EMK +++DR+ +
Sbjct: 721 VWEEMKRD-------GVNPDVMAYATVVTGLCKGGRVAEGYELFKEMKE-NKVLIDRAIY 772
Query: 133 TAMVDALLYSGSI 145
+++A + G I
Sbjct: 773 GVLIEAFVKDGKI 785
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N +I A R+ +AY++LE VE+ + P+ +Y IL++ ++ K + ++
Sbjct: 89 FIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQE 148
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K NG K P+ TY TL+ A ++ L ++ E +S L D T T +V
Sbjct: 149 MKRNGCK-------PNPITYGTLIQHLSRAGEIDEALRVMIEQRS-LELPTDVITCTTIV 200
Query: 137 DAL 139
L
Sbjct: 201 GGL 203
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+F+E + R K N I +I+ A IDEA +++ E L D ++ ++
Sbjct: 145 VFQE---MKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVG 201
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +LD + F E+++ G + P+ TY+ L+ GFR +L ++ E
Sbjct: 202 GLCKASRLDDALKFMEEMRQMGVR-------PNEVTYSNLVHGFRQHGELDRVIRFFEEE 254
Query: 120 KSCCNLILDRSTFTAMVDALLYSG 143
K+ L+ + + +DAL +G
Sbjct: 255 KARKGGSLEAAAYPGYLDALCKAG 278
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 12/149 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
E + R K + + + +I + ++ +A+++LE +E G P+ ++YN ++ K+
Sbjct: 323 EDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKS 382
Query: 65 KKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K+D V + LK +CS PD+ TY+ ++ G A L S +++ FE+
Sbjct: 383 GKMDEVHRVYEMMLK---SRCS-----PDVVTYSIIMNGLSKAGMLDSAVKL-FELIKSS 433
Query: 124 NLILDRSTFTAMVDALLYSGSI-KVVGLY 151
D + ++ ++ +L +G + + G+Y
Sbjct: 434 REGPDAAAYSMVITSLCRAGKLEEACGMY 462
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + R D+A Q+L+++ ++ +EPD +S+N LI+A K+ L + E L
Sbjct: 63 VFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL-ELL 121
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMV 136
+ Q G PD TY TL+ +L + + EM S C D T+ AMV
Sbjct: 122 HEVRQ----AGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECR--PDLWTYNAMV 175
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA--------RVD 188
G + L +F E+V++ G P Y S+++ A RV
Sbjct: 176 SVHGRCGKAQEAEL----MFKELVEK-----GFQPDAVTYNSLLYAFAKEGDVERVERVC 226
Query: 189 YDIVKSPYRR 198
++VK+ +R+
Sbjct: 227 EELVKAGFRK 236
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 33/147 (22%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP----------------FNEQLK 78
A ++L V + GL PD+++YN LISAC + LD + +N +
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 176
Query: 79 DNGQKCSSG-------------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+G +C GF PD TY +LL F D++ + + E+
Sbjct: 177 VHG-RCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVK-AGF 234
Query: 126 ILDRSTFTAMVDALLYSGSIKV-VGLY 151
D T+ M+ G + + +GLY
Sbjct: 235 RKDGITYNTMIHMYGKMGRLDLALGLY 261
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ ID+A ++ E + KGL P+S+++ LI K ++D+ M +
Sbjct: 199 SVLINGLCKESK----IDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYK 254
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ ++ EM S L D+ T+T +
Sbjct: 255 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM-SMKGLKPDKITYTTL 306
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 307 IDGCCKDGDL 316
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 23/200 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +SYN L++ I+ LD + + G PD++
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQPDVY 196
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 197 TYSVLINGLCKESKIDDANELFDEM-LVKGLVPNSVTFTTLIDGHCKNGRVDLA------ 249
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEE 214
EI K++ S L P Y ++++ L + D +K + + S + P+ +
Sbjct: 250 --MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD---LKQAHHLIDEMSMKGLKPD--KI 301
Query: 215 AGHLLMEAALNDGQVDLALD 234
L++ DG +D A +
Sbjct: 302 TYTTLIDGCCKDGDLDTAFE 321
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+A + ++DEA + + +E +G+ P+S+++N +I+ K K DV F E +
Sbjct: 409 NVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENM-- 466
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G+ PD +TY+ + K Q L + EM
Sbjct: 467 -----ISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEM 501
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
TIV+NA RE R+ A ++ ES+ KG EP+ +YN ++ K+ M +
Sbjct: 304 TIVVNAY---CREG-RMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLD 359
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+++ G PD+ TY L+ G + S ++ M+ L D+ T+ +
Sbjct: 360 QMRE-------CGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEG-NGLAADQYTYNVL 411
Query: 136 VDALLYSGSI 145
+DAL +G +
Sbjct: 412 IDALCKTGKV 421
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVT------MPF 73
NA+I A + A + L V G PD+ ++N LI +T++L+V MPF
Sbjct: 133 NALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPF 192
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
GF D +YA L+ GF A + LE+ EM D T
Sbjct: 193 R-------------GFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ-----PDMYTHA 234
Query: 134 AMVDALLYSG 143
A+V L +G
Sbjct: 235 ALVKGLCDAG 244
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 30/152 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N VI +A + D A LE+ + G PD+ +Y+ I KTK + F
Sbjct: 439 NSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFI 498
Query: 75 EQLKDNGQKCS----------------------------SGGFHPDIFTYATLLMGFRHA 106
+++ K S S G PD+ TY T + + +
Sbjct: 499 DEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNE 558
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
L +V EMK C I+D + ++D
Sbjct: 559 GRLDEAENVVTEMKK-CRTIVDAMAYNTLIDG 589
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
W+ T A+++ Q+ +EA +IL E + GL P ++ I+++A + ++ +
Sbjct: 261 WRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAV 320
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
E ++ G + P+++TY ++ GF +A + + ++ +M+ C
Sbjct: 321 RVFESMRFKGCE-------PNVWTYNAIVQGFCNAGKVYKAMALLDQMREC 364
>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 576
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 86/178 (48%), Gaps = 19/178 (10%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDV 69
+ +K + I+ +I+ ++R ++A +++E +E+ +PDS +YN +IS ++ + D
Sbjct: 105 KRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYGDPDSFAYNAVISGFCRSDRFDA 164
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILD 128
++K GF PD+ TY L+ L L+++ + ++ CN +
Sbjct: 165 ANRVILRMKYR-------GFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTV- 216
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
T+T +++A + GSI A+ + E++ R GL P + Y ++ + R
Sbjct: 217 -ITYTILIEATIIHGSID----DAMRLLDEMMSR-----GLQPDMYTYNVIVRGMCKR 264
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I + + EA +L + EKGL PD+ Y+ LISA K K+D+ + F
Sbjct: 317 NIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFV 376
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + S G+ PDI Y T++ L I +++ + S++
Sbjct: 377 DDM-------ISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEE-VGCPPNASSYNT 428
Query: 135 MVDALLYSG 143
M AL SG
Sbjct: 429 MFGALWSSG 437
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 30 AQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
+I ILE + G++PD ++YN LIS+ + +D + ++ +
Sbjct: 437 GDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERT-------EW 489
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSG 143
P + +Y +L+G A + +E++ M + C + +T+T +V+ + Y+G
Sbjct: 490 QPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQ--PNETTYTLLVEGVGYAG 542
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
+E E+++ E + NT N++++ + R +EA+++L + + +E D ++Y ILIS
Sbjct: 1027 YELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISE 1086
Query: 61 CIKTKKLDVTMPF-NEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIV 116
K ++ + F N+ K GF PDI Y TL+ F KD + L + V
Sbjct: 1087 QCKRADMNQALVFLNKMFK--------VGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEV 1138
Query: 117 FEMKSCCNLILDRSTFTAMV 136
++ L + T+T+M+
Sbjct: 1139 IKL----GLAPTKETYTSMI 1154
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 40/202 (19%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
++ + +I A E ++ A V K GL P+ ++Y+ +IS K +
Sbjct: 864 VDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFEL 923
Query: 74 NEQLKDNGQK-------------CSSG----------------GFHPDIFTYATLLMGFR 104
E++ NG K C G + P++ TY ++ G+
Sbjct: 924 LEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYC 983
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
+ L S E++FE L+ + +T+T ++D +G+ Y L +
Sbjct: 984 KEEKL-SRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKA--YEL-------MELM 1033
Query: 165 SNPGLWPKPHLYVSMMHELAAR 186
SN G +P Y S++ L R
Sbjct: 1034 SNEGFFPNTCTYNSIVDGLCKR 1055
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ +A + EA Q+L+ ++ G+ PD+++YN L++ K ++ D +
Sbjct: 607 DVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGIL 666
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + G PD TY TL+ G L E++ EM ++ +T+
Sbjct: 667 KNM-------IKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNT 719
Query: 135 MVDALLYSGSIK 146
++D L G +K
Sbjct: 720 IIDRLCKEGCLK 731
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ +A + ++AY++LES V G PD ++Y I++ K +LD +
Sbjct: 400 NLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMV 459
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + G C+ P + TY L+ G + I EM S
Sbjct: 460 EGMLKRG--CT-----PSVITYTALMEGLCRTGRVDEAHHIFKEMVS 499
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 52/260 (20%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I NA+I D A + L+ + E+ + PD +YNILI K K D
Sbjct: 225 DAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEML 284
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLEIVFEMK---SCC---NL 125
++ D G PD T+ +++ G A + SLL ++ E SCC L
Sbjct: 285 HEMVDR-------GVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTL 337
Query: 126 I--------LDRSTFTAMVDALLYSGSIKVVGLYA-----LCIFG------EIVKRVCSN 166
I +DR+ +VD + SG + V Y+ LC G E+VK + S
Sbjct: 338 ISGLCKQQNVDRA--KDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM-SG 394
Query: 167 PGLWPKPHLYVSMMHEL--AARVD--YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEA 222
G P Y +++ L A++ + Y++++S S+G + P+V ++++
Sbjct: 395 KGCTPNLVTYNTLIDGLCKASKTEKAYELLESLV------SSGFV-PDVVTYT--IIVDG 445
Query: 223 ALNDGQVDLALDKLSNTITR 242
+G++D AL + + R
Sbjct: 446 LCKEGRLDKALKMVEGMLKR 465
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA+++ + R+DE + E + +G P+ +YNI++ K K+D PF E +
Sbjct: 540 VYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM 599
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G PD+ +Y ++ G A + +++ +M
Sbjct: 600 H-------SAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQM 634
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+K V + A + R+ +A +I ++ PD+++YN +I + D +
Sbjct: 191 FKPEVSVYTILTRAFCKTGRLKDALEIFRNIP---SPDAIAYNAIIHGHCRKNDCDGALE 247
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
F +++ N +K + PD+FTY L+ G A E++ EM + D TF
Sbjct: 248 FLKEM--NERKVA-----PDVFTYNILIDGLCKASKTDKASEMLHEMVD-RGVTPDTVTF 299
Query: 133 TAMVDALLYSGSIK 146
+++D L +G +
Sbjct: 300 NSIMDGLCKAGKFE 313
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
E+V + + + N +I+A + +R+DEA +L V++G P ++YN++I+ K
Sbjct: 806 EMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKL 865
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K+D +++ G SS +Y L+ G + L+++ EM S
Sbjct: 866 DKVDKAWELFDEMAVRGIVASS-------VSYTVLIYGLCGQGRGKEALQVLEEMAS 915
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+E ++++YNI I K +LD ++ D +Y T+++G
Sbjct: 744 GVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT----------LRDEVSYTTVIIGLCK 793
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
A+ L ++ EM + L + TF ++DA + + AL + G +V+R CS
Sbjct: 794 AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLD----EALTLLGLMVQRGCS 849
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E++ R+ N + N +I +A+R+D+ ++ E ++GL ++++Y LI +
Sbjct: 382 ELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQA 441
Query: 65 KKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ D M F + + S G HP+I TY LL G L + +VFE
Sbjct: 442 RDCDNAQMVFKQMV--------SVGVHPNILTYNILLDGLCKNGKLAKAM-VVFEYLQRS 492
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLY 151
+ D T+ M++ + +G K+ G+Y
Sbjct: 493 TMEPDIYTYNIMIEGMCKAGKWKMGGIY 520
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +++I R+ EA Q+LE + K P+ ++YN LI+ K K++D M
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELF 416
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ S G + TY TL+ GF A+D + ++VF+ + + T+
Sbjct: 417 REM-------SQRGLVGNTVTYTTLIHGFFQARDCDN-AQMVFKQMVSVGVHPNILTYNI 468
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170
++D L +G + A+ +F E ++R P ++
Sbjct: 469 LLDGLCKNGKLA----KAMVVF-EYLQRSTMEPDIY 499
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
+E E+++ E + NT N++++ + R +EA+++L + + +E D ++Y ILIS
Sbjct: 440 YELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISE 499
Query: 61 CIKTKKLDVTMPF-NEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIV 116
K ++ + F N+ K GF PDI Y TL+ F KD + L + V
Sbjct: 500 QCKRADMNQALVFLNKMFKV--------GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEV 551
Query: 117 FEMKSCCNLILDRSTFTAMV 136
++ L + T+T+M+
Sbjct: 552 IKL----GLAPTKETYTSMI 567
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 40/202 (19%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
++ + +I A E ++ A V K GL P+ ++Y+ +IS K +
Sbjct: 277 VDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFEL 336
Query: 74 NEQLKDNGQK-------------CSSG----------------GFHPDIFTYATLLMGFR 104
E++ NG K C G + P++ TY ++ G+
Sbjct: 337 LEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYC 396
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
+ L S E++FE L+ + +T+T ++D +G+ Y L +
Sbjct: 397 KEEKL-SRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKA--YEL-------MELM 446
Query: 165 SNPGLWPKPHLYVSMMHELAAR 186
SN G +P Y S++ L R
Sbjct: 447 SNEGFFPNTCTYNSIVDGLCKR 468
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + R D+A Q+L+++ ++ +EPD +S+N LI+A K+ L + E L
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL-ELL 281
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMV 136
+ Q G PD TY TL+ +L + + EM S C D T+ AMV
Sbjct: 282 HEVRQ----AGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECR--PDLWTYNAMV 335
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA--------RVD 188
G + L +F E+V++ G P Y S+++ A RV
Sbjct: 336 SVHGRCGKAQEAEL----MFKELVEK-----GFQPDAVTYNSLLYAFAKEGDVERVERVC 386
Query: 189 YDIVKSPYRR 198
++VK+ +R+
Sbjct: 387 EELVKAGFRK 396
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 33/147 (22%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP----------------FNEQLK 78
A ++L V + GL PD+++YN LISAC + LD + +N +
Sbjct: 277 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 336
Query: 79 DNGQKCSSG-------------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+G +C GF PD TY +LL F D++ + + E+
Sbjct: 337 VHG-RCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVK-AGF 394
Query: 126 ILDRSTFTAMVDALLYSGSIKV-VGLY 151
D T+ M+ G + + +GLY
Sbjct: 395 RKDGITYNTMIHMYGKMGRLDLALGLY 421
>gi|357484175|ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + V+E A R+ EA ++LE VE G D+++YN LI K+ V + F
Sbjct: 277 DVVTVTKVVEILCNAGRVTEAAEVLERVESLGGSLDAVAYNTLIKGFCGVGKVKVGLHFL 336
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+++ G + P++ TY L+ GF ++ L L++ +MK+ + + TF
Sbjct: 337 KQMENKG-------YLPNVDTYNILIYGFCESRMLDLALDLFNDMKT-DGINRNFVTFDT 388
Query: 135 MVDALLYSGSIK 146
M+ L G I+
Sbjct: 389 MIRGLCSEGRIE 400
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +++ +++RI EA ++L +E G P ++YN LISA + L+ M
Sbjct: 138 DKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELK 197
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAKDLQSLLEIVFEMKS 121
Q+ + G K D+FTY +L GF R KD +S + + EM++
Sbjct: 198 NQMVERGIKL-------DVFTYTAMLSGFVRTGKD-ESAMRVFEEMRT 237
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+ PD +YN LI+ C + + E +K S GF PD TY TLL +
Sbjct: 99 GILPDEYTYNTLITCCRRGSLYEEAAAVFEDMK-------SMGFVPDKVTYNTLLDVYGK 151
Query: 106 AKDLQSLLEIVFEMK--SCCNLILDRSTFTAMVDALLYSG 143
++ ++ +E++ EM+ C I+ T+ +++ A G
Sbjct: 152 SRRIKEAIEVLREMEVNGCSPSIV---TYNSLISAYARDG 188
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
++++ ++ + ++I A R EA + + +E+ G +P ++YN++++ K
Sbjct: 24 LHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK--- 80
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ MP+N ++ + + G PD +TY TL+ R + + +MKS +
Sbjct: 81 --MGMPWN-KITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKS-MGFV 136
Query: 127 LDRSTFTAMVDALLYSGSIK 146
D+ T+ ++D S IK
Sbjct: 137 PDKVTYNTLLDVYGKSRRIK 156
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 1 IFEENEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
+ + NEI+N + + N+++ +++ + + ++L E + KG++PD +SYN
Sbjct: 470 VTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNT 529
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I A + ++ +++++ G PD+ TY T + + + +++V
Sbjct: 530 VIFAYCRNGRMKEASHIFSEMRES-------GLIPDVITYNTFVASYAADSMFEEAIDVV 582
Query: 117 -FEMKSCCNLILDRSTFTAMVDA 138
+ +K C +++T+ +++D
Sbjct: 583 CYMIKHGCK--PNQNTYNSVIDG 603
>gi|224103987|ref|XP_002313272.1| predicted protein [Populus trichocarpa]
gi|222849680|gb|EEE87227.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
IFE+ E + K + + N V++ A RIDE S+ E G+ PD +SYN L++
Sbjct: 220 IFEQMENL---KCKPDLVTYNTVLDLLGRAGRIDEMLGEFASMKEAGILPDFISYNTLLN 276
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +LD+ + + N G PD+ TY L+ F + +++ L + EM
Sbjct: 277 QLTKVGRLDLCSVYFRDMVGN-------GIEPDLLTYTALIWSFGQSGNIEESLRLFNEM 329
Query: 120 KS 121
K+
Sbjct: 330 KT 331
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT ++ + +AQR +EA + + +G P+ SY+ILI+ + +K+D
Sbjct: 51 NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
++ D GG P++ TY +LL G L+ +++ M + C D +
Sbjct: 111 NEMID-------GGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGC---PPDGVVY 160
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++D G + A +F E++++ C P Y S++ + + ++ V
Sbjct: 161 NVLIDGFSKKGDMG----EAYRLFEEMLEKGC-----IPTVFTYNSLLSGFSRKGEFGRV 211
Query: 193 KSPYRRM 199
+S ++ M
Sbjct: 212 QSLFKDM 218
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ +V N +I+ + + EAY++ E +EKG P +YN L+S + + V F
Sbjct: 156 DGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLF 215
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ L+ Q C P+IFT+ LL GF D+ + EM+S
Sbjct: 216 KDMLR---QGCV-----PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRS 255
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISA-CIKTKKL 67
R+ N N +++ + + EA+++ LE G PD +SYN LI C K K
Sbjct: 220 RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPH 279
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ E ++ G PDI +Y L+ G+ + L +++ +E+ L
Sbjct: 280 EAQRLLREMIRS--------GVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPK-SGLEP 330
Query: 128 DRSTFTAMVDALLYSGSI 145
D +++ ++D L +G +
Sbjct: 331 DAFSYSTIIDCLCRAGKV 348
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + NAVI+A ++ +D AY + + +PD +YNILI ++ +D +
Sbjct: 216 STRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLV 275
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+Q++ G+ P++FTY L+ GF +AK + ++ MK+
Sbjct: 276 KQME-------GLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKA 315
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N VI+ + +D+A + ++ KG+ P+ +++N LI K ++ +
Sbjct: 461 NVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLL 520
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
L ++G F PDIFT+++++ G AK ++ L EM
Sbjct: 521 VMLLEHG-------FKPDIFTFSSIIDGLCRAKQIEDALGCFSEM 558
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ K NT+ N +I + A + EA + + E G EPD ++Y LI K LD
Sbjct: 387 RDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLD 446
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NL 125
+ M D Q+ G PD FTY+ ++ A L + + EM + C NL
Sbjct: 447 IAM-------DMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNL 499
Query: 126 ILDRSTFTAMV 136
+ TF M+
Sbjct: 500 V----TFNIMI 506
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A + A+++ E V +G P+ +++NI+I+ K + + +
Sbjct: 463 DTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLY 522
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ GF PD TY+ ++ H L+ + EM+ N + D +
Sbjct: 523 RDMQN-------AGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQR-KNWVPDEPVYGL 574
Query: 135 MVDALLYSGSI 145
+VD +G++
Sbjct: 575 LVDLWGKAGNV 585
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 23/145 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++I R+ +A + + KG P+ ++YN LIS K + +D M
Sbjct: 280 NNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL- 338
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ S GF+ DIFTY TL+ G+ L+ L+I C ++ R T
Sbjct: 339 ------FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF------CWMVSRRVTPDI 386
Query: 135 MVDALLYSGSIKVVGLYALCIFGEI 159
+ +L L+ LC+ GEI
Sbjct: 387 ITHCIL---------LHGLCVNGEI 402
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I +++R+++ ++ E +GL D+ +YN LI + KL+V
Sbjct: 848 DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 907
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ D G PDI TY LL + ++ L +V +++ + +D T+
Sbjct: 908 NRMVD-------CGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK-SEMDVDIITYNI 959
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L + +K A C+F + ++ G+ P Y++M+ L +
Sbjct: 960 IIQGLCRTDKLK----EAWCLFRSLTRK-----GVKPDAIAYITMISGLCRKGLQREADK 1010
Query: 195 PYRRMWPDS 203
RRM D
Sbjct: 1011 LCRRMKEDG 1019
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 30 AQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
RI +A+ ++ V+ G EP+ + YN LI K +L++ + +++ G
Sbjct: 154 VNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKK-------G 206
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRSTFTAMVDALLYSGSI 145
D+ TY TLL G ++ ++ + MK N D TFTA++D + G++
Sbjct: 207 LGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN--PDVVTFTALIDVFVKQGNL 262
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N I A+I+ + + EA + E + + + P+ +YN LI+ CI D F
Sbjct: 778 NVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMF 837
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ + S G PD+ TY TL+ GF +K ++ +++ EM + L+ D T+
Sbjct: 838 DLMV--------SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM-TYQGLVGDAFTYN 888
Query: 134 AMVDALLYSGSIKV 147
++ +G + V
Sbjct: 889 TLIHGYCQAGKLNV 902
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + NA+I R+DEA ++L +E KGL+PD ++Y+ +ISA K
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 416
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
N+Q+ + G PD TY++L+ K L S ++F+ L D T+
Sbjct: 417 LNQQMLEK-------GVLPDAITYSSLIRVLCEEKRL-SDAHVLFKNMIKLGLQPDEFTY 468
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVK 161
T+++D G+++ AL + ++VK
Sbjct: 469 TSLIDGHCKEGNVE----RALSLHDKMVK 493
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVTM 71
K N + N+++ +A ++++A ++ E + +GL PD +SYN L+ C +
Sbjct: 217 KPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALS 276
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F E + G PD+ T+ +L+ A +L+ + +V +M+ L ++ T
Sbjct: 277 VFAEMTQK--------GIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRE-RGLQMNEVT 327
Query: 132 FTAMVDALLYSG 143
FTA++D G
Sbjct: 328 FTALIDGFCKKG 339
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
FE N+ + + + I +++I E +R+ +A+ + +++ K GL+PD +Y LI
Sbjct: 415 FELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDG 474
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K ++ + ++++ G PD+ TY+ L+ G + +++F++
Sbjct: 475 HCKEGNVERALSLHDKM-------VKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 526
>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 915
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPF 73
N +V+NA ++A + DEA ++L +EK G++P+++++N IS + +
Sbjct: 396 NDVVLNAAVDACGKGDAPDEALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKAL 455
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ + G K PD F++ + GF A D ++ + EMKS + +D ++
Sbjct: 456 LNEMSERGLK-------PDNFSFNAAMQGFAAAGDPRNTASLSDEMKS-RGIGMDVVSYG 507
Query: 134 AMVDALLYSGSIK 146
V A +G +K
Sbjct: 508 TAVSACAKAGDVK 520
Score = 44.3 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NT+ N+ I A R EA +L E E+GL+PD+ S+N + T
Sbjct: 430 KPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNTAS 489
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++++K S G D+ +Y T + A D++ L+++ EM+ + + +
Sbjct: 490 LSDEMK-------SRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQE-AGVEPNTVVY 541
Query: 133 TAMVDALLYSGSIKV 147
+ +DA +G KV
Sbjct: 542 NSALDACGRAGKPKV 556
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N +++ + +IDEAY +L E GL+P+++ +N LISA K ++ +
Sbjct: 415 KPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 474
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ G K PD++T+ +L+ G +++ L ++ +M S ++ + T+
Sbjct: 475 IFREMPRKGCK-------PDVYTFNSLISGLCEVDEIKHALWLLRDMIS-EGVVANTVTY 526
Query: 133 TAMVDALLYSGSIK 146
+++A L G IK
Sbjct: 527 NTLINAFLRRGEIK 540
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 1 IFEENEIVNREHWK---LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNI 56
I E ++VN ++ L+ I N++I+ A +D+A + E + + GL P S+S NI
Sbjct: 539 IKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNI 598
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
LI+ ++ ++ + F +++ G PDI T+ +L+ G A ++ L +
Sbjct: 599 LINGLCRSGMVEEAVEFQKEMVLRGST-------PDIVTFNSLINGLCRAGRIEDGLTMF 651
Query: 117 FEMKS 121
++++
Sbjct: 652 RKLQA 656
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
++R H K + N +I A A + EA ++ E + E G EPD ++Y LI K
Sbjct: 386 MSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGY 445
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
LD+ M ++++ G PD FTY+ ++ L + ++ EM
Sbjct: 446 LDIAMDLYGRMQEV-------GLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEM 491
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T +A++ + ++ AY++ E +E G P+ ++YNI+I+ K + + +
Sbjct: 464 DTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLY 523
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ ++ GF PD TY+ ++ H L + EM+ + D +
Sbjct: 524 KDMQ-------VAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRR--DWAPDEPVYGL 574
Query: 135 MVDALLYSGSI-KVVGLY 151
+VD +G++ K +G Y
Sbjct: 575 LVDLWGKAGNVDKALGWY 592
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 49/228 (21%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
++ + L+T N +I + ++DEA+ + S+ G+E D ++YNILI +K
Sbjct: 290 KVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKE 349
Query: 65 KKL----DV------------TMPFN------------EQLKDNGQKCSSGGFHPDIFTY 96
D+ T+ +N E+ + S G PD+ T+
Sbjct: 350 GNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTF 409
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCC--NLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
+TL+ G+ A + LE+ EM C L+ D T+ A++ G + A
Sbjct: 410 STLIKGYCKAGRVDDGLELFSEM---CQRGLVADTITYNALIHGFCKVGDLN----GAQD 462
Query: 155 IFGEIVKR-VCSN--------PGLWPKPHLY--VSMMHELAARVDYDI 191
IF E+V VC + GL K L ++M+ +L VD+++
Sbjct: 463 IFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQKSVDHEL 510
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 10 REHWKLN----TIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
RE + N TI +++I+ + R+++A + + V KG PD ++ N LI C +
Sbjct: 174 REMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRA 233
Query: 65 KKLDVTMPFNE-----QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K+ + F + +D Q+ S G PDI T TLL G L+ LE+ F++
Sbjct: 234 KR-HLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEM-FKV 291
Query: 120 KSCCNLILDRSTFTAMVDAL 139
+ LD +T +++ +
Sbjct: 292 FQKSKMDLDTATCNIIINGM 311
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ ID+A ++ E + KGL P+S+++ LI K ++D+ M +
Sbjct: 216 SVLINGLCKESK----IDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ ++ EM S L D+ T+T +
Sbjct: 272 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM-SMKGLKPDKITYTTL 323
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 324 IDGCCKDGDL 333
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 23/200 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +SYN L++ I+ LD + + G PD++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQPDVY 213
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 214 TYSVLINGLCKESKIDDANELFDEM-LVKGLVPNSVTFTTLIDGHCKNGRVDLA------ 266
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEE 214
EI K++ S L P Y ++++ L + D +K + + S + P+ +
Sbjct: 267 --MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD---LKQAHHLIDEMSMKGLKPD--KI 318
Query: 215 AGHLLMEAALNDGQVDLALD 234
L++ DG +D A +
Sbjct: 319 TYTTLIDGCCKDGDLDTAFE 338
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISA 60
FE + + +E+ +L+ +V A+I RE Q +D + E + GL+PD+ +Y ++I+
Sbjct: 337 FEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINE 396
Query: 61 -CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
C K + E +D G P + TY L+ G
Sbjct: 397 FCKKGDVWKGSKLLKEMQRD--------GHVPSVVTYNVLMNG 431
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 16/143 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
IF+E E+ + N + N +I+ + +R++EA Q+++ + +GL+PD +YN L++
Sbjct: 513 IFDEMEL---QGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLT 569
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK--DLQSLLEIVF 117
+ + ++ D Q +S G PD TY TL++G A +L S L
Sbjct: 570 YFCRAGDI-------KKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTV 622
Query: 118 EMKSCCNLILDRSTFTAMVDALL 140
++K ++L T+ ++ AL
Sbjct: 623 QLKG---MVLAPQTYNPVIKALF 642
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ + +RI+EA +I + +E +G+ + ++YN LI K ++++
Sbjct: 490 NVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLM 549
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFT 133
+Q+ G K PD FTY +LL F A D++ +IV M S C D T+
Sbjct: 550 DQMLMEGLK-------PDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCE--PDSVTYG 600
Query: 134 AMVDALLYSGSIKV 147
++ L +G +++
Sbjct: 601 TLILGLSKAGRVEL 614
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 23 VIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
+IE+ + + DEA +++ +E+ GL+ D+ +YN L++ + KL + N ++
Sbjct: 146 LIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRM--- 202
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
S G PD+ T+ L+ A ++ + ++ EM S L D TFT ++ +
Sbjct: 203 ----VSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGS-YGLSPDEKTFTTLMQGFI 257
Query: 141 YSGSI 145
G++
Sbjct: 258 EEGNM 262
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 99/227 (43%), Gaps = 33/227 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +N ++ + RI+E ++ + +G PD ++N L++ + + +
Sbjct: 280 SNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEIL 339
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + G F PDIFTY +L+ G +++ +EI+ +M ++ D S T
Sbjct: 340 DVMLQEG-------FDPDIFTYNSLIFGLCKLGEVEEAVEILNQM-----ILRDFSPNTV 387
Query: 135 MVDALLYSGSIKVVGLYALCIFGEI-----VKRVCSNPGLWPKPHLYVSMMHELAARVDY 189
+ L+ + LC ++ + RV ++ G+ P + S++ L ++
Sbjct: 388 TYNTLIST----------LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNH 437
Query: 190 DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
+ + M T P+ E ++L+++ + G+++ AL L
Sbjct: 438 RLAMELFEEM---KTKGCHPD--EFTYNMLIDSLCSRGRLEEALSLL 479
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V +G++PD ++NILI A + ++ + E++ S G PD T+ TL+ G
Sbjct: 203 VSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEM-------GSYGLSPDEKTFTTLMQG 255
Query: 103 FRHAKDLQSLLEIVFEM 119
F ++ L I +M
Sbjct: 256 FIEEGNMNGALRIREQM 272
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 36 AYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A ++ E ++ KG PD +YN+LI + +L+ + ++++ +G CS ++
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG--CSR-----NVV 492
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMK 120
TY TL+ GF K ++ EI EM+
Sbjct: 493 TYNTLIDGFCKNKRIEEAEEIFDEME 518
>gi|297794571|ref|XP_002865170.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311005|gb|EFH41429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 468
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ I N +I+ IDEAY + + E G+EPD +YN LIS K L+ V F
Sbjct: 47 DVITYNTLIKGYSRFIGIDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLNRVLQLF 106
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L G PD+++Y TL+ + I+ E L+ T+
Sbjct: 107 DEMLHS--------GLSPDMWSYNTLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYN 158
Query: 134 AMVDALLYSG 143
++DAL SG
Sbjct: 159 ILLDALCKSG 168
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A ++ D A ++ + ++ ++P+ ++YNILI+ K++++ +L+
Sbjct: 158 NILLDALCKSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVNWMLRELR-- 215
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G+ P+ TY T+L + K ++ LE+ +MK D A+V AL+
Sbjct: 216 -----KAGYTPNAVTYTTMLKMYFKTKRIEKGLELFLKMKK-EGYTFDGYANCAVVSALI 269
Query: 141 YSG 143
+G
Sbjct: 270 KTG 272
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 107/227 (47%), Gaps = 29/227 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+ ++ + V++A + ++ EA++I++ +++G+EPD ++Y L+ C++++ + F
Sbjct: 274 DVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF 333
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN--LILDRST 131
+ ++ GF PD+ +Y TL+ G+ + + + EM C I D T
Sbjct: 334 DMMVRK--------GFAPDVISYTTLINGYCKIHKIDKAMYLFEEM---CRKEWIPDTKT 382
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++ L + G ++ A+ +F E+V R G P Y ++ L +
Sbjct: 383 YNTLMYGLCHVGRLQ----DAIALFHEMVAR-----GQMPDLVTYSILLDSLCKNRHLEE 433
Query: 192 VKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238
+ + + ++P++Q +++++ G+++ A D SN
Sbjct: 434 AMALLKAI---EASNLNPDIQ--VYNIIIDGMCRAGELEAARDLFSN 475
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N +N +I + R+ A+ +L + K G +PD ++ LI C++ K + F
Sbjct: 99 NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 158
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ + + GF P++ TY TL+ G + + + ++ M+ N D +T
Sbjct: 159 DKMIDE--------GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQ-GNCQPDVVIYT 209
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
+++D+L + A +F ++V + G+ P Y S++H L ++ V
Sbjct: 210 SIIDSLCKDRQVT----EAFNLFSQMVGQ-----GISPDIFTYTSLVHALCNLCEWKHVT 260
Query: 194 SPYRRM 199
+ +M
Sbjct: 261 TLLNQM 266
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 31 QRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
+ ++EA +L+++E L PD YNI+I + +L E +D SS G
Sbjct: 429 RHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGEL-------EAARDLFSNLSSKGL 481
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
HP ++TY ++ G L ++ EM
Sbjct: 482 HPSVWTYNIMIHGLCKRGLLNEANKLFMEM 511
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE + R+ W +T N ++ R+ +A + E V +G PD ++Y+IL+
Sbjct: 367 LFEE---MCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLD 423
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ K + L+ M + ++ + +PDI Y ++ G A +L++ ++ F
Sbjct: 424 SLCKNRHLEEAMALLKAIE-------ASNLNPDIQVYNIIIDGMCRAGELEAARDL-FSN 475
Query: 120 KSCCNLILDRSTFTAMVDALLYSG 143
S L T+ M+ L G
Sbjct: 476 LSSKGLHPSVWTYNIMIHGLCKRG 499
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
++R H K + N +I A A + EA ++ E + E G EPD ++Y LI K
Sbjct: 386 MSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGY 445
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
LD+ M ++++ G PD FTY+ ++ L + ++ EM
Sbjct: 446 LDIAMDLYGRMQEV-------GLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEM 491
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + ++ + ++ AY++ E +E G P+ ++YNI+I+ K + + +
Sbjct: 464 DTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLY 523
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ ++ GF PD TY+ ++ H L + EM+ + D +
Sbjct: 524 KDMQ-------VAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRR--DWAPDEPVYGL 574
Query: 135 MVDALLYSGSI-KVVGLY 151
+VD +G++ K +G Y
Sbjct: 575 LVDLWGKAGNVDKALGWY 592
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + +R+DEA +L E + K + PD+++Y+ LI K ++ + +++
Sbjct: 294 NIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHH 353
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GQ ++ TY +LL G ++L + + +MK + ++ T+TA++D L
Sbjct: 354 RGQP-------ANLVTYNSLLDGLCKNQNLDKAIALFMKMKER-GIQPNKYTYTALIDGL 405
Query: 140 LYSGSIK 146
G +K
Sbjct: 406 CKGGRLK 412
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 87/183 (47%), Gaps = 26/183 (14%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTK 65
++ ++ K + ++ + +++ + +A QI L V+ G+ PD SYNI+I+ K K
Sbjct: 245 VMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGK 304
Query: 66 KLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK---S 121
++D M E L N PD TY++L+ G + ++L++ EM
Sbjct: 305 RVDEAMNLLREMLHKN--------MIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQ 356
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
NL+ T+ +++D L + ++ A+ +F ++ +R G+ P + Y +++
Sbjct: 357 PANLV----TYNSLLDGLCKNQNLD----KAIALFMKMKER-----GIQPNKYTYTALID 403
Query: 182 ELA 184
L
Sbjct: 404 GLC 406
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 36 AYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A ++L ++E + PD + Y+ +I K K +D ++ ++ G PD+
Sbjct: 134 AIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEM-------NARGIFPDVI 186
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
TY TL+ GF A L ++ EM N+ + T+ ++D L G +K
Sbjct: 187 TYTTLICGFCLAGQLMEAFGLLNEM-ILKNINPNIYTYNTLIDTLCKEGKVK 237
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 44/229 (19%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILIS 59
IFEE + R + + +++I RIDEA Q+ + V KG PD +SYN LI+
Sbjct: 282 IFEE---MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLIN 338
Query: 60 ACIKTKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHP 91
K K+++ M ++ G + S G P
Sbjct: 339 GFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSP 398
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVV-GL 150
DI+TY LL G L+ L ++FE + LD T+T ++ + +G ++ GL
Sbjct: 399 DIWTYNILLGGLCDNGLLEKAL-VIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGL 457
Query: 151 YALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
+ S GL P Y +MM L + V++ Y +M
Sbjct: 458 FC----------SLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKM 496
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 80/153 (52%), Gaps = 19/153 (12%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + + +++ R+ +A +++ VE G PD ++YN +I + KT++++ +
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDAL 210
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILD 128
F K+ G+K G P++ TY L+ G ++ D LL + + K N+I
Sbjct: 211 DF---FKEIGRK----GIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVI-- 261
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
T++A++DA + +G + L A IF E+V+
Sbjct: 262 --TYSALLDAFVKNGKV----LEAKEIFEEMVR 288
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ A IDEA ++LE V GL+PDS SYN L+ K ++D
Sbjct: 517 DVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAY--- 573
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ +K S G P + TY T+L G K E+ M
Sbjct: 574 ----SHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNM 614
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + VI ++D+ Y + LE +++G+ PD ++Y +I K + D
Sbjct: 202 NVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVF 261
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS------CCNLILD 128
+Q+ DNG K P+I TY L+ G+ + ++ ++ EM + CC
Sbjct: 262 QQMIDNGVK-------PNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCC----- 309
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
T+ ++++ L +G + + + G+ G+ P Y M+H A +
Sbjct: 310 --TYGSLLNYLCKNGRCREARFFFDSMIGK---------GIKPSVTTYGIMLHGYATK 356
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILIS 59
F ++ + W+++ IV+N ++ + +R+ EA +L E G PD++SYNIL+
Sbjct: 114 FAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLK 173
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQ-KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K+ + + + D+ C P++ +Y+T++ GF + + E
Sbjct: 174 GLCNEKRAEEALELLHMMADDQVWSCP-----PNVVSYSTVINGFFTEGQVDKPYNLFLE 228
Query: 119 MKSCCNLILDRS------TFTAMVDAL 139
M +DR T+T ++D L
Sbjct: 229 M-------MDRGIPPDVVTYTTVIDGL 248
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N + N A + ID+A I + ++GL PD++SY LI A K ++ D + F
Sbjct: 377 NHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKF 436
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
N+ + + G PDI +++L+ G + + E+ FEM
Sbjct: 437 NQMINE--------GVTPDIVVFSSLVYGLCTVDKWEKVEELFFEM 474
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
++N N ++ ++ +DEA+++ +S+ KGL+ + +++NI+I A +K + + M
Sbjct: 858 QMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMD 917
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ N G PD+ TY + L+ + M+ LD
Sbjct: 918 LFAAIPAN-------GLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEK-SGTPLDSRLL 969
Query: 133 TAMVDALLYSGSIKVVGLY 151
A+V LL G I G Y
Sbjct: 970 NALVRRLLQRGDISRAGAY 988
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
NTI+ N E R+ E ++++S+E G+ PD +SYN LI +D
Sbjct: 486 FNTILCNLCKEG-----RVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKL 540
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS 111
E + S G PD F+Y TLL G+ A + S
Sbjct: 541 LEGM-------VSVGLKPDSFSYNTLLHGYCKAGRIDS 571
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 15/120 (12%)
Query: 28 REAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86
++A+RID+AY + E + KGL PD ++YN ++ +T + + ++ +
Sbjct: 802 KKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM-- 859
Query: 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCN--LILDRSTFTAMVDALLYSG 143
+I+TY +L G + + ++ F+M +S C+ L L+ TF M+ ALL G
Sbjct: 860 -----NIYTYNIILNGLCKS----NCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGG 910
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAY-QILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K ++ N ++ +A RID AY + + G+ P ++YN ++ +TK+
Sbjct: 550 KPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKE 609
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ ++G K DI+TY +L G + + +++ F+ L L+ TF
Sbjct: 610 LYLNMINSGTKW-------DIYTYNIILNGLCKSNCVDEAIKM-FQNLCSKGLQLNIITF 661
Query: 133 TAMVDALLYSG 143
M+ ALL G
Sbjct: 662 NIMIGALLKGG 672
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACI 62
+E+VN+ N NA++ ++ +D A ++ + + KGL P+ ++YNILI
Sbjct: 615 RDEMVNKGLVP-NITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYC 673
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K+ P E L G+ G P I TY++L+ GF D++ ++++ EMK+
Sbjct: 674 KSGS-----P-REALDLRGKMLKEG-ISPSIITYSSLINGFCKQSDVEEAMKLLNEMKA- 725
Query: 123 CNLILDRSTFTAMVDALLYSGSIK 146
N+ +TF+ +V+ + G +K
Sbjct: 726 SNVDQTIATFSKLVEGCIQHGDVK 749
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
ES K P+++ YNI ++ K+ K++ F L S G F PD FTY TL+
Sbjct: 547 ESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGL-------SHGSFTPDNFTYCTLI 599
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
GF A + + EM + L+ + +T+ A+++ L SG
Sbjct: 600 HGFSAAGYVNEAFNLRDEMVN-KGLVPNITTYNALLNGLCKSG 641
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 38/197 (19%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-C---IKTKKLD 68
K+N V N++I + ++ E ++L + K L+PDS SY L+ C + +K +
Sbjct: 204 KMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFN 263
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
V ++ L+ G P + TY TLL G D + L + +L+L
Sbjct: 264 VC---DQMLRK--------GIEPTVVTYNTLLKGLCRFGDYKDALRLW-------HLMLQ 305
Query: 129 RST------FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
R + ++D L G AL ++ +I+ R G+ + + +M++
Sbjct: 306 RGVTPNEVGYCTLLDGLFKMGDFS----RALTLWDDILAR-----GINKSIYAFNTMING 356
Query: 183 LAARVDYDIVKSPYRRM 199
L + D K ++RM
Sbjct: 357 LCKMGEMDGAKETFKRM 373
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 32 RIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+I +A ++L+ +E KGL P +SY LI ++ LD + E++ N G
Sbjct: 206 KISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIIN-------GIE 258
Query: 91 PDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
P++FTY++L+ G H+ LLE++ + N++ T++ +++ L G +
Sbjct: 259 PNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMV----TYSTLINGLCKEGKHRE 314
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207
EI+ R+ GL P +Y ++ L A +Y + M + G I
Sbjct: 315 A--------VEILDRM-RLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEM---ALGGI 362
Query: 208 SPEVQEEAGHLLMEAALNDG 227
SP H+ M + G
Sbjct: 363 SPNRASWTFHVKMHNMVVQG 382
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ +A + EA +I + +E G+ +S++YN LI K+++++
Sbjct: 469 SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFT 133
+Q+ GQK PD +TY +LL F D++ +IV M S C D T+
Sbjct: 529 DQMIMEGQK-------PDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE--PDIVTYG 579
Query: 134 AMVDALLYSGSIKV 147
++ L +G ++V
Sbjct: 580 TLISGLCKAGRVEV 593
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 15/109 (13%)
Query: 1 IFEENEI--VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNIL 57
IF+E E+ V+R N++ N +I+ +++R+++A Q+++ + +G +PD +YN L
Sbjct: 492 IFDEMEVHGVSR-----NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
++ + + ++ D Q +S G PDI TY TL+ G A
Sbjct: 547 LTHFCRGGDI-------KKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I + +++EA ++ + KG+ PD ++N LI T+ V M
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSCCNLILDRSTF 132
E+++ S G PD FTY L+ L L ++ E+ C ++ T+
Sbjct: 424 EEMR-------SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI---TY 473
Query: 133 TAMVDAL 139
++D
Sbjct: 474 NTLIDGF 480
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 36 AYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A ++ E + KG EPD +YN+LI + KLD + +Q++ +G C+ +
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARS-----VI 471
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
TY TL+ GF A + EI EM+ + + T+ ++D L S ++
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEME-VHGVSRNSVTYNTLIDGLCKSRRVE 522
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + N +I+A A ++ A +LE + GL PD ++ ++ I+ LD +
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
EQ+ + G CS ++ + GF ++ L + EM + D+ TF
Sbjct: 246 IREQMVEFG--CSWSNVSVNVIVH-----GFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 133 TAMVDALLYSGSIK 146
+V+ L +G +K
Sbjct: 299 NTLVNGLCKAGHVK 312
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/225 (17%), Positives = 98/225 (43%), Gaps = 28/225 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE--SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ + +N ++ + R+++A ++ S + G PD ++N L++ K + +
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRST 131
+ + G + PD++TY +++ G +++ +E++ +M + C + T
Sbjct: 318 MDVMLQEG-------YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP---NTVT 367
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++ L ++ A RV ++ G+ P + S++ L ++ +
Sbjct: 368 YNTLISTLCKENQVEEATELA---------RVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418
Query: 192 VKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
+ M S G E E ++L+++ + G++D AL+ L
Sbjct: 419 AMELFEEMR--SKGC---EPDEFTYNMLIDSLCSKGKLDEALNML 458
>gi|255078088|ref|XP_002502624.1| predicted protein [Micromonas sp. RCC299]
gi|226517889|gb|ACO63882.1| predicted protein [Micromonas sp. RCC299]
Length = 1025
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 29/179 (16%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKT-KKLDVTMPFNEQLKDNGQKCSSGGFH 90
++ A ++LES+ G+E ++YN LI AC+K + + M L + G
Sbjct: 565 LERARRVLESMRAAGIETTVVTYNTLIDACVKNGEPTEAAMGVLSAL-------VAAGHR 617
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
PD+ TY TLL F D+ + ++ EM+S D + +VDAL G
Sbjct: 618 PDVVTYTTLLKHFGEKGDVAAARWLMGEMRSDPGTSPDATAINCLVDALCRRG------- 670
Query: 151 YALCIFGEIVKRVCS--NPGLWPKPHLYVSMMHELA-------ARVDYDIVKSPYRRMW 200
+F E + V + GL P + Y + M A AR YD + +W
Sbjct: 671 ----LFAEAHREVAAMVADGLAPDLNTYGAFMDGFARVGDVHGARALYDAMTGRSSNVW 725
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I+A + + EA ++ + +++ ++PD +YN L++ +LD
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMF 388
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + S PD+ TY TL+ GF +K ++ E+ EM S L+ D T+T
Sbjct: 389 EFM-------VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM-SHRGLVGDTVTYTT 440
Query: 135 MVDALLYSG 143
++ L + G
Sbjct: 441 LIQGLFHDG 449
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
E + + + KL+ + +IE +A ++D+ + + S+ KG++P+ ++YN +IS
Sbjct: 490 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 549
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ L +++K++G +SG TY TL+ D + E++ EM+
Sbjct: 550 LCSKRLLQEAYALLKKMKEDGPLPNSG-------TYNTLIRAHLRDGDKAASAELIREMR 602
Query: 121 SCCNLILDRSTFTAMVDALLYSGSI 145
S C + D ST +V +L+ G +
Sbjct: 603 S-CRFVGDASTI-GLVANMLHDGRL 625
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 30/154 (19%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLK 78
N+++ R+D+A Q+ E V K PD ++YN LI K+K++ D T F E
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 428
Query: 79 -----------------------DNGQKC----SSGGFHPDIFTYATLLMGFRHAKDLQS 111
DN QK S G PDI TY+ LL G + L+
Sbjct: 429 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 488
Query: 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
LE VF+ + LD +T M++ + +G +
Sbjct: 489 ALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 521
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 39/213 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + +DE I E ++ +PD ++YN LI+ K +++ F
Sbjct: 289 DIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFL 348
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
++K NG K C G P+ FTY +L+ A
Sbjct: 349 HEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKA 408
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
+L L++V E+ + L+ T+TA++D L G +K E V R N
Sbjct: 409 GNLAEALKLVEEILQ-AGIKLNVVTYTALLDGLCEEGRMKE---------AEEVFRAMLN 458
Query: 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
G+ P Y +++H + + K + M
Sbjct: 459 AGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 491
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
KLN + A+++ E R+ EA ++ + + G+ P+ +Y L+ IK K+++
Sbjct: 427 KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYA-- 484
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ LK+ +KC PD+ Y T+L G + L+ ++ E+K + + +
Sbjct: 485 -KDILKEMKEKC----IKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE-SGINTNAVIY 538
Query: 133 TAMVDALLYSG 143
T ++DA SG
Sbjct: 539 TTLMDAYFKSG 549
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G PD ++YN LI K LD + EQ+KD C PD+ TY L+ F
Sbjct: 283 EAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKD--ADCD-----PDVITYNALINCF 335
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ + E + EMK+ L + T++ +DA G ++
Sbjct: 336 CKFERMPKAFEFLHEMKA-NGLKPNVVTYSTFIDAFCKEGMLQ 377
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +N++++ +A+R DEA +L+ +E+ G P ++YN LIS+ +K L+
Sbjct: 278 FEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEAT 337
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E+++ G PD+ TY TL+ G A + + + EM
Sbjct: 338 QLKEEMEVK-------GIEPDVITYTTLVSGLDRAGKIDAAIGTYNEM 378
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 41/199 (20%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM-PF 73
+ + N++I + + ++EA Q+ E +E KG+EPD ++Y L+S + K+D + +
Sbjct: 316 SVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTY 375
Query: 74 NEQLKDNGQK---CS-------------------------SGGFHPDIFTYATLLMGFRH 105
NE L+ NG K C+ S GF PD+ T+ TLL F
Sbjct: 376 NEMLR-NGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQ 434
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
L + + VF+ + +R T+ +++ S GL+ + EI KR+
Sbjct: 435 -NGLDTEVSGVFKEMKKSGYVPERDTYVSLIS------SYSRCGLFDQAM--EIYKRMI- 484
Query: 166 NPGLWPKPHLYVSMMHELA 184
G+ P Y +++ LA
Sbjct: 485 EAGIHPDISTYNAVLSALA 503
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ N +I R EA ++ + + G EPD ++ N L+ K ++ D +
Sbjct: 245 LDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGV 304
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++++ GG P + TY +L+ + L+ ++ EM+ + D T+T
Sbjct: 305 LKEMEQ-------GGCPPSVVTYNSLISSYVKDGLLEEATQLKEEME-VKGIEPDVITYT 356
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
+V L +G I A+ + E+++ C
Sbjct: 357 TLVSGLDRAGKIDA----AIGTYNEMLRNGC 383
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 17/186 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N+++ A E+ + DEA E GL P+ +YNILI + K+ D + +
Sbjct: 118 NSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWE 177
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G F PD+F+Y TL+ + L++ EM + D + + ++D
Sbjct: 178 QG-------FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE-RGVTPDVACYNILIDGF 229
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
G I L A EI +R+ P ++P Y M++ L +D + RM
Sbjct: 230 FKKGDI----LNA----SEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 281
Query: 200 WPDSTG 205
+ G
Sbjct: 282 KKNERG 287
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N +I +A+R EAY ++ E + KG +P+ ++Y++L++ + KKLD+ + Q
Sbjct: 500 VTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQ 559
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ GF PD+ + ++ G + ++ L++ EMK
Sbjct: 560 ALEK-------GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V N ++ A RI+E ++ + +EK +SYNILI + K+D + E
Sbjct: 324 DVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWE 383
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
L + + C + D TY L+ G L L I+ E ++ LD +++M
Sbjct: 384 LLPE--KDCCA-----DSMTYGVLVHGLCKNGYLNKALSILEEAEN-GRGDLDTFAYSSM 435
Query: 136 VDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175
++ L G + +V G + ++ K C P PH+
Sbjct: 436 INGLCREGRLDEVAG-----VLDQMTKHGCK-----PNPHV 466
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N V NAVI A ++++A + + V KG P ++YN LI+ K ++
Sbjct: 461 KPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYA 520
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
+++ G K P++ TY+ L+ G K L L +
Sbjct: 521 LVKEMLHKGWK-------PNMITYSLLMNGLCQGKKLDMALNL 556
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T +++I R+DE +L+ + K G +P+ N +I+ ++ KL+
Sbjct: 427 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLE----- 481
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ L+ G S G F P + TY TL+ G A+ +V EM
Sbjct: 482 -DALRFFGNMVSKGCF-PTVVTYNTLINGLSKAERFSEAYALVKEM 525
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 32/134 (23%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N +I+ + I A +I E + KG + P+ SYN++I+ K K D + ++K
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282
Query: 79 DN--GQK-----------CSSG---------------GFHPDIFTYATLLMGFRHAKDLQ 110
N GQ C SG G PD+ Y T+L G+ A ++
Sbjct: 283 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 342
Query: 111 SLLEI--VFEMKSC 122
LE+ V E + C
Sbjct: 343 ECLELWKVMEKEGC 356
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA++ +A +++ A+ ++ES V+KG+ PD ++Y++L+ A K ++D +
Sbjct: 257 NVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 316
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF----RHAKDLQSLLEIVFEMKSCCNLILDRS 130
+ +S G P++ T+ +++ G R + Q L++ M L+ D+
Sbjct: 317 HGM-------ASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRM-----LVPDKV 364
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
TF ++ +G+ + A +F E+V +
Sbjct: 365 TFNILIAGACKAGNFE----QASALFEEMVAK 392
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++ +++ A A R D+A Q++ ++ G +PD+++YNIL+ K+ K + + E
Sbjct: 468 SMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 527
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
++ G + PD FT+A G + +L +E++
Sbjct: 528 EMVGKGHQ-------PDSFTFAACFGGLHRSGNLAGTMELL 561
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N V+++ A A +I E G+ P ++YN +I+ K+ +L M E+L
Sbjct: 49 NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 108
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
G HPD+ TY TL+ A DL+ + M S + + T++ +++
Sbjct: 109 KRGH-------HPDVVTYNTLIDSLCKAGDLEEARRLHGGMSS-RGCVPNVVTYSVLING 160
Query: 139 LLYSGSI 145
L G I
Sbjct: 161 LCKVGRI 167
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T+ + +I+ + + DEA + + G P+ ++YN L++ K K++ E
Sbjct: 224 DTVTFSTLIDGLCKCGQTDEACND-DMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIE 282
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFT 133
+ D G PD+ TY+ L+ F A + LE++ M S C ++ TF
Sbjct: 283 SMVDK-------GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV---TFN 332
Query: 134 AMVDALLYS 142
+++D L S
Sbjct: 333 SIIDGLCKS 341
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+FEE + ++ + + + A+I+ +A +++ A IL+ + G+ P+ ++YN+L+
Sbjct: 385 LFEE---MVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVH 441
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K+ +++ F E++ S G P+ TY +L+ A L++V ++
Sbjct: 442 GLCKSGRIEEPCEFLEEM-------VSSGCVPESMTYGSLVYALCRASRTDDALQLVSKL 494
Query: 120 KSCCNLILDRSTFTAMVDALLYSG 143
KS D T+ +VD L SG
Sbjct: 495 KS-FGWDPDTVTYNILVDGLWKSG 517
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD 68
R+ + N +I ++ + ++ E V++G PD ++YN LI + K L+
Sbjct: 74 RDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLE 133
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
E + +G SS G P++ TY+ L+ G + E++ EM + C+++
Sbjct: 134 ------EARRLHGGM-SSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLP 186
Query: 128 DRSTFTAMVDAL 139
+ T+ + +D L
Sbjct: 187 NIITYNSFLDGL 198
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ + VI+ + RIDEA+++ ES+ K +PDS+ +N +++ K ++D ++
Sbjct: 416 DAVTFTTVIQKLCKESRIDEAHELFESIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHD 475
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ D+G C+ P + TY L+ GF L + EM
Sbjct: 476 RMLDSG--CA-----PTLATYTALVTGFCRTGRYSDALIMYHEM 512
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N V+ +I A+++ + + P+ +SY I+I K++K+D + +Q+ D
Sbjct: 175 NIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDK 234
Query: 81 GQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
+PD+ TY L+ G R K+ L E K C ++ T+ M+D
Sbjct: 235 -------AIYPDVVTYGALIDGLGKQRRVKEAYDLFEEA-RAKGCHPTVV---TYNTMID 283
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
L G I+ AL ++ ++V+ P L P Y ++++ L
Sbjct: 284 GLCKCGRIE----NALTLYDDMVR----EPHLKPDMFTYSALINGL 321
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+ + A+I+ + +R+ EAY + E KG P ++YN +I K +++ + +
Sbjct: 239 DVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLY 298
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTF 132
++ +++ K PD+FTY+ L+ G + + E+ EM + C+ D T+
Sbjct: 299 DDMVREPHLK-------PDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCS--PDVVTY 349
Query: 133 TAMVDALLYSG 143
++D L SG
Sbjct: 350 NTLLDGLCKSG 360
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
+++V H K + +A+I + R ++AY++ E ++ G PD ++YN L+ K
Sbjct: 299 DDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCK 358
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ D M ++ G C P++ TY L+ F L +++ EM+
Sbjct: 359 SGCEDKAMEIFRKM-GVGNVCD-----PNVITYTVLIDRFCKVDRLGDAVKLAKEMEG-R 411
Query: 124 NLILDRSTFTAMVDAL 139
+L+ D TFT ++ L
Sbjct: 412 SLLPDAVTFTTVIQKL 427
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 28/151 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFN 74
N N ++ +A+R+++A+ +S K + EPD +SYN L++ K + +
Sbjct: 101 NRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALF 160
Query: 75 EQLKDNGQK------------CS--------------SGGFHPDIFTYATLLMGFRHAKD 108
++KD+G CS SG F P++ +Y ++ G ++
Sbjct: 161 GEMKDSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRK 220
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ + + +M + D T+ A++D L
Sbjct: 221 VDKAITLFKQMVDKA-IYPDVVTYGALIDGL 250
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 39/213 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + +DE I E ++ +PD ++YN LI+ K +++ F
Sbjct: 90 DIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFL 149
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
++K NG K C G P+ FTY +L+ A
Sbjct: 150 HEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKA 209
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
+L L++V E+ + L+ T+TA++D L G +K E V R N
Sbjct: 210 GNLAEALKLVEEILQ-AGIKLNVVTYTALLDGLCEEGRMKE---------AEEVFRAMLN 259
Query: 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
G+ P Y +++H + + K + M
Sbjct: 260 AGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 292
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
KLN + A+++ E R+ EA ++ + + G+ P+ +Y L+ IK K+++
Sbjct: 228 KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYA-- 285
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ LK+ +KC PD+ Y T+L G + L+ ++ E+K + + +
Sbjct: 286 -KDILKEMKEKC----IKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE-SGINTNAVIY 339
Query: 133 TAMVDALLYSGS 144
T ++DA SG
Sbjct: 340 TTLMDAYFKSGQ 351
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G PD ++YN LI K LD + EQ+KD C PD+ TY L+ F
Sbjct: 84 EAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKD--ADCD-----PDVITYNALINCF 136
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ + E + EMK+ L + T++ +DA G ++
Sbjct: 137 CKFERMPKAFEFLHEMKA-NGLKPNVVTYSTFIDAFCKEGMLQ 178
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I+A + + EA ++ + +++ ++PD +YN L++ +LD
Sbjct: 291 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMF 350
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + S PD+ TY TL+ GF +K ++ E+ EM S L+ D T+T
Sbjct: 351 EFM-------VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM-SHRGLVGDTVTYTT 402
Query: 135 MVDALLYSG 143
++ L + G
Sbjct: 403 LIQGLFHDG 411
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
E + + + KL+ + +IE +A ++D+ + + S+ KG++P+ ++YN +IS
Sbjct: 452 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 511
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ L +++K++G +SG TY TL+ D + E++ EM+
Sbjct: 512 LCSKRLLQEAYALLKKMKEDGPLPNSG-------TYNTLIRAHLRDGDKAASAELIREMR 564
Query: 121 SCCNLILDRSTFTAMVDALLYSGSI 145
S C + D ST +V +L+ G +
Sbjct: 565 S-CRFVGDASTI-GLVANMLHDGRL 587
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 30/154 (19%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLK 78
N+++ R+D+A Q+ E V K PD ++YN LI K+K++ D T F E
Sbjct: 331 NSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 390
Query: 79 -----------------------DNGQKC----SSGGFHPDIFTYATLLMGFRHAKDLQS 111
DN QK S G PDI TY+ LL G + L+
Sbjct: 391 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 450
Query: 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
LE VF+ + LD +T M++ + +G +
Sbjct: 451 ALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 483
>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 19/146 (13%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G+EP L + LI + KLD F ++K NG C PD+ Y ++ G+
Sbjct: 345 ETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNG--CM-----PDVVAYTVMITGY 397
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
A++L+ E+ EM S L+ + T+ +M+ L +G A +F E+ ++
Sbjct: 398 VVARELEKAQEMFEEMLS-KELVPNVFTYNSMIRGLCMAGKFDE----ACSMFKEMERKG 452
Query: 164 CSNPGLWPKPHLYVSMMHEL--AARV 187
CS P +Y++++ L A RV
Sbjct: 453 CS-----PNSVVYITLVSCLRNAGRV 473
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 23/145 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++I R+ +A + + KG P+ ++YN LIS K + +D M
Sbjct: 280 NNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLF 339
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ S GF+ DIFTY TL+ G+ L+ L+I C ++ R T
Sbjct: 340 -------QRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF------CWMVSRRVTPDI 386
Query: 135 MVDALLYSGSIKVVGLYALCIFGEI 159
+ +L L+ LC+ GEI
Sbjct: 387 ITHCIL---------LHGLCVNGEI 402
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 31 QRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
RI +A+ ++ V+ G EP+ + YN LI K +L++ + +++ G
Sbjct: 155 NRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKK-------GL 207
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRSTFTAMVDALLYSGSI 145
D+ TY TLL G ++ ++ + MK N D TFTA++D + G++
Sbjct: 208 GADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN--PDVVTFTALIDVFVKQGNL 262
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E ++ GL P+S+S+ LI K ++D+ M +
Sbjct: 210 SVLINGLCKESK----LDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ +++ EM S L D+ T+T +
Sbjct: 266 QM-------LSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEM-SMKGLKPDKITYTTL 317
Query: 136 VDALLYSGSIKVVGLY 151
+D G ++ Y
Sbjct: 318 IDGSCKEGDLETAFEY 333
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N ++ + + I A + +++ K GL P +S+N L++ IK L+ +LK
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGF----RLK 194
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ Q + G PD++TY+ L+ G L E+ EM L+ + +FT ++D
Sbjct: 195 NAMQ---ASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLD-NGLVPNSVSFTTLIDG 250
Query: 139 LLYSGSI 145
G +
Sbjct: 251 HCKDGRV 257
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 89/190 (46%), Gaps = 22/190 (11%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T+ ++I+ + ID A ++L ++ KGL+ D +Y LI K + +
Sbjct: 424 TVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLN 483
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+L+ G P+ F Y +++ GF++ +++ +++ +M + + D T+T++
Sbjct: 484 ELR-------GAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVN-EGIPCDLKTYTSL 535
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+D LL SG + LYA I E++ + G+ P + +++ L + ++
Sbjct: 536 IDGLLKSGRL----LYASDIHTEMLSK-----GILPDDRAHTVLINGLCNKGQFE----N 582
Query: 196 YRRMWPDSTG 205
R++ D G
Sbjct: 583 ARKILEDMNG 592
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 25/232 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N ++ + +++EA + E + KG+ P+ +SYN +I + ++
Sbjct: 248 NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVY 307
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ DN GF P+ T+ L+ G+ D+++ I MK N++ +T
Sbjct: 308 KEMLDN-------GFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKD-ANILPTDTTLGI 359
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L +G +F + V + G P Y +++ + ++ +
Sbjct: 360 IIKGLCKAGR----SFEGRDLFNKFVSQ-----GFVPTCMPYNTIIDGFIKEGNINLASN 410
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
YR M I+P L++ +DLAL KL N + R KG+
Sbjct: 411 VYREMCEVG---ITPSTVTYTS--LIDGFCKGNNIDLAL-KLLNDMKR-KGL 455
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+F+E + + + + I +I+ + A Q+L+ +E KG +PD ++YN +I
Sbjct: 163 LFDE---IGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVID 219
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ K ++ + M F ++ D G P++ TY+++L GF + L + +M
Sbjct: 220 SLCKDRRANEAMYFFSEMVDQ-------GIPPNVVTYSSILHGFCNLGQLNEATSLFKQM 272
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
N++ + TFT +VD L G I L A +F + + G+ P + Y ++
Sbjct: 273 IG-RNVMPNTVTFTILVDGLCKEGMI----LEARRVFEMMTEN-----GVEPDAYTYSAL 322
Query: 180 M 180
M
Sbjct: 323 M 323
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+A+++ ++DEA ++ + V KG P YNILI+ K+++L+ ++ D
Sbjct: 320 SALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYD 379
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
PD TY+TL+ GF A Q ++ EM S L+ D T++ ++D L
Sbjct: 380 R-------DLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCS-YGLLPDSITYSILLDGL 431
Query: 140 LYSGSI 145
G +
Sbjct: 432 CKHGHL 437
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 27/233 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
NT+ +++ + I EA ++ E + E G+EPD+ +Y+ L+ C++++ + F
Sbjct: 280 NTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLF 339
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ + GF P + Y L+ G ++ L ++ EM +L D T++
Sbjct: 340 DIMVGK--------GFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYD-RDLTPDTVTYS 390
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
++ +G +V ++ K +CS GL P Y ++ L D
Sbjct: 391 TLMQGFCQAGRPQVA--------QKLFKEMCSY-GLLPDSITYSILLDGLCKHGHLD--- 438
Query: 194 SPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
+R + I P + ++L++ N G+++ A + SN KGI
Sbjct: 439 EAFRLLKAMQESKIEPHIC--IYNILIQGMCNFGKLEAARELFSNLFV--KGI 487
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 26/187 (13%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPFN 74
TI++N + ++R+ + A+ L + K GL+P +++ L++ C K K +D F+
Sbjct: 108 TILINCLCHSNRD--HVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFD 165
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
E K GF P + TY T++ G + L+++ +M K C D +
Sbjct: 166 EIGKM--------GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGC---KPDVVAY 214
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++D+L A+ F E+V + G+ P Y S++H +
Sbjct: 215 NTVIDSLCKDRRAN----EAMYFFSEMVDQ-----GIPPNVVTYSSILHGFCNLGQLNEA 265
Query: 193 KSPYRRM 199
S +++M
Sbjct: 266 TSLFKQM 272
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 103/224 (45%), Gaps = 29/224 (12%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
++ + I + +I + A Q+L+ +E KG +P+ + Y+ +I + K K + M
Sbjct: 78 YEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAM 137
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILD 128
F ++ + G P++ TY+++L GF + + SL + + E N++ D
Sbjct: 138 EFLSEMVNRG-------ISPNVVTYSSILHGFCNLGRSNEATSLFKQMVER----NVMPD 186
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
TF +VD L G I L A C+F ++++ G+ P + Y ++M ++
Sbjct: 187 TVTFNILVDGLSKEGMI----LEAQCVFETMIEK-----GVEPNVNTYNALMDGYCSQSQ 237
Query: 189 YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLA 232
D + + M +P V+ + ++L++ G++D A
Sbjct: 238 MDEAQKLFNIMVRKGC---APSVR--SYNILIKGHCKSGRIDEA 276
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N NA+++ ++DEA ++ V KG P SYNILI K+ ++D
Sbjct: 221 NVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRID------ 274
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
+ K + S PD TY+TL+ GF +D Q LLE EM+S L+ D T
Sbjct: 275 -EAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLE---EMRS-YGLLPDLMT 329
Query: 132 FTAMVDALLYSGSI 145
++ ++D L G +
Sbjct: 330 YSIVLDGLCKQGHL 343
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+ ++ RIDEA +L E K L PD+++Y+ L+ + + E+++
Sbjct: 261 NILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMR- 319
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
S G PD+ TY+ +L G L E++ M+
Sbjct: 320 ------SYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQ 354
>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like [Cucumis sativus]
Length = 572
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 23 VIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
+IE A +ID+A +I + + E G PD +YN +IS I D + + E++ N
Sbjct: 323 LIECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQCLTYYERMLSN- 381
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+C PD+ TY+ L+ GF AK + LE+ EM
Sbjct: 382 -RC-----EPDMNTYSNLITGFLKAKKVADALEMFDEM 413
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 26/195 (13%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
N + N VI R E Q+L+++E G PD L++ LI + ++D +
Sbjct: 280 FNVMTYNIVIGGWSRYGRHGEVEQMLKAMELDGFSPDCLTHTYLIECLGRANQIDDAVKI 339
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-CNLILDRSTF 132
+++ +NG C+ PD+ Y ++ F D L M S C D +T+
Sbjct: 340 FDKMDENG--CT-----PDVDAYNAMISNFICIGDFDQCLTYYERMLSNRCE--PDMNTY 390
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL----------WPKPHLYVSMMHE 182
+ ++ L + + AL +F E+V R+ G + PH + ++++
Sbjct: 391 SNLITGFLKAKKVAD----ALEMFDEMVARIIPTTGAITSFIQLSCSYGPPHAAM-LIYK 445
Query: 183 LAARVDYDIVKSPYR 197
A +V I K+ Y+
Sbjct: 446 KARKVGCRISKNAYK 460
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ +A + EA Q+L+ ++ G+ PD+++YN L++ K ++ D +
Sbjct: 356 DVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGIL 415
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + G PD TY TL+ G L E++ EM ++ +T+
Sbjct: 416 KNM-------IKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNT 468
Query: 135 MVDALLYSGSIK 146
++D L G +K
Sbjct: 469 IIDRLCKEGCLK 480
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + Q +D A ++ E V G PD ++Y+IL K ++D +++
Sbjct: 84 NTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSG 143
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
NG C+ P++ TY TL+ G A + E++ + S + D T+T +VD L
Sbjct: 144 NG--CT-----PNLVTYNTLIDGLCKASKTEKAYELLETLVS-SGFVPDVVTYTIIVDGL 195
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA--ARVD 188
G + AL + ++KR C+ P Y ++M L RVD
Sbjct: 196 CKEGRLD----KALKMVEGMLKRGCT-----PSVITYTALMEGLCRTGRVD 237
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N++++ +A + + A+ +L + E+ P +YN LIS K + +D
Sbjct: 44 DTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLV 103
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NLILDRST 131
++ S GF PD+ TY+ L G + E+V EM C NL+ T
Sbjct: 104 DEF-------VSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLV----T 152
Query: 132 FTAMVDAL 139
+ ++D L
Sbjct: 153 YNTLIDGL 160
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ +A + ++AY++LE+ V G PD ++Y I++ K +LD +
Sbjct: 149 NLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMV 208
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + G C+ P + TY L+ G + I EM S
Sbjct: 209 EGMLKRG--CT-----PSVITYTALMEGLCRTGRVDEAHHIFKEMVS 248
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
E+V + + + N +I+A + +R+DEA +LE V++G P ++YN++I+ K
Sbjct: 555 EMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKL 614
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K+D +++ G SS +Y L+ G + L+++ EM S
Sbjct: 615 DKVDKAWELFDEMAVRGIVASS-------VSYTVLIYGLCGQGRGKEALQVLEEMAS 664
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA+++ + R+DE + E + +G P+ +YNI++ K K+D PF E +
Sbjct: 289 VYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM 348
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G PD+ +Y ++ G A + +++ +M
Sbjct: 349 H-------SAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQM 383
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I A ++ +A +LE + EKGL PD +SY+ ++S ++ +D +
Sbjct: 414 SVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVK 473
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K + G PD TY++L+ GF + + ++ EM L D T+TA
Sbjct: 474 -------RKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLR-VGLPPDEFTYTA 525
Query: 135 MVDALLYSGSIK 146
+++A G ++
Sbjct: 526 LINAYCMEGDLQ 537
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N +++ + ++EAY++L E ++ G P ++YN LI+ CI K +D
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAV- 437
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
L+D +K G PD+ +Y+T+L GF + D+ L + +M
Sbjct: 438 ---LEDMKEK----GLTPDVVSYSTVLSGFCRSYDVDEALRVKRKM 476
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 33 IDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+DEA ++ V KG++PD+++Y+ LI C + + + F+E L+ G
Sbjct: 466 VDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLR--------VGLP 517
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
PD FTY L+ + DLQ +++ EM ++ D T++ +++ L
Sbjct: 518 PDEFTYTALINAYCMEGDLQKAIQLHNEMVE-KGVLPDVVTYSVLINGL 565
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 21 NAVIEAS-REAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
NAV++A+ R + I A + E ++ + P+ +YNILI LDV + F ++++
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRME 232
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
G C P++ TY TL+ G+ + + E++ M
Sbjct: 233 KKG--CL-----PNVVTYNTLIDGYCKLRKIDDGFELLRSM 266
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP-FNE 75
I++N + +A R ++ D ++ V++G P ++YN +I +K ++ + + E
Sbjct: 542 NIIINGLCKAGRTSESQDRLKKL---VQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTE 598
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
K G P++FTY L+ GF + ++ L+++ EMK+ + LD + + A+
Sbjct: 599 MCKI--------GVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKN-KGIELDVTVYCAL 649
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+D G + + A + E+ GL P +Y SM+ + +
Sbjct: 650 IDGFCRKGDM----VNASQLLSEL-----QEVGLSPNKVVYSSMISGFRKLQNMEAALHL 700
Query: 196 YRRM 199
++RM
Sbjct: 701 HKRM 704
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ--LKDNGQKCSSGGFHPDIFTYAT 98
E + KG+ PD ++Y++LI +L+ N Q L+D +KC + P +F Y T
Sbjct: 738 EMLAKGIMPDLITYSVLIHGLCNKGQLE-----NAQKILEDMDRKCMT----PTVFIYNT 788
Query: 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
L+ G +LQ + EM L+ D +T+ +V+ + G++
Sbjct: 789 LITGHFKEGNLQEAFRLHNEMLD-KGLVPDDTTYDILVNGKVKDGNL 834
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N +V +++ + +D A ++ + + E G+ P++++Y ++I C K +D
Sbjct: 327 MNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEI 386
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
Q+K+ P +F +L+ G+ A+ + ++ E +C
Sbjct: 387 YNQMKNK-------DISPTVFNVNSLIRGYLKARSPEEASKLFDEAVAC 428
>gi|224141275|ref|XP_002324000.1| predicted protein [Populus trichocarpa]
gi|222867002|gb|EEF04133.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N+++ A +++++ +E +ILE + ++G+ P+ ++YNIL+ +K + +
Sbjct: 192 NLFIYNSLLSAVKQSEQYEETEKILERMTQEGVAPNVVTYNILMVIYVKQGQAKKALDVL 251
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E+++ NG F P +Y++ L+ +R +D L+ E+K
Sbjct: 252 EEMRRNG-------FTPSAASYSSALLAYRKMEDGDGALKFFVEIK 290
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I A + R D+A + +S+E +G++P+++++N LI+ K+ K D+ F E++
Sbjct: 433 NALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM-- 490
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G PD +TY++ + K Q L + EM
Sbjct: 491 -----VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEM 525
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
W+ +T AV++ ++ EA ++L E EKGL P ++ +I+A K ++ +
Sbjct: 285 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDAL 344
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E +K G K P+++TY L+ GF + + + ++ +M++ C + D T
Sbjct: 345 RVLELMKLRGCK-------PNVWTYNALVQGFCNEGKVHKAMTLLNKMRA-CGVNPDAVT 396
Query: 132 FTAMVDALLYSGSIK 146
+ ++ G I+
Sbjct: 397 YNLLIRGQCIDGHIE 411
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAVI + + A + L V G PD+ ++N LI +T ++DV +D
Sbjct: 157 NAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVA-------RD 209
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K GF D+ +YATL+ G A + +E+ EM
Sbjct: 210 LFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM 249
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + +R+DEA+++LE V +G+ P ++YNIL+++ + KL+
Sbjct: 288 NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLF 347
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
+ ++C HP + TY TLL H K L + EM K C
Sbjct: 348 RGMAQ--RRC-----HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGC 390
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 30/163 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+ + ++E + +RID+A +E + +G++PD+ YN ++S C + K + + F
Sbjct: 113 DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 172
Query: 74 NEQLKD-------------NG--------------QKCSSGGFHPDIFTYATLLMGFRHA 106
+ +K NG ++ + G+ P +Y TL+ GF
Sbjct: 173 EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 232
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
KDL + + VF+ N + + T+T ++D L SG ++
Sbjct: 233 KDLVAAKD-VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAA 274
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVT 70
+ +K I + +I + R++EA +++E + + PD+L+Y ++ KTK++D
Sbjct: 74 KRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDA 133
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+ E++ ++ G PD F Y +L G
Sbjct: 134 LATVEEM-------ATRGIKPDAFIYNFVLSGL 159
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ ++ ++ A ++L+ V+KG+ P+ +Y+ LI K +++D
Sbjct: 253 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLL 312
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
EQ+ + G P + TY LL A L+ ++ M
Sbjct: 313 EQM-------VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 350
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I A + + EA ++ E + +G+ P++++YN +I K +LD
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA---- 377
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D ++ G PD+FT+ TL+ G+ AK + +E++ EM L+ + T+
Sbjct: 378 ---EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNT 433
Query: 135 MVDALLYSGSI 145
++ G +
Sbjct: 434 LIHGFCLVGDL 444
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI +++I+ + R+DEA Q+ S+ K P+ +++N LI+ K ++D +
Sbjct: 543 DTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL--- 599
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + G++ G D Y TL+ GFR ++ L+I EM S
Sbjct: 600 ELFCEMGRR----GIVADAIIYITLIYGFRKVGNINGALDIFQEMIS 642
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 16/222 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +I+ A+RID+ ++L E +GL ++++YN LI L+ + +
Sbjct: 392 DVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLS 451
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ S G PDI T TLL G L+ LE+ M+ + LD S
Sbjct: 452 QQM-------ISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK-SKMDLDASHPFN 503
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
V+ + + +I + GL F E + P G+ P Y SM+ L + D
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+ M S SP V + L+ G+VD L+
Sbjct: 564 TQMFVSMGSKS---FSPNVV--TFNTLINGYCKAGRVDDGLE 600
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 35 EAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
EA ++ E + +G+ PD+++Y+ +I K +LD + G K F P++
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA---TQMFVSMGSK----SFSPNV 579
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYAL 153
T+ TL+ G+ A + LE+ EM ++ D + ++ G+I AL
Sbjct: 580 VTFNTLINGYCKAGRVDDGLELFCEMGR-RGIVADAIIYITLIYGFRKVGNIN----GAL 634
Query: 154 CIFGEIVKR-------VCSN--PGLWPKPHL--YVSMMHELAARVDYDI 191
IF E++ N G W K L V+M+ +L V Y +
Sbjct: 635 DIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGYQL 683
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 47/251 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQ-ILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ I + +V +AQR+DEAYQ +L+ VE K +PD +++N++I K ++
Sbjct: 138 DVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEM 197
Query: 74 NEQLKDNGQK-------------CSSGGF-----------------HPDIFTYATLLMGF 103
E L G C SG P++ T+ L+ G
Sbjct: 198 LETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGL 257
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
A L+ E+V +MK+ +L D T+T ++D L G V +F E+++
Sbjct: 258 CKADRLEHAFELVKQMKA-RDLRADTFTYTTLMDGLCKQGRTSEVSR----VFEEMLREG 312
Query: 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAA 223
C NP + Y +++H + R M I P+V +L+E
Sbjct: 313 C-NPSVVT----YTTLVHAHCKAGSLQDAQQVIRSMVAKG---IPPDVTTYT--VLLEGL 362
Query: 224 LNDGQVDLALD 234
+G+V A +
Sbjct: 363 FENGKVRTATE 373
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I A + + EA ++ E + +G+ P++++YN +I K +LD
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA---- 377
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D ++ G PD+FT+ TL+ G+ AK + +E++ EM L+ + T+
Sbjct: 378 ---EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNT 433
Query: 135 MVDALLYSGSI 145
++ G +
Sbjct: 434 LIHGFCLVGDL 444
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI +++I+ + R+DEA Q+ S+ K P+ +++N LI+ K ++D +
Sbjct: 543 DTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL--- 599
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + G++ G D Y TL+ GFR ++ L+I EM S
Sbjct: 600 ELFCEMGRR----GIVADAIIYITLIYGFRKVGNINGALDIFQEMIS 642
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 16/222 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +I+ A+RID+ ++L E +GL ++++YN LI L+ + +
Sbjct: 392 DVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLS 451
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ S G PDI T TLL G L+ LE+ M+ + LD S
Sbjct: 452 QQM-------ISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK-SKMDLDASHPFN 503
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
V+ + + +I + GL F E + P G+ P Y SM+ L + D
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+ M S SP V + L+ G+VD L+
Sbjct: 564 TQMFVSMGSKS---FSPNVV--TFNTLINGYCKAGRVDDGLE 600
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 35 EAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
EA ++ E + +G+ PD+++Y+ +I K +LD + G K F P++
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA---TQMFVSMGSK----SFSPNV 579
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYAL 153
T+ TL+ G+ A + LE+ EM ++ D + ++ G+I AL
Sbjct: 580 VTFNTLINGYCKAGRVDDGLELFCEMGR-RGIVADAIIYITLIYGFRKVGNIN----GAL 634
Query: 154 CIFGEIVKRVCSNPGLWP 171
IF E++ + G++P
Sbjct: 635 DIFQEMI-----SSGVYP 647
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 89/190 (46%), Gaps = 22/190 (11%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T+ ++I+ + ID A ++L ++ KGL+ D +Y LI K + +
Sbjct: 542 TVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLN 601
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+L+ G P+ F Y +++ GF++ +++ +++ +M + + D T+T++
Sbjct: 602 ELR-------GAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVN-EGIPCDLKTYTSL 653
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+D LL SG + LYA I E++ + G+ P + +++ L + ++
Sbjct: 654 IDGLLKSGRL----LYASDIHTEMLSK-----GILPDDRAHTVLINGLCNKGQFE----N 700
Query: 196 YRRMWPDSTG 205
R++ D G
Sbjct: 701 ARKILEDMNG 710
Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 25/232 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N ++ + +++EA + E + KG+ P+ +SYN +I + ++
Sbjct: 366 NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVY 425
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ DN GF P+ T+ L+ G+ D+++ I MK N++ +T
Sbjct: 426 KEMLDN-------GFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKD-ANILPTDTTLGI 477
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L +G +F + V + G P Y +++ + ++ +
Sbjct: 478 IIKGLCKAGR----SFEGRDLFNKFVSQ-----GFVPTCMPYNTIIDGFIKEGNINLASN 528
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKGI 246
YR M I+P L++ +DLAL KL N + R KG+
Sbjct: 529 VYREMCEVG---ITPSTVTYTS--LIDGFCKGNNIDLAL-KLLNDMKR-KGL 573
>gi|68566156|sp|P0C043.1|PP318_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At4g17915
Length = 463
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A + ID A ++ + ++ +P+ ++YNILI+ K++++ +LK +
Sbjct: 158 NVLLDALCKCGYIDNALELFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKS 217
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G+ P+ TY T+L + + ++ L++ EMK D + A+V AL+
Sbjct: 218 -------GYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKR-EGYTYDGYAYFAVVSALI 269
Query: 141 YSGSIK 146
+G K
Sbjct: 270 KTGRTK 275
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ + N +I I+EAY + + + G+ PD +YN LI+ + LD V F
Sbjct: 47 DVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLF 106
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L+ G +PD+++Y TL+ + + ++++ L T+
Sbjct: 107 DEMLE--------WGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYN 158
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKR 162
++DAL G I AL +F E+ R
Sbjct: 159 VLLDALCKCGYID----NALELFKEMQSR 183
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T ++N +++ + +++++A I++ + G++PD ++YN LIS + ++
Sbjct: 11 LSTRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAV 70
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++D G PD+ TY +L+ G L +L + EM
Sbjct: 71 TRRMRD-------AGIRPDVATYNSLIAGAARRLMLDHVLYLFDEM 109
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +++ + +RI Q+ LE +G D +Y ++SA IKT + +
Sbjct: 222 NAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYM 281
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++L G++ DI +Y TLL + +L ++ +++ E++ + D T T
Sbjct: 282 QELVRKGRR-------HDIVSYNTLLNLYFKDGNLDAVDDLLGEIER-RGMKADEYTHTI 333
Query: 135 MVDALLYSGSIK 146
+V+ LL +G +
Sbjct: 334 IVNGLLRTGQTR 345
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 17/186 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N+++ A E+ + DEA E GL P+ +YNILI + K+ D + +
Sbjct: 118 NSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWE 177
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G F PD+F+Y TL+ + L++ EM + D + + ++D
Sbjct: 178 QG-------FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE-RGVTPDVACYNILIDGF 229
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
G I L A EI +R+ P ++P Y M++ L +D + RM
Sbjct: 230 FKKGDI----LNA----SEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 281
Query: 200 WPDSTG 205
+ G
Sbjct: 282 KKNERG 287
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ N +I +A+R EAY ++ E + KG +P+ ++Y++L++ + KKLD+ +
Sbjct: 499 VVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWC 558
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
Q + GF PD+ + ++ G + ++ L++ EMK
Sbjct: 559 QALEK-------GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V N ++ A RI+E ++ + +EK +SYNILI + K+D + E
Sbjct: 324 DVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWE 383
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
L + + C + D TY L+ G L L I+ E ++ LD +++M
Sbjct: 384 LLPE--KDCCA-----DSMTYGVLVHGLCKNGYLNKALSILEEAEN-GRGDLDTFAYSSM 435
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175
++ L G + V + ++ K C P PH+
Sbjct: 436 INGLCREGRLDEVA----GVLDQMTKHGCK-----PNPHV 466
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N V NAVI A ++++A + + V KG P ++YN LI+ K ++
Sbjct: 461 KPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYA 520
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
+++ G K P++ TY+ L+ G K L L +
Sbjct: 521 LVKEMLHKGWK-------PNMITYSLLMNGLCQGKKLDMALNL 556
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T +++I R+DE +L+ + K G +P+ N +I+ ++ KL+
Sbjct: 427 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLE----- 481
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ L+ G S G F P + TY TL+ G A+ +V EM
Sbjct: 482 -DALRFFGNMVSKGCF-PTVVTYNTLINGLSKAERFSEAYALVKEM 525
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 32/134 (23%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N +I+ + I A +I E + KG + P+ SYN++I+ K K D + ++K
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282
Query: 79 DN--GQK-----------CSSG---------------GFHPDIFTYATLLMGFRHAKDLQ 110
N GQ C SG G PD+ Y T+L G+ A ++
Sbjct: 283 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 342
Query: 111 SLLEI--VFEMKSC 122
LE+ V E + C
Sbjct: 343 ECLELWKVMEKEGC 356
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKT 64
+++ +K N +I RE + ++ VE+GL+P++ +Y LI K
Sbjct: 303 KLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKG 362
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
D ++K GF P+I+TY ++ GF +Q + V M +
Sbjct: 363 GSFDRAFELMNKMKQE-------GFLPNIYTYNAVIDGFCKKGKIQEAYK-VLRMATSQG 414
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
L D+ T+T ++ G I YAL +F +V+ C
Sbjct: 415 LKFDKITYTILITEHCKQGHIT----YALDLFDRMVENGC 450
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA 60
FE + +E + N NAVI+ + +I EAY++L + +GL+ D ++Y ILI+
Sbjct: 369 FELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITE 428
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K + + +++ +NG C PDI Y +L+ + + ++ + F+
Sbjct: 429 HCKQGHITYALDLFDRMVENG--CC-----PDIEAYTSLISTYCQQRQMEESQKF-FDKC 480
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
L+ + T+T+M+ G + AL +F +V+ C
Sbjct: 481 LMIGLLPTKQTYTSMIAGYCKVGRSTM----ALRVFERMVQNGC 520
>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Glycine max]
Length = 647
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 40/186 (21%)
Query: 3 EENEIVNREHWK---LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILI 58
E +++N+ H K +TI+ N V A ++I + + E +++ G PD +YNILI
Sbjct: 421 EAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILI 480
Query: 59 SACIKTKKLDVTMPFNEQLKD-------------------NG---------QKCSSGGFH 90
S+ + ++D+ + F E+L++ NG ++ G +
Sbjct: 481 SSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLN 540
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NLILDRSTFTAMVDALLYSG-SIK 146
PD+ TY+TL+ F ++ + EM + C NLI T+ ++D L SG + +
Sbjct: 541 PDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLI----TYNILLDCLERSGRTAE 596
Query: 147 VVGLYA 152
V LYA
Sbjct: 597 AVDLYA 602
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 22 AVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
+++E+ A ++ EA +L + EKG+ D++ YN + +A + K++ E++K +
Sbjct: 408 SMLESLCSAGKMTEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQD 467
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHA 106
G PDIFTY L+ F A
Sbjct: 468 GPP-------PDIFTYNILISSFGRA 486
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAY-QILESVEKGLEPDSLSYNILIS 59
FEE E K + I N++I + +DEA+ + E EKGL PD ++Y+ LI
Sbjct: 495 FFEELE---NSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIE 551
Query: 60 ACIKTKKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
KT K+++ F+E L ++C+ P++ TY LL
Sbjct: 552 CFGKTDKVEMACRLFDEML---AEECT-----PNLITYNILL 585
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYN-ILISACIKTKKLDVTMPF 73
N I N +I+ + +RID+A Q++ + + +GL+P++++YN IL C K+ D+
Sbjct: 499 NAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYC---KQGDI---- 551
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ D Q ++ GF D+ TY TL+ G A Q L+++ M+
Sbjct: 552 -KKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMR 597
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
N++V R + N +I A R++EA + V KGL PD ++NILI+A K
Sbjct: 349 NQMVERGCLP-DITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCK 407
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ + E++K S G PD TY TL+ L L+++ EM+S
Sbjct: 408 VGDPQLALRLFEEMK-------SSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460
Query: 124 NLILDRSTFT--AMVDAL 139
RST T ++D L
Sbjct: 461 ---CPRSTVTYNTIIDGL 475
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query: 8 VNREHWKLNTIVMNAVIEA-SREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKT 64
+ RE ++ V+++ +E+ +R+ +D +L ++ G++ D++ YN L++ ++
Sbjct: 104 MRREGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEG 163
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+ + ++ + G K PD+ T+ TL+ A +++ + ++ EM S
Sbjct: 164 SKMKLLETVYSEMGERGIK-------PDVVTFNTLMKALCRAHQVRTAVLMLEEMSS-SG 215
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+ D +TFT ++ + GSIK AL + +++ CS
Sbjct: 216 VAPDETTFTTLMQGFVEEGSIKA----ALRVKARMLEMGCS 252
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACI 62
+ EI N ++ + I N + + + A ++++ V++G +PD +YNI+++
Sbjct: 279 QQEIAN--GFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLC 336
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K +L+ Q+ + G C PDI T+ TL++ L+ L++ ++ +
Sbjct: 337 KNGQLEEAKGILNQMVERG--C-----LPDITTFNTLIVALCSGNRLEEALDLARQV-TL 388
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
L D TF +++AL G ++ AL +F E+ C+
Sbjct: 389 KGLSPDVYTFNILINALCKVGDPQL----ALRLFEEMKSSGCT 427
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 20/155 (12%)
Query: 34 DEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D+AY E +E+G+ PD ++YN +++A K + +D M ++ N G PD
Sbjct: 223 DKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKN-------GVMPD 275
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI-LDRSTFTAMVDALLYSGSIKVVGLY 151
TY +++ G+ + + + I+ +M C + + D T+T+++D L +G +
Sbjct: 276 CITYNSIVHGYCSSGQSKEAIGILEKM--CSDGVEPDAVTYTSLMDYLCKNGRC----IE 329
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
A I ++KR GL P Y +++H A +
Sbjct: 330 ARKILDSMIKR-----GLKPNVITYSTLLHGYATK 359
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLD 68
+ K N I + ++ + E +L+ V G++PD ++ILI AC K + +D
Sbjct: 339 KRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVD 398
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
V M +++ Q+ PD+ TY TL+ G
Sbjct: 399 VAMFVFSKMRQ--QR-----LTPDVVTYGTLIDGL 426
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 17/176 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTK 65
V ++ +++ I+ ++++ +R A I+ E G P SYNIL+
Sbjct: 124 VIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHES 183
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ + + D+G C PD+ +Y+T++ G D EM +
Sbjct: 184 RSQEALELLHMMADDGGDCP-----PDVVSYSTIIDGLFKEGDSDKAYSTYHEMLE-RGI 237
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ D T+ +V AL + ++ A+ + +VK G+ P Y S++H
Sbjct: 238 LPDVVTYNTIVAALCKAQAMD----KAMDVLNRMVKN-----GVMPDCITYNSIVH 284
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 47/251 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQ-ILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ I + +V +AQR+DEAYQ +L+ VE K +PD +++N++I K ++
Sbjct: 138 DVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEM 197
Query: 74 NEQLKDNGQK-------------CSSGGF-----------------HPDIFTYATLLMGF 103
E L G C SG P++ T+ L+ G
Sbjct: 198 LETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGL 257
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
A L+ E+V +MK+ +L D T+T ++D L G V +F E+++
Sbjct: 258 CKADRLEHAFELVKQMKA-RDLRADTFTYTTLMDGLCKQGRTSEVSR----VFEEMLREG 312
Query: 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAA 223
C NP + Y +++H + R M I P+V +L+E
Sbjct: 313 C-NPSVVT----YTTLVHAHCKAGSLQDAQQVIRSMVAKG---IPPDVTTYT--VLLEGL 362
Query: 224 LNDGQVDLALD 234
+G+V A +
Sbjct: 363 FENGKVRTATE 373
>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA 60
FE E + R+ + L+ N +++A ++ +D+AYQ+ E + +K EPD+ +Y ILI
Sbjct: 206 FEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRM 265
Query: 61 CIKTKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPD 92
+ K + F +++ G K GG P+
Sbjct: 266 SGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPN 325
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
FTY+ L L L E++ C+ +++S ++ +V +L SG +
Sbjct: 326 QFTYSITLDILAKEGQLHRLNEVL----DICDRYMNKSIYSYLVKSLSKSGHV 374
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E +N K + I N++I + +DEA+ + + + EKG PD +Y+ILI K+
Sbjct: 487 EDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKS 546
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAKDLQS 111
K+D M N L + C P++ TY LL RH K ++
Sbjct: 547 NKVD--MACNLFLDMIAEGCI-----PNVVTYNILLDCLERHGKTAEA 587
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + +D+A + E + +PD ++YN LI+ K LD +++++
Sbjct: 467 NIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQE 526
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
G + PD+FTY+ L+ F + ++ CNL LD
Sbjct: 527 KG-------YGPDVFTYSILIECFGKSN----------KVDMACNLFLD 558
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+++ A+ + E V+ GL P+ ++Y LI K +KLD E +K +G +
Sbjct: 680 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR------- 732
Query: 91 PDIFTYATLLMGFRHAKDL---QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
P++ TY L+ G + + L +++ E N++ T+TAM+D L +GS +
Sbjct: 733 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV----TYTAMIDGLCKNGSTSL 788
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207
AL +F +++++ C P Y S++ L + ++ + + + G I
Sbjct: 789 ----ALEMFNKMIEQGC-----LPNLLTYSSLIRALGQEGKVEEAENLFAEL--ERHGLI 837
Query: 208 SPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240
E+ ++EA + G+V+ A + L I
Sbjct: 838 PDEITYVK---MIEAYIMSGKVEHAFNFLGRMI 867
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
N ++ NAVI A + + +A I++ V E + PD+ +Y +I + LD + F
Sbjct: 384 NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVF 443
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
N+ K+ G P+ TY+TL+ G + + +++ EM
Sbjct: 444 NQMAKE--------GCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 481
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+ +G++P+ L YN +I+A K D + E + +K PD FTY ++++G
Sbjct: 377 LSEGVQPNLLIYNAVINALCK----DGNVADAETIM---KKVFESEMSPDTFTYTSMILG 429
Query: 103 FRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSIK 146
DL S L++ +M K C + T++ +++ L SG +
Sbjct: 430 HCRKHDLDSALQVFNQMAKEGCE--PNTVTYSTLINGLCDSGRVN 472
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
NT+ NA+I E +RI A+ +L + + GL + ++YN +I CI +
Sbjct: 559 NTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVM 618
Query: 74 NEQLK------------------DNGQKCSS---------GGFHPDIFTYATLLMGFRHA 106
N L+ D+G S+ GG PD ++Y L+ GF
Sbjct: 619 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 678
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
++S + EM L + T+TA++D
Sbjct: 679 SKMESAFGLFNEMVD-DGLCPNEVTYTALIDG 709
>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
Length = 526
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A + +++A + +S+ + + PD SY ++SA + ++ F +++K
Sbjct: 296 NILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKV 355
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G F P+I TY TL+ G+ A D++ ++E V+E + +++ T ++DA
Sbjct: 356 DG-------FEPNIVTYGTLIKGYAKANDVEKMME-VYEKMRLSGIKANQTILTTIMDA- 406
Query: 140 LYSGSIKVVG 149
SG K G
Sbjct: 407 --SGRCKNFG 414
>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
Length = 489
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ R+ N ++ AQ++DEA +EK G+ + ++N L+SA K+K
Sbjct: 131 IMRKEGVANVETFGIIMRKYARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLLSALCKSKN 190
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNL 125
+ +++ + F PD TY+ LL G+ A L + E+ +M + C
Sbjct: 191 VRKAQEIFDKMNNR--------FSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQ- 241
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
D T+ MVDAL +G ++ A+C+ ++ R C P +Y ++H
Sbjct: 242 -PDIVTYGIMVDALCKTGRVE----EAVCVVQDMSSRGCQ-----PTTFIYSILVH 287
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N ++ A + + A ++L + V +GL P+ ++Y L+S K +L
Sbjct: 576 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 635
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K S G P++FTY L++GF A + L++ EM C + D +
Sbjct: 636 AQMK-------SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM-VCAGISPDHVVYGT 687
Query: 135 MVDALLYSG 143
+ L SG
Sbjct: 688 LAAELCKSG 696
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N VI + RIDEA Q+ E + E+ + PDS SY ILI K KL+ ++
Sbjct: 292 NIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLN-------DARN 344
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVD 137
QK G P Y +L+ G A E+ +M + C + T+ M+D
Sbjct: 345 LFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPV---TYNVMID 401
Query: 138 ALLYSGSIK 146
A G ++
Sbjct: 402 ASCKRGMLE 410
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 24/144 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYN-ILISACIKTK-------- 65
+ + N V++ ++ R++EA + +E+ G P+ S+N I++ C ++K
Sbjct: 427 DVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRG 486
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSC 122
KLD +++ D+G PD+ TY+TL+ G D + LLE + + + C
Sbjct: 487 KLDEAFRLLKRMTDDGHV-------PDVVTYSTLISGLCSIARVDDARHLLEDMVK-RQC 538
Query: 123 CNLILDRSTFTAMVDALLYSGSIK 146
++ ++T ++ L +G IK
Sbjct: 539 KPTVVTQNT---LIHGLCKAGRIK 559
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 32 RIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+D+A +LE V++ +P ++ N LI K ++ + + +GQ
Sbjct: 522 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS------- 574
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI-KVVG 149
PD+ TY TL+ G A + E++ +M + L + T+TA+V L + + + G
Sbjct: 575 PDVVTYNTLVHGHCRAGQTERARELLSDMVA-RGLAPNVVTYTALVSGLCKANRLPEACG 633
Query: 150 LYA 152
++A
Sbjct: 634 VFA 636
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 38/218 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++++ +A+R DEA ++++ +E+ G P ++YN LIS+ +K L+ +
Sbjct: 277 DKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALK 336
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC-------NLI 126
++++ G K PD+ TY TL+ G A + + + EM ++ C N +
Sbjct: 337 QEMEVKGIK-------PDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNAL 389
Query: 127 LD----RSTFTAMV---DALLYSGSIKVVGLYA--LCIFGEI--------VKRVCSNPGL 169
+ R F M+ D L +G + + + L +FG+ V + G
Sbjct: 390 IKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY 449
Query: 170 WPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPD 202
P+ YVS++ + +D+ Y+RM +PD
Sbjct: 450 IPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPD 487
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G+ PD +YN LIS C + +++K + GF PD T+ +LL +
Sbjct: 236 EHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMK-------ASGFEPDKVTFNSLLDVY 288
Query: 104 RHAKDLQSLLEIVFEMK 120
A+ +E++ EM+
Sbjct: 289 GKARRHDEAIEVIQEME 305
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I R EA Q+ + ++ G EPD +++N L+ K ++ D + ++++
Sbjct: 247 NTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMER 306
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G C P + TY +L+ + L+ + + EM+ + D T+T ++ L
Sbjct: 307 VG--CP-----PSVVTYNSLISSYVKDGLLEQAVALKQEME-VKGIKPDVVTYTTLISGL 358
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVC 164
+G I A+ + E+V+ C
Sbjct: 359 DRAGKIDA----AIVEYDEMVRNGC 379
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T+V+N + RE +R+DEA+ +LE +V G EPD ++YN+ I K +++D +
Sbjct: 11 TVVINGL---CRE-KRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLK 66
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ + +KC P TY L+ G A L + ++ +M N + T+T +
Sbjct: 67 KMDE--KKC-----LPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLK-TYTVV 118
Query: 136 VDALLYSGSIK 146
+D L +G ++
Sbjct: 119 IDGLSKAGRVE 129
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ + ++I+ +A RI EA Q+ E+VE+G PD+++Y +I K +++
Sbjct: 185 DVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 244
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++++ G + PD TYA L+ GF AK + + +M ++ T+
Sbjct: 245 FHEMRNRG-------YEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQ-SGTVVSTVTYN 296
Query: 134 AMVDALLYSGSI 145
++D L +G +
Sbjct: 297 IILDGLCKAGRV 308
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
T+ A+++ +A R+DEA +LE VEKG P +Y ++I K +++
Sbjct: 76 TTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIF 135
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRST 131
+ NG + PD F Y L+ G + ++ +L + K + D T
Sbjct: 136 VDMLGNGCR-------PDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVT 188
Query: 132 FTAMVDALLYSGSIKVVGLYALCIF-GEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+T+++D L +G I L A +F E V+R G P Y S++ L
Sbjct: 189 YTSLIDGLCKAGRI----LEARQVFDDEAVER-----GFIPDAVTYTSIIDGL 232
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 28/169 (16%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+++G EP+ +SYNI+I + KL + E+L + C PD++T+ L G
Sbjct: 354 LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR-RLC------PDVYTFNAFLHG 406
Query: 103 FRHAKDLQS----LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGE 158
D S L E + + NL +++ ++D + +G ++V AL IF E
Sbjct: 407 LCQRLDTVSDGVELFESMVSQGTSPNL----HSYSILMDGICRAGGLEV----ALEIFRE 458
Query: 159 IVKRVCSNPGLWPKPHLYVSMMHEL--AARVD--YDIVKSPYRRMWPDS 203
+V R G+ P ++ +++ L A RVD ++ + RR PD+
Sbjct: 459 MVSR-----GVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDA 502
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108
PD +++ ++I+ + K+LD E + G PD TY + G A+
Sbjct: 5 PDMVAFTVVINGLCREKRLDEAFSVLE-------RAVRAGCEPDYVTYNVFIDGLCKAER 57
Query: 109 LQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSI 145
+ +++ +M K C + T+TA+VD LL +G +
Sbjct: 58 VDDAFQLLKKMDEKKCLPTTV---TYTALVDGLLKAGRL 93
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + +R+DEA+++LE V +G+ P ++YNIL+++ + KL+
Sbjct: 183 NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLF 242
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
+ ++C HP + TY TLL H K L + EM K C
Sbjct: 243 RGMAQ--RRC-----HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGC 285
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 30/163 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+ + ++E + +RID+A +E + +G++PD+ YN ++S C + K + + F
Sbjct: 8 DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 67
Query: 74 NEQLKD-------------NG--------------QKCSSGGFHPDIFTYATLLMGFRHA 106
+ +K NG ++ + G+ P +Y TL+ GF
Sbjct: 68 EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 127
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
KDL + + VF+ N + + T+T ++D L SG ++
Sbjct: 128 KDLVAAKD-VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAA 169
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ ++ ++ A ++L+ V+KG+ P+ +Y+ LI K +++D
Sbjct: 148 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLL 207
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
EQ+ + G P + TY LL A L+ ++ M + C ++ T+
Sbjct: 208 EQM-------VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVV---TY 257
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
++ AL + + G + L + E++ + C
Sbjct: 258 NTLLRALCHHKQLD--GAHRL--YAEMIAKGC 285
>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 692
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
E+W L+ + + +I+ A D+ ++ + ++ G++P+ +YN L+ A +++KK
Sbjct: 255 ENWSLDAVTFSTLIKMYSMAGNYDKCLEVYQEMKVLGVKPNVATYNTLLGAMLRSKKHRQ 314
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++++K N G PD TYA+LL + A+ + L + EMK
Sbjct: 315 AKAIHKEMKSN-------GVSPDFITYASLLEVYTRAQCSEDALGVYKEMK 358
>gi|168014765|ref|XP_001759922.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689052|gb|EDQ75426.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISAC 61
+E ++ R+ L+T N + A ++++ DEA+ I + + PD +YNILI+AC
Sbjct: 485 QETDLTTRKKL-LDTTAYNTAMNAFVQSKKFDEAWDIFTEMRSLDVRPDIYTYNILINAC 543
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + + + ++ PD+ TY +L+ H +L S L ++ EM+
Sbjct: 544 SHKQSVSTALELMDIMRK-------AKIAPDLITYNSLIKVMCHCGELDSGLRVLGEMQD 596
Query: 122 CCNLILDRSTFTAMVDALLY 141
+ D +TF ++ + Y
Sbjct: 597 -AGVQPDVTTFNTLLASASY 615
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
+L+ NA++ A E + + A +++ S+E G+ PD+ ++ L+ ++ KLD
Sbjct: 300 RLSIYTFNALLRAVVEGRGVSHALRVVRSMEAVGVRPDTHTFTTLLDGYSRSGKLDKAEA 359
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++D S P I+TY L+ D + L + +MK D T+
Sbjct: 360 LLAKMED-----SKPNQRPSIYTYNILIKACASKNDPERALRVFAKMKE-SGTAPDSHTY 413
Query: 133 TAMVDA 138
A++ A
Sbjct: 414 CALLSA 419
>gi|297800292|ref|XP_002868030.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
lyrata]
gi|297313866|gb|EFH44289.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
lyrata]
Length = 463
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A + ID A ++ + ++ +P+ ++YNILI+ K++++ +LK +
Sbjct: 158 NVLLDALCKCGYIDNALELFKEMQSKFKPELMTYNILINGLCKSRRVGTAKWMLTELKRS 217
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G+ P+ TY T+L + + ++ L++ EMK D + A+V AL+
Sbjct: 218 -------GYTPNAVTYTTILKLYIKTRRIRRGLQLFLEMKR-EGYTYDGYAYFAVVSALI 269
Query: 141 YSGSIK 146
+G K
Sbjct: 270 KTGRTK 275
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ + N +I I+E Y + L + G+ PD +YN LI+ + LD V F
Sbjct: 47 DVVTYNTLISGYCRFVGIEEGYAVTLRMRDAGIRPDVATYNSLIAGAARRLMLDRVLYLF 106
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L+ G +PD+++Y TL+ + + ++++ L T+
Sbjct: 107 DEMLE--------WGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLSPGPDTYN 158
Query: 134 AMVDALLYSGSI 145
++DAL G I
Sbjct: 159 VLLDALCKCGYI 170
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKK 66
+ R + N + +++ + +RI Q+ LE +G D +Y ++SA IKT +
Sbjct: 214 LKRSGYTPNAVTYTTILKLYIKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGR 273
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ ++L G++ DI +Y TLL + +L ++ +++ E++ +
Sbjct: 274 TKEAYEYMQELVRKGRR-------HDIVSYNTLLNLYFKDGNLDAVDDLLGEIER-KGMK 325
Query: 127 LDRSTFTAMVDALLYSGSIK 146
D T T +V+ LL +G +
Sbjct: 326 ADEYTHTIIVNGLLRTGQTR 345
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T ++N +++ + +++++A I++ + G+ PD ++YN LIS + ++
Sbjct: 11 LSTRLLNICVDSLCKFRKLEKAETLIIDGIRLGVAPDVVTYNTLISGYCRFVGIEEGYAV 70
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++D G PD+ TY +L+ G L +L + EM
Sbjct: 71 TLRMRD-------AGIRPDVATYNSLIAGAARRLMLDRVLYLFDEM 109
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ ++ R++ A+ +L +++ PD++SYNIL + K+ + + LK+
Sbjct: 174 FNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMAL---RVLKE 230
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDA 138
Q+ G P + TY T+L G+ + ++ E EMK C +D ++T ++
Sbjct: 231 MVQR----GIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCE--IDVVSYTTVIHG 284
Query: 139 LLYSGSIKVVGLYALCIFGEIVK 161
+G +K A +F E+VK
Sbjct: 285 FGEAGEVK----KAKRVFDEMVK 303
>gi|357502513|ref|XP_003621545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241489|gb|ABD33347.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496560|gb|AES77763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 791
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 19/129 (14%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N+V+ + +I++A + + ++ G EPD +Y IL+ C +T ++DV + ++KD
Sbjct: 279 NSVLSVLCKVGKINDALIVWDELKGCGYEPDEFTYTILVRGCCRTYRMDVALRIFNEMKD 338
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-----KSCCNLILDRSTFTA 134
N GF P + Y +L G A + ++ +M K+ C ST+
Sbjct: 339 N-------GFRPGVLVYNCVLDGLFKAAKVNEGCQMFEKMAQEGVKASC------STYNI 385
Query: 135 MVDALLYSG 143
++ L+ +G
Sbjct: 386 LIHGLIKNG 394
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+ + R D A +L+ + ++G D + YN LI+A K ++D F EQ+K
Sbjct: 659 NMIIQGLGKMGRADLASAVLDGLLKQGGYLDIVMYNTLINALGKAGRIDEVNKFFEQMK- 717
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRS 130
S G +PD+ TY TL+ A KD L+++ + N + D +
Sbjct: 718 ------SSGINPDVVTYNTLIEIHSKAGRLKDAYKFLKMMIDAGCTPNHVTDTT 765
>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Brachypodium distachyon]
Length = 410
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I +++ +A Q+LE + + G+ P +++N+L+ K K+ + F+
Sbjct: 142 NVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFS 201
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q++ G+ P TY L+ GF A+D+ +MK L + T+T
Sbjct: 202 NQMR-------MAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKE-RGLAPTKVTYTI 253
Query: 135 MVDAL 139
++DA
Sbjct: 254 LIDAF 258
>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 525
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA-CI 62
NE+V +E + + N +++A + + EA + +++GLEPD +S N L++ C+
Sbjct: 255 NEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCL 314
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + F+ ++ G P++ +Y+TL+ G+ K + L ++ EM
Sbjct: 315 RGCMSEAKEVFDRMVER--------GKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQ- 365
Query: 123 CNLILDRSTFTAMVDALLYSGSI 145
NL+ D T+ ++D L SG +
Sbjct: 366 RNLVPDTVTYNCLLDGLSKSGRV 388
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 3 EENEIVNR--EHWKL-NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILI 58
E E+ +R E KL N I + +I + + +DEA ++L E ++ L PD+++YN L+
Sbjct: 320 EAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLL 379
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K+ ++ E ++ +GQ PD+ TY LL + + L L + F+
Sbjct: 380 DGLSKSGRVLYEWDLVEAMRASGQA-------PDLITYNVLLDDYLKRECLDKALAL-FQ 431
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ + T+ ++D L G +K
Sbjct: 432 HIVDTGISPNIRTYNILIDGLCKGGRMK 459
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTM 71
+ + + +I + + +A ++L +EKG + P+ + YN+++ K +
Sbjct: 157 FSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEAC 216
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
++ G D+FTY +L+ GF A Q + ++ EM ++ D T
Sbjct: 217 GLCSEMVGKG-------ICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYT 269
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
F +VDAL G + A +FG ++KR
Sbjct: 270 FNILVDALCKLGMVA----EARNVFGLMIKR 296
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ N +++ ++ R+ + ++E++ G PD ++YN+L+ +K + LD +
Sbjct: 371 DTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALF 430
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + D G P+I TY L+ G +++ EI F++ S + T+
Sbjct: 431 QHIVDT-------GISPNIRTYNILIDGLCKGGRMKAAKEI-FQLLSVKGCRPNIRTYNI 482
Query: 135 MVDALLYSG 143
M++ L G
Sbjct: 483 MINGLRREG 491
>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 544
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R H L+ N +I A +DEA+++L + G PD ++YNIL+ + ++D
Sbjct: 206 RSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVD 265
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
E++ C F P++ +Y T++ G+ + + +EM +
Sbjct: 266 RARDLLEEV------CLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVR-SGTKPN 318
Query: 129 RSTFTAMVDALLYSGSI-KVVGLYALCIF 156
TF+A+VD + +G + +G++ +F
Sbjct: 319 VFTFSALVDGFVKAGDMASALGMHKKILF 347
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Query: 33 IDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+DEA ++ ++ V KG P+ +SYN LI+ K +++D M G+ C P
Sbjct: 376 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLF------GEMCRQE-LIP 428
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLI--------LDRSTFTAMVDALL 140
D TY+TL+ G H + LQ + + EM +C NL+ L ++ + A ALL
Sbjct: 429 DTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALL 488
Query: 141 YS--GS-------IKVVGLYALCIFGEI--VKRVCSN---PGLWPKPHLYVSMMHELAAR 186
+ GS + + + +C GE+ + + SN GL P Y M++ L R
Sbjct: 489 KAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRR 548
Query: 187 VDYDIVKSPYRRM 199
D +R M
Sbjct: 549 GLLDEASKLFREM 561
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 29/231 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N ++ +I + R+ A+ +L + K G +PD+ ++ LI C++ K + F
Sbjct: 95 NIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLF 154
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRST 131
++ + + GF PD+ TY TL+ G + + + ++ M K+C +
Sbjct: 155 DKMIGE--------GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVF---A 203
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++D+L + A +F E+V + G+ P Y S++H L ++
Sbjct: 204 YNTIIDSLCKDRQVT----EAFNLFSEMVTK-----GISPDIFTYNSLIHALCNLCEWKH 254
Query: 192 VKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
V + M DS I P+V + + +++A +G+V A D + I R
Sbjct: 255 VATLLNEMV-DS--KIMPDVV--SFNTVVDALCKEGKVTEAHDVVDKMIQR 300
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + R D+ Q+L+++ + LEPD +S+N LI+A K+ L F+ L
Sbjct: 65 VFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLL 124
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRSTFTAMV 136
+ G PD+ TY TL+ +L + + E M S C D T+ AMV
Sbjct: 125 E-----VRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECR--PDLWTYNAMV 177
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
G + A +F E+V++ G P Y S+++ A D D V+
Sbjct: 178 SVHGRCGKAQD----AERMFRELVEK-----GFKPDAVTYNSLLYAFAKEGDADTVE 225
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 28/231 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R +K + I N +I + R+D A + + + G PD+++Y +LI + K ++
Sbjct: 233 RAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRIS 292
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
E++ D G K + F I YA G R + +++ +V + D
Sbjct: 293 DAGKVLEEMADAGLKPTLVTFSALICAYAK---GGRREEAVRTFSHMV-----ASGVKPD 344
Query: 129 RSTFTAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187
R + M+D + SG + K++ LY + N G P LY M+ LA
Sbjct: 345 RLAYLVMLDIIARSGDMRKLMALY----------QTMMNDGYRPDNALYQVMLAALAKGN 394
Query: 188 DYDIVKSPYR------RMWPD--STGTISPEVQEEAGHLLMEAALNDGQVD 230
+YD +++ + +M P S+ I E + LL +A L + D
Sbjct: 395 EYDEIEAVVQDMEVVCQMNPQLVSSILIKAECISQGAKLLKKACLQGHEPD 445
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 13 WKLNTIV-MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
W N +V ++ +++A+R+ E VEKG +PD+++YN L+ A K D
Sbjct: 171 WTYNAMVSVHGRCGKAQDAERM-----FRELVEKGFKPDAVTYNSLLYAFAKEGDADTVE 225
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E+L GF D TY T++ + L L + EM++ D T
Sbjct: 226 RVCEEL-------VRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRA-LGCTPDAVT 277
Query: 132 FTAMVDAL 139
+T ++D+L
Sbjct: 278 YTVLIDSL 285
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I +A+R +AY L E +E+GL+PD ++Y++LI + +K+D+ + Q
Sbjct: 503 NTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQ--- 559
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
C + PD+ + ++ G A+ + LEI +M+ N + D T +++ L
Sbjct: 560 ----CINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQ-VNCVPDLVTHNTIMEGL 614
Query: 140 LYSG 143
+G
Sbjct: 615 YKAG 618
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 19 VMNAVIEAS--REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
++NA IE++ REA+ +Q G+ P+ +YNILI K ++ +
Sbjct: 120 MLNAFIESNQWREAELFFTYFQT-----AGMSPNLQTYNILIKISCKKRQFEKGKGLLTW 174
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ +N G +PDI +Y TL+ + +L +E+ EM S + D + ++
Sbjct: 175 MFEN-------GLNPDILSYGTLINALAKSGNLLDAVELFDEM-SVRGVNPDVMCYNILI 226
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
D L G EI KR+ + ++P Y M++ L D +
Sbjct: 227 DGFLRKGDFVKA--------NEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMW 278
Query: 197 RRM 199
RM
Sbjct: 279 NRM 281
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKK-LDVTMPF 73
N N +I+ S + ++ ++ +L E GL PD LSY LI+A K+ LD F
Sbjct: 148 NLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELF 207
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E S G +PD+ Y L+ GF D EI + + ++ T+
Sbjct: 208 DEM--------SVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYN 259
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
M++ L G + E+ R+ N P + SM+H L+ +++ +
Sbjct: 260 IMINGLCKLGKLDES--------MEMWNRMKKNEK-SPDLFTFSSMIHGLSKAGNFNAAE 310
Query: 194 SPYRRMWPDSTGTISPEVQ 212
++ M +SP+V+
Sbjct: 311 KVFQEMIESG---LSPDVR 326
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL-DVTM 71
KLN+ V N++I A +++EA +L ++ K P +SYN +I+ K ++ D +
Sbjct: 461 KLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYL 520
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E L++ G PD+ TY+ L+ G
Sbjct: 521 SLKEMLEE--------GLKPDMITYSLLIDGL 544
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 19/154 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEA---YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
N + N +I+ + +++++A +Q+L E+GL+ DS +Y +LI+ K L+ +
Sbjct: 358 NIVSYNMLIQGLLDNKKVEQAICYWQLLH--ERGLKADSTTYGLLINGLCKNGYLNKALR 415
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E+ ++ G D F Y++++ G L+ +E++ +MK +R
Sbjct: 416 ILEEAENEGADL-------DTFAYSSMVHGLCKKGMLEQAVELIHQMKK------NRRKL 462
Query: 133 TAMVDALLYSGSIKVVGL-YALCIFGEIVKRVCS 165
+ V L +G ++ L A+ + E+ + C+
Sbjct: 463 NSHVFNSLINGYVRAFKLEEAISVLREMKSKDCA 496
>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A + +++A + +S+ + + PD SY ++SA + ++ F +++K
Sbjct: 353 NILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKV 412
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G F P+I TY TL+ G+ A D++ ++E V+E + +++ T ++DA
Sbjct: 413 DG-------FEPNIVTYGTLIKGYAKANDVEKMME-VYEKMRLSGIKANQTILTTIMDA- 463
Query: 140 LYSGSIKVVG 149
SG K G
Sbjct: 464 --SGRCKNFG 471
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDV 69
++ K ++ N++I+ + + LE + +G PD +SYN LI ++ + +
Sbjct: 579 KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSK 638
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+++++ GG PD+FTY ++L GF ++ E+V + DR
Sbjct: 639 AFGLVKKMEE-----EQGGLVPDVFTYNSILHGFCRQNQMKE-AEVVLRKMIERGVNPDR 692
Query: 130 STFTAMVDALL 140
ST+T M++ +
Sbjct: 693 STYTCMINGFV 703
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+ + N +I A ++EA++++ ++ KG P +YN +I+ K K + F
Sbjct: 269 DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVF 328
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E L+ G PD TY +LLM D+ ++ +M+S +++ D F+
Sbjct: 329 AEMLRS--------GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS-RDVVPDLVCFS 379
Query: 134 AMVD----------ALLYSGSIKVVGL 150
+M+ AL+Y S+K GL
Sbjct: 380 SMMSLFTRSGNLDKALMYFNSVKEAGL 406
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACI 62
NE++ ++ ++ + N ++ + + + EA ++ E E+ L PDS + ILI
Sbjct: 433 RNEML-QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHC 491
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K L M +++K+ + D+ TY TLL GF D+ + EI +M S
Sbjct: 492 KLGNLQNAMELFQKMKEKRIRL-------DVVTYNTLLDGFGKVGDIDTAKEIWADMVS- 543
Query: 123 CNLILDRSTFTAMVDALLYSGSI 145
++ +++ +V+AL G +
Sbjct: 544 KEILPTPISYSILVNALCSKGHL 566
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
++R +N +N ++ A + ++++ L V EKG+ PD ++YN LISA
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAK 107
++ + GF P ++TY T++ G +H K
Sbjct: 286 MEEAFELMNAMPGK-------GFSPGVYTYNTVINGLCKHGK 320
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 33 IDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF-NEQLKDNGQKCSSGGFH 90
+D+A SV E GL PD++ Y ILI + + V M NE L+ Q C+
Sbjct: 391 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQ---QGCAM---- 443
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
D+ TY T+L G K L ++ EM L D T T ++D G+++
Sbjct: 444 -DVVTYNTILHGLCKRKMLGEADKLFNEMTERA-LFPDSYTLTILIDGHCKLGNLQ 497
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 32 RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
R+DE Y+ E ++G EPD+++Y ILI+A K ++ D + +++ N KC P
Sbjct: 267 RLDEVYR--EMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEAN--KCM-----P 317
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
Y TL+ G + L L+ FE + T+ A+V + Y S+++ Y
Sbjct: 318 TPHIYCTLINGLGSERRLTEALQF-FERSKASGFTPEAPTYNAVVGS--YCQSMRMDDAY 374
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV 211
I E+ R C G+ P+ Y ++H L + K Y R++ + E
Sbjct: 375 R--IVDEM--RKC---GVGPQTRTYDIILHHL---IKARRTKEAY-RVFQGMSSEPGCEP 423
Query: 212 QEEAGHLLMEAALNDGQVDLAL 233
+++ N+ +VD+AL
Sbjct: 424 SVSTYEIVVRMFCNEERVDMAL 445
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 30 AQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
A+++ EA + E +EK GL+P +N L+ A K++ ++ +++KD
Sbjct: 192 ARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRK------- 244
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
F PDI +Y LL G+ ++L L E+ EMK D T+ +++A +
Sbjct: 245 FRPDIKSYTILLEGWGQEQNLLRLDEVYREMKD-EGFEPDAVTYGILINAHCKARRYDA- 302
Query: 149 GLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
A+ +F ++ C P PH+Y ++++ L +
Sbjct: 303 ---AVELFHKMEANKC-----MPTPHIYCTLINGLGS 331
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 81/173 (46%), Gaps = 17/173 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAV+ + ++ R+D+AY+I++ + K G+ P + +Y+I++ IK ++ E +
Sbjct: 358 NAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRT------KEAYRV 411
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
S G P + TY ++ F + + + L + EMK+ ++ F+ ++++L
Sbjct: 412 FQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKA-KGVLPGMHMFSTLINSL 470
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
Y + Y F E++ + G+ P ++ ++ L D+V
Sbjct: 471 CYENKLDEACKY----FHEML-----DMGIRPPAAMFSNLKQTLLDEGKQDMV 514
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
E + + + KL+ + +IE +A ++D+ + + S+ KG++P+ ++YN +IS
Sbjct: 414 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 473
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ L +++K++G PD TY TL+ D + E++ EM+
Sbjct: 474 LCSKRLLQEAYALLKKMKEDGP-------LPDSGTYNTLIRAHLRDGDKAASAELIREMR 526
Query: 121 SCCNLILDRSTFTAMVDALLYSGSI 145
S C + D ST +V +L+ G +
Sbjct: 527 S-CRFVGDASTI-GLVANMLHDGRL 549
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +++I R +A Q+L + +EK + P+ +++N LI A +K K
Sbjct: 218 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA---- 273
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+L D+ K S PDIFTY +L+ GF L ++ FE + D T+
Sbjct: 274 EKLHDDMIKRS---IDPDIFTYNSLINGFCMHDRLDKAKQM-FEFMVSKDCFPDLDTYNT 329
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ S ++ G + R S+ GL Y +++ L D D +
Sbjct: 330 LIKGFCKSKRVED---------GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 380
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+++M D + P++ + +L++ N+G+++ AL+
Sbjct: 381 VFKQMVSDG---VPPDIMTYS--ILLDGLCNNGKLEKALE 415
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 30/154 (19%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLK 78
N++I R+D+A Q+ E V K PD +YN LI K+K++ D T F E
Sbjct: 293 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 352
Query: 79 -----------------------DNGQKC----SSGGFHPDIFTYATLLMGFRHAKDLQS 111
DN QK S G PDI TY+ LL G + L+
Sbjct: 353 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 412
Query: 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
LE VF+ + LD +T M++ + +G +
Sbjct: 413 ALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 445
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 32 RIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
++D+A + + K P +N L+SA K KK D+ + K G+
Sbjct: 22 KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALL-----GKMMKLGYE 76
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
P I T ++LL G+ H K + + +V +M D TFT ++ L
Sbjct: 77 PSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPDTITFTTLIHGLFLHNKAS---- 131
Query: 151 YALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
A+ + +V+R C P Y +++ L R D D+ + +M
Sbjct: 132 EAVALVDRMVQRGCQ-----PNLVTYGVVVNGLCKRGDIDLAFNLLNKM 175
>gi|357115353|ref|XP_003559453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Brachypodium distachyon]
Length = 412
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
W V +A+R +RI EA ++ + EKGLEPD ++YN LI+ KT +++
Sbjct: 220 WYCRIGVGTGCRKATR--RRIYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAH 277
Query: 72 P-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
F+E LK G P+ TY + + + ++ +E + EM + + + S
Sbjct: 278 EVFDEMLKK--------GCAPNRVTYNSFVRYYSVVNEVDKAVEWMREMVARGHGVATSS 329
Query: 131 TFTAMVDALLYSGSI 145
T+T ++ +L SG +
Sbjct: 330 TYTPLIHSLYESGRV 344
>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
Length = 482
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+NT+ N +I A + +RIDEA Q+ E G P + +YN LI + ++L F
Sbjct: 99 VNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQF 158
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+L +G S TY L+ GF A + +E++ E+ + ++ + +
Sbjct: 159 YERLLSSGAGAS-------FITYNILVDGFCKADRVPEAVELLNELVARGGVVTS-APYN 210
Query: 134 AMVDALLYSGSIKVVGLY 151
++D L G I L+
Sbjct: 211 CIIDTLFKKGKIHEAELF 228
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 19/119 (15%)
Query: 33 IDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+DEA++I E +G P+ +S NILI+ K K+L E++ K P
Sbjct: 292 VDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAK-------P 344
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST-----FTAMVDALLYSGSI 145
D+ TY+T + G A + +++ C L+ T +TA++ L G +
Sbjct: 345 DVVTYSTFMDGLCRAHRVDQARQVL------CMLVDKGGTPDVVMYTALISGLCSLGRL 397
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
+FEE +V R+ K + + + ++ A R+D+A Q+L V+KG PD + Y LIS
Sbjct: 333 VFEE--VVKRQA-KPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALIS 389
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+LD E K + G P+ FT L+ GF A L E+ F+
Sbjct: 390 GLCSLGRLD------EARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEAREL-FQR 442
Query: 120 KSCCNLILDRSTFTAMVD 137
+ D TF+AM +
Sbjct: 443 FVERGVQPDCRTFSAMAN 460
>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 731
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 29 EAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+A RI+E +IL+ + + L +PD +Y +I + LD ++ +++K + K
Sbjct: 279 KAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMKRDEIK---- 334
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
PD+ Y TL++G ++ E+ EMK +++DR + +++ + G ++
Sbjct: 335 ---PDVMAYGTLVVGLCKDGRIERGYELFMEMKG-KQILIDREIYRVLIEGFVADGKVRS 390
Query: 148 V----------GLYA-LCIFGEIVKRVCS 165
G A L I+ ++K +CS
Sbjct: 391 ACDLWKDLVDSGYIADLGIYNAVIKGLCS 419
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++++ +A+R DEA ++++ +E+ G P ++YN LIS+ +K L+ +
Sbjct: 277 DKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALK 336
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLL 113
++++ G K PD+ TY TL+ G A + + +
Sbjct: 337 QEMEVKGMK-------PDVVTYTTLISGLDRAGKIDAAI 368
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 39/198 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I + + +++A + + +E KG++PD ++Y LIS + K+D +
Sbjct: 312 SVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEY 371
Query: 75 EQLKDNGQK---CS-------------------------SGGFHPDIFTYATLLMGFRHA 106
+++ NG K C+ S GF PDI T+ TLL F
Sbjct: 372 DEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQ- 430
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
L S + VF+ I +R T+ +++ S GL+ L + +I KR+
Sbjct: 431 NGLDSEVSGVFKEMKKAGYIPERDTYVSLIS------SYSRCGLFDLAM--QIYKRMM-E 481
Query: 167 PGLWPKPHLYVSMMHELA 184
G++P Y +++ LA
Sbjct: 482 AGIYPDVSTYNAVLSALA 499
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G+ PD +YN LIS C + +++K + GF PD T+ +LL +
Sbjct: 236 EHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMK-------ASGFEPDKVTFNSLLDVY 288
Query: 104 RHAKDLQSLLEIVFEMK 120
A+ +E++ EM+
Sbjct: 289 GKARRHDEAIEVIQEME 305
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I R EA Q+ + ++ G EPD +++N L+ K ++ D + ++++
Sbjct: 247 NTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMER 306
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G C P + TY +L+ + L+ + + EM+ + D T+T ++ L
Sbjct: 307 VG--CP-----PSVVTYNSLISSYVKDGLLEQAVALKQEME-VKGMKPDVVTYTTLISGL 358
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVC 164
+G I A+ + E+V+ C
Sbjct: 359 DRAGKIDA----AIVEYDEMVRNGC 379
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE +++++ +T+ ++I+ ++ RI + + E +++G PD ++YN LI
Sbjct: 360 LFEE---IHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLID 416
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A K LD + ++KD + P+++T+ LL G L++ LE ++
Sbjct: 417 ALCKNGHLDRAIALFNKMKDQAIR-------PNVYTFTILLDGLCKVGRLKNALEFFQDL 469
Query: 120 --KSCCNLILDRSTFTAMVDALLYSG 143
K C L+ T+T M++ L G
Sbjct: 470 LTKGYC---LNVRTYTVMINGLCKEG 492
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
+ ++L+ I +I + A ++L +E+ + P+ + Y+++I K +D
Sbjct: 157 QGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVD- 215
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ D + G PD+ TY+ L+ GF L ++++ EM N+ D
Sbjct: 216 ------EAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEM-VLENINPDI 268
Query: 130 STFTAMVDALLYSGSIK 146
T+T +VDAL G +K
Sbjct: 269 YTYTILVDALCKEGKVK 285
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ +A+R++E ++ E ++GL ++++YN LI + D+
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ S G PDI TY+ LL G L+ L +VFE + D T+
Sbjct: 454 KKM-------VSDGVPPDIITYSILLDGLCKYGKLEKAL-VVFEYLQKSKMEPDIYTYNI 505
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
M++ + +G ++ G C S G+ P +Y +M+ + + +
Sbjct: 506 MIEGMCKAGKVE-DGWDLFCSL--------SLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 195 PYRRMWPDST 204
+R M D T
Sbjct: 557 LFREMKEDGT 566
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMP-F 73
+ + AV+ + ID A +L+ +EKG +E D + YN +I K K +D F
Sbjct: 219 DLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALF 278
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATL---LMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
N K + G PD+FTY +L L + D LL + E K N++
Sbjct: 279 N--------KMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVV---- 326
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
TF+A++DA + G + + A ++ E++KR
Sbjct: 327 TFSALIDAFVKEGKL----VEAEKLYDEMIKR 354
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ EA ++ E +++ ++PD +Y+ LI+ +LD
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 383
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + S P++ TY TL+ GF AK ++ +E+ EM S L+ + T+
Sbjct: 384 ELM-------ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYNT 435
Query: 135 MVDALLYSG 143
++ L +G
Sbjct: 436 LIQGLFQAG 444
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + + + + N +IE +A ++++ + + S+ KG++P+ + Y +IS C K
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +D G PD Y TL+ D + E++ EM+S C
Sbjct: 549 GLKEEADALFREMKED--------GTLPDSGCYNTLIRARLRDGDKAASAELIKEMRS-C 599
Query: 124 NLILDRSTFTAMVDALLYSGSIK 146
+ D ST + MV +L+ G ++
Sbjct: 600 GFVGDASTIS-MVINMLHDGRLE 621
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 42/209 (20%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD----------- 79
++D+A + E V+ P + +N L+SA K KK D+ + E++++
Sbjct: 60 KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYN 119
Query: 80 --------NGQ---------KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
Q K G+ PDI T ++LL G+ H+K + + +V +M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE- 178
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
D TF ++ L A+ + ++V+R C P Y ++++
Sbjct: 179 MGYKPDTVTFNTLIHGLFLHNKAS----EAVALVDQMVQRGCQ-----PDLVTYGAVVNG 229
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEV 211
L R D D+ S ++M G I +V
Sbjct: 230 LCKRGDIDLALSLLKKM---EKGKIEADV 255
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +++++ ++RI +A +++ VE G +PD++++N LI K +
Sbjct: 146 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAV 205
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+Q+ G C PD+ TY ++ G D+ L ++ +M+
Sbjct: 206 ALVDQMVQRG--C-----QPDLVTYGAVVNGLCKRGDIDLALSLLKKME 247
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 38/218 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++++ +A+R DEA ++++ +E+ G P ++YN LIS+ +K L+ +
Sbjct: 259 DKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALK 318
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC-------NLI 126
++++ G K PD+ TY TL+ G A + + + EM ++ C N +
Sbjct: 319 QEMEVKGMK-------PDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNAL 371
Query: 127 LD----RSTFTAMV---DALLYSGSIKVVGLYA--LCIFGEI--------VKRVCSNPGL 169
+ R F M+ D +G + + + L +FG+ V + G
Sbjct: 372 IKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY 431
Query: 170 WPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPD 202
P+ YVS++ + +D+ Y+RM +PD
Sbjct: 432 IPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPD 469
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 44 EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E G+ PD +YN LIS C + +++K + GF PD T+ +LL +
Sbjct: 218 EHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMK-------ASGFEPDKVTFNSLLDVY 270
Query: 104 RHAKDLQSLLEIVFEMK 120
A+ +E++ EM+
Sbjct: 271 GKARRHDEAIEVIQEME 287
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I R EA Q+ + ++ G EPD +++N L+ K ++ D + ++++
Sbjct: 229 NTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMER 288
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G C P + TY +L+ + L+ + + EM+ + D T+T ++ L
Sbjct: 289 VG--CP-----PSVVTYNSLISSYVKDGLLEQAVALKQEME-VKGMKPDVVTYTTLISGL 340
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVC 164
+G I A+ + E+V+ C
Sbjct: 341 DRAGKIDA----AIVEYDEMVRNGC 361
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 18/196 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E++ R+ K N+ + ++I ++ EA + E + +G+ PD++ Y LI K
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ F ++ S PD+ TY ++ GF D+ ++ EM C
Sbjct: 365 GDIRAASKFFYEM-------HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM-FCKG 416
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L D TFT +++ +G +K A + +++ CS P Y +++ L
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKD----AFRVHNHMIQAGCS-----PNVVTYTTLIDGLC 467
Query: 185 ARVDYDIVKSPYRRMW 200
D D MW
Sbjct: 468 KEGDLDSANELLHEMW 483
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 30/163 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N VI + RI EA+ +L +E KG PD +SY+ +++ + +LD
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 75 EQLKDNGQKCSS----------------------------GGFHPDIFTYATLLMGFRHA 106
E +K G K +S G PD Y TL+ GF
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
D+++ + +EM S ++ D T+TA++ G + G
Sbjct: 365 GDIRAASKFFYEMHS-RDITPDVLTYTAIISGFCQIGDMVEAG 406
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+++ +I +A + +A+++ ++ G P+ ++Y LI K LD N
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA---N 476
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L + + G P+IFTY +++ G + +++ +++V E ++ L D T+T
Sbjct: 477 ELLHEMWKI----GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEA-AGLNADTVTYTT 531
Query: 135 MVDALLYSGSI 145
++DA SG +
Sbjct: 532 LMDAYCKSGEM 542
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+I + + EA ++ E KGLEPDS+++ LI+ K + +
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G CS P++ TY TL+ G DL S E++ EM L + T+ +
Sbjct: 445 NHMIQAG--CS-----PNVVTYTTLIDGLCKEGDLDSANELLHEMWK-IGLQPNIFTYNS 496
Query: 135 MVDALLYSGSI----KVVG 149
+V+ L SG+I K+VG
Sbjct: 497 IVNGLCKSGNIEEAVKLVG 515
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+F+E E N + N + N V+ A + EA Q+ +++ +G PDS++YN +I
Sbjct: 511 LFQEIEARNLQP---NLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIH 567
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG---FRHAKDLQSLLEIV 116
A K K+ + E++ S +HPDI TY +L+ G + + ++ + L+
Sbjct: 568 AYCKQGKVKIAAQLVERVS------SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKA 621
Query: 117 FEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
C N + D+L + G I ++
Sbjct: 622 INQGICPNFATWNALVRCFFDSLGHMGPIHIL 653
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +++A + R+D A+++ +E KG PD+++Y ++S+ K K+D
Sbjct: 178 NVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL- 236
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+G F P + Y L+ G ++ ++++ EM + + +++
Sbjct: 237 -----------AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMD-NGVDPNVVSYSC 284
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
++++L SG++++ A +F ++ R C
Sbjct: 285 IINSLCVSGNVEL----AFALFAQMFLRGC 310
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
++ G EP+ ++YN LI L+ + +Q++ G P++ TY+ L+ G
Sbjct: 341 IQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQ-------RSGCLPNVTTYSILIDG 393
Query: 103 FRHAKDLQSLLEIVFEMKS-CC--NLILDRSTFTAMVDAL 139
F + DL E M S C N++ T+T MVD L
Sbjct: 394 FAKSGDLVGASETWNRMISHGCRPNVV----TYTCMVDVL 429
>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A + +++A + +S+ + + PD SY ++SA + ++ F +++K
Sbjct: 360 NILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKV 419
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G F P+I TY TL+ G+ A D++ ++E V+E + +++ T ++DA
Sbjct: 420 DG-------FEPNIVTYGTLIKGYAKANDVEKMME-VYEKMRLSGIKANQTILTTIMDA- 470
Query: 140 LYSGSIKVVG 149
SG K G
Sbjct: 471 --SGRCKNFG 478
>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
Length = 484
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 29/151 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKL----DVT 70
N MN ++ A R++EA++++ ++ G++PD+++YN L A ++ D+
Sbjct: 169 NLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLI 228
Query: 71 MPF-NEQLKDNGQK--------CSSG---------------GFHPDIFTYATLLMGFRHA 106
N +LK N + C +G G HPD+ + TLL G+
Sbjct: 229 ADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAFNTLLKGYSQE 288
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
D Q LE+V ++ + + D +T++ +++
Sbjct: 289 NDQQLKLEMVLDLMAANGVRPDVTTYSTIMN 319
>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Glycine max]
Length = 587
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N+++ + RI +A ++L E E+ L+ D+++ N LI+A K L + F +
Sbjct: 335 VTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNK 394
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + G K PD FTY L+ GF +L+S E++F M
Sbjct: 395 MLEAGLK-------PDPFTYKALIHGFCKTNELESAKELMFSM 430
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 24/164 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N + N + A ++ ++ A Q+L ++ KG+ D +YN L+S C K +
Sbjct: 195 NIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQ 254
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
N ++ G + DI +Y +L+ GF ++ + + E+K N + T+T
Sbjct: 255 NRMERE--------GINLDIVSYNSLIYGFCKEGRMREAMRMFSEIK---NATPNHVTYT 303
Query: 134 AMVD----------ALLYSGSIKVVGLY-ALCIFGEIVKRVCSN 166
++D AL ++ GLY + + I++++C +
Sbjct: 304 TLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQD 347
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
NE+ R+ + + I N +I A + + A + +E GL+PD +Y LI K
Sbjct: 358 NEMSERK-LQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCK 416
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
T +L+ + D GF P TY+ ++ G+ ++ ++L + E S
Sbjct: 417 TNELESAKELMFSMLD-------AGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLS-R 468
Query: 124 NLILDRSTFTAMVDA 138
+ LD S + A++ +
Sbjct: 469 GICLDVSVYRALIRS 483
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 18/190 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ +A+R++E ++ E ++GL ++++YN LI + D+
Sbjct: 378 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI- 436
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K S G PDI TY+ LL G L+ L +VFE + D T+
Sbjct: 437 ------FKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL-VVFEYLQKSKMEPDIYTYNI 489
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
M++ + +G ++ G C S G+ P +Y +M+ + + +
Sbjct: 490 MIEGMCKAGKVE-DGWDLFCSL--------SLKGVKPNVIIYTTMISGFCRKGLKEEADA 540
Query: 195 PYRRMWPDST 204
+R M D T
Sbjct: 541 LFREMKEDGT 550
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ EA ++ E +++ ++PD +Y+ LI+ +LD
Sbjct: 308 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD------ 361
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P++ TY TL+ GF AK ++ +E+ EM S L+ + T+
Sbjct: 362 -EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYNT 419
Query: 135 MVDALLYSG 143
++ L +G
Sbjct: 420 LIQGLFQAG 428
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + + + + N +IE +A ++++ + + S+ KG++P+ + Y +IS C K
Sbjct: 473 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 532
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +K++G +SG TY TL+ D + E++ EM+S C
Sbjct: 533 GLKEEADALFRE-MKEDGTLPNSG-------TYNTLIRARLRDGDKAASAELIKEMRS-C 583
Query: 124 NLILDRSTFTAMVDALLYSGSIK 146
+ D ST + MV +L+ G ++
Sbjct: 584 GFVGDASTIS-MVINMLHDGRLE 605
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 18/180 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N ++ A + + D + E ++ + D SYNILI+ + +L + +
Sbjct: 68 NKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVL----- 122
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
K G+ PDI T ++LL G+ H K + + +V +M +++ T + L
Sbjct: 123 --GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM-----FVMEYQPNTVTFNTL 175
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
++ + A+ + +V R C P Y ++++ L R D D+ S ++M
Sbjct: 176 IHGLFLHNKASEAVALIDRMVARGCQ-----PDLFTYGTVVNGLCKRGDIDLALSLLKKM 230
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 106/234 (45%), Gaps = 34/234 (14%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +++++ +RI EA +++ + +P+++++N LI K +
Sbjct: 130 YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAV 189
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ + G PD+FTY T++ G D+ L ++ +M+ + D
Sbjct: 190 ALIDRM-------VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVI 241
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL-------- 183
+T ++DAL ++ AL +F E+ N G+ P Y S++ L
Sbjct: 242 YTTIIDALCNYKNVND----ALNLFTEM-----DNKGIRPNVVTYNSLIRCLCNYGRWSD 292
Query: 184 AARVDYDIVKSPYRRMWPDS---TGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
A+R+ D+++ R++ P+ + I V+E G L+ L D + ++D
Sbjct: 293 ASRLLSDMIE---RKINPNVVTFSALIDAFVKE--GKLVEAEKLYDEMIKRSID 341
>gi|357486943|ref|XP_003613759.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515094|gb|AES96717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 733
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 6 EIVNREHWKLN-TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKT 64
+V+R++ LN +V++ + + ++ EA + + KGL L+YN LI+ +
Sbjct: 219 RMVSRKNCGLNGAVVVSTLTHWLCKKGKVLEARNMFDEFGKGLVASLLTYNTLIAGLCEG 278
Query: 65 KKL-DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMK 120
KL + ++E ++ G P+ FTY L+ GF R+AK+ +LE + E +
Sbjct: 279 GKLCEAARLWDEMVEK--------GVAPNAFTYNMLIKGFCKVRNAKEGIRVLEEMLENR 330
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIK 146
N +ST+T ++D +L SG +K
Sbjct: 331 CFPN----KSTYTILIDGILLSGGMK 352
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ ++++ R+ EA ++ + + +G PD LSYNILI+ C K +++D
Sbjct: 44 NTVTYSSLMNGYLLQNRVFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIF 103
Query: 75 EQLKDNGQKCSS-------GGF----------------HPDIFTYATLLMGFRHAKDLQS 111
+++ G ++ GGF PD+ TY+ L G L
Sbjct: 104 DEMSFRGLIPNTATYNTLLGGFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQ 163
Query: 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
LE+ EM++ L D + ++DA+ SG ++
Sbjct: 164 ALELFREMQN-NYLNPDLVIYNILIDAMCKSGKLE 197
>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g12700, mitochondrial-like
[Glycine max]
Length = 555
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + NA++E + + EA ++ V++GLEPD L+YN+LI+ K +D M
Sbjct: 297 KPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMV 356
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS-- 130
+++ +C + P++ TY +L+ G + + E+V EM DR
Sbjct: 357 LFKEI-----RCKN--LVPNLATYNSLIDGLCKLGRMSCVQELVDEM-------CDRGQS 402
Query: 131 ----TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
T+ +DA S + A+ +F +IV+ G+WP ++Y
Sbjct: 403 PDIVTYNIFLDAFCKSKPYE----KAISLFRQIVQ------GIWPDFYMY 442
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
F ++ E + +A+I + R+DE + E +GL P+ +++ LI
Sbjct: 303 FRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDG 362
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K K+D+ + N Q + G PD+ TY L+ G DL+ +V EM
Sbjct: 363 QCKGGKVDLAL-------KNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMT 415
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIK 146
+ L D+ TFT ++D G ++
Sbjct: 416 A-SGLKPDKITFTTLIDGCCKDGDME 440
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + ++D A + + + +G+ PD ++YN LI+ K L
Sbjct: 352 NGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLV 411
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ ++ G PD T+ TL+ G D++S LEI M + LD FTA
Sbjct: 412 NEM-------TASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVE-EGIELDDVAFTA 463
Query: 135 MVDALLYSGSIKVVG 149
++ L G + G
Sbjct: 464 LISGLCREGRVHDAG 478
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N ++ +A + A + + + K GL P +S+N LIS C K+ ++ E +
Sbjct: 251 FNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVE------EGFR 304
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
G S G PD+FT++ L+ G L ++F+ L+ + TFT ++D
Sbjct: 305 LKGVM-ESEGVCPDVFTFSALINGLCKEGRLDE-GSLLFDEMCGRGLVPNGVTFTTLIDG 362
Query: 139 LLYSGSI 145
G +
Sbjct: 363 QCKGGKV 369
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R ++N I+ N ++E EA+R DEA IL + E G PD SY+IL+ + K
Sbjct: 139 RTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKS 198
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + G CS P++ Y T++ GF D+ ++ EM
Sbjct: 199 GQADDLLRMMAEGGAVCS-----PNVVAYNTVIDGFFKEGDVNKACDLFKEM 245
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+A +D+A I E + G++PD ++Y +I+A + K+D M Q+ D
Sbjct: 398 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMID 457
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PD + Y L+ GF L E++ E+ + + LD F+++++ L
Sbjct: 458 Q-------GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN-NGMHLDIVFFSSIINNL 509
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G + + A IF V N GL P +Y +M
Sbjct: 510 CKLGRV----MDAQNIFDLTV-----NVGLHPDAVVYSMLM 541
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N VI+ + +++A + E V++G+ PD ++YN ++ A K + +D F
Sbjct: 218 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 277
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ + P+ +TY L+ G+ + + + EM+ +++ D T +
Sbjct: 278 RQMVNK-------RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLSM 329
Query: 135 MVDALLYSGSIK 146
++ +L G IK
Sbjct: 330 LMGSLCKYGKIK 341
>gi|302761110|ref|XP_002963977.1| hypothetical protein SELMODRAFT_82002 [Selaginella moellendorffii]
gi|300167706|gb|EFJ34310.1| hypothetical protein SELMODRAFT_82002 [Selaginella moellendorffii]
Length = 716
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NT+ N +I+ +++D+ QIL ++ + ++PD+ ++N L++A + +L +
Sbjct: 262 KANTLTFNVMIKLYARVEKLDKLEQILHTMADADVDPDATTFNSLVAAFVGLGELSLAES 321
Query: 73 FNEQLKDNGQKCS------------SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ L+ G+ + S F PD+ TY TL+ G+ + ++++ M+
Sbjct: 322 IVQSLRGEGEHQTRVPALLPKLREHSAKFQPDVRTYTTLMKGYVQHNRVSDAMQLLVAMQ 381
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIK 146
T AM + + ++ +I+
Sbjct: 382 -------QEKTSAAMPNEVTFTTAIR 400
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ NA++ E ++E +++L+ +EKGL D +SYN LI C K K++
Sbjct: 500 NTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLK 559
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E++ F PD +TY L+ G + + ++ E K
Sbjct: 560 EEMVQQ-------EFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAK 598
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66
++ E +L+++V N +I A + EA+++ ++++ +G+ P +Y+ LI +
Sbjct: 632 LDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGR 691
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+D E++++ G P++F Y L+ G + + I+ EM S +
Sbjct: 692 VDEAKEIFEEMRNEG-------LLPNVFCYTALIGGHCKLGQMDIVGSILLEMSS-NGIR 743
Query: 127 LDRSTFTAMVDALLYSGSIK 146
++ T+T M+D G++K
Sbjct: 744 PNKITYTIMIDGYCKLGNMK 763
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+F+E E N + N + N V+ A + EA Q+ +++ +G PDS++YN +I
Sbjct: 511 LFQEIEARNLQP---NLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIH 567
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG---FRHAKDLQSLLEIV 116
A K K+ + E++ S +HPDI TY +L+ G + + ++ + L+
Sbjct: 568 AYCKQGKVKIAAQLVERVS------SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKA 621
Query: 117 FEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
C N + D+L + G I ++
Sbjct: 622 INQGICPNFATWNALVRCFFDSLGHMGPIHIL 653
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +++A + R+D A+++ +E KG PD+++Y ++S+ K K+D
Sbjct: 178 NVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL- 236
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+G F P + Y L+ G ++ ++++ EM + + +++
Sbjct: 237 -----------AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMD-NGVDPNVVSYSC 284
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
++++L SG++++ A +F ++ R C
Sbjct: 285 IINSLCVSGNVEL----AFALFAQMFLRGC 310
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
++ G EP+ ++YN LI L+ + +Q++ G P++ TY+ L+ G
Sbjct: 341 IQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQ-------RSGCLPNVTTYSILIDG 393
Query: 103 FRHAKDLQSLLEIVFEMKS-CC--NLILDRSTFTAMVDAL 139
F + DL E M S C N++ T+T MVD L
Sbjct: 394 FAKSGDLVGASETWNRMISHGCRPNVV----TYTCMVDVL 429
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 34/227 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T MN +++ + + + A + + + + PD S+N L+ K + L + E
Sbjct: 1555 DTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTME 1614
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFT 133
++K + GF P + TY +L+ + KD Q++ ++ EM+ C ++ T+T
Sbjct: 1615 EMKQH-------GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVV---TYT 1664
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD--Y 189
++ AL +G + AL F ++ G+ P Y S+++ L A R++ Y
Sbjct: 1665 ILMHALGKAGRTR----EALDTFDKL-----KEDGVAPDASFYNSLIYILGRAGRLEDAY 1715
Query: 190 DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
+V+ T I+P V + L+ AA + Q + AL L
Sbjct: 1716 SVVEEM-------RTTGIAPNVT--TFNTLISAACDHSQAENALKLL 1753
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T V NA+I AS A +D AY + + G PD +YN L+ + +D +
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLV 246
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
Q++ G P++FTY L+ GF +A ++ ++ +MK
Sbjct: 247 RQMEGEG-------IRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMK 285
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V KGL +SYN++I +K +D ++++D GF P++ T+ TL+ G
Sbjct: 425 VLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK-------GFLPNLVTFNTLISG 477
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+ ++ + ++V +M + D TFT+++D L + + A F E+ +
Sbjct: 478 YSKLGNVHN-AKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLD----DAFVCFEEMAEW 532
Query: 163 VCSNPGLWPKPHLYVSMMHELAA 185
G+ P Y +MH L +
Sbjct: 533 -----GVRPNAQTYNVLMHTLCS 550
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N VI+ +A +D+A +I++ ++ KG P+ +++N LIS K + + L +
Sbjct: 437 NMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLME 496
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ GF PDI T+ +L+ G + L + FE + + + T+ ++ L
Sbjct: 497 H-------GFMPDIITFTSLIDGLCNTHQLDDAF-VCFEEMAEWGVRPNAQTYNVLMHTL 548
Query: 140 LYSGSI 145
+G +
Sbjct: 549 CSAGHV 554
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 36/209 (17%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDV---------- 69
N++I ++DEA QIL+ V KG PD ++YN LI+ KTK++D
Sbjct: 283 NSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQ 342
Query: 70 ------TMPFNEQLK--------DNGQKC-SSGGFHPDIFTYATLLMGFRHAKDLQSLLE 114
T+ FN ++ D Q+ S G P+I TY+ LL G + ++ L
Sbjct: 343 RGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKAL- 401
Query: 115 IVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174
++FE + LD +T+ ++ + G+++ A +F + S GL P
Sbjct: 402 VLFESMQKSEMELDITTYNIVIHGMCMIGNVE----DAWDLFCSL-----SFKGLEPDVV 452
Query: 175 LYVSMMHELAARVDYDIVKSPYRRMWPDS 203
Y +M+ + +D YR+M D
Sbjct: 453 TYTTMISGFCRKRLWDKADFLYRKMQEDG 481
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R ++N I+ N ++E EA+R DEA IL + E G PD SY+IL+ + K
Sbjct: 142 RTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKS 201
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + G CS P++ Y T++ GF D+ ++ EM
Sbjct: 202 GQADDLLRMMAEGGAVCS-----PNVVAYNTVIDGFFKEGDVNKACDLFKEM 248
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+A +D+A I E + G++PD ++Y +I+A + K+D M Q+ D
Sbjct: 401 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMID 460
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PD + Y L+ GF L E++ E+ + + LD F+++++ L
Sbjct: 461 Q-------GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN-NGMHLDIVFFSSIINNL 512
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G + + A IF V N GL P +Y +M
Sbjct: 513 CKLGRV----MDAQNIFDLTV-----NVGLHPDAVVYNMLM 544
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N VI+ + +++A + E V++G+ PD ++YN ++ A K + +D F
Sbjct: 221 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 280
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ + P+ +TY L+ G+ + + + EM+ +++ D T +
Sbjct: 281 RQMVNK-------RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLSM 332
Query: 135 MVDALLYSGSIK 146
++ +L G IK
Sbjct: 333 LMGSLCKYGKIK 344
>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
Length = 466
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ N + +I + + +D A ++LE +EK G EPD+++YNI+I++ + ++D
Sbjct: 137 RKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVD 196
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
D + +S PD + +L GF A+ E++ +M + C LI
Sbjct: 197 ----------DALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLI- 245
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187
TF ++D L +G + YA +F ++ + C+ P Y S+++ + +
Sbjct: 246 -EMTFNILIDMLCQNGLVN----YATQVFEQMPRYRCT-----PDIVTYSSLLNGFSEQG 295
Query: 188 DYDIVKSPYRRM--WPDS-------TGTISPEVQEEAGHLLMEAALND 226
++ +R M PD G E+AG L+ E D
Sbjct: 296 LVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKD 343
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 21/127 (16%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAV++ A R ++A +++ E V K P+ +++NILI++ + +D + EQ+ +
Sbjct: 317 NAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPN 376
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PDIFTY L+ GF L L+++ ST + DA+
Sbjct: 377 YGST-------PDIFTYNALINGFSEQGRLDDALKLL-------------STMSCKPDAI 416
Query: 140 LYSGSIK 146
Y+ ++K
Sbjct: 417 SYNSTLK 423
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + + +D A ++LE + G PD +YN LI+ F+
Sbjct: 347 NEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALING------------FS 394
Query: 75 EQ--LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
EQ L D + S+ PD +Y + L G A+ Q E+V EM
Sbjct: 395 EQGRLDDALKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEM 441
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 18/190 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ +A+R++E ++ E ++GL ++++YN LI + D+
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI- 452
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K S G PDI TY+ LL G L+ L +VFE + D T+
Sbjct: 453 ------FKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL-VVFEYLQKSKMEPDIYTYNI 505
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
M++ + +G ++ G C S G+ P +Y +M+ + + +
Sbjct: 506 MIEGMCKAGKVE-DGWDLFCSL--------SLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 195 PYRRMWPDST 204
+R M D T
Sbjct: 557 LFREMKEDGT 566
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ EA ++ E +++ ++PD +Y+ LI+ +LD
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD------ 377
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P++ TY TL+ GF AK ++ +E+ EM S L+ + T+
Sbjct: 378 -EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYNT 435
Query: 135 MVDALLYSG 143
++ L +G
Sbjct: 436 LIQGLFQAG 444
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + + + + N +IE +A ++++ + + S+ KG++P+ + Y +IS C K
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +D G P+ TY TL+ D + E++ EM+S C
Sbjct: 549 GLKEEADALFREMKED--------GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS-C 599
Query: 124 NLILDRSTFTAMVDALLYSGSIK 146
+ D ST + MV +L+ G ++
Sbjct: 600 GFVGDASTIS-MVINMLHDGRLE 621
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N ++ A + + D + E ++ + D SYNILI+ + +L + + ++
Sbjct: 84 NKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM- 142
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G+ PDI T ++LL G+ H K + + +V +M +++ T + L
Sbjct: 143 ------KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM-----FVMEYQPNTVTFNTL 191
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
++ + A+ + +V R C P Y ++++ L R D D+ S ++M
Sbjct: 192 IHGLFLHNKASEAVALIDRMVARGCQ-----PDLFTYGTVVNGLCKRGDIDLALSLLKKM 246
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 90/203 (44%), Gaps = 29/203 (14%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +++++ +RI EA +++ + +P+++++N LI K +
Sbjct: 146 YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAV 205
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ + G PD+FTY T++ G D+ L ++ +M+ + D
Sbjct: 206 ALIDRM-------VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVI 257
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+T ++DAL ++ AL +F E+ N G+ P Y S++ L
Sbjct: 258 YTTIIDALCNYKNVND----ALNLFTEM-----DNKGIRPNVVTYNSLIRCLC------- 301
Query: 192 VKSPYRRMWPDSTGTISPEVQEE 214
Y R W D++ +S ++ +
Sbjct: 302 ---NYGR-WSDASRLLSDMIERK 320
>gi|42561931|ref|NP_172654.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75104249|sp|Q5BIV3.1|PPR35_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11900
gi|60543317|gb|AAX22256.1| At1g11900 [Arabidopsis thaliana]
gi|332190689|gb|AEE28810.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 367
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
IVMN +I A E ++ID+ IL+ +++ +PD ++YN ++ + ++ +
Sbjct: 178 IVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRAGLVNEILGVLST 237
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K++ CS +I TY T+L G R A L I EM C + D ++TA++
Sbjct: 238 MKED---CS---VSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQ-CGIEPDLLSYTAVI 290
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY 189
D+L SG++K +L +F E+ +R + P ++Y +++ L D+
Sbjct: 291 DSLGRSGNVK----ESLRLFDEMKQR-----QIRPSVYVYRALIDCLKKSGDF 334
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N I N V+ R+A R D I E V+ G+EPD LSY +I + ++ + ++
Sbjct: 246 VNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLSYTAVIDSLGRSGNVKESLRL 305
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+++K P ++ Y L+ + + D QS L++ E+K+ +L L
Sbjct: 306 FDEMKQR-------QIRPSVYVYRALIDCLKKSGDFQSALQLSDELKNTSSLDL 352
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 34/136 (25%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
W NT+V E +IDEA ++ + +E L PD ++YN LI C + + D
Sbjct: 317 WTYNTMVRGLCDEG-----KIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAF 371
Query: 72 PFNEQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGF 103
E++K G K C+ G GF PD FTY T++ G+
Sbjct: 372 KLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGY 431
Query: 104 RHAKDLQSLLEIVFEM 119
A + +++ EM
Sbjct: 432 CKAGKMAEAYKMMDEM 447
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 30/159 (18%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTK------- 65
K N + N +I+ +IDEA ++ + VE G PD +YN +I+ K
Sbjct: 383 KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYK 442
Query: 66 ----------KLDV--------TMPFNEQLKDN---GQKCSSGGFHPDIFTYATLLMGFR 104
KLD TM +QL D K G+ D TY TL+MG+
Sbjct: 443 MMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYF 502
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
+ L++ EMK ++ T+ ++ L SG
Sbjct: 503 KDEQADRALKLWEEMKE-TGIVATIITYNTIIRGLCLSG 540
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I +EA +++ + E G PD+++YN +++A K +L
Sbjct: 210 NVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLT------ 263
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q++D + + G P+ TY L+ G+ K L+ E++ E+ + ++ D T+
Sbjct: 264 -QVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVI-ELMTGKGMLPDVWTYNT 321
Query: 135 MVDALLYSGSI 145
MV L G I
Sbjct: 322 MVRGLCDEGKI 332
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
++T+ N +I + + +R+++A+ ++ +E K LEPD +YN +++ K + +
Sbjct: 629 MDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKL 688
Query: 74 NEQLKDNGQKCSSGGFHPDIFT 95
+ + GQ+ + P++ T
Sbjct: 689 ALKFAEKGQQVKTQDTSPELGT 710
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R ++N I+ N ++E EA+R DEA IL + E G PD SY+IL+ + K
Sbjct: 152 RTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKS 211
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + G CS P++ Y T++ GF D+ ++ EM
Sbjct: 212 GQADDLLRMMAEGGAVCS-----PNVVAYNTVIDGFFKEGDVNKACDLFKEM 258
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+A +D+A I E + G++PD ++Y +I+A + K+D M Q+ D
Sbjct: 411 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMID 470
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PD + Y L+ GF L E++ E+ + + LD F+++++ L
Sbjct: 471 Q-------GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN-NGMHLDIVFFSSIINNL 522
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G + + A IF V N GL P +Y +M
Sbjct: 523 CKLGRV----MDAQNIFDLTV-----NVGLHPDAVVYSMLM 554
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N VI+ + +++A + E V++G+ PD ++YN ++ A K + +D F
Sbjct: 231 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 290
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ + P+ +TY L+ G+ + + + EM+ +++ D T +
Sbjct: 291 RQMVNK-------RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLSM 342
Query: 135 MVDALLYSGSIK 146
++ +L G IK
Sbjct: 343 LMGSLCKYGKIK 354
>gi|294945390|ref|XP_002784656.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239897841|gb|EER16452.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 692
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL 67
R+ + + I+ N++++ + R+D+A Q+L+ + G+ P + + +IL+ + ++L
Sbjct: 464 GRKKFAPDEIMYNSLLDGCAKQHRVDQALQLLDEMRANGVAPSNYTLSILVKLLGRARRL 523
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
E L ++ GF ++ Y L+ H K LQ +++ M +
Sbjct: 524 LEAFNMVEDLS------TAYGFRANVHVYTCLIQACVHNKQLQRAMKLHDAMIQEYRVDP 577
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174
D+ T+ + +YS +++ C +G P PH
Sbjct: 578 DQKTYAVLARGCIYSNQLEMAAKVVRCAYG------------LPSPH 612
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+F+ + + LNT+ N +++A + ++ I + E+G+EPD ++Y+ ++
Sbjct: 379 VFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVVK 438
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+D + ++ F PD Y +LL G + L+++ EM
Sbjct: 439 GYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLLDEM 498
Query: 120 KS 121
++
Sbjct: 499 RA 500
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A+ + +D ++ E ++ D +S+N ++ +K + Q +
Sbjct: 114 NCLLDAAVQCDDMDVVGKVFEEMKDAGRLDVVSFNTVMKGHLKQGNM-------RQARKT 166
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++ GF P++ TY LL KD + + E+V EMK+
Sbjct: 167 MREMQEAGFPPNVITYNELLHSMVQGKDKRGIWEVVEEMKA 207
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +++A + + +E VE+ E D + ++ +I ACI+ KLD+ +
Sbjct: 213 NKVTCSILLKALTSHSHSSDVVRTMELVERMRGEMDEVLFSSVIEACIRIGKLDI---LS 269
Query: 75 EQLKDNGQKCSSGGFHPDIF--TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+L+ Q + GG + TY +++ + HAKDL+ + + EM+ + T
Sbjct: 270 NKLQ---QYTAGGGLVKGLTAPTYGSMIKAYGHAKDLRRVWSLWSEMRQRA-VKPTAITL 325
Query: 133 TAMVDALL 140
MVDAL+
Sbjct: 326 GCMVDALV 333
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+++ +DEA ++ ++ V KG P+ SYNILI+ + +++D M
Sbjct: 356 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 415
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ+ S G D TY TL+ G H LQ + + EM + I D T+
Sbjct: 416 EQM-------SLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVA-SGQIPDLVTYRI 467
Query: 135 MVDAL 139
++D L
Sbjct: 468 LLDYL 472
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQL 77
+N +I + +R+ A+ +L + K G +PD+ ++N LI C++ K + F++ +
Sbjct: 150 LNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 209
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC-CNLILDRSTFTA 134
+ GF PD+ TY TL+ G + + + ++ M K+C N+I +
Sbjct: 210 GE--------GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVI----AYNT 257
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++D+L + A +F E++ + G+ P Y S++H L ++ V +
Sbjct: 258 IIDSLCKDRQVT----EAFNLFSEMITK-----GISPDIFTYNSLIHALCNLCEWKHVTT 308
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
M I P V + +++A +G + +A D + I R
Sbjct: 309 LLNEMV---NSKIMPNVVVFS--TVVDALCKEGMIAIAHDVVDMMIKR 351
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 81/158 (51%), Gaps = 16/158 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CI 62
NE+VN + N +V + V++A + I A+ +++ +++G+EPD ++Y L+ C+
Sbjct: 311 NEMVNSKIMP-NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL 369
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+++ + F+ + G P++ +Y L+ G+ + + + ++ +M S
Sbjct: 370 RSEMDEAVKVFDTMVHK--------GCVPNVRSYNILINGYCQIQRMDKAMGLLEQM-SL 420
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
LI D T+ ++ L + G ++ +A+ +F E+V
Sbjct: 421 QGLIADTVTYNTLIHGLCHVGRLQ----HAIALFHEMV 454
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ ++ R+D A +I + + + L PD ++YN LI K L
Sbjct: 229 NGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL------- 281
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD TY TL+ G DL++ E M N+ LD +TA
Sbjct: 282 KQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQ-ENIRLDDVAYTA 340
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E V R + GL P Y +++E + D
Sbjct: 341 LISGLCQEGRY---------LDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGD 385
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ +DE +++ ++ G++PD +Y++LI+ K K+D
Sbjct: 154 WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDD 213
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
+++ D G C SG PD+ TY TL+
Sbjct: 214 ANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 273
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
G DL+ +++ EM S L D+ T+T ++D G ++
Sbjct: 274 GLCKKGDLKQAHDLIDEM-SMKGLKPDKITYTTLIDGCCKEGDLET 318
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + ++ K GL P +S+N L++ I+ LD + + G PD++
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH-------ASGVQPDVY 196
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D SG + +
Sbjct: 197 TYSVLINGLCKESKMDDANELFDEMLD-KGLVPNGVTFTTLIDGHCKSGRVDLA------ 249
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 250 --MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 280
>gi|302768505|ref|XP_002967672.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
gi|300164410|gb|EFJ31019.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
Length = 717
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NT+ N +I+ +++D+ QIL ++ + ++PD+ ++N L++A + +L +
Sbjct: 263 KANTLTFNVMIKLYARVEKLDKLEQILHTMADADVDPDATTFNSLVAAFVGLGELSLAES 322
Query: 73 FNEQLKDNGQ------------KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ L+ G+ + S F PD+ TY TL+ G+ + ++++ M+
Sbjct: 323 IVQSLRGEGEHQKRVPALLPKLREHSAKFQPDVRTYTTLMKGYVQHNRVSDAMQLLVAMQ 382
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIK 146
T AM + + ++ +I+
Sbjct: 383 -------QEKTSAAMPNEVTFTTAIR 401
>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
Length = 410
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ +A Q+ E++ + G+ P +++N+LI K K+ + F
Sbjct: 142 NVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFF 201
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K + G P + TY L+ GF A+D+ + +MK L + T+T
Sbjct: 202 NQMK-------AAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKE-RRLAPTKVTYTI 253
Query: 135 MVDAL 139
++ A
Sbjct: 254 LIGAF 258
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDN 80
+I A + +D A+++L +EK GLE D SY +L+ A C++ K + F
Sbjct: 254 LIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLF------- 306
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
Q S G P+ Y ++ G+ L ++ EM+
Sbjct: 307 -QSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMR 345
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 40/216 (18%)
Query: 14 KLNTIVMNAVIEA----SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDV 69
K N + NAVI+A E +R+ E + E + G++PD +++N L++ C K +
Sbjct: 144 KPNLVTYNAVIDACGKGGVEFKRVLEIFD--EMLRNGMQPDRITFNSLLAVCSKGGLWEA 201
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ ++ + G DIFTY TLL L EI+ EM + N++ +
Sbjct: 202 ARSLSCEMVNR-------GIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPA-KNILPNV 253
Query: 130 STFTAMVDALLYSGSI----------KVVGL--------YALCIFGEI--------VKRV 163
T++ M+D +G + K +G+ L I+ ++ V R
Sbjct: 254 VTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCRE 313
Query: 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
N G+ Y +++ + YD+V+ + M
Sbjct: 314 MENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEM 349
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I+ +A R+D+A + ++ G+ D +SYN L+S K + + M
Sbjct: 252 NVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVC 311
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRST 131
+++++G D+ TY LL G+ + ++ EMK+ NL+ T
Sbjct: 312 REMENSG-------IRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLL----T 360
Query: 132 FTAMVDALLYSGSIKVVGLY--ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ ++D +YS GLY A+ +F E K GL LY +++ L
Sbjct: 361 YSTLID--VYSKG----GLYREAMDVFREFKK-----AGLKADVVLYSALIDAL 403
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 33 IDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
ID A +L+ +EKG +E D + YN +I K K +D + ++ + G P
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG-------IRP 291
Query: 92 DIFTYATL---LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
D+FTY++L L + D LL + E K N++ TF+A++DA + G +
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV----TFSALIDAFVKEGKL--- 344
Query: 149 GLYALCIFGEIVKR 162
+ A ++ E++KR
Sbjct: 345 -VEAEKLYDEMIKR 357
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ EA ++ E +++ ++PD +Y+ LI+ +LD
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD------ 380
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P++ TY+TL+ GF AK ++ +E+ EM S L+ + T+T
Sbjct: 381 -EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYTT 438
Query: 135 MVDALL 140
++
Sbjct: 439 LIHGFF 444
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E + R + + N +IE +A ++++ +++ ++ KG+ P+ ++YN +IS +
Sbjct: 492 EYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ +++K++G +SG TY TL+ D ++ E++ EM+S C
Sbjct: 552 GSKEEADSLLKKMKEDGPLPNSG-------TYNTLIRARLRDGDREASAELIKEMRS-CG 603
Query: 125 LILDRSTFTAMVDALLYSGSI 145
D ST +V +L+ G +
Sbjct: 604 FAGDASTI-GLVTNMLHDGRL 623
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ +I +A+ D A + + V G+ P+ L+YNIL+ K KL M
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 491
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
E L+ + + PDI+TY ++ G A ++ E+ CNL L
Sbjct: 492 EYLQRSTME-------PDIYTYNIMIEGMCKAGKVEDGWELF------CNLSL 531
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 39/197 (19%)
Query: 32 RIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
++D+A + + K P + +N L+SA K K ++ + EQ++ G
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K G+ PDI T ++LL G+ H+K + + +V +M
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE- 181
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
D TFT ++ L A+ + ++V+R C P Y ++++
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKAS----EAVALVDQMVQRGCQ-----PDLVTYGTVVNG 232
Query: 183 LAARVDYDIVKSPYRRM 199
L R D D+ S ++M
Sbjct: 233 LCKRGDIDLALSLLKKM 249
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+DEA + E + K P+ ++Y+ LI K K+++ M ++ S G
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM-------SQRGLV 430
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
+ TY TL+ GF A+D + ++VF+ + + T+ ++D L +G +
Sbjct: 431 GNTVTYTTLIHGFFQARDCDN-AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLA---- 485
Query: 151 YALCIFGEIVKRVCSNPGLW 170
A+ +F E ++R P ++
Sbjct: 486 KAMVVF-EYLQRSTMEPDIY 504
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +++++ ++RI +A +++ VE G +PD+ ++ LI K +
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
+Q+ G C PD+ TY T++ G D+ L ++ +M+ + D
Sbjct: 209 ALVDQMVQRG--C-----QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVI 260
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++D L + AL +F E+ N G+ P Y S++ L
Sbjct: 261 YNTIIDGLCKYKHMD----DALNLFTEM-----DNKGIRPDVFTYSSLISCLCN------ 305
Query: 192 VKSPYRRMWPDSTGTISPEVQEE 214
Y R W D++ +S ++ +
Sbjct: 306 ----YGR-WSDASRLLSDMIERK 323
>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 558
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
K +T +N +I+A + ++ A++++ + + S S+N+L+ + + D
Sbjct: 228 KKDTAALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKA 287
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E +K++G F PD+F+Y + + H +D + + +++ EM+
Sbjct: 288 MEDMKEHG-------FEPDVFSYTNFIEAYGHERDFRKVDQVLEEMR 327
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L++ N ++ A+ D A + +E + E G EPD SY I A +
Sbjct: 263 LSSRSFNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQV 322
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++++NG C P+ TY ++++ A L+ LE+ +MKS + D ++
Sbjct: 323 LEEMRENG--CP-----PNAVTYTSVMLHLGKAGQLRKALEVYEKMKS-DGCVADTPFYS 374
Query: 134 AMVDALLYSGSIK 146
+M+ L +G +K
Sbjct: 375 SMIFILGKAGRLK 387
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I +R+ EA ++++ ++K + P+ ++YN LI LD
Sbjct: 301 NVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLL 360
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--------KSCCNLI 126
+QLK N G P + TY L+ G+ A + + + ++ EM K C ++
Sbjct: 361 DQLKSN-------GLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVL 413
Query: 127 LDRST-FTAMVDALLYSGSIKVVGLYA-LCIFGEIVKRVCSNPGLWPKPHLYVSM--MHE 182
+D M A S++ GL + ++G ++ +C + L+ SM MH
Sbjct: 414 IDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHV 473
Query: 183 LAARVDYDIVKSPY 196
+ V Y+ + Y
Sbjct: 474 EPSDVIYNTMIHGY 487
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 32/161 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+A + ++I EA+++L + KGL P+ +SYN++I+ + ++ T
Sbjct: 237 NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEIL 296
Query: 75 EQLKD--------------NGQKCSSGGFH---------------PDIFTYATLLMGFRH 105
E++ NG C+ G FH P++ TY TL+
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGY-CNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
A +L +E + +M+ L + T+T ++D G +K
Sbjct: 356 AGNLNRAMEFLDQMRD-RGLHPNGRTYTTLIDGFSQQGFLK 395
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 22/172 (12%)
Query: 22 AVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKD 79
+I+ + + +AYQI+ E VE G P ++YN LI+ CI + D + E ++
Sbjct: 383 TLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIER 442
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF PD+ +Y+T++ GF ++L+ ++ EM + + D +T+++++ L
Sbjct: 443 --------GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA-KGISPDVATYSSLIQGL 493
Query: 140 LYSGSIKVVGLYALC-IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
K L +C +F E++ + GL P Y S+++ D D
Sbjct: 494 -----CKQRRLGEVCDLFQEML-----SLGLPPDEVTYTSLINAYCIEGDLD 535
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E V+ GL P+ ++Y LI++ K L+ M F +Q++D G HP+ TY TL+
Sbjct: 333 EMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR-------GLHPNGRTYTTLI 385
Query: 101 MGFRHAKDLQSLLEIVFEM 119
GF L+ +I+ EM
Sbjct: 386 DGFSQQGFLKQAYQIMKEM 404
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K ++ V + V+++ I++A I+ + G P LSYN ++ A I+TK+ V +
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQ-SVKIA 187
Query: 73 ---FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILD 128
F E ++ G P+++TY L+ GF A +L+ L EM ++ C + +
Sbjct: 188 EGIFKEMVES--------GVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGC--LPN 237
Query: 129 RSTFTAMVDA 138
T+ ++DA
Sbjct: 238 VVTYNTIIDA 247
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
+ + + +I Q +++A+Q+ +E V KG+ PD +Y+ LI K ++L +V F
Sbjct: 447 DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLF 506
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E L S G PD TY +L+ + DL L + EM
Sbjct: 507 QEML--------SLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+++I+ + +R+ E + E + GL PD ++Y LI+A LD + ++++
Sbjct: 487 SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI- 545
Query: 80 NGQKCSSGGFHPDIFTYATLLMGF------RHAKDLQSLLEIVFE 118
QK GF PDI TY L+ GF + AK L LL++++E
Sbjct: 546 --QK----GFSPDIVTYNVLINGFNKQSRTKEAKRL--LLKLLYE 582
>gi|14488297|gb|AAK63878.1|AC074105_7 Putative salt-inducible protein [Oryza sativa]
gi|222612440|gb|EEE50572.1| hypothetical protein OsJ_30721 [Oryza sativa Japonica Group]
Length = 854
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ +A + +DEAY +E + +GL P++ +YN LISA + + +E
Sbjct: 542 VAFSAYVNGLCRLDFLDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRAGNV------SEA 595
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
LK QK G PDIFT L+ GF L + + F M S L D T+ M+
Sbjct: 596 LKLE-QKMRQSGLVPDIFTRNILIDGFCREGGLNTANNLFFGMYS-IGLTPDVVTYNTML 653
Query: 137 DALLYSGSIK 146
+A S I
Sbjct: 654 NAYCRSKDIN 663
>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
Length = 688
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N V+ A R+A R D+ + E ++ G+EP ++YN L+ + +K + D ++++
Sbjct: 173 NHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMET 232
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT--AMVD 137
G C P+ TY ++ G DL+ E+V M+ L S+FT ++
Sbjct: 233 RGSGCL-----PNDVTYNVVITGLTRKGDLEEAAELVEGMR----LSKKASSFTYNPLIT 283
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
LL G +K V Y L + E N G+ P Y +M+H L
Sbjct: 284 GLLARGCVKKV--YDLQLEME-------NEGIMPTVVTYNAMIHGL 320
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I A R A + E +E+GL + +Y +LI K + M F
Sbjct: 589 NEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFY 648
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFR-HAKDLQSLLEIV 116
++ N G HPD T+ L+ GF H L+IV
Sbjct: 649 FEMHQN-------GIHPDYLTHKALVKGFDGHVHHTIEYLDIV 684
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 29/145 (20%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
+G+ D+++YNILI KT L + K+ K S G PD TY L+
Sbjct: 479 EGISSDTVTYNILIHGLCKTGNL-------KDAKELQMKMVSNGLQPDCITYTCLI---- 527
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV-DALLYSGSIKVVGLYALCIFGEIVK-- 161
HA + LL R F M+ D LL S V ++A C G +
Sbjct: 528 HAHCERGLLREA------------RKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAY 575
Query: 162 ---RVCSNPGLWPKPHLYVSMMHEL 183
R G+ P Y ++H L
Sbjct: 576 GWFRKMLEEGVEPNEITYNVLIHAL 600
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E+++ + + + + N ++ ++++A ++ ES+ ++G++ + SYNILI+ K
Sbjct: 275 ELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKD 334
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+K+D E+++ G K P TY TL+ + +++ ++ EM++C
Sbjct: 335 QKIDEAFRLFEEMRPKGLK-------PSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 387
Query: 125 LILDRSTFTAMVDALLYSGSIK 146
L ST+ ++D L +G ++
Sbjct: 388 F-LKLSTYCVLLDGLCKNGHLE 408
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD 68
+ ++ + + + +++ I +A Q+ E EKGL D+ +Y ILI+ K +K
Sbjct: 70 KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+ + +E++K N C D+FTY ++ L++ EM ++ D
Sbjct: 130 LAIKLHEKMKGN---CKG-----DVFTYGMIIDSLCKDGMTTEALDMFSEMIG-AGILPD 180
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+++++D L G +K AL F E+ R G+ + Y S++H L+
Sbjct: 181 VVVYSSLMDGLCRFGRLK----EALEFFKEMEGR-----GISADVYTYNSLIHGLS 227
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ + K N V + +++ A +++EA++ + + K GLEPD+++YNILI+
Sbjct: 417 IKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGM 476
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
L + Q+++ G C PD T+ ++ ++ ++++ EM++
Sbjct: 477 LSEAVKLLWQMEEKG--C-----LPDSITFNVIIQNLLKENEIHEAIQLLEEMRN 524
>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
Length = 316
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N I A + R+DEA +++ G PD ++Y +I K +LD M Q+
Sbjct: 82 VFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQM 141
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR------ST 131
D+G P+I T+ TL+ GF + E+ +EM +DR +T
Sbjct: 142 IDDG-------LSPNIITFTTLIHGFSMYGKWEKAEELFYEM-------MDRGIPPNVNT 187
Query: 132 FTAMVDALLYSGSI 145
F +M+D L G +
Sbjct: 188 FNSMIDRLFKEGKV 201
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 34/227 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T MN +++ + + + A + + + + PD S+N L+ K + L + E
Sbjct: 1514 DTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTME 1573
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFT 133
++K + GF P + TY +L+ + KD Q++ ++ EM+ C ++ T+T
Sbjct: 1574 EMKQH-------GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVV---TYT 1623
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD--Y 189
++ AL +G + AL F ++ G+ P Y S+++ L A R++ Y
Sbjct: 1624 ILMHALGKAGRTR----EALDTFDKL-----KEDGVAPDASFYNSLIYILGRAGRLEDAY 1674
Query: 190 DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
+V+ T I+P V + L+ AA + Q + AL L
Sbjct: 1675 SVVEEM-------RTTGIAPNVT--TFNTLISAACDHSQAENALKLL 1712
>gi|18422700|ref|NP_568665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635755|sp|Q56XR6.2|PP421_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46680
gi|332008030|gb|AED95413.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 468
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ I N +I+ IDEAY + + E G+EPD +YN LIS K L+ V F
Sbjct: 47 DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLF 106
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L G PD+++Y TL+ + +I+ E L+ T+
Sbjct: 107 DEMLHS--------GLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYN 158
Query: 134 AMVDALLYSG 143
++DAL SG
Sbjct: 159 ILLDALCKSG 168
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A ++ D A ++ + ++ ++P+ ++YNILI+ K++++ +LK +
Sbjct: 158 NILLDALCKSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKS 217
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G+ P+ TY T+L + K ++ L++ +MK D A+V AL+
Sbjct: 218 -------GYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKK-EGYTFDGFANCAVVSALI 269
Query: 141 YSG 143
+G
Sbjct: 270 KTG 272
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 27/155 (17%)
Query: 33 IDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
++EA +IL+ ++ G PD ++YN +I A C+ + ++ E LK CS
Sbjct: 186 VEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAA----EILKT--MSCS----- 234
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC--NLILDRSTFTAMVDALLYSGSIKVV 148
PD+ T+ TLL GF A L LE++ EM C N++ D T+T +V+ L G ++V
Sbjct: 235 PDLVTFNTLLDGFCKAGMLPRALEVLEEM---CRENILPDVITYTILVNGLCRVGQVQV- 290
Query: 149 GLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
A + EIV++ G P Y S++ L
Sbjct: 291 ---AFYLLEEIVRQ-----GYIPDVIAYTSLVDGL 317
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 31/170 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I + +A + A + L ++++ + PD +N LI K D +
Sbjct: 61 NLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLF 120
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-----KSCCNLILDR 129
E ++ S +PDIFTY T++ G + +L+ E++ EM KS +++
Sbjct: 121 ENME-------SSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYN 173
Query: 130 STFTAMV-------DALLYSGSIKVVG-----------LYALCIFGEIVK 161
+ A + +AL +K+ G ++ALC+ G +V+
Sbjct: 174 TLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVE 223
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 70/131 (53%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + ++E + E + G PD ++YN LI+ K +K+ +
Sbjct: 264 DVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYF 323
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K+NG K P++ TY+TL+ F +Q ++++ +M+ L+ + T+T+
Sbjct: 324 SEMKNNGLK-------PNVVTYSTLIDAFCKEGMMQGAIKLLXDMRR-TGLLPNEFTYTS 375
Query: 135 MVDALLYSGSI 145
++DA +G++
Sbjct: 376 LIDANCKAGNL 386
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
KLN + A+++ +A R+ EA ++ S+ K G+ P+ Y L+ IK ++++ M
Sbjct: 402 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 461
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+Q+ + K PD+ Y +++ G + L+ I+ EMKS
Sbjct: 462 ILKQMTECNIK-------PDLILYGSIIWGHCSQRKLEETKLILEEMKS 503
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I+A +A + +A + ++ G+E ++Y +LI + +++ +
Sbjct: 509 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAV--- 565
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
D + S G P++ Y +L+ G ++S ++ EM+ C + D + FTA
Sbjct: 566 ----DYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQ-CRGMTPDITAFTA 620
Query: 135 MVDALLYSGSIK 146
++D L G+++
Sbjct: 621 LIDGNLKHGNLQ 632
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ N + +I + + +D A ++LE +EK G EPD+++YNI+I++ + ++D
Sbjct: 320 RKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVD 379
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
D + +S PD + +L GF A+ E++ +M + C LI
Sbjct: 380 ----------DALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLI- 428
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187
TF ++D L +G + YA +F ++ + C+ P Y S+++ + +
Sbjct: 429 -EMTFNILIDTLCQNGLVN----YATQVFEQMPRYRCT-----PDIVTYSSLLNGFSEQG 478
Query: 188 DYDIVKSPYRRM--WPDS-------TGTISPEVQEEAGHLLMEAALND 226
++ +R M PD G E+AG L+ E D
Sbjct: 479 LVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKD 526
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 21/127 (16%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAV++ A R ++A +++ E V K P+ +++NILI++ + +D + EQ+ +
Sbjct: 500 NAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPN 559
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PDIFTY L+ GF L L+++ ST + DA+
Sbjct: 560 YGST-------PDIFTYNALINGFSEQGRLDDALKLL-------------STMSCKPDAI 599
Query: 140 LYSGSIK 146
Y+ ++K
Sbjct: 600 SYNSTLK 606
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + + +D A ++LE + G PD +YN LI+ F+
Sbjct: 530 NEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALING------------FS 577
Query: 75 EQ--LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
EQ L D + S+ PD +Y + L G A+ Q E+V EM
Sbjct: 578 EQGRLDDALKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEM 624
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 32/161 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+A + ++I EA+++L + KGL P+ +SYN++I+ + ++ T
Sbjct: 237 NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEIL 296
Query: 75 EQLKD--------------NGQKCSSGGFH---------------PDIFTYATLLMGFRH 105
E++ NG C+ G FH P++ TY TL+
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGY-CNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
A +L +E + +M+ L + T+T ++D G +K
Sbjct: 356 AGNLNRAMEFLDQMRD-RGLHPNGRTYTTLIDGFSQQGFLK 395
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 22/172 (12%)
Query: 22 AVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKD 79
+I+ + + +AYQI+ E VE G P ++YN LI+ CI + D + E ++
Sbjct: 383 TLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIER 442
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF PD+ +Y+T++ GF ++L+ ++ EM + + D +T+++++ L
Sbjct: 443 --------GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA-KGISPDVATYSSLIQGL 493
Query: 140 LYSGSIKVVGLYALC-IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
K L +C +F E++ + GL P Y S+++ D D
Sbjct: 494 -----CKQRRLGEVCDLFQEML-----SLGLPPDEVTYTSLINAYCIEGDLD 535
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E V+ GL P+ ++Y LI++ K L+ M F +Q++D G HP+ TY TL+
Sbjct: 333 EMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR-------GLHPNGRTYTTLI 385
Query: 101 MGFRHAKDLQSLLEIVFEM 119
GF L+ +I+ EM
Sbjct: 386 DGFSQQGFLKQAYQIMKEM 404
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K ++ V + V+++ I++A I+ + G P LSYN ++ A I+TK+ V +
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQ-SVKIA 187
Query: 73 ---FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILD 128
F E ++ G P+++TY L+ GF A +L+ L EM ++ C + +
Sbjct: 188 EGIFKEMVES--------GVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGC--LPN 237
Query: 129 RSTFTAMVDA 138
T+ ++DA
Sbjct: 238 VVTYNTIIDA 247
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
+ + + +I Q +++A+Q+ +E V KG+ PD +Y+ LI K ++L +V F
Sbjct: 447 DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLF 506
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E L S G PD TY +L+ + DL L + EM
Sbjct: 507 QEML--------SLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+++I+ + +R+ E + E + GL PD ++Y LI+A LD + ++++
Sbjct: 487 SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI- 545
Query: 80 NGQKCSSGGFHPDIFTYATLLMGF------RHAKDLQSLLEIVFE 118
QK GF PDI TY L+ GF + AK L LL++++E
Sbjct: 546 --QK----GFSPDIVTYNVLINGFNKQSRTKEAKRL--LLKLLYE 582
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T V NA+I AS A +D AY + + G PD +YN L+ + +D +
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLV 246
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
Q++ G P++FTY L+ GF +A ++ ++ +MK
Sbjct: 247 RQMEGEG-------IRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMK 285
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V KGL +SYN++I +K +D ++++D GF P++ T+ TL+ G
Sbjct: 425 VLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK-------GFLPNLVTFNTLISG 477
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+ ++ + ++V +M + D TFT+++D L + + A F E+ +
Sbjct: 478 YSKLGNVHN-AKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLD----DAFVCFEEMAEW 532
Query: 163 VCSNPGLWPKPHLYVSMMHELAA 185
G+ P Y +MH L +
Sbjct: 533 -----GVRPNAQTYNVLMHTLCS 550
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N VI+ +A +D+A +I++ ++ KG P+ +++N LIS K + + L +
Sbjct: 437 NMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLME 496
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ GF PDI T+ +L+ G + L + FE + + + T+ ++ L
Sbjct: 497 H-------GFMPDIITFTSLIDGLCNTHQLDDAF-VCFEEMAEWGVRPNAQTYNVLMHTL 548
Query: 140 LYSGSI 145
+G +
Sbjct: 549 CSAGHV 554
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 18/196 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E++ R+ K N+ + ++I ++ EA + E + +G+ PD++ Y LI K
Sbjct: 748 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 807
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ F ++ S PD+ TY ++ GF D+ ++ EM C
Sbjct: 808 GDIRAASKFFYEMH-------SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM-FCKG 859
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L D TFT +++ +G +K A + +++ CS P Y +++ L
Sbjct: 860 LEPDSVTFTELINGYCKAGHMKD----AFRVHNHMIQAGCS-----PNVVTYTTLIDGLC 910
Query: 185 ARVDYDIVKSPYRRMW 200
D D MW
Sbjct: 911 KEGDLDSANELLHEMW 926
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 30/163 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N VI + RI EA+ +L +E KG PD +SY+ +++ + +LD
Sbjct: 688 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 747
Query: 75 EQLKDNGQKCSS----------------------------GGFHPDIFTYATLLMGFRHA 106
E +K G K +S G PD Y TL+ GF
Sbjct: 748 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 807
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
D+++ + +EM S ++ D T+TA++ G + G
Sbjct: 808 GDIRAASKFFYEMHS-RDITPDVLTYTAIISGFCQIGDMVEAG 849
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+++ +I +A + +A+++ ++ G P+ ++Y LI K LD N
Sbjct: 863 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA---N 919
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L + + G P+IFTY +++ G + +++ +++V E ++ L D T+T
Sbjct: 920 ELLHEMWKI----GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEA-AGLNADTVTYTT 974
Query: 135 MVDALLYSGSI 145
++DA SG +
Sbjct: 975 LMDAYCKSGEM 985
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+I + + EA ++ E KGLEPDS+++ LI+ K + +
Sbjct: 828 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 887
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G CS P++ TY TL+ G DL S E++ EM L + T+ +
Sbjct: 888 NHMIQAG--CS-----PNVVTYTTLIDGLCKEGDLDSANELLHEMWK-IGLQPNIFTYNS 939
Query: 135 MVDALLYSGSI----KVVGLY 151
+V+ L SG+I K+VG +
Sbjct: 940 IVNGLCKSGNIEEAVKLVGEF 960
>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1604
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N V+ R+A R D+ + E +E G+EP ++YN L+ + +K + D ++++
Sbjct: 1088 NRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMET 1147
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT--AMVD 137
G C P+ TY ++ G DL+ E+V M+ L S+FT ++
Sbjct: 1148 RGSGC-----LPNDVTYNVVITGLTRKGDLEEAAELVEGMR----LSKKASSFTYNPLIT 1198
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
LL G +K V Y L + E N G+ P Y +M+H L
Sbjct: 1199 GLLARGCVKKV--YDLQLEME-------NEGIMPTVVTYNAMIHGL 1235
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 22/151 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS-----ACIKTKKLDVT 70
N + N VI ++EA +++E + + S +YN LI+ C+K K D+
Sbjct: 1155 NDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVK-KVYDLQ 1213
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+ + G P + TY ++ G + +++ EM++ L+ D
Sbjct: 1214 LEMENE-----------GIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRA-MGLLPDVI 1261
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
T+ ++++ +G++K AL +FG++ +
Sbjct: 1262 TYNSLLNGYCKAGNLK----EALLLFGDLRR 1288
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNE 75
T N I A E RID+A ++L S+ PD +SYN L+ IK +K + ++ F++
Sbjct: 379 TSTYNIYIRALCEFGRIDDARELLSSMAA---PDVVSYNTLMHGYIKMRKFVEASLLFDD 435
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTA 134
+G +P I TY TL+ G + +L+ + EM S LI D T+T
Sbjct: 436 --------LKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTS--QLIYPDVITYTT 485
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
++ + +G++ + A I+ E++++ G+ P + Y +
Sbjct: 486 LLKGFVKNGNLSM----ATEIYDEMLRK-----GIKPDGYAYTT 520
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA++ +A IDEAY+ L + E+G+ P+ SY ILIS K + +
Sbjct: 655 NVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLY 714
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRH-AKDLQSL 112
+++ D PD +T+ L F+H KD +S+
Sbjct: 715 KEMLDK-------EIEPDGYTHRAL---FKHLEKDHESM 743
>gi|21618238|gb|AAM67288.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ I N +I+ IDEAY + + E G+EPD +YN LIS K L+ V F
Sbjct: 42 DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLF 101
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L G PD+++Y TL+ + +I+ E L+ T+
Sbjct: 102 DEMLHS--------GLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYN 153
Query: 134 AMVDALLYSG 143
++DAL SG
Sbjct: 154 ILLDALCKSG 163
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A ++ D A ++ + ++ ++P+ ++YNILI+ K++++ +LK +
Sbjct: 153 NILLDALCKSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKS 212
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G+ P+ TY T+L + K ++ L++ +MK D A+V AL+
Sbjct: 213 -------GYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKK-EGYTFDGFANCAVVSALI 264
Query: 141 YSG 143
+G
Sbjct: 265 KTG 267
>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 574
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 43/193 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV----- 69
N N +++A + ++++EA+++++ +E+ G+ PD+++YN I+ C K V
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNT-IATCYVQKGETVRAESE 245
Query: 70 ---TMPFNEQLKDNGQKCS--SGGF---------------------HPDIFTYATLLMGF 103
M E+ K NG+ C GG+ ++ + +L+ GF
Sbjct: 246 VVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGF 305
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
D + E++ MK CN+ D T++ +++A +G ++ A +F E+VK
Sbjct: 306 VEVMDRDGIDEVLTLMKE-CNVKADVITYSTVMNAWSSAGYME----KAAQVFKEMVK-- 358
Query: 164 CSNPGLWPKPHLY 176
G+ P H Y
Sbjct: 359 ---AGVKPDAHAY 368
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKK 66
V + KL++I NAVI A E+ +++A Q +L+ E GL P + +YN LI K
Sbjct: 106 VEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 165
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + + + + G + P+I T+ L+ + K ++ E+V +M+ C
Sbjct: 166 PERSSELLDLMLEEG----NVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEEC 217
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+++ A+ + E V+ GL P+ ++Y LI K +KLD E +K +G +
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR------- 562
Query: 91 PDIFTYATLLMGFRHAKDL---QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
P++ TY L+ G + + L +++ E N++ T+TAM+D L +GS +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV----TYTAMIDGLCKNGSTSL 618
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207
AL +F +++++ C P Y S++ L + ++ + + + G I
Sbjct: 619 ----ALEMFNKMIEQGC-----LPNLLTYSSLIRALGQEGKVEEAENLFAEL--ERHGLI 667
Query: 208 SPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240
E+ ++EA + G+V+ A + L I
Sbjct: 668 PDEITYVK---MIEAYIMSGKVEHAFNFLGRMI 697
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 7 IVNREHWKL------NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+++R H L N ++ NAVI A + + +A I++ V E + PD+ +Y +I
Sbjct: 199 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMIL 258
Query: 60 ACIKTKKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ LD + FN+ K+ G P+ TY+TL+ G + + +++ E
Sbjct: 259 GHCRKHDLDSALQVFNQMAKE--------GCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310
Query: 119 M 119
M
Sbjct: 311 M 311
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
NT+ NA+I E +RI A+ +L + + G P+ ++YN +I CI +
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448
Query: 74 NEQLK------------------DNGQKCSS---------GGFHPDIFTYATLLMGFRHA 106
N L+ D+G S+ GG PD ++Y L+ GF
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
++S + EM L + T+TA++D
Sbjct: 509 SKMESAFGLFNEMVD-DGLCPNEVTYTALIDG 539
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+ +G++P+ L YN +I+A K D + E + +K PD FTY ++++G
Sbjct: 207 LSEGVQPNLLIYNAVINALCK----DGNVADAETIM---KKVFESEMSPDTFTYTSMILG 259
Query: 103 FRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSI 145
DL S L++ +M K C + T++ +++ L SG +
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCE--PNTVTYSTLINGLCDSGRV 301
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K N I NA++ + + + +A ++ + + K G+ P+ +YNILI A K + ++
Sbjct: 303 KPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFA 362
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ G PD+ TY L+ G DL++ +V EM + +L D T+
Sbjct: 363 LYRIM-------LGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDT-KHLKADLITY 414
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
++D+L G +K AL + E+ ++ GL P Y +M+
Sbjct: 415 NILIDSLCNKGEMK----KALRLLDEMCRK-----GLKPSQLTYNTMI 453
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
+H K + I N +I++ + +A ++L E KGL+P L+YN +I K L
Sbjct: 405 KHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRA 464
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ Q++ G+ ++ TY L+ GF L+ ++ EM LI +R
Sbjct: 465 ALNLRSQMEKVGR-------LANVATYNVLIKGFCKKDKLEDANGLLNEMLE-KGLIPNR 516
Query: 130 STFTAMVDALLYSGSI 145
T+ + + ++ G +
Sbjct: 517 MTYEIVTEEMMEKGFV 532
>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
Length = 574
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 43/193 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV----- 69
N N +++A + ++++EA+++++ +E+ G+ PD+++YN I+ C K V
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNT-IATCYVQKGETVRAESE 245
Query: 70 ---TMPFNEQLKDNGQKCS--SGGF---------------------HPDIFTYATLLMGF 103
M E+ K NG+ C GG+ ++ + +L+ GF
Sbjct: 246 VVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGF 305
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
D + E++ MK CN+ D T++ +++A +G ++ A +F E+VK
Sbjct: 306 VEVMDRDGIDEVLTLMKE-CNVKADVITYSTVMNAWSSAGYME----KAAQVFKEMVK-- 358
Query: 164 CSNPGLWPKPHLY 176
G+ P H Y
Sbjct: 359 ---AGVKPDAHAY 368
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKK 66
V + KL++I NAVI A E+ +++A Q +L+ E GL P + +YN LI K
Sbjct: 106 VEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 165
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + + + + G P+I T+ L+ + K ++ E+V +M+ C
Sbjct: 166 PERSSELLDLMLEEGNV----DVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEEC 217
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N ++ + ++ EA Q L + +G PD +YN +I K D+
Sbjct: 183 DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKR---DMLQEAT 239
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E LKD K GF PD TY +L+ G D++ LE+ E ++ +L D + +
Sbjct: 240 ELLKDAIFK----GFVPDRVTYCSLINGLCAEGDVERALELFNEAQA-KDLKPDLVVYNS 294
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170
+V L G I L+AL + E+V+ C +P +W
Sbjct: 295 LVKGLCRQGLI----LHALQVMNEMVEDGC-HPDIW 325
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL 67
V + +N N I E R++EA ++ES++ + PD ++YN L+ K K+
Sbjct: 141 VLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKV 200
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI----VFEMKSCC 123
+ ++ + G C PD FTY T++ G+ LQ E+ +F+
Sbjct: 201 QEAAQYLRRMMNQG--CI-----PDDFTYNTIIDGYCKRDMLQEATELLKDAIFK----- 248
Query: 124 NLILDRSTFTAMVDALLYSGSIK 146
+ DR T+ ++++ L G ++
Sbjct: 249 GFVPDRVTYCSLINGLCAEGDVE 271
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTM 71
K + +V N++++ I A Q++ E VE G PD +YNI+I+ K + D +
Sbjct: 286 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAV 345
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
N+ + G+ PD+FT+ T++ G+ L S L++V M + D T
Sbjct: 346 VMNDAIVK--------GYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWM-YGIAPDAIT 396
Query: 132 FTAMVDALLYSGSIKVV 148
+ ++++ L +G K V
Sbjct: 397 YNSVLNGLCKAGKAKEV 413
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
V+N + +A + A+ ++E ++ E + KG P++++YNILI K +L E+
Sbjct: 400 VLNGLCKAGK-AKEVNETFE--EMILKGCRPNAITYNILIENFCKINQL-------EEAS 449
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ S G PD ++ TL+ GF DL ++F+ LD ++A D
Sbjct: 450 GVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAY-LLFQK-------LDEKGYSATADT 501
Query: 139 ---LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
L+ + S K+ A IFGE++ + KP LY
Sbjct: 502 FNILIGAYSSKLNMQMAEKIFGEMISK-------GYKPDLY 535
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+++ A+ + E V+ GL P+ ++Y LI K +KLD E +K +G +
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR------- 562
Query: 91 PDIFTYATLLMGFRHAKDL---QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
P++ TY L+ G + + L +++ E N++ T+TAM+D L +GS +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV----TYTAMIDGLCKNGSTSL 618
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207
AL +F +++++ C P Y S++ L + ++ + + + G I
Sbjct: 619 ----ALEMFNKMIEQGC-----LPNLLTYSSLIRALGQEGKVEEAENLFAEL--ERHGLI 667
Query: 208 SPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240
E+ ++EA + G+V+ A + L I
Sbjct: 668 PDEITYVK---MIEAYIMSGKVEHAFNFLGRMI 697
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 7 IVNREHWKL------NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+++R H L N ++ NAVI A + + +A I++ V E + PD+ +Y +I
Sbjct: 199 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMIL 258
Query: 60 ACIKTKKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ LD + FN+ K+ G P+ TY+TL+ G + + +++ E
Sbjct: 259 GHCRKHDLDSALQVFNQMAKE--------GCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310
Query: 119 M 119
M
Sbjct: 311 M 311
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
NT+ NA+I E +RI A+ +L + + G P+ ++YN +I CI +
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448
Query: 74 NEQLK------------------DNGQKCSS---------GGFHPDIFTYATLLMGFRHA 106
N L+ D+G S+ GG PD ++Y L+ GF
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
++S + EM L + T+TA++D
Sbjct: 509 SKMESAFGLFNEMVD-DGLCPNEVTYTALIDG 539
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+ +G++P+ L YN +I+A K D + E + +K PD FTY ++++G
Sbjct: 207 LSEGVQPNLLIYNAVINALCK----DGNVADAETIM---KKVFESEMSPDTFTYTSMILG 259
Query: 103 FRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSI 145
DL S L++ +M K C + T++ +++ L SG +
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCE--PNTVTYSTLINGLCDSGRV 301
>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
Length = 590
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E++ E + N+++ E +I +A ++L E E+ +EPD+++ N LI+A K
Sbjct: 324 EVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKI 383
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ M +++ + G K PD FT+ L+ GF ++ S E +FEM
Sbjct: 384 GDMGSAMKVKKKMLEAGLK-------PDQFTFKALIHGFCKLHEVDSAKEFLFEMLD-AG 435
Query: 125 LILDRSTFTAMVDALLYSGSIKVV----------GLYA-LCIFGEIVKRVC 164
ST++ +VD+ + + V GL+ + ++ +++R+C
Sbjct: 436 FSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 486
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I A ++ +++A Q+L +E + + PD +YN LIS K +
Sbjct: 196 NIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQ 255
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++++ GG PDI TY +L+ GF ++ L + E+ + T+T
Sbjct: 256 DRME-------RGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGATP---NHVTYTT 305
Query: 135 MVD----------ALLYSGSIKVVGLY-ALCIFGEIVKRVC 164
++D AL ++V GL+ + + I++++C
Sbjct: 306 LIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLC 346
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T V NA+I AS A +D AY + + G PD +YN L+ + +D +
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLV 246
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
Q++ G + P++FTY L+ GF +A ++ ++ +MK
Sbjct: 247 RQMEGEGIR-------PNVFTYTMLVDGFCNAGRVEEAFRMLDKMK 285
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V KGL +SYN++I +K +D ++++D GF P++ T+ TL+ G
Sbjct: 425 VLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK-------GFLPNLVTFNTLISG 477
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ ++ + ++V +M + D TFT+++D L
Sbjct: 478 YSKLGNVHN-AKVVLKMLMEHGFMPDIITFTSLIDGL 513
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT V N +I+ + EA ++++ + ++G++PD +Y I+AC K +
Sbjct: 708 NTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDM------- 760
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ Q+ G P+I TY TL+ G+ A + L+ EMKS L D++ +
Sbjct: 761 QRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKS-AGLKPDKAVYHC 819
Query: 135 MVDALLYSGSIKVVGLYA 152
++ +LL S+ +Y+
Sbjct: 820 LMTSLLSRASVAEEYIYS 837
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E V K GL+PD + YN +I A +D + ++++ + P
Sbjct: 518 AFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHR-------PTTR 570
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
T+ ++ GF + D++ LEI F+M I TF A++ L+ ++ A+
Sbjct: 571 TFMPIIHGFARSGDMRRALEI-FDMMRWSGCIPTVHTFNALILGLVEKCQME----KAVE 625
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
I E+ S G+ P H Y ++MH A+ D
Sbjct: 626 ILDEM-----SLAGISPNEHTYTTIMHGYASLGD 654
>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Vitis vinifera]
Length = 590
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E++ E + N+++ E +I +A ++L E E+ +EPD+++ N LI+A K
Sbjct: 324 EVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKI 383
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ M +++ + G K PD FT+ L+ GF ++ S E +FEM
Sbjct: 384 GDMGSAMKVKKKMLEAGLK-------PDQFTFKALIHGFCKLHEVDSAKEFLFEMLD-AG 435
Query: 125 LILDRSTFTAMVDALLYSGSIKVV----------GLYA-LCIFGEIVKRVC 164
ST++ +VD+ + + V GL+ + ++ +++R+C
Sbjct: 436 FSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 486
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I A ++ +++A Q+L +E + + PD +YN LIS K +
Sbjct: 196 NIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQ 255
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++++ GG PDI TY +L+ GF ++ L + E+ + T+T
Sbjct: 256 DRME-------RGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGATP---NHVTYTT 305
Query: 135 MVD----------ALLYSGSIKVVGLY-ALCIFGEIVKRVC 164
++D AL ++V GL+ + + I++++C
Sbjct: 306 LIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLC 346
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVT 70
++KL +N +I+ +A +++ A+++ E + +G EP+ ++Y I+I + ++D
Sbjct: 455 NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKA 514
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++++ NG C+ PDI TY TL+ GF + L+ +++++ M
Sbjct: 515 NVLIQKMEANG--CT-----PDIITYNTLMRGFYESNKLEEVVQLLHRM 556
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N++I A + +E+ ++L E +++GL+PD +++N+LI K K+ E
Sbjct: 251 ISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVI------EA 304
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K G SG PD+ TY +L+ GF DL S E+ M S
Sbjct: 305 KKLLGVMIESG-IVPDLVTYNSLIEGFCMVGDLNSARELFVSMPS 348
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N++IE ++ A ++ S+ KG EPD +SYN+LI+ KT K++ M +
Sbjct: 321 VTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNE 380
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMG 102
+ G++ P++ TY +LL G
Sbjct: 381 MLLVGKR-------PNVITYDSLLKG 399
>gi|3157946|gb|AAC17629.1| Similar to salt-inducible membrane protein gb|U08285 from Nicotiana
tabacum. EST gb|F14010 comes from this gene [Arabidopsis
thaliana]
Length = 364
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
IVMN +I A E ++ID+ IL+ +++ +PD ++YN ++ + ++ +
Sbjct: 175 IVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRAGLVNEILGVLST 234
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K++ CS +I TY T+L G R A L I EM C + D ++TA++
Sbjct: 235 MKED---CS---VSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQ-CGIEPDLLSYTAVI 287
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY 189
D+L SG++K +L +F E+ +R + P ++Y +++ L D+
Sbjct: 288 DSLGRSGNVK----ESLRLFDEMKQR-----QIRPSVYVYRALIDCLKKSGDF 331
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N I N V+ R+A R D I E V+ G+EPD LSY +I + ++ + ++
Sbjct: 243 VNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLSYTAVIDSLGRSGNVKESLRL 302
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+++K P ++ Y L+ + + D QS L++ E+K+ +L L
Sbjct: 303 FDEMKQR-------QIRPSVYVYRALIDCLKKSGDFQSALQLSDELKNTSSLDL 349
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T V NA+I AS A +D AY + + G +PD +YN L+ + +D +
Sbjct: 175 STAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLV 234
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
Q++ G P++FTY L+ GF +A + + + MK
Sbjct: 235 RQME-------GAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMK 273
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP-F 73
N N ++ A A +++A +L ++K G+ PD+ S+N I + + KK+D F
Sbjct: 525 NAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIF 584
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
N L+ G PD +TY +L+ + + EI+ M+S + T
Sbjct: 585 NAMLRL--------GVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSGSSATTHHTHL 636
Query: 134 AMVDALLYSGSIKVVG 149
+V AL +G G
Sbjct: 637 PIVSALTKTGQFSKAG 652
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N VI+ +A +D+A +I++ + EKG+ P+ +++N LIS K + + L +
Sbjct: 425 NMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLME 484
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ G PDI T+ +L+ G H L + EM + + T+ ++ AL
Sbjct: 485 H-------GLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAE-WGVRPNAHTYNVLMHAL 536
Query: 140 LYSGSI 145
+G +
Sbjct: 537 CSAGHV 542
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
GL P + YN LI A ++ +D +Q+ +G + PD FTY TL+ G
Sbjct: 171 GLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQ-------PDCFTYNTLVHGVCQ 223
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
+ L +V +M+ + + T+T +VD +G
Sbjct: 224 RGIIDEALRLVRQMEG-AGIRPNVFTYTMLVDGFCNAG 260
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
+ + + KL+ + +IE +A ++D+ + + S+ KG++P+ ++YN +IS
Sbjct: 419 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 478
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ L +++K++G PD TY TL+ D + E++ EM+S C
Sbjct: 479 RLLQEAYALLKKMKEDGP-------LPDSGTYNTLIRAHLRDGDKAASAELIREMRS-CR 530
Query: 125 LILDRSTFTAMVDALLYSGSI 145
+ D ST +V +L+ G +
Sbjct: 531 FVGDASTI-GLVANMLHDGRL 550
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +++I R +A Q+L + +EK + P+ +++N LI A +K K
Sbjct: 219 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA---- 274
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+L D+ K S PDIFTY +L+ GF L ++ FE + D T+
Sbjct: 275 EKLHDDMIKRS---IDPDIFTYNSLINGFCMHDRLDKAKQM-FEFMVSKDCFPDLDTYNT 330
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ S ++ G + R S+ GL Y +++ L D D +
Sbjct: 331 LIKGFCKSKRVED---------GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 381
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+++M D + P++ + +L++ N+G+++ AL+
Sbjct: 382 VFKQMVSDG---VPPDIMTYS--ILLDGLCNNGKLEKALE 416
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 30/154 (19%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLK 78
N++I R+D+A Q+ E V K PD +YN LI K+K++ D T F E
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Query: 79 -----------------------DNGQKC----SSGGFHPDIFTYATLLMGFRHAKDLQS 111
DN QK S G PDI TY+ LL G + L+
Sbjct: 354 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 413
Query: 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
LE VF+ + LD +T M++ + +G +
Sbjct: 414 ALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 446
>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
barbata]
Length = 429
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E + KGL P+ +++ LI K ++D+ M +
Sbjct: 214 SVLINGLCKESK----MDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYK 269
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ +++ EM S L D+ T+T +
Sbjct: 270 QM-------LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM-SMKGLKXDKITYTTL 321
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 322 IDGCCKEGDL 331
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 244 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL------- 296
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G D TY TL+ G DL + E M N+ LD +TA
Sbjct: 297 KQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQ-ENIRLDDVAYTA 355
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 356 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGD 400
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +SYN L++ I+ L NE + +SG PD++
Sbjct: 159 AQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDL------NEGFRLKSAMLASG-VQPDVY 211
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L + TFT ++D +G + +
Sbjct: 212 TYSVLINGLCKESKMDDANELFDEM-LVKGLXPNGVTFTTLIDGHCKNGRVDLA------ 264
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 265 --MEIYKQMLSQS-LLPDLITYNTLIYGLCKKGD 295
>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1010
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 20/169 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N +I+ + ++ A + E ++ +GL PD+++YN +I K +LD T+
Sbjct: 92 KPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVC 151
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
F E++KD C PD+ TY L+ F L LE EMK L + ++
Sbjct: 152 FFEEMKD---MCCE----PDVITYNALINCFCKFGKLPKGLEFFREMKR-NGLKPNVVSY 203
Query: 133 TAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+ +VDA G + + + Y ++RV GL P + Y S++
Sbjct: 204 STLVDAFCKEGMMQQAIKFYV------DMRRV----GLVPNEYTYTSLI 242
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTK 65
I N + N + A+I+ + +++ A + E + +KGL PD +Y L+ K
Sbjct: 331 ISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQG 390
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + +++ + G K D+ Y +L+ G H LQ + EM
Sbjct: 391 NVLEALALRDKMVETGMKL-------DLLAYTSLVWGLSHCNQLQKARSFLEEM 437
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ + +++D A + L+ V +G PD ++YN L++A K K+DV +
Sbjct: 333 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 392
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL SS G P + TY T++ G + ++++ EM+ L D T+++
Sbjct: 393 NQL-------SSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR-KGLKPDIITYSS 444
Query: 135 MVDALLYSGSI 145
+V L G +
Sbjct: 445 LVSGLSREGKV 455
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ + + + A ++L+ + KGL+PD ++Y+ L+S + K+D + F
Sbjct: 405 ITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHD 464
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
L+ G P+ TY ++++G ++ ++ + M K C +T+T
Sbjct: 465 LE-------GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRC---KPTEATYTI 514
Query: 135 MVDALLYSGSIK 146
+++ + Y G K
Sbjct: 515 LIEGIAYEGLAK 526
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
++++R + + + N ++ ++ ++ +A ++L+ ++K PD ++Y ILI A K
Sbjct: 148 QVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKE 207
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ M +++++ G K PD+ TY L+ G L ++ + M S
Sbjct: 208 SGVGQAMKLLDEMRNKGSK-------PDVVTYNVLINGICKEGRLDEAIKFLNNMPS 257
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 36/241 (14%)
Query: 6 EIVNREHWK---LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISAC 61
E+++R+ K + I +IEA+ + + +A ++L+ + KG +PD ++YN+LI+
Sbjct: 180 EVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 239
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK---DLQSLLEIVFE 118
K +LD + F + S G P++ T+ +L D + LL +
Sbjct: 240 CKEGRLDEAIKFLNNM-------PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR 292
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
K C ++ TF +++ L G + A+ I ++ C+ L P L+
Sbjct: 293 -KGCSPSVV---TFNILINFLCRQGLLG----RAIDILEKMPMHGCTPNSLSYNPLLHGF 344
Query: 179 MMHELAAR-VDY-DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
+ R ++Y DI+ S R +PD + L+ A DG+VD+A++ L
Sbjct: 345 CKEKKMDRAIEYLDIMVS--RGCYPDIV----------TYNTLLTALCKDGKVDVAVEIL 392
Query: 237 S 237
+
Sbjct: 393 N 393
>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
Length = 621
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 34/242 (14%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
N++++ E +K + + N ++E ++ +A ++ E ++ KG PD SY IL+ K
Sbjct: 336 NQMID-EDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCK 394
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K+ + + E+++ G PD Y L+ GF + K + ++ ++ EMK+
Sbjct: 395 QAKMKEAVQYFEEMQ-------GAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKA-N 446
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
D T+ A++ + + K + A+ I+ ++++ G+ P H Y MM
Sbjct: 447 GCPPDGKTYNALIKLM----TNKRMPDDAVRIYKKMIEN-----GIKPTTHTYSMMMKSY 497
Query: 184 AARVDYDIVKSPYRRM-----WPDST-------GTISPEVQEEAGHLL---MEAALNDGQ 228
+Y++ + + M PD G IS EAG L +E + Q
Sbjct: 498 FQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQ 557
Query: 229 VD 230
+D
Sbjct: 558 LD 559
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+I N K N + A+++ +A ++ +A +LE++ G EP+++ Y+ LI K
Sbjct: 634 KIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKA 693
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
KLD + ++ K G++P+++TY++L+ K L +L+++ +M SC
Sbjct: 694 AKLD-------EAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSC 746
Query: 123 C-NLILDRSTFTAMVDAL 139
N+++ +T M+D L
Sbjct: 747 APNIVI----YTEMIDGL 760
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 40/164 (24%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTIV +A+I+ +A ++DEA ++ VE G P+ +Y+ LI K K+LD+ +
Sbjct: 679 NTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVL 738
Query: 75 EQLKDNGQKCSSG------------------------------GFHPDIFTYATLLMGFR 104
++ +N C+ G P++ TY ++ GF
Sbjct: 739 SKMLENS--CAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFG 796
Query: 105 HAKDLQSLLEIVFEM--KSCC-NLILDRSTFTAMVDALLYSGSI 145
A + LE+ EM K C N + T+T +++ +G +
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFV----TYTVLINHCCATGHL 836
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+T + VI A R++ A+ + + ++ G+ PD +Y ILI K +
Sbjct: 488 DTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWL 547
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E ++D G P + TY TL+ + AK + S+ +FE+ + T+T
Sbjct: 548 DEMVRD--------GCEPTVVTYTTLIHAYLKAKKV-SVANELFELMIAKGCFPNVITYT 598
Query: 134 AMVDALLYSGSI-KVVGLYA 152
A++D SG+I K +YA
Sbjct: 599 ALIDGYCKSGNIEKACQIYA 618
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 83/174 (47%), Gaps = 22/174 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + A+I+ +A ++D+ ++ E KG P+ ++Y +LI+ C T LD
Sbjct: 782 KPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYA 841
Query: 73 FNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQ-SLLEIVFEMKSCCNLILDRS 130
E++K + P + +Y ++ G++ L LLE V + S ++L
Sbjct: 842 LLEEMKQT--------YWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILL--- 890
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+ ++D + +G ++V AL + E++ ++ + K +LY S+++ +
Sbjct: 891 -YKVLIDNFVKAGRLEV----ALELHKEVIS---ASMSMAAKKNLYTSLIYSFS 936
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 23 VIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
+I+ +A I +A+ L E V G EP ++Y LI A +K KK+ V E +
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELM---- 585
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ G P++ TY L+ G+ + +++ +I M+
Sbjct: 586 ---IAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMR 621
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+I+ +DEA ++ + V KG P+ SYN LI+ K +++D M
Sbjct: 318 DVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLF 377
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++ P+ TY TL+ G H LQ + + EM + C I D T+
Sbjct: 378 EEM-------CRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVA-CGQIPDLVTYRI 429
Query: 135 MVDAL 139
++D L
Sbjct: 430 LLDYL 434
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 80/160 (50%), Gaps = 20/160 (12%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA-CI 62
NE+V+ + N I + V++A + + +A+ +++ + + G+EPD ++Y LI C+
Sbjct: 273 NEMVDSKIMP-NAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCL 331
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+++ + F+ + G P++F+Y TL+ G+ + + + + EM
Sbjct: 332 RSEMDEAVKVFDMMVHK--------GCAPNVFSYNTLINGYCKIERMDKAMYLFEEM--- 380
Query: 123 C--NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
C LI + T+ ++ L + G ++ A+ +F E+V
Sbjct: 381 CRQKLIPNTVTYNTLIHGLCHVGRLQ----DAIALFREMV 416
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N +N +I + R++ A+ +L + K G +PD+ S+ LI C++ + + F
Sbjct: 108 NVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLF 167
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
++ + + GF PD+ YATL+ G
Sbjct: 168 DKMIWE--------GFQPDVVIYATLINGL 189
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ NA+I+A + R+ EA + E + + L+PD ++Y++LI +LD
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD------ 308
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + G S G F PD+ TY+ L+ G+ +K ++ +++ EM ++ + T+T
Sbjct: 309 EAEEMFGFMVSKGCF-PDVVTYSILINGYCKSKKVEHGMKLFCEMSQ-RGVVRNTVTYTI 366
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++ +G + V EI +R+ G+ P Y ++H L
Sbjct: 367 LIQGYCRAGKLNVA--------EEIFRRMVF-CGVHPNIITYNVLLHGLC 407
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKL----DVT 70
N I N ++ + +I++A IL ++K G++ D ++YNI+I K ++ D+
Sbjct: 395 NIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIY 454
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
N Q G PDI+TY T+++G + K L+ + +F
Sbjct: 455 CSLNCQ-----------GLMPDIWTYTTMMLGL-YKKGLRREADALFR 490
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 49/207 (23%)
Query: 31 QRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG-------- 81
R+DEA ++ V KG PD ++Y+ILI+ K+KK++ M ++ G
Sbjct: 305 SRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364
Query: 82 -----QKCSSG---------------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
C +G G HP+I TY LL G ++ L I+ +M+
Sbjct: 365 TILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR---VCS--NPGLWPKPHLY 176
+DA + + +I + G +C GE+ CS GL P Y
Sbjct: 425 ------------NGMDADIVTYNIIIRG---MCKAGEVADAWDIYCSLNCQGLMPDIWTY 469
Query: 177 VSMMHELAARVDYDIVKSPYRRMWPDS 203
+MM L + + +R+M D
Sbjct: 470 TTMMLGLYKKGLRREADALFRKMKEDG 496
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ +I+ A +++ A +I V G+ P+ ++YN+L+ K++ +
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVIL 419
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ NG DI TY ++ G A ++ +I + +C L+ D T+T
Sbjct: 420 ADMQKNGMD-------ADIVTYNIIIRGMCKAGEVADAWDIYCSL-NCQGLMPDIWTYTT 471
Query: 135 MVDALLYSG 143
M+ L G
Sbjct: 472 MMLGLYKKG 480
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 28 REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
R + D Y + V G +P+ + YN +I K+K++D + +++ +
Sbjct: 163 RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD------- 215
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
G PD+ TY +L+ G + +V M + D TF A++DA + G +
Sbjct: 216 GIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK-REIYPDVFTFNALIDACVKEGRV 272
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 38/221 (17%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
++ + + N++++ +A++ +EA +L+ +E G P ++YN LISA +K L+ +
Sbjct: 286 FEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEAL 345
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC------- 123
++++ G K PD+ TY TL+ G + + L EM ++ C
Sbjct: 346 ELKQEMEFRGMK-------PDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTY 398
Query: 124 NLILD----RSTFTAMV---DALLYSGSIKVVGLYA--LCIFGEI--------VKRVCSN 166
N ++ R FT M+ D L +G + V + L +FG+ V +
Sbjct: 399 NALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKK 458
Query: 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPD 202
G P+ YVS++ + +D Y+RM +PD
Sbjct: 459 AGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPD 499
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ + +++D A + L+ V +G PD ++YN L++A K K+DV +
Sbjct: 221 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 280
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL SS G P + TY T++ G + ++++ EM+ L D T+++
Sbjct: 281 NQL-------SSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR-KGLKPDIITYSS 332
Query: 135 MVDALLYSGSI 145
+V L G +
Sbjct: 333 LVSGLSREGKV 343
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ + + + A ++L+ + KGL+PD ++Y+ L+S + K+D + F
Sbjct: 293 ITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHD 352
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
L+ G P+ TY ++++G ++ ++ + M K C +T+T
Sbjct: 353 LE-------GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRC---KPTEATYTI 402
Query: 135 MVDALLYSGSIK 146
+++ + Y G K
Sbjct: 403 LIEGIAYEGLAK 414
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 45 KGLEPDSLSYNILISACIKTKKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+G++ D ++YN L+SAC + D M F + + GG PDI TY+ L+ F
Sbjct: 4 EGIQADIVTYNTLLSACARRGLGDEAEMVF--------RTMNEGGILPDITTYSYLVETF 55
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
L+ + E++ EM+S + D +++ +++A SGSIK A+ +F R
Sbjct: 56 GKLNRLEKVSELLKEMESGGSFP-DITSYNVLLEAHAQSGSIK----EAMGVF-----RQ 105
Query: 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST 204
G P Y +++ YD V+ + M +T
Sbjct: 106 MQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNT 146
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKT 64
+++ +K N +I RE + ++ VE+GL+P++ +Y LI K
Sbjct: 311 KLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKG 370
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
D ++K GF P+I+TY ++ GF +Q + V M +
Sbjct: 371 GSFDRAFELMNKMKQE-------GFLPNIYTYNAVIDGFCKKGKIQEAYK-VLRMATSQG 422
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
L D+ T+T ++ G I YAL +F +V+ C P Y S++
Sbjct: 423 LKFDKITYTILITEHCKQGHIT----YALDLFDRMVENGCC-----PDIEAYTSLI 469
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA 60
FE + +E + N NAVI+ + +I EAY++L + +GL+ D ++Y ILI+
Sbjct: 377 FELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITE 436
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K + + +++ +NG C PDI Y +L+ + + ++ + F+
Sbjct: 437 HCKQGHITYALDLFDRMVENG--CC-----PDIEAYTSLISTYCQQRQMEESQKF-FDKC 488
Query: 121 SCCNLILDRSTFTAMVDALLYSG----SIKVV------GLYALCI-FGEIVKRVCSNPGL 169
L+ + T+T+M+ G +++V G +A I +G ++ +C L
Sbjct: 489 LMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 548
Query: 170 WPKPHLYVSMM 180
LY M+
Sbjct: 549 EEAKALYEGML 559
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+++ A+ + E V+ GL P+ ++Y LI K +KLD E +K +G +
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR------- 562
Query: 91 PDIFTYATLLMGFRHAKDL---QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
P++ TY L+ G + + L +++ E N++ T+TAM+D L +GS +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV----TYTAMIDGLCKNGSTSL 618
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207
AL +F +++++ C P Y S++ L + ++ + + + G I
Sbjct: 619 ----ALEMFNKMIEQGC-----LPNLLTYSSLIRALGQEGKVEEAENLFAEL--ERHGLI 667
Query: 208 SPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240
E+ ++EA + G+V+ A + L I
Sbjct: 668 PDEITYVK---MIEAYIMSGKVEHAFNFLGRMI 697
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 7 IVNREHWKL------NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+++R H L N ++ NAVI A + + +A I++ V E + PD+ +Y +I
Sbjct: 199 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMIL 258
Query: 60 ACIKTKKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ LD + FN+ K+ G P+ TY+TL+ G + + +++ E
Sbjct: 259 GHCRKHDLDSALQVFNQMAKE--------GCEPNTVTYSTLINGLCDSGRVNEAFDLIRE 310
Query: 119 M 119
M
Sbjct: 311 M 311
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 44/254 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
NT+ NA+I E +RI A+ +L + + G P+ ++YN +I CI +
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448
Query: 74 NEQLK------------------DNGQKCSS---------GGFHPDIFTYATLLMGFRHA 106
N L+ D+G S+ GG PD ++Y L+ GF
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
++S + EM L + T+TA++D G K L E +KR
Sbjct: 509 SKMESAFGLFNEMVD-DGLCPNEVTYTALID-----GYCKDEKLDTATSLLEHMKR---- 558
Query: 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND 226
G P Y ++H L + ++ + + M + I P V +++ +
Sbjct: 559 SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG---IFPNVVTYTA--MIDGLCKN 613
Query: 227 GQVDLALDKLSNTI 240
G LAL+ + I
Sbjct: 614 GSTSLALEMFNKMI 627
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+ +G++P+ L YN +I+A K D + E + +K PD FTY ++++G
Sbjct: 207 LSEGVQPNLLIYNAVINALCK----DGNVADAETIM---KKVFESEMSPDTFTYTSMILG 259
Query: 103 FRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSI 145
DL S L++ +M K C + T++ +++ L SG +
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCE--PNTVTYSTLINGLCDSGRV 301
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVT 70
++KL +N +I+ +A +++ A+++ E + +G EP+ ++Y I+I + ++D
Sbjct: 430 NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKA 489
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++++ NG C+ PDI TY TL+ GF + L+ +++++ M
Sbjct: 490 NVLIQKMEANG--CT-----PDIITYNTLMRGFYESNKLEEVVQLLHRM 531
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 5 NEIVNRE-HWKLNTIVMNAVIEASREAQRIDEAYQILES-----------VEKGLEPDSL 52
N+I E + K N I N +++ + R DEA Q+ E +++GL+PD +
Sbjct: 202 NDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMV 261
Query: 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSL 112
++N+LI K K+ E K G SG PD+ TY +L+ GF DL S
Sbjct: 262 TFNVLIDTLCKEGKVI------EAKKLLGVMIESG-IVPDLVTYNSLIEGFCMVGDLNSA 314
Query: 113 LEIVFEMKS 121
E+ M S
Sbjct: 315 RELFVSMPS 323
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ N++IE ++ A ++ S+ KG EPD +SYN+LI+ KT K++ M +
Sbjct: 296 VTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNE 355
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMG 102
+ G++ P++ TY +LL G
Sbjct: 356 MLLVGKR-------PNVITYDSLLKG 374
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NTI+ A+ E+ A + ++ ++ E G+ P S +Y+ILI KT +++ M E
Sbjct: 1364 NTII-KALFESKSRASEVPSWFERMK--ESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 1420
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ + GF P Y +L+ AK E+ E+K C R + M
Sbjct: 1421 EMDEK-------GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSAR-VYAVM 1472
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+ L +G + A+ +F E+ K C+ P + Y ++M LA D S
Sbjct: 1473 IKHLGKAGRLD----DAINMFDEMNKLGCA-----PDVYAYNALMSGLARTGMLDEALST 1523
Query: 196 YRRM 199
RRM
Sbjct: 1524 MRRM 1527
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE + ++ + + +I +A RIDEAY E +G PD++ N +I+
Sbjct: 1277 LFEE---MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMIN 1333
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +LD M ++++ +C P + TY T++ +K S + FE
Sbjct: 1334 FLGKAGRLDDAMKLFQEMET--LRCI-----PSVVTYNTIIKALFESKSRASEVPSWFER 1386
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
+ T++ ++D + ++ A+ + E+ ++ G P P Y S+
Sbjct: 1387 MKESGISPSSFTYSILIDGFCKTNRME----KAMMLLEEMDEK-----GFPPCPAAYCSL 1437
Query: 180 MHELAARVDYDIV 192
+ L YD+
Sbjct: 1438 IDALGKAKRYDLA 1450
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
NE+ H +T+ +A+I A + R D A Q+L E E G++P + Y +LI+ K
Sbjct: 1208 NEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFK 1267
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ E+++ Q C PD+FTY L+ G A + EM+
Sbjct: 1268 FNDAHGALSLFEEMRH--QYC-----RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 1317
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 30/140 (21%)
Query: 29 EAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG------ 81
+A R+D+A + + + K G PD +YN L+S +T LD + +++++G
Sbjct: 1478 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 1537
Query: 82 -------QKCSSGGFH---------------PDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+GG H PD+ +Y T+L HA + +++ EM
Sbjct: 1538 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 1597
Query: 120 KSCCNLILDRSTFTAMVDAL 139
+ D T++++++A+
Sbjct: 1598 NT-LGFEYDLITYSSILEAI 1616
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R +++ I+ + +++ EA+R DEA IL + E G PD SYNIL+ + K
Sbjct: 105 RTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKS 164
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + G CS PD+ Y T++ GF D+ ++ EM
Sbjct: 165 GQADNLLRMMAEGGTVCS-----PDVVAYNTVIDGFFKEGDVNKACDLFKEM 211
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI+ + +++A + E V++G+ PD ++YN ++ A K + +D F
Sbjct: 184 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 243
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ + P+ +TY L+ G+ + + + EM+ +++ D T +
Sbjct: 244 RQMVNK-------RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLSM 295
Query: 135 MVDALLYSGSIK 146
++ +L G IK
Sbjct: 296 LMGSLCKYGKIK 307
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 33/245 (13%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
IFE+ + + L ++ +IE + ++++A+ + S+ KG++P+ ++Y ++IS
Sbjct: 460 IFED---LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L +++++G P+ TY TL+ DL + +++ EM
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGN-------APNDCTYNTLIRAHLRDGDLTASAKLIEEM 569
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
KS C D S+ ++D LL + + R C + G + L
Sbjct: 570 KS-CGFSADASSIKMVIDMLLSA-------------MKRLTLRYCLSKGSKSRQDLL--- 612
Query: 180 MHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239
EL+ + + +M+P +T T S V + A LN DL + S+
Sbjct: 613 --ELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSAELNR---DLRKLRRSSV 667
Query: 240 ITRWK 244
+ ++K
Sbjct: 668 LKKFK 672
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +N +I + AY +L V K G EPD+ ++N LI K+ +
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLV 181
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ +N G PD+ TY +++ G + D L+++ +M+ N+ D T++
Sbjct: 182 DRMVEN-------GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE-RNVKADVFTYST 233
Query: 135 MVDALLYSGSIKVVGLYALCIFGEI 159
++D+L G I A+ +F E+
Sbjct: 234 IIDSLCRDGCIDA----AISLFKEM 254
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
+++ R + + ++I+ +R+D+ ++ ++ K GL ++++Y+IL+ ++
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+ + E+L Q+ S G PD+ TY LL G L+ LEI FE
Sbjct: 417 GKIKLA----EEL---FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEI-FEDLQKSK 468
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHE 182
+ L +T +++ + G KV + L CS P G+ P Y M+
Sbjct: 469 MDLGIVMYTTIIEGMCKGG--KVEDAWNL---------FCSLPCKGVKPNVMTYTVMISG 517
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV 229
L + R+M D + + L+ A L DG +
Sbjct: 518 LCKKGSLSEANILLRKMEEDGNAP-----NDCTYNTLIRAHLRDGDL 559
>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays]
gi|223944573|gb|ACN26370.1| unknown [Zea mays]
gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]
Length = 640
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N I ++I+ + +D+A ++ E V KG PDS YN+LI A +K + D F
Sbjct: 416 VNAIFYTSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTDDACAF 475
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSL 112
++++D+G C ++TY L+ G F+ K+ ++L
Sbjct: 476 YKRMEDDG--CDQ-----TVYTYTILIDGLFKEHKNEEAL 508
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTK 65
++ +E K N + N +++ + A Q+ + V+KG+ P+ SYNI+I K+K
Sbjct: 245 VMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSK 304
Query: 66 KLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
++D M E L N P+ TY++L+ GF + S L+++ EM
Sbjct: 305 RVDEAMNLLREVLHKN--------MVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
D T+T+++DAL + ++ A +F ++ +R G+ P + Y +++ L
Sbjct: 357 PA-DVVTYTSLLDALCKNQNLD----KATALFMKMKER-----GIQPNKYTYTALIDGL 405
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 36 AYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A ++L +E + P+ + YN +I K K ++ ++ + G P++
Sbjct: 134 ALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM-------DARGIFPNVI 186
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
TY+TL+ GF A L ++ EM N+ + T+T ++DAL G +K
Sbjct: 187 TYSTLIYGFCLAGQLMEAFGLLNEM-ILKNINPNVYTYTILMDALCKEGKVK 237
>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E++ E + N+++ E +I +A ++L E E+ +EPD+++ N LI+A K
Sbjct: 317 EVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKI 376
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ M +++ + G K PD FT+ L+ GF ++ S E +FEM
Sbjct: 377 GDMGSAMKVKKKMLEAGLK-------PDQFTFKALIHGFCKLHEVDSAKEFLFEMLD-AG 428
Query: 125 LILDRSTFTAMVDALLYSGSIKVV----------GLYA-LCIFGEIVKRVC 164
ST++ +VD+ + + V GL+ + ++ +++R+C
Sbjct: 429 FSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 479
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I A ++ +++A Q+L +E + + PD +YN LIS K +
Sbjct: 221 NIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQ 280
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAKDLQSLLEI 115
++++ GG PDI TY +L+ GF R DL+ L +
Sbjct: 281 DRME-------RGGVSPDIVTYNSLIYGFCREVNDLEEALRL 315
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKT 64
+++ +K N +I RE + ++ VE+GL+P++ +Y LI K
Sbjct: 203 KLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKG 262
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
D ++K GF P+I+TY ++ GF +Q + V M +
Sbjct: 263 GSFDRAFELMNKMKQE-------GFLPNIYTYNAVIDGFCKKGKIQEAYK-VLRMATSQG 314
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
L D+ T+T ++ G I YAL +F +V+ C P Y S++
Sbjct: 315 LKFDKITYTILITEHCKQGHIT----YALDLFDRMVENGCC-----PDIEAYTSLI 361
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA 60
FE + +E + N NAVI+ + +I EAY++L + +GL+ D ++Y ILI+
Sbjct: 269 FELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITE 328
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K + + +++ +NG C PDI Y +L+ + + ++ + F+
Sbjct: 329 HCKQGHITYALDLFDRMVENG--CC-----PDIEAYTSLISTYCQQRQMEESQKF-FDKC 380
Query: 121 SCCNLILDRSTFTAMVDALLYSG----SIKVV------GLYALCI-FGEIVKRVCSNPGL 169
L+ + T+T+M+ G +++V G +A I +G ++ +C L
Sbjct: 381 LMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 440
Query: 170 WPKPHLYVSMM 180
LY M+
Sbjct: 441 EEAKALYEGML 451
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N +++ +++EA Q+L+ +++ G++PD +SYN LIS +K+ D+ F +
Sbjct: 497 ITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISG--YSKRGDMKDAF--R 552
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++D + + GF P I TY L+ G ++ + E++ EM S + D ST+ +++
Sbjct: 553 VRD---EMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVS-KGITPDDSTYLSII 608
Query: 137 DAL 139
+A+
Sbjct: 609 EAM 611
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ +E + IV NA+I+ ID A+Q+L+ ++ + PD ++YN L+ + K
Sbjct: 452 IQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGK 511
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ +++K G K PD +Y TL+ G+ D++ + EM
Sbjct: 512 VEEARQLLDEMKRRGIK-------PDHISYNTLISGYSKRGDMKDAFRVRDEM 557
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N +I + A I +++ +KGLEPD +YN IS K +L+
Sbjct: 248 KPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLE---- 303
Query: 73 FNEQLKDNGQKCS--SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+ +G C GG P+ TY L+ G+ + DL EM S ++
Sbjct: 304 -----EASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMIS-KGIMASLV 357
Query: 131 TFTAMVDALLYSGSI 145
T+ + AL G +
Sbjct: 358 TYNLFIHALFMEGRM 372
>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
Length = 422
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 11/145 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N V N+++ A E + AY ++ + KG+ PD +Y +L++ + KL F
Sbjct: 145 NVCVYNSLLFALCEVKMFHGAYALVRRMIRKGIVPDKRTYGVLVNGWCSSGKLREAKGFL 204
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++ S GF+P + L+ G +A L+S ++V M L+ D +TF +
Sbjct: 205 EEM-------SKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMMK-EGLVPDVNTFNS 256
Query: 135 MVDALLYSGSIK-VVGLY-ALCIFG 157
MV+A+ +G + V +Y ++C G
Sbjct: 257 MVEAICNAGEVDFCVDMYHSVCKLG 281
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ + +++D A + L+ V +G PD ++YN L++A K K+DV +
Sbjct: 390 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 449
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL SS G P + TY T++ G + ++++ EM+ L D T+++
Sbjct: 450 NQL-------SSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR-KGLKPDIITYSS 501
Query: 135 MVDALLYSGSI 145
+V L G +
Sbjct: 502 LVSGLSREGKV 512
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ + + + A ++L+ + KGL+PD ++Y+ L+S + K+D + F
Sbjct: 462 ITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHD 521
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
L+ G P+ TY ++++G ++ ++ + M K C +T+T
Sbjct: 522 LE-------GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRC---KPTEATYTI 571
Query: 135 MVDALLYSGSIK 146
+++ + Y G K
Sbjct: 572 LIEGIAYEGLAK 583
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
++++R + + + N ++ ++ ++ +A ++L+ ++K PD ++Y ILI A K
Sbjct: 205 QVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKE 264
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ M +++++ G K PD+ TY L+ G L ++ + M S
Sbjct: 265 SGVGQAMKLLDEMRNKGSK-------PDVVTYNVLINGICKEGRLDEAIKFLNNMPS 314
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 36/241 (14%)
Query: 6 EIVNREHWK---LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISAC 61
E+++R+ K + I +IEA+ + + +A ++L+ + KG +PD ++YN+LI+
Sbjct: 237 EVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 296
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK---DLQSLLEIVFE 118
K +LD + F + S G P++ T+ +L D + LL +
Sbjct: 297 CKEGRLDEAIKFLNNM-------PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR 349
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
K C ++ TF +++ L G + A+ I ++ C+ L P L+
Sbjct: 350 -KGCSPSVV---TFNILINFLCRQGLLG----RAIDILEKMPMHGCTPNSLSYNPLLHGF 401
Query: 179 MMHELAAR-VDY-DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
+ R ++Y DI+ S R +PD + L+ A DG+VD+A++ L
Sbjct: 402 CKEKKMDRAIEYLDIMVS--RGCYPDIV----------TYNTLLTALCKDGKVDVAVEIL 449
Query: 237 S 237
+
Sbjct: 450 N 450
>gi|62320562|dbj|BAD95174.1| hypothetical protein [Arabidopsis thaliana]
Length = 468
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ I N +I+ IDEAY + + E G+EPD +YN LIS K L+ V F
Sbjct: 47 DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLVLNRVLQLF 106
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L G PD+++Y TL+ + +I+ E L+ T+
Sbjct: 107 DEMLHS--------GLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYN 158
Query: 134 AMVDALLYSG 143
++DAL SG
Sbjct: 159 ILLDALCKSG 168
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A ++ D A ++ + ++ ++P+ ++YNILI+ K++++ +LK +
Sbjct: 158 NILLDALCKSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKS 217
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G+ P+ TY T+L + K ++ L++ +MK D A+V AL+
Sbjct: 218 -------GYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKK-EGYTFDGFANCAVVSALI 269
Query: 141 YSG 143
+G
Sbjct: 270 KTG 272
>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 5 NEIVNREHWKLNTIVMNAVIEAS-REAQRIDEAYQILESVEKGLEPDSLSYNILISACIK 63
NE++++ +K + + N ++E R QR D + KG PD SY ILI +
Sbjct: 256 NEMIDK-GFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCR 314
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K++ + + +++ D+G K PD Y L+ GF + K + + +++ EMK
Sbjct: 315 QSKMEEAVEYFQEMIDSGCK-------PDAAVYTCLITGFGNRKRMDMVYDLLKEMKE-- 365
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
D L Y+ IK++ + + + + G+ P H Y +M
Sbjct: 366 --------EGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSY 417
Query: 184 AARVDYDIVKSPYRRM 199
+Y++ ++ + M
Sbjct: 418 FQTRNYEMGRAVWDEM 433
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 23/204 (11%)
Query: 32 RIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R EA +L+ VEKG P L+YN ++ IK + + ++ C SG
Sbjct: 573 RTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREM------CESG-VS 625
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
P++ TY TL+ GF + L++ EM++ L LD + + A++D I+
Sbjct: 626 PNVITYTTLINGFCKNNNTDLALKMRNEMRN-KGLELDIAAYGALIDGFCKKQDIET--- 681
Query: 151 YALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210
A +F E++ + GL P +Y S++ + + + +RM + IS +
Sbjct: 682 -ASWLFSELL-----DGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEG---ISCD 732
Query: 211 VQEEAGHLLMEAALNDGQVDLALD 234
+Q L++ L +G++ LALD
Sbjct: 733 LQTYT--TLIDGLLKEGRLVLALD 754
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACI 62
NE+ N+ +L+ A+I+ + Q I+ A + E ++ GL P+S+ YN LIS
Sbjct: 651 RNEMRNK-GLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYR 709
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
++ + +++ G C D+ TY TL+ G L L++ EM S
Sbjct: 710 NLNNMEAALNLQKRMLGEGISC-------DLQTYTTLIDGLLKEGRLVLALDLYSEM-SA 761
Query: 123 CNLILDRSTFTAMVDALLYSGSIK 146
+I D +T +++ L G ++
Sbjct: 762 KGIIPDIIIYTVLINGLCGKGQLE 785
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N+++ A E+ + DEA E GL P+ +YNILI + K+ D + K+
Sbjct: 93 NSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFD-------KAKE 145
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF PD+F+Y TL+ + L++ EM + D + + ++D
Sbjct: 146 LLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE-RGVTPDVACYNILIDGF 204
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
G I L A EI +R+ P ++P Y M++ L +D + RM
Sbjct: 205 FKKGDI----LNA----SEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 256
Query: 200 WPDSTG 205
+ G
Sbjct: 257 KKNERG 262
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ N +I +A+R EAY ++ E ++KG +P+ ++Y++L++ + KKLD+ +
Sbjct: 474 VVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWC 533
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
Q + GF PD+ + ++ G + ++ L++ EMK
Sbjct: 534 QALEK-------GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 571
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N V NAVI A ++++A + + V KG P ++YN LI+ K ++
Sbjct: 436 KPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYA 495
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
+++ G K P++ TY+ L+ G K L L +
Sbjct: 496 LVKEMLQKGWK-------PNMITYSLLMNGLCQGKKLDMALNL 531
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T +++I R+DE +L+ + K G +P+ N +I+ ++ KL+
Sbjct: 402 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLE----- 456
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ L+ G S G F P + TY TL+ G A+ +V EM
Sbjct: 457 -DALRFFGNMVSKGCF-PTVVTYNTLINGLSKAERFSEAYALVKEM 500
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V N ++ A RI+E ++ + +EK +SYNILI + K+D + E
Sbjct: 299 DVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWE 358
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
L + + C + D TY L+ G L L I+ E ++ LD +++M
Sbjct: 359 LLPE--KDCCA-----DSMTYGVLVHGLCKNGYLNKALSILEEAENGRG-DLDTFAYSSM 410
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
++ L G + V + ++ K C KP+ YV
Sbjct: 411 INGLCREGRLDEVA----GVLDQMTKHGC-------KPNPYV 441
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 32/134 (23%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N +I+ + I A +I E + KG + P+ SYN++I+ K K D + ++K
Sbjct: 198 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 257
Query: 79 DN--GQK-----------CSSG---------------GFHPDIFTYATLLMGFRHAKDLQ 110
N GQ C SG G PD+ Y T+L G+ A ++
Sbjct: 258 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 317
Query: 111 SLLEI--VFEMKSC 122
LE+ V E + C
Sbjct: 318 ECLELWKVMEKEGC 331
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R +++ I+ + +++ EA+R DEA IL + E G PD SYNIL+ + K
Sbjct: 141 RTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKS 200
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ + G CS PD+ Y T++ GF D+ ++ EM +
Sbjct: 201 GQADDLLRMMAEGGTVCS-----PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-RGIPP 254
Query: 128 DRSTFTAMVDAL 139
D T++++V AL
Sbjct: 255 DLVTYSSVVHAL 266
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI+ + +++A + E V++G+ PD ++Y+ ++ A K + +D F
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ + G PD +TY L+ G+ + + + EM+ +++ D
Sbjct: 280 RQMVNKG-------VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-QSILPDVVALNT 331
Query: 135 MVDALLYSGSIK 146
++ +L G IK
Sbjct: 332 LMGSLCKYGKIK 343
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
+F+E + R+ + + +N ++ + + +I EA + +++ KG PD SY I+++
Sbjct: 313 VFKE---MRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLN 369
Query: 60 A-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K +D+T F+ L D G PDI+T+ L+ + + L + I E
Sbjct: 370 GYATKGCLVDMTDLFDLMLGD--------GIAPDIYTFNVLIKAYANCGMLDKAMIIFNE 421
Query: 119 MK 120
M+
Sbjct: 422 MR 423
>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 805
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVT 70
H K NT+ N +I+ ++ R+ A+++L+ + ++G P+ ++YN L+ A K +D
Sbjct: 425 HCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKA 484
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+ KD G PD+ TY TL+ G L+ +++F+ L
Sbjct: 485 IALVNNFKDQ-------GIQPDMHTYNTLVDGLCKQGRLKD-AQLIFQDLLIKGYNLPTW 536
Query: 131 TFTAMVDALLYSG 143
T+ M++ L G
Sbjct: 537 TYNIMINGLCLEG 549
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQ-ILESVEKGL--------EPDSLSYNILISACIKTKK 66
N N +++A + +I EA I++ V++ L +P+++SYN LI K+ +
Sbjct: 386 NVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGR 445
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
L +Q++D GQ P++ TY +LL + + +V K +
Sbjct: 446 LSHAWKLLDQMRDRGQP-------PNVITYNSLLHALCKNHHVDKAIALVNNFKD-QGIQ 497
Query: 127 LDRSTFTAMVDALLYSGSIK 146
D T+ +VD L G +K
Sbjct: 498 PDMHTYNTLVDGLCKQGRLK 517
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ +A+RID+A +++E V++GL+P +++YN +++ K L
Sbjct: 509 SAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADIL 568
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E + N GF D+ TY TL+ G A Q L+++ M+
Sbjct: 569 ETMTAN-------GFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 607
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
N++V+R +T N +I A R++EA + E KGL PD ++NILI+A K
Sbjct: 359 NQMVDRGCLP-DTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCK 417
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-- 121
+ + E++K S G PD TY L+ L + L+++ EM+S
Sbjct: 418 VGDPHLGIRLFEEMK-------SSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG 470
Query: 122 CCNLILDRSTFT--AMVDAL 139
C RST T ++DAL
Sbjct: 471 C-----PRSTVTYNTIIDAL 485
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTK 65
+ RE + V+ + +E+ +R D+A ++ + G++ D+ YN L++ +
Sbjct: 115 MRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGS 174
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
++ + ++ D G PD+ T TL+ A +++ + ++ EM S +
Sbjct: 175 RMKLLESVYNEMTDRG-------IQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHA-V 226
Query: 126 ILDRSTFTAMVDALLYSGSIK 146
D +TFT ++ + GSI+
Sbjct: 227 APDETTFTTLMQGFIEEGSIE 247
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-----EKGLEPDSLSYNILISACIKTKKLDVT 70
+T V N ++ E R+ ++LESV ++G++PD ++ N LI A + ++
Sbjct: 159 DTAVYNHLLNVLAEGSRM----KLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTA 214
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ E++ SS PD T+ TL+ GF +++ L + +M
Sbjct: 215 VLMLEEM-------SSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKM 256
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 18 IVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ +N +I + R+++A I + + G EPD ++YN + + + + +
Sbjct: 266 VTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDL 325
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
+ G PD+FTY T++ +L IV +M + C + D +TF
Sbjct: 326 MLQEGHD-------PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC---LPDTTTFNT 375
Query: 135 MVDAL 139
++ AL
Sbjct: 376 LIVAL 380
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+++G +PD +YN +I+ K +LD Q+ D G C PD T+ TL++
Sbjct: 327 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRG--CL-----PDTTTFNTLIVA 379
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
L+ L++ E+ + L D TF +++AL G
Sbjct: 380 LCSQNRLEEALDLAREL-TVKGLSPDVYTFNILINALCKVG 419
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N V+ R+A R D+ + E +E G+EP ++YN L+ + +K + D ++++
Sbjct: 1088 NRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMET 1147
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT--AMVD 137
G C P+ TY ++ G DL+ E+V M+ L S+FT ++
Sbjct: 1148 RGSGCL-----PNDVTYNVVITGLTRKGDLEEAAELVEGMR----LSKKASSFTYNPLIT 1198
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
LL G +K V Y L + E N G+ P Y +M+H L
Sbjct: 1199 GLLARGCVKKV--YDLQLEME-------NEGIMPTVVTYNAMIHGL 1235
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I A R A + E +E+GL + +Y +LI K + M F
Sbjct: 1504 NEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFY 1563
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
++ N G HPD T+ LL GF
Sbjct: 1564 FEMHQN-------GIHPDYLTHKALLKGF 1585
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 30/158 (18%)
Query: 33 IDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A+++ E + +G+ D+++YNILI KT L + K+ K S G P
Sbjct: 1381 IARAFELREVLMLEGISSDTVTYNILIHGLCKTGNL-------KDAKELQMKMVSNGLQP 1433
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV-DALLYSGSIKVVGL 150
D TY L+ HA + LL R F M+ D LL S V +
Sbjct: 1434 DCITYTCLI----HAHCERGLLREA------------RKIFNNMISDGLLPSAVTFTVII 1477
Query: 151 YALCIFGEIVK-----RVCSNPGLWPKPHLYVSMMHEL 183
+A C G + R G+ P Y ++H L
Sbjct: 1478 HAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 1515
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 22/151 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS-----ACIKTKKLDVT 70
N + N VI ++EA +++E + + S +YN LI+ C+K K D+
Sbjct: 1155 NDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVK-KVYDLQ 1213
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+ + G P + TY ++ G + +++ EM++ L+ D
Sbjct: 1214 LEMENE-----------GIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRA-MGLLPDVI 1261
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
T+ ++++ +G++K AL +FG++ +
Sbjct: 1262 TYNSLLNGYCKAGNLK----EALLLFGDLRR 1288
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 35/198 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N+++ +A + EA + + + GL P L+YNILI + L+
Sbjct: 1259 DVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILK 1318
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS------------- 121
E++ + G C P++ TY L+ G + + L E EM S
Sbjct: 1319 EEMGEQG--CL-----PNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTR 1371
Query: 122 -CCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFG-----------EIVKRVCSNPG 168
C LIL D + + + L+ G Y + I G E+ ++ SN G
Sbjct: 1372 ICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSN-G 1430
Query: 169 LWPKPHLYVSMMHELAAR 186
L P Y ++H R
Sbjct: 1431 LQPDCITYTCLIHAHCER 1448
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 14 KLNTIVMNAVIEA--------SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
K N + NAVI+A +R A+ DE E + +G+E D +YN L+ A K
Sbjct: 167 KPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGG 226
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
++D+ ++ P++ TY+T++ G+ A L L + EMK ++
Sbjct: 227 QMDLAFQIMSEMPRK-------HIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK-FASI 278
Query: 126 ILDRSTFTAMV 136
LDR ++ ++
Sbjct: 279 GLDRVSYNTLL 289
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 30/166 (18%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68
R+H N + + VI+ +A R+DEA + ++ + D +SYN L+S K + +
Sbjct: 240 RKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFE 299
Query: 69 VTMPFNEQLKDNGQKCSS-------GGF---------------------HPDIFTYATLL 100
+ ++++ +G K + GG+ P++ TY+TL+
Sbjct: 300 EALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLI 359
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ Q +E+ E K L D ++A++DAL +G ++
Sbjct: 360 DVYSKGGLYQEAMEVFREFKK-AGLKADVVLYSALIDALCKNGLVE 404
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT V N +I+ + EA ++++ + ++G++PD +Y I+AC K +
Sbjct: 687 NTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDM------- 739
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ Q+ G P+I TY TL+ G+ A + L+ EMKS L D++ +
Sbjct: 740 QRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKS-AGLKPDKAVYHC 798
Query: 135 MVDALLYSGSIKVVGLYA 152
++ +LL S+ +Y+
Sbjct: 799 LMTSLLSRASVAEEYIYS 816
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E V K GL+PD + YN +I A +D + ++++ + P
Sbjct: 497 AFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHR-------PTTR 549
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
T+ ++ GF + D++ LEI F+M I TF A++ L+ ++ A+
Sbjct: 550 TFMPIIHGFARSGDMRRALEI-FDMMRWSGCIPTVHTFNALILGLVEKCQME----KAVE 604
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
I E+ S G+ P H Y ++MH A+ D
Sbjct: 605 ILDEM-----SLAGISPNEHTYTTIMHGYASLGD 633
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
++DEA ++ E ++ GL P+ +++ LI K +K+D+ M +Q+ S G
Sbjct: 221 KLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM-------LSQGLS 273
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
PD+ TY TL+ G +L+ + +++ EM L D+ ++T ++D G +++
Sbjct: 274 PDLITYNTLIYGLCKKGELKQVHDLIDEM-IMNGLKPDKISYTTLIDGSCKEGDLEI 329
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 18/189 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I + +++D A +I + + +GL PD ++YN LI K +L
Sbjct: 240 NGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLI 299
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ NG K PD +Y TL+ G DL+ LE+ +M ++ LD +TA
Sbjct: 300 DEMIMNGLK-------PDKISYTTLIDGSCKEGDLEIALELRNKMIQ-ESIRLDDVAYTA 351
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L G E + R + GL P Y +++E + D
Sbjct: 352 LISCLCREGRAGD---------AEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASK 402
Query: 195 PYRRMWPDS 203
R M D
Sbjct: 403 LLREMQRDG 411
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +S+N LI+ IK LD + +G + PD++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQ-------PDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
TY+ L+ G L E+ EM L+ + TFT ++
Sbjct: 208 TYSILINGLCKEGKLDEANELFNEMLD-NGLVPNGVTFTTLI 248
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N ++ +A +I EA ++ + V + G P+S +Y+ILI K + L++
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 373
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G +P +F Y TL+ L+ + EM + N D +F
Sbjct: 374 CEMRTH-------GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN-ANCEPDIISFNT 425
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
M+D L +G + V + ++V+ GL P + ++++ L+ + D KS
Sbjct: 426 MIDGTLKAGDFQFVKELQM----KMVEM-----GLRPDALTFSTLINRLSKLGELDEAKS 476
Query: 195 PYRRM 199
RM
Sbjct: 477 ALERM 481
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ + +A ++ ++ VE GL PD+L+++ LI+ K +LD
Sbjct: 419 DIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELD------ 472
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K ++ + GF PD Y +LL G D ++ ++ +M + +LDR +
Sbjct: 473 -EAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAA-KGTVLDRKIVST 530
Query: 135 MVDALLYS 142
++ L +S
Sbjct: 531 ILTCLCHS 538
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I + R+ +A +I + V+KG + ++YN+L+ C+K K+ M
Sbjct: 279 NVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELW 338
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+Q+ D GF P+ FTY+ L+ GF + L + EM++
Sbjct: 339 KQVLDL-------GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRT 378
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ R+ + + N +I +A+++ EA +L +E G P+S++ L+ K +
Sbjct: 24 MGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGR 83
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+D M E +K G F D+ Y TL+ GF + +L E+ EM
Sbjct: 84 MDEAMELLEAMKKKG-------FDADVVLYGTLISGFCNNGNLDRGKELFDEM 129
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + + +A ++++++ ++G PD +S+N LI+A +K+ L + +L
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV--EL 284
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
D + G PD TY TLL +L ++ VFE D D
Sbjct: 285 LD---MVRNSGLRPDAITYNTLLSACSRDSNLDGAVK-VFE---------DMEAHRCQPD 331
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYR 197
Y+ I V G L E + G +P Y S+++ A + + VK Y+
Sbjct: 332 LWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQ 391
Query: 198 RMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+M G E + ++ GQ+DLAL
Sbjct: 392 QMQKMGFGK-----DEMTYNTIIHMYGKQGQLDLAL 422
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I EA ++ +E KG PD+++YN L+ A + + E++K+
Sbjct: 336 NAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERN-------TEKVKE 388
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
Q+ GF D TY T++ + L L++ +MK D T+T ++D+L
Sbjct: 389 VYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSL 448
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVT 70
++K+ + N++++ + + Q+ + + E GLEPD +YN LI + ++ +
Sbjct: 922 NFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEG 981
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+Q+++ G P + TY +L+ F K L+ E +FE L LDRS
Sbjct: 982 YLLMQQMRNL-------GLDPKLDTYKSLISAFGKQKCLEQ-AEQLFEELLSKGLKLDRS 1033
Query: 131 TFTAMVDALLYSGS 144
+ M+ SGS
Sbjct: 1034 FYHTMMKISRDSGS 1047
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K ++ N++I+ + + LE + +G PD +SYN LI +K + +
Sbjct: 572 KPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFG 631
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDR 129
+++++ GG PD+FTY ++L GF K+ +++L + E + DR
Sbjct: 632 LVKKMEE-----KQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIER----GVNPDR 682
Query: 130 STFTAMVDALL 140
ST+T++++ +
Sbjct: 683 STYTSLINGFV 693
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACI 62
NE++ ++ ++ + N ++ + + + EA ++ E E+GL PDS + ILI
Sbjct: 423 RNEML-QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHC 481
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K L M +++K+ K D+ TY TLL GF D+ + EI +M S
Sbjct: 482 KLGNLQNAMELFKKMKEKRIKL-------DVVTYNTLLDGFGKVGDIDTAKEIWADMVS- 533
Query: 123 CNLILDRSTFTAMVDALLYSGSI 145
++ +F+ +V+AL G +
Sbjct: 534 KEILPTPISFSILVNALCSKGHL 556
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 21/147 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+ + N +I A ++EA++++ ++ KG P +YN +I+ K K + F
Sbjct: 259 DIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVF 318
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E L+ G PD TY +LLM D I +M+S +++ D F+
Sbjct: 319 AEMLRS--------GLSPDSTTYRSLLMEACKKGDAVETENIFSDMRS-RDVVPDLVCFS 369
Query: 134 AMVD----------ALLYSGSIKVVGL 150
+M+ AL+Y S+K GL
Sbjct: 370 SMMSLFTRSGNLDKALMYFNSVKEAGL 396
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
I++E ++R +N +N ++ A + ++++ L V EKG+ PD ++YN LIS
Sbjct: 212 IYQE---ISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLIS 268
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAK 107
A ++ + S GF P ++TY T++ G +H K
Sbjct: 269 AYSSQGLMEEAFELMHAM-------PSKGFSPGVYTYNTVINGLCKHGK 310
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
+E ++ + + ++ NA+I + ++ A++I + + + G+ + + NI+++A
Sbjct: 175 YEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNA 234
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K K++ F ++++ G +PDI TY TL+ + ++ E++ M
Sbjct: 235 LCKDGKMEKVGTFLSEVQEKG-------VYPDIVTYNTLISAYSSQGLMEEAFELMHAMP 287
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
S T+ +++ L G + A +F E+++ GL P Y S++
Sbjct: 288 S-KGFSPGVYTYNTVINGLCKHGKYE----RAKEVFAEMLR-----SGLSPDSTTYRSLL 337
Query: 181 HELAARVD 188
E + D
Sbjct: 338 MEACKKGD 345
>gi|255661004|gb|ACU25671.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 369
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 19/175 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V NA++ A RI++ +++ E + + S+N +I K++ M E
Sbjct: 24 DAVVYNAMLNGFYRAGRIEDCFELWEMMGREGRRSVASFNTMIRVLFDNGKVEEAMSIRE 83
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+ + GF D TY TL+ GF + + L+ V E+ +LD ++AM
Sbjct: 84 LM-------AKSGFVEDSKTYGTLVNGFCKNRYINKSLQ-VLEIAEQKGGVLDAFAYSAM 135
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
++AL ++ A+C+ ++K C P +Y +++ L A+++D
Sbjct: 136 INALCKEAKLE----KAVCVLNGMIKSGCK-----PNTCVYNALIKGLVGASKLD 181
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVT 70
H + + N +I + R EAY ++ E +EKGL+P ++Y++L+ K+++
Sbjct: 194 HSPPDIVTYNILINGLFKGDRFGEAYDLVKEMLEKGLDPSVITYSLLMKGLCLGDKVEMA 253
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ Q+ + GF PD+ + L+ G Q L + +M
Sbjct: 254 LQLWNQV-------TKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDM 295
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 31/233 (13%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
EI ++ L+ +A+I A + ++++A +L ++ G +P++ YN LI +
Sbjct: 118 EIAEQKGGVLDAFAYSAMINALCKEAKLEKAVCVLNGMIKSGCKPNTCVYNALIKGLVGA 177
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFH--PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
KLD + ++ G H PDI TY L+ G ++V EM
Sbjct: 178 SKLDDAIRVFHEM---------GTTHSPPDIVTYNILINGLFKGDRFGEAYDLVKEM--- 225
Query: 123 CNLILDRS--TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
LD S T++ ++ L +++ AL ++ ++ K+ G P ++ ++
Sbjct: 226 LEKGLDPSVITYSLLMKGLCLGDKVEM----ALQLWNQVTKK-----GFKPDVQMHNILI 276
Query: 181 HELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
H L + + S Y M + +P + + + LM+ DG + AL
Sbjct: 277 HGLCSVGKTQLALSLYLDM---NRWNCAPNLVTQ--NTLMQGFYKDGNIRNAL 324
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
++DEA ++ E ++ GL P+ +++ LI K +K+D+ M +Q+ S G
Sbjct: 221 KLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM-------LSQGLS 273
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
PD+ TY TL+ G +L+ + +++ EM L D+ ++T ++D G +++
Sbjct: 274 PDLITYNTLIYGLCKKGELKQVHDLIDEM-IMNGLKPDKISYTTLIDGSCKEGDLEI 329
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 18/189 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I + +++D A +I + + +GL PD ++YN LI K +L
Sbjct: 240 NGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLI 299
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ NG K PD +Y TL+ G DL+ LE+ +M ++ LD +TA
Sbjct: 300 DEMIMNGLK-------PDKISYTTLIDGSCKEGDLEIALELRNKMIQ-ESIRLDDVAYTA 351
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L G E + R + GL P Y +++E + D
Sbjct: 352 LISCLCREGRASD---------AEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASK 402
Query: 195 PYRRMWPDS 203
R M D
Sbjct: 403 LLREMQRDG 411
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +S+N LI+ IK LD + +G + PD++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQ-------PDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
TY+ L+ G L E+ EM L+ + TFT ++
Sbjct: 208 TYSILINGLCKEGKLDEANELFNEMLD-NGLVPNGVTFTTLI 248
>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L++ N +I +A+ A +I+E +EK G PD +SY+ I+A + K
Sbjct: 224 LDSSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAV 283
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+++++ G K P++ TY T++ A+ L LE+ +MK + D ++
Sbjct: 284 FDEMQEKGCK-------PNVITYTTVMHALGKARQLNEALEVYEKMKR-NGCLPDSKFYS 335
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKR-VCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
+++ L SG IK A +F ++ K+ VC N LW +Y +M+ A
Sbjct: 336 SLIYVLSQSGRIKD----AWDVFEDMEKQGVCRN--LW----VYNTMISSACAHSQGGSA 385
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLM 220
RM DS P+V+ A L M
Sbjct: 386 LKLLERMEGDSC---KPDVKTYAPLLKM 410
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
+N +++A + +++A+ + + DS S+NILI K + V E+++
Sbjct: 194 ALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHGYCKARMFVVARKIMEEME 253
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMV 136
+G FHPD+ +Y+ + + KD +++ + EM K C ++ T+T ++
Sbjct: 254 KHG-------FHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVI---TYTTVM 303
Query: 137 DAL 139
AL
Sbjct: 304 HAL 306
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ + + N +I + + A +LE + K G P+SLSYN L+ + KK+D
Sbjct: 341 RKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMD 400
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+ + E + S G +PDI TY TLL + + +EI+ ++ K C ++
Sbjct: 401 RAIEYLEIM-------VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVL 453
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA-- 184
+ T+ ++D L G + YA+ + E+ ++ GL P Y +++ L
Sbjct: 454 I---TYNTVIDGLTKVGKTE----YAVELLEEMRRK-----GLKPDIITYSTLLRGLGRE 501
Query: 185 ARVDYDI 191
+VD I
Sbjct: 502 GKVDEAI 508
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
E++ R + + N ++ + ++ ++ EA ++L+ +++ PD ++Y ILI A
Sbjct: 197 EVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCND 256
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ M ++++ G K PD+ TY L+ G L ++ + M S
Sbjct: 257 SGVGQAMKLLDEMRKKGCK-------PDVVTYNVLINGICKEGRLDEAIKFLNNMPS 306
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 3 EENEIVNREHWK---LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILI 58
E E+++R+ + + I +IEA+ + +A ++L+ + +KG +PD ++YN+LI
Sbjct: 226 EAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 285
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
+ K +LD + F + G K P++ T+ +L
Sbjct: 286 NGICKEGRLDEAIKFLNNMPSYGCK-------PNVITHNIIL 320
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I ++I + + +A +I+E +E G PD ++YN+LI K+ ++D +
Sbjct: 140 DVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVL 199
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
E++ PD+ TY T+L + L+ +E++
Sbjct: 200 ERM----------SVAPDVVTYNTILRSLCDSGKLKEAMEVL 231
>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A + +++A + +S+ + + PD SY ++SA + ++ F +++K
Sbjct: 353 NILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKV 412
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G F P+I TY T++ G+ A D++ ++E V+E + +++ T ++DA
Sbjct: 413 DG-------FEPNIVTYGTMIKGYAKANDVEKMME-VYEKMRLSGIKANQTILTTIMDA- 463
Query: 140 LYSGSIKVVG 149
SG K G
Sbjct: 464 --SGRCKDFG 471
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 28 REAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86
++A D+A ++ S V KG+ +++YN L+S K++ ++ D Q+
Sbjct: 258 KKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFETNYKEVS-------KIYDQMQRS-- 308
Query: 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
G PD+ +YA L+ + A+ + L VFE + + ++DA SG ++
Sbjct: 309 -GIQPDVVSYALLIKAYGRARREEEALS-VFEEMLDAGVRPTHKAYNILLDAFAISGMVE 366
Query: 147 VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPD 202
A +F + +R P LW Y +M+ D + + ++R+ D
Sbjct: 367 ----QAKTVFKSM-RRDRIFPDLWS----YTTMLSAYVNASDMEGAEKFFKRIKVD 413
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R +++ I+ + +++ EA+R DEA IL + E G PD SYNIL+ + K
Sbjct: 141 RTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKS 200
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ + G CS PD+ Y T++ GF D+ ++ EM +
Sbjct: 201 GQADDLLRMMAEGGTVCS-----PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-RGIPP 254
Query: 128 DRSTFTAMVDAL 139
D T++++V AL
Sbjct: 255 DLVTYSSVVHAL 266
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI+ + +++A + E V++G+ PD ++Y+ ++ A K + +D F
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ + G PD +TY L+ G+ + + + EM+ +++ D
Sbjct: 280 RQMVNKG-------VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-QSILPDVVALNT 331
Query: 135 MVDALLYSGSIK 146
++ +L G IK
Sbjct: 332 LMGSLCKYGKIK 343
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L + N +I A+R EAY + E +EKG +PD ++Y+ LI ++ +D +
Sbjct: 494 LTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRL 553
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI--VFEMKSCCNLI 126
Q D G K PDI Y ++ + ++ L++ K C NL+
Sbjct: 554 WHQFLDTGHK-------PDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKCVNLV 601
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E++N+ K N+ V N +I+ + ++D A ++ + KG +SYNILI+ ++
Sbjct: 450 ELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRA 509
Query: 65 KKL-DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
++ + NE L+ G+ PDI TY+TL+ G + + + L +
Sbjct: 510 ERFREAYDCVNEMLEK--------GWKPDIITYSTLIGGLYESNMMDAALRL 553
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ + N +I+ + +A ++ E + E+ + P +SYN++IS K + +
Sbjct: 217 DVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEI 276
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++K N +KC D+FTY+ L+ G A DL ++ EM + D T
Sbjct: 277 WERMKKNERKC-------DLFTYSALIHGLSEAGDLGGARKVYEEMVG-RGVRPDVVTCN 328
Query: 134 AMVDALLYSGSIK 146
AM++ L +G+++
Sbjct: 329 AMLNGLCKAGNVE 341
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N +++ A +A + L + + KG+ PD ++YN LI+ IK + +D +
Sbjct: 448 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 507
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++++ G PD+ TY +L GF +Q I+ +M + DRST+T+++
Sbjct: 508 MENS-------GLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE-RGVNPDRSTYTSLI 559
Query: 137 DALLYSGSIK 146
+ + ++K
Sbjct: 560 NGHVTQNNLK 569
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK-LDVTMPF 73
+ + N +I A ++EA+++++S+ KGL+P +YN +I+ KT K L
Sbjct: 131 DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 190
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E LK G PD TY LL+ ++ I EM S ++ D +F+
Sbjct: 191 DEMLKI--------GMSPDTATYNILLVECCRNDNMMDAERIFDEMPS-QGVVPDLVSFS 241
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
A++ L +G + AL F R N GL P +Y
Sbjct: 242 ALIGLLSKNGCLD----QALKYF-----RDMKNAGLAPDNVIY 275
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
I++E V R ++N +N +I A + Q+I+ L +E KG+ PD ++YN LI+
Sbjct: 84 IYQE---VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 140
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
A + L+ + + S G P +FTY ++ G
Sbjct: 141 AYCRQGLLEEAFELMDSM-------SGKGLKPCVFTYNAIINGL 177
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 33 IDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+D A++I E V G++ + + NI+I+A K +K++ T F L D +K G P
Sbjct: 78 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSF---LSDMEEK----GVFP 130
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRSTFT--AMVDALLYSG 143
D+ TY TL+ +A Q LLE FE M S L FT A+++ L +G
Sbjct: 131 DVVTYNTLI----NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 181
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + N ++ + + + EA ++ E E+G+ PD ++ LI+ K ++ +
Sbjct: 305 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + K PD+ TY TL+ GF +++ + E+ +M S
Sbjct: 365 FEMMIQRNLK-------PDVVTYNTLIDGFCKGSEMEKVNELWNDMIS 405
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ A IDEA ++LE V GL+P+S SYN L+ K ++D
Sbjct: 169 DVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLF 228
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ N G P + TY T+L G K E+ M
Sbjct: 229 RKMLSN-------GITPGVVTYNTILHGLFQTKRFSEAKELYLNM 266
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N+ N ++ +A RID AY + + G+ P ++YN ++ +TK+
Sbjct: 202 KPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKE 261
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCN--LILDR 129
+ ++G K I+TY T+L G + + ++ F+M +S C+ L L+
Sbjct: 262 LYLNMINSGTKWG-------IYTYNTILNGLCKS----NCVDEAFKMFQSLCSKGLQLNI 310
Query: 130 STFTAMVDALLYSG 143
TFT M+ ALL G
Sbjct: 311 ITFTIMIGALLKGG 324
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKL-DVTMPF 73
N + N A + ID+A I + + GL PD++SY LI A K ++ D + F
Sbjct: 29 NHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKF 88
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
N+ + + G P+I +++L+ G + + E+ FEM
Sbjct: 89 NQMINE--------GVTPNIVVFSSLVYGLCSIDKWEKVEELFFEM 126
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
NTI+ N E R+ E ++++S+E G+ PD +SYN LI +D
Sbjct: 138 FNTILCNLCKEG-----RVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKL 192
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + S G P+ F+Y TLL G+ A + S + +M S
Sbjct: 193 LEGM-------VSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLS 233
>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
Length = 715
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA 60
+E +++ +E + N NA I++ + R EA ++L+ GL+ D+++Y ILIS
Sbjct: 427 YELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISE 486
Query: 61 -CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
C + + + F++ K G PD+ TY TL+ F + ++ E +F
Sbjct: 487 LCRRADTREALVFFSKMFK--------AGVQPDMHTYNTLIAAFSRQRRMEE-SEKLFAE 537
Query: 120 KSCCNLILDRSTFTAMV 136
L+ + T+T+M+
Sbjct: 538 AVGLGLVPTKETYTSMI 554
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N +++ A +A + L + + KG+ PD ++YN LI+ IK + +D +
Sbjct: 709 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 768
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++++ G PD+ TY +L GF +Q I+ +M + DRST+T+++
Sbjct: 769 MENS-------GLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE-RGVNPDRSTYTSLI 820
Query: 137 DALLYSGSIK 146
+ + ++K
Sbjct: 821 NGHVTQNNLK 830
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK-LDVTMPF 73
+ + N +I A ++EA+++++S+ KGL+P +YN +I+ KT K L
Sbjct: 392 DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 451
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E LK G PD TY LL+ ++ I EM S ++ D +F+
Sbjct: 452 DEMLKI--------GMSPDTATYNILLVECCRNDNMMDAERIFDEMPS-QGVVPDLVSFS 502
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
A++ L +G + AL F R N GL P +Y ++
Sbjct: 503 ALIGLLSKNGCLD----QALKYF-----RDMKNAGLAPDNVIYTILI 540
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
I++E V R ++N +N +I A + Q+I+ L +E KG+ PD ++YN LI+
Sbjct: 345 IYQE---VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 401
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
A + L+ + + S G P +FTY ++ G
Sbjct: 402 AYCRQGLLEEAFELMDSM-------SGKGLKPCVFTYNAIINGL 438
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 33 IDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+D A++I E V G++ + + NI+I+A K +K++ T F L D +K G P
Sbjct: 339 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSF---LSDMEEK----GVFP 391
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRSTFT--AMVDALLYSG 143
D+ TY TL+ +A Q LLE FE M S L FT A+++ L +G
Sbjct: 392 DVVTYNTLI----NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 442
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + N ++ + + + EA ++ E E+G+ PD ++ LI+ K ++ +
Sbjct: 566 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + K PD+ TY TL+ GF +++ + E+ +M S
Sbjct: 626 FEMMIQRNLK-------PDVVTYNTLIDGFCKGSEMEKVNELWNDMIS 666
>gi|115529197|dbj|BAF34331.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 728
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+ V L + N++I A +A D+A +++E + E+ L PDS++Y+ +I AC +
Sbjct: 160 DTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRV 219
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
KL + + ++K K +S F+ TL+ + AKD++ ++ ++ EMK
Sbjct: 220 GKLKEALSWFAEMKRLEIKPASSNFN-------TLISPYGKAKDVEGIVRVITEMKK-YG 271
Query: 125 LILDRSTFTAMVDALLYSGSIKVV 148
D T A V A +G IK V
Sbjct: 272 CKPDWQTLDAAVRAYDRAGLIKDV 295
>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
Length = 649
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ N + +I + + +D A ++LE +EK G EPD+++YNI+I++ + ++D
Sbjct: 320 RKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVD 379
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
D + +S PD + +L GF A+ E++ +M + C LI
Sbjct: 380 ----------DALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLI- 428
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187
TF ++D L +G + YA +F ++ + C+ P Y S+++ + +
Sbjct: 429 -EMTFNILIDMLCQNGLVN----YATQVFEQMPRYRCT-----PDIVTYSSLLNGFSEQG 478
Query: 188 DYDIVKSPYRRM--WPDS-------TGTISPEVQEEAGHLLMEAALND 226
++ +R M PD G E+AG L+ E D
Sbjct: 479 LVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKD 526
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 21/127 (16%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAV++ A R ++A +++ E V K P+ +++NILI++ + +D + EQ+ +
Sbjct: 500 NAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPN 559
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PDIFTY L+ GF L L+++ ST + DA+
Sbjct: 560 YGST-------PDIFTYNALINGFSEQGRLDDALKLL-------------STMSCKPDAI 599
Query: 140 LYSGSIK 146
Y+ ++K
Sbjct: 600 SYNSTLK 606
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + + +D A ++LE + G PD +YN LI+ F+
Sbjct: 530 NEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALING------------FS 577
Query: 75 EQ--LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
EQ L D + S+ PD +Y + L G A+ Q E+V EM
Sbjct: 578 EQGRLDDALKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEM 624
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEA-YQILESVEKGLEPDSLSYNILISACIKTKK 66
V + ++N+ V N ++ + ++ EA Y E + PD+ ++NILI +
Sbjct: 134 VQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGG 193
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+D E KD S G PD+ TY TL+ G A ++Q E+ E++S +
Sbjct: 194 VDRAF---EVFKD----MESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCS 246
Query: 127 LDRSTFTAMVDALLYSGSIK 146
D T+T+++ SG +K
Sbjct: 247 PDIVTYTSIISGFCKSGKMK 266
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T N +I +D A+++ + +E G PD ++YN LI+ K ++
Sbjct: 177 DTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELF 236
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRST 131
++++ CS PDI TY +++ GF + K+ +L E + N+I T
Sbjct: 237 KEIQSRSD-CS-----PDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVI----T 286
Query: 132 FTAMVDALLYSGSI 145
F ++D G+I
Sbjct: 287 FNVLIDGFGKIGNI 300
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 24/171 (14%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I +A R DEAY IL +E G +PD +++ ++I +L
Sbjct: 238 KPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKA 297
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDR 129
++K + QK PD TY TLL + D QS++E+ M + N++
Sbjct: 298 VFWKMKASDQK-------PDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIV--- 347
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
++TA+VDAL G + AL +F E+ ++ G+ P+ + Y S++
Sbjct: 348 -SYTAVVDALCQVGRVD----EALAVFDEMKEK-----GMSPEQYSYNSLI 388
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E + R + N I N V++ + ++ A +L S+ EKG PD SYN ++ IK
Sbjct: 580 EEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKE 639
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE--MKSC 122
++L+ Q+K PD T T+L F ++ L V E +K+
Sbjct: 640 ERLEEAFRMFCQMKKI--------LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAG 691
Query: 123 CNLILDRSTFTAMVDALLYSGSIK 146
CN +D+S+F ++++ +L ++
Sbjct: 692 CN--VDKSSFHSLMEGILKKAGVE 713
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N ++ R A + Q+ E VE+G+ PD SY ILI +L+ + +
Sbjct: 905 NCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYF 964
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
QL + G PD+ Y L+ G ++ ++ + + EMK
Sbjct: 965 RQLHEL-------GLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMK 1003
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + AV++A + R+DEA + + + EKG+ P+ SYN LIS +K D +
Sbjct: 345 NIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRAL--- 401
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV-FEMKSCCNLILDRSTFT 133
+L ++ C G P+ +T+ L + + + K QSL I +E ++ D +
Sbjct: 402 -ELFNHMNAC---GPSPNGYTH-VLFINY-YGKSGQSLKAIQRYEHMKSKGIVPDVAAAN 455
Query: 134 AMVDALLYSGSI 145
A++ +L SG +
Sbjct: 456 AVLYSLAGSGRL 467
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A ++ R++E ++ + + KG E ++YN +IS +K+K+L EQ D
Sbjct: 805 NLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRL-------EQAID 857
Query: 80 NGQKCSSGGFHPDIFTYATLLMGF 103
S GF P TY LL G
Sbjct: 858 LYYNLMSEGFSPTPCTYGPLLDGL 881
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 41/176 (23%)
Query: 7 IVNREHWKLNTIV-----MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
I EH K IV NAV+ + + R+ A ++ ++ G+ PD+++Y ++I
Sbjct: 436 IQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKC 495
Query: 61 CIKTKKLDVTMPFNEQLKDNG------------QKCSSGG--------FH--------PD 92
C K K D M F + ++G GG FH P
Sbjct: 496 CSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPT 555
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRSTFTAMVDALLYSGSI 145
TY TLL G ++ +++++ EM NLI T+ ++D L +G +
Sbjct: 556 NGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLI----TYNTVLDCLSKNGEV 607
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L T N++I + ID A + +++ G PD +YN+++ A K+ +++ +
Sbjct: 764 LKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKV 823
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+++ G+ TY T++ G +K L+ +++ + + S T+
Sbjct: 824 QKEMHRK-------GYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMS-EGFSPTPCTYG 875
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
++D LL SG + + A +F E+++ C
Sbjct: 876 PLLDGLLKSGKM----VDAENLFNEMLEYGC 902
>gi|358345906|ref|XP_003637015.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358347053|ref|XP_003637577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502950|gb|AES84153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503512|gb|AES84715.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 823
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L T+ N +I RI E +L+ +E+ PD+ +YNILIS +K +++ +
Sbjct: 305 LTTVTFNTMIHLYGNHGRIREVSSLLKRMEELRCLPDTRTYNILISVLVKHNNINLATKY 364
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++K+ PD+ +Y TLL + K +Q EIV EM
Sbjct: 365 FAKMKE-------AFLEPDVVSYRTLLYAYSTRKMVQEAEEIVQEM 403
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + + +A ++++++ ++G PD +S+N LI+A +K+ L + +L
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV--EL 284
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
D + G PD TY TLL +L ++ VFE D D
Sbjct: 285 LD---MVRNSGLRPDAITYNTLLSACSRDSNLDGAVK-VFE---------DMEAHRCQPD 331
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYR 197
Y+ I V G L E + G +P Y S+++ A + + VK Y+
Sbjct: 332 LWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQ 391
Query: 198 RMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+M G E + ++ GQ+DLAL
Sbjct: 392 QMQKMGFGK-----DEMTYNTIIHMYGKQGQLDLAL 422
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I EA ++ +E KG PD+++YN L+ A + + E++K+
Sbjct: 336 NAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERN-------TEKVKE 388
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
Q+ GF D TY T++ + L L++ +MK D T+T ++D+L
Sbjct: 389 VYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSL 448
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVT 70
++K+ + N++++ + + Q+ + + E GLEPD +YN LI + ++ +
Sbjct: 922 NFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEG 981
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+Q+++ G P + TY +L+ F K L+ E +FE L LDRS
Sbjct: 982 YLLMQQMRNL-------GLDPKLDTYKSLISAFGKQKCLEQ-AEQLFEELLSKGLKLDRS 1033
Query: 131 TFTAMVDALLYSGS 144
+ M+ SGS
Sbjct: 1034 FYHTMMKISRDSGS 1047
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK---GLEPDSLSYNILISACIKTKKLDVTMP 72
+ + N +++ A +I A+ ++ + K L PD ++Y LI + +++D +
Sbjct: 260 DVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALD 319
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E++ NG+ G P+I TY TL+ G A+ + EI+ +MK I D TF
Sbjct: 320 ILEEM--NGR-----GLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTF 372
Query: 133 TAMVDALLYSGSI 145
++++ +G++
Sbjct: 373 NTLINSHCCAGNL 385
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +I Q +DEA ILE + +GL+P+ ++YN LI + +K D
Sbjct: 297 DVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEIL 356
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ+K +G G PD T+ TL+ A +L ++ MK + D ++++
Sbjct: 357 EQMKGDG------GSIPDACTFNTLINSHCCAGNLDEAFKVFENMKK-LEVSADSASYSV 409
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173
++ L G + +F E+ ++ PKP
Sbjct: 410 LIRTLCQKGDYGKAEM----LFDELFEKEILLSSYGPKP 444
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 20/193 (10%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ N+V+ + R + A ++ + + K G++PD+ +YNILI K +D F +
Sbjct: 191 VTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFK 250
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTA 134
++ +S PD+ TY TL+ G A ++ +V M K C +L D T+T
Sbjct: 251 EM-------TSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTT 303
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ + AL I E+ R GL P Y +++ L +D +K
Sbjct: 304 LIRGYCRKQEVD----EALDILEEMNGR-----GLKPNIVTYNTLIKGLCEAQKWDKMKE 354
Query: 195 PYRRMWPDSTGTI 207
+M D G+I
Sbjct: 355 ILEQMKGDG-GSI 366
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
KL N++I + EA E+ ++ E+++ G+ P +++N ++ +K + ++
Sbjct: 152 KLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKE 211
Query: 73 -FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-CNLILDRS 130
++E LK G K PD +TY L+ GF + EM S C+ D
Sbjct: 212 VYDEMLKTYGVK-------PDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDP--DVV 262
Query: 131 TFTAMVDALLYSGSIKV 147
T+ +VD L +G IKV
Sbjct: 263 TYNTLVDGLCRAGKIKV 279
>gi|224131366|ref|XP_002328521.1| predicted protein [Populus trichocarpa]
gi|222838236|gb|EEE76601.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
E + E + N NAV+ ++DEA ++L+ V KG P SYNIL + K
Sbjct: 30 ETMTEEGAEPNVYTYNAVMGGYCLNNQMDEAQKVLDIMVGKGYAPAVHSYNILTNGNCKR 89
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++LD + K K S PD TY+TL+ GF Q L + EM S
Sbjct: 90 RRLD-------EAKRLLSKMSEKELTPDTVTYSTLMQGFCQVGRPQEALNLFNEMCS 139
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 32 RIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+++EA ++ + +E KG +PD ++YN +I + K + ++ M F ++ D G
Sbjct: 353 QLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDR-------GIP 405
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
P+ TY+T+L GF + L ++ EM N++ + TF+ +VD L G +
Sbjct: 406 PNAVTYSTILHGFCNLGQLDEATQLFKEMVG-RNVMPNTLTFSILVDGLCQEGMV 459
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
NT+ + +++ + + EA + E++ EKG+EP+ +YN L++ C++ K + F
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF 501
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ G+ C+ PD+ +Y L+ G+ +++ + ++ +M S L + T+
Sbjct: 502 EIMV---GKGCA-----PDLHSYNILINGYCNSRRMDKAKALLTQM-SVKKLTPNTVTYN 552
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
++ L Y G L E+ K++CS+ G+ P Y +++ L D
Sbjct: 553 TIMKGLCYVGR--------LLDAQELFKKMCSS-GMLPTLMTYSILLNGLCKHGHLDEAL 603
Query: 194 SPYRRM 199
++ M
Sbjct: 604 KLFKSM 609
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 22/187 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N+++ +++EA ++ + +E+ G +PD ++YNI+I + K + ++ F
Sbjct: 267 DAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFL 326
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSCCNLILDRSTF 132
++ D G PD+ TY T+L G + L + + E K C D +
Sbjct: 327 SEMVDQ-------GIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGC---KPDVVAY 376
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++D+L + A+ E+V R G+ P Y +++H D
Sbjct: 377 NTIIDSLCKDRLVND----AMEFLSEMVDR-----GIPPNAVTYSTILHGFCNLGQLDEA 427
Query: 193 KSPYRRM 199
++ M
Sbjct: 428 TQLFKEM 434
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N +I++ + + +++A L E V +G+ PD+++YN ++ +L+
Sbjct: 230 KPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATR 289
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++++ NG K PD+ TY ++ + + + + EM + D T+
Sbjct: 290 LFKRMEQNGCK-------PDVVTYNIIIDSLYKDRLVNDAADFLSEMVD-QGIPPDVVTY 341
Query: 133 TAMVDALLYSGSI 145
T ++ L Y G +
Sbjct: 342 TTILHGLCYLGQL 354
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + ++E + E + G PD ++YN LI+ K +K+ +
Sbjct: 323 DVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYF 382
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++K+NG K P++ TY+TL+ F +Q +++ +M+ L+ + T+T+
Sbjct: 383 SEMKNNGLK-------PNVVTYSTLIDAFCKEGMMQGAIKLFVDMRR-TGLLPNEFTYTS 434
Query: 135 MVDALLYSGSI 145
++DA +G++
Sbjct: 435 LIDANCKAGNL 445
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
KLN + A+++ +A R+ EA ++ S+ K G+ P+ Y L+ IK ++++ M
Sbjct: 461 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 520
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+Q+ + K PD+ Y +++ G + L+ I+ EMKS
Sbjct: 521 ILKQMTECNIK-------PDLILYGSIIWGHCSQRKLEETKLILEEMKS 562
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I+A +A + +A + ++ G+E ++Y +LI K +++ +
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAV--- 624
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
D + S G P++ Y +L+ G ++S ++ EM+ C + D + FTA
Sbjct: 625 ----DYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQ-CRGMTPDITAFTA 679
Query: 135 MVDALLYSGSIK 146
++D L G+++
Sbjct: 680 LIDGNLKHGNLQ 691
>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1006; Flags: Precursor
gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 723
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTIV N +++A ++ I+E + E +KGL+P + +YNIL+ A + + D+
Sbjct: 378 NTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLL 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++D G P++ +Y L+ + K + + F L ++TA
Sbjct: 438 REMEDL-------GLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTA 490
Query: 135 MVDALLYSG 143
++ A SG
Sbjct: 491 LIHAYSVSG 499
>gi|255661020|gb|ACU25679.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 376
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
L+ +V N ++ RI + +++ E + K + S+NI++ K+D +
Sbjct: 23 LDAVVYNTMLNGFFRVGRIKDCFELWELMGKEGSRNVASFNIMMRGLFNNGKVDEVILIW 82
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI--VFEMKSCCNLILDRSTF 132
E +K + GF D TY L+ GF D+ L + + EMK +LD +
Sbjct: 83 ELMKKS-------GFVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMKGG---VLDAFAY 132
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
+AM++ L + A+ + ++K C P H+Y ++++ L ++
Sbjct: 133 SAMINGLCKDSKLD----KAVSVLNGMIKSGCK-----PNAHVYNALINGLVGSSKFEDA 183
Query: 193 KSPYRRM 199
++ M
Sbjct: 184 IRVFQEM 190
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+F+E + H I N +I + +R EAY ++ E +EKG P ++Y++LI
Sbjct: 186 VFQE---MGSTHCSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIK 242
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K+++ + Q+ +S GF PDI + L+ G +Q L + F+M
Sbjct: 243 GLCLCHKVEMALQLWYQV-------TSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDM 295
>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
Length = 374
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 31/124 (25%)
Query: 10 REHWKLNTIVMNAVIEAS-REAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL 67
R + + + N VI RE +++D AY + + +++GL PD ++YN +ISA K + +
Sbjct: 195 RGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAM 254
Query: 68 DVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTYATL 99
D ++ NG CSSG G PD+FTY T
Sbjct: 255 DKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNT- 313
Query: 100 LMGF 103
LMG+
Sbjct: 314 LMGY 317
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 17 TIVMNAVIEASREAQRID--EAYQILESVEKGLEPDSLSYNILISACIK-TKKLDVTMPF 73
TI++ + + +R Q + + + G PD +SYN +I+ ++ ++LD
Sbjct: 166 TILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHL 225
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+Q+ D G PD+ TY +++ A+ + ++ M + +R T
Sbjct: 226 FDQMLDQ-------GLSPDVVTYNSIISALSKARAMDKAAVVLVRMVK-NGAMPNRITHN 277
Query: 134 AMVDALLYSGSIK-VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+++ SG +G++ KR+C + G+ P Y ++M
Sbjct: 278 SLLHGYCSSGKPNDAIGVF---------KRMCRD-GVEPDVFTYNTLM 315
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T MN +++ + + + A + + + PD S+N L+ K + ++
Sbjct: 229 DTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVHGWCKARMMN------- 281
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFT 133
+ +D ++ GF P + TY +L+ + KD Q++ I+ EM+S C ++ T+T
Sbjct: 282 EARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVI---TYT 338
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++ AL +G + AL IF ++ C+ P Y S+++ L
Sbjct: 339 IVMHALGKAGRTQ----EALDIFDKVRGDGCA-----PDASFYNSLIYILG 380
>gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 43/193 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV----- 69
N N +++A + ++++EA++++ +E+ G+ PD+++YN I+ C K V
Sbjct: 181 NIRTFNVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYNT-IATCYVQKGETVRAESE 239
Query: 70 ---TMPFNEQLKDNGQKCS--SGGF---------------------HPDIFTYATLLMGF 103
M E+ K NG+ C GG+ ++ + +L+ GF
Sbjct: 240 VVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGF 299
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
D + E++ MK CN+ D T++ +++A +G ++ A +F E+VK
Sbjct: 300 VEVMDRDGIDEVLTLMKE-CNVKADVITYSTVMNAWSSAGYME----KAAQVFKEMVK-- 352
Query: 164 CSNPGLWPKPHLY 176
G+ P H Y
Sbjct: 353 ---AGVKPDAHAY 362
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISA-CIKTK 65
V + K ++I NAVI A E+ +++A Q +L+ E GL P + +YN LI I K
Sbjct: 100 VEQSGTKPDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 159
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + L++ S+ P+I T+ L+ + K ++ E+V +M+ C
Sbjct: 160 PERSSALLDLMLEE-----SNVDVRPNIRTFNVLVQAWCKKKKVEEAWEVVHKMEEC 211
>gi|224137548|ref|XP_002322585.1| predicted protein [Populus trichocarpa]
gi|222867215|gb|EEF04346.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I S +A RIDEA Q+ + + +GL P++ SYN LIS + ++ +
Sbjct: 9 NVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRI---LEAK 65
Query: 75 EQLKD-NGQKCSSGGFHPDIFTYATLLMGF 103
E KD + Q CS PD+ TY+ LL G
Sbjct: 66 ELFKDMHAQGCS-----PDLVTYSILLDGL 90
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILI-SACIKTKKLDVT 70
K++ IV + +++ A+R D+ +L E G+EPD++SYN ++ + C ++
Sbjct: 151 KMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRAL 210
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+ +K SGG P++ TY T++ G ++ + EM ++ D
Sbjct: 211 DLLHTMVK------KSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQ-QGVVPDVV 263
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
T+T+++DAL + ++ L +++++ SN G P Y M+H + +
Sbjct: 264 TYTSIIDALCKARAMDKAEL--------VLRQMISN-GFQPNKVTYNCMIHGYSISGQWK 314
Query: 191 IVKSPYRRM 199
+R M
Sbjct: 315 ETAGMFREM 323
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+ I N++I+ +I++A+ +L++ + G+EPD +SYN LI + ++D + F
Sbjct: 542 DVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILF 601
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
E L S G P TY +L G
Sbjct: 602 GEML--------SKGVKPTTITYGIILHGL 623
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQ 76
V N VI+A + +DE I + E+G+ PD+ +Y I+I+A + +L D FN+
Sbjct: 404 VFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQM 463
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + G P+ Y +L+ GF +L E+V EM S
Sbjct: 464 I--------AMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMS 500
>gi|356536609|ref|XP_003536829.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Glycine max]
Length = 787
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ LNT+ +N +I R+ +A + + + E PD+ +YNILIS IK K+
Sbjct: 274 RQGRALNTVTLNTMIHLYGNCGRLRQACLLFQKMGEFRCVPDTWTYNILISLNIKNNKVK 333
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+ + ++K PD+ +Y TLL + K ++ E++ EM +L +D
Sbjct: 334 LAAKYFARMK-------KAFLEPDVVSYRTLLYAYSTRKMVREAEELIREMDE-RDLEID 385
Query: 129 RSTFTAMVDALLYSGSIK 146
T +A+ + SG ++
Sbjct: 386 EFTQSALTRMYVESGMLE 403
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ +A+RID+A +++E V++GL+P++++YN +++ K +
Sbjct: 511 SAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI------- 563
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ D + ++ GF D+ TY TL+ G A Q L+++ M+
Sbjct: 564 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 609
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 83/166 (50%), Gaps = 16/166 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQI----LESVEKGLEPDSLSYNILISACIK 63
+ RE ++ +V+ + +E+ +R D+A + L++ G++ D++ +N L++ ++
Sbjct: 115 MRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVE 174
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
KL + L+ + + G PD+ T TL+ A +++ + ++ EM S
Sbjct: 175 GSKLKL-------LESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSS-H 226
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169
+ D +TFT ++ + GSI+ AL + ++++ CS G+
Sbjct: 227 GVAPDETTFTTLMQGFIEEGSIEA----ALRVKAKMMEAGCSPTGV 268
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
N++V+R +T N +I A R++EA + E KGL PD ++NILI+A K
Sbjct: 361 NQMVDRGCLP-DTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCK 419
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-- 121
+ + E++K +G C+ PD TY L+ L + L+++ EM+S
Sbjct: 420 VGDPHLGIRLFEEMKSSG--CT-----PDEVTYNILIDHLCSMGKLGNALDLLNEMESNG 472
Query: 122 CCNLILDRSTFTAMVDAL 139
C + T+ ++DAL
Sbjct: 473 CPRSTV---TYNTIIDAL 487
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + N + + + A ++++ +++G +PD +YN +I+ K +LD
Sbjct: 298 FEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 357
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
Q+ D G C PD T+ TL++ L+ L++ E+ + L D T
Sbjct: 358 GIVNQMVDRG--CL-----PDTTTFNTLIVALSSQNRLEEALDLAREL-TVKGLSPDVYT 409
Query: 132 FTAMVDALLYSG 143
F +++AL G
Sbjct: 410 FNILINALCKVG 421
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 18 IVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ +N +I + R+++A I + + G EPD ++YN + + + + +
Sbjct: 268 VTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDL 327
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
+ G PD+FTY T++ +L IV +M + C + D +TF
Sbjct: 328 MLQEGHD-------PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC---LPDTTTFNT 377
Query: 135 MVDAL 139
++ AL
Sbjct: 378 LIVAL 382
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + N +++ +A R+ EA Q+LE ++ G PD ++Y+ + K+ K+
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQ 243
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
EQ++D+ P++ TY T+L G + + + LE++ +M S L+ +
Sbjct: 244 VLEQMRDSDH-------DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296
Query: 133 TAMVDALLYSGSIK 146
+ +VD L G +
Sbjct: 297 STVVDGLCKLGRTQ 310
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66
++R N++ NA++ + R + ++LE++ +G++P+ +SYN L+ K ++
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ G G PD+ TY+TLL G+ A ++ E++ E+ S
Sbjct: 61 WHEAEELVRDMISRG-----GRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVIS 110
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+ G P +++N LIS C + K L++ + + ++ G D+ TY TL+ G
Sbjct: 144 IRAGCCPTLITFNTLISGCCREKNLEMADSLLQTM-------AASGVKADVVTYNTLMDG 196
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
A LQ +++ MK+ D +++ V L SG +
Sbjct: 197 LCKAGRLQEAEQLLERMKA-SGCAPDVVAYSSFVYGLCKSGKV 238
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
V R+ N + ++ AQ+ DEA +E+ G+ + ++N L+ A K+K
Sbjct: 129 VMRKEGVANVETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKN 188
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNL 125
+ +++ + F PD TY+ LL G+ A +L + E+ +M + C
Sbjct: 189 VRKAQEIFDKMNNR--------FSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQ- 239
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
D T+ MVDAL +G ++ A+C+ ++ R C P +Y ++H
Sbjct: 240 -PDIVTYGIMVDALCKTGRVE----EAVCVVQDMSSRGCQ-----PTTFIYSVLVH 285
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ +V NA++ A + ++ D A+++++ +E G+ P+S ++NI+++ I K D F
Sbjct: 311 DVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVF 370
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+K +C PD TY ++ F ++ L+ V++ + TF+
Sbjct: 371 RNMIK----RCK-----PDSDTYTMMIKMFCENDKIEMALK-VWKYMRLKQFLPSMHTFS 420
Query: 134 AMVDALLYSGSI 145
+++ L G +
Sbjct: 421 VLINGLCDKGEV 432
>gi|449445200|ref|XP_004140361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
mitochondrial-like [Cucumis sativus]
Length = 517
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 33/175 (18%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+FEE ++ ++ N+ + I +++EA+ +++ +E GL+P ++N+LI
Sbjct: 299 VFEE---MSERGFQANSFIYTLFIGVHCRGGKVEEAHCLMQEMENMGLKPYPETFNLLIE 355
Query: 60 ACIKTKKLDVTMPFNEQLKDNG-------------QKCSSG---------------GFHP 91
C + + + E++ + G + C G GF P
Sbjct: 356 GCAISGHSEEILSMCEKMLERGFLPSCSVFNVAIDKICEKGDVKKANALLTILLDKGFLP 415
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
D TY L++G+R + ++Q +L++ +EM + L S F A++ +L SG ++
Sbjct: 416 DETTYTNLIIGYRKSGEIQEILKLYYEMGARL-LSPGVSVFFALIGSLCQSGRLE 469
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN + N +I A + EA ++L + V +G +PD+++ NI+I A K K+++ +
Sbjct: 523 ELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI- 581
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
QL D + S+G +HPDI Y +L+ G
Sbjct: 582 ---QLMD---RLSAGKWHPDIIAYTSLISG 605
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 27/168 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +++A + R+D A+++L E KG +PD +SY LIS+ K K+
Sbjct: 180 NVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL- 238
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS--TF 132
+ F P + Y L+ G + +++ EM N +D + ++
Sbjct: 239 -----------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMM---NKGIDPNVISY 284
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
T +++AL +G++++ +L + ++ R CS P H + S++
Sbjct: 285 TTIINALSDAGNVEL----SLAVLAKMFARGCS-----PNLHTFTSLI 323
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
+ +++N + ++ + A ++L +E + PD + YN +I K K ++
Sbjct: 231 QGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNE 290
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
F ++ +S G PD+ TY+TL+ GF A L ++ EM + N+ D
Sbjct: 291 AYDFYTEM-------NSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEM-TLKNINPDV 342
Query: 130 STFTAMVDALLYSGSIK 146
T+T ++DAL G +K
Sbjct: 343 YTYTILIDALCKEGKLK 359
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + + +DEA +L E + K + P++++YN LI K+ ++ + ++L
Sbjct: 416 NIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHH 475
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GQ D+ TY +LL G ++L + + +MK + ++ T+TA++D L
Sbjct: 476 RGQP-------ADVITYTSLLDGLCKNQNLDKAIALFMKMKE-RGIQPNKYTYTALIDGL 527
Query: 140 LYSGSIK 146
+K
Sbjct: 528 CKGARLK 534
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
V NA+I + + ++DEA + ++ KGL P+ ++Y+ILI + K KLDV + F +
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415
Query: 77 LKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHAKD 108
+ + G K C G G P++ Y +L+ G+ +
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
L + + EM + + TFTA++ L ++ + A +FGE+V+
Sbjct: 476 LHNAFRLYHEMTG-KGISPNTYTFTALISGLCHANRMA----EANKLFGEMVE 523
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +IE + A+++L E VEKGL PD+ +Y LIS T ++ F
Sbjct: 529 NEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588
Query: 75 EQLKDNGQKCSS-GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
L+ QK + G P++ TY L+ G + + EM + N + +++T+
Sbjct: 589 NDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLA-SNSLPNQNTYA 647
Query: 134 AMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSN 166
+D L G+I K + L+ + + G + V N
Sbjct: 648 CFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYN 681
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT A+I A R+ EA ++ E VE + P+ ++YN+LI K+ + F
Sbjct: 494 NTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEG--HCKEGNTVRAF- 550
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF----------RHAKDLQSLLEIVFEMKSCCN 124
E L + +K G PD +TY L+ G DLQ + + E++ C
Sbjct: 551 ELLDEMVEK----GLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGC-- 604
Query: 125 LILDRSTFTAMVDALLYSG 143
+ + T+TA+++ L G
Sbjct: 605 -LPNVVTYTALINGLCKIG 622
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDV 69
E + NT+ N +I + RI EA ++L + ++ G+ PD +SY+ +I + L
Sbjct: 671 EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKE 730
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ E + + G +PD Y L+ G +L E+ +M + +R
Sbjct: 731 AIKLWESMLNR-------GVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR-RGVKPNR 782
Query: 130 STFTAMVDALLYSGSIKVVGLYALC 154
+T+ +++ S+ Y C
Sbjct: 783 ATYNSLIHGTCLMSSVSSTADYFSC 807
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I + I++A + E V +GL+ ++++YN LI + +K
Sbjct: 291 NVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKF------- 343
Query: 75 EQLKDNGQKCSS-GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++KD + + G F PD T+ TL+ HA +L L+ VFE S + D +T++
Sbjct: 344 EKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALK-VFERMSELKIQPDSATYS 402
Query: 134 AMVDALLYSG 143
A+V +L G
Sbjct: 403 ALVRSLCQGG 412
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T N +I +D+ ++I + + G EPD ++YN L+ + K VT+ +N
Sbjct: 219 DTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGK--VTVAYN 276
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+K G+K S +P++ TY TL+ G+ ++++ L + EM
Sbjct: 277 -VVKGMGKK--SVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEM 318
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 46 GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
G+ PD+ ++NILI C+ D FN+ S G PD+ TY TL+ G
Sbjct: 215 GVTPDTFTFNILIRGFCMNGMVDDGFRIFND--------LSRFGCEPDVVTYNTLVDGLC 266
Query: 105 HAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
A + +V M K +L + T+T ++ I+ AL +F E+V
Sbjct: 267 RAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIE----KALAVFEEMV--- 319
Query: 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAA 223
N GL Y +++ L ++ +K D GT SP+ + LM
Sbjct: 320 --NQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGD--GTFSPDTC--TFNTLMHCH 373
Query: 224 LNDGQVDLAL 233
+ G +D AL
Sbjct: 374 CHAGNLDDAL 383
>gi|302795027|ref|XP_002979277.1| hypothetical protein SELMODRAFT_51561 [Selaginella moellendorffii]
gi|300153045|gb|EFJ19685.1| hypothetical protein SELMODRAFT_51561 [Selaginella moellendorffii]
Length = 570
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 21/207 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKT 64
E R + NA+I+ A R+DEA + + E + ++++Y ILI K+
Sbjct: 135 ERTKRNSTMVTLAAANALIDGLCRAGRVDEALELVFEGCKDKAMINAVTYGILIQGLCKS 194
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+++ + E++ +S G +PD TY +++ GF ++ LE+ +
Sbjct: 195 KRVEDGLRLLEEMS------TSRGLNPDAATYNSIVAGFCELDMVEQALELFSNVTQGNK 248
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
D +V+ L SG L AL + E+ RV G P +Y M+ EL
Sbjct: 249 CAPDPVMIGTLVNGLCKSGR----SLQALELLEEM-DRV----GCQPSSQVYCLMIEELC 299
Query: 185 ARVDYD----IVKSPYRR-MWPDSTGT 206
+ D ++ R+ P +TGT
Sbjct: 300 NSGEADKACKLLHETLRKGRAPANTGT 326
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N+ V N +I+ + EA +++ ++K G++PD +Y ISAC K ++
Sbjct: 729 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 788
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G K P+I TY TL+ G+ A + L EMK+ L D++ +
Sbjct: 789 EEMEALGVK-------PNIKTYTTLIKGWARASLPEKALSCYEEMKA-VGLKPDKAVYHC 840
Query: 135 MVDALLYSGSIKVVGLYA 152
++ +LL SI +Y+
Sbjct: 841 LLTSLLSRASIAEAYIYS 858
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 36 AYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E V++G++PD + YN +I+A +D + ++++ + P
Sbjct: 539 AFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHR-------PTTR 591
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
T+ ++ GF + D++ LE VF+M C + TF A+++ L+
Sbjct: 592 TFMPIINGFAKSGDMRRSLE-VFDMMRRCGCVPTVHTFNALINGLV 636
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N VI + +D+AY + E + +G P+ ++YN +I K + +D
Sbjct: 138 NVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVL 197
Query: 75 EQLKDNGQ---------KCSSGGFHPDIFTYATLL 100
+Q+ D GQ K S GG PD+ TY+ L+
Sbjct: 198 QQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLI 232
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E++NR N I +N ++++ + R+ EA+ + + G++PD +SY ILI
Sbjct: 390 EMINR-GIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLD 448
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+D E +K G+ S G PD TY+ LL G+ + L + EM S +
Sbjct: 449 GKMD------ESIKLLGRMVSI-GLRPDNVTYSALLNGYCKNGRVDDALALYREMFS-KD 500
Query: 125 LILDRSTFTAMVDALLYSGSI 145
+ + T+ ++ L ++G +
Sbjct: 501 VKPNAITYNIILHGLFHAGRV 521
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 24/105 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-----------------EKGLEPDSLSYNILI 58
N + N+VI+ +AQ +D+A +L+ + GL+PD ++Y++LI
Sbjct: 173 NIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLI 232
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
K + + + GQ +PD +TY TLL G+
Sbjct: 233 DYYCKIGRCTEARNIFDSMVRRGQ-------NPDAYTYRTLLHGY 270
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 19 VMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N +I A + + +D+A +E +KG P+ ++Y +I K +++ + Q+
Sbjct: 297 VFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQM 356
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G PDI T+ +L+ G + + + ++ FEM
Sbjct: 357 -------VSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEM 391
>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 623
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N ++ + RID+ +Q+ + + + G+ P+S ++NIL + +D F
Sbjct: 213 SVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFL 272
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAK--DLQSLLEIVFEMKSCCNLILDRST 131
E++++ GF PDI TY TL+ + R + D L I++ N++ D +
Sbjct: 273 ERMEEE-------GFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRR----NVLPDLVS 321
Query: 132 FTAMVDALLYSGSIK 146
+TA+++ L G ++
Sbjct: 322 YTALMNGLCKEGKVR 336
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T +MN + + + + EA+Q+ + +GL PD +S+N LI K K+ +
Sbjct: 323 TALMNGLCKEGK----VREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLH 378
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ G PD T L+ G+R + S L +V E++
Sbjct: 379 EM-------IGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELE 416
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 33/245 (13%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
IFE+ + + L ++ +IE + ++++A+ + S+ KG++P+ ++Y ++IS
Sbjct: 450 IFED---LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 506
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L +++++G P+ TY TL+ DL + +++ EM
Sbjct: 507 GLCKKGSLSEANILLRKMEEDGNA-------PNDCTYNTLIRAHLRDGDLTASAKLIEEM 559
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
KS C D S+ ++D LL + + R C + G + L
Sbjct: 560 KS-CGFSADASSIKMVIDMLLSA-------------MKRLTLRYCLSKGSKSRQDLL--- 602
Query: 180 MHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239
EL+ + + +M+P +T T S V + A LN DL + S+
Sbjct: 603 --ELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSAELNR---DLRKLRRSSV 657
Query: 240 ITRWK 244
+ ++K
Sbjct: 658 LKKFK 662
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
AY +L V K G EPD+ ++N LI K+ + +++ +N G PD+
Sbjct: 132 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-------GCQPDVV 184
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY +++ G + D L+++ +M+ N+ D T++ ++D+L G I A+
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEE-RNVKADVFTYSTIIDSLCRDGCIDA----AIS 239
Query: 155 IFGEI 159
+F E+
Sbjct: 240 LFKEM 244
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
+++ R + + ++I+ +R+D+ ++ ++ K GL ++++Y+IL+ ++
Sbjct: 347 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 406
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+ + E+L Q+ S G PD+ TY LL G L+ LEI FE
Sbjct: 407 GKIKLA----EEL---FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEI-FEDLQKSK 458
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHE 182
+ L +T +++ + G ++ A +F CS P G+ P Y M+
Sbjct: 459 MDLGIVMYTTIIEGMCKGGKVE----DAWNLF-------CSLPCKGVKPNVMTYTVMISG 507
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV 229
L + R+M D + + L+ A L DG +
Sbjct: 508 LCKKGSLSEANILLRKMEEDGNAP-----NDCTYNTLIRAHLRDGDL 549
>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
Length = 601
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILIS 59
+FEE ++R + + I+ I+ + RI +A ++ + V++GLEP+ ++YN+LI+
Sbjct: 207 VFEE---MSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLIN 263
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K + + ++ D G PD+ TY TL+ G ++ + ++ EM
Sbjct: 264 CLCKEGSVREALALRNEMDDK-------GVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEM 316
Query: 120 KSCCNLI-LDRSTFTAMVDALLYSGSIK 146
L+ D TF +++ L G ++
Sbjct: 317 IQGDTLVEPDVVTFNSVIHGLCKIGRMR 344
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + V+ ++R DEA +L S++ G+ D ++Y LI +LD
Sbjct: 114 NAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELD------ 167
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
L+ G+ C SG HP++ Y+ LL G+ + Q + + VFE S + D FT
Sbjct: 168 GALELLGEMCGSG-VHPNVIVYSCLLRGYCRSGRWQDVSK-VFEEMSRLGVEPDVIMFTG 225
Query: 135 MVDALLYSGSI 145
+D L G I
Sbjct: 226 FIDDLCKKGRI 236
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + + ++ + ++ I A Q+L+ +++GL PD+++Y+ILI+ K L
Sbjct: 464 LDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDL------ 517
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E+ + ++ ++ GF PD+ + +L+ G+ + +L+++ EM++
Sbjct: 518 -EEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRA 564
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
E++ N + N +I +++ A ++ E + GLEPDS +Y+ILI+ K
Sbjct: 350 REMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSK 409
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
++D F L+ Q+ G ++F Y LL ++ + + EM C
Sbjct: 410 LWEVDRAEMF---LRTMTQR----GIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNC 462
Query: 124 NLILDRSTFTAMVDALLYSGSIK 146
LD ++ M+ SG IK
Sbjct: 463 G--LDAVAYSTMMYGACKSGDIK 483
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N+VI + R+ +A + E + E+G + ++YN LI ++ K+++ M
Sbjct: 326 DVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLM 385
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+L S G PD FTY+ L+ GF
Sbjct: 386 SEL-------ISSGLEPDSFTYSILINGF 407
>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 706
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAV++ A+R ++A +++ E V K PD +++N +IS +D + +Q+
Sbjct: 296 NAVLKGLCRAERWEDAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPK 355
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G+K PD FTY+ L+ F ++ LE++ M N + + +++ L
Sbjct: 356 YGRK-------PDNFTYSALINAFSEQGCVEDALELLRSMPCSPNTV----CYKSVLKGL 404
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCS 165
G + VG + GE+V+ C+
Sbjct: 405 CRDGQWEDVGQ----LIGEMVRNDCA 426
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 2 FEENEIVNREHWKLN-TIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILI 58
F ++ + W++N T++ + +++ +A+R+DEA IL E G PD SY+IL+
Sbjct: 112 FAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILL 171
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K+ + + + D+G G P++ TY T++ G A ++V
Sbjct: 172 KGFCNEKRAEEALELLSMMADDGD----GSHTPNVVTYTTVIDGLCKA-------QMVDR 220
Query: 119 MKSCCNLILDRS------TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV--CSNPGLW 170
K ++D+ T+T ++ L G K E+V+ + S GL
Sbjct: 221 AKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWK-----------EVVQMLQEMSTHGLQ 269
Query: 171 PKPHLYVSMMHEL 183
P ++Y ++ L
Sbjct: 270 PDCYIYAVLLDYL 282
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+ I N +++ RIDEA ++L+ V GL+PD ++YN L+ K +++D F
Sbjct: 481 DVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLF 540
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMG------FRHAKDL 109
E L G PD+ TY T+L G F AK+L
Sbjct: 541 REMLMK--------GLTPDVVTYNTILHGLFQTGRFSEAKEL 574
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 35/208 (16%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPFNEQ 76
+ N + A + IDEA I + + ++ L P+ ++Y LI A K ++D + FN+
Sbjct: 344 IFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQM 403
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMG-------------FRHAKDLQSLLEIVFEMKSCC 123
+ + G PDIF +++L+ G F D L+ VF C
Sbjct: 404 IDE--------GMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMC 455
Query: 124 NLILDRSTFTA--MVDALLYSGSIKVVGLY-----ALCIFGEI-----VKRVCSNPGLWP 171
NL + A ++D +L G V Y C+ G I + V + GL P
Sbjct: 456 NLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKP 515
Query: 172 KPHLYVSMMHELAARVDYDIVKSPYRRM 199
Y +++H D S +R M
Sbjct: 516 DKVTYNTLLHGYCKARRIDDAYSLFREM 543
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
+L+T+ N ++ R+ EA ++++ + + G+ PD +SYN L+ T ++D
Sbjct: 444 RLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAK 503
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + S G PD TY TLL G+ A+ + + EM L D T+
Sbjct: 504 LLDVI-------VSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLM-KGLTPDVVTY 555
Query: 133 TAMVDALLYSG 143
++ L +G
Sbjct: 556 NTILHGLFQTG 566
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N+ I ++ D+++ ++S GL PD+L+Y L+ AC + LD+ + +
Sbjct: 77 NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAH 136
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ + GF D++ +L+ + D++S VF SC LD ++T+
Sbjct: 137 GQIIRH-------GFDSDVYVQNSLVTMYSTLGDIKS-ASYVFRRISC----LDVVSWTS 184
Query: 135 MVDALLYSGSI 145
MV + SG +
Sbjct: 185 MVAGYIKSGDV 195
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 29/117 (24%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ ++D A +I +S + K +EPD +SYNILI+ + KK+D M
Sbjct: 317 DVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVC 376
Query: 75 EQLKDNGQKCS----------------------------SGGFHPDIFTYATLLMGF 103
++ G K S S G PD++T+ TLL G+
Sbjct: 377 REISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGY 433
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 1 IFEENEIVNREHW--KL--------NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEP 49
+F EN++ + H KL N ++ V+ + +A+ +L +E+G +P
Sbjct: 152 LFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKP 211
Query: 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109
++ +Y I+I A K LD ++K QK PDIFTY+TL+
Sbjct: 212 NTRTYTIVIDAFCKDGMLDGATSLLNEMK---QK----SIPPDIFTYSTLIDALCKLSQW 264
Query: 110 QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+++ + EM N+ + TF +++D L G ++
Sbjct: 265 ENVRTLFLEMIH-LNIYPNVCTFNSVIDGLCKEGKVE 300
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N+VI+ + ++++A +I+ +EKG++PD ++YN++I ++D
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIF 341
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--------CCNLI 126
+ + + PDI +Y L+ G+ K + +++ E+ CN++
Sbjct: 342 DSMINK-------SIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVL 394
Query: 127 L 127
L
Sbjct: 395 L 395
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I+A + ++ EA ++ E +++ ++PD+++YN+LI+ +LD
Sbjct: 327 NVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD------ 380
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P+I TY TL+ GF K ++ +E+ EM S L+ + T+T
Sbjct: 381 -EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM-SQRGLVGNTVTYTT 438
Query: 135 MVDALLYSG 143
++ +G
Sbjct: 439 IIQGFFQAG 447
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL 67
+ + +LN + N +IE +A ++ EA+ + S+ ++PD ++YN +IS + L
Sbjct: 494 LQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS--IKPDVVTYNTMISGLCSKRLL 551
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
++K++G +SG TY TL+ D + E++ EM+S +
Sbjct: 552 QEADDLFRKMKEDGTLPNSG-------TYNTLIRANLRDCDRAASAELIKEMRS-SGFVG 603
Query: 128 DRSTFTAMVDALLYSGSI 145
D ST + +V +L+ G +
Sbjct: 604 DASTIS-LVTNMLHDGRL 620
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N +I R+DEA Q+ + V K P+ +YN LI+ K K+++ +
Sbjct: 362 DTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELF 421
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ S G + TY T++ GF A D S ++VF+ + D T++
Sbjct: 422 REM-------SQRGLVGNTVTYTTIIQGFFQAGDCDS-AQMVFKQMVSNRVPTDIMTYSI 473
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVK 161
++ L G + AL IF + K
Sbjct: 474 LLHGLCSYGKLDT----ALVIFKYLQK 496
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 39/197 (19%)
Query: 32 RIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
++D+A + + K P + +N L+SA K K ++ + EQ++ G
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K G+ PDI T ++LL G+ H+K + + +V +M
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE- 181
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
D TFT ++ L A+ + ++V+R C P Y ++++
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKAS----EAVALVDQMVQRGCQ-----PDLVTYGTVVNG 232
Query: 183 LAARVDYDIVKSPYRRM 199
L R D D+ + +M
Sbjct: 233 LCKRGDIDLALNLLNKM 249
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +++++ ++RI +A +++ VE G +PD+ ++ LI K +
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD 128
+Q+ G C PD+ TY T++ G D+ L ++ +M++ N+++
Sbjct: 209 ALVDQMVQRG--C-----QPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI- 260
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
F ++D+L ++V A+ +F E+ G+ P Y S+++ L
Sbjct: 261 ---FNTIIDSLCKYRHVEV----AVDLFTEM-----ETKGIRPNVVTYNSLINCL 303
>gi|356572391|ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic-like [Glycine max]
Length = 811
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 37 YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96
YQ ++++ GL+PD SYNIL+ AC ++D+ +LK S G D+FTY
Sbjct: 283 YQNMQNL--GLKPDMTSYNILLKACCVAGRVDLAQDIYRELK---HLESVGQLKLDVFTY 337
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIF 156
+T++ F K Q L+I +M S + L+ ++++++A ++G ++ A+ +F
Sbjct: 338 STIIKVFADVKLWQMALKIKQDMLS-AGVSLNIVAWSSLINACAHAGLVE----QAIQLF 392
Query: 157 GEIVKRVC 164
E++ C
Sbjct: 393 EEMLLAGC 400
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LN + +++I A A +++A Q+ E + G EP++ +NI+++AC++ + D F
Sbjct: 367 LNIVAWSSLINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRF 426
Query: 74 NEQLKDNGQKCSSG-GFHPDIFTYATLLMGFRHAKDLQSL 112
K SSG G++ +I G H D+ S+
Sbjct: 427 FHSWKGKKMLGSSGEGYNSNI--------GQGHMHDVTSI 458
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I + +I+ + ++ A +IL+++ + G++PD ++Y I C+++K +
Sbjct: 512 NQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFMQALTLY 571
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL-----MGFRHAKDLQSLLEIVFEMK 120
E++ KC P+ TY TLL GF H ++Q L I +M+
Sbjct: 572 EEM-----KCYQ--IRPNWVTYNTLLKARSKYGFLH--EVQQCLAIYQDMR 613
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N ++ +A +I EA ++ + V + G P+S +Y+ILI K + L++
Sbjct: 460 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 519
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G +P +F Y TL+ L+ + EM + N D +F
Sbjct: 520 CEMRTH-------GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN-ANCEPDIISFNT 571
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
M+D L +G + V + ++V+ GL P + ++++ L+ + D KS
Sbjct: 572 MIDGTLKAGDFQFVKELQM----KMVEM-----GLRPDALTFSTLINRLSKLGELDEAKS 622
Query: 195 PYRRM 199
RM
Sbjct: 623 ALERM 627
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ + +A ++ ++ VE GL PD+L+++ LI+ K +LD
Sbjct: 565 DIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELD------ 618
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K ++ + GF PD Y +LL G D ++ ++ +M + +LDR +
Sbjct: 619 -EAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAA-KGTVLDRKIVST 676
Query: 135 MVDALLYS 142
++ L +S
Sbjct: 677 ILTCLCHS 684
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I + R+ +A +I + V+KG + ++YN+L+ C+K K+ M
Sbjct: 425 NVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELW 484
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+Q+ D GF P+ FTY+ L+ GF + L + EM++
Sbjct: 485 KQVLDL-------GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRT 524
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 20 MNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
++A+IE +AQ+ + ++ V ++G + NI++ + + M ++
Sbjct: 112 LSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGL---IR 168
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ G+K S PDI +Y TL+ G AK L+ + ++ EM++ + T T ++D
Sbjct: 169 EMGRKSVS----PDIVSYNTLINGLCKAKKLKEAVGLLLEMEA-AGCFPNSVTCTTLMDG 223
Query: 139 LLYSG----------SIKVVGLYA-LCIFGEIVKRVCSNPGLWPKPHLYVSMMHE--LAA 185
L G ++K G A + ++G ++ C+N L L+ M+ + A
Sbjct: 224 LCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISAN 283
Query: 186 RVDYDIVKSPYRRM--WPDSTGT--------ISPEVQEEAGHLLMEAALNDGQVDLALDK 235
V Y + R+ W ++ I P+V G L++ DG+ A+D
Sbjct: 284 VVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTG--LIDGLCKDGRATHAMDL 341
Query: 236 LS 237
L+
Sbjct: 342 LN 343
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+LN + N +I A + EA ++L + V +G +PD+++ NI+I A K K+++ +
Sbjct: 523 ELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI- 581
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
QL D + S+G +HPDI Y +L+ G
Sbjct: 582 ---QLMD---RLSAGKWHPDIIAYTSLISG 605
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 27/168 (16%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +++A + R+D A+++L E KG +PD +SY LIS+ K K+
Sbjct: 180 NVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL- 238
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS--TF 132
+ F P + Y L+ G + +++ EM N +D + ++
Sbjct: 239 -----------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMM---NKGIDPNVISY 284
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
T +++AL +G++++ +L + ++ R CS P H + S++
Sbjct: 285 TTIINALSDAGNVEL----SLAVLAKMFARGCS-----PNLHTFTSLI 323
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 1 IFEENEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNI 56
+FE I + R K + + ++I+ ++ EA+++ ++ V G+EPD ++Y
Sbjct: 507 VFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGT 566
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
L++ C K ++D + +L G K P FTY +L G HA + E+
Sbjct: 567 LVNGCCKNGRIDDGLILFRELLHKGVK-------PTTFTYGIILDGLFHAGRTAAAKEMF 619
Query: 117 FEM 119
EM
Sbjct: 620 QEM 622
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM-PF 73
N V N ++ + + EA I E ++K GL PD L+Y +I A + +D M F
Sbjct: 385 NQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKF 444
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
N + G P+ Y L+ GF DL E+V+E+++
Sbjct: 445 NHMIDK--------GVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRN 484
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +V + V+ + ++ EA + E ++G+ P+ ++YN +I A K + +D
Sbjct: 210 NVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGIL 269
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
Q+ N G PD TY TL+ G+ + + + EM S
Sbjct: 270 RQMVGN-------GVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTS 309
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
V NA+I + + ++DEA + ++ KGL P+ ++Y+ILI + K KLDV + F +
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415
Query: 77 LKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHAKD 108
+ + G K C G G P++ Y +L+ G+ +
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
L + + EM + + TFTA++ L ++ + A +FGE+V+
Sbjct: 476 LHNAFRLYHEMTG-KGISPNTYTFTALISGLCHANRMA----EANKLFGEMVE 523
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 30/161 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +IE + A+++L E VEKGL PD+ +Y LIS T ++ F
Sbjct: 529 NEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
L+ QK C G G D+ Y+ L+ G
Sbjct: 589 NDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
+D +S+++++ +M L D +T M+DA +G++K+
Sbjct: 649 QDRRSIIDLLKQMHD-QGLRPDNVLYTTMIDANAKAGNLKM 688
>gi|255555093|ref|XP_002518584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542429|gb|EEF43971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 31 QRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
R+ EA ++L +E KG+ PD +SYN +I + ++ + +LK+NG+
Sbjct: 245 NRVMEAVELLGEMENKGIRPDVMSYNAVIKGLCNDENVEEVKNWYRKLKENGR------- 297
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
PD TY TL+ R DL +E+ E+ + L+++ + F +VD L+
Sbjct: 298 MPDRVTYMTLIPYLRQKGDLDGAVELCIEIMN-KGLLVNATLFQHVVDELV 347
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 19/182 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILES--VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
NA++ A ++ + D+ L V+ G+ PD +S+NI+I + LD + ++
Sbjct: 128 FNALLSACIDSGKFDKVQGFLRDFPVKLGITPDVVSFNIVIKGYCEIGNLDSGVLVLCEM 187
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
+ G PD+ T+ TLL GF + E ++ + N++ + ++ + +
Sbjct: 188 EKRG-------IEPDLITFNTLLNGF-YGNGRFVDGEKIWTLMESKNVVPNVRSYNSRLR 239
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYR 197
L + + A+ + GE+ N G+ P Y +++ L + + VK+ YR
Sbjct: 240 GLELENRV----MEAVELLGEM-----ENKGIRPDVMSYNAVIKGLCNDENVEEVKNWYR 290
Query: 198 RM 199
++
Sbjct: 291 KL 292
>gi|449530002|ref|XP_004171986.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
mitochondrial-like [Cucumis sativus]
Length = 539
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 33/175 (18%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+FEE ++ ++ N+ + I +++EA+ +++ +E GL+P ++N+LI
Sbjct: 321 VFEE---MSERGFQANSFIYTLFIGVHCRGGKVEEAHCLMQEMENMGLKPYPETFNLLIE 377
Query: 60 ACIKTKKLDVTMPFNEQLKDNG-------------QKCSSG---------------GFHP 91
C + + + E++ + G + C G GF P
Sbjct: 378 GCAISGHSEEILSMCEKMLERGFLPSCSVFNVAIAKICEKGDVKKANALLTILLDKGFLP 437
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
D TY L++G+R + ++Q +L++ +EM + L S F A++ +L SG ++
Sbjct: 438 DETTYTNLIIGYRKSGEIQEILKLYYEMGARL-LSPGVSVFFALIGSLCQSGRLE 491
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 29 EAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+A+R+D+A+ + + ++K G+ PD +Y ILI + K ++ + ++++ S
Sbjct: 464 QAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMR-------SA 516
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSI 145
G P++ TY LL + +K L +I M +C + T++A++D L +G I
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDAC---YPNAITYSALIDGLCKAGEI 573
Query: 146 -KVVGLYA 152
K +YA
Sbjct: 574 QKACEVYA 581
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ ++A+QI+ E + KG PD+ +Y +I+ + K++D +++K G +
Sbjct: 432 KFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKV-------GVN 484
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFTAMVDALLYS 142
PD++TY L+ F A ++ EM+S C ++ T+TA++ A L S
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVV---TYTALLHAYLKS 535
>gi|302841458|ref|XP_002952274.1| hypothetical protein VOLCADRAFT_42994 [Volvox carteri f.
nagariensis]
gi|300262539|gb|EFJ46745.1| hypothetical protein VOLCADRAFT_42994 [Volvox carteri f.
nagariensis]
Length = 225
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 25/177 (14%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP-FNE 75
+ +MN I+A + +D ++ ++ G+EP + +YN L+ AC + + + +NE
Sbjct: 25 SALMNVCIKAGQHQTALDVWRELQDA--GGMEPVTRTYNTLMIACNSSNQWHEALGVYNE 82
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFT 133
L + G P+ TY L+ + A L+ ++E EM+S C ++ T++
Sbjct: 83 MLAN--------GHTPNTTTYNALITVYTKAGQLEKVMETFREMESAGCERTVI---TYS 131
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
A++ A G ++ AL +F ++++ C+ P Y S++ LAA ++
Sbjct: 132 ALISACERDGQWEL----ALQMFSQMLREGCT-----PNVITYNSLITALAAGSQWE 179
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
KL+T+ +I+ + ++EA ++ +E KG++P++++YN++I A K K+
Sbjct: 466 KLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARK 525
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ N G PD +TY +L+ G A ++ + + EM L + T+
Sbjct: 526 LRANMEAN-------GMDPDSYTYTSLIHGECIADNVDEAMRLFSEM-GLKGLDQNSVTY 577
Query: 133 TAMVDALLYSG-SIKVVGLY 151
T M+ L +G S + GLY
Sbjct: 578 TVMISGLSKAGKSDEAFGLY 597
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+DEA + E + K P+ ++YN LI K K++D M ++ S G
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM-------SQRGLV 428
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
+ TY TL+ GF A++ + +IVF+ ++ D T++ ++D L +G ++
Sbjct: 429 GNTVTYTTLIHGFFQARECDN-AQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVET--- 484
Query: 151 YALCIFGEIVKRVCSNPGLW 170
AL +F E ++R P ++
Sbjct: 485 -ALVVF-EYLQRSKMEPDIY 502
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + R + + N +IE +A ++++ + + S+ KG++P+ ++Y ++S C K
Sbjct: 490 EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +K+ G PD TY TL+ D + E++ EM+S C
Sbjct: 550 GLKEEADALFRE-MKEEGP-------LPDSGTYNTLIRAHLRDGDKAASAELIREMRS-C 600
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
+ D ST +V +L+ G +
Sbjct: 601 RFVGDASTI-GLVTNMLHDGRL 621
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ EA ++ E +++ ++PD +Y+ LI+ +LD
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD------ 378
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P++ TY TL+ GF AK + +E+ EM S L+ + T+T
Sbjct: 379 -EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM-SQRGLVGNTVTYTT 436
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA--ARVDYDIV 192
++ + C +IV + + G+ P Y ++ L +V+ +V
Sbjct: 437 LIHGFFQARE---------CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487
Query: 193 KSPY---RRMWPD 202
Y +M PD
Sbjct: 488 VFEYLQRSKMEPD 500
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +N+++ RI +A ++ + VE G +PDS ++N LI + + +
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAV 206
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+++ G PD+ TY ++ G D+ L ++ +M+
Sbjct: 207 ALVDRM-------VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKME 248
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+F+E ++R++ + + +++I+ ++ RI A Q+++ + ++G+ P+ +YN ++
Sbjct: 387 LFKE---MHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILD 443
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A KT ++D + + KD GF PDI TY+ L+ G + L+ + VFE
Sbjct: 444 ALCKTHQVDKAIALLTKFKDK-------GFQPDISTYSILIKGLCQSGKLEDARK-VFED 495
Query: 120 KSCCNLILDRSTFTAMVDALLYSG 143
LD +T M+ G
Sbjct: 496 LLVKGYNLDVYAYTIMIQGFCVEG 519
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
E+ K + N ++ A + ++ E + + + K G++P+ ++YN L+ K+++
Sbjct: 289 ENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVN- 347
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ K + GG +PDI +Y+ ++ GF K + + EM N+I D
Sbjct: 348 ------KAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK-NIIPDV 400
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T+++++D L SG I YAL + ++ R G+ P Y S++ L
Sbjct: 401 VTYSSLIDGLSKSGRIS----YALQLVDQMHDR-----GVPPNICTYNSILDAL 445
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 23/142 (16%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+++ ++ K N + N++++ + +++A I ++ + G+ PD SY+I+I+ K
Sbjct: 319 DMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKI 378
Query: 65 KKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
KK D M F E + N PD+ TY++L+ G + + L++V +M
Sbjct: 379 KKFDEAMNLFKEMHRKN--------IIPDVVTYSSLIDGLSKSGRISYALQLVDQMH--- 427
Query: 124 NLILDRS------TFTAMVDAL 139
DR T+ +++DAL
Sbjct: 428 ----DRGVPPNICTYNSILDAL 445
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 21/202 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTM 71
+ + I +I + A +L+ V+ L +P+ + YN +I + K K +
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLV---- 241
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
NE D + S G PD+ TY+ L+ GF L+ +++ F N+ D T
Sbjct: 242 --NEAF-DLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDL-FNKMILENIKPDVYT 297
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
F +V+A G +K G+ V + G+ P Y S+M + +
Sbjct: 298 FNILVNAFCKDGKMKE---------GKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNK 348
Query: 192 VKSPYRRMWPDSTGTISPEVQE 213
KS + M + G ++P++Q
Sbjct: 349 AKSIFNTM---AQGGVNPDIQS 367
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 22/182 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I VI A +A + D+A + E G P+ +YN ++ K +L+ +
Sbjct: 384 NAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDML 443
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF-EMKSCCNLILDRSTFT 133
++ NG C+ P+ T+ T+L K + + VF EMKS C +R TF
Sbjct: 444 CDMRSNG--CA-----PNSVTWNTML-AMCGNKGMHKYVNRVFREMKS-CGFEPNRDTFN 494
Query: 134 AMVDALLYSGS-IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
A++ A GS I VV +Y E++K G P Y ++++ LA R D++
Sbjct: 495 ALIGAYGRCGSQIDVVKMYE-----EMIK-----AGFTPCVTTYNALLNALARRGDWEAA 544
Query: 193 KS 194
+S
Sbjct: 545 ES 546
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
+ +K + ++ N+++ + + D A+++L + E GL+PD ++YN L+ + +
Sbjct: 623 KHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECW 682
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E++ QK SGG PD+ +Y T++ GF +Q + + EM
Sbjct: 683 K----GEEILKGIQK--SGG-KPDLVSYNTVIKGFCRQGLMQEAIRTLSEM 726
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 17/192 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R + TI N ++ A+R DEA +L + G P+++SYN +I + +
Sbjct: 184 RAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRS 243
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ +++ G +CS PD+ ++ T++ GF ++ ++ EM +
Sbjct: 244 QEALDMVQRMAKEGGRCS-----PDVVSFNTVIHGFFKQGEVSKACNLINEMVQ-KGVEP 297
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187
D T+ ++VDAL + ++ E+V R + G+ P Y +++H +
Sbjct: 298 DVVTYNSIVDALCKARAMDK---------AELVLRQMVDKGVEPDGLTYTAIIHGYSCSG 348
Query: 188 DYDIVKSPYRRM 199
+ +R+M
Sbjct: 349 HWKESAKMFRKM 360
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI + + +A ++ E V+KG+EPD ++YN ++ A K + +D
Sbjct: 263 DVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVL 322
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ D G + PD TY ++ G+ + + ++ +M S LI TF +
Sbjct: 323 RQMVDKGVE-------PDGLTYTAIIHGYSCSGHWKESAKMFRKMTS-KGLIPGIVTFNS 374
Query: 135 MVDALLYSGSIK 146
+ +L G K
Sbjct: 375 FMSSLCKHGRSK 386
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N N +I A + +DEA + ++ +G+ PD ++Y+ LISA + +L D F
Sbjct: 438 NCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKF 497
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++ + S G P+ Y +L+ GF DL E+V EM S
Sbjct: 498 SQMI--------SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMS 537
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP-FNE 75
+ N++I+ ++++A+ +L++ V G+EPD ++YN L+S K+ K+D + F E
Sbjct: 581 VTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFRE 640
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
L P TY+ +L G HA + ++ EM
Sbjct: 641 MLHKK--------VKPTTVTYSIVLDGLFHAGRTSAAKKMFHEM 676
>gi|297843920|ref|XP_002889841.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
lyrata]
gi|297335683|gb|EFH66100.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
lyrata]
Length = 665
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 31/163 (19%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTK---- 65
E K+N + N+++ + ++D ++ + +++G L+PD ++YN L++ CIK K
Sbjct: 161 ESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRGGLKPDVITYNTLLAGCIKVKNGYP 220
Query: 66 ---KLDVTMPFN----------------------EQLKDNGQKCSSGGFHPDIFTYATLL 100
+L +P N E+ ++ Q+ + G P+I+ Y++LL
Sbjct: 221 KAVELIGELPHNGIQMDSVMYGTVLAICASNGRCEEAENFIQQMKAEGHSPNIYHYSSLL 280
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
+ D + E++ EMKS L+ ++ T ++ + G
Sbjct: 281 NSYSWKGDYKKADELMTEMKS-IGLVPNKVMMTTLLKVYIKGG 322
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A ++ EA ++ E VE+G P ++YNI+I K+ + M
Sbjct: 171 DTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLY 230
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++D GFHPD TY+ ++ LQ E++F + D +
Sbjct: 231 NDMQD-------AGFHPDRVTYSIMMEVLGQIGHLQE-AELMFNEMEQAGWVPDAPIYGV 282
Query: 135 MVD 137
MVD
Sbjct: 283 MVD 285
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+ RE + + N +I A A + EA +I + E+G PD ++Y L+
Sbjct: 93 MRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVD------- 145
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
L F++ D QK GF PD FTY+ ++ A + L++ EM
Sbjct: 146 LHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEM 198
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
+E +K + +I A+ + ++L+ + + G EP ++YN LI A + L
Sbjct: 60 QEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLG 119
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
M Q+++ G CS PD TY TL+ A + +++ +M+ D
Sbjct: 120 EAMRIFYQMQEEG--CS-----PDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQ-AGFQPD 171
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
T++ ++ L +G + AL +F E+V+R G P Y ++ A +
Sbjct: 172 TFTYSVIIHCLGKAGKVS----EALKLFEEMVER-----GFAPSLVTYNIIIDLQAKSGN 222
Query: 189 YDIVKSPYRRMW-----PDS-TGTISPEVQEEAGHL 218
Y + Y M PD T +I EV + GHL
Sbjct: 223 YVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHL 258
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 16/148 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
TI++ ++A A+ + A+ +E + G +PD ++++++IS+ K ++ F +
Sbjct: 1217 TILVRRYVKAGLAAEAV-HAFNRME--DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDS 1273
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
LKD F PD+ Y +L+ G+ A ++ + EMK + + T++ ++
Sbjct: 1274 LKDR--------FEPDVVVYTSLVHGWCRAGNISEAERVFGEMK-MAGIXPNVYTYSIVI 1324
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVC 164
DAL SG I A +F E++ C
Sbjct: 1325 DALCRSGQIT----RAHDVFSEMIDVGC 1348
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + VI+A + +I A+ + E ++ G +P+++++N L+ +K + + +
Sbjct: 1316 NVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVY 1375
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K G C PD TY L+ +L+ ++I+ +K CN L+ S+F
Sbjct: 1376 NQMKRLG--CP-----PDAITYNFLIESHCRDDNLEEAVKILNSVKKGCN--LNASSFNP 1426
Query: 135 MVDALLYSGSI 145
+ + G +
Sbjct: 1427 IFGCISKLGDV 1437
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N +IE+ ++EA +IL SV+KG ++ S+N + K ++
Sbjct: 1386 DAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFA 1445
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++KD KC P+ TY L+ F K +L++ EM + + +T+ +
Sbjct: 1446 KMKD--LKC-----RPNTVTYNILMRMFADKKSTDMVLKLRKEMDE-NEIEPNANTYRVL 1497
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169
+ G A F E+++ C P L
Sbjct: 1498 ISTFCGIGHWN----NAYSFFKEMIEEKCLRPSL 1527
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I + I++A + E V +GL+ ++++YN LI + +K
Sbjct: 291 NVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKF------- 343
Query: 75 EQLKDNGQKCSS-GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++KD + + G F PD T+ TL+ HA +L L+ VFE S + D +T++
Sbjct: 344 EKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALK-VFERMSELKIQPDSATYS 402
Query: 134 AMVDALLYSG 143
A+V +L G
Sbjct: 403 ALVRSLCQGG 412
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T N +I +D+ ++I + + G EPD ++YN L+ + K VT+ +N
Sbjct: 219 DTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGK--VTVAYN 276
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+K G+K S +P++ TY TL+ G+ ++++ L + EM
Sbjct: 277 -VVKGMGKK--SVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEM 318
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 46 GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
G+ PD+ ++NILI C+ D FN+ S G PD+ TY TL+ G
Sbjct: 215 GVTPDTFTFNILIRGFCMNGMVDDGFRIFND--------LSRFGCEPDVVTYNTLVDGLC 266
Query: 105 HAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
A + +V M K +L + T+T ++ I+ AL +F E+V
Sbjct: 267 RAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIE----KALAVFEEMV--- 319
Query: 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAA 223
N GL Y +++ L ++ +K D GT SP+ + LM
Sbjct: 320 --NQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGD--GTFSPDTC--TFNTLMHCH 373
Query: 224 LNDGQVDLAL 233
+ G +D AL
Sbjct: 374 CHAGNLDDAL 383
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N +++ A +A + L + + KG+ PD ++YN LI+ IK + +D +
Sbjct: 605 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 664
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++++ G PD+ TY +L GF +Q I+ +M + DRST+T+++
Sbjct: 665 MENS-------GLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE-RGVNPDRSTYTSLI 716
Query: 137 DALLYSGSIK 146
+ + ++K
Sbjct: 717 NGHVTQNNLK 726
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 20/164 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK-LDVTMPF 73
+ + N +I A ++EA+++++S+ KGL+P +YN +I+ KT K L
Sbjct: 288 DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 347
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E LK G PD TY LL+ ++ I EM S ++ D +F+
Sbjct: 348 DEMLKI--------GMSPDTATYNILLVECCRNDNMMDAERIFDEMPS-QGVVPDLVSFS 398
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
A++ L +G + AL F R N GL P +Y
Sbjct: 399 ALIGLLSKNGCLD----QALKYF-----RDMKNAGLAPDNVIYT 433
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
I++E V R ++N +N +I A + Q+I+ L +E KG+ PD ++YN LI+
Sbjct: 241 IYQE---VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 297
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
A + L+ + + S G P +FTY ++ G
Sbjct: 298 AYCRQGLLEEAFELMDSM-------SGKGLKPCVFTYNAIINGL 334
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 33 IDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+D A++I E V G++ + + NI+I+A K +K++ T F L D +K G P
Sbjct: 235 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSF---LSDMEEK----GVFP 287
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRSTFT--AMVDALLYSG 143
D+ TY TL+ +A Q LLE FE M S L FT A+++ L +G
Sbjct: 288 DVVTYNTLI----NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 338
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 34/227 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T MN +++ + + + A + + + + PD S+N L+ K + L + E
Sbjct: 294 DTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTME 353
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFT 133
++K + GF P + TY +L+ + KD Q++ ++ EM+ C ++ T+T
Sbjct: 354 EMKQH-------GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVV---TYT 403
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD--Y 189
++ AL +G + AL F ++ G+ P Y S+++ L A R++ Y
Sbjct: 404 ILMHALGKAGRTR----EALDTFDKL-----KEDGVAPDASFYNSLIYILGRAGRLEDAY 454
Query: 190 DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
+V+ T I+P V + L+ AA + Q + AL L
Sbjct: 455 SVVEEM-------RTTGIAPNVT--TFNTLISAACDHSQAENALKLL 492
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T MN +++ + + + A + + + + PD S+N L+ K + L + E
Sbjct: 235 DTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTME 294
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--NLILDRSTF 132
++K + GF P + TY +L+ + KD Q++ ++ EM K C N++ T+
Sbjct: 295 EMKQH-------GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVV----TY 343
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD-- 188
T ++ AL +G + AL F ++ G+ P Y S+++ L A R++
Sbjct: 344 TILMHALGKAGRTR----EALDTFDKL-----KEDGVAPDASFYNSLIYILGRAGRLEDA 394
Query: 189 YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
Y +V+ T I+P V + L+ AA + Q + AL L
Sbjct: 395 YSVVEEM-------RTTGIAPNVT--TFNTLISAACDHSQAENALKLL 433
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 90/199 (45%), Gaps = 35/199 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
NT +N +I + R+ A+ +L + K G +P + ++ LI C++ K + F
Sbjct: 88 NTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLF 147
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSCCNLILDRST 131
+ K + GF PD+ TY TL+ G + + + + E ++C ++
Sbjct: 148 D--------KMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVV---V 196
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL-------- 183
++ ++D+L + AL +F +++ + G+ P Y S++H L
Sbjct: 197 YSTIIDSLCKDRQLT----EALSLFSDMLAK-----GISPNNFTYSSLIHGLCILGHWKE 247
Query: 184 AARVDYDIVKSPYRRMWPD 202
A R+ Y ++ +R++ PD
Sbjct: 248 AIRLFYAMI---HRKIMPD 263
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
+++ + K + + N++++ + + + ++ V KG P +SY LI+ K
Sbjct: 288 DVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKI 347
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ +D M E++ S G PD TY TL+ G H L+ + + EM
Sbjct: 348 QIMDKAMGLFEEM-------SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEM 395
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 16 NTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+ + N +++A +E + Y + ++ L+PD ++YN L+ C++++ F
Sbjct: 263 DQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVF 322
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ ++ G P + +Y TL+ G+ + + + + FE S LI D T+
Sbjct: 323 DTMVRK--------GCVPSVISYTTLINGYCKIQIMDKAMGL-FEEMSQQGLIPDTVTYN 373
Query: 134 AMVDALLYSGSIK--VVGLYALCIFGEI 159
++ L + G ++ + + + ++G+I
Sbjct: 374 TLIHGLCHVGRLRDAIALFHEMVVYGQI 401
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 31 QRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
R+ EA +L+ +E L+PD Y+I++ + +L E +D K SS G
Sbjct: 418 HRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGEL-------EAARDLFSKLSSKGL 470
Query: 90 HPDIFTYATLLMGF 103
HPD+ TY ++ G
Sbjct: 471 HPDVRTYTIMINGL 484
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 30/191 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+ + + +D A ++L E KGLE + +YN L++ K +D +
Sbjct: 362 NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLM 421
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS---- 130
+ ++ GFHPD TY TL+ + ++++ E++ +M LDR
Sbjct: 422 KDME-------VAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM-------LDRELQPT 467
Query: 131 --TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
TF +++ SG ++ GE + + G+ P Y S++ + R +
Sbjct: 468 VVTFNVLMNGFCMSGMLED---------GEKLLKWMLEKGIMPNATTYNSLIKQYCIRNN 518
Query: 189 YDIVKSPYRRM 199
YR M
Sbjct: 519 MRATTEIYRGM 529
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I AVI + R+ EA ++ E V K LEPD ++Y LI K K+ + Q
Sbjct: 294 ITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQ 353
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC--NLILDRSTFTA 134
+ G P+I TY L G ++ + E++ EM C L L+ T+ +
Sbjct: 354 M-------LQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM---CRKGLELNIYTYNS 403
Query: 135 MVDALLYSGSI 145
+V+ L +G+I
Sbjct: 404 LVNGLCKAGNI 414
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N N VI + ++ EA ++L E + +G+ PD + Y LI K +
Sbjct: 220 KPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAY- 278
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+L D QK PD TY ++ G + ++ EM C L D T+
Sbjct: 279 ---RLFDEMQK---RKISPDFITYTAVICGLCQTGRVMEADKLFHEM-VCKRLEPDEVTY 331
Query: 133 TAMVDALLYSGSIK 146
TA++D G +K
Sbjct: 332 TALIDGYCKEGKMK 345
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68
R+ +LN N+++ +A ID+A ++++ +E G PD+++Y L+ A K++++
Sbjct: 391 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMV 450
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
Q+ D P + T+ L+ GF
Sbjct: 451 RAHELLRQMLDR-------ELQPTVVTFNVLMNGF 478
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 24 IEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQ 82
I A + R+DEA +++ G PD ++Y +I K +LD M Q+ D+G
Sbjct: 303 IYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDG- 361
Query: 83 KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142
P+I T+ TL+ GF + E+ +EM + D + FTAM+D L
Sbjct: 362 ------LSPNIITFTTLIHGFSMYGKWEKAEELFYEMMD-RGIPPDVTIFTAMIDRLFKE 414
Query: 143 GSI 145
G +
Sbjct: 415 GKV 417
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K +T+ N ++ R+DEA + E V+KG+E D ++YNILI K +L +
Sbjct: 357 KESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQ 416
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTY--------ATLLMGFRHAKDLQSLLEI 115
EQL +G + S F P I T A L+ HAK L+ L I
Sbjct: 417 VYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARI 467
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 31/170 (18%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
NEI R + ++ + I+ + IDEA QI E V+KG+EP+ +Y L++ K
Sbjct: 279 NEIKLR-GYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCK 337
Query: 64 TKKLDVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFT 95
++ +++ G K C+ G G D+ T
Sbjct: 338 AGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVIT 397
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
Y L+ G A L ++ V+E L STFT ++D + G +
Sbjct: 398 YNILIQGLCKAGRLSEAIQ-VYEQLLSSGLEPSVSTFTPLIDTMCEEGQV 446
>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
Length = 1039
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ ++I+A + ++ A ++ + E +G P++ +Y+ LI I+ +KL M
Sbjct: 461 NVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALI 520
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++++G P + TY TL+ G + + + FEM L D +
Sbjct: 521 TKMQEDG-------ITPGVITYTTLIQGQCKKHEFDNAFRL-FEMMEQNGLTPDEQAYNV 572
Query: 135 MVDALLYSG 143
+ DAL SG
Sbjct: 573 LTDALCKSG 581
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 35/222 (15%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I +I+ + D A+++ E +E+ GL PD +YN+L A K+ + + F
Sbjct: 533 ITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSF--- 589
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAM 135
L G + TY +L+ GF A + + ++ +M C D T++ +
Sbjct: 590 LVKKGVVLTK-------VTYTSLVDGFSKAGNTEFAAALIEKMVNEGCK--ADSHTYSVL 640
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+ AL + AL I ++ R G+ Y ++ E+ +D KS
Sbjct: 641 LQALCKQKKLN----EALSILDQMTLR-----GVKGNIVAYTIIISEMIKEGKHDHAKSM 691
Query: 196 YRRMWPDS--------TGTISPEVQ----EEAGHLLMEAALN 225
+ M T IS + EEAGHL+ E N
Sbjct: 692 FNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERN 733
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 22/182 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I VI A +A + D+A + E G P+ +YN ++ K +L+ +
Sbjct: 384 NAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDML 443
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF-EMKSCCNLILDRSTFT 133
++ NG C+ P+ T+ T+L K + + VF EMKS C +R TF
Sbjct: 444 CDMRSNG--CA-----PNSVTWNTML-AMCGNKGMHKYVNRVFREMKS-CGFEPNRDTFN 494
Query: 134 AMVDALLYSGS-IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
A++ A GS I VV +Y E++K G P Y ++++ LA R D++
Sbjct: 495 ALIGAYGRCGSQIDVVKMYE-----EMIK-----AGFTPCVTTYNALLNALARRGDWEAA 544
Query: 193 KS 194
+S
Sbjct: 545 ES 546
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
+ +K + ++ N+++ + + D A+++L + E GL+PD ++YN L+ + +
Sbjct: 623 KHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECW 682
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E++ QK SGG PD+ +Y T++ GF +Q + + EM
Sbjct: 683 K----GEEILKGIQK--SGG-KPDLVSYNTVIKGFCRQGLMQEAIRTLSEM 726
>gi|302785101|ref|XP_002974322.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
gi|300157920|gb|EFJ24544.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
Length = 522
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ ++ VI+ +A++ D+A LE +E PD ++Y+ I K+D +
Sbjct: 106 HVVLYTTVIDGLCKARQFDKACSYLEKME---SPDIVTYSAFIDGLCNVGKVDYAFELLK 162
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+++ G PD+ Y + G A + + +E+ ++M+ + T+ ++
Sbjct: 163 QIQERGNA------RPDVVLYTIFIKGLCKAGQVDNAVELFYKMED-IGCPPNAVTYNSL 215
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG-LWPKPHLYVSMMH-----ELAARVDY 189
+ AL + S+ A +F E++++ C G +P +Y +++ E A VD
Sbjct: 216 MRALAWHKSVDA----ARRLFTEMIRKGCEPDGATYPTVGMYATLVRAFLRDERAMEVD- 270
Query: 190 DIVKSPYRR 198
++VK RR
Sbjct: 271 ELVKDMVRR 279
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I + RIDEA +L+ +EK L PD+ SY+ LISA K +LD+ +
Sbjct: 321 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 380
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + N G PDI Y T+L + LEI +++ + S++
Sbjct: 381 DYMISN-------GCLPDIVNYNTILAALCKNGNANQALEIFNKLRG-MGCPPNVSSYNT 432
Query: 135 MVDALLYSG 143
M+ AL G
Sbjct: 433 MISALWSCG 441
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 105/227 (46%), Gaps = 26/227 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
E + + + + I+ +I+ + I++A +++E +E EPD +YN +IS K
Sbjct: 102 ECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVN 161
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE--MKSCC 123
+++ ++K + GF PDI TY ++ + + L L ++ + + +C
Sbjct: 162 QIEAATQVLNRMK-------ARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCM 214
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ T+T +++A + G I A+ + E++ R GL P + Y +++ +
Sbjct: 215 PTVI---TYTILIEATIVEGGIN----EAMKLLEEMLAR-----GLLPDMYTYNAIIRGM 262
Query: 184 AARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVD 230
+V+ + ++ P+V + ++L+ A LN G+ D
Sbjct: 263 CKE---GMVERAAELITSLTSKGCEPDVI--SYNILLRAFLNQGKWD 304
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD 68
R + + + NA+I + +D A++I+ +EK + PD ++YN L+ +LD
Sbjct: 352 RRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLD 411
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
E++ G PD+ +Y TL+ G+ D++ +++ EM
Sbjct: 412 EARGLIEEMTKR-------GIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMG------- 457
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGE------IVKRVCSNPGLWPKPHLYVSMMHE 182
F + L Y+ IK LC+ G+ +VK + N G+ P Y+S++
Sbjct: 458 -KGFNPTL--LTYNAMIK-----GLCLNGQGGDAEDLVKEMVGN-GITPDDSTYISLIEG 508
Query: 183 L 183
L
Sbjct: 509 L 509
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDV 69
R L+T N ++ A + A ++L + P++++YN +I+ ++
Sbjct: 109 RLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMP---SPNAVTYNTVIAGFCARGRVQA 165
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ ++++ G G PD +TYAT++ G+ ++ ++ EM + + +
Sbjct: 166 GIEIMREMRERG------GIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNA 219
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+ A++ G+++V AL GE+V R S
Sbjct: 220 VMYNALIGGYCDQGNLEV----ALRYRGEMVDRGVS 251
>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 543
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEP-DSLSYNILISACIKTKKLDVTMPFN 74
+T +N +I+A + ++ A++++ KGL P S S+N+L+ + +K D
Sbjct: 228 DTAALNVLIDALVKGDSVEHAHKVVLEF-KGLIPLSSHSFNVLMHGWCRARKFDNARKAM 286
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E +K+ G F PD+F+Y + + + H +D + + +++ EM+
Sbjct: 287 EDMKELG-------FEPDVFSYTSFIEAYCHERDFRKVDQVLEEMR 325
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L++ N ++ A++ D A + +E + E G EPD SY I A +
Sbjct: 261 LSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQV 320
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++++NG C P+ TY T+++ A L LE+ +MK C + D ++
Sbjct: 321 LEEMRENG--CP-----PNAVTYTTVMLHLGKAGQLSKALEVYEKMK-CDGCVADTPVYS 372
Query: 134 AMVDALLYSGSIK 146
M+ L +G +K
Sbjct: 373 CMIFILGKAGRLK 385
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T V + +I +A R+ +A + E + K G+ D ++YN +IS + + +
Sbjct: 367 DTPVYSCMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLL 426
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++++D K + G +HP L+ K +L+ + + ++ D +T++
Sbjct: 427 KEMEDGSCKPNVGTYHP--------LLKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSL 478
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+V+AL +G KV Y+ E+V + G PKP + EL
Sbjct: 479 LVNALCKTG--KVADAYSF--LEEMVLK-----GFTPKPSTLKGLAGEL 518
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 19/171 (11%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYN-ILISACIKTKKLDVT 70
K + IV N +++ A+R D+A +L E G+EPD++SY+ +L S C ++
Sbjct: 151 KTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRAL 210
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+ +K SGG P++ +Y T++ GF ++ + EM ++ D
Sbjct: 211 DLLHTMVK------KSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQ-QGVVPDVV 263
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
T+++ +DAL + ++ L +++++ SN G P Y M+H
Sbjct: 264 TYSSYIDALCKARAMDKAEL--------VLRQMISN-GFEPDKVTYNCMIH 305
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQ 76
V N +I+A + +DEA I + E+G+ PD+ +Y +I+A + +L D FN+
Sbjct: 404 VYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQM 463
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + G PD Y +L+ GF +L E++ EM S
Sbjct: 464 I--------AMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMS 500
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
+E+++R + NT+ N++I + + R+ EA I + V G PD +++N LI
Sbjct: 496 SEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGL 555
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++ + + S G PD+ TY+ LL G+ + L + EM S
Sbjct: 556 VGKMEKAFGVLDAM-------ISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLS 606
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 23/154 (14%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +GL PD + N +S+ K K F + + G K PD+ TY+ LL
Sbjct: 322 EMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHK-------PDLVTYSVLL 374
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G+ + +L + M+ ++ D S + ++DA G + A+ IF ++
Sbjct: 375 HGYAAEGYVVDMLNLFNSMEG-NGIVADHSVYNILIDAYGKRGMMD----EAMLIFTQMQ 429
Query: 161 KRVCSNPGLWPKPHLY------VSMMHELAARVD 188
+R G+ P Y S M LA +D
Sbjct: 430 ER-----GVMPDAWTYGTVIAAFSRMGRLADAMD 458
>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 538
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT +N V+ + ++D+ ++L+ +E+ G +SYN LI+ + L +
Sbjct: 237 NTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKLK 296
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ NG P++ T+ TL+ GF A LQ ++ EMK+ NL + T+
Sbjct: 297 NMMGKNG-------LQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKA-LNLPPNTVTYNT 348
Query: 135 MVDALLYSG 143
+++ G
Sbjct: 349 LINGYSQQG 357
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I A ++ EA ++ ++ L P++++YN LI+ + ++ F
Sbjct: 307 NVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFY 366
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + NG DI TY TL++G + + V E+ NL+ + STF+A
Sbjct: 367 EDMVCNG-------IQRDILTYNTLILGLCKQAKTRKAAQFVKELDK-ENLVPNSSTFSA 418
Query: 135 MV 136
++
Sbjct: 419 LI 420
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NTI+ A+ E+ A + ++ ++ E G+ P S +Y+ILI KT +++ M E
Sbjct: 374 NTII-KALFESKSRASEVPSWFERMK--ESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 430
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ + GF P Y +L+ AK E+ E+K C R + M
Sbjct: 431 EMDEK-------GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSAR-VYAVM 482
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+ L +G + A+ +F E+ K C+ P + Y ++M LA D S
Sbjct: 483 IKHLGKAGRLDD----AINMFDEMNKLGCA-----PDVYAYNALMSGLARTGMLDEALST 533
Query: 196 YRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238
RRM G I P++ + ++++ G A++ LSN
Sbjct: 534 MRRM--QEHGCI-PDIN--SYNIILNGLAKTGGPHRAMEMLSN 571
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
NE+ H +T+ +A+I A + R D A Q+L E E G++P + Y +LI+ K
Sbjct: 218 NEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFK 277
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ + E+++ Q C PD+FTY L+ G A + +EM+
Sbjct: 278 LDDVHGALSLFEEMRH--QYC-----RPDVFTYTELIRGLGKAGRIDEAYHFFYEMQ 327
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+FEE + ++ + + +I +A RIDEAY +++ G PD++ N +I+
Sbjct: 287 LFEE---MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMIN 343
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +LD M +++ +C P + TY T++ +K S + FE
Sbjct: 344 FLGKAGRLDDAMKLFQEM--GTLRCI-----PSVVTYNTIIKALFESKSRASEVPSWFER 396
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
+ T++ ++D + ++ A+ + E+ ++ G P P Y S+
Sbjct: 397 MKESGISPSSFTYSILIDGFCKTNRME----KAMMLLEEMDEK-----GFPPCPAAYCSL 447
Query: 180 MHELAARVDYDIV 192
+ L YD+
Sbjct: 448 IDALGKAKRYDLA 460
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 30/140 (21%)
Query: 29 EAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG------ 81
+A R+D+A + + + K G PD +YN L+S +T LD + +++++G
Sbjct: 488 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 547
Query: 82 -------QKCSSGGFH---------------PDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+GG H PD+ +Y T+L HA + +++ EM
Sbjct: 548 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEM 607
Query: 120 KSCCNLILDRSTFTAMVDAL 139
+ D T++++++A+
Sbjct: 608 NT-LGFEYDLITYSSILEAI 626
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 30/191 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+ + + +D A ++L E KGLE + +YN L++ K +D +
Sbjct: 462 NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLM 521
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS---- 130
+ ++ GFHPD TY TL+ + ++++ E++ +M LDR
Sbjct: 522 KDME-------VAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM-------LDRELQPT 567
Query: 131 --TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
TF +++ SG ++ GE + + G+ P Y S++ + R +
Sbjct: 568 VVTFNVLMNGFCMSGMLED---------GEKLLKWMLEKGIMPNATTYNSLIKQYCIRNN 618
Query: 189 YDIVKSPYRRM 199
YR M
Sbjct: 619 MRATTEIYRGM 629
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I AVI + R+ EA ++ E V K LEPD ++Y LI K K+ + Q
Sbjct: 394 ITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQ 453
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC--NLILDRSTFTA 134
+ G P+I TY L G ++ + E++ EM C L L+ T+ +
Sbjct: 454 M-------LQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM---CRKGLELNIYTYNS 503
Query: 135 MVDALLYSGSI 145
+V+ L +G+I
Sbjct: 504 LVNGLCKAGNI 514
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 30/159 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT N + + + R+ EA+Q+L +E +G PD +SY+ +I+ + +L +
Sbjct: 252 NTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLI 311
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
E+++ G K C +G G PD Y TL+ GF
Sbjct: 312 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKL 371
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
++ S + EM+ + D T+TA++ L +G +
Sbjct: 372 GNVSSAYRLFDEMQK-RKISPDFITYTAVICGLCQTGRV 409
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N N VI + ++ EA ++L E + +G+ PD + Y LI K +
Sbjct: 320 KPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAY- 378
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+L D QK PD TY ++ G + ++ EM C L D T+
Sbjct: 379 ---RLFDEMQK---RKISPDFITYTAVICGLCQTGRVMEADKLFHEM-VCKRLEPDEVTY 431
Query: 133 TAMVDALLYSGSIK 146
TA++D G +K
Sbjct: 432 TALIDGYCKEGKMK 445
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 5 NEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
NE+++ R+ +LN N+++ +A ID+A ++++ +E G PD+++Y L+ A
Sbjct: 483 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 542
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
K++++ Q+ D P + T+ L+ GF
Sbjct: 543 YCKSREMVRAHELLRQMLDR-------ELQPTVVTFNVLMNGF 578
>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Brachypodium distachyon]
Length = 570
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T MNA+++ + + + A + + + + PD S+N L+ + + L+
Sbjct: 229 DTKAMNALLDTLCKEKSVKRARGVFQELRGVVPPDESSFNTLVHGWCQARMLN------- 281
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+ +D ++ GF P + TY +L+ + KD Q++ I+ EM K C ++ T+T
Sbjct: 282 EARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVI---TYT 338
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++ AL +G + AL +F ++ + C P Y S+++ L
Sbjct: 339 IVMHALGKAGRTQ----EALDVFDKVKRDGCV-----PDASFYNSIIYILG 380
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I + RIDEA +L+ +EK L PD+ SY+ LISA K +LD+ +
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 370
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + N G PDI Y T+L + LEI +++ + S++
Sbjct: 371 DYMISN-------GCLPDIVNYNTILAALCKNGNANQALEIFNKLRG-MGCPPNVSSYNT 422
Query: 135 MVDALLYSG 143
M+ AL G
Sbjct: 423 MISALWSCG 431
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 106/227 (46%), Gaps = 26/227 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
E + + + + I+ +I+ + I++A +++E +E EPD +YN +IS K
Sbjct: 92 ECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVN 151
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE--MKSCC 123
+++ ++K + GF PDI TY ++ + + L L+++ + + +C
Sbjct: 152 RIEAATQVLNRMK-------ARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM 204
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ T+T +++A + G I A+ + E++ R GL P + Y +++ +
Sbjct: 205 PTVI---TYTILIEATIVEGGIN----EAMKLLEEMLAR-----GLLPDMYTYNAIIRGM 252
Query: 184 AARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVD 230
+V+ + ++ P+V + ++L+ A LN G+ D
Sbjct: 253 CKE---GMVERAAELITSLTSKGCKPDVI--SYNILLRAFLNQGKWD 294
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 32/245 (13%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVT 70
H + + NAVI + RI+ A Q+L ++ +G PD ++YNI+I + +KL +
Sbjct: 132 HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 191
Query: 71 MPFNEQ-LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ +Q L DN P + TY L+ + ++++ EM + L+ D
Sbjct: 192 LKVLDQLLLDNCM--------PTVITYTILIEATIVEGGINEAMKLLEEMLA-RGLLPDM 242
Query: 130 STFTAMVDALLYSG----------SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
T+ A++ + G S+ G I I+ R N G W + V+
Sbjct: 243 YTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAE 302
Query: 180 MHELAA---RVDYDIVKSPYRRMW--PDSTGTISPEVQEE------AGHLLMEAALNDGQ 228
M +V Y I+ S R ++ + +++E + L+ A +G+
Sbjct: 303 MFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGR 362
Query: 229 VDLAL 233
+DLA+
Sbjct: 363 LDLAI 367
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 31/124 (25%)
Query: 10 REHWKLNTIVMNAVIEAS-REAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL 67
R + + + N VI RE +++D AY + + +++GL PD ++YN +ISA K + +
Sbjct: 195 RGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAM 254
Query: 68 DVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTYATL 99
D ++ NG CSSG G PD+FTY T
Sbjct: 255 DKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNT- 313
Query: 100 LMGF 103
LMG+
Sbjct: 314 LMGY 317
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
+++ R + + I N +I+ ++DEA ++LE V G++P+ ++YN +I+ K
Sbjct: 507 DLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKN 566
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ Q+ +S G +P I TY+T+L G A+ + E+ M
Sbjct: 567 GRIEDAFSLFRQM-------ASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWM 614
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS-ACIKTKKLDVTMPF 73
N I N+++ + + ++A + + + G+EPD +YN L+ C + ++ F
Sbjct: 272 NRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIF 331
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ +K G P+ TY TLL G+ L + ++ +M + D F
Sbjct: 332 DSMVKR--------GHKPNSATYGTLLHGYATEGSLVKMHHLL-DMMVRNGIQPDHYIFN 382
Query: 134 AMV----------DALLYSGSIKVVGLY-----------ALCIFGEI------VKRVCSN 166
++ DA+L ++ GL ALC+ G++ R+ S
Sbjct: 383 ILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISE 442
Query: 167 PGLWPKPHLYVSMMHELAARVDYD 190
GL P ++ +++H L AR +D
Sbjct: 443 -GLTPDAVVFRNLIHGLCARDKWD 465
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIK-TKKLDVTMPF 73
TI++ + + +R Q + + ++ + G PD +SYN +I+ ++ ++LD
Sbjct: 166 TILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHL 225
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+Q+ D G PD+ TY +++ A+ + ++ M + +R T
Sbjct: 226 FDQMLDQ-------GLSPDVVTYNSIISALSKARAMDKAAVVLVRMVK-NGAMPNRITHN 277
Query: 134 AMVDALLYSGSIK-VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+++ SG +G++ KR+C + G+ P Y ++M L
Sbjct: 278 SLLHGYCSSGKPNDAIGVF---------KRMCRD-GVEPDVFTYNTLMGYL 318
>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 376
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V NA++ +I + +++ E + S+NI++ K+D + E
Sbjct: 24 DAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWE 83
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+K++ GF D TY L+ GF + L V EM +LD ++AM
Sbjct: 84 LMKES-------GFVEDSITYGILVHGFCKNGYIDKSLH-VLEMAEQKGGVLDAFAYSAM 135
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
++ L ++ AL + ++K C P H+Y ++++ LA ++
Sbjct: 136 INGLCKEANLD----RALSVLNGMIKSGCK-----PNVHVYNTLINGLAGASKFEDAIRV 186
Query: 196 YRRM 199
+R M
Sbjct: 187 FREM 190
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 2 FEENEIVNRE----HWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
FE+ V RE H I N +I + + EAY ++ E ++KGL+P ++Y++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
L+ K++ + Q+ +S GF PD+ + L+ G +Q L +
Sbjct: 240 LMKGLCLDHKVERALQLWNQV-------TSKGFKPDVQMHNILIHGLCSVGKIQLALSLY 292
Query: 117 FEM 119
F+M
Sbjct: 293 FDM 295
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + D AY++L + ++GL PD +Y +I + K+K+++
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF 520
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ L+ G +P++ Y L+ G+ A + ++ E N + + TF A
Sbjct: 521 DSLEQK-------GVNPNVVMYTALIDGYCKAGKVDE-AHLMLEKMLSKNCLPNSLTFNA 572
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L G +K L + ++VK GL P ++H L D+D S
Sbjct: 573 LIHGLCADGKLKEATL----LEEKMVK-----IGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 195 PYRRMWPDSTGT 206
+++M S+GT
Sbjct: 624 RFQQML--SSGT 633
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+KL N ++ + +DE Q+ +E +E + P+ +YN +++ K +
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNV---- 234
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
E+ K G PD FTY +L+MG+ KDL S ++ EM K C
Sbjct: 235 ---EEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGC 284
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 41/198 (20%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ A+I+ +A ++DEA+ +LE + K P+SL++N LI KL
Sbjct: 531 NVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLE 590
Query: 75 EQ--------------------LKDNG--------QKCSSGGFHPDIFTYATLLMGFRHA 106
E+ LKD Q+ S G PD TY T + +
Sbjct: 591 EKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCRE 650
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG-EIVKRVCS 165
L +++ +M+ D YS IK G F +++KR+
Sbjct: 651 GRLLDAEDMMAKMRE----------NGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM-R 699
Query: 166 NPGLWPKPHLYVSMMHEL 183
+ G P H ++S++ L
Sbjct: 700 DTGCEPSQHTFLSLIKHL 717
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA I A + + A IL +E G P+ LSYN +I K+ +D + ++ D
Sbjct: 298 NAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLD 357
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
SG PD+ + TL+ GF A L +++ EMK+ + D T+ ++D
Sbjct: 358 ------SGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQ 411
Query: 140 LYSGSIK 146
GS+K
Sbjct: 412 SKFGSLK 418
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +E G PD ++YN IS K KLD + E++ GG PD+ T+ +++
Sbjct: 177 EMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEM-------DRGGIPPDVVTFCSII 229
Query: 101 MGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIKVV 148
G A + ++ M + C + D T++ M+D L + + V
Sbjct: 230 SGLCKANRIDDAFQVFKGMLERGC---VPDSLTYSIMLDNLSRANRLDTV 276
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + A+I + +EA + + + KG PD ++YN ++SA K +
Sbjct: 433 KPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEG 492
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+QLK+ CS PD TY L+ G+ A+D + L ++ EM +
Sbjct: 493 VYQQLKNKTSYCS-----PDAITYRILIDGYCRAEDTEQGLTLLQEMTA 536
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N + A+I+ +A+R +A Q ++ + G EPD ++YN LI C+ + D +
Sbjct: 44 NVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVL 103
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM---KSCCNLIL 127
E +++ GF P+ TY+TL++ + L ++ EM S CNL++
Sbjct: 104 QELVRN--------GFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVV 152
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
E ++R + + ++I +A RID+A+Q+ + +E+G PDSL+Y+I++ +
Sbjct: 211 EEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRA 270
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSLLEIVFEMKSCC 123
+LD E ++ C + + F A G F AK++ LL ++ E S
Sbjct: 271 NRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNI--LLGMI-ESGSLP 327
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
NL+ ++ ++D L SG++
Sbjct: 328 NLL----SYNFVIDGLCKSGNV 345
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGL-EPDSLSYNILISACIKTKKLDVTM 71
K + I N +I +A R+ +A+Q+L E K + PD ++YN LI K L
Sbjct: 362 KPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSL---- 417
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAKDLQSLLEIVFEMKSCCNLILDRS 130
+Q K Q+ + G P++ TYA L+ G+ +H + E +F+ S D
Sbjct: 418 ---KQAKLLLQEMQAVGCKPNVVTYAALINGYAKHG--MYEEAESLFDEMSAKGCFPDII 472
Query: 131 TFTAMVDALLYSGSI-KVVGLY 151
T+ ++ A +G + K G+Y
Sbjct: 473 TYNTVLSAFSKAGMMSKAEGVY 494
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD 68
R+ K + N VI+ + + +A + L + + +G+ PDS++YN LI+ +K + +D
Sbjct: 528 RKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMD 587
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+++ + G PD+ TY +L GF +Q E++ + D
Sbjct: 588 KAFFLINKME-------TKGLQPDVVTYNVILNGFCRQGRMQE-AELILRKMIERGIDPD 639
Query: 129 RSTFTAMVDALLYSGSIK 146
RST+T +++ + ++K
Sbjct: 640 RSTYTTLINGYVSQDNLK 657
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
++I N +I + + +D+A+ ++ +E KGL+PD ++YN++++ C + + + +
Sbjct: 569 DSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELIL 628
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ ++ G PD TY TL+ G+ +L+ EM
Sbjct: 629 RKMIER--------GIDPDRSTYTTLINGYVSQDNLKEAFRFHDEM 666
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 23/229 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
+I+ R+ + ++ N+++ + +D A+++ + + G+E + + NI+++A K
Sbjct: 139 KILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKD 198
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+D PF L D QK G DI TY TL+ + L E++ M S
Sbjct: 199 HKIDDVKPF---LIDMEQK----GIFADIVTYNTLINAYCREGLLGEAFEVMNSM-SGKG 250
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L T+ A+++ L G + A +F E++ + GL P Y +++ E
Sbjct: 251 LKPTLFTYNAVINGLCKKGRY----VRAKGVFNEML-----SIGLSPDTTTYNTLLVESC 301
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
++ K + M +SP++ + L+ + +G +D AL
Sbjct: 302 RNNNFLEAKDIFSDMLHRG---VSPDLISFSS--LIGVSSRNGHLDQAL 345
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++I+ ++ RI A Q+++ + ++G+ P+ L+YN +I A KT ++D +
Sbjct: 251 NVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALI 310
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLE 114
+ KD G P ++TY L+ G KD +++ E
Sbjct: 311 TKFKDQ-------GIQPSMYTYTILIDGLCKGGRLKDARNIFE 346
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
E+ K + N +++ + +++ E + + K G+ PD ++YN L+ K+++
Sbjct: 141 ENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNT 200
Query: 70 TMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
FN + GG +PDI +Y L+ GF K + + + EM C N+I +
Sbjct: 201 AKSIFNTM--------AQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEM-HCKNIIPN 251
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T+ +++D L SG I YAL + ++ R G+ P Y S++ L
Sbjct: 252 VVTYNSLIDGLSKSGRIS----YALQLVDQMHDR-----GVPPNILTYNSIIDAL 297
>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 790
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 2 FEENEIVN--REHW-KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNIL 57
E E++N EHW N I +AV+ R ++ EA + E +EKG P+ + N+L
Sbjct: 495 LEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLL 554
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
I + + + + + E+ C G ++ + +++ GF DL + L ++
Sbjct: 555 IQSLCRNQNVVGAKKYLEE-------CLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLE 607
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+M N D T+T + DAL + + + G+ G+ P P Y
Sbjct: 608 DM-YLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGK---------GIDPTPVTYR 657
Query: 178 SMMHELA--ARVDYDIVK 193
+++H RVD D++K
Sbjct: 658 AVIHRFCQWGRVD-DMMK 674
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 31 QRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
++++E +++E++ L PD ++YN LI A K D + F L++ +K G
Sbjct: 351 RKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVF---LREAEEK----G 403
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDALLYSGSI 145
FH D Y+ ++ F K++ +V +M S CN D T+TA++D G I
Sbjct: 404 FHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCN--PDVVTYTAIIDGFCRVGKI 459
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD------VTM 71
+ N I + ++++A + LE ++ G+EPD +SYN LI ++D M
Sbjct: 269 ICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEM 328
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
PF G PD +Y T++ + ++ + ++ M NLI D+ T
Sbjct: 329 PFK-------------GCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVT 375
Query: 132 FTAMVDALLYSG 143
+ ++ AL G
Sbjct: 376 YNTLIYALSKHG 387
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
V+ + A + A +IL ++K G+EPD N I +K KL+ + F E++K
Sbjct: 238 VMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMK--- 294
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
G PDI +Y L+ G+ + LE++ EM K C
Sbjct: 295 ----VAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGC 333
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+ ++ + +AV+++ + + ID+A +++ KG PD ++Y +I + K+D
Sbjct: 404 FHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAK 463
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
+Q+ +G K P+ TY LL G H
Sbjct: 464 KMLQQMYKHGCK-------PNTVTYTVLLNGLCH 490
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+ N +I+ +A++I+ A ++ + +GLEP+ ++Y ++I K+ +L E
Sbjct: 485 IFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQL-------ENA 537
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
KD G P++ T+ TL+ GF ++Q ++E++ EM + D ST + +VD
Sbjct: 538 KDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAE-KDFSPDASTISIVVD 596
Query: 138 AL 139
L
Sbjct: 597 LL 598
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+T N +I+ RID+A + S+E KG+E D++SYN+LI+ C + ++ +
Sbjct: 342 DTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLY 401
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E + C P + TY TLL G ++ + EMK +L + T+
Sbjct: 402 REMM------CKE--IMPTVITYNTLLTGLFREGKVRDAWNLFGEMK-VHDLTPESCTYN 452
Query: 134 AMVDAL 139
++D L
Sbjct: 453 ILLDGL 458
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +++I R + A + E V++G+ P+ +++N+LI A K K++ N
Sbjct: 272 DVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEA---N 328
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK Q+ G PD FTY TL+ GF + ++ M+S + D ++
Sbjct: 329 HLLKLMIQR----GESPDTFTYNTLIDGFCLEGRIDDARDLFVSMES-KGIETDAVSYNV 383
Query: 135 MVDALLYSGSI 145
+++ SG +
Sbjct: 384 LINGYCKSGRM 394
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+L+ I N +I+A + +D + +LE V KG++P++ SYN+LI+ K K+ +
Sbjct: 520 QLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALE 579
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
++++ + G PDI TY TL+ G
Sbjct: 580 LSKEMLNQ-------GLTPDIVTYNTLINGL 603
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 33/152 (21%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
++N +++N VI ++ A ++ E + KG PD +Y+IL+ K + +
Sbjct: 310 EVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVR 369
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++++ G C+ P+I TY+TLL F C N + D +
Sbjct: 370 MLDEMEEKG--CA-----PNIVTYSTLLHSF------------------CRNGMWDDA-- 402
Query: 133 TAMVDALLYSG-SIKVVG----LYALCIFGEI 159
AM+D +L G S+ G +YALC G++
Sbjct: 403 RAMLDQMLAKGFSMNSQGYNGIIYALCKDGKL 434
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 34 DEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D+A +L+ + KG +S YN +I A K KLD +++K G K PD
Sbjct: 400 DDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCK-------PD 452
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
I TY T++ + DL E +F ++ + T+ ++ ALL +G
Sbjct: 453 ICTYNTMIYHLCN-NDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNG 502
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
++V +K N +I + ++ A +L VE+GL P++ +Y LI K
Sbjct: 311 KLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKG 370
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
D ++K G F P+I+TY ++ GF +Q + V M +
Sbjct: 371 GSFDRAFELMNKMKLEG-------FLPNIYTYNAIIGGFCKKGKIQEAYK-VLRMATSQG 422
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
L LD+ T+T ++ G I AL +F ++ ++ C P H Y +++
Sbjct: 423 LHLDKVTYTILITEHCKQGHITC----ALDLFKQMAEKSCH-----PDIHTYTTII 469
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA 60
FE + E + N NA+I + +I EAY++L + +GL D ++Y ILI+
Sbjct: 377 FELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITE 436
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K + + +Q+ + + C HPDI TY T++ + + + +F+
Sbjct: 437 HCKQGHITCALDLFKQMAE--KSC-----HPDIHTYTTIIAMY-CQQRQMEQSQQLFDKC 488
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
L+ + T+T+M+ G + AL +F +V+ C
Sbjct: 489 LSIGLVPTKQTYTSMIAGYCRLGKLTS----ALKVFERMVQHGC 528
>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 375
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 2 FEENEIVNRE---HWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNIL 57
FE+ V RE H N + N +I + +R EAY ++ E +EKG +P +Y++L
Sbjct: 180 FEDATRVFREMGTHCSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLL 239
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
+ KLD+ + Q+ + GF PD+ + L+ G Q L + F
Sbjct: 240 MKGLCLGHKLDMAINLWNQV-------IAKGFKPDVQMHNILIHGLCSVGKTQLALSLYF 292
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
M N + T+ +++ G ++ AL I+ I++
Sbjct: 293 NMNX-WNCAPNLVTYNTLMEGFYKDGDLR----NALAIWAHILRN 332
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 78/185 (42%), Gaps = 19/185 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V NA++ RI +++ E + + + S+NI++ ++D + E
Sbjct: 24 DAVVYNAMLNGYFRVGRIKNCFELWELMGRKGSRNVASFNIMMRGLFDNGEVDQVISIWE 83
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGF-RHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ +N GF D TY L+ G ++ +SL V E+ +LD +++A
Sbjct: 84 LMIEN-------GFGEDSITYGILVDGLCKNGYANKSLH--VLEIAEGKGGVLDAFSYSA 134
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
M++ L + A+ + +VK C P H+Y ++++ ++
Sbjct: 135 MINGLCKEAKLD----EAVSVLSGMVKNGCK-----PNTHVYNALINGFVGASKFEDATR 185
Query: 195 PYRRM 199
+R M
Sbjct: 186 VFREM 190
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
K NT V NA+I A + ++A ++ + P+ ++YN LI+ K ++
Sbjct: 161 KPNTHVYNALINGFVGASKFEDATRVFREMGTHCSPNIVTYNTLINGLCKGERFGEAYDL 220
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+++ + G K P + TY+ L+ G
Sbjct: 221 VKEMLEKGWK-------PGVSTYSLLMKGL 243
>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 376
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V NA++ +I + +++ E + S+NI++ K+D + E
Sbjct: 24 DAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWE 83
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+K++ GF D TY L+ GF + L V EM +LD ++AM
Sbjct: 84 LMKES-------GFVEDSITYGILVHGFCKNGYIDKSLH-VLEMAEQKGGVLDAFAYSAM 135
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
++ L ++ AL + ++K C P H+Y ++++ LA ++
Sbjct: 136 INGLCKEANLD----RALSVLNGMIKSGCK-----PNVHVYNTLINGLAGASKFEDAIRV 186
Query: 196 YRRM 199
+R M
Sbjct: 187 FREM 190
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 2 FEENEIVNRE----HWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
FE+ V RE H I N +I + + EAY ++ E ++KGL+P ++Y++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
L+ K++ + Q+ S GF PD+ + L+ G +Q L +
Sbjct: 240 LMKGLCLDHKVERALQLWNQV-------ISKGFKPDVQMHNILIHGLCSVGKMQLALSLY 292
Query: 117 FEM 119
F+M
Sbjct: 293 FDM 295
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 25/225 (11%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQL 77
+N +I + R A+ +L + K GL+PD+ ++ LI C++ K D F++ +
Sbjct: 105 LNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMI 164
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
+ GF P++ TY TL+ G + + + ++ M+ N D +T+++D
Sbjct: 165 GE--------GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ-GNCQPDVVVYTSIID 215
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYR 197
+L + A +F ++V + G+ P Y S++H L ++ V +
Sbjct: 216 SLCKDRQVT----EAFNLFSKMVGQ-----GISPDIFTYTSLIHSLCNLCEWKHVTTLLN 266
Query: 198 RMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
+M I P+V + +++A +G++ A D + I R
Sbjct: 267 QMI---NSKIMPDVVIFS--TVVDALCKEGKITEAHDVVDMMIIR 306
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
N + NA+++ +DEA ++ ++ V G P+ +SYN LI+ K +++D T F
Sbjct: 311 NVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLF 370
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E + P+ TY TL+ G H LQ + + EM + I D +T+
Sbjct: 371 EEMCQKE--------LIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVA-HGQIPDLATYR 421
Query: 134 AMVDAL 139
++D L
Sbjct: 422 ILLDYL 427
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 83/160 (51%), Gaps = 20/160 (12%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CI 62
N+++N + + ++ + V++A + +I EA+ +++ + +G+EP+ ++YN L+ C+
Sbjct: 266 NQMINSKIMP-DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCL 324
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+++ + F+ + + G+ P++ +Y TL+ G+ + + + EM
Sbjct: 325 QSEMDEAVKVFDTMVHN--------GYAPNVISYNTLINGYCKIQRMDKATYLFEEM--- 373
Query: 123 CN--LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
C LI + T+ ++ L + G ++ A+ +F E+V
Sbjct: 374 CQKELIPNTVTYNTLMHGLCHVGRLQ----DAIALFHEMV 409
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N ++ R+ +A + E V G PD +Y IL+ K LD M
Sbjct: 381 NTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALL 440
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ ++ PDI Y ++ G A +L++ +I F S L + T+T
Sbjct: 441 KTIE-------GSNMDPDIQIYTIVIDGMCRAGELEAARDI-FSNLSSKGLRPNVRTYTI 492
Query: 135 MVDALLYSG 143
M++ L G
Sbjct: 493 MINGLCRRG 501
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD-VTMPFNEQLK 78
N +I + A R+D A +I E +E +PD +SYN LI+ K +D M F E
Sbjct: 469 NILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEM-- 526
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NLILDRSTFTAM 135
G +PD+ TY+TL+ F ++ + EM + C NL+ T+ +
Sbjct: 527 ------QEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLV----TYNIL 576
Query: 136 VDALLYSG-SIKVVGLYA 152
+D L SG + + V LYA
Sbjct: 577 LDCLERSGRTAEAVDLYA 594
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68
R + L+ N +++A + Q++D+AY++ E ++ + EPD+ +Y I+I K K D
Sbjct: 216 RCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTD 275
Query: 69 VTMPFNEQLKDNG 81
++ + + + G
Sbjct: 276 ESLALFQAMLEKG 288
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
+FE+ + R H + +T +I + +A + DE+ + ++ +EKG + ++YN +I
Sbjct: 245 VFED---MKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIE 301
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
A K + D + ++ +NG C P+ FTY+ LL
Sbjct: 302 ALAKGRMADKAVLLFSKMVENG--C-----QPNEFTYSVLL 335
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAY-QILESVEKGLEPDSLSYNILIS 59
IFEE E N + + I N++I + +DEA+ + E EKGL PD ++Y+ LI
Sbjct: 487 IFEELENSN---CQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIE 543
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
KT K+++ +++ G CS P++ TY LL
Sbjct: 544 CFGKTDKVEMACSLFDEMIAEG--CS-----PNLVTYNILL 577
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 22 AVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
+++E+ + +I EA +L EK + D++ YN + +A + K++ E++K +
Sbjct: 400 SMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQD 459
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G PDIFTY L+ + A + S ++I E+++ N D ++ ++++ L
Sbjct: 460 GPP-------PDIFTYNILISSYGRAGRVDSAVKIFEELEN-SNCQPDVISYNSLINCLG 511
Query: 141 YSGSI 145
+G +
Sbjct: 512 KNGDV 516
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 33/171 (19%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISA 60
FE E + R+ +KL+ N ++ A +A +D+AYQ+ E +++ +PD+ +Y ILI
Sbjct: 203 FEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRM 262
Query: 61 CIKTKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPD 92
K K + E++ G K P+
Sbjct: 263 SGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPN 322
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
FTY+ +L L L EI+ C+ L+R ++ ++ AL SG
Sbjct: 323 QFTYSIMLDVLSTGGQLHRLNEIL----DICSGCLNRPVYSYLIKALCKSG 369
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVT 70
H K + +++EA A++ EA +L + EKG+ D YN++ SA K K++
Sbjct: 385 HEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFM 444
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--SCCNLILD 128
+ ++ N G PD+FTY ++ F + E+ EM+ SC D
Sbjct: 445 SSLYDTMRAN-------GVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKP---D 494
Query: 129 RSTFTAMVDALLYSGSI 145
T+ +M++ L +G +
Sbjct: 495 VVTYNSMINCLGKNGDL 511
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N +I + +D+A ++ E +E G +PD ++YN +I+ K LD +
Sbjct: 459 DVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEA---H 515
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
KD +K G+ PD+FTY+ L+ F + + + EM + C I+ T+
Sbjct: 516 MLFKDMQEK----GYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIV---TY 568
Query: 133 TAMVDALLYSG 143
++D L G
Sbjct: 569 NILLDCLERRG 579
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE E K + + N++I + +DEA+ + + + EKG +PD +Y+ILI
Sbjct: 482 LFEEME---DGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIE 538
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K+ K+D+ +++ + G P+I TY LL
Sbjct: 539 CFGKSNKVDMACSLFDEM-------VAQGCIPNIVTYNILL 572
>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 376
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V NA++ +I + +++ E + S+NI++ K+D + E
Sbjct: 24 DAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWE 83
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+K++ GF D TY L+ GF + L V EM +LD ++AM
Sbjct: 84 LMKES-------GFVEDSITYGILVHGFCKNGYIDKSLH-VLEMAEQKGGVLDAFAYSAM 135
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
++ L ++ AL + ++K C P H+Y ++++ LA ++
Sbjct: 136 INGLCKEANLD----RALSVLNGMIKSGCK-----PNVHVYNTLINGLAGASKFEDAIRV 186
Query: 196 YRRM 199
+R M
Sbjct: 187 FREM 190
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 2 FEENEIVNRE----HWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
FE+ V RE H I N +I + + EAY ++ E ++KGL+P ++Y++
Sbjct: 180 FEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
L+ K++ + Q+ +S GF PD+ + L+ G +Q L +
Sbjct: 240 LMKGLCLDHKVERALQLWNQV-------TSKGFKPDVQMHNILIHGLCSVGKMQLALSLY 292
Query: 117 FEM 119
F+M
Sbjct: 293 FDM 295
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD-VTM 71
K N +V +++ + + EA+ IL E + G++P+ + Y+ LI K +L +
Sbjct: 347 KPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASK 406
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
NE +K G PD FTY L+ G D E++ EM++ ++ + T
Sbjct: 407 LLNEMIKV--------GHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRN-SGILPNAYT 457
Query: 132 FTAMVDALLYSGSIKVVG 149
+ M++ L +G K G
Sbjct: 458 YGIMINGLCQNGESKEAG 475
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N++I+ RI+EA + V+K GL PD +Y+ LI KT+ L+ +Q+ +
Sbjct: 529 NSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLN 588
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G K P+ TY LL G+ + D + + I+ M + D + ++ L
Sbjct: 589 SGLK-------PNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKP-DNHIYGIVIRNL 640
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
S +++V A + E+ K GL P H+Y S++ L D +
Sbjct: 641 SRSENMEV----AFMVLTEVEKN-----GLVPDLHIYSSLISGLCKMADME 682
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
+E + + NA+I+ + I A + +S+ KGL P+ ++Y LI K D
Sbjct: 693 KEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDG--NCKNGD 750
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+T F + KD + G PD F Y L G A DL+ L + EM
Sbjct: 751 ITDAF-DLYKDMLDR----GIAPDAFVYNVLATGCSDAADLEQALFLTEEM 796
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + + VI ++ ++ A+ +L VEK GL PD Y+ LIS K ++ +
Sbjct: 627 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVG 686
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++ + G P I Y L+ GF + D+ S VF+ L+ + T+
Sbjct: 687 LLDEM-------AKEGLEPGIVCYNALIDGFCRSGDI-SRARNVFDSILAKGLLPNCVTY 738
Query: 133 TAMVDALLYSGSI 145
TA++D +G I
Sbjct: 739 TALIDGNCKNGDI 751
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 23/226 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T V++ +++ ++ + A Q+ L + GL P N L+ ++ +++
Sbjct: 175 TAVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKG 234
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ G PD++TY+T L A+D + ++ EM+ + ++ T+ M
Sbjct: 235 FME-------GAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRR-RDCAMNEVTYNVM 286
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+ L SG+++ FG K + GL P Y ++M+ L K+
Sbjct: 287 ISGLCRSGAVEEA-------FG--FKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKAL 337
Query: 196 YRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241
M S + P V A L++ + +G+ A D L+ I+
Sbjct: 338 LDEM---SCSGLKPNVVVYA--TLVDGFMKEGKAAEAFDILNEMIS 378
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I+ + + I +A+ + + +++G+ PD+ YN+L + C L+ +
Sbjct: 734 NCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLT 793
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
E++ + G + + ++TL+ GF LQ
Sbjct: 794 EEMFNRG--------YAHVSLFSTLVRGFCKRGRLQ 821
>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 418
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E + KGL P+ +++ LI K ++D+ M +
Sbjct: 210 SVLINGLCKESK----MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ ++ EM S L D+ T+T +
Sbjct: 266 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM-SVKGLKPDKITYTTL 317
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 318 IDGCCKEGDL 327
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 299
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ S G PD TY TL+ G DL S E M N+ LD +TA
Sbjct: 300 DEM-------SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ-ENIRLDEVAYTA 351
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+ L G + E + R + GL P Y +++E + D
Sbjct: 352 LXSGLCQEGR---------SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 396
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G P
Sbjct: 152 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQP 204
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDLA--- 260
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 261 -----MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 291
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
E + N NA+I A +A ++D+ ++ E V KG E ++Y+ LISAC K + ++
Sbjct: 344 EGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWEL 403
Query: 70 TMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
+ FNE + G P+ TY +L+ + E VFE D
Sbjct: 404 ALELFNEMAGE--------GCIPNTVTYNSLITACAQGAQWEKASE-VFEQMQKGGCTPD 454
Query: 129 RSTFTAMVDALLYSGSI-KVVGLY 151
TFTA++ + G + +G Y
Sbjct: 455 VVTFTALISSYEKGGQWRRALGAY 478
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ + ++ ++L ++ +G+EP +YN LI AC + M
Sbjct: 279 NVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVY 338
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+++ D G+ P+ TY L+ + A L ++E+ EM K C ++ T+
Sbjct: 339 KRMLDE-------GYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVI---TY 388
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++++ A +G ++ AL +F E+ C P Y S++ A ++
Sbjct: 389 SSLISACEKAGQWEL----ALELFNEMAGEGCI-----PNTVTYNSLITACAQGAQWEKA 439
Query: 193 KSPYRRMWPDSTGTISPEV 211
+ +M G +P+V
Sbjct: 440 SEVFEQM---QKGGCTPDV 455
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 15/163 (9%)
Query: 6 EIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISAC 61
E+VNR + + I N ++ + + +E +I +++ EKG P+ ++YN +I +
Sbjct: 561 ELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESL 620
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+KK++ + ++K S G PD+ ++ TL+ GF DL + M+
Sbjct: 621 CNSKKVNEAVDLLGEMK-------SKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEK 673
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
++ +T+ ++ A ++K+ AL +F E+ K C
Sbjct: 674 QYDVSHTTATYNIIISAFSEQLNMKM----ALRLFSEMKKNGC 712
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTK 65
V+RE + + + N VI R+ EA + L V G EP+ +YN +I C K
Sbjct: 356 VSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGM 415
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+D N LKD K GF PD FTY +L+ GF D + VF+ L
Sbjct: 416 VVDA----NRILKDAVFK----GFKPDEFTYCSLVNGFCQDGDPDQAMA-VFKDGLGKGL 466
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170
+ ++ L G I L AL + E+ ++ C P +W
Sbjct: 467 RPSIIVYNTLIKGLCQQGLI----LPALQLMNEMAEKGCK-PDIW 506
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ ++D A +++ + +G+ PD ++YN L++ KT K + M + + +
Sbjct: 544 NTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTE 603
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G C+ P+I TY T++ ++K + ++++ EMKS L D +F ++
Sbjct: 604 KG--CA-----PNIITYNTIIESLCNSKKVNEAVDLLGEMKS-KGLTPDVVSFGTLITGF 655
Query: 140 LYSGSIKVVGLYAL 153
G + G Y L
Sbjct: 656 CKVGDLD--GAYGL 667
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
IV N +I+ + I A Q++ E EKG +PD +YN++I+ K L N
Sbjct: 471 IVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDA---NHL 527
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ D K G PDIFTY TL+ G+ L S +E+V M
Sbjct: 528 IGDAITK----GCIPDIFTYNTLVDGYCRQLKLDSAIELVNRM 566
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 34 DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
D + I +++ KG PD +YN L+ + KLD + ++ S G PD+
Sbjct: 523 DANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRM-------WSQGMTPDV 575
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
TY TLL G + ++EI M K C I+ T+ ++++L S +
Sbjct: 576 ITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNII---TYNTIIESLCNSKKVN----E 628
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
A+ + GE+ + GL P + +++ D D +R M
Sbjct: 629 AVDLLGEM-----KSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGM 671
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 30/133 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD------ 68
N I N +IE+ +++++EA +L E KGL PD +S+ LI+ K LD
Sbjct: 609 NIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLF 668
Query: 69 ------------------VTMPFNEQLKDN-----GQKCSSGGFHPDIFTYATLLMGFRH 105
+ F+EQL + G PD +TY L+ GF
Sbjct: 669 RGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCK 728
Query: 106 AKDLQSLLEIVFE 118
++ + + E
Sbjct: 729 TGNVNQGYKFLLE 741
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 21 NAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA++ E ++A+++ + +K +E D +Y I I + +T + + +
Sbjct: 194 NAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPV 253
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G C S + Y T++ GF D E+ EM CC L D +TF +V AL
Sbjct: 254 LG--CFS-----NAVAYCTVVTGFYEFGDNDRARELFDEMLECC-LCPDVTTFNKLVHAL 305
Query: 140 LYSGSIKVVGLYALCIFGEIVKR-VCSN 166
G + L + +F +++KR VC N
Sbjct: 306 CKKGFV----LESERLFDKVLKRGVCPN 329
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A++I E + K GL+PD YN+LI A K +D + E+++ + S+ F P
Sbjct: 506 AFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRP--- 562
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMK--SCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
++ GF A D++ L+I+ M+ C ++ T+ A++ L+ ++ A
Sbjct: 563 ----IIEGFAVAGDMKRALDILDLMRRSGCAPTVM---TYNALIHGLIRKNQVE----RA 611
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+ + ++ S G+ P H Y +M AA D
Sbjct: 612 VSVLNKM-----SIAGITPNEHTYTIIMRGYAATGD 642
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT V N +I+ + EA +++ + E G+ P+ +Y I+AC K +
Sbjct: 696 NTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVI 755
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ D G K P++ TY TL+ G+ A L+ EMK L D + +
Sbjct: 756 DEMSDVGLK-------PNLKTYTTLIKGWARASLPDRALKCFEEMK-LAGLKPDEAAYHC 807
Query: 135 MVDALLYSGSI----KVVGLYALC 154
+V +LL ++ G+ ++C
Sbjct: 808 LVTSLLSRATVMEGSTYTGILSVC 831
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ ++ R++EA Q+LE+ V++ + P+ ++YN LI KT +
Sbjct: 207 DVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLI 266
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CC-NLILDRST 131
E++ +G HPD+ T+ +L+ GF + E++ MK C NL+
Sbjct: 267 ERMIQSGT-------HPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVL 319
Query: 132 FTAMVDA 138
+ + DA
Sbjct: 320 ISGLCDA 326
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N++I +I++A+QI VE+G+ PD +SY L A +K+++ D
Sbjct: 347 DIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALL 406
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-CNLILDRSTFT 133
+ + D G P++FT+ +L+ G ++ L ++ M+ C+ ST+
Sbjct: 407 DNMFDAGAI-------PNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAA--STYE 457
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
+V L +G + + + E ++ + S+ G +++H LA D+
Sbjct: 458 VLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSG---------TIVHTLAREGKQDLAL 508
Query: 194 SPYRRMWPDSTGTISPEVQE 213
+ ++ + P Q+
Sbjct: 509 HYFDQVVAAESKACDPSYQK 528
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDV 69
+H N I N +I +A ++ A+Q+L E E+G PD ++++ ++ A T L
Sbjct: 99 QHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSR 158
Query: 70 TMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
M F E + +C+ PD + L+ G A L +++ EM ++ D
Sbjct: 159 AMQYFRESV-----ECA-----PDSVLFNILVHGLCKANQLSEARQMIEEMSE-RGIVPD 207
Query: 129 RSTFTAMVDALLYS 142
T+ +++D L S
Sbjct: 208 VVTYNSLIDGLCKS 221
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 45 KGLEPDSLSYNILISACIKTKKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+G++ D ++YN L+SAC + D M F + + GG PDI TY+ L+ F
Sbjct: 246 EGIQADIVTYNTLLSACARRGLGDEAEMVF--------RTMNEGGILPDITTYSYLVETF 297
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
L+ + E++ EM+S + D +++ +++A SGSIK A+ +F R
Sbjct: 298 GKLNRLEKVSELLKEMESGGSFP-DITSYNVLLEAHAQSGSIK----EAMGVF-----RQ 347
Query: 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST 204
G P Y +++ YD V+ + M +T
Sbjct: 348 MQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNT 388
>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Glycine max]
Length = 507
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 21/212 (9%)
Query: 23 VIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
++E + Q + + ++ +E KG + D ++Y I+++A K KK D + ++K G
Sbjct: 230 LLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEMKARG 289
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
+ P Y TL+ G K L LE FE+ + + T+ A+V A Y
Sbjct: 290 VR-------PSPHVYCTLINGLGSDKRLDEALEF-FEVSKASGFVPEAPTYNAVVGA--Y 339
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP 201
S+++ Y + GE+ K C G+ P + ++H L + S +RRM
Sbjct: 340 CWSLRMDDAYRMV--GEMKK--C---GIGPNSRTFDIVLHHLIKGRRIEEASSVFRRM-- 390
Query: 202 DSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+ G E +++ N+ +D+A+
Sbjct: 391 -NGGEFGCEPSVSTYEIMVRMFCNEELLDMAV 421
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 35 EAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
EA + E +E GL+P +N L+ K+K + E+ + K PDI
Sbjct: 172 EAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSV-------EEAHEVFDKMRKLRLDPDI 224
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI-KVVGLYA 152
+Y LL G+ ++L + E+ EM+ LD + +++A + + +GLY
Sbjct: 225 KSYTILLEGWSQQQNLIKVNEVCREMED-KGFQLDVVAYGIIMNAHCKAKKFDEAIGLY- 282
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
E+ R G+ P PH+Y ++++ L +
Sbjct: 283 ----HEMKAR-----GVRPSPHVYCTLINGLGS 306
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA 60
F ++ E + +A+I + R++EA + E E GL P+ +++ LI
Sbjct: 281 FVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDG 340
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K K+D+ + E +KD G + PD+ TY L+ G DL+ +++ EM
Sbjct: 341 QCKHGKIDLALRNFEIMKDRGIR-------PDLITYNALINGLCRDGDLKEARKLLNEMI 393
Query: 121 SCCNLILDRSTFTAMVDALLYSGSI 145
D+ TFT ++D G +
Sbjct: 394 G-NGFKPDKITFTTLMDGCCKDGDM 417
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 31/224 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N ++ + + A + + + +GL P +S+N LIS ++K ++
Sbjct: 225 NVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLK 284
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRST 131
++ S PD+FTY+ L+ G ++ L + + EM L+ + T
Sbjct: 285 SVME-------SERISPDVFTYSALINGLCKESRVEEANGLFDEMCEM----GLVPNGVT 333
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
FT ++D G I + AL F EI+K + G+ P Y ++++ L D D+
Sbjct: 334 FTTLIDGQCKHGKIDL----ALRNF-EIMK----DRGIRPDLITYNALINGLCR--DGDL 382
Query: 192 VKSPYRRMWPDSTGT-ISPEVQEEAGHLLMEAALNDGQVDLALD 234
++ R++ + G P+ + LM+ DG +D AL+
Sbjct: 383 KEA--RKLLNEMIGNGFKPD--KITFTTLMDGCCKDGDMDSALE 422
>gi|224148148|ref|XP_002336601.1| predicted protein [Populus trichocarpa]
gi|222836288|gb|EEE74709.1| predicted protein [Populus trichocarpa]
Length = 223
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N+ I ++ D+++ ++S GL PD+L+Y L+ AC + LD+ + +
Sbjct: 77 NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAH 136
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ + GF D++ +L+ + D++S VF SC LD ++T+
Sbjct: 137 GQIIRH-------GFDSDVYVQNSLVTMYSTLGDIKS-ASYVFRRISC----LDVVSWTS 184
Query: 135 MVDALLYSGSI 145
MV + SG +
Sbjct: 185 MVAGYIKSGDV 195
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +V N +I+ + R+ +A I + +E G+ S++YN LI+ K+K+++
Sbjct: 476 NVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLM 535
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRSTFT 133
+Q+ G K PD FTY T+L F D++ +IV M + C D T+
Sbjct: 536 DQMIMEGLK-------PDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCE--PDIVTYG 586
Query: 134 AMVDALLYSGSIKV 147
++ L +G + V
Sbjct: 587 TLIGGLCKAGRVDV 600
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++L+ N++I + IDEA +IL V + EP++++YN LI K ++
Sbjct: 333 FELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAAT 392
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRS 130
L +S G PD+ T+ +L+ G + + +E+ EMK C+ D
Sbjct: 393 ELARVL-------TSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCD--PDEF 443
Query: 131 TFTAMVDALLYSGSIK 146
T++ ++++L +K
Sbjct: 444 TYSILIESLCSERRLK 459
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I + ++ A ++ + KG+ PD ++N LI T ++ M
Sbjct: 371 NTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELF 430
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
E++K+ G C PD FTY+ L+ + L+ L ++ EM+
Sbjct: 431 EEMKEKG--CD-----PDEFTYSILIESLCSERRLKEALMLLKEME 469
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
E++ +L ++ +N ++ + RI+EA + + E+G PD +++N L++ +T
Sbjct: 258 ELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE-EEGFCPDQVTFNALVNGLCRTG 316
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + + + + G F D++TY +L+ G ++ +EI+ M S
Sbjct: 317 HIKQGLEMMDFMLEKG-------FELDVYTYNSLISGLCKLGEIDEAVEILHHMVS 365
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + N +++ +A R+ EA Q+LE ++ G PD ++Y+ + K+ K+
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQ 243
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
EQ++D+ P++ TY T+L G + + + LE++ +M S L+ +
Sbjct: 244 VLEQMRDSHH-------DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296
Query: 133 TAMVDALLYSGSIK 146
+ +VD L G +
Sbjct: 297 STVVDGLCKLGRTQ 310
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+ G P +++N LIS C + K L++ QK ++ G D+ TY TL+ G
Sbjct: 144 IRAGCCPTLITFNTLISGCCREKNLEMADSLL-------QKMAASGVKADVVTYNTLMDG 196
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
A LQ +++ MK+ D +++ V L SG +
Sbjct: 197 LCKAGRLQEAEQLLERMKA-SGCAPDVVAYSSFVYGLCKSGKV 238
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66
++R N++ NA++ + R + ++LE++ + ++P+ +SYN L+ K ++
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ G G PD+ TY+TLL G+ A ++ E++ E+ S
Sbjct: 61 WHEAEELVRDMISRG-----GRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVIS 110
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 17/192 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R K TI ++ A+R DEA +L E PD++SYN +I + +
Sbjct: 152 RAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRS 211
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ +++ G +CS PD+ ++ T++ GF ++ + EM ++
Sbjct: 212 QEALDMVQRMAKEGGRCS-----PDVVSFNTVIHGFFKQGEVSKACNLFNEMVQ-KGVVP 265
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187
D T+ ++VDAL + ++ E V R + G+ P Y +++H +
Sbjct: 266 DVGTYNSIVDALCKARAMDK---------AEFVLRQMVDKGVEPDGVTYNAIIHGYSCSG 316
Query: 188 DYDIVKSPYRRM 199
+ +R+M
Sbjct: 317 HWKESAKMFRKM 328
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N VI + + +A + E V+KG+ PD +YN ++ A K + +D
Sbjct: 231 DVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVL 290
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ D G PD TY ++ G+ + + ++ +M S LI D TF++
Sbjct: 291 RQMVDK-------GVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTS-KGLIPDTVTFSS 342
Query: 135 MVDALLYSGSIK 146
+ +L G K
Sbjct: 343 FMSSLCKHGRSK 354
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 25/226 (11%)
Query: 19 VMNAVIEAS-REAQRIDEAYQILESVEKGLEPDSLSYNILIS-ACIKTKKLDVTMPFNEQ 76
+ N +I+A + I+ A + +E G EPD +YN LI+ +C K K + E+
Sbjct: 309 IFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREA-----EE 363
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
L ++ + G P+ F+Y L+ F + E++ EM + LD + A+V
Sbjct: 364 LLEHAIR---RGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGH-TLDLIAYGALV 419
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
L+ +G + V AL + ++++R G+ P ++Y +M L + + K
Sbjct: 420 HGLVVAGEVDV----ALTVRDKMMER-----GILPDANIYNVLMSGLCKKGRFPAAKQLL 470
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
M + ++P+ A L++ + G +D A TI R
Sbjct: 471 VEMLDQN---VTPDAFVNA--TLVDGFIRHGNLDEAKKLFQLTIER 511
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E + KGL P+ +++ LI K ++D+ M +
Sbjct: 216 SVLINGLCKESK----MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ ++ EM S L D+ T+T +
Sbjct: 272 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM-SVKGLKPDKITYTTL 323
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 324 IDGCCKEGDL 333
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 305
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ S G PD TY TL+ G DL S E M N+ LD +TA
Sbjct: 306 DEM-------SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ-ENIRLDEVAYTA 357
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 358 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +SYN L++ I+ LD + + G PD++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQPDVY 213
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDLA------ 266
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 267 --MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 297
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 80/204 (39%), Gaps = 27/204 (13%)
Query: 3 EENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILI 58
E NE++N N + +I+ + ++D A +I + + +G PD ++YN LI
Sbjct: 224 EANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLI 283
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ L Q +D ++ G PD TY TL+ G D LEI FE
Sbjct: 284 YGLCRRGDLG-------QARDLVEEMIMKGLKPDKITYTTLIDGSCKEGD----LEITFE 332
Query: 119 MKSCC---NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175
++ N+ LD T+TA++ L G E + R GL P
Sbjct: 333 LRKRMIRENIRLDEVTYTALISGLCREGRAGD---------AEKMLREMLTVGLKPDNGT 383
Query: 176 YVSMMHELAARVDYDIVKSPYRRM 199
Y +M+E D R M
Sbjct: 384 YTMIMNEFCKTGDVKTASKLLREM 407
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 32/167 (19%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ +DE +++ ++ G++PD +Y++LI+ K K+D
Sbjct: 165 WSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDE 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
++ DNG C +G GF PD+ TY TL+
Sbjct: 225 ANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
G DL ++V EM L D+ T+T ++D G +++
Sbjct: 285 GLCRRGDLGQARDLVEEM-IMKGLKPDKITYTTLIDGSCKEGDLEIT 330
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 58/244 (23%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ + +DE +++ ++ G++PD +Y++LI+ K ++D
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDE 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
++ DNG C +G GF PD+ TY TL+
Sbjct: 225 ANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG------------ 149
G DL+ ++ EM S L D+ T+T ++D G ++
Sbjct: 285 GLCKKGDLKQARYLLDEM-SRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIR 343
Query: 150 ----LYALCIFG----------EIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+Y IFG E + R GL P Y +M+E + D
Sbjct: 344 LDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASEL 403
Query: 196 YRRM 199
R M
Sbjct: 404 LREM 407
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +S+N L++ IK LD ++ + G PD++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMR-------ASGVQPDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + + EM L+ + TFT ++D +G + + A+
Sbjct: 208 TYSVLINGLCKESRMDEANGLFGEMLD-NGLVPNGVTFTTLIDGHCKNGRLDL----AMD 262
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
I+ +++ N G P Y ++++ L + D
Sbjct: 263 IYRQML-----NQGFSPDVVTYNTLIYGLCKKGD 291
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+++ R K N I + +I+ A ++DEA ++L S+ G++PD ++YN LI+ +
Sbjct: 500 DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
++D + +++ S G P+I TY +L G H +
Sbjct: 560 SRMDDALALFKEM-------VSSGVSPNIITYNIILQGLFHTR 595
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA-CIKTKKLDVTMP 72
LNTI N++I + + R+ E+ ++ + V G++P+ ++Y+ LI C+ K + T
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKL 533
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ S G PD TY TL+ G+ + L + EM S
Sbjct: 534 LSSMF--------SVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVS 574
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N +I A + +++DEA + + + GL P+ ++Y +I K+ +D M + EQ+
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432
Query: 78 KDNGQKCSSGGFHPDIFTYATLL 100
D G P+I Y +L+
Sbjct: 433 IDE-------GLTPNIIVYTSLI 448
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 34 DEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D+AY E +++ + PD ++Y+ +I+A K + +D M + N G P+
Sbjct: 213 DKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKN-------GVMPN 265
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
TY ++L G+ ++ + + + +M+S + D T+ +++D L +G A
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRS-DGVEPDVVTYNSLMDYLCKNGR----STEA 320
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
IF + KR GL P Y +++ A +
Sbjct: 321 RKIFDSMTKR-----GLEPDIATYCTLLQGYATK 349
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA 60
FE E++ H +LN +I + RID+A+Q+ E + + G+ PD Y++LI
Sbjct: 268 FELIEMLEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGG 327
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
K K L++ + ++K + G PD LL F +L + +++
Sbjct: 328 LCKHKDLEMALSLYLEIKRS-------GIPPDRGILGKLLCSFSEESELSRITKVI 376
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I + +I+A +A R EA + E V KGL+P +YN +I K ++D +
Sbjct: 613 DVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCI 672
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ ++ + +PD+ TY +L+ G ++ + EMK + +R TF A
Sbjct: 673 VRMYEDEK-------NPDVITYTSLIHGLCASRRPSEAISRWNEMKG-KDCYPNRITFMA 724
Query: 135 MVDALLYSG 143
++ L G
Sbjct: 725 LIQGLCNCG 733
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
NEI++R W I V+ + Q +D+A++++E +E + + + ++ +LI +K
Sbjct: 238 NEILSR-GWLDEHISTILVVSFCKWGQ-VDKAFELIEMLEERHIRLNYKTFCVLIHGFVK 295
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++D E+++ G +PDI Y L+ G KDL+ L + E+K
Sbjct: 296 ESRIDKAFQLFEKMR-------RMGMNPDIALYDVLIGGLCKHKDLEMALSLYLEIK 345
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NTI+ A+ E+ A + ++ ++ E G+ P S +Y+ILI KT +++ M E
Sbjct: 341 NTII-KALFESKSRASEVPSWFERMK--ESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 397
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ + GF P Y +L+ AK E+ E+K C R + M
Sbjct: 398 EMDEK-------GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSAR-VYAVM 449
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+ L +G + A+ +F E+ K C+ P + Y ++M LA D S
Sbjct: 450 IKHLGKAGRLDD----AINMFDEMNKLGCA-----PDVYAYNALMSGLARTGMLDEALST 500
Query: 196 YRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238
RRM G I P++ + ++++ G A++ LSN
Sbjct: 501 MRRM--QEHGCI-PDIN--SYNIILNGLAKTGGPHRAMEMLSN 538
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
NE+ H +T+ +A+I A + R D A Q+L E E G++P + Y +LI+ K
Sbjct: 185 NEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFK 244
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ E+++ Q C PD+FTY L+ G A + EM+
Sbjct: 245 FNDAHGALSLFEEMRH--QYC-----RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 294
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE + ++ + + +I +A RIDEAY E +G PD++ N +I+
Sbjct: 254 LFEE---MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMIN 310
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +LD M ++++ +C P + TY T++ +K S + FE
Sbjct: 311 FLGKAGRLDDAMKLFQEMET--LRCI-----PSVVTYNTIIKALFESKSRASEVPSWFER 363
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
+ T++ ++D + ++ A+ + E+ ++ G P P Y S+
Sbjct: 364 MKESGISPSSFTYSILIDGFCKTNRME----KAMMLLEEMDEK-----GFPPCPAAYCSL 414
Query: 180 MHELAARVDYDIV 192
+ L YD+
Sbjct: 415 IDALGKAKRYDLA 427
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 30/150 (20%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V +I+ +A R+D+A + + + K G PD +YN L+S +T LD + ++
Sbjct: 445 VYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRM 504
Query: 78 KDNG-------------QKCSSGGFH---------------PDIFTYATLLMGFRHAKDL 109
+++G +GG H PD+ +Y T+L HA
Sbjct: 505 QEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMF 564
Query: 110 QSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ +++ EM + D T++++++A+
Sbjct: 565 EEASKLMKEMNT-LGFEYDLITYSSILEAI 593
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+A + ++DEA + + +E +G+ P+S+++N +I+ K K DV F E++
Sbjct: 409 NVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKM-- 466
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G PD +TY+ + K + L + EM
Sbjct: 467 -----VSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEM 501
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ AV+ A R+ A ++ ES++ KG EP+ +YN ++ K+ M +Q
Sbjct: 301 VTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQ 360
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+++ C G PD+ TY L+ G ++S ++ M+ L D+ T+ ++
Sbjct: 361 MRE----C---GVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEG-NGLAADQYTYNVLI 412
Query: 137 DALLYSGSI 145
DAL +G +
Sbjct: 413 DALCKTGKV 421
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68
R W+ + N++I Q++D A + + + +G D++SY LI +T ++D
Sbjct: 157 RSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVD 216
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ +L+ PD++T+A L+ G A+ + L ++ +MK
Sbjct: 217 EALELFRELE-----------QPDMYTHAALVKGLCDARRGEEGLYMLQKMK 257
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I A + A + L V G PD+ ++N LI +T++LDV +D
Sbjct: 133 NALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVA-------QD 185
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
K GF D +YA L+ GF + LE+ E++ D T A+V L
Sbjct: 186 LFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ-----PDMYTHAALVKGL 240
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 30/152 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N VI + + D A LE V G PD+ +Y+ I KTK + F
Sbjct: 439 NSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFI 498
Query: 75 EQLKDNGQKCS----------------------------SGGFHPDIFTYATLLMGFRHA 106
+++ K S S G PD+ TY T + + +
Sbjct: 499 DEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNE 558
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
L +V EMK +I+D + ++D
Sbjct: 559 GRLHEAENVVMEMKK-GGIIVDAMAYNTLIDG 589
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NTI+ A+ E+ A + ++ ++ E G+ P S +Y+ILI KT +++ M E
Sbjct: 374 NTII-KALFESKSRASEVPSWFERMK--ESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 430
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ + GF P Y +L+ AK E+ E+K C R + M
Sbjct: 431 EMDEK-------GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSR-VYAVM 482
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+ L +G + A+ +F E+ K C+ P + Y ++M LA D S
Sbjct: 483 IKHLGKAGRLDD----AINMFDEMNKLGCA-----PDVYAYNALMSGLARTGMLDEALST 533
Query: 196 YRRM 199
RRM
Sbjct: 534 MRRM 537
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
NE+ H +T+ +A+I A + R D A Q+L E + G++P + Y +L++ K
Sbjct: 218 NEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFK 277
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ + E+++ Q C PD+FTY L+ G A + +EM+
Sbjct: 278 LNDVHGALSLFEEMRH--QYC-----RPDVFTYTELIRGLGKAGRIDEAYHFFYEMQ 327
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 20/192 (10%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+FEE + ++ + + +I +A RIDEAY +++ G PD++ N +I+
Sbjct: 287 LFEE---MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMIN 343
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K +LD M +++ +C P + TY T++ +K S + FE
Sbjct: 344 FLGKAGRLDDAMKLFQEM--GTLRCI-----PSVVTYNTIIKALFESKSRASEVPSWFER 396
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
+ T++ ++D + ++ A+ + E+ ++ G P P Y S+
Sbjct: 397 MKESGISPSSFTYSILIDGFCKTNRME----KAMMLLEEMDEK-----GFPPCPAAYCSL 447
Query: 180 MHELAARVDYDI 191
+ L YD+
Sbjct: 448 IDALGKAKRYDL 459
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V +I+ +A R+D+A + + + K G PD +YN L+S +T LD + ++
Sbjct: 478 VYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRM 537
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109
+++G C PDI +Y +L G + +DL
Sbjct: 538 QEHG--CI-----PDINSYNIILNGLQKQEDL 562
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 29 EAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
+ +++ E Y + S E PD+++Y+ LISA K + D + ++KDNG +
Sbjct: 209 QYEKVHELYNEM-STEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQ----- 262
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRSTFTAMVDALLYSGSI 145
P Y L+ F D+ L + EM+ C D T+T ++ L +G I
Sbjct: 263 --PTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCR--PDVFTYTELIRGLGKAGRI 316
>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
Length = 410
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ +A ++L+ + +G P +++N+L+ K K+ +PF
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K + GF P TY L+ GF A+D+ + +MK L + T+T
Sbjct: 202 NQMK-------AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKE-RGLEPTKVTYTI 253
Query: 135 MVDAL 139
++D+
Sbjct: 254 LIDSF 258
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA 60
F+ ++ + + K N N ++E + +A+ +L V + GL PD ++YNIL+
Sbjct: 324 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 383
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K +L+ M FN N S G PD FT+ L+ G L+ I+ M
Sbjct: 384 FCKEGQLN--MAFNIFNSMN-----SAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMV 436
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVV 148
+ LD TFTA++D G K V
Sbjct: 437 K-KGISLDEVTFTALIDGHCKIGKAKDV 463
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I NA+I + + A+Q+L +EKG +P+ +YN L+ + K +
Sbjct: 305 ITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 364
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ DN G PD TY L+ GF L I M S L D TFTA++
Sbjct: 365 VVDN-------GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNS-AGLEPDGFTFTALI 416
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKR 162
D L G ++ A I G +VK+
Sbjct: 417 DGLCKLGRLE----QANGILGSMVKK 438
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 20/178 (11%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACI 62
EN + NR +T N ++A + +++EA +L + K GL P +++ ILI
Sbjct: 468 ENMVENRCLTTAHTF--NCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHC 525
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + +++ E++K G CS P+++TY ++ G + ++ I+F M S
Sbjct: 526 RAGETALSLKMLERMKQAG--CS-----PNVYTYTIIINGLCNNGRVEEAETILFSMSS- 577
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+ + T+ +V A + +G + A I +VK C P H+Y +++
Sbjct: 578 FGVSPNHFTYAVLVKAHVKAGRLD----RAFQIVSTMVKNGCQ-----PNSHIYSALL 626
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILIS 59
+FE+ + E + N++ + +I EA R++EA+Q+ E VEKG +P + +Y +LI
Sbjct: 185 VFEK--MSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIK 242
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
A D M +++ ++ P++ TY L+
Sbjct: 243 AKCDIGMTDKAMKMLDEM-------ATKACVPNVHTYTILI 276
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIK 63
+E+V++ H + + N +++ A + EA Q+ + V + +PD++S+NI+I K
Sbjct: 321 DEMVSKGH-DPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSK 379
Query: 64 TKKLDVTMPFNEQL-KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K+LD + E++ +D+G CS PD+ TY +L+ G + L +++ E+
Sbjct: 380 AKRLDDAVEVFERMEQDHG--CS-----PDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR- 431
Query: 123 CNLILDRSTFTAMVDALLYSG 143
L D F +++A+ +G
Sbjct: 432 LKLSPDPHAFNVLLEAMYAAG 452
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I + +I A++ D+A+++ E+ + +G P++++YN L+ K K D
Sbjct: 226 DVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELF 285
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++ + G C PD TY TLL GF + ++ +E+ EM S
Sbjct: 286 RKMVERG--CD-----PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVS 325
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
N + N ++ + + DEA+++ VE+G +PD ++Y L+ K++ + F
Sbjct: 261 NAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVF 320
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
+E + S G PD+ Y LL GF A
Sbjct: 321 DEMV--------SKGHDPDVVAYNCLLKGFFRA 345
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 30/117 (25%)
Query: 21 NAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N+++ + +A+++ +A+ I ++ E+ + PD +SY+ILI K +L +Q+
Sbjct: 125 NSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMI 184
Query: 79 D--------------NG--------------QKCSSGGFHPDIFTYATLLMGFRHAK 107
D NG ++ S G PD+ TY+TL+ GF A+
Sbjct: 185 DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLAR 241
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF----NE 75
++VI+ +A R+D A +LE+ +++G PD ++++LI+ K K+ F N
Sbjct: 53 HSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNR 112
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+ C F+Y +LL AK + I M S +++ D +++ +
Sbjct: 113 TISTRASSC---------FSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSIL 163
Query: 136 VDAL 139
+D
Sbjct: 164 IDGF 167
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT + N +I+ I EA +++ +++ G++PD +Y I+AC K +
Sbjct: 730 NTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTI 789
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++K S G P++ TY TL+ G+ A + L EMK L DR+ +
Sbjct: 790 EEMK-------SVGVKPNVKTYTTLINGWARASLPEKALSCFEEMK-LSGLKPDRAVYHC 841
Query: 135 MVDALLYSGSI 145
++ +LL ++
Sbjct: 842 LMTSLLSRATV 852
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 38/164 (23%)
Query: 36 AYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ I E ++ G++PD + YN +I+A K+D + ++++ K P
Sbjct: 540 AFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHK-------PTTR 592
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
T+ ++ GF +++ L++ D + SG I V Y
Sbjct: 593 TFMPIIHGFARKGEMKKALDV--------------------FDMMRMSGCIPTVHTYNAL 632
Query: 155 IFGEIVKRVCSN----------PGLWPKPHLYVSMMHELAARVD 188
I G + KR G+ P H Y ++MH A+ D
Sbjct: 633 ILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGD 676
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+++ R K N I + +I+ A ++DEA ++L S+ G++PD ++YN LI+ +
Sbjct: 500 DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
++D + +++ S G P+I TY +L G H +
Sbjct: 560 SRMDDALALFKEM-------VSSGVSPNIITYNIILQGLFHTR 595
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA-CIKTKKLDVTMP 72
LNTI N++I + + R+ E+ ++ + V G++P+ ++Y+ LI C+ K + T
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKL 533
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ S G PD TY TL+ G+ + L + EM S
Sbjct: 534 LSSMF--------SVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVS 574
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N +I A + +++DEA + + + GL P+ ++Y +I K+ +D M + EQ+
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432
Query: 78 KDNGQKCSSGGFHPDIFTYATLL 100
D G P+I Y +L+
Sbjct: 433 IDE-------GLTPNIIVYTSLI 448
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 34 DEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D+AY E +++ + PD ++Y+ +I+A K + +D M + N G P+
Sbjct: 213 DKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKN-------GVMPN 265
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
TY ++L G+ ++ + + + +M+S + D T+ +++D L +G A
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRS-DGVEPDVVTYNSLMDYLCKNGR----STEA 320
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
IF + KR GL P Y +++ A +
Sbjct: 321 RKIFDSMTKR-----GLEPDIATYCTLLQGYATK 349
>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ LN V+ AQ++DEA +EK L P+ +++N L+SA K+K +
Sbjct: 125 RKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVR 184
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
E ++D F PD TY+ LL G+ +L E+ EM + C+
Sbjct: 185 KAQEVFENMRDR--------FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCH--P 234
Query: 128 DRSTFTAMVDALLYSGSI 145
D T++ MVD L +G +
Sbjct: 235 DIVTYSIMVDILCKAGRV 252
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
N + N ++ A +++ + +A ++ E++ PDS +Y+IL+ K L
Sbjct: 166 NLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFR 225
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ D G HPDI TY+ ++ A + L IV M
Sbjct: 226 EMID-------AGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 262
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E + KGL P+ +++ LI K ++D+ M +
Sbjct: 216 SVLINGLCKESK----MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ ++ EM S L D+ T+T +
Sbjct: 272 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM-SVKGLKPDKITYTTL 323
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 324 IDGCCKEGDL 333
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 305
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ S G PD TY TL+ G DL S E M N+ LD +TA
Sbjct: 306 DEM-------SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ-ENIRLDEVAYTA 357
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 358 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +++ K GL P +SYN L++ I+ LD + + G PD++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQPDVY 213
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDLA------ 266
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 267 --MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 297
>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NT MN +++A + ++++ A ++ + ++PD+ ++NI + +++D M E
Sbjct: 185 NTETMNVLLDALCKEKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIE 244
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++K + GF P + TY T+L + + + + EI+ M S
Sbjct: 245 EMK-------AQGFPPSVITYTTVLEAYCKQHNFRMVYEILDSMSS 283
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T+ NA+I + + + +++I++ +++GL PD+ + N LISAC + + L E
Sbjct: 599 TVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLE 658
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ K G HPD T+ T + + + E++ EM+S
Sbjct: 659 KFK-------QLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMES 697
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILIS 59
FE + + + + + I NA+I AS +A+ A + + + + GL PD SYN LI
Sbjct: 513 FEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALID 572
Query: 60 ACIKTKKLDVTMPFNEQLKDNG-QKCS---------------------------SGGFHP 91
AC K+ E+++ G + C+ G +P
Sbjct: 573 ACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNP 632
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
D +T TL+ +DL + E++ + K + D TF +DA+
Sbjct: 633 DAYTMNTLISACNRRQDLSTAFEVLEKFKQ-LGVHPDNVTFNTFIDAV 679
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
IFEE + E + NA+I+ + +++D+A++I + + K ++PD +++N LIS
Sbjct: 480 IFEE---MTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALIS 536
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A K K L+ G G PD +Y L+ + D E+ EM
Sbjct: 537 ASGKAKNSI------RALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEM 590
Query: 120 KS 121
++
Sbjct: 591 RT 592
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLD 68
EH + N +A+IE + A + + + P++++YN +I + K+ D
Sbjct: 341 EHIQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRND 400
Query: 69 ---VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+T + L++ K G PD+ TYATL+ F + + L++ EMK N+
Sbjct: 401 CGGITRAMS-LLREMATK----GCIPDVVTYATLIDAFSKRMEPERALKLFQEMKE-ANV 454
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
+ +++++ A +G ++ AL IF E+
Sbjct: 455 KPNNYCYSSLISAFCRAGYVE----RALAIFEEMT 485
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA 60
F+ ++ + + K N N ++E + +A+ +L V + GL PD ++YNIL+
Sbjct: 390 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 449
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K +L+ M FN N S G PD FT+ L+ G L+ I+ M
Sbjct: 450 FCKEGQLN--MAFNIFNSMN-----SAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMV 502
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVV 148
+ LD TFTA++D G K V
Sbjct: 503 K-KGISLDEVTFTALIDGHCKIGKAKDV 529
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I NA+I + + A+Q+L +EKG +P+ +YN L+ + K +
Sbjct: 371 ITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 430
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ DN G PD TY L+ GF L I M S L D TFTA++
Sbjct: 431 VVDN-------GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNS-AGLEPDGFTFTALI 482
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKR 162
D L G ++ A I G +VK+
Sbjct: 483 DGLCKLGRLE----QANGILGSMVKK 504
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 20/178 (11%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACI 62
EN + NR +T N ++A + +++EA +L + K GL P +++ ILI
Sbjct: 534 ENMVENRCLTTAHTF--NCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHC 591
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + +++ E++K G CS P+++TY ++ G + ++ I+F M S
Sbjct: 592 RAGETALSLKMLERMKQAG--CS-----PNVYTYTIIINGLCNNGRVEEAETILFSMSS- 643
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+ + T+ +V A + +G + A I +VK C P H+Y +++
Sbjct: 644 FGVSPNHFTYAVLVKAHVKAGRLD----RAFQIVSTMVKNGCQ-----PNSHIYSALL 692
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILIS 59
+FE+ + E+ + N++ + +I EA R++EA+Q+ E VEKG +P + +Y +LI
Sbjct: 251 VFEK--MSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIK 308
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
A D M +++ ++ P++ TY L+
Sbjct: 309 AKCDIGMTDKAMKMLDEM-------ATKACVPNVHTYTILI 342
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N++I S + +D+A Q+LE + KG+ PD ++YNILI K ++
Sbjct: 625 NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEI------- 677
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E+ K+ G P+ TYA ++ G+ +K+ + +++ EM
Sbjct: 678 ERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 722
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 23 VIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDN 80
++E +A+ +DEA ++ S V+KGL PD +Y+ILI+ C++ + + + E +
Sbjct: 247 LLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMI--- 303
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLIL 127
G P+ TY L+ GF D++ I EM +C NLI+
Sbjct: 304 -----DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII 348
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E V GL+P+++ Y L++A K +++ + E++++ G PD+F Y +L+
Sbjct: 441 EMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG-------ILPDVFCYNSLI 493
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
+GF AK ++ + EM L + T+ A +D +G +++ Y F E++
Sbjct: 494 IGFCKAKRMEEARTYLMEMLE-RRLRPNAHTYGAFIDGYSKAGEMEIADRY----FNEML 548
Query: 161 KRVCSNPGLWPKPHLYVSMMH 181
+ G+ P +Y +++
Sbjct: 549 -----SCGVLPNVGIYTALIE 564
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I+ N ++ +A ++++A +I+ E +EKG+EPDS +Y++LI + + +
Sbjct: 345 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELL 404
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++K P + TY+ ++ G +LQ I+ EM
Sbjct: 405 DEMKKR-------KLAPTVLTYSVIINGLCRCGNLQGTNAILREM 442
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I NA+I+ I++A++I E V G+E + + +N L++ K K++ + ++
Sbjct: 312 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 371
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ + G PD TY+ L+ G +++ E++ EMK L T++ ++
Sbjct: 372 MMEKG-------VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK-RKLAPTVLTYSVII 423
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM--HELAARVD 188
+ L G+++ G A I++ + N GL P +Y ++M H RV+
Sbjct: 424 NGLCRCGNLQ--GTNA------ILREMVMN-GLKPNAVVYTTLMTAHAKEGRVE 468
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 32 RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
++ EA+ I + EKGL P++ +YN LIS K +D E++ C G +
Sbjct: 606 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM------CIK-GIN 658
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
PDI TY L+ G A +++ + +++ L + T+ AMVD
Sbjct: 659 PDIVTYNILIDGLCKAGEIERAKNLFDDIEG-RGLTPNCVTYAAMVDG 705
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+++ +++ A+Q+LE + +G+ PD+ YN++++ C K +K + +
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 754
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS---LLEIVFEMKSCCNLILDRST 131
+++ + G ++ TL+ G+ + LQ LLE + E + I + T
Sbjct: 755 QEMLEKG--------FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQ----FIPNHVT 802
Query: 132 FTAMVD 137
+T+++D
Sbjct: 803 YTSLID 808
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 27 SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86
SREA+ + +LE ++ GL+P+ ++YN LI ++ D+ F ++KD C
Sbjct: 292 SREAKLM-----LLEMIDVGLKPEPITYNALIDGFMRQG--DIEQAF--RIKDEMVAC-- 340
Query: 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
G ++ + TLL G A ++ LEI+ EM
Sbjct: 341 -GIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E + KGL P+ +++ LI K ++D+ + +
Sbjct: 198 SVLINGLCKESK----MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYK 253
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ +++ EM S L D+ T+TA+
Sbjct: 254 QM-------LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM-SMKGLKPDKITYTAL 305
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 306 IDGCCKEGDL 315
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 228 NGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL------- 280
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD TY L+ G DL + E M N+ LD +TA
Sbjct: 281 KQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQ-ENIRLDDVAYTA 339
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 340 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 384
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G P
Sbjct: 140 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------HASGVQP 192
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 193 DVYTYSVLINGLCKESKMDDANELFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDL---- 247
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
AL EI K++ S L P Y ++++ L + D
Sbjct: 248 AL----EIYKQMLSQS-LLPDLITYNTLIYGLCKKGD 279
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N++I S + +D+A Q+LE + KG+ PD ++YNILI K ++
Sbjct: 634 NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEI------- 686
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E+ K+ G P+ TYA ++ G+ +K+ + +++ EM
Sbjct: 687 ERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 731
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N + N +I A+ +DEA ++ S V+KGL PD +Y+ILI+ C++ + + +
Sbjct: 249 NLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLML 308
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLIL 127
E + G P+ TY L+ GF D++ I EM +C NLI+
Sbjct: 309 LEMI--------DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII 357
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
N I + + ++A+R+ +LE EKG P+ ++YN++I + + LD +
Sbjct: 220 NMISAHCKVGNVKDAKRV-----LLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKR 274
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+ D G PD++TY L+ GF K + ++ EM L + T+ A+
Sbjct: 275 SMVDK-------GLVPDLYTYDILINGFCMEKRSREAKLMLLEMID-VGLKPEPITYNAL 326
Query: 136 VDALLYSGSIK 146
+D + G I+
Sbjct: 327 IDGFMRQGDIE 337
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E V GL+P+++ Y L++A K +++ + E++++ G PD+F Y +L+
Sbjct: 450 EMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG-------ILPDVFCYNSLI 502
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
+GF AK ++ + EM L + T+ A +D +G +++ Y F E++
Sbjct: 503 IGFCKAKRMEEARTYLMEMLE-RRLRPNAHTYGAFIDGYSKAGEMEIADRY----FNEML 557
Query: 161 KRVCSNPGLWPKPHLYVSMMH 181
+ G+ P +Y +++
Sbjct: 558 -----SCGVLPNVGIYTALIE 573
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I+ N ++ +A ++++A +I+ E +EKG+EPDS +Y++LI + + +
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELL 413
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++K P + TY+ ++ G +LQ I+ EM
Sbjct: 414 DEMKKR-------KLAPTVLTYSVIINGLCRCGNLQGTNAILREM 451
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I NA+I+ I++A++I E V G+E + + +N L++ K K++ + ++
Sbjct: 321 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 380
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ + G PD TY+ L+ G +++ E++ EMK L T++ ++
Sbjct: 381 MMEKG-------VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK-RKLAPTVLTYSVII 432
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM--HELAARVD 188
+ L G+++ G A I++ + N GL P +Y ++M H RV+
Sbjct: 433 NGLCRCGNLQ--GTNA------ILREMVMN-GLKPNAVVYTTLMTAHAKEGRVE 477
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 32 RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
++ EA+ I + EKGL P++ +YN LIS K +D E++ C G +
Sbjct: 615 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM------CIK-GIN 667
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
PDI TY L+ G A +++ + +++ L + T+ AMVD
Sbjct: 668 PDIVTYNILIDGLCKAGEIERAKNLFDDIEG-RGLTPNCVTYAAMVDG 714
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+++ +++ A+Q+LE + +G+ PD+ YN++++ C K +K + +
Sbjct: 704 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 763
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS---LLEIVFEMKSCCNLILDRST 131
+++ + G ++ TL+ G+ + LQ LLE + E + I + T
Sbjct: 764 QEMLEKG--------FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQ----FIPNHVT 811
Query: 132 FTAMVD 137
+T+++D
Sbjct: 812 YTSLID 817
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 27 SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86
SREA+ + +LE ++ GL+P+ ++YN LI ++ D+ F ++KD C
Sbjct: 301 SREAKLM-----LLEMIDVGLKPEPITYNALIDGFMRQG--DIEQAF--RIKDEMVAC-- 349
Query: 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
G ++ + TLL G A ++ LEI+ EM
Sbjct: 350 -GIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 381
>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
Length = 495
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +++ ++DEA + E VE+ EP +++Y +LI+ + ++D N
Sbjct: 249 NVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKA---N 305
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRST 131
+ D ++ G P+++TY L+ G A ++ LEI+ M S N++ T
Sbjct: 306 DYFVDMLRR----GVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVV----T 357
Query: 132 FTAMVDALLYSGSIK 146
+T ++ AL G I+
Sbjct: 358 YTRVIGALCKGGQIE 372
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 50/210 (23%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T ++N ++ + ++D AY++ + + D +SYN+L K ++D +
Sbjct: 106 TTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFG 165
Query: 76 QLKDNG-------------QKCSSGGFH-------------------PDIFTYATLLMGF 103
++++N C +G PD+++Y T++ GF
Sbjct: 166 EMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGF 225
Query: 104 RHAKDLQSLLEIVFEM-KSCC--NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
A+ L + ++ M KS C N++ TF ++D L +G + A +F +V
Sbjct: 226 CKARQLPTARYVLRRMIKSGCSPNVV----TFNTLLDGLCLTGKLDE----ANAMFEYMV 277
Query: 161 KRVCSNPGLWPKPHLYVSMM--HELAARVD 188
+R C P Y ++ H A R+D
Sbjct: 278 ERNCE-----PTAVTYTVLITGHARALRID 302
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R +++ I+ N +++ EA+R DEA IL + E G PD SY+IL+ + K
Sbjct: 139 RTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKS 198
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ + G CS PD+ Y T++ GF D+ ++ EM +
Sbjct: 199 GQADDLLRMMAEGGAVCS-----PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-RGIPP 252
Query: 128 DRSTFTAMVDAL 139
D T++++V AL
Sbjct: 253 DFVTYSSVVHAL 264
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+A +D+A I E + G++P+ L+Y +I+A + K+D M Q+ D
Sbjct: 398 NVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMID 457
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PD + Y L+ GF L E++ E+ + + LD F+++++ L
Sbjct: 458 Q-------GVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN-NGMHLDIVLFSSIINNL 509
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G + + A IF V N GL P +Y +M
Sbjct: 510 CKLGRV----MDAQNIFDLTV-----NVGLHPTAVVYSMLM 541
>gi|12324348|gb|AAG52140.1|AC022355_1 hypothetical protein; 19198-19943 [Arabidopsis thaliana]
Length = 233
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 32/200 (16%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+ K P+ ++YN LI K K++D M ++ S G + TY TL+ G
Sbjct: 6 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM-------SQRGLVGNTVTYTTLIQG 58
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
A D EI EM S + D T+ ++D L +G ++ AL +FG + KR
Sbjct: 59 LFQAGDCDMAQEIFKEMVS-DGVPPDIMTYNILLDGLCKNGKLE----KALVVFGYMQKR 113
Query: 163 VC---------------SNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207
+C S G+ P Y +M+ + + + +R+M D
Sbjct: 114 MCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKED----- 168
Query: 208 SPEVQEEAGHLLMEAALNDG 227
P + L+ A L DG
Sbjct: 169 GPLPDSGTYNTLIRAHLRDG 188
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 27/189 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD---VTM 71
NT+ +I+ +A D A +I E V G+ PD ++YNIL+ K KL+ V
Sbjct: 48 NTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDGLCKNGKLEKALVVF 107
Query: 72 PFNEQLKDNGQKCSSG----------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ ++ K G G P++ TY T++ GF + + +MK
Sbjct: 108 GYMQKRMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKE 167
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK--RVCSNPGLWPKPHLYVSM 179
L D T+ ++ A L G E++K R C G L M
Sbjct: 168 DGPLP-DSGTYNTLIRAHLRDGDKAAS--------AELIKEMRSCRFAGDASTYGLVTDM 218
Query: 180 MHELAARVD 188
+H+ R+D
Sbjct: 219 LHD--GRLD 225
>gi|357129833|ref|XP_003566565.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Brachypodium distachyon]
Length = 371
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV----EKGLEPDSLSYNI 56
+F+E + R+ L+ + N V++ +A R+D Q+L V E G PD ++YN
Sbjct: 202 MFQE---LKRDQRCLDVVTFNTVLDMLGKAGRVD---QMLHEVKLMDELGHSPDIVTYNT 255
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I+ + D+ F ++ D G PD+ TY+ L+ GF A + LE+
Sbjct: 256 VINCLRWLGRFDLCKSFATEMFDRG-------ICPDLRTYSALIDGFGRAGRITEALEVF 308
Query: 117 FEMK 120
EMK
Sbjct: 309 EEMK 312
>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
Length = 495
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +++ ++DEA + E VE+ EP +++Y +LI+ + ++D N
Sbjct: 249 NVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKA---N 305
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRST 131
+ D ++ G P+++TY L+ G A ++ LEI+ M S N++ T
Sbjct: 306 DYFVDMLRR----GVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVV----T 357
Query: 132 FTAMVDALLYSGSIK 146
+T ++ AL G I+
Sbjct: 358 YTRVIGALCKGGQIE 372
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 50/210 (23%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
T ++N ++ + ++D AY++ + + D +SYN+L K ++D +
Sbjct: 106 TTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFG 165
Query: 76 QLKDNG-------------QKCSSGGFH-------------------PDIFTYATLLMGF 103
++++N C +G PD+++Y T++ GF
Sbjct: 166 EMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGF 225
Query: 104 RHAKDLQSLLEIVFEM-KSCC--NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
A+ L + ++ M KS C N++ TF ++D L +G + A +F +V
Sbjct: 226 CKARQLPTARYVLRRMIKSGCSPNVV----TFNTLLDGLCLTGKLDE----ANAMFEYMV 277
Query: 161 KRVCSNPGLWPKPHLYVSMM--HELAARVD 188
+R C P Y ++ H A R+D
Sbjct: 278 ERNCE-----PTAVTYTVLITGHARALRID 302
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 29/117 (24%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++++ ++DEA ++ + V KG PD LSYNILI K++++D
Sbjct: 418 NVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLF 477
Query: 75 EQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGF 103
+++ G +K S G PD+ TY+TLL GF
Sbjct: 478 DEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGF 534
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 20/166 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+T+++N + + + + I + + VE EP+ +SY+I+I + K + ++ +
Sbjct: 212 HTMIVNGLCKIGKTSAAI---VWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFY 268
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ S G P + TY +L+ G ++ + I+F+ N+ D TF+ +
Sbjct: 269 HMR-------SIGISPTVVTYNSLIYGMCNSGQWKQ-ASILFKEMLEWNMKPDVVTFSIL 320
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
VDAL G + L AL +FG++++ + P Y S++H
Sbjct: 321 VDALCKEGVV----LEALSVFGKMIQ-----IAMEPDIVTYSSLIH 357
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA 60
F+ ++ + + K N N ++E + +A+ +L V + GL PD ++YNIL+
Sbjct: 367 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 426
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K +L+ M FN N S G PD FT+ L+ G L+ I+ M
Sbjct: 427 FCKEGQLN--MAFNIFNSMN-----SAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMV 479
Query: 121 SCCNLILDRSTFTAMVDALLYSGSIKVV 148
+ LD TFTA++D G K V
Sbjct: 480 K-KGISLDEVTFTALIDGHCKIGKAKDV 506
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I NA+I + + A+Q+L +EKG +P+ +YN L+ + K +
Sbjct: 348 ITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 407
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ DN G PD TY L+ GF L I M S L D TFTA++
Sbjct: 408 VVDN-------GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNS-AGLEPDGFTFTALI 459
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKR 162
D L G ++ A I G +VK+
Sbjct: 460 DGLCKLGRLE----QANGILGSMVKK 481
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 20/178 (11%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACI 62
EN + NR +T N ++A + +++EA +L + K GL P +++ ILI
Sbjct: 511 ENMVENRCLTTAHTF--NCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHC 568
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + +++ E++K G CS P+++TY ++ G + ++ I+F M S
Sbjct: 569 RAGETALSLKMLERMKQAG--CS-----PNVYTYTIIINGLCNNGRVEEAETILFSMSS- 620
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+ + T+ +V A + +G + A I +VK C P H+Y +++
Sbjct: 621 FGVSPNHFTYAVLVKAHVKAGRLD----RAFQIVSTMVKNGCQ-----PNSHIYSALL 669
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILIS 59
+FE+ + E+ + N++ + +I EA R++EA+Q+ E VEKG +P + +Y +LI
Sbjct: 228 VFEK--MSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIK 285
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
A D M +++ ++ P++ TY L+
Sbjct: 286 AKCDIGMTDKAMKMLDEM-------ATKACVPNVHTYTILI 319
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
+K N + N +I I+ A +IL+++ KG+EPDS +Y LIS K +L
Sbjct: 258 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRL---- 313
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E+ K G P+ TY TL+ G+ + DL+ EM ++ ST
Sbjct: 314 ---EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK-KGIMPSVST 369
Query: 132 FTAMVDALLYSGSI 145
+ +V AL G +
Sbjct: 370 YNLLVHALFMEGRM 383
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
++R+ + + N +++ +++EA +L+ +++ G++PD +SYN LIS ++
Sbjct: 498 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG--YGRR 555
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
D+ F +++D + S GF+P + TY L+
Sbjct: 556 GDIKDAF--RVRD---EMLSIGFNPTLLTYNALI 584
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTM 71
K + +V N++++ I A Q++ E VE+G PD +YNI+I+ K + D +
Sbjct: 382 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAV 441
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
N+ + G+ PD+FT+ TL+ G+ L S L++V M + + D T
Sbjct: 442 VMNDAIVK--------GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWT-YGIAPDVIT 492
Query: 132 FTAMVDALLYSGSIKVV 148
+ ++++ L +G K V
Sbjct: 493 YNSVLNGLCKAGKAKEV 509
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 34/183 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
N N I E R++EA ++E + + PD ++YN L+ K K+ +
Sbjct: 245 NKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLG 304
Query: 76 QLKDNG-------------QKCSSG---------------GFHPDIFTYATLLMGFRHAK 107
++ + G C SG GF PD TY +L+ G
Sbjct: 305 RMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEG 364
Query: 108 DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167
D++ LE+ E ++ +L D + ++V L G I L+AL + E+V+ C +P
Sbjct: 365 DIERALELFNEAQA-KDLKPDLVVYNSLVKGLCRQGLI----LHALQVMNEMVEEGC-HP 418
Query: 168 GLW 170
+W
Sbjct: 419 DIW 421
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
V+N + +A + A+ ++E ++ E + KG P++++YNILI K +L E+
Sbjct: 496 VLNGLCKAGK-AKEVNETFE--EMILKGCRPNAITYNILIENFCKINQL-------EEAS 545
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ G PD ++ TL+ GF DL ++F+ LD ++A D
Sbjct: 546 GVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAY-LLFQK-------LDEKGYSATADT 597
Query: 139 ---LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
L+ + S K+ A IFGE++ + G P + Y ++ L AA VD
Sbjct: 598 FNILIGAYSSKLNMQMAEKIFGEMISK-----GYKPDLYTYRILVDGLCKAANVD 647
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 30/153 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +IE + +++EA I+ + GL PD++S+N LI + LD
Sbjct: 524 NAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLF 583
Query: 75 EQLKDNGQKCS----------------------------SGGFHPDIFTYATLLMGFRHA 106
++L + G + S G+ PD++TY L+ G A
Sbjct: 584 QKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKA 643
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++ + EM S + +TF M++ L
Sbjct: 644 ANVDRAYAHLAEMIS-KGFVPSMATFGRMLNLL 675
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
W N I++N + + + D A + +++ KG PD ++N LI K KLD +
Sbjct: 421 WTYN-IIINGLCKMGNIS---DAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQ 476
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
E++ + G PD+ TY ++L G A + + E EM K C
Sbjct: 477 LVERM-------WTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGC 521
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 22/185 (11%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDV 69
E + I+ +I +A R+++A + S+ E G + D+ +YNILI+ + K+L
Sbjct: 347 EGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHE 406
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLIL 127
+++K+ G PD+ TY TLL G A D ++ E++ +M C ++
Sbjct: 407 AYELLQEMKEVG-------IRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVI 459
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187
TF +V G I AL I R G+ P +Y +++ L R
Sbjct: 460 ---TFGTLVHGYCKVGKID----EALRIL-----RSMDESGIHPNNVIYNTLIDFLCKRG 507
Query: 188 DYDIV 192
D D+
Sbjct: 508 DVDLA 512
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I ++ + +IDEA +IL S+ E G+ P+++ YN LI K +D+ +
Sbjct: 457 SVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELF 516
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+++K+ ++ T+ LL G R + E++ +M+
Sbjct: 517 DEMKEK-------SVPANVTTFNALLKGLRDKNMPEKAFELMDQMR 555
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I + +R+DEA +L E + K + PD+++YN LI K+ ++ +
Sbjct: 252 NVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLM 311
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ GQ D+ TY +LL ++L + +MK + T+TA
Sbjct: 312 NEMHHRGQP-------ADVVTYTSLLDALCKNQNLDKATALFMKMKE-RGIQPTMYTYTA 363
Query: 135 MVDALLYSGSIK 146
++D L G +K
Sbjct: 364 LIDGLCKGGRLK 375
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I A A ++ A+ +L E + K + PD +++ILI A K K + F+
Sbjct: 184 NVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK-NAKQIFH 242
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ G +P++++Y ++ G K + + ++ EM N++ D T+ +
Sbjct: 243 AMVQ--------MGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLH-KNMVPDTVTYNS 293
Query: 135 MVDALLYSGSI 145
++D L SG I
Sbjct: 294 LIDGLCKSGRI 304
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
E+ K + N ++ A + ++ E + + + K G++P+ ++YN L+ K+++
Sbjct: 289 ENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVN- 347
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ K + GG +PDI +Y+ ++ GF K + + EM N+I D
Sbjct: 348 ------KAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK-NIIPDV 400
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T+++++D L SG I YAL + ++ R G+ P Y S++ L
Sbjct: 401 VTYSSLIDGLSKSGRIS----YALQLVDQMHDR-----GVPPTIRTYNSILDAL 445
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N ++ N +I++ + + ++EA+ + E + KG+ PD ++Y+ LIS CI K D F
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLF 283
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
N+ + +N PD++T+ L+ F
Sbjct: 284 NKMILEN--------IKPDVYTFNILVNAF 305
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 23/142 (16%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
+++ ++ K N + N++++ + +++A I ++ + G+ PD SY+I+I+ K
Sbjct: 319 DMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKI 378
Query: 65 KKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
KK D M F E + N PD+ TY++L+ G + + L++V +M
Sbjct: 379 KKFDEAMNLFKEMHRKN--------IIPDVVTYSSLIDGLSKSGRISYALQLVDQMH--- 427
Query: 124 NLILDRS------TFTAMVDAL 139
DR T+ +++DAL
Sbjct: 428 ----DRGVPPTIRTYNSILDAL 445
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+F+E ++R++ + + +++I+ ++ RI A Q+++ + ++G+ P +YN ++
Sbjct: 387 LFKE---MHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILD 443
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A K ++D + +LKD G P+++TY+ L+ G + L+ + VFE
Sbjct: 444 ALCKIHQVDKAIALLTKLKDK-------GIQPNMYTYSILIKGLCQSGKLEDARK-VFEG 495
Query: 120 KSCCNLILDRSTFTAMVDALLYSG 143
L+ T+T M+ G
Sbjct: 496 LLVKGHNLNVDTYTIMIQGFCVEG 519
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 23/202 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTM 71
+ + I +I + A +L+ V+ L +P+ + YN +I + K K ++
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAF 245
Query: 72 P-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
F+E + S G PD+ TY+ L+ GF L +++ F N+ D
Sbjct: 246 DLFSEMI--------SKGISPDVVTYSALISGFCILGKLNDAIDL-FNKMILENIKPDVY 296
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
TF +V+A G +K G+ V + G+ P Y S+M + +
Sbjct: 297 TFNILVNAFCKDGKMKE---------GKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVN 347
Query: 191 IVKSPYRRMWPDSTGTISPEVQ 212
KS + M + G ++P++Q
Sbjct: 348 KAKSIFNTM---AQGGVNPDIQ 366
>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 732
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I +A I+A +A R ++A +L E GL P+ +SYN I AC KT + + +
Sbjct: 430 DVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELL 489
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ + G PD+ TY+ ++ + + L++ EM+
Sbjct: 490 REMPAH-------GLAPDVITYSAVIASCAMGRQWEEALDLFREMQ 528
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
++ I A A++ + A ++L S+ +G PD L+Y+ I+AC K + + +K
Sbjct: 190 SSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKG 249
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G K P++ Y+ + R ++ ++++ EM + L D T++ ++DA
Sbjct: 250 QGVK-------PNVIVYSAAISACRKGGQWETAVDLLKEMPA-VGLAPDVITYSTVIDAC 301
Query: 140 LYSGS----------IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
G + G+ A I IV C+ G W + + M E
Sbjct: 302 AKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQE 354
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I ++ I A + + +EA +L + +G+ P+++SY I+ISAC K + +
Sbjct: 360 DVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLL 419
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++++ + G PD+ Y+ + A + L ++ EM + L + ++ +
Sbjct: 420 QEMQAH-------GVPPDVINYSAAIDACAQASRWEQALWLLREMPA-TGLTPNVISYNS 471
Query: 135 MVDALLYSGSIKVV 148
+DA +G K+
Sbjct: 472 AIDACAKTGRSKIA 485
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 21/188 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N+ I+A + R A ++L E GL PD ++Y+ +I++C ++ + +
Sbjct: 465 NVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLF 524
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ G PD+ + T + + L+++ EM + L+ D ++
Sbjct: 525 REMQRQ-------GITPDVVSCNTAINACAQGGWWEEALDVLGEMPT-MGLVPDAISYRT 576
Query: 135 MVDALLYSGSIK----------VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+DA K VGL I CS GLW + + + M LA
Sbjct: 577 AIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDM--LA 634
Query: 185 ARVDYDIV 192
+ D+V
Sbjct: 635 VGLSPDVV 642
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I + VI+A + + + A+++L E KG+ + ++Y+I+I AC K + + +
Sbjct: 290 DVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALL 349
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++++N G PD+ TY++ + + + ++ EM
Sbjct: 350 REMQEN-------GVAPDVITYSSTISACAKKGQWEEAVGLLREM 387
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + ++EA ++ +A ++L+ + KG P+ ++YN++I+ + ++D F
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 269
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+L SS GF PD +Y T+L G AK + + E+ EM K+C + + TF
Sbjct: 270 NRL-------SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC---MPNEVTF 319
Query: 133 TAMVDALLYSGSIK 146
+V G ++
Sbjct: 320 DMLVRFFCRGGMVE 333
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NTI ++ A+R+D A ++L E ++K P+ +++N+L+S + +D +
Sbjct: 485 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 544
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
EQ+ ++G C+ P++ TY TLL G + + LE++ + S + D T+
Sbjct: 545 LVEQMMEHG--CT-----PNLITYNTLLDGITKDCNSEEALELLHGLVS-NGVSPDIVTY 596
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVK--RVCSNPGLWPKPHLYVSMMHELAARVDYD 190
++++ L ++ E +K + + G+ PK +Y ++ L R + D
Sbjct: 597 SSIIGVLSREDRVE-----------EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTD 645
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI V++ A+R ++A ++L E V K P+ +++N I + ++
Sbjct: 385 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 444
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ+ ++G + +I TY L+ GF + S LE+ + M N I + T
Sbjct: 445 EQMSEHGCEV-------NIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTG 497
Query: 135 MVDA 138
+ +A
Sbjct: 498 LCNA 501
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + + +A ++L+++ ++G PD +S+N LI+A +K+ L + +L
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVV--EL 284
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
D + G PD TY TLL +L+ ++ VFE D D
Sbjct: 285 LD---MVRNSGLRPDAITYNTLLSACSRDSNLEGAVK-VFE---------DMEAHRCQPD 331
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYR 197
Y+ I V G L E + G P Y S+++ A + + VK Y+
Sbjct: 332 LWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQ 391
Query: 198 RMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+M G E + ++ GQ+DLAL
Sbjct: 392 QMQKMGFGK-----DEMTYNTIIHMYGKQGQLDLAL 422
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I EA ++ +E KG PD+++YN L+ A + + E++K+
Sbjct: 336 NAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERN-------TEKVKE 388
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
Q+ GF D TY T++ + L L++ +MK D T+T ++D+L
Sbjct: 389 VYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSL 448
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVT 70
++K+ + N++++ + + Q+ + + E GLEPD +YN LI + ++ +
Sbjct: 922 NFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEG 981
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+Q+++ G P + TY +L+ F K L+ E +FE L LDRS
Sbjct: 982 YSLMQQMRNL-------GLDPKLDTYKSLISAFGKQKCLEQ-AEQLFEELLSKGLKLDRS 1033
Query: 131 TFTAMVDALLYSGS 144
+ M+ SGS
Sbjct: 1034 FYHTMMKISRDSGS 1047
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
+K N + N +I I+ A +IL+++ KG+EPDS +Y LIS K +L
Sbjct: 204 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRL---- 259
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E+ K G P+ TY TL+ G+ + DL+ EM ++ ST
Sbjct: 260 ---EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK-KGIMPSVST 315
Query: 132 FTAMVDALLYSGSI 145
+ +V AL G +
Sbjct: 316 YNLLVHALFMEGRM 329
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66
++R+ + + N +++ +++EA +L+ ++ +G++PD +SYN LIS ++
Sbjct: 444 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISG--YGRR 501
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
D+ F ++D + S GF+P + TY L+
Sbjct: 502 GDIKDAF--XVRD---EMLSIGFNPTLLTYNALI 530
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 246 NGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL------- 298
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ + S G PD TY TL+ G DL + E +M N+ LD +TA
Sbjct: 299 KQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQ-ENIRLDEVAYTA 357
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R N GL P Y +++E + D
Sbjct: 358 LISGLCQEGR---------SVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGD 402
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E + KGL P+ + + LI K ++D+ M +
Sbjct: 216 SVLINGLCKESK----MDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYK 271
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ + ++ EM S L D+ T+T +
Sbjct: 272 QM-------LSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEM-SMKGLKPDKITYTTL 323
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 324 IDGCCKEGDL 333
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G P
Sbjct: 158 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQP 210
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + E+ EM L+ + FT ++D +G + +
Sbjct: 211 DVYTYSVLINGLCKESKMDDANELFDEM-LVKGLVPNGVIFTTLIDGHCKNGRVDLA--- 266
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 267 -----MEIYKQMLSQS-LLPDLITYNTLIYGLCKKGD 297
>gi|359496212|ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 30 AQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
A D A+++ + + K E +S+N L+SAC+ +KK D F ++L N G
Sbjct: 105 AGMFDHAHKLFDELPKLNCERTVMSFNALLSACVNSKKFDKIDGFFQELPGN------LG 158
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144
PD+ +Y L+ F L S L ++ EM+ L D TF +++A +GS
Sbjct: 159 IVPDVVSYNILVNAFCEMGSLDSALSVLDEMEK-VGLEPDLITFNTLLNAFYQNGS 213
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 38/179 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT---------- 64
+ + N ++ A E +D A +L+ +EK GLEPD +++N L++A +
Sbjct: 162 DVVSYNILVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIW 221
Query: 65 ---KKLDVT---MPFNEQLK----DNG--------QKCSSGGFHPDIFTYATLLMGFRHA 106
KK +V +N +L+ +N + + G PD+FT +L+ GF +A
Sbjct: 222 DLMKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNA 281
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+L+ E+ + L R+T+ ++ L+ G ++ E+ K VCS
Sbjct: 282 GNLEEAKRWYSEI-ARNELPPVRATYMTLIPFLVEKGDFEMA--------TELCKEVCS 331
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 48/219 (21%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQI--LESVEKGLEPDSLSYNILIS 59
F ++ + W++N IV++ +++ +A+R+DEA I L E G PD ++YN +I+
Sbjct: 110 FAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVIN 169
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ +++ ++ D G P++ TY T++ G A ++V
Sbjct: 170 GFFREGQVEKAYNLFLEMMDQ-------GIPPNVVTYTTVIDGLCKA-------QVVDRA 215
Query: 120 KSCCNLILDR------STFTAMVDALLYSGSIKVV----------GLYALCI-FGEIVKR 162
K ++DR T+ ++ L +G K V GL CI + ++
Sbjct: 216 KGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDY 275
Query: 163 VCSN---------------PGLWPKPHLYVSMMHELAAR 186
+C N G+ P +Y ++H A +
Sbjct: 276 LCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATK 314
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N + N + A + I+EA I + ++GL PD +S+ LI A K ++ D + F
Sbjct: 335 NRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQF 394
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
N+ + + G P+IF +++L+ G + E+ FE+
Sbjct: 395 NQMINE--------GVTPNIFVFSSLVYGLCTVGKWEKAEELFFEV 432
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
NT++ N E R+ EA ++++ + G+ P+ +SYN L++ T ++D
Sbjct: 444 FNTLMCNLCNEG-----RVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKL 498
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + NG K P+ FTY LL G+ A+ + + EM
Sbjct: 499 LDVMVSNGLK-------PNEFTYTILLRGYCKARRVDDAYSLFREM 537
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYN-ILISACIKTKKLDVTMPF 73
N I N +I+ + ++ID+A++++ + + +GL+P++++YN IL C K+ D+
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYC---KQGDI---- 547
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ D + ++ GF D+ TY TL+ G A Q L+++ M+
Sbjct: 548 -KKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
N++V+R + N +I A R++EA + V KG+ PD ++NILI+A K
Sbjct: 345 NQMVDRGCLP-DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ + E++K++G C+ PD TY TL+ L L+++ +M+S
Sbjct: 404 VGDPHLALRLFEEMKNSG--CT-----PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456
Query: 124 NLILDRSTFT--AMVDAL 139
RST T ++D L
Sbjct: 457 ---CPRSTITYNTIIDGL 471
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEK--GLEPDSLSYNILISACIKT 64
+ RE ++ V+++ +++ Q D+A IL ++ G++ D++ YN L++ ++
Sbjct: 100 MRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEG 159
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+ + L+ + + G PD+ T+ TL+ A +++ + I+ E S
Sbjct: 160 SKMKL-------LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV-IMLEEMSSRG 211
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+ D +TFT ++ + GSI+ AL + +++ CS
Sbjct: 212 VAPDETTFTTLMQGFVEEGSIEA----ALRVKARMLEMGCS 248
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDV 69
+ ++ + I N + + + A ++++ V++G +PD +YNI+++ K +L+
Sbjct: 280 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
Q+ D G C PDI T+ TL+ L+ L++ ++ + + D
Sbjct: 340 AKGILNQMVDRG--CL-----PDITTFNTLIAALCTGNRLEEALDLARQV-TVKGVSPDV 391
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
TF +++AL G + AL +F E+ N G P Y +++ L +
Sbjct: 392 YTFNILINALCKVGDPHL----ALRLFEEM-----KNSGCTPDEVTYNTLIDNLCS 438
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYN-ILISACIKTKKLDVTMPF 73
N I N +I+ + ++ID+A++++ + + +GL+P++++YN IL C K+ D+
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYC---KQGDI---- 547
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ D + ++ GF D+ TY TL+ G A Q L+++ M+
Sbjct: 548 -KKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
N++V+R + N +I A R++EA + V KG+ PD ++NILI+A K
Sbjct: 345 NQMVDRGCLP-DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ + E++K++G C+ PD TY TL+ L L+++ +M+S
Sbjct: 404 VGDPHLALRLFEEMKNSG--CT-----PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456
Query: 124 NLILDRSTFT--AMVDAL 139
RST T ++D L
Sbjct: 457 ---CPRSTITYNTIIDGL 471
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEK--GLEPDSLSYNILISACIKT 64
+ RE ++ V+++ +++ Q D+A IL ++ G++ D++ YN L++ ++
Sbjct: 100 MRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEG 159
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+ + L+ + + G PD+ T+ TL+ A +++ + ++ EM S
Sbjct: 160 SKMKL-------LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSS-RG 211
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+ D +TFT ++ + GSI+ AL + +++ CS
Sbjct: 212 VAPDETTFTTLMQGFVEEGSIEA----ALRVKARMLEMGCS 248
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDV 69
+ ++ + I N + + + A ++++ V++G +PD +YNI+++ K +L+
Sbjct: 280 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
Q+ D G C PDI T+ TL+ L+ L++ ++ + + D
Sbjct: 340 AKGILNQMVDRG--CL-----PDITTFNTLIAALCTGNRLEEALDLARQV-TVKGVSPDV 391
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
TF +++AL G + AL +F E+ N G P Y +++ L +
Sbjct: 392 YTFNILINALCKVGDPHL----ALRLFEEM-----KNSGCTPDEVTYNTLIDNLCS 438
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I + +R+DEA +L E + K + PD+++YN LI K+ ++ +
Sbjct: 289 NVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLM 348
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ GQ D+ TY +LL ++L + +MK + T+TA
Sbjct: 349 NEMHHRGQP-------ADVVTYTSLLDALCKNQNLDKATALFMKMKE-RGIQPTMYTYTA 400
Query: 135 MVDALLYSGSIK 146
++D L G +K
Sbjct: 401 LIDGLCKGGRLK 412
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQ 76
+ N +I A + + EA +L + K G++P ++Y+ L+ C+ + + F+
Sbjct: 222 IYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAM 281
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
++ G +P++++Y ++ G K + + ++ EM N++ D T+ +++
Sbjct: 282 VQ--------MGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLH-KNMVPDTVTYNSLI 332
Query: 137 DALLYSGSI 145
D L SG I
Sbjct: 333 DGLCKSGRI 341
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
E++ + N+ N +I+ + ID A + LE V +G PD ++YNIL++A K
Sbjct: 345 EMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKD 404
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC- 123
K+D + QL SS G P + +Y T++ G + +E++ EM C
Sbjct: 405 GKVDDAVVILSQL-------SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEM---CY 454
Query: 124 -NLILDRSTFTAMVDALLYSGSIK 146
L D T T++V L G ++
Sbjct: 455 KGLKPDLITCTSVVGGLSREGKVR 478
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +I+A+ + + +A ++ E KG +PD ++YN+LI K +LD + F
Sbjct: 215 DVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFL 274
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
++L S G PD+ ++ +L
Sbjct: 275 KKL-------PSYGCQPDVISHNMIL 293
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 9/120 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ NA+++ +A +EA +L+ +E G P+ ++YN L+SA + + +
Sbjct: 224 VTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAA----AE 279
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+KD+ S G PD+FTY +LL + A ++ +EI +M++ N + TF A++
Sbjct: 280 MKDS---MVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRT-SNCTPNSFTFNALI 335
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS-ACIKTK 65
+ E + L+ ++I A ++ EA E + E G +P ++YN++I K +
Sbjct: 108 LREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGR 167
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ + E++K + G PD +TY T + + E+ +MKS N
Sbjct: 168 SWENILELFEEMK-------AQGIQPDEYTYNTAITACASGSLCEEATELFTQMKS-SNC 219
Query: 126 ILDRSTFTAMVDALLYSG 143
DR T+ A++D +G
Sbjct: 220 TPDRVTYNALLDVYGKAG 237
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 45/193 (23%)
Query: 3 EENEIVNREHWKL-NTIVMNAVIEASREAQRIDEA---YQILESVEKGLEPDSLSYNILI 58
E+ + R H L +T NA+I + +D+A + +L S GLEPD ++YN L+
Sbjct: 523 EDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRST--GLEPDVVTYNCLM 580
Query: 59 SACIKT---KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
+ +K + T+ ++C + G PD+ +Y T++ + L S I
Sbjct: 581 GMYGREGMYRKCEATL----------RECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRI 630
Query: 116 VFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175
EM S N I D+ Y+ VG Y N G++P+
Sbjct: 631 FHEMVS--NGI--------QPDSFTYN---TFVGCYV-------------NGGMFPEALS 664
Query: 176 YVSMMHELAARVD 188
V MH+ + D
Sbjct: 665 VVKHMHKTGCKPD 677
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 26/154 (16%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E + G PD +SYN +I + K +L T F+E + S G PD FTY T
Sbjct: 598 ECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMV--------SNGIQPDSFTYNTF 649
Query: 100 LMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGE 158
+ + + L +V M K+ C D T+ +VDA G + V
Sbjct: 650 VGCYVNGGMFPEALSVVKHMHKTGCK--PDEVTYRTLVDAYCKIGKFEEV--------ER 699
Query: 159 IVKRVCSNPGLWPKPHLYVSMMHELAARV-DYDI 191
I+K + S+ P+ + +AARV DYD+
Sbjct: 700 ILKFIKSS-----DPNFSKAAYRRIAARVDDYDL 728
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYN-ILISACIKTKKLDVTMPF 73
N I N +I+ + ++ID+A++++ + + +GL+P++++YN IL C K+ D+
Sbjct: 403 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYC---KQGDI---- 455
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ D + ++ GF D+ TY TL+ G A Q L+++ M+
Sbjct: 456 -KKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 501
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
N++V+R + N +I A R++EA + V KG+ PD ++NILI+A K
Sbjct: 253 NQMVDRGCLP-DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 311
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ + E++K++G C+ PD TY TL+ L L+++ +M+S
Sbjct: 312 VGDPHLALRLFEEMKNSG--CT-----PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 364
Query: 124 NLILDRSTFT--AMVDAL 139
RST T ++D L
Sbjct: 365 ---CPRSTITYNTIIDGL 379
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEK--GLEPDSLSYNILISACIKT 64
+ RE ++ V+++ +++ Q D+A IL ++ G++ D++ YN L++ ++
Sbjct: 8 MRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEG 67
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+ + L+ + + G PD+ T+ TL+ A +++ + ++ EM S
Sbjct: 68 SKMKL-------LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSS-RG 119
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+ D +TFT ++ + GSI+ AL + +++ CS
Sbjct: 120 VAPDETTFTTLMQGFVEEGSIEA----ALRVKARMLEMGCS 156
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDV 69
+ ++ + I N + + + A ++++ V++G +PD +YNI+++ K +L+
Sbjct: 188 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 247
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
Q+ D G C PDI T+ TL+ L+ L++ ++ + + D
Sbjct: 248 AKGILNQMVDRG--C-----LPDITTFNTLIAALCTGNRLEEALDLARQV-TVKGVSPDV 299
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
TF +++AL G + AL +F E+ N G P Y +++ L +
Sbjct: 300 YTFNILINALCKVGDPHL----ALRLFEEM-----KNSGCTPDEVTYNTLIDNLCS 346
>gi|225439759|ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Vitis vinifera]
gi|297741486|emb|CBI32618.3| unnamed protein product [Vitis vinifera]
Length = 842
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 14/158 (8%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+ D SYNIL+ AC ++D+ ++++ S+G D+FTY+T++ F
Sbjct: 308 GVTADMASYNILLKACCVAGRVDLAQEIYREVQNLE---SNGMLKLDVFTYSTIIKVFAD 364
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
AK Q L+I +M S +I + T++A++ + +G + A+ +F E++ C
Sbjct: 365 AKLWQMALKIKEDMLS-AGVIPNTVTWSALISSCANAG----ITEQAIQLFKEMLLAGCE 419
Query: 166 NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203
P Y ++H YD ++ W DS
Sbjct: 420 -----PNSQCYNILLHACVEACQYDRAFRLFQS-WKDS 451
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ +A+I + A ++A Q+ E + G EP+S YNIL+ AC++ + D
Sbjct: 386 NTVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLF 445
Query: 75 EQLKDN 80
+ KD+
Sbjct: 446 QSWKDS 451
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 21/154 (13%)
Query: 30 AQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
AQ+++EA ++K + P+ ++N L+SA K+K + + +KD
Sbjct: 103 AQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDR-------- 154
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFTAMVDALLYSGSIKV 147
F PD TY+ LL G+ +L EI EM S C D T+ MVD L +G +
Sbjct: 155 FVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCR--PDIVTYGIMVDVLCKAGRVD- 211
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
AL I E+ VC P P +Y ++H
Sbjct: 212 ---EALGIVNEMDSTVCK-----PTPFIYSVLVH 237
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
N N ++ A +++ + +A +I +S++ PDS +Y+IL+ K D +P
Sbjct: 124 NLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGK----DPNLP--- 176
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ ++ ++ S G PDI TY ++ A + L IV EM S
Sbjct: 177 KAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDS 222
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTMPFNEQ 76
V NA+I A +A R+ Y++L ++ KG+ P+S ++NI++S+ I + D F
Sbjct: 266 VYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRM 325
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K C PD TY ++ F +L+ L++ MK + TF ++
Sbjct: 326 IK----VC-----EPDADTYTMMIKMFCERDELKKALKVWKYMK-LKRFMPSMHTFQVLI 375
Query: 137 DALLYSGSI 145
+ L G +
Sbjct: 376 NGLCEKGDV 384
>gi|224059682|ref|XP_002299968.1| predicted protein [Populus trichocarpa]
gi|222847226|gb|EEE84773.1| predicted protein [Populus trichocarpa]
Length = 352
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + N V++ A RIDE S+ E G+ PD +SYN L++ K +LD+
Sbjct: 200 KPDLVTYNTVLDLLGHAGRIDEMLCEFASMKEAGILPDFISYNTLLNQLWKVGRLDLCSV 259
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++ + ++ G PD+ TY L+ F + +++ L + EMK+
Sbjct: 260 YSRDMVES-------GIEPDLLTYTALIGSFGQSGNIEESLRLFNEMKT 301
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
N I + +++ E+ R+ EA ++ E + + + PD+L+YN+LI+ K+D
Sbjct: 225 NLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKI 284
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E +K NG CS P++F Y+ L+ GF L+ ++ EMK L D +T
Sbjct: 285 MEFMKSNG--CS-----PNVFNYSALMSGFCKEGRLEEAMDAFEEMK-IFGLKQDTVGYT 336
Query: 134 AMVDALLYSGSI 145
+++ G I
Sbjct: 337 ILINYFCRFGRI 348
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E +EKGL P+S+++ LI K +D+ M +
Sbjct: 216 SVLINGLCKESK----MDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYK 271
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY L+ G DL+ +++ EM S L D+ T+T +
Sbjct: 272 QM-------LSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEM-SMXGLKPDKITYTTL 323
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 324 IDGCCKEGDL 333
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G HP
Sbjct: 158 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMH-------ASGVHP 210
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + ++ EM L+ + TFT ++D +G + +
Sbjct: 211 DVYTYSVLINGLCKESKMDDANKLFDEMLE-KGLVPNSVTFTTLIDGHCKNGWVDLA--- 266
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 267 -----MEIYKQMLSQS-LLPDLVTYNALIYGLCKKGD 297
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ +I+ + +D A +I + + + L PD ++YN LI K L
Sbjct: 246 NSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDL------- 298
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD TY TL+ G DL + E +M N+ LD +TA
Sbjct: 299 KQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHR-KMMIQENIRLDDVAYTA 357
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 358 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGD 402
>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
Length = 496
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ +A ++L+ + +G P +++N+L+ K K+ +PF
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K + GF P TY L+ GF A+D+ + +MK L + T+T
Sbjct: 202 NQMK-------AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKE-RGLEPTKVTYTI 253
Query: 135 MVDAL 139
++D+
Sbjct: 254 LIDSF 258
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 412
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNI 56
+FE E+ N ++KL+ + +I+ +A +++ A++ + + ++GL+P+ ++ NI
Sbjct: 288 LFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNI 347
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I + +++D E++ +K G PDI TY TLL GF + L+ ++ ++
Sbjct: 348 MIHGFCRVEQVDKANILFEKM----EKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLL 403
Query: 117 FEM 119
+M
Sbjct: 404 HKM 406
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ + N++I+ + + A ++ S+ KG E + +SY ILI+ K K++ M
Sbjct: 165 LDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNL 224
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ G++ P++ TY+TLL G + ++ MK+ + +D +
Sbjct: 225 YNEMPQVGKR-------PNVKTYSTLLTGLLQTGKVGDANKLFGVMKA-SGISVDSCIYV 276
Query: 134 AMVDALLYSG 143
+D L +G
Sbjct: 277 IFLDGLCKNG 286
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + A + +A + + + E G EPD ++Y LI K+ LDV M
Sbjct: 413 NVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMY 472
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E+++D G PD FTY+ ++ A L + + M
Sbjct: 473 EKMQD-------AGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRM 510
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A ++ A+++ V++G P+ ++YNI+I+ K + ++ +
Sbjct: 483 DTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLY 542
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +G F PD TY ++ H L+ I EM+ N + D +
Sbjct: 543 RDMQQSG-------FEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQK-KNWVPDEPVYGL 594
Query: 135 MVDALLYSGSIK 146
+VD SG+++
Sbjct: 595 LVDLWGKSGNVQ 606
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LNTI N++I++ + R+ E+ ++ E V G++P+ ++YN LI+ K+D M
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKL 533
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ S G P+ TY+TL+ G+ ++ L + EM+S
Sbjct: 534 LSGM-------VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 34 DEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D+AY E +++G+ PD ++YN +I+A K + +D M + N G PD
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-------GVMPD 265
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
TY ++L G+ + + + + +M+S + D T++ ++D L +G + A
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRC----MEA 320
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
IF + KR GL P+ Y +++ A +
Sbjct: 321 RKIFDSMTKR-----GLKPEITTYGTLLQGYATK 349
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K NT+ + +I + R+++A + + +E G+ PD ++YNI++ +T++
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ ++G + ++ TY +L G K L++ F+ +L L+ TF
Sbjct: 603 LYVRITESGTQI-------ELSTYNIILHGLCKNKLTDDALQM-FQNLCLMDLKLEARTF 654
Query: 133 TAMVDALLYSG 143
M+DALL G
Sbjct: 655 NIMIDALLKVG 665
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTK 65
V ++ ++++ I +++ +R +A I+ E G P+ SYNIL+
Sbjct: 113 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDEN 172
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ + + D+ GG PD+ +Y T++ GF D EM +
Sbjct: 173 RSQEALELLHMMADD----RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD-RGI 227
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ D T+ +++ AL + ++ A+ + +VK G+ P Y S++H
Sbjct: 228 LPDVVTYNSIIAALCKAQAMD----KAMEVLNTMVKN-----GVMPDCMTYNSILH 274
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V + +I A + ++D+A + + ++GL P++++Y +I K+ +++ M + EQ+
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRSTFTA 134
D G P Y +L+ G + E++ EM C N I F +
Sbjct: 433 IDE-------GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIF----FNS 481
Query: 135 MVDALLYSGSI 145
++D+ G +
Sbjct: 482 IIDSHCKEGRV 492
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E + KGL P+ +++ LI K ++D+ M +
Sbjct: 197 SVLINGLCKESK----MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 252
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ ++ EM S L D+ T+T +
Sbjct: 253 QM-------LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM-SMKELKPDKITYTTL 304
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 305 IDGCCKEGDL 314
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 227 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 286
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ S PD TY TL+ G DL S E M N+ LD +TA
Sbjct: 287 DEM-------SMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ-ENIRLDEVAYTA 338
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R N GL P Y +++E + D
Sbjct: 339 LISGLCQEGR---------SVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGD 383
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G P
Sbjct: 139 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQP 191
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 192 DVYTYSVLINGLCKESKMDDANELFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDLA--- 247
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 248 -----MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 278
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + A + +A + + + E G EPD ++Y LI K+ LDV M
Sbjct: 413 NVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMY 472
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E+++D G PD FTY+ ++ A L + + M
Sbjct: 473 EKMQD-------AGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRM 510
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A ++ A+++ V++G P+ ++YNI+I+ K + ++ +
Sbjct: 483 DTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLY 542
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +G F PD TY ++ H L+ I EM+ N + D +
Sbjct: 543 RDMQQSG-------FEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQK-KNWVPDEPVYGL 594
Query: 135 MVDALLYSGSIK 146
+VD SG+++
Sbjct: 595 LVDLWGKSGNVQ 606
>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
Length = 467
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ +A ++L+ + +G P +++N+L+ K K+ +PF
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+K + GF P TY L+ GF A+D+ + +MK L + T+T
Sbjct: 202 NQMK-------AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKE-RGLEPTKVTYTI 253
Query: 135 MVDAL 139
++D+
Sbjct: 254 LIDSF 258
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 30 AQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
+I + ILE V G++PD ++YN +IS + +D +L + + C F
Sbjct: 448 GDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAF----ELLVDMRSCE---F 500
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSG 143
HP + TY +L+GF A ++ ++++ M + C + +T+T +++ + ++G
Sbjct: 501 HPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCR--PNETTYTVLIEGIGFAG 553
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I +I+EA +L+ + EKGL PD+ SY+ LI+A + +LDV + F
Sbjct: 328 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 387
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-CNLILDRSTFT 133
E + S G PDI Y T+L LEI ++ C+ + S++
Sbjct: 388 ETM-------ISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS--PNSSSYN 438
Query: 134 AMVDALLYSG 143
M AL SG
Sbjct: 439 TMFSALWSSG 448
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 21/180 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
E + R+ + + I+ +I+ + + +A +++E +EK +PD +YN LI+ K
Sbjct: 109 ETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMN 168
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CC 123
++D ++++ S F PD TY ++ L L+++ ++ S C
Sbjct: 169 RIDDATRVLDRMR-------SKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQ 221
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ T+T +++A + G + AL + E++ R GL P Y +++ +
Sbjct: 222 PTVI---TYTILIEATMLEGGVD----EALKLLDEMLSR-----GLKPDMFTYNTIIRGM 269
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 44/210 (20%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
+E+++R K + N +I + +D A++++ ++E KG EPD +SYNIL+ A +
Sbjct: 248 DEMLSR-GLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLN 306
Query: 64 TKKLD-----VTMPFNEQLKDN--------GQKCSSG---------------GFHPDIFT 95
K + +T F+E+ N C G G PD ++
Sbjct: 307 QGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYS 366
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFTAMVDALLYSGSIKVVGLYAL 153
Y L+ F L +E + M S C I++ +T A L +G AL
Sbjct: 367 YDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLA---TLCKNGKAD----QAL 419
Query: 154 CIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
IFG++ + CS P Y +M L
Sbjct: 420 EIFGKLGEVGCS-----PNSSSYNTMFSAL 444
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD--VTMPFN 74
I +IEA+ +DEA ++L E + +GL+PD +YN +I K +D M N
Sbjct: 225 ITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRN 284
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRST 131
+LK G PD+ +Y LL + ++ + L+ +F K N++ T
Sbjct: 285 LELK---------GCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV----T 331
Query: 132 FTAMVDALLYSGSIK 146
++ ++ L G I+
Sbjct: 332 YSILITTLCRDGKIE 346
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N+ V N +I+ + EA +++ ++K G++PD +Y ISAC K ++
Sbjct: 726 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 785
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G K P+I TY TL+ G+ A + L EMK+ + D++ +
Sbjct: 786 EEMEALGVK-------PNIKTYTTLIKGWARASLPEKALSCYEEMKA-MGIKPDKAVYHC 837
Query: 135 MVDALLYSGSIKVVGLYA 152
++ +LL SI +Y+
Sbjct: 838 LLTSLLSRASIAEAYIYS 855
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
E + ++ E K N + +I + + A+ + E V++G++PD + YN +ISA
Sbjct: 502 LEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISA 561
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+D + ++++ + P T+ ++ G+ + D++ LE VF+M
Sbjct: 562 FCGMGNMDRAIQTVKEMQKLRHR-------PTTRTFMPIIHGYAKSGDMRRSLE-VFDMM 613
Query: 121 SCCNLILDRSTFTAMVDALL 140
C + TF +++ L+
Sbjct: 614 RRCGCVPTVHTFNGLINGLV 633
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LNTI N++I++ + R+ E+ ++ E V G++P+ ++YN LI+ K+D M
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKL 533
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ S G P+ TY+TL+ G+ ++ L + EM+S
Sbjct: 534 LSGM-------VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 34 DEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D+AY E +++G+ PD ++YN +I+A K + +D M + N G PD
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-------GVMPD 265
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
TY ++L G+ + + + + +M+S + D T++ ++D L +G + A
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRC----MEA 320
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
IF + KR GL P+ Y +++ A +
Sbjct: 321 RKIFDSMTKR-----GLKPEITTYGTLLQGYATK 349
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K NT+ + +I + R+++A + + +E G+ PD ++YNI++ +T++
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ ++G + ++ TY +L G K L++ F+ +L L+ TF
Sbjct: 603 LYVRITESGTQI-------ELSTYNIILHGLCKNKLTDDALQM-FQNLCLMDLKLEARTF 654
Query: 133 TAMVDALLYSG 143
M+DALL G
Sbjct: 655 NIMIDALLKVG 665
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTK 65
V ++ ++++ I +++ +R +A I+ E G P+ SYNIL+
Sbjct: 113 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDEN 172
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ + + D+ GG PD+ +Y T++ GF D EM +
Sbjct: 173 RSQEALELLHMMADD----RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD-RGI 227
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ D T+ +++ AL + ++ A+ + +VK G+ P Y S++H
Sbjct: 228 LPDVVTYNSIIAALCKAQAMD----KAMEVLNTMVKN-----GVMPDCMTYNSILH 274
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V + +I A ++D+A + + ++GL P++++Y +I K+ +++ M + EQ+
Sbjct: 373 VFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRSTFTA 134
D G P Y +L+ G + E++ EM C N I F +
Sbjct: 433 IDE-------GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIF----FNS 481
Query: 135 MVDALLYSGSI 145
++D+ G +
Sbjct: 482 IIDSHCKEGRV 492
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL------- 292
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD FTY TL+ G DL + E M N+ LD +TA
Sbjct: 293 KQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQ-ENIRLDDVAYTA 351
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 352 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGD 396
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G P
Sbjct: 152 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQP 204
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDLA--- 260
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 261 -----MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 291
>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 451
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILIS 59
+F + +N E N + N+++ A E + AY ++ + KGL P+ +Y++L++
Sbjct: 161 VFNQCNSLNCEQ---NVDIYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKTTYSVLVN 217
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K F E++ S GF+P + L+ G +A +S E+VF+M
Sbjct: 218 GWCSNGKFKEAQLFLEEM-------SKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKM 270
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSI 145
S + D +TF +++A+ SG +
Sbjct: 271 -SKEGFVPDVNTFNCLIEAICNSGEV 295
>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g77360, mitochondrial; Flags: Precursor
gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ LN V+ AQ++DEA +EK L P+ +++N L+SA K+K +
Sbjct: 161 RKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVR 220
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
E ++D F PD TY+ LL G+ +L E+ EM + C+
Sbjct: 221 KAQEVFENMRDR--------FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCH--P 270
Query: 128 DRSTFTAMVDALLYSGSI 145
D T++ MVD L +G +
Sbjct: 271 DIVTYSIMVDILCKAGRV 288
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
N + N ++ A +++ + +A ++ E++ PDS +Y+IL+ K L
Sbjct: 202 NLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFR 261
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ D G HPDI TY+ ++ A + L IV M
Sbjct: 262 EMID-------AGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
V R + + + NA+I + + A Q+L + K GL P+++ YN LI+
Sbjct: 602 VRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNM 661
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ F E + GG D TY TL+ GF ++ LE+ EM + I
Sbjct: 662 MKEVSKFYESM-------IKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMA-KGYI 713
Query: 127 LDRSTFTAMVDALLYSGSI 145
D TFTA+ L SG I
Sbjct: 714 PDAFTFTALTHGLCRSGDI 732
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N +I +A ++ EA + + ++K G++P +YN L+ K +D +
Sbjct: 400 DVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLY 459
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ G F P++ TY TL+ G+ KD + ++ EMK
Sbjct: 460 SEMPMEG-------FKPNVVTYITLMRGYIAKKDFDNAYALLDEMK 498
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTK 65
I+ ++ NT+V N++I + + E + ES ++ G+ D+ +Y LI K
Sbjct: 636 ILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDG 695
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ + ++ + G+ PD FT+ L G + D+ +++ EM+
Sbjct: 696 NVAFALELYSEMM-------AKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMR 743
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N+V+ +A +++E + E + KG P+ ++YNILI ++ K+
Sbjct: 467 DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM------- 519
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS 111
E+ K S G HPD ++ TL+ GF DL+
Sbjct: 520 EEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEG 556
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTM 71
K + +V N++++ I A Q++ E E+G PD +YNI+I+ K + D T+
Sbjct: 360 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 419
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
N+ + G+ PD+FT+ TL+ G+ L S L++V M + D T
Sbjct: 420 VMNDAIMK--------GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE-YGIAPDTIT 470
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS-NP 167
+ ++++ L +G + V F E++ + C NP
Sbjct: 471 YNSVLNGLCKAGKVNEVNE----TFQEMILKGCHPNP 503
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N N I EA R+ EA ++++ + PD ++YN LI K M +
Sbjct: 222 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYL 281
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI----VFEMKSCCNLILDRS 130
++ + G C PD FTY T++ G+ +Q E+ VF+ + D+
Sbjct: 282 RRMMNQG--CL-----PDDFTYNTIIDGYCKISMVQEATELLKDAVFK-----GFVPDQV 329
Query: 131 TFTAMVDALLYSGSIK 146
T+ ++++ L G ++
Sbjct: 330 TYCSLINGLCAEGDVE 345
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA-CIKTKKL 67
R + + + N +I + EA L + +G PD +YN +I C K+
Sbjct: 251 RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYC----KI 306
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ E LKD K GF PD TY +L+ G D++ LE+ E ++ +
Sbjct: 307 SMVQEATELLKDAVFK----GFVPDQVTYCSLINGLCAEGDVERALELFNEAQA-KGIKP 361
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
D + ++V L G I L+AL + E+ + C
Sbjct: 362 DIVVYNSLVKGLCLQGLI----LHALQVMNEMAEEGC 394
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +IE + +++EA + I++ ++GL PD++S+N LI + L+
Sbjct: 502 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 561
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--------CCNLI 126
++L++ G ++ T+ TL+ F ++ +I EM S ++
Sbjct: 562 QKLEEKGYSATAD-------TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 614
Query: 127 LDRSTFTAMVD 137
+D S TA VD
Sbjct: 615 IDGSCKTANVD 625
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 30/163 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N VI + RI+EA+ +L +E KG PD +SY+ +I+ + +LD
Sbjct: 668 NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLI 727
Query: 75 EQLKDNGQKCSS----------------------------GGFHPDIFTYATLLMGFRHA 106
E++K G K +S G PD Y TL+ GF
Sbjct: 728 EKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKR 787
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
D+++ + +EM S ++ D T+TA++ G + G
Sbjct: 788 GDIRAASKFFYEMHS-RDITPDVLTYTAIISGFCQIGDMVEAG 829
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I ++ +A I +A+++ ++ G P+ ++Y LI K LD N
Sbjct: 843 DIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA---N 899
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L + + G P+IFTY +++ G + +++ +++V E ++ L D T+T
Sbjct: 900 ELLHEMWKI----GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEA-AGLNADTVTYTT 954
Query: 135 MVDALLYSGSI 145
++DA SG +
Sbjct: 955 LMDAYCKSGEM 965
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 18/196 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E + ++ K N+ ++I ++ EA + E + +G+ PD++ Y L+ K
Sbjct: 728 EKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKR 787
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ F ++ S PD+ TY ++ GF D+ ++ EM C
Sbjct: 788 GDIRAASKFFYEMH-------SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM-LCRG 839
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L D TFT +++ +G IK A + +++ CS P Y +++ L
Sbjct: 840 LEPDIITFTELMNGYCKAGHIKD----AFRVHNHMIQAGCS-----PNVVTYTTLIDGLC 890
Query: 185 ARVDYDIVKSPYRRMW 200
D D MW
Sbjct: 891 KEGDLDSANELLHEMW 906
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+I + + EA ++ E + +GLEPD +++ L++ K + +
Sbjct: 808 DVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVH 867
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G CS P++ TY TL+ G DL S E++ EM L + T+ +
Sbjct: 868 NHMIQAG--CS-----PNVVTYTTLIDGLCKEGDLDSANELLHEMWK-IGLQPNIFTYNS 919
Query: 135 MVDALLYSGSI----KVVGLY 151
+V+ L SG+I K+VG +
Sbjct: 920 IVNGLCKSGNIEEAVKLVGEF 940
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
+K N + N +I I+ A +IL+++ KG+EPDS +Y LIS K +L
Sbjct: 280 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRL---- 335
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E+ K G P+ TY TL+ G+ + DL+ EM ++ ST
Sbjct: 336 ---EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK-KGIMPSVST 391
Query: 132 FTAMVDALLYSGSI 145
+ +V AL G +
Sbjct: 392 YNLLVHALFMEGRM 405
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
++R+ + + N +++ +++EA +L+ +++ G++PD +SYN LIS ++
Sbjct: 520 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG--YGRR 577
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
D+ F +++D + S GF+P + TY L+
Sbjct: 578 GDIKDAF--RVRD---EMLSIGFNPTLLTYNALI 606
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTM 71
K + +V N++++ I A Q++ E E+G PD +YNI+I+ K + D T+
Sbjct: 357 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 416
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
N+ + G+ PD+FT+ TL+ G+ L S L++V M + D T
Sbjct: 417 VMNDAIMK--------GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE-YGIAPDTIT 467
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC-SNP 167
+ ++++ L +G + V F E++ + C NP
Sbjct: 468 YNSVLNGLCKAGKVNEVNE----TFQEMILKGCHPNP 500
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N+V+ +A +++E + E + KG P+ ++YNILI ++ K+
Sbjct: 464 DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM------- 516
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
E+ K S G HPD ++ TL+ GF DL+
Sbjct: 517 EEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 552
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N N I EA R+ EA ++++ + PD ++YN LI K M +
Sbjct: 219 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYL 278
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI----VFEMKSCCNLILDRS 130
++ + G C PD FTY T++ G+ +Q E+ VF+ + D+
Sbjct: 279 RRMMNQG--CL-----PDDFTYNTIIDGYCKISMVQEATELLKDAVFK-----GFVPDQV 326
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T+ ++++ L G ++ AL +F E + G+ P +Y S++ L
Sbjct: 327 TYCSLINGLCAEGDVE----RALELFNEAQAK-----GIKPDIVVYNSLVKGL 370
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I + EA L + +G PD +YN +I K + +
Sbjct: 254 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK---ISMVQEAT 310
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E LKD K GF PD TY +L+ G D++ LE+ E ++ + D + +
Sbjct: 311 ELLKDAVFK----GFVPDQVTYCSLINGLCAEGDVERALELFNEAQA-KGIKPDIVVYNS 365
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
+V L G I L+AL + E+ + C
Sbjct: 366 LVKGLCLQGLI----LHALQVMNEMAEEGC 391
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +IE + +++EA + I++ ++GL PD++S+N LI + L+
Sbjct: 499 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 558
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--------CCNLI 126
++L++ G ++ T+ TL+ F ++ +I EM S ++
Sbjct: 559 QKLEEKGYSATAD-------TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 611
Query: 127 LDRSTFTAMVDA--LLYSGSIKVVGLYALCIFGEIVKRVCSN 166
+D S TA VD + IK + ++ FG ++ + N
Sbjct: 612 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVN 653
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 22/184 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ + + N +I + + A +LE + K G P+SLSYN L+ + KK+D
Sbjct: 342 RKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMD 401
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+ + E + S G +PDI TY TLL + +EI+ ++ K C ++
Sbjct: 402 RAIEYLEIM-------VSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVL 454
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+ T+ ++D L G + YA + E+ ++ GL P Y +++ L
Sbjct: 455 I---TYNTVIDGLTKVGKTE----YAAELLEEMRRK-----GLKPDIITYSTLLRGLGCE 502
Query: 187 VDYD 190
D
Sbjct: 503 GKVD 506
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I ++I + + +A +I+E +E G PD ++YN+LI K+ ++D +
Sbjct: 141 DVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVL 200
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV-FEMKSCCNLILDRSTFT 133
E++ PD+ TY T+L + L+ +E++ +M+ C D T+T
Sbjct: 201 ERMS----------VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQREC--YPDVITYT 248
Query: 134 AMVDA 138
+++A
Sbjct: 249 ILIEA 253
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
+++ R + + N ++ + ++ ++ EA ++L+ +++ PD ++Y ILI A
Sbjct: 198 QVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCND 257
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+ M ++++ G K PD+ TY L+ G
Sbjct: 258 SGVGQAMKLLDEMRKKGCK-------PDVVTYNVLINGI 289
>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L + N++I A +A ++A ++ E + E GLEPD ++Y+ +I AC + KL + +
Sbjct: 183 LGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDY 242
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ +K G +S F+ TL+ + A+++ ++ ++ +MK+ D T
Sbjct: 243 FQAMKRLGIMPASSNFN-------TLISLYGKARNVVGIVRVLADMKN-FGCTPDSQTLD 294
Query: 134 AMVDALLYSGSIKVV 148
A+V A +G K V
Sbjct: 295 AVVRAYERAGQTKKV 309
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N V++A +A +D+ ++ +EK GL+ D SYNILI+ + K+ +++
Sbjct: 609 NCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKI-------AEMEA 661
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
K GF PD +TY T++ + +A D F+M ++ DR T+ +V A
Sbjct: 662 LFHKMQEEGFIPDRWTYNTMIRTYGYA-DYPDKAVDTFKMMQDSGIMPDRVTYVMLVAAF 720
Query: 140 LYSGSI 145
+G++
Sbjct: 721 EKAGNL 726
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 39/198 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I + + + EA ++ E +E KG++PD ++Y LIS + K+D +
Sbjct: 318 SVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTY 377
Query: 75 EQLKDNGQK---CS-------------------------SGGFHPDIFTYATLLMGFRHA 106
+++ NG K C+ S GF PD+ T+ TLL F
Sbjct: 378 DEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQ- 436
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
L S + VF+ + +R T+ +++ S GL+ + EI KR+
Sbjct: 437 NGLDSEVSGVFKEMKKSGYVPERDTYVSLIS------SYSRCGLFDQSM--EIYKRMI-E 487
Query: 167 PGLWPKPHLYVSMMHELA 184
G++P Y +++ LA
Sbjct: 488 AGIYPDISTYNAVLSALA 505
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + N++++ +A+ DEA +L+ +E G P ++YN LIS+ +K L
Sbjct: 280 FEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAA 339
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRS 130
E+++ G PD+ TY TL+ G A + + + EM ++ C L
Sbjct: 340 ELKEEMEVK-------GIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNL--C 390
Query: 131 TFTAMV 136
T+ A++
Sbjct: 391 TYNALI 396
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ N +I R EA ++ + + G EPD +++N L+ K + D +
Sbjct: 247 LDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGV 306
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++++ GG P + TY +L+ + L+ E+ EM+ + D T+T
Sbjct: 307 LKEME-------LGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEME-VKGIQPDVITYT 358
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
++ L +G I A+ + E+++ C
Sbjct: 359 TLISGLDRAGKIDA----AIGTYDEMLRNGC 385
>gi|302813796|ref|XP_002988583.1| hypothetical protein SELMODRAFT_42378 [Selaginella moellendorffii]
gi|300143690|gb|EFJ10379.1| hypothetical protein SELMODRAFT_42378 [Selaginella moellendorffii]
Length = 478
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 21/207 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKT 64
E R + NA+I+ A R+DEA + + E + ++++Y ILI K+
Sbjct: 132 ERTKRNSTMVTLAAANALIDGLCRAGRVDEALELVFERCKDKAMINAVTYGILIQGLCKS 191
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+++ + E++ +S G +PD TY +++ GF ++ LE +
Sbjct: 192 KRVEDGLRLLEEMS------TSRGLNPDAATYNSIVAGFCELDMVEQALEFFSNVTQGNK 245
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
D +V+ L SG L AL + E+ RV G P +Y M+ EL
Sbjct: 246 CAPDPVMIGTLVNGLCKSGR----SLQALELLEEM-DRV----GCQPSSQVYCLMIEELC 296
Query: 185 ARVDYD----IVKSPYRR-MWPDSTGT 206
+ D ++ R+ P +TGT
Sbjct: 297 NSGEADKACKLLHETLRKGRAPANTGT 323
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + NA+I A + + EA ++ E + +G+ P++++YN +I K +LD
Sbjct: 324 DVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA---- 379
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D ++ G PD+FT+ TL+ G+ AK + +E++ EM L+ + T+
Sbjct: 380 ---EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNT 435
Query: 135 MVDALLYSGSI 145
++ G +
Sbjct: 436 LIHGFCLVGDL 446
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI +++I+ + R+DEA Q+ S+ K P+ +++N LI+ K ++D +
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL--- 601
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
E + G++ G D Y TL+ GFR ++ L+I EM S
Sbjct: 602 ELFCEMGRR----GIVADAIIYITLIYGFRKVGNINGALDIFQEMIS 644
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 16/222 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +I+ A+RID+ ++L E +GL ++++YN LI L+ + +
Sbjct: 394 DVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLS 453
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ S G PDI T TLL G L+ LE+ M+ + LD S
Sbjct: 454 QQM-------ISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK-SKMDLDASHPFN 505
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
V+ + + +I + GL F E + P G+ P Y SM+ L + D
Sbjct: 506 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+ M S SP V + L+ G+VD L+
Sbjct: 566 TQMFVSMGSKS---FSPNVV--TFNTLINGYCKAGRVDDGLE 602
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 35 EAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
EA ++ E + +G+ PD+++Y+ +I K +LD + G K F P++
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA---TQMFVSMGSK----SFSPNV 581
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYAL 153
T+ TL+ G+ A + LE+ EM ++ D + ++ G+I AL
Sbjct: 582 VTFNTLINGYCKAGRVDDGLELFCEMGR-RGIVADAIIYITLIYGFRKVGNIN----GAL 636
Query: 154 CIFGEIVKR-------VCSN--PGLWPKPHL--YVSMMHELAARVDYDI 191
IF E++ N G W K L V+M+ +L V Y +
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGYQL 685
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
+M V+ R I YQ +E K + D S+NILI KL PF L
Sbjct: 85 LMGVVVRMERPDLVI-SLYQKME--RKQIRCDIYSFNILIKCFCSCSKL----PF--ALS 135
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--NLILDRSTFTAM 135
G K + G HPD+ T+ TLL G + L+ +M ++ C N++ TFT +
Sbjct: 136 TFG-KITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVV----TFTTL 190
Query: 136 VDALLYSGSI 145
++ L G I
Sbjct: 191 MNGLCREGRI 200
>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 418
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 32/170 (18%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ + +DE +++ +++ G++PD +Y++LI+ K K++
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMED 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
E++ DNG C +G PD+ TY TL+
Sbjct: 225 ANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
G DL+ +++ EM S L D+ T+T ++D G ++ Y
Sbjct: 285 GLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTTLIDGSCKEGDLETAXXY 333
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N ++ + + I A + +++ K GL P +S+N L++ IK LD +LK
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGF----RLK 194
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ Q + G PD++TY+ L+ G ++ E+ EM L+ + TFT ++D
Sbjct: 195 NAMQ---ASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLD-NGLVPNGVTFTTLIDG 250
Query: 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+G + + EI K++ S L P Y ++++ L + D
Sbjct: 251 HCKNGRVXLA--------MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 291
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTM 71
K + +V N++++ I A Q++ E E+G PD +YNI+I+ K + D T+
Sbjct: 358 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 417
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
N+ + G+ PD+FT+ TL+ G+ L S L++V M + D T
Sbjct: 418 VMNDAIMK--------GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE-YGIAPDTIT 468
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC-SNP 167
+ ++++ L +G + V F E++ + C NP
Sbjct: 469 YNSVLNGLCKAGKVNEVNE----TFQEMILKGCHPNP 501
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N+V+ +A +++E + E + KG P+ ++YNILI ++ K+
Sbjct: 465 DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM------- 517
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
E+ K S G HPD ++ TL+ GF DL+
Sbjct: 518 EEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 553
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N N I EA R+ EA ++++ + PD ++YN LI K M +
Sbjct: 220 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYL 279
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI----VFEMKSCCNLILDRS 130
++ + G C PD FTY T++ G+ +Q E+ VF+ + D+
Sbjct: 280 RRMMNQG--CL-----PDDFTYNTIIDGYCKISMVQEATELLKDAVFK-----GFVPDQV 327
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T+ ++++ L G ++ AL +F E + G+ P +Y S++ L
Sbjct: 328 TYCSLINGLCAEGDVE----RALELFNEAQAK-----GIKPDIVVYNSLVKGL 371
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I + EA L + +G PD +YN +I K + +
Sbjct: 255 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK---ISMVQEAT 311
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E LKD K GF PD TY +L+ G D++ LE+ E ++ + D + +
Sbjct: 312 ELLKDAVFK----GFVPDQVTYCSLINGLCAEGDVERALELFNEAQA-KGIKPDIVVYNS 366
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
+V L G I L+AL + E+ + C
Sbjct: 367 LVKGLCLQGLI----LHALQVMNEMAEEGC 392
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +IE + +++EA + I++ ++GL PD++S+N LI + L+
Sbjct: 500 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 559
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--------CCNLI 126
++L++ G ++ T+ TL+ F ++ +I EM S ++
Sbjct: 560 QKLEEKGYSATAD-------TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 612
Query: 127 LDRSTFTAMVDA--LLYSGSIKVVGLYALCIFGEIVKRVCSN 166
+D S TA VD + IK + ++ FG ++ + N
Sbjct: 613 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVN 654
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + ++EA ++ +A ++L+ + KG P+ ++YN++I+ + ++D F
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+L SS GF PD +Y T+L G AK + + E+ EM K+C + + TF
Sbjct: 239 NRL-------SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC---MPNEVTF 288
Query: 133 TAMVDALLYSGSIK 146
+V G ++
Sbjct: 289 DMLVRFFCRGGMVE 302
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NTI ++ A+R+D A ++L E ++K P+ +++N+L+S + +D +
Sbjct: 454 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 513
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
EQ+ ++G C+ P++ TY TLL G + + + LE++ + S + D T+
Sbjct: 514 LVEQMMEHG--CT-----PNLITYNTLLDGITNDCNSEEALELLHGLVS-NGVSPDIVTY 565
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVK--RVCSNPGLWPKPHLYVSMMHELAARVDYD 190
++++ L ++ E +K + + G+ PK +Y ++ L R + D
Sbjct: 566 SSIIGVLSREDRVE-----------EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTD 614
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI V++ A+R ++A ++L E V K P+ +++N I CI +K +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI--CILCQKGLI----- 406
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ ++ S G +I TY L+ GF + S LE+ + M N I + T
Sbjct: 407 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTG 466
Query: 135 MVDA 138
+ +A
Sbjct: 467 LCNA 470
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + ++EA ++ +A ++L+ + KG P+ ++YN++I+ + ++D F
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+L SS GF PD +Y T+L G AK + + E+ EM K+C + + TF
Sbjct: 239 NRL-------SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC---MPNEVTF 288
Query: 133 TAMVDALLYSGSIK 146
+V G ++
Sbjct: 289 DMLVRFFCRGGMVE 302
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NTI ++ A+R+D A ++L E ++K P+ +++N+L+S + +D +
Sbjct: 454 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 513
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
EQ+ ++G C+ P++ TY TLL G + + LE++ + S + D T+
Sbjct: 514 LVEQMMEHG--CT-----PNLITYNTLLDGITKDCNSEEALELLHGLVS-NGVSPDIVTY 565
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVK--RVCSNPGLWPKPHLYVSMMHELAARVDYD 190
++++ L ++ E +K + + G+ PK +Y ++ L R + D
Sbjct: 566 SSIIGVLSREDRVE-----------EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTD 614
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI V++ A+R ++A ++L E V K P+ +++N I CI +K +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI--CILCQKGLI----- 406
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
EQ ++ S G +I TY L+ GF + S LE+ + M N I + T
Sbjct: 407 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTG 466
Query: 135 MVDA 138
+ +A
Sbjct: 467 LCNA 470
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 79/153 (51%), Gaps = 19/153 (12%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + + +++ R+ +A +++ VE G +PD ++YN +I + KTK+++
Sbjct: 254 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 313
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILD 128
F ++++ G P++ TY L+ G ++ D LL + + K N+I
Sbjct: 314 DFFKEIERK-------GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI-- 364
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
T++A++DA + +G + L A +F E+V+
Sbjct: 365 --TYSALLDAFVKNGKV----LEAKELFEEMVR 391
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 52/230 (22%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
RIDEA Q+ + V KG D +SYN LI+ K K+++ M ++ G
Sbjct: 413 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 472
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ G PDI+TY LL G +L+ L ++FE
Sbjct: 473 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL-VIFEDMQK 531
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
+ LD T+T ++ + +G ++ A +F + S GL P Y +MM
Sbjct: 532 REMDLDIVTYTTVIRGMCKTGKVE----EAWSLFCSL-----SLKGLKPDIVTYTTMMSG 582
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLA 232
L + V++ Y +M ++ G + + L+DG + L+
Sbjct: 583 LCTKGLLHEVEALYTKM-------------KQEGLMKNDCTLSDGDITLS 619
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 34 DEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D A+ +L +E+G LEP L YN +I K K +D + ++++ + G P+
Sbjct: 852 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEME-------TKGIRPN 904
Query: 93 IFTYATL---LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
+ TY++L L + D LL + E K + D TF+A++DA + G +
Sbjct: 905 VVTYSSLISCLCNYGRWSDASRLLSDMIERK----INPDVFTFSALIDAFVKEGKL---- 956
Query: 150 LYALCIFGEIVKR 162
+ A ++ E+VKR
Sbjct: 957 VEAEKLYDEMVKR 969
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E + +H + + N +I+ + +R++E ++ E ++GL ++++YNILI +
Sbjct: 999 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 1058
Query: 65 KKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
D+ F E + D G P+I TY TLL G L+ + +VFE
Sbjct: 1059 GDCDMAQEIFKEMVSD--------GVPPNIMTYNTLLDGLCKNGKLEKAM-VVFEYLQRS 1109
Query: 124 NLILDRSTFTAMVDALLYSGSIK 146
+ T+ M++ + +G ++
Sbjct: 1110 KMEPTIYTYNIMIEGMCKAGKVE 1132
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + R + N +IE +A ++++ + + ++ KG++PD ++YN +IS C K
Sbjct: 1104 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 1163
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +D G P+ Y TL+ D ++ E++ EM+S C
Sbjct: 1164 GSKEEADALFKEMKED--------GTLPNSGCYNTLIRARLRDGDREASAELIKEMRS-C 1214
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
D ST +V +L+ G +
Sbjct: 1215 GFAGDASTI-GLVTNMLHDGRL 1235
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 19/135 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I+ +A D A +I E V G+ P+ ++YN L+ K KL+ M
Sbjct: 1044 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 1103
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-----DR 129
E L+ P I+TY ++ G A ++ ++ CNL L D
Sbjct: 1104 EYLQ-------RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF------CNLSLKGVKPDV 1150
Query: 130 STFTAMVDALLYSGS 144
+ M+ GS
Sbjct: 1151 VAYNTMISGFCRKGS 1165
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +A+I+A + ++ EA ++ E V++ ++P ++Y+ LI+ +LD
Sbjct: 939 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 998
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + S PD+ TY TL+ GF K ++ +E+ EM S L+ + T+
Sbjct: 999 EFM-------VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM-SQRGLVGNTVTYNI 1050
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ L +G + A IF E+V + G+ P Y +++ L
Sbjct: 1051 LIQGLFQAGDCDM----AQEIFKEMV-----SDGVPPNIMTYNTLLDGL 1090
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 54/212 (25%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I+ +A +D+A + ++ G+ PD +YNIL+ +L+ +
Sbjct: 467 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 526
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
E ++ C +G G PDI TY T++ G
Sbjct: 527 EDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL-CT 585
Query: 107 KDLQSLLEIVFE-------MKSCCNLILDRSTFTA-MVDALLYSGSIKVVGLYALCIFGE 158
K L +E ++ MK+ C L T +A ++ +L G YA + +
Sbjct: 586 KGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCG-------YAPSLLKD 638
Query: 159 IVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
I VC +S++ + + YD
Sbjct: 639 IKSGVCKKA---------LSLLRAFSGKTSYD 661
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N ++E E +++DEA ++LE + +G PD ++YN I K ++D F
Sbjct: 146 NIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFL 205
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
++ PD+ +Y T++ G + DL S ++ M + C D T+
Sbjct: 206 ARMP----------VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGC---TPDVVTY 252
Query: 133 TAMVDALLYSGSI-KVVGL 150
++++D G + + +GL
Sbjct: 253 SSLIDGFCKGGEVERAMGL 271
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
+ H + +++ +A+R +A ++L+ + +KG P+ +YN+++ + +KLD
Sbjct: 105 KNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLD 164
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
E++ + G+ PD+ TY + + G + + + M + D
Sbjct: 165 EAKKMLEEM-------AVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP----VTPD 213
Query: 129 RSTFTAMVDALLYSGSI 145
++T +++ L SG +
Sbjct: 214 VVSYTTVINGLCKSGDL 230
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 44/234 (18%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILI-SACIKTK 65
+ R + + + NA I+ +A+R+ +A + + VE+G P++ SY++LI + T
Sbjct: 310 MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTV 369
Query: 66 KLDVTMP---FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--K 120
LD F+E + PD+F Y +L + + L+I +M K
Sbjct: 370 LLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEK 429
Query: 121 SCCNLIL-------------------------------DRSTFTAMVDALLYSGSIKVVG 149
+CCN++ D T+ +VDA+ G
Sbjct: 430 NCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAA-- 487
Query: 150 LYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW-PD 202
AL +F E VK C P + L ++HE A Y + R W PD
Sbjct: 488 --ALELFEEAVKGGCV-PDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPD 538
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ N N ++ R D+A + E ++K +PD+ ++ IL+ ++ +L+
Sbjct: 3 YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDR 129
++K+ G C PD Y L+ G+ AKD + + EM C ++
Sbjct: 63 KLLGRMKEMG--CV-----PDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVV-- 113
Query: 130 STFTAMVDAL 139
T+T +VD L
Sbjct: 114 -TYTNIVDGL 122
>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
Length = 970
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 43/234 (18%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
+E+V R+ K + N +IE +A +D+A+++LE + GL PD+ +Y LIS
Sbjct: 522 DEMVERK-IKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCS 580
Query: 64 TKKLDVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFT 95
T ++ F + L K C G G + D+
Sbjct: 581 TGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVC 640
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
+A L+ G +D++ L ++ +M L D +T+M+DA GS K G C+
Sbjct: 641 HAVLIDGAMKQQDMKRLFGLLKKMYD-QGLRPDSVIYTSMIDAYSKEGSFKKSG---ECL 696
Query: 156 FGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISP 209
+V C +P Y + M+ L + D + +M T ISP
Sbjct: 697 -DLMVTEKC-----FPNVVTYTAFMNGLCKVGEIDRAGHLFEKML---TANISP 741
>gi|443895302|dbj|GAC72648.1| FOG: PPR repeat [Pseudozyma antarctica T-34]
Length = 1376
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 39 ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98
+ E+V++G++ + YN LI + +D + EQ++D G PD +TY
Sbjct: 670 LAEAVDRGIKLRASDYNSLIDTYARRSDIDTALSIFEQMRDV-------GIQPDKYTYTI 722
Query: 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGE 158
L+ GF +D + + M + + DR T+ A+++ + SG V G A+ +FG
Sbjct: 723 LIQGFALRRDPDAAAHTLRAMVAAGH-TPDRITYAALLNCYVESG---VYGA-AIRLFGW 777
Query: 159 IVKR 162
+ +R
Sbjct: 778 MQRR 781
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+N + N + +++I+ ++ RI A+++ ++ + G P+ ++YNI++ A K +
Sbjct: 384 MNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQL 443
Query: 67 LDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+D + FN + G P++ +Y L+ G+ +K + + + EM NL
Sbjct: 444 VDKAIELFNLMFER--------GLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRR-NL 494
Query: 126 ILDRSTFTAMVDALLYSGSI 145
+ D T+ ++D L SG I
Sbjct: 495 VPDSVTYNCLIDGLCKSGRI 514
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 18/145 (12%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA-CIK 63
++V+R + LN N +I+A + + +A+ + +E+G PD +++N L+S C+
Sbjct: 278 DMVDR-NVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLY 336
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM---K 120
++ +L D +C G PD+++Y L++G+ + L + +M K
Sbjct: 337 NDVVEA-----RKLFDTFAEC---GITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK 388
Query: 121 SCCNLILDRSTFTAMVDALLYSGSI 145
N++ T+++++D L SG I
Sbjct: 389 LAPNIV----TYSSLIDGLCKSGRI 409
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I +++RIDEA + E + + L PDS++YN LI K+ ++ + D
Sbjct: 467 NILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHD 526
Query: 80 NGQKCSSGGFHPDIFTYATLLMGF 103
GG D+ TY L F
Sbjct: 527 -------GGPPVDVITYNILFDAF 543
>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 35 EAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93
EA ++ + ++K G EP++++YN+LI K ++ ++++ + G PDI
Sbjct: 194 EAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMR-------AKGIFPDI 246
Query: 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYAL 153
+TY +LL G L +E+ E++ L L+ T+TA++ L G + A
Sbjct: 247 YTYTSLLHGECIFGKLDDAVELFNEVRQ-KGLPLNVVTYTAIISGLSKEGRSE----EAF 301
Query: 154 CIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ E+ + GL P +Y S++ L
Sbjct: 302 KLYDEM-----TEAGLTPDDRVYTSLVSSL 326
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 36 AYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E + E G+EPD ++YNIL+ A K++++ + ++K G CS P I
Sbjct: 355 AFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRG--CS-----PTIQ 407
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMK 120
TY T++ GF D++ + V EMK
Sbjct: 408 TYITIIDGFMKTGDVRMAYKTVSEMK 433
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 15 LNTIVMNAVIEASREAQRID--EAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
+N + N +++ AQR D EAY I++ + ++G PD SY ++AC K +
Sbjct: 544 MNNYIFNTLLDGW--AQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKAT 601
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
E++K P++ TY L+ G+ + L EMK+ LI D+
Sbjct: 602 ETIEEMKQQ-------DLQPNLQTYTILIHGWTSVSHPEKALICYDEMKA-AGLIPDKPL 653
Query: 132 FTAMVDALLYSGSI 145
+ +V +LL +I
Sbjct: 654 YYCIVTSLLSKAAI 667
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 33/164 (20%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
L I+M+ EAQ ++ +++ ++ GL P +++Y LI+ K K+ + F
Sbjct: 265 LYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFC 324
Query: 75 EQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRHA 106
+++K G + S G PD TY LL F +
Sbjct: 325 KEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKS 384
Query: 107 KDLQSLLEIVFEMKS--CCNLILDRSTFTAMVDALLYSGSIKVV 148
+ + ++++ MK+ C I T+ ++D + +G +++
Sbjct: 385 RQMTRAIQLLGRMKTRGCSPTI---QTYITIIDGFMKTGDVRMA 425
>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L + N++I A +A D+A +++E + E+ L PDS++Y+ +I AC + KL + +
Sbjct: 184 LGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEALSW 243
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTF 132
++K K +S F+ TL+ + AKD++ ++ ++ EMK C D T
Sbjct: 244 FAEMKRLEIKPASSNFN-------TLISLYGKAKDVEGIVRVITEMKKYGCK--PDWQTL 294
Query: 133 TAMVDALLYSGSIKVV 148
A V A +G IK V
Sbjct: 295 DAAVRAYDRAGLIKDV 310
>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
Length = 455
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 6 EIVNREHWK---LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISAC 61
+++++ WK N + ++EA+ + + ++EA ++L E + KG +P+ +SYN+L++
Sbjct: 76 QLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLVSYNVLLTGL 135
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K + + + F L S GF+P++ +Y +L H + +++ EM S
Sbjct: 136 CKEGRTEEAIRFFRDL-------PSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDS 188
Query: 122 CCNLILDRS----TFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
+RS T+ ++ +L + G I+ +A + E+V+
Sbjct: 189 -----EERSPSLVTYNILIGSLAFHGRIE----HAFEVLDEMVR 223
>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
Length = 475
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
V++ ++ R+ A Q+L+ + + G++ ++L YN L+ A + K D + +++ G
Sbjct: 73 VVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEG 132
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
P + TY L+ G A+D+ +E VFE NL D ++++++A
Sbjct: 133 -------IEPTVGTYTILVDGLSAARDITK-VEAVFEEMKSKNLSGDVYFYSSVINAYCR 184
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+G+++ A +F E C G+ P H Y ++++
Sbjct: 185 AGNVR----RASEVFDE-----CVGNGIEPNEHTYGALIN 215
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA-CIKT 64
I+ + +L+ N + R A R+DEA +L +EKG+ P+ +SY LIS C +
Sbjct: 267 IMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEG 326
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
++ F E + G P + TY ++ G+ ++ EM+
Sbjct: 327 DMVEARRLFREM--------AGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEK-KG 377
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L+ D ++ A+V +G + V AL +F E+ +R G P Y +++ LA
Sbjct: 378 LVPDIYSYAALVHGHCVNGKVDV----ALRLFEEMKQR-----GSKPNLVAYTALISGLA 428
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 21/128 (16%)
Query: 17 TIVMNAVIEAS--REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
++M+ I+ REA+R E +KGL PD SY L+ K+DV +
Sbjct: 351 NVMMDGYIKKGSIREAERFKN-----EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLF 405
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRST 131
E++K G K P++ Y L+ G AK+ +S E F++ L D +
Sbjct: 406 EEMKQRGSK-------PNLVAYTALISGL--AKEGRS--EEAFQLYDNMLGDGLTPDDAL 454
Query: 132 FTAMVDAL 139
++A+V +L
Sbjct: 455 YSALVGSL 462
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT N V+ A R+DEA + + ++K G P+ +YN++ K + +
Sbjct: 264 NTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEML 323
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLM--GFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E++ S G P+ T+ T+L G R +D + ++ MKS C + L R T+
Sbjct: 324 EEM-------SRSGCTPNRVTWNTMLAVCGKRGMEDY--VTRVLNGMKS-CGVELSRDTY 373
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++ A GS YA ++ E++ + G P Y ++++ L+ + D+
Sbjct: 374 NTLISAYGRCGSRT----YAFKMYDEMI-----SSGFTPCLTTYNALLNVLSRQGDWSTA 424
Query: 193 KSPYRRM 199
+S +M
Sbjct: 425 QSIVSKM 431
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+EPD + + +I+AC + LD + F E LK G P + TY LL F
Sbjct: 155 GVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHV-------PCVVTYNALLQVFGK 207
Query: 106 AKDLQSLLEIVFEMK-SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR-- 162
A + L ++ EM+ S C DA+ Y+ ++ G YA F E +
Sbjct: 208 AGNYTEALRVLKEMEDSGCQ-----------PDAVTYN---ELAGTYARAGFFEEAAKCL 253
Query: 163 -VCSNPGLWPKPHLYVSMMHELA--ARVD 188
++ GL P Y ++M A RVD
Sbjct: 254 DTMTSKGLLPNTFTYNTVMTAYANVGRVD 282
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ NA+++ +A EA ++L+ +E G +PD+++YN L + F E+
Sbjct: 196 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAG-------FFEE 248
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--------SCCNLIL- 127
+S G P+ FTY T++ + + + L + MK + NLI
Sbjct: 249 AAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFG 308
Query: 128 ---DRSTFTAMVDAL 139
+S FTAM++ L
Sbjct: 309 MLGKKSRFTAMLEML 323
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N+V+ +A + ++ + E+ VEKG P+ ++YNIL + K K++ +
Sbjct: 495 DVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLV 554
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ + G PD ++AT++ GF + DL+ ++ M + +T+
Sbjct: 555 DEILNK-------GITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNI 607
Query: 135 MVDAL 139
M++A
Sbjct: 608 MINAF 612
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N I+ + A +L+SV +GL PD ++YN LI K + +
Sbjct: 250 NLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYL 309
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+L +GG PD FTY TL+ G+ LQ+ E + + C + D T+ +
Sbjct: 310 HKL-------VNGGLEPDGFTYNTLIDGYCKMGMLQN-AEKILQGAICKGFVPDEFTYCS 361
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
+++ L + I AL +F + + GL P LY
Sbjct: 362 LINGLCQNDEID----RALALFNAALGK-----GLKPTVILY 394
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N VI + + +A ++ +++ KG PD ++N LI K K++ T+ ++
Sbjct: 430 NLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKM-- 487
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
S G PD+ TY ++L G A +DL E + E K C + ++ T+ +
Sbjct: 488 -----WSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVE-KGC---VPNKITYNILT 538
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
++L +G + AL + EI+ N G+ P + +++ A D +
Sbjct: 539 ESLCKAGKVN----EALDLVDEIL-----NKGITPDTVSFATIISGFANNGDLKGAYQLF 589
Query: 197 RRM 199
RRM
Sbjct: 590 RRM 592
>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740
gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana]
gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana]
gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 29 EAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+A RI+E +IL+ + + L +PD +Y +I + LD ++ ++++ + K
Sbjct: 275 KAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIK---- 330
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
PD+ Y TL++G ++ E+ EMK +++DR + +++ + G ++
Sbjct: 331 ---PDVMAYGTLVVGLCKDGRVERGYELFMEMKG-KQILIDREIYRVLIEGFVADGKVRS 386
Query: 148 V----------GLYA-LCIFGEIVKRVCS 165
G A + I+ ++K +CS
Sbjct: 387 ACNLWEDLVDSGYIADIGIYNAVIKGLCS 415
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
+LN+ V NA+I R+ EA L + K G P +SYNILI K K
Sbjct: 461 ELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASA 520
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
F +++ +NG K PD+ TY+ LL G + + LE+
Sbjct: 521 FVKEMLENGWK-------PDLKTYSILLCGLCRDRKIDLALEL 556
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
++NA +EA ++ +++ + E+ G+ P+ +YN+LI K K+ + F + +
Sbjct: 120 LLNAFVEA-KQWVKVESLFAYFETA--GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMW 176
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--------SCCNLILD 128
G F PD+F+Y+T++ A L LE+ EM +C N+++D
Sbjct: 177 KEG-------FKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILID 227
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
+E +K + + VI +A ++D+A ++ + + E+G+ PD YNILI +K K
Sbjct: 177 KEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHK 236
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
M ++L ++ +P++ T+ ++ G + L+I MK D
Sbjct: 237 TAMELWDRLLEDSS------VYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQ-NEREKD 289
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
T+++++ L +G++ A +F E+ +R S
Sbjct: 290 LYTYSSLIHGLCDAGNVD----KAESVFNELDERKAS 322
>gi|357146655|ref|XP_003574066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Brachypodium distachyon]
Length = 795
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 18 IVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ +++A EA +++ IL E VEKG++P++++Y+++I K + + F +
Sbjct: 555 VTYTTLMDALSEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGLCKELRFHDAIHFLDN 614
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ G + D TY TL+ GF +D+Q I M C ++ T+ ++
Sbjct: 615 MHGE-------GVNADPVTYNTLIQGFCEVQDIQMAFHIHDRMVY-CGIVPTPVTYNFLI 666
Query: 137 DALLYSGSI 145
+ L G +
Sbjct: 667 NVLCLKGQV 675
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E V E KL T+ N++I R E +I++ + +G+EPD ++Y ILI+ ++
Sbjct: 297 ERVTEEGMKLETVTYNSLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTILIAGHCES 356
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
++ M + D G +I TY+ LL
Sbjct: 357 GDVEEGMKIRNDILDQ-------GLQLNIVTYSVLL 385
>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 376
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ +V NA++ +I + +++ E + S+NI++ K+D + E
Sbjct: 24 DAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWE 83
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+K++ GF D TY L+ GF + L V EM +LD ++AM
Sbjct: 84 LMKES-------GFVEDSITYGILVHGFCKNGYIDKSLH-VLEMAEQKGGVLDAFAYSAM 135
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
++ L ++ AL + +++K C P H+Y ++++ L ++
Sbjct: 136 INGLCKEANLD----RALSVLNDMIKSGCK-----PNVHVYNTLINGLVGASKFEDAIRV 186
Query: 196 YRRM 199
+R M
Sbjct: 187 FREM 190
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 2 FEENEIVNRE----HWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNI 56
FE+ V RE H I N +I + + EAY ++ E ++KGL+P ++Y++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
L+ +++ + Q+ +S GF PD+ + L+ G +Q L +
Sbjct: 240 LMKGLCLDHRVERALQLWNQV-------TSKGFKPDVQMHNILIHGLCSVGKMQLALSLY 292
Query: 117 FEM 119
F+M
Sbjct: 293 FDM 295
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 101/225 (44%), Gaps = 25/225 (11%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPFNEQL 77
+N +I + R+ A+ +L + K G +PD+ ++ LI C++ K D F++ +
Sbjct: 107 LNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMI 166
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
+ GF P++ TY TL+ G + + + ++ M+ N D +T+++D
Sbjct: 167 GE--------GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ-GNCQPDVVVYTSIID 217
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYR 197
+L + A +F ++V + G+ P Y S++H L ++ V +
Sbjct: 218 SLCKDRQVT----EAFNLFSKMVGQ-----GISPDIFTYTSLIHSLCNLCEWKHVTTLLN 268
Query: 198 RMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242
+M I P+V + +++A +G++ A D + I R
Sbjct: 269 QMI---NSKIMPDVVIFS--TVVDALCKEGKITEAHDVVDMMIIR 308
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
+ N I N +I + QR+D+A + E + +K L P++++YN L+ C + D
Sbjct: 345 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIA 404
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F+E + + G PD+ TY LL L + ++ ++ N+ D
Sbjct: 405 LFHEMV--------AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEG-SNMDPDIQI 455
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+T ++D + +G ++ A IF + S+ GL P Y M++ L R
Sbjct: 456 YTIVIDGMCRAGELEA----ARDIFSNL-----SSKGLRPNVRTYTIMINGLCRR 501
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CI 62
N+++N + + ++ + V++A + +I EA+ +++ + +G+EP+ ++YN L+ C+
Sbjct: 268 NQMINSKIMP-DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCL 326
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+++ + F+ + + G+ P++ +Y TL+ G+
Sbjct: 327 QSEMDEAVKVFDTMVHN--------GYAPNVISYNTLINGY 359
>gi|293334951|ref|NP_001170632.1| uncharacterized protein LOC100384682 [Zea mays]
gi|238006488|gb|ACR34279.1| unknown [Zea mays]
gi|413925463|gb|AFW65395.1| hypothetical protein ZEAMMB73_565010 [Zea mays]
Length = 462
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTK 65
+ +R H L+T +MN + + +D A +L +++ GL PD ++YN L++A +
Sbjct: 2 VRSRGHLALSTRLMNVGLASLCRGGWLDRAESVLVDAIRLGLPPDVVTYNTLLAAYCRVD 61
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
LD + ++++ G + PD TY +L+ G + L++ EM +
Sbjct: 62 GLDAGLAVVHRMREAGVR-------PDAVTYNSLITGADRSGLTVRALDLFDEMLR-SGV 113
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
D ++ A++ L SG + +A +F ++ R G+ P Y +++ L
Sbjct: 114 APDSWSYNALMHCLFRSGHPE----HAYRVFADMADR-----GVAPCATTYNTLLDGL 162
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N A+++ +A ++ EA +L+S+ +G EP+ + Y+ LI C K KLD
Sbjct: 378 NVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEA---- 433
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NLILDRST 131
+++ +C G+ P+++TY++L+ K L L+++ +M SC N+++
Sbjct: 434 QEVFTTMLEC---GYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVI---- 486
Query: 132 FTAMVDALLYSG 143
+T M+D L G
Sbjct: 487 YTEMIDGLCKVG 498
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + VI A ++++A+Q+ + +++ G+ PD Y LI + K F
Sbjct: 221 DTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAG-------FI 273
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM---KSCCNLILDRST 131
EQ ++ + G P++ TY L+ + ++ + E V+EM K C I+ T
Sbjct: 274 EQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANE-VYEMMLSKGCTPNIV---T 329
Query: 132 FTAMVDALLYSGSIK 146
+TA++D L +G I+
Sbjct: 330 YTALIDGLCKAGKIE 344
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ ++AY ++ E + KG PD+ +Y+ +I K++ +++K N G
Sbjct: 202 KFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRN-------GIA 254
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMK--SCCNLILDRSTFTAMVDALLYSGSI 145
PD++ Y TL+ F A ++ EM+ C ++ T+TA++ A L S +
Sbjct: 255 PDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVV---TYTALIHAYLKSRKV 308
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 227 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL------- 279
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD FTY TL+ G DL + E M N+ LD +TA
Sbjct: 280 KQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQ-ENIRLDDVAYTA 338
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 339 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGD 383
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 32/164 (19%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD- 68
W L + + N ++ +DE +++ + + G++PD +Y++LI+ K K+D
Sbjct: 152 WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDG 211
Query: 69 VTMPFNEQLKD----NG--------QKCSSG---------------GFHPDIFTYATLLM 101
F+E L NG C +G PD+ TY TL+
Sbjct: 212 ANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 271
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
G DL+ +++ EM S L D+ T+T ++D G +
Sbjct: 272 GLCKKGDLKQAHDLIDEM-SMKGLKPDKFTYTTLIDGCCKEGDL 314
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G P
Sbjct: 139 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQP 191
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + + EM L+ + TFT ++D +G + +
Sbjct: 192 DVYTYSVLINGLCKESKMDGANGLFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDLA--- 247
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 248 -----MEIYKQMLSQS-LLPDLITYNTLIYGLCKKGD 278
>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g14770, mitochondrial-like, partial [Cucumis
sativus]
Length = 697
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I +++I + + +A+++L V K P+ +Y IL+ K D+ +
Sbjct: 163 NVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLY 222
Query: 75 EQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRHA 106
++K G K +SGG PD+ Y L+ GF +
Sbjct: 223 SKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKS 282
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
+ S L + EM S N++ D TF +++ L G +Y+
Sbjct: 283 GKVSSALNLAQEMTS-KNVVFDIVTFNVLINCLFKLGKSDTESIYS 327
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 38/191 (19%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMP 72
K N +++A + + + R++EA +++ + G L+PD ++Y L+ +K+ K+ +
Sbjct: 231 KDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALN 290
Query: 73 FNEQL-----------------------KDNGQKCSSG----GFHPDIFTYATLLMGFRH 105
+++ K + + S G PD+ TY T+L G
Sbjct: 291 LAQEMTSKNVVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNTMLNGNFK 350
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+ S LE+ EMKS LI + T M++ L +G ++ A+ I E+V
Sbjct: 351 KGNWTSALELWNEMKS-RKLIPNAITCNIMINGLCEAGRME----NAIDILKEMVLM--- 402
Query: 166 NPGLWPKPHLY 176
GL+P Y
Sbjct: 403 --GLYPTSTTY 411
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++I+ ++ RI A Q+++ + ++G+ P+ L+YN +I A KT ++D +
Sbjct: 369 NVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALI 428
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMG 102
+ KD G P ++TY L+ G
Sbjct: 429 TKFKDQ-------GIQPSMYTYTILIDG 449
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
E+ K + N +++ + +++ E + + K G+ PD ++YN L+ K+++
Sbjct: 259 ENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNT 318
Query: 70 TMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
FN + GG +PDI +Y L+ GF K + + + EM C N+I +
Sbjct: 319 AKSIFNTM--------AQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMH-CKNIIPN 369
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T+ +++D L SG I YAL + ++ R G+ P Y S++ L
Sbjct: 370 VVTYNSLIDGLSKSGRIS----YALQLVDQMHDR-----GVPPNILTYNSIIDAL 415
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 34/193 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-F 73
+ + N++++ + ++ A I ++ + G+ PD SYNILI+ K KK+D M F
Sbjct: 299 DVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLF 358
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS--- 130
NE N P++ TY +L+ G + + L++V +M DR
Sbjct: 359 NEMHCKN--------IIPNVVTYNSLIDGLSKSGRISYALQLVDQMH-------DRGVPP 403
Query: 131 ---TFTAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
T+ +++DAL + + K + L I K + G+ P + Y ++ L
Sbjct: 404 NILTYNSIIDALFKTHQVDKAIAL--------ITKF--KDQGIQPSMYTYTILIDGLCKV 453
Query: 187 VDYDIVKSPYRRM 199
YDI + Y M
Sbjct: 454 EGYDITVNTYNVM 466
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTM 71
+LN ++ N VI + + +++A+ + E V KG+ P+ ++Y+ LIS KL D
Sbjct: 192 QLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAID 251
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
FN+ + +N PD +T+ L+ GF + ++ + VF M +I D T
Sbjct: 252 LFNKIILEN--------IKPDGYTFNILVDGFCKDRKMKE-GKTVFAMMMKQGIIPDVVT 302
Query: 132 FTAMVDA 138
+ +++D
Sbjct: 303 YNSLMDG 309
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIK 63
+E+ + H + + ++ +I +A R+ +A S++K G + D+ +YNILI +
Sbjct: 336 HEMADHGH-RPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCR 394
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
KKL E++K G PD++TY TLL G A D ++ E++ M
Sbjct: 395 KKKLHEAYELLEEMK-------GVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHM 443
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + ++ +A + DEA +I S+++ ++P+++ YN LI K++++DV +
Sbjct: 451 SVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLF 510
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+++++ ++ TY LL G + K + E++ M+
Sbjct: 511 DEMREKNVPA-------NVTTYNALLKGLQDKKMAEKAFELMDRMR 549
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 32/172 (18%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILE---SVEKGLEPDSLSYNILISACIKT 64
+ +E N I MN +I R+ A + +V ++++Y+ L SA +
Sbjct: 266 MEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFREKRTVWPEARGNAVTYSTLASAFLHC 325
Query: 65 KKLDVTMPFNEQLKDNGQK----------------------CSSG------GFHPDIFTY 96
+D+ M ++ D+G + C++ GF D Y
Sbjct: 326 NNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAY 385
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
L+ GF K L E++ EMK L D T+ ++ L +G V
Sbjct: 386 NILIGGFCRKKKLHEAYELLEEMKG-VGLQPDVYTYNTLLSGLCKAGDFSAV 436
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + A+++ ++++A I V++G+EP+ YNI+I+ K K++D M
Sbjct: 214 KPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMN 273
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+++ +PD+ TY L+ G + + LE+V EM+S + D T+
Sbjct: 274 LFKEM-------HWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTV-DIITY 325
Query: 133 TAMVDAL 139
+++ AL
Sbjct: 326 NSLLHAL 332
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 12 HWKL---NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKL 67
HWK + + N +I+ + +I + ++++ + G D ++YN L+ A K L
Sbjct: 279 HWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHL 338
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
D + +++KD G P++ TY TL+ G
Sbjct: 339 DQAITLVKEIKDQ-------GIQPNVCTYTTLIDGL 367
>gi|225454807|ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Vitis vinifera]
Length = 457
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA----CIKTKKLDVT 70
+ + N ++ A ID AY ++ + E G+ PD ++YN LI+A C+ ++ LD+
Sbjct: 41 DVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLDL- 99
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSLLEIVFEMKSCCNLILDR 129
F E L+ G PD+++Y +L+ F+ K ++ VF+ NL+
Sbjct: 100 --FEEMLRT--------GIRPDVWSYNSLMHCFFKLGKPDEA--NRVFQDIILTNLLPSS 147
Query: 130 STFTAMVDALLYSG 143
STF M++ L +G
Sbjct: 148 STFNIMINGLCNNG 161
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 37 YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96
Y+ L+ +G P+ ++YNILI+ K++KL+ +L ++G PD TY
Sbjct: 170 YRYLQ--RQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNV-------PDAITY 220
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
T++ ++ + EI EMKS D ++ A++ AL +G ++
Sbjct: 221 TTVMKCCFRSRQFEQGFEIFSEMKS-KGYAFDAFSYCAVIAALTKTGRLE 269
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILIS 59
IF E + + + + AVI A + R++EA I+E + + ++ D +SYN +++
Sbjct: 239 IFSE---MKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMN 295
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE 114
+ KL+ T ++++++G +C D +T+ L+ G A +++ L
Sbjct: 296 LYCRNGKLEATYKLLDEIEEHGLEC-------DEYTHTILIDGLCKAGNVEGALR 343
>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Cucumis sativus]
Length = 481
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNI 56
+FE E+ N ++KL+ + +I+ +A +++ A++ + + ++GL+P+ ++ NI
Sbjct: 357 LFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNI 416
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I + +++D E++ +K G PDI TY TLL GF + L+ ++ ++
Sbjct: 417 MIHGFCRVEQVDKANILFEKM----EKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLL 472
Query: 117 FEM 119
+M
Sbjct: 473 HKM 475
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+ +A +L + ++KG PD + YN+LI+ K ++D ++
Sbjct: 295 NVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALL 354
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CC--NLILDRST 131
++ SGG PD+ TY++++ G + L ++ +KS C ++IL
Sbjct: 355 -------RRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVIL---- 403
Query: 132 FTAMVDALLYSGSI 145
++ ++D L +G +
Sbjct: 404 YSTLIDGLCKAGKV 417
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 10 REH-WKLNTIVMNAVIEA---SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
R+H + N + N++I+ + E R E ++ ++SVE P ++YN L+ +T
Sbjct: 106 RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVE--CSPSMVTYNTLLDGLFRTG 163
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCN 124
KL+ M +++ D P++ TY+ L+ G A + +E++ MK+ C+
Sbjct: 164 KLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCS 223
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
D T+T +VD L KV + E+++ + + G P Y S++H L
Sbjct: 224 --PDVITYTILVDGLCKES--KVAAAW------EVLREM-LDAGCVPNLVTYNSLLHGLC 272
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK------GLEPDSLSYNILIS 59
E + R + + + N +I +R+D A +LE + G D+++Y+ LI
Sbjct: 495 EEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLID 554
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K ++ + + +++ DNG PD TY+ LL G + +KDL L +V +
Sbjct: 555 GLCKAGRVAEALDYFQEMIDNG-------VIPDHITYSILLEGLKKSKDLHELRHLVLD 606
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA 60
F+ E++ + + + + +I+ +A R+DEA+ +L V G P +++YN LI
Sbjct: 421 FDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 480
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
LD + E+++ + C+ P TY L+ G + + S + ++ + K
Sbjct: 481 LCDLNHLDEAIELVEEMERS--NCA-----PSAVTYNILIHGMCRMERVDSAVVLLEQAK 533
Query: 121 SCC----NLILDRSTFTAMVDALLYSGSI 145
+ C LD +++++D L +G +
Sbjct: 534 ARCVAAGGTALDTIAYSSLIDGLCKAGRV 562
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I+ +A+R +A + +++ G+ D++ Y L+S K K+LD +
Sbjct: 43 NVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAIL 102
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-CNLILDRSTFT 133
+++D+ G P++ TY +L+ G + E+ MKS C+ + T+
Sbjct: 103 HEMRDH-------GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSM--VTYN 153
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKR 162
++D L +G ++ A+ +F E++ R
Sbjct: 154 TLLDGLFRTGKLE----RAMALFQEMLDR 178
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K + + ++VI + R+DEA ++L V+ +G PD + Y+ LI K K+D
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
E + +G C + D+ TY+TL+ G A
Sbjct: 423 LYEVMAGDG--CDA-----DVVTYSTLIDGLCKA 449
>gi|222612526|gb|EEE50658.1| hypothetical protein OsJ_30888 [Oryza sativa Japonica Group]
Length = 869
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
N ++ +Q D A Q++ + E GL+PD Y LIS C K K+D F+E
Sbjct: 243 TFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 302
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ S G P++ TY+ L+ G A + + + S + DR F A++
Sbjct: 303 V--------SAGIEPNVNTYSALIDGCAKAGQVAKAFG-AYGIMSSKKVKPDRVVFNALI 353
Query: 137 DALLYSGSI 145
A SG++
Sbjct: 354 SACGESGAV 362
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N I + + A ++ + + EA + + + P ++N+L+S C ++ D +
Sbjct: 208 MNKIHHASFLNACKKQRAVPEAVRFCKLIN---NPKMSTFNMLLSVCANSQDFDGALQVM 264
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ G K PD Y TL+ + ++ E+ EM S + + +T++A
Sbjct: 265 VLLKEAGLK-------PDCKLYTTLISTCAKCGKVDAMFEVFHEMVS-AGIEPNVNTYSA 316
Query: 135 MVDALLYSGSI-KVVGLYAL 153
++D +G + K G Y +
Sbjct: 317 LIDGCAKAGQVAKAFGAYGI 336
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N+ V N +I+ + EA +++ ++K G++PD +Y ISAC K ++
Sbjct: 725 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 784
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G K P+I TY TL+ G+ A + L EMK+ + D++ +
Sbjct: 785 EEMEALGVK-------PNIKTYTTLIKGWARASLPEKALSCYEEMKA-MGIKPDKAVYHC 836
Query: 135 MVDALLYSGSIKVVGLYA 152
++ +LL SI +Y+
Sbjct: 837 LLTSLLSRASIAEAYIYS 854
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 36 AYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E V++G++PD + YN +ISA +D + ++++ + P
Sbjct: 538 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHR-------PTTR 590
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
T+ ++ G+ + D++ LE VF+M C + TF +++ L+
Sbjct: 591 TFMPIIHGYAKSGDMRRSLE-VFDMMRRCGCVPTVHTFNGLINGLV 635
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N+ V N +I+ + EA +++ ++K G++PD +Y ISAC K ++
Sbjct: 728 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 787
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G K P+I TY TL+ G+ A + L EMK+ + D++ +
Sbjct: 788 EEMEALGVK-------PNIKTYTTLIKGWARASLPEKALSCYEEMKA-MGIKPDKAVYHC 839
Query: 135 MVDALLYSGSIKVVGLYA 152
++ +LL SI +Y+
Sbjct: 840 LLTSLLSRASIAEAYIYS 857
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 36 AYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E V++G++PD + YN +ISA +D + ++++ + P
Sbjct: 538 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHR-------PTTR 590
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
T+ ++ G+ + D++ LE VF+M C + TF +++ L+
Sbjct: 591 TFMPIIHGYAKSGDMRRSLE-VFDMMRRCGCVPTVHTFNGLINGLV 635
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E + +GL+PD +Y I+ + KL D + F Q ++ + GF PD+ TY
Sbjct: 425 EMLNRGLQPDRFAY---ITRIVGELKLGDPSKAFGMQ-----EEMLARGFPPDLITYNVF 476
Query: 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159
+ G +L+ E+V +M L+ D T+T+++ A L +G ++ A +F E+
Sbjct: 477 IDGLHKLGNLKEASELVKKMLY-NGLVPDHVTYTSIIHAHLMAGHLR----KARAVFLEM 531
Query: 160 VKRVCSNPGLWPKPHLYVSMMHELAAR 186
+ + G++P Y ++H A R
Sbjct: 532 LSK-----GIFPSVVTYTVLIHSYAVR 553
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I I EA+ + + +GL P ++YN LI + LDV M +++
Sbjct: 334 NTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIK 393
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+G PD+FT+ L+ GF +L E+ EM
Sbjct: 394 HGPD-------PDVFTFTILVRGFCKLGNLPMAKELFDEM 426
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ +++R++ AY + + + D +SYN++++ K+ + + E LK+
Sbjct: 174 FNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKAL---EMLKE 230
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++ G P++ +Y T+L G+ A + + EMK + +D T+T ++
Sbjct: 231 MVKR----GLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKK-RDCEIDVITYTTVIHGF 285
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190
+G IK A +F +VK+ G+ P Y + + L + + D
Sbjct: 286 GVAGEIK----RARKVFDTMVKK-----GVLPSVATYNAFIQVLCKKDNVD 327
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA I+ + +D A I E V KG P+S++YN++I +++ M F ++KD
Sbjct: 314 NAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKD 373
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G C P++ TY ++ F ++ L++ F+ + + + + T+ ++ A+
Sbjct: 374 DG--C-----EPNVQTYNLVIRYFCDEGEIDKALDL-FQKMTSGDCLPNLDTYNILISAM 425
Query: 140 L 140
Sbjct: 426 F 426
>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
Length = 541
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 1 IFEENEIVNREHWKLNTIVMN--AVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILI 58
F E+ I K TI+++ AV+ +AQ++ + E +E+G++PD +YN LI
Sbjct: 204 FFRESPIQFDVSAKTYTILISGWAVVAKPEKAQKLFD-----EMIERGVQPDVPAYNALI 258
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
A + DV + EQLKD + S G PD TY L +KD ++ L ++
Sbjct: 259 DALCRGG--DVAL-AQEQLKDMQR---SRGLAPDAATYGPFLRSACASKDARAALRVLDR 312
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSI 145
M++ +L + T+ A++ L G +
Sbjct: 313 MRA-RSLTPNVFTYNAVIRLLCELGEV 338
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 29/117 (24%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLD------ 68
N NAVI E +DEAY IL E G +PD SYN L++ K K+++
Sbjct: 321 NVFTYNAVIRLLCELGEVDEAYNILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLI 380
Query: 69 ------VTMP----FNEQLK--------DNGQKCSSG----GFHPDIFTYATLLMGF 103
+ +P +N LK D + G GFHP TYA ++ G
Sbjct: 381 SRMDEGLCLPNRHSYNMILKMLIAIGRVDRAIEVWDGMEKRGFHPGAATYAVMIHGL 437
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I+ +I +A R+++A + S+ E G + D+ +YNILI+ + K+L
Sbjct: 352 DAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELL 411
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+++K+ G PD+ TY TLL G A D ++ E++ +M C ++ TF
Sbjct: 412 QEMKEVG-------IRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVI---TF 461
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+V G I AL I R G+ P +Y +++ L R D D+
Sbjct: 462 GTLVHGYCKVGKID----EALRIL-----RSMDESGIHPNNVIYNTLIDFLCKRGDVDL 511
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I ++ + +IDEA +IL S+ E G+ P+++ YN LI K +D+ +
Sbjct: 457 SVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELF 516
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+++K+ ++ T+ LL G R + E++ +M+
Sbjct: 517 DEMKEK-------SVPANVTTFNALLKGLRDKNMPEKAFELMDQMR 555
>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Cucumis sativus]
Length = 683
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I +++I + + +A+++L V K P+ +Y IL+ K D+ +
Sbjct: 149 NVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLY 208
Query: 75 EQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRHA 106
++K G K +SGG PD+ Y L+ GF +
Sbjct: 209 SKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKS 268
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
+ S L + EM S N++ D TF +++ L G +Y+
Sbjct: 269 GKVSSALNLAQEMTS-KNVVFDIVTFNVLINCLFKLGKSDTESIYS 313
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 38/191 (19%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMP 72
K N +++A + + + R++EA +++ + G L+PD ++Y L+ +K+ K+ +
Sbjct: 217 KDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALN 276
Query: 73 FNEQL-----------------------KDNGQKCSSG----GFHPDIFTYATLLMGFRH 105
+++ K + + S G PD+ TY T+L G
Sbjct: 277 LAQEMTSKNVVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNTMLNGNFK 336
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+ S LE+ EMKS LI + T M++ L +G ++ A+ I E+V
Sbjct: 337 KGNWTSALELWNEMKS-RKLIPNAITCNIMINGLCEAGRME----NAIDILKEMVLM--- 388
Query: 166 NPGLWPKPHLY 176
GL+P Y
Sbjct: 389 --GLYPTSTTY 397
>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ + QRI EA +L E EKGL P +++YN LI KT L+ M F
Sbjct: 498 DVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFL 557
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
+ + ++ P++ TY+TL+ G +A
Sbjct: 558 SMMIEKERE-------PNVITYSTLINGLCNA 582
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 23 VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQ 82
V E + + ++ +++ E+G +PD ++Y+ + IK +++D + + +
Sbjct: 436 VKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDI----- 490
Query: 83 KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+ G+ PD+ Y L+ G + + ++ EM+ L+ T+ ++D L
Sbjct: 491 --CAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEE-KGLVPSAVTYNTLIDGL 544
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
NEI +R W ++ V + ++ A + ++D+A +++E++E K + + ++ LI +K
Sbjct: 125 NEIHDR-GW-VDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVK 182
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++D + +++K +G F PDI Y ++ G KD++ L + EMK
Sbjct: 183 ESRVDKALHLFDKMKKSG-------FTPDISLYDVIIGGLCVNKDVKKALCLYSEMKG 233
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 24/124 (19%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKG-----------------LEPDSLSYNI 56
K +T++ N+V+ + + + +AY +L+++ G + P+S +++I
Sbjct: 270 KASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSI 329
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
+I+ IKT LD+ + + G K PD+ Y L+ G + LQ ++
Sbjct: 330 VINGLIKTGDLDLAVGLFRDMARIGCK-------PDLLLYNNLIDGLCTSNRLQESCGLL 382
Query: 117 FEMK 120
EM+
Sbjct: 383 QEME 386
>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
Length = 1152
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNE 75
T N I A + RID+A ++L S+ PD +SYN L+ IK K + ++ F++
Sbjct: 380 TSTYNIYICALCDFGRIDDARELLSSMAA---PDVVSYNTLMHGYIKMGKFVEASLLFDD 436
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTA 134
+G HP I TY TL+ G + +L+ + EM + LI D T+T
Sbjct: 437 --------LRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTT--QLIFPDVITYTT 486
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
+V + +G++ + A ++ E++++ G+ P + Y +
Sbjct: 487 LVKGFVKNGNLSM----ATEVYDEMLRK-----GIKPDGYAYTT 521
>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
micrantha]
Length = 431
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL------- 298
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD FTY TL+ G DL + E M N+ LD +TA
Sbjct: 299 KQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQ-ENIRLDDVAYTA 357
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 358 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGD 402
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G P
Sbjct: 158 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQP 210
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 211 DVYTYSVLINGLCKESKMDGANELFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDLA--- 266
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 267 -----MEIYKQMLSQS-LLPDLITYNTLIYGLCKKGD 297
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 32/164 (19%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD- 68
W L + + N ++ +DE +++ + + G++PD +Y++LI+ K K+D
Sbjct: 171 WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDG 230
Query: 69 VTMPFNEQLKD----NG--------QKCSSG---------------GFHPDIFTYATLLM 101
F+E L NG C +G PD+ TY TL+
Sbjct: 231 ANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
G DL+ +++ EM S L D+ T+T ++D G +
Sbjct: 291 GLCKKGDLKQAHDLIDEM-SMKGLKPDKFTYTTLIDGCCKEGDL 333
>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
Length = 697
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 42/208 (20%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LN NA+I+ + R DEA ++LE + ++G+ PD SY+IL++A ++ M
Sbjct: 258 LNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNL 317
Query: 74 NEQLKDNGQK-----CSS-----------------------GGFHPDIFTYATLLMGFRH 105
++++ +K C+S G+ D+ +Y+TL+ GF
Sbjct: 318 IQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLK 377
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK--VVGLYALCIFG------ 157
+++S +V EM+ L+ D + +++ G +K + Y + G
Sbjct: 378 GHNVKSANNLVHEMRK-NGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDII 436
Query: 158 ---EIVKRVCSNPGLWPKPHLYVSMMHE 182
IV + CS G + + +Y++ M +
Sbjct: 437 TCNHIVDQYCSR-GQFEEALIYINQMKD 463
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 33 IDEAYQILESVEKGLEPDSL-SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I++A+ ++ + +P ++ YN LI + + D + E++KD G P
Sbjct: 241 IEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEG-------ISP 293
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
DI++Y+ L+ F D++S + ++ EM+ C
Sbjct: 294 DIYSYSILVNAFCTEGDIESGMNLIQEMEHC 324
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 22 AVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
A+I+ + A+ + + +++ + P+ +Y L+ K K+LD+ + +K N
Sbjct: 581 AIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRN 640
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
PD+ TY L+ G++ +++ E+ EMK
Sbjct: 641 S-------VTPDVKTYTALIAGYQRIENIDRAYEVFDEMK 673
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+++++N + + S+ +D+A ++ E ++ GL P+ +++ LI K ++D+ M
Sbjct: 209 HSVLINGLCKESK----MDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ S PD+ TY TL+ G DL+ +++ EM S L D+ T+T
Sbjct: 265 RQM-------LSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEM-SMKGLKPDKITYTT 316
Query: 135 MVDALLYSGSIKVVGLY 151
++D G ++ Y
Sbjct: 317 LIDGNCKEGDLETAFEY 333
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + +S+ K GL P +S+N L++ IK LD ++ + G PD++
Sbjct: 155 AQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ-------ASGVQPDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
T++ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 208 THSVLINGLCKESKMDDANELFDEMLB-NGLVPNGVTFTTLIDGHCKNGRVDLA------ 260
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI +++ S L P Y ++++ L + D
Sbjct: 261 --MEIYRQMLSQS-LLPDLITYNTLIYGLCKKGD 291
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 35/226 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N I E ++++EA + E + + G DS +Y +LI K L+ +
Sbjct: 358 NVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKIL 417
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFT 133
++ KD G K D F Y++++ G + L IV +M K C L +
Sbjct: 418 KEAKDGGDKL-------DAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCEL-------S 463
Query: 134 AMVDALLYSGSIKVVGL-YALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD-- 188
V L +G ++ L A+C F E+ + CS P Y ++++ L A R
Sbjct: 464 PHVCNPLINGFVRASKLEEAICFFREMETKGCS-----PTVVSYNTLINGLCKAERFSDA 518
Query: 189 YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
Y VK + W T S LLM+ ++D+AL+
Sbjct: 519 YSFVKEMLEKDWKPDMITYS---------LLMDGLCQGKKIDMALN 555
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA++ A EA +++A L E G+ P+ +YNILI +K ++ + +
Sbjct: 118 NALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWM-- 175
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
S PD+++Y T++ G + DL S LE+ EM L+ D + M+D
Sbjct: 176 -----WSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFE-RGLVPDVMCYNIMIDGF 229
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
G V G EI +R+ ++P Y M++ L +D + RM
Sbjct: 230 FKRGDY-VQG-------KEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERM 281
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I +A+R +AY + E +EK +PD ++Y++L+ + KK+D+ + Q+
Sbjct: 503 NTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQV-- 560
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PD+ + L+ G A ++ L + MK N + + T ++D L
Sbjct: 561 -----LVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQ-SNCLPNLVTHNTLMDGL 614
Query: 140 LYSGSIKVVGLYALCIF 156
+ ++ + C+F
Sbjct: 615 YKARECEMASVIWACMF 631
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPF 73
+ + N +I+ + + +I E + KG + P+ ++YN++I+ K + D ++
Sbjct: 218 DVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEM 277
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++K N +C D+FTY++L+ G ++ +E+ EM ++++D T+
Sbjct: 278 WERMKKN--ECEM-----DLFTYSSLICGLCDVGNVDGAVEVYKEMVK-RSVVVDVVTYN 329
Query: 134 AMVDALLYSGSIK 146
A+++ +G IK
Sbjct: 330 ALLNGFCRAGKIK 342
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
NA++ A +I E++++ + K + +SYNI I + +K++ + E L+
Sbjct: 329 NALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRR 388
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G SG D TY L+ G L L+I+ E K + LD ++++VD L
Sbjct: 389 G----SGA---DSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDK-LDAFAYSSIVDGLS 440
Query: 141 YSGSI 145
G +
Sbjct: 441 KQGRV 445
>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
Length = 410
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILIS 59
+F+E + H N + N +I ++ +A Q+ E++ + G+ P +++N+LI
Sbjct: 130 LFDEMPVKGVVH---NVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLID 186
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K K+ + F Q+K + G P + TY L+ GF +D+ + +M
Sbjct: 187 GYGKAGKMANALHFFNQMK-------AAGLPPSVVTYNELICGFCRVRDIARAVRAFLDM 239
Query: 120 KSCCNLILDRSTFTAMVDAL 139
K L + T+T ++ A
Sbjct: 240 KE-RGLAPTKVTYTILIAAF 258
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 52/230 (22%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
RIDEA Q+ + V KG D +SYN LI+ K K+++ M ++ G
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ G PDI+TY LL G +L+ L ++FE
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL-VIFEDMQK 428
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
+ LD T+T ++ + +G ++ A +F + S GL P Y +MM
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVE----EAWSLFCSL-----SLKGLKPDIVTYTTMMSG 479
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLA 232
L + V++ Y +M ++ G + + L+DG + L+
Sbjct: 480 LCTKGLLHEVEALYTKM-------------KQEGLMKNDCTLSDGDITLS 516
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 19/150 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + +++ R+ +A +++ VE G +PD ++YN +I + KTK+++ F
Sbjct: 154 DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFF 213
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRST 131
++++ G P++ TY L+ G ++ D LL + + K N+I T
Sbjct: 214 KEIERK-------GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI----T 262
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
++A++DA + +G + L A +F E+V+
Sbjct: 263 YSALLDAFVKNGKV----LEAKELFEEMVR 288
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISA-CIKTKKLDV 69
W++ + +N +I+ + R D+A ++ E G PD SYN LI C++ K +
Sbjct: 122 WRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEA 181
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
D G CS P++ +Y T++ GF ++ + EM L D
Sbjct: 182 LELLIHMTADGGYNCS-----PNVVSYNTVIDGFFKEGEVDKAYFLFHEMMG-QGLPPDV 235
Query: 130 STFTAMVDAL 139
T+ +++D L
Sbjct: 236 VTYNSLIDGL 245
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N VI+ + +D+AY + E + +GL PD ++YN LI K + +D +
Sbjct: 199 NVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAIL 258
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ + D G PD TY ++ G+ L+ + ++ +M S L D T++
Sbjct: 259 QHMFDK-------GVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKM-SGSGLQPDVVTYSL 310
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
++ G A +F +V++ G P +Y ++H A +
Sbjct: 311 LIQYYCKIGRCA----EARSVFDSMVRK-----GQKPNSTIYHILLHGYATK 353
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E++NR + I MN +++ + R+ EA + V G++PD +SYN LI
Sbjct: 470 EMINR-GIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFV 528
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K+D ++ +QL + S G PD +TY +LL G+ ++ L + EM
Sbjct: 529 GKMDESI---KQL----DRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREM 576
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLK 78
N +I A + +D+A E + GL PD +SY+ +I KT ++ D FN+ +
Sbjct: 379 NILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMV- 437
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
S G P+I ++ +L+ G + + + E+ FEM
Sbjct: 438 -------SEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEM 471
>gi|147832566|emb|CAN63846.1| hypothetical protein VITISV_010038 [Vitis vinifera]
Length = 457
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA----CIKTKKLDVT 70
+ + N ++ A ID AY ++ + E G+ PD ++YN LI+A C+ ++ LD+
Sbjct: 41 DVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLDL- 99
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSLLEIVFEMKSCCNLILDR 129
F E L+ G PD+++Y +L+ F+ K ++ VF+ NL+
Sbjct: 100 --FEEMLRT--------GIRPDVWSYNSLMHCFFKLGKPDEA--NRVFQDIILTNLLPSS 147
Query: 130 STFTAMVDALLYSG 143
STF M++ L +G
Sbjct: 148 STFNIMINGLCNNG 161
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 37 YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96
Y+ L+ +G P+ ++YNILI+ K++KL+ +L ++G PD TY
Sbjct: 170 YRYLQ--RQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNV-------PDAITY 220
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
T++ ++ + EI EMKS D ++ A++ AL +G ++
Sbjct: 221 TTVMKCCFRSRQFEQGFEIFSEMKS-KGYAFDAFSYCAVIAALTKTGRLE 269
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 22 AVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
AVI A + R++EA I+E + + ++ D +SYN +++ + KL+ T ++++++
Sbjct: 257 AVIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEH 316
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE 114
G +C D +T+ L+ G A +++ L
Sbjct: 317 GLEC-------DEYTHTILIDGLCKAGNVEGALR 343
>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
Length = 1139
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 30/153 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N NA+I+ + +R D+A ++ E +GLEP+ ++Y ILI A K ++ +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
++++D G K C G G P +Y+ L+ G
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
DL S +E+ EM + + TFTA+++
Sbjct: 457 GDLSSCMELHREMAE-RGIAWNNYTFTALINGF 488
>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
Length = 802
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 2 FEENEIVN--REHW-KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNIL 57
E E++N EHW N+I + ++ R ++ EA ++ E V KG P + N+L
Sbjct: 502 LEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLL 561
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
+ + + + F E+ C + G ++ + T++ GF +L + L ++
Sbjct: 562 LQSLCRDGRTHEARKFMEE-------CLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD 614
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+M N D T+T +VD L G I E++K++ + G+ P P Y
Sbjct: 615 DM-YLINKHADVFTYTTLVDTLGKKGRIAEA--------TELMKKML-HKGIDPTPVTYR 664
Query: 178 SMMH 181
+++H
Sbjct: 665 TVIH 668
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + R++EA ++LE + KG PD +SY ++ K K++
Sbjct: 311 NVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRI------- 363
Query: 75 EQLKDNGQKCSS-GGFHPDIFTYATL---LMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+++D +K + G PD TY TL L HA + L+ E +D+
Sbjct: 364 VEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEK----GFRIDKL 419
Query: 131 TFTAMVDALLYSGSI 145
++A+V AL G +
Sbjct: 420 GYSAIVHALCKEGRM 434
>gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Cucumis sativus]
gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Cucumis sativus]
Length = 710
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 76/152 (50%), Gaps = 19/152 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
+L+ I + +I +++ R D+A + E + K GL PD ++Y+ ++ K++ +
Sbjct: 217 ELDNITYSTIITCAKKCSRFDKAMEWFERMYKTGLMPDEVTYSAILDVYANLGKVEEVLS 276
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILDR 129
E+ + + G+ PD +T++ L F A D ++ ++ EMKS NL++
Sbjct: 277 LYERGR-------ASGWTPDPYTFSVLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVV-- 327
Query: 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
+ ++DA+ +G +A +F E+V+
Sbjct: 328 --YNTLLDAMGKAGKPG----FARSLFDEMVE 353
>gi|393218389|gb|EJD03877.1| hypothetical protein FOMMEDRAFT_19211 [Fomitiporia mediterranea
MF3/22]
Length = 426
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
V N ++ +R+ +A ++ E ++K G +PD +SYN I+ K L F Q
Sbjct: 152 FVFNTILNGYLLERRLTDAVKLFEEMKKHGPQPDIVSYNTFIAHYAKRADLHGVADFVRQ 211
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRSTFT 133
L + G PD+FT+ T+L A LLE++ M N+ +T++
Sbjct: 212 L-------TEAGVEPDVFTFTTILSAILKAGIPNGTARLLEVMDSMGVKQNV----ATYS 260
Query: 134 AMVDALLYSGS 144
A++++ + G+
Sbjct: 261 AIINSQVREGT 271
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 52/230 (22%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
RIDEA Q+ + V KG D +SYN LI+ K K+++ M ++ G
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ G PDI+TY LL G +L+ L ++FE
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL-VIFEDMQK 428
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
+ LD T+T ++ + +G ++ A +F + S GL P Y +MM
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVE----EAWSLFCSL-----SLKGLKPDIVTYTTMMSG 479
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLA 232
L + V++ Y +M ++ G + + L+DG + L+
Sbjct: 480 LCTKGLLHEVEALYTKM-------------KQEGLMKNDCTLSDGDITLS 516
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 19/150 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + +++ R+ +A +++ VE G +PD ++YN +I + KTK+++ F
Sbjct: 154 DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFF 213
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRST 131
++++ G P++ TY L+ G ++ D LL + + K N+I T
Sbjct: 214 KEIERK-------GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI----T 262
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
++A++DA + +G + L A +F E+V+
Sbjct: 263 YSALLDAFVKNGKV----LEAKELFEEMVR 288
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 6 EIVNREHWKL---NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISA- 60
+++ R KL N ++ N +I++ + + ++EA+ + E V KG+ PD ++Y+ LIS
Sbjct: 182 QLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGF 241
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
CI K D FN+ + + +PD++T++ L+ GF
Sbjct: 242 CILGKLNDAIGLFNKMISEE--------INPDVYTFSILVDGF 276
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ ++ +I A ++++ + ++G+ D ++YN ++ A K ++D +
Sbjct: 370 DVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALL 429
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLE 114
++KD G PD++TY L+ G KD Q++ E
Sbjct: 430 TKMKDE-------GIQPDMYTYTILIDGLCKGGRLKDAQNIFE 465
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
++ K + + ++++ +++++A I ++ + G+ + SYNI+I+ K KK+D
Sbjct: 294 KQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVD 353
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
M +++ C + PD+ TY +L+ G + + L++V EM + D
Sbjct: 354 EAMNLFKEM-----HCKN--IIPDVVTYNSLIDGLCKSGKISYALKLVDEMHD-RGVPHD 405
Query: 129 RSTFTAMVDAL 139
+ T+ +++DAL
Sbjct: 406 KITYNSILDAL 416
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + +++DEA + + + K + PD ++YN LI K+ K+ + +++ D
Sbjct: 340 NIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHD 399
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G D TY ++L + + ++ +MK + D T+T ++D L
Sbjct: 400 RGVP-------HDKITYNSILDALCKNHQVDKAIALLTKMKD-EGIQPDMYTYTILIDGL 451
Query: 140 LYSGSIK 146
G +K
Sbjct: 452 CKGGRLK 458
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
+ I N++++A + ++D+A +L + ++G++PD +Y ILI K +L D F
Sbjct: 405 DKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIF 464
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+ L G++ ++TY ++ GF
Sbjct: 465 EDLLVK--------GYNITVYTYTVMIQGF 486
>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
Length = 814
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 21/185 (11%)
Query: 2 FEENEIVN---REHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNIL 57
E E++N + W N+I + ++ R+ ++ EA ++ E V KG P + N+L
Sbjct: 509 LEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLL 568
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
+ + + + F E+ C + G ++ + T++ GF +L + L ++
Sbjct: 569 LQSLCRDGRTHEARKFMEE-------CLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD 621
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+M N D T+T +VDAL G I E++K++ + G+ P P Y
Sbjct: 622 DM-YLINKHADVFTYTTLVDALGKKGRIAEA--------TELMKKML-HKGIDPTPVTYR 671
Query: 178 SMMHE 182
+++H
Sbjct: 672 TVIHR 676
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
NE++++ H + + AV+ +D+A ++L+ + G +P+++SY L++ +
Sbjct: 445 NEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCR 504
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
T K ++ E + + ++ S P+ TY+ L+ G R L ++V EM
Sbjct: 505 TGK---SLEAREMMNMSEEQWWS----PNSITYSVLMHGLRKEGKLSEACDVVREM 553
>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 15/112 (13%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF---NEQLKDNGQKCSSG 87
+ +EA +++ E +G++PD +SYN LIS +KK D F +E L S
Sbjct: 518 KFEEARELMGEMKRRGIKPDHISYNTLISG--YSKKGDTKHAFIVRDEML--------SL 567
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
GF+P + TY LL G +D + E++ EMKS ++ + S+F ++++A+
Sbjct: 568 GFNPTLLTYNALLKGLSKNQDGELAEELLREMKS-EGIVPNDSSFCSVIEAM 618
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
GL PDS+SYNILI C L+ + +++ G P +TY TL+ G
Sbjct: 323 GLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMV-------PTFYTYNTLIHGLFM 375
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
+++ ++ E++ ++LD T+ +++ G K A + E++
Sbjct: 376 ENKIEAAEILIREIRE-KGIVLDSVTYNIVINGYCQHGDAK----KAFALHDEMM----- 425
Query: 166 NPGLWPKPHLYVSMMHELAAR 186
G+ P Y S+++ L R
Sbjct: 426 TDGIKPTQFTYTSLIYVLCRR 446
>gi|449466215|ref|XP_004150822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 487
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N IV NA+I E +ID+++++L+S V G P+SL+YN++ S+ IK KK+ +V+ F
Sbjct: 312 NLIVYNAIIGLLSENSKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFF 371
Query: 74 NEQLKD 79
E +K+
Sbjct: 372 REMVKN 377
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LNT + +I+ + +++EA IL E + KG +++ YN LISA K K+
Sbjct: 417 LNTYTI--LIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKI------ 468
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L G+ SS G PDIFT+ +L+ G +++ L + +M +I + TF
Sbjct: 469 HEALDMFGEM-SSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDM-VLEGVIANSVTFN 526
Query: 134 AMVDALLYSGSIK 146
++ A L G I+
Sbjct: 527 TLIHAFLRRGEIQ 539
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNIL 57
+ E ++V+R + + N + ++ + RIDEA +L V P+ + +N L
Sbjct: 296 VLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPG---PNVVHFNTL 352
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
++ ++ +L+ F K + G+ PD+FT++TL+ G S LE+V
Sbjct: 353 VNGFVRNGRLNEATAFVYD------KMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVN 406
Query: 118 EM--KSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
+M K C + +T+T ++D G ++ GL
Sbjct: 407 DMDAKGC---KPNLNTYTILIDGFCKKGQLEEAGL 438
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ I N +I+A + +++ + E + KGL P ++ NILI+ K+ + F
Sbjct: 555 LDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEF 614
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++D + GF PDI TY +L+ G +Q L + ++++
Sbjct: 615 ---MRDMIHR----GFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQA 655
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I +A + E ++L + +E+GL D ++YN LIS C K K+
Sbjct: 500 NIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELK 559
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
E++ G PDI+T+ LL G +A
Sbjct: 560 EEMVKK-------GIQPDIYTFNLLLHGLCNA 584
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ I N +I + ++ E +++ E V+KG++PD ++N+L+ K+D
Sbjct: 534 FDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKID----- 588
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ +C G+ P+++TY ++ G+ A ++ ++ E+ S L L+ +
Sbjct: 589 --EASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVS-KKLELNSVVYN 645
Query: 134 AMVDALLYSGSI 145
+++ A +G++
Sbjct: 646 SLIRAYCINGNM 657
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I ++ R+DEAY+ E V++ + P ++Y++ I+ IK +K+D N
Sbjct: 290 NVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEA---N 346
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
LK+ S GF P+ Y TL+ G+ ++ L+I +M S
Sbjct: 347 CVLKE----MSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLS 389
>gi|125531299|gb|EAY77864.1| hypothetical protein OsI_32907 [Oryza sativa Indica Group]
Length = 1089
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
N ++ +Q D A Q++ + E GL+PD Y LIS C K K+D F+E
Sbjct: 463 TFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 522
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ S G P++ TY+ L+ G A + + + S + DR F A++
Sbjct: 523 V--------SAGIEPNVNTYSALIDGCAKAGQVAKAFG-AYGIMSSKKVKPDRVVFNALI 573
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
A SG++ A + E+ + G P
Sbjct: 574 SACGESGAVA----RAFDVLSEMTAEASESKGSKP 604
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N I + + A ++ + + EA + + + P ++N+L+S C ++ D +
Sbjct: 428 MNKIHHASFLNACKKQRAVPEAVRFCKLINN---PKMSTFNMLLSVCANSQDFDGALQVM 484
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ G K PD Y TL+ + ++ E+ EM S + + +T++A
Sbjct: 485 VLLKEAGLK-------PDCKLYTTLISTCAKCGKVDAMFEVFHEMVS-AGIEPNVNTYSA 536
Query: 135 MVDALLYSGSI-KVVGLYAL 153
++D +G + K G Y +
Sbjct: 537 LIDGCAKAGQVAKAFGAYGI 556
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K +T+ NA+I + ++ A++++ E VEKG +PD S+N +I K KLD M
Sbjct: 225 KPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMD 284
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E + G C PD+ +Y + G L+ I+ EM
Sbjct: 285 LLEDMPRRG--CP-----PDVLSYRIIFDGLCEMMQLKEATSILDEM 324
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+N+++ A + +++++ Q+ + PD+ ++NILI A LD ++++
Sbjct: 56 VNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQK 115
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G K P++ T+ TL+ G L+ L + +M + + S +T ++
Sbjct: 116 RGVK-------PNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGF 168
Query: 140 LYSGSI 145
G +
Sbjct: 169 CGVGEL 174
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
KL + V + +I A + R +E IL + E G +PD+++YN +I+ K L+
Sbjct: 190 KLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHR 249
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
+++ + G K PD+F++ T++
Sbjct: 250 VMDEMVEKGCK-------PDVFSFNTII 270
>gi|18642701|gb|AAL76193.1|AC092173_5 Putative crp1 protein [Oryza sativa Japonica Group]
Length = 1089
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
N ++ +Q D A Q++ + E GL+PD Y LIS C K K+D F+E
Sbjct: 463 TFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 522
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ S G P++ TY+ L+ G A + + + S + DR F A++
Sbjct: 523 V--------SAGIEPNVNTYSALIDGCAKAGQVAKAFG-AYGIMSSKKVKPDRVVFNALI 573
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
A SG++ A + E+ + G P
Sbjct: 574 SACGESGAVA----RAFDVLSEMTAEASESKGSKP 604
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N I + + A ++ + + EA + + + P ++N+L+S C ++ D +
Sbjct: 428 MNKIHHASFLNACKKQRAVPEAVRFCKLINN---PKMSTFNMLLSVCANSQDFDGALQVM 484
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ G K PD Y TL+ + ++ E+ EM S + + +T++A
Sbjct: 485 VLLKEAGLK-------PDCKLYTTLISTCAKCGKVDAMFEVFHEMVS-AGIEPNVNTYSA 536
Query: 135 MVDALLYSGSI-KVVGLYAL 153
++D +G + K G Y +
Sbjct: 537 LIDGCAKAGQVAKAFGAYGI 556
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N+VI + R+DEA Q+ +S+ K P+ +++ LI+ K ++D +
Sbjct: 511 DTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGL--- 567
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E + G++ G + TY TL+ GFR ++ L+I EM
Sbjct: 568 ELFCEMGRR----GIVANAITYITLIHGFRKVGNINGALDIFQEM 608
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
E++ R+ + + NA+I A + + EA ++ E + +G+ P +++Y+ +I K
Sbjct: 279 QEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCK 338
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+LD + G CS PDI T+ TL+ G+ AK + ++++ EM
Sbjct: 339 QNRLDAAEHMFYLMATKG--CS-----PDIITFNTLIAGYCRAKRVDDGIKLLHEMTE-A 390
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
L+ + T+T ++ G +
Sbjct: 391 GLVANTITYTTLIHGFCQVGDL 412
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI +++I+ + R+D A + KG PD +++N LI+ + K++D +
Sbjct: 325 STITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLL 384
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRST 131
++ + G + TY TL+ GF DL + +++ EM S C N++ T
Sbjct: 385 HEM-------TEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVV----T 433
Query: 132 FTAMVDALLYSGSIK 146
++D L +G +K
Sbjct: 434 CNTLLDGLCDNGKLK 448
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 56/227 (24%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK------------GLEPDSLSYNILISACIK 63
N + N +++ + ++ +A ++ ++++K G+EPD +YNILIS I
Sbjct: 430 NVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLIN 489
Query: 64 TKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFT 95
K E++ G S F P++ T
Sbjct: 490 EGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVT 549
Query: 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCI 155
+ TL+ G+ A + LE+ EM ++ + T+ ++ G+I AL I
Sbjct: 550 FTTLINGYCKAGRVDDGLELFCEMGR-RGIVANAITYITLIHGFRKVGNIN----GALDI 604
Query: 156 FGEIVKR-------VCSN--PGLWPKPHL--YVSMMHELAARVDYDI 191
F E++ N GLW K L V+M+ +L V Y +
Sbjct: 605 FQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQMSVGYQL 651
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I A+R+D+ ++L E E GL ++++Y LI + L+
Sbjct: 360 DIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAA---- 415
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS---- 130
+D Q+ S G P++ T TLL G L+ LE+ M+ + +D S
Sbjct: 416 ---QDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK-SKMDIDASHPFN 471
Query: 131 -------TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
T+ ++ L+ G L A ++ E+ R G+ P Y S++H L
Sbjct: 472 GVEPDVQTYNILISGLINEGKF----LEAEELYEEMPHR-----GIVPDTITYNSVIHGL 522
Query: 184 AARVDYDIVKSPYRRMWPDSTGTISPEV 211
+ D + M S SP V
Sbjct: 523 CKQSRLDEATQMFDSMGSKS---FSPNV 547
>gi|296423459|ref|XP_002841271.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637508|emb|CAZ85462.1| unnamed protein product [Tuber melanosporum]
Length = 729
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K T +NAV++ + Q +DEA + L+ + G++ D +YN ++ A +++KK
Sbjct: 442 KPTTATINAVLDGLLKHQHMDEAKETLQVATRMGIKSDLTTYNTMLRALLRSKK------ 495
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSLLEI--VFEMKSCCNLILDR 129
FNE + Q+ + G + DI T T+L G ++++ L ++ + E + +
Sbjct: 496 FNEAI-SLLQEMQAAGINADIVTATTVLDGMYKNSPTKPDLAKVKSLLEYMEAVGVPANE 554
Query: 130 STFTAMVDALL 140
TFT +++ LL
Sbjct: 555 VTFTTIIEGLL 565
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I+ I A A R E ++L+ ++ GL+P + + N ++ +K + +D
Sbjct: 409 DVILWTTRIHALFMADRAKEGMKVLKDMQNSGLKPTTATINAVLDGLLKHQHMD------ 462
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K+ Q + G D+ TY T+L +K + ++ EM+ + D T T
Sbjct: 463 -EAKETLQVATRMGIKSDLTTYNTMLRALLRSKKFNEAISLLQEMQ-AAGINADIVTATT 520
Query: 135 MVDALLYSGSIK 146
++D + + K
Sbjct: 521 VLDGMYKNSPTK 532
>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 23 VIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
+I + ++ R+D A+++ + + EK L P L + L+ + K +LD +M +++
Sbjct: 325 MIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQ--- 381
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
G P Y +L+ F A L++ L I EMK + +T +V++
Sbjct: 382 ----GFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKK-AGFRPNYGLYTMVVESHAK 436
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM--MHELAARVD 188
SG ++ A+ +F ++ K G P P Y + MH + +VD
Sbjct: 437 SGKLET----AMSVFSDMEK-----AGFLPTPSTYSCLLEMHSASGQVD 476
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 24/217 (11%)
Query: 18 IVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+V +++++ +A R+D + ++ +E GL P + Y LI + +K KL+ + ++
Sbjct: 355 LVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDE 414
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K GF P+ Y ++ + L++ + + +M+ + ST++ ++
Sbjct: 415 MK-------KAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEK-AGFLPTPSTYSCLL 466
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
+ SG + A+ ++ + +N GL P Y +++ LA + D+
Sbjct: 467 EMHSASGQVDS----AMKLYNSM-----TNAGLRPGLSTYTALLTLLANKKLVDVAAKVL 517
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
M + V A +LM + DG VDLAL
Sbjct: 518 LEM-----KAMGFSVDVSASDVLM-VYIKDGSVDLAL 548
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
IFE+ + + L ++ +IE + ++++A+ + S+ KG++P+ ++Y ++IS
Sbjct: 460 IFED---LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L +++++G P+ TY TL+ DL + +++ EM
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGN-------APNDCTYNTLIRAHLRDGDLTASAKLIEEM 569
Query: 120 KSCCNLILDRSTFTAMVDALL 140
KS C D S+ ++D LL
Sbjct: 570 KS-CGFSADASSIKMVIDMLL 589
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
+++ R + + ++I+ +R+D+ ++ ++ K GL ++++Y+IL+ ++
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+ + E+L Q+ S G PD+ TY LL G L+ LEI FE
Sbjct: 417 GKIKLA----EEL---FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEI-FEDLQKSK 468
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHE 182
+ L +T +++ + G ++ + CS P G+ P Y M+
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVE-----------DAWNLFCSLPCKGVKPNVMTYTVMISG 517
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV 229
L + R+M D +P + + L+ A L DG +
Sbjct: 518 LCKKGSLSEANILLRKMEEDGN---AP--NDCTYNTLIRAHLRDGDL 559
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +N +I + AY +L V K G EPD+ ++N LI+ K+ +
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLV 181
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ +N G PD+ TY +++ G + D +++ +M+ N+ D T++
Sbjct: 182 DRMVEN-------GCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEE-RNVKADVFTYST 233
Query: 135 MVDALLYSGSIKVVGLYALCIFGEI 159
++D+L G I A+ +F E+
Sbjct: 234 IIDSLCRDGCIDA----AISLFKEM 254
>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
Length = 1520
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNE 75
I + VI+ +D + Q+L ++ E+G++PD + YN L+ C+K+ + P +
Sbjct: 1085 ITFSTVIKGYCVQSNMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGR-----PWLCQ 1139
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
QL D Q+ G P FT L+ + L +++ E+ N+ + +T +
Sbjct: 1140 QLWDEMQE---NGIAPSNFTLTILIKMYGRLGQLDKAFQLMDELPRKYNIQTNTHVYTCL 1196
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSN-PGLWPKPHLYVSMMH-ELAARVDY---D 190
+ A + +G K+ AL +F C N G+ P Y +++ + R+ Y D
Sbjct: 1197 MSACITNGKYKM----ALDVFN------CMNGNGIVPDSKTYETIIFGAIKGRLLYQVID 1246
Query: 191 IVKSPYRRM 199
I+K+ Y M
Sbjct: 1247 IIKAAYTLM 1255
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K NTI+ + +I+ + +++++A I L +++G+ P++++YN +I AC + ++
Sbjct: 1011 KPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVGDMNKAAN 1070
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E + +N PD+ T++T++ G+ ++ L+++ M
Sbjct: 1071 LLEDMLNN-------NIEPDLITFSTVIKGYCVQSNMDRSLQLLRAM 1110
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLL 113
Y+ ++ ACI+ D L ++ K GFHPD+ TY L+ F + ++
Sbjct: 910 YSAILDACIRINSPD-------HLLESVNKYKKFGFHPDLQTYGLLIKFFSSSDNVMECF 962
Query: 114 EIVFEMKSCCNLILDRSTFTAMVDALL 140
+ EM S L+ T+ M DAL+
Sbjct: 963 HLWNEMTSLYGYELNEVTYGCMFDALV 989
>gi|297837105|ref|XP_002886434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332275|gb|EFH62693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 189
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDV 69
++ L+ + N +E + A+++++ + + S+ KG++PD ++YN +IS C K K +
Sbjct: 55 NFLLDGLCKNGKLEKALVARKVEDGWNLFCSLSLKGVKPDVITYNTMISGFCWKGLKEEA 114
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
F + +D G PD TY TL+ D + E++ EM+S C D
Sbjct: 115 DTLFKKMKED--------GPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRS-CGFAGDA 165
Query: 130 STFTAMVDALLYSGSI 145
ST +V +L+ G +
Sbjct: 166 STI-GLVTNMLHDGRL 180
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 16/178 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I+ + D A ++ + V GL PD ++YN L+ K KL+ +
Sbjct: 15 NTVTYNTLIQGLFQDGDCDMAQELFKVMVSDGLPPDIITYNFLLDGLCKNGKLEKALVAR 74
Query: 75 EQLKDNGQKCSSG--GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ CS G PD+ TY T++ GF K L+ + +F+ + D T+
Sbjct: 75 KVEDGWNLFCSLSLKGVKPDVITYNTMISGF-CWKGLKEEADTLFKKMKEDGPLPDSGTY 133
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVK--RVCSNPGLWPKPHLYVSMMHELAARVD 188
++ A L G E++K R C G L +M+H+ R+D
Sbjct: 134 NTLIRAHLRDGDKAAS--------AELIKEMRSCGFAGDASTIGLVTNMLHD--GRLD 181
>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
Length = 528
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
NA++ A ++++DEA + + + + G+ PD ++YN +I A +T +D + E+L
Sbjct: 163 FNALLSAYVNSRKLDEAKKAFKELPEKLGITPDLVTYNTMIKALCRTGSMDDILSIFEEL 222
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGF 103
+ N GF PD+ ++ TLL F
Sbjct: 223 EKN-------GFEPDLISFNTLLEEF 241
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 47/222 (21%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA---------------C 61
+ N +I+A +D+ I E +EK G EPD +S+N L+
Sbjct: 197 VTYNTMIKALCRTGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDL 256
Query: 62 IKTKKLDVTM-PFNEQLKD--NGQKCSSG----------GFHPDIFTYATLLMGFRHAKD 108
+K+K L + +N +++ +K + G PD+ TY + +R +
Sbjct: 257 MKSKNLAPNIRSYNSRVRGLTRNKKFTDAIDLINVMKTEGISPDVHTYNAFITAYRGDNN 316
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168
L+ +++ EMK L D T+ ++ L G + A+ I E +K
Sbjct: 317 LEEVMKWYNEMKE-KGLTPDTVTYCLLIPLLCKKGDLD----RAVEISEEAIKH-----K 366
Query: 169 LWPKPHLYVSMMHEL--AARVD--YDIVKS----PYRRMWPD 202
L +P++Y ++ L A ++D +VK+ Y R PD
Sbjct: 367 LLSRPNMYKPVVERLMGAGKIDEATQLVKNGKLQSYFRYLPD 408
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL 67
+R N + A+++ +A ++D A+++L++ + G EP+ + Y+ LI K K+
Sbjct: 605 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 664
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNL 125
D Q+ KC G+ P + TY +L+ L ++++ +M SC
Sbjct: 665 DSAQEVFLQM----TKC---GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 717
Query: 126 ILDRSTFTAMVDALLYSG 143
++ T+TAM+D L G
Sbjct: 718 VV---TYTAMIDGLCRIG 732
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 13/117 (11%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ D+A+Q++ E + KG PD+ +Y+ +I+ K++ +++K G
Sbjct: 437 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMK-------MVGVT 489
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFTAMVDALLYSGSI 145
PD++TY L+ F A ++ + EM+S C ++ T+TA++ A L + +
Sbjct: 490 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV---TYTALIHAYLKAKQV 543
>gi|115481316|ref|NP_001064251.1| Os10g0181200 [Oryza sativa Japonica Group]
gi|113638860|dbj|BAF26165.1| Os10g0181200, partial [Oryza sativa Japonica Group]
Length = 1021
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
N ++ +Q D A Q++ + E GL+PD Y LIS C K K+D F+E
Sbjct: 395 TFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 454
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ S G P++ TY+ L+ G A + + + S + DR F A++
Sbjct: 455 V--------SAGIEPNVNTYSALIDGCAKAGQVAKAFG-AYGIMSSKKVKPDRVVFNALI 505
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
A SG++ A + E+ + G P
Sbjct: 506 SACGESGAVA----RAFDVLSEMTAEASESKGSKP 536
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N I + + A ++ + + EA + + + P ++N+L+S C ++ D +
Sbjct: 360 MNKIHHASFLNACKKQRAVPEAVRFCKLINN---PKMSTFNMLLSVCANSQDFDGALQVM 416
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ G K PD Y TL+ + ++ E+ EM S + + +T++A
Sbjct: 417 VLLKEAGLK-------PDCKLYTTLISTCAKCGKVDAMFEVFHEMVS-AGIEPNVNTYSA 468
Query: 135 MVDALLYSGSI-KVVGLYAL 153
++D +G + K G Y +
Sbjct: 469 LIDGCAKAGQVAKAFGAYGI 488
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 11/133 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N I +I+ + R++EA +L+ + KGL +++ YN LISA K +K+ D F
Sbjct: 441 NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 500
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ SS G PDIFT+ +L+ G + L + +M +I + T+
Sbjct: 501 GDM--------SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM-LLEGVIANTITYN 551
Query: 134 AMVDALLYSGSIK 146
++ A L G+++
Sbjct: 552 TLIHAFLRRGAMQ 564
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ I N +I+A A I++ + E + KGL P+++S NILI+ +T + + F
Sbjct: 580 LDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEF 639
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
L+D + G PDI TY +L+ G Q L +
Sbjct: 640 ---LRDMIHR----GLTPDIVTYNSLINGLCKTGRAQEALNL 674
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNIL 57
I E ++V+R + N+ ++ ++DEA +L V P+ + +N L
Sbjct: 321 IHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN---PNVVLFNTL 377
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
I+ + +LD E + S G PDIFTY TL++G L S E++
Sbjct: 378 INGYVSRGRLD------EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMN 431
Query: 118 EM--KSC-CNLILDRSTFTAMVDALLYSGSIK 146
EM K C N+I T+T ++D G ++
Sbjct: 432 EMQIKGCEPNVI----TYTILIDRFCKEGRLE 459
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I I A + L + + +GL PD ++YN LI+ KT + +
Sbjct: 616 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 675
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
++L+ G PD TY TL+
Sbjct: 676 DKLQVE-------GICPDAITYNTLI 694
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 32 RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
R++E Y E ++G EPD ++Y I+I+A K KK D + F +++ K S P
Sbjct: 252 RVNEVYG--EMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPS-----P 304
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142
IF +L+ G K L LE FE L+ T+ A+V A +S
Sbjct: 305 HIF--CSLINGLGSEKKLNDALEF-FERSKSSGFPLEAPTYNALVGAYCWS 352
>gi|357145938|ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Brachypodium distachyon]
Length = 1084
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
N ++ +Q D A Q++ + E GL+PD Y LIS C K K+D F+E
Sbjct: 459 TFNMLLSVCAHSQDFDGALQVMMLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 518
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ S G P++ TY L+ G A + + + S + DR F A++
Sbjct: 519 V--------SAGIEPNVNTYGALIDGCAKAGQVAKAFG-AYGIMSSKKVKPDRVVFNALI 569
Query: 137 DALLYSGSI 145
A SG++
Sbjct: 570 SACGESGAV 578
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
+MNA+I + + ++ ++ ++L + E G+ P+ ++Y++L AC + + ++ + EQL
Sbjct: 747 MMNALITSLCDGDQVQKSIEVLNELKEFGVRPNEITYSVLCVACERNGEAELGIDLFEQL 806
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109
K +G G +P I T L + + DL
Sbjct: 807 KVDGI-----GLNPTIVGCVTGLCLQKFSNDL 833
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108
P ++N+L+S C ++ D + LK+ G K PD Y TL+
Sbjct: 455 PKMSTFNMLLSVCAHSQDFDGALQVMMLLKEAGLK-------PDCKLYTTLISTCAKCGK 507
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI-KVVGLYAL 153
+ ++ E+ EM S + + +T+ A++D +G + K G Y +
Sbjct: 508 VDAMFEVFHEMVS-AGIEPNVNTYGALIDGCAKAGQVAKAFGAYGI 552
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V GLEPD ++ +I + + +T ++D + KD ++ + PD +TY LL
Sbjct: 150 VNNGLEPDQVTTDIAVRSLCETGRVD-------EAKDLMKELTEKHSPPDTYTYNFLLKH 202
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
KDL + E V EM+ ++ D +FT ++D + S +++ +Y + G
Sbjct: 203 LCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLR-EAMYLVSKLG----- 256
Query: 163 VCSNPGLWPKPHLYVSMM 180
N G P LY ++M
Sbjct: 257 ---NAGFKPDCFLYNTIM 271
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 40/188 (21%)
Query: 29 EAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG------ 81
E R+DEA ++ E EK PD+ +YN L+ K K L V F ++++D+
Sbjct: 170 ETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDL 229
Query: 82 -----------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K + GF PD F Y T++ GF + + +
Sbjct: 230 VSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGVYKK 289
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
MK + D+ T+ ++ L SG ++ +Y + + G P Y S
Sbjct: 290 MKE-EGVEPDQITYNTLIYGLSKSGRVEEARMYL---------KTMVDAGYEPDTATYTS 339
Query: 179 MMHELAAR 186
+M+ + +
Sbjct: 340 LMNGMCRK 347
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+ I N +I ++ R++EA L++ V+ G EPD+ +Y L++ C K + L +
Sbjct: 298 DQITYNTLIYGLSKSGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGA-LSL 356
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+++ G C+ P+ TY TLL G A+ + +E+ +E+ + L+ + +
Sbjct: 357 LEEMEARG--CA-----PNDCTYNTLLHGLCKARLMDKGMEL-YELMKSSGVKLETNGYA 408
Query: 134 AMVDALLYSGSI 145
+V +L+ SG +
Sbjct: 409 TLVRSLVKSGKV 420
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
+K + + N +++ + EA + + + E+G+EPD ++YN LI K+ +++
Sbjct: 260 FKPDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEAR 319
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + + D G+ PD TY +L+ G + L ++ EM++
Sbjct: 320 MYLKTMVD-------AGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEA 362
>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
Length = 1003
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 30/153 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N NA+I+ + +R D+A ++ E +GLEP+ ++Y ILI A K ++ +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
++++D G K C G G P +Y+ L+ G
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
DL S +E+ EM + + TFTA+++
Sbjct: 457 GDLSSCMELHREMAE-RGIAWNNYTFTALINGF 488
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL------- 298
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD FTY TL+ G DL + E M N+ LD +TA
Sbjct: 299 KQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQ-ENIRLDDVAYTA 357
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 358 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGD 402
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 32/164 (19%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLD- 68
W L + + N ++ +DE +++ + + G++PD +Y++LI+ K K+D
Sbjct: 171 WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDG 230
Query: 69 VTMPFNEQLKD----NG--------QKCSSG---------------GFHPDIFTYATLLM 101
F+E L NG C +G PD+ TY TL+
Sbjct: 231 ANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
G DL+ +++ EM S L D+ T+T ++D G +
Sbjct: 291 GLCKKGDLKQAHDLIDEM-SMKGLKPDKFTYTTLIDGCCKEGDL 333
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ LD + + G P
Sbjct: 158 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM-------LASGVQP 210
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + + EM L+ + TFT ++D +G + +
Sbjct: 211 DVYTYSVLINGLCKESKMDGANGLFDEM-LVKGLVPNGVTFTTLIDGHCKNGRVDLA--- 266
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 267 -----MEIYKQMLSQS-LLPDLITYNTLIYGLCKKGD 297
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI + L
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDL------- 292
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q +D + S G PD TY TL+ G DL++ E M N+ LD +TA
Sbjct: 293 KQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQ-ENIQLDDVGYTA 351
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E V R + GL P Y +++E + D
Sbjct: 352 LISGLCQEGRY---------LDAEKVLREMLSVGLKPDTITYTMIINEFCKKGD 396
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ +DE +++ ++ G++PD +Y++LI+ K K+D
Sbjct: 165 WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDD 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
+++ D G C +G PD+ TY TL+
Sbjct: 225 ANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
G DL+ +++ EM S L D+ T+T ++D G ++
Sbjct: 285 GLCRKGDLKQARDLIDEM-SMKGLKPDKITYTTLIDGXCKEGDLET 329
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A + ++ K GL P +S+N L++ I+ LD + + G PD++
Sbjct: 155 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMH-------ASGVQPDVY 207
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLD-KGLVPNGVTFTTLIDGHCKNGRVDLA------ 260
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 261 --MEIYKQMLSQS-LSPDLITYNTLIYGLCRKGD 291
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 2 FEENEIVN--REHW-KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNIL 57
E E++N EHW N+I + ++ R ++ EA ++ E V KG P + N+L
Sbjct: 506 LEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLL 565
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117
+ + + + F E+ C + G ++ + T++ GF +L + L ++
Sbjct: 566 LQSLCRDGRTHEARKFMEE-------CLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD 618
Query: 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177
+M N D T+T +VD L G I E++K++ + G+ P P Y
Sbjct: 619 DM-YLINKHADVFTYTTLVDTLGKKGRIAEA--------TELMKKML-HKGIDPTPVTYR 668
Query: 178 SMMH 181
+++H
Sbjct: 669 TVIH 672
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 31 QRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
+RI E +++ + E GL PD ++YN LI K D + F LKD +K G
Sbjct: 361 KRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWF---LKDAQEK----G 413
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
F D Y+ ++ + +++ EM S + D T+TA+V+ G +
Sbjct: 414 FRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEV 470
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I + R++EA ++LE + KG PD +SY ++ K K++
Sbjct: 311 NVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRI------- 363
Query: 75 EQLKDNGQKCSS-GGFHPDIFTYATL---LMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+++D +K + G PD TY TL L HA + L+ E +D+
Sbjct: 364 VEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEK----GFRIDKL 419
Query: 131 TFTAMVDALLYSGSI 145
++A+V AL G +
Sbjct: 420 GYSAIVHALCKEGRM 434
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63
NE++++ H + + AV+ +D+A ++L+ + G +P+++SY L++ +
Sbjct: 442 NEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCR 501
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
T K ++ E + + + S P+ TY+ ++ G R L ++V EM
Sbjct: 502 TGK---SLEAREMMNMSEEHWWS----PNSITYSVIMHGLRREGKLSEACDVVREM 550
>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKL-DVTMP 72
L++ N +I EA+ +D+A + +E +EK G PD+ SY I A K K +V +
Sbjct: 201 LDSHSFNILIHGYCEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVI 260
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRST 131
NE G+K G PD+ Y+ + A+ + LE+ +M K+ C D
Sbjct: 261 LNEM----GEK----GCEPDVIAYSIYIRALGKARKINEALEVYEKMNKNSCK--PDAKF 310
Query: 132 FTAMVDALLYSGSI 145
F+ ++ L SG +
Sbjct: 311 FSTLIYVLGRSGRL 324
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
K +T+ +N V+ A + +AY + + + DS S+NILI + + LD
Sbjct: 166 KKDTVALNMVMHALAKQGGAKDAYSVFLEFKDSITLDSHSFNILIHGYCEARMLDDARKT 225
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
E+++ + GF PD +Y + + KD +++ I+ EM K C
Sbjct: 226 MEEMEKH-------GFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGC 269
>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 15/120 (12%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
FE + +R W N++I + +++++Q+ E + E+G+EP +++NILI+
Sbjct: 242 FFENMDYRDRVSW-------NSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILIN 294
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ ++ K D M ++++ S PD+FT+ +++ GF LE+ EM
Sbjct: 295 SYSQSGKCDDAMELMKKME-------SFRIVPDVFTWTSMISGFAQNNRRSQALELFREM 347
>gi|356523566|ref|XP_003530408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Glycine max]
Length = 475
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 23 VIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
V++ +EAQ D A +L +E L D++ YN++I C K ++ + ++
Sbjct: 132 VLKLCKEAQLADMALWVLRKMEDTFNLHADTVMYNLVIRLCCKKGDIETALKLTSEM--- 188
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCC-NLILDRSTFTAMV 136
SS G PD+ TY ++ GF +A ++ S+L+ V + C NL++ +A++
Sbjct: 189 ----SSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLK-VMRLHGCSPNLVI----LSAIL 239
Query: 137 DALLYSGSIK 146
D SGS++
Sbjct: 240 DGFCRSGSME 249
>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 23 VIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
+I + ++ R+D A+++ + + EK L P L + L+ + K +LD +M +++
Sbjct: 238 MIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQ--- 294
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
G P Y +L+ F A L++ L I EMK + +T +V++
Sbjct: 295 ----GFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKK-AGFRPNYGLYTMVVESHAK 349
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM--MHELAARVD 188
SG ++ A+ +F ++ K G P P Y + MH + +VD
Sbjct: 350 SGKLET----AMSVFSDMEK-----AGFLPTPSTYSCLLEMHSASGQVD 389
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 24/217 (11%)
Query: 18 IVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+V +++++ +A R+D + ++ +E GL P + Y LI + +K KL+ + ++
Sbjct: 268 LVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDE 327
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K GF P+ Y ++ + L++ + + +M+ + ST++ ++
Sbjct: 328 MKK-------AGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEK-AGFLPTPSTYSCLL 379
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
+ SG + A+ ++ + +N GL P Y +++ LA + D+
Sbjct: 380 EMHSASGQVD----SAMKLYNSM-----TNAGLRPGLSTYTALLTLLANKKLVDVAAKVL 430
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
M + V A +LM + DG VDLAL
Sbjct: 431 LEM-----KAMGFSVDVSASDVLM-VYIKDGSVDLAL 461
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMP-F 73
+T + VI A ++D A+ + E ++ + PD +Y ILI + K L F
Sbjct: 479 DTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWF 538
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E ++D G P++ TY L+ + A+ + S E+ FEM I + T+T
Sbjct: 539 DEMVRD--------GCAPNVVTYTALIHAYLKARKMSSANEL-FEMMLSEGCIPNVVTYT 589
Query: 134 AMVDALLYSGSI-KVVGLYA 152
A++D SG I K +YA
Sbjct: 590 ALIDGHCKSGQIEKACQIYA 609
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
++++ E + N IV +A+I+ + ++DEA + + E+G P+ +Y+ LI K
Sbjct: 660 DVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719
Query: 65 KKLDVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTY 96
K+LD+ + ++ +N C G G HP++ TY
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTY 779
Query: 97 ATLLMGFRHAKDLQSLLEIVFEM--KSC 122
++ GF A + LE++ +M K C
Sbjct: 780 TAMIDGFGKAGKVDKCLELMRQMGAKGC 807
>gi|115440379|ref|NP_001044469.1| Os01g0785700 [Oryza sativa Japonica Group]
gi|20804913|dbj|BAB92593.1| drought-inducible protein 1OS [Oryza sativa Japonica Group]
gi|37179506|gb|AAN05726.2| drought-inducible protein 1OS [Oryza sativa Indica Group]
gi|113534000|dbj|BAF06383.1| Os01g0785700 [Oryza sativa Japonica Group]
gi|125527974|gb|EAY76088.1| hypothetical protein OsI_04014 [Oryza sativa Indica Group]
gi|125572269|gb|EAZ13784.1| hypothetical protein OsJ_03709 [Oryza sativa Japonica Group]
gi|215704731|dbj|BAG94759.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717015|dbj|BAG95378.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 434
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREA---QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+T+ N+++ A EA + + A++ + + P SYNIL+ A K L +
Sbjct: 161 STMTFNSLLAAYVEAGEFEALAAAFKEIPVSNPSVVPSVYSYNILLQALCKVPDLSAAL- 219
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
D G PD+ T+ TLL GF + D+ E V+EM + N++ D +
Sbjct: 220 ------DTMTLMEKSGISPDLVTFNTLLNGFYNHGDMDG-AEKVWEMITERNMVPDAKNY 272
Query: 133 TAMVDALLYSGSIK 146
A + L+ G I+
Sbjct: 273 NAKLRGLVAQGRIE 286
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA + RI++A ++E +EK G +PD++SYN LI K +L+ E + +
Sbjct: 273 NAKLRGLVAQGRIEDAVAVVEKMEKDGPKPDTISYNELIRGYCKDGRLEEAKKLFEDMAE 332
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAM 135
NG + G +H TL+ A +L L+ E+ NL +D + TA+
Sbjct: 333 NGYVANRGTYH-------TLIPCLVKAGELDYALKCCHEIYG-KNLRVDCFVLQEVVTAL 384
Query: 136 VDALLYSGSIKVVGL 150
V A + K+V L
Sbjct: 385 VTASRVEDATKIVEL 399
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 21/182 (11%)
Query: 6 EIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISAC 61
E++N+ E + N NA+I + +I +AY++L + +GL PD ++Y +LI+
Sbjct: 378 ELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEH 437
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K + + Q+ +N C HPDI TY T++ + + + +F+
Sbjct: 438 CKQGHITYALDLFNQMAEN--SC-----HPDIDTYTTIIAMY-CQQRQMEQSQQLFDKCL 489
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
L+ + T+T+M+ G AL +F +V+ C P P Y +++
Sbjct: 490 SIGLVPTKQTYTSMIAGYCRVGK----STSALKVFERMVQHGC-----LPDPITYGALIS 540
Query: 182 EL 183
L
Sbjct: 541 GL 542
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
++V +K N +I + ++ A +L VE+GL P++ +Y LI +
Sbjct: 311 KLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRG 370
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
D ++K G F P+I+TY ++ GF +Q + V M +
Sbjct: 371 GSFDRAFELMNKMKLEG-------FLPNIYTYNAIIGGFCKKGKIQQAYK-VLRMATSQG 422
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
L D+ T+T ++ G I YAL +F ++ + C
Sbjct: 423 LCPDKVTYTMLITEHCKQGHIT----YALDLFNQMAENSC 458
>gi|308799579|ref|XP_003074570.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
gi|116000741|emb|CAL50421.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
Length = 714
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKK 66
V E LN ++ A + +++ + ++ E+++K ++PD ++Y LIS C K +
Sbjct: 422 VEVETSTLNRLIHAAGLNGTKDESSVQATLELYEAMKKAEIKPDVITYGSLISTCAKARD 481
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEM-KSC 122
D + E+++ + G P+ + L+ +++ E + EM K
Sbjct: 482 GDTAIKMYEEMR-------AAGIEPNRVLFNVLISALGRCDRSEEAIHYFETMVEMAKKN 534
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVV 148
L+ R T+ A+ DA+L SG +++
Sbjct: 535 QALVPHRETYAALFDAILGSGGVELA 560
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N+ V N +I+ + EA +++ ++K G++PD +Y ISAC K ++
Sbjct: 725 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 784
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G K P+I TY TL+ G+ A + L EMK+ + D++ +
Sbjct: 785 EEMEALGVK-------PNIKTYTTLIKGWARASLPEKALSCYEEMKA-MGIKPDKAVYHC 836
Query: 135 MVDALLYSGSIKVVGLYA 152
++ +LL SI +Y+
Sbjct: 837 LLTSLLSRASIAEAYIYS 854
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 36 AYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E V++G++PD + YN +ISA +D + ++++ + P
Sbjct: 538 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHR-------PTTR 590
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
T+ ++ G+ + D++ LE VF+M C + TF +++ L+
Sbjct: 591 TFMPIIHGYAKSGDMRRSLE-VFDMMRRCGCVPTVHTFNGLINGLV 635
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
+L+ + A+I Q++DEA +L + E GL+P+++ Y ++ AC K +K +
Sbjct: 436 ELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIA 495
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS-- 130
+++ D+ GF P+I TY L+ G A S+ E + +L L+ +
Sbjct: 496 LLQKMMDS-------GFRPNIVTYCALVDGLCKAG---SIDEAISHFNKMVDLGLEPNVQ 545
Query: 131 TFTAMVDALLYSGSI 145
+TA+VD L +G +
Sbjct: 546 AYTALVDGLCKNGRL 560
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 22/175 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NT N ++ + + A+++ E + P+ ++NI+I K L
Sbjct: 162 NTRTCNHILLCLARERSSELAWRLFEQLPA---PNVFTFNIMIDFLCKEGDLAEARALLA 218
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++K G CS PD+ TY +L+ G+ +L+ + ++V EM+ C D T+ A+
Sbjct: 219 RMKAIG--CS-----PDVVTYNSLIDGYGKCGELEEVEKLVGEMRG-CGCRPDVVTYNAL 270
Query: 136 VD----------ALLYSGSIKVVGLYA-LCIFGEIVKRVCSNPGLWPKPHLYVSM 179
V+ A Y +K G+ A + F V C N + L+ M
Sbjct: 271 VNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQM 325
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+I+ +A ++EAY++ LE G P++ +YN LI ++ +
Sbjct: 561 DAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLE 620
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++++ G D FT+ ++ GF ++ +E +M+ L+ D TF
Sbjct: 621 KEMRQK-------GLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQR-IGLLPDIFTFNI 672
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
++ Y + +VG GEIV ++ S GL P Y + MH
Sbjct: 673 LIGG--YCKAFDMVGA------GEIVNKMYS-CGLDPDITTYNTYMH 710
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 35 EAYQIL--ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
E Q L E E+G+ PD++++ LI K + E+ + + S+ GF P+
Sbjct: 544 EGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNV-------EEAYEVFLEMSAIGFVPN 596
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
F Y +L+ G + L++ EM+ L+ D TF ++D G +K
Sbjct: 597 NFAYNSLIRGLCDCGRVTEALKLEKEMRQ-KGLLSDTFTFNIIIDGFCRRGQMK 649
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 30/131 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLE--PDSLSYNILISACIKTKKLDVTMPF 73
+ I N +++A ++ R++EA+QI ES+ + P+ ++Y +I+ K KLD +
Sbjct: 99 DIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIEL 158
Query: 74 NEQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRH 105
+ + + G Q+ + GF PD+ Y TLL G
Sbjct: 159 LDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCK 218
Query: 106 AKDLQSLLEIV 116
++ L LE+V
Sbjct: 219 SRRLDEALELV 229
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 23/170 (13%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N VI +A R +A ++V PD +++NIL+ A +K+ +++ E +
Sbjct: 67 VHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM 126
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLEIVFEMKSCCNLILDRSTFTA 134
+ Q P++ TY T++ G L LL+++ E C N+I T++
Sbjct: 127 HTSSQ------CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI----TYSV 176
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+V+ L +G + E+ +R G P +Y ++++ L
Sbjct: 177 LVEGLCKAGRTD----KGFTLLQEMTRR-----GFQPDVIMYNTLLNGLC 217
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N+++E ++++D A+++++ + E+G PD ++YN +I+ + +LD
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+Q+ +C PD+ TY+T++ G
Sbjct: 300 KQMV--AARCV-----PDVITYSTIIDGL 321
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
++ E N ++I +A ++D+AY++L+ + ++G+ P +N +I K
Sbjct: 19 QLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKA 78
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ + + + + G KC+ PDI T+ L+ + ++ +I M +
Sbjct: 79 GRFGDALGYFKTVA--GTKCT-----PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQ 131
Query: 125 LILDRSTFTAMVDALLYSGSI 145
+ + T+T +++ L G +
Sbjct: 132 CLPNVVTYTTVINGLCKDGKL 152
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMP-F 73
+T + VI A ++D A+ + E ++ + PD +Y ILI + K L F
Sbjct: 479 DTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWF 538
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E ++D G P++ TY L+ + A+ + S E+ FEM I + T+T
Sbjct: 539 DEMVRD--------GCAPNVVTYTALIHAYLKARKMSSANEL-FEMMLSEGCIPNVVTYT 589
Query: 134 AMVDALLYSGSI-KVVGLYA 152
A++D SG I K +YA
Sbjct: 590 ALIDGHCKSGQIEKACQIYA 609
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
++++ E + N IV +A+I+ + ++DEA + + E+G P+ +Y+ LI K
Sbjct: 660 DVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719
Query: 65 KKLDVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTY 96
K+LD+ + ++ +N C G G HP++ TY
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTY 779
Query: 97 ATLLMGFRHAKDLQSLLEIVFEM--KSC 122
++ GF A + LE++ +M K C
Sbjct: 780 TAMIDGFGKAGKVDKCLELMRQMGAKGC 807
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 39/185 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I+ +A ++D+ +++ + KG P+ ++Y +LI+ C LD
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLL 834
Query: 75 EQLKDN-------GQKCSSGGFH-------------------PDIFTYATLLMGFRHAKD 108
+++K G + GF+ P I Y L+ F A
Sbjct: 835 DEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGR 894
Query: 109 LQSLLEIVFEMKSCCNL-ILDRSTFTAMVDAL-----------LYSGSIKVVGLYALCIF 156
L+ LE+ EM SC + D+ +++++++L LY+ IK G+ L IF
Sbjct: 895 LELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIF 954
Query: 157 GEIVK 161
+VK
Sbjct: 955 FYLVK 959
>gi|215694797|dbj|BAG89988.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 930
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
N ++ +Q D A Q++ + E GL+PD Y LIS C K K+D F+E
Sbjct: 304 TFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 363
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ S G P++ TY+ L+ G A + + + S + DR F A++
Sbjct: 364 V--------SAGIEPNVNTYSALIDGCAKAGQVAKAFG-AYGIMSSKKVKPDRVVFNALI 414
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
A SG++ A + E+ + G P
Sbjct: 415 SACGESGAVA----RAFDVLSEMTAEASESKGSKP 445
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N I + + A ++ + + EA + + + P ++N+L+S C ++ D +
Sbjct: 269 MNKIHHASFLNACKKQRAVPEAVRFCKLIN---NPKMSTFNMLLSVCANSQDFDGALQVM 325
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ G PD Y TL+ + ++ E+ EM S + + +T++A
Sbjct: 326 VLLKE-------AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVS-AGIEPNVNTYSA 377
Query: 135 MVDALLYSGSI-KVVGLYAL 153
++D +G + K G Y +
Sbjct: 378 LIDGCAKAGQVAKAFGAYGI 397
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT N V+ A R+DEA + + ++K G P+ +YN++ K + +
Sbjct: 355 NTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEML 414
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLM--GFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E++ S G P+ T+ T+L G R +D + ++ MKS C + L R T+
Sbjct: 415 EEM-------SRSGCTPNRVTWNTMLAVCGKRGMEDY--VTRVLNGMKS-CGVELSRDTY 464
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++ A GS YA ++ E++ + G P Y ++++ L+ + D+
Sbjct: 465 NTLISAYGRCGSRT----YAFKMYDEMI-----SSGFTPCLTTYNALLNVLSRQGDWSTA 515
Query: 193 KSPYRRM 199
+S +M
Sbjct: 516 QSIVSKM 522
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+EPD + + +I+AC + LD + F E LK G P + TY LL F
Sbjct: 246 GVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHV-------PCVVTYNALLQVFGK 298
Query: 106 AKDLQSLLEIVFEMK-SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR-- 162
A + L ++ EM+ S C DA+ Y+ ++ G YA F E +
Sbjct: 299 AGNYTEALRVLKEMEDSGCQ-----------PDAVTYN---ELAGTYARAGFFEEAAKCL 344
Query: 163 -VCSNPGLWPKPHLYVSMMHELA--ARVD 188
++ GL P Y ++M A RVD
Sbjct: 345 DTMTSKGLLPNTFTYNTVMTAYANVGRVD 373
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ NA+++ +A EA ++L+ +E G +PD+++YN L + F E+
Sbjct: 287 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAG-------FFEE 339
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--------SCCNLIL- 127
+S G P+ FTY T++ + + + L + MK + NLI
Sbjct: 340 AAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFG 399
Query: 128 ---DRSTFTAMVDAL 139
+S FTAM++ L
Sbjct: 400 MLGKKSRFTAMLEML 414
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I+ +I +A R+++A + S+ E G + D+ +YNILI+ + K+L
Sbjct: 352 DAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELL 411
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
+++K+ G PD+ TY TLL G A D ++ E++ +M C ++ TF
Sbjct: 412 QEMKEVG-------IRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVI---TF 461
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+V G I AL I R G+ P +Y +++ L R D D+
Sbjct: 462 GTLVHGYCKVGKID----EALRIL-----RSMDESGIHPNNVIYNTLIDFLCKRGDVDL 511
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I ++ + +IDEA +IL S+ E G+ P+++ YN LI K +D+ +
Sbjct: 457 SVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELF 516
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+++K+ ++ T+ LL G R + E++ +M+
Sbjct: 517 DEMKEKSVPA-------NVTTFNALLKGLRDKNMPEKAFELMDQMR 555
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMP-F 73
+T + VI A ++D A+ + E ++ + PD +Y ILI + K L F
Sbjct: 479 DTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWF 538
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E ++D G P++ TY L+ + A+ + S E+ FEM I + T+T
Sbjct: 539 DEMVRD--------GCAPNVVTYTALIHAYLKARKMSSANEL-FEMMLSEGCIPNVVTYT 589
Query: 134 AMVDALLYSGSI-KVVGLYA 152
A++D SG I K +YA
Sbjct: 590 ALIDGHCKSGQIEKACQIYA 609
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
++++ E + N IV +A+I+ + ++DEA + + E+G P+ +Y+ LI K
Sbjct: 660 DVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719
Query: 65 KKLDVTMPFNEQLKDNGQK-------------CSSG---------------GFHPDIFTY 96
K+LD+ + ++ +N C G G HP++ TY
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTY 779
Query: 97 ATLLMGFRHAKDLQSLLEIVFEM--KSC 122
++ GF A + LE++ +M K C
Sbjct: 780 TAMIDGFGKAGKVDKCLELMRQMGAKGC 807
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 39/185 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I+ +A ++D+ +++ + KG P+ ++Y +LI+ C LD
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLL 834
Query: 75 EQLKDN-------GQKCSSGGFH-------------------PDIFTYATLLMGFRHAKD 108
+++K G + GF+ P I Y L+ F A
Sbjct: 835 DEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGR 894
Query: 109 LQSLLEIVFEMKSCCNL-ILDRSTFTAMVDAL-----------LYSGSIKVVGLYALCIF 156
L+ LE+ EM SC + D+ +++++++L LY+ IK G+ L IF
Sbjct: 895 LELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIF 954
Query: 157 GEIVK 161
+VK
Sbjct: 955 FYLVK 959
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 45/202 (22%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N ++ A+I+ +A ++D+A +L+ + + P+S +YN LI K +K+ +
Sbjct: 281 KANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALL 340
Query: 73 FNEQLKDNGQKCS----------------------------SGGFHPDIFTYATLLMGF- 103
E + G KC+ S G+ PD++ Y + F
Sbjct: 341 LMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFC 400
Query: 104 --RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
+ K+ + ++ ++FE ++ D T+T ++DA Y G +GL +++K
Sbjct: 401 TRGNIKEAEDMMSMMFER----GVMPDALTYTLVIDA--YGG----LGLLNPAF--DVLK 448
Query: 162 RVCSNPGLWPKPHLYVSMMHEL 183
R+ + G P H Y ++ L
Sbjct: 449 RM-FDTGCDPSHHTYSCLIKHL 469
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 45/203 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I + +D AY++L + E G+ PD +Y++ I K +++
Sbjct: 213 SVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLF 272
Query: 75 EQLKDNGQK-------------CSSGGFH---------------PDIFTYATLLMGFRHA 106
LK+ G K C +G P+ TY L+ G
Sbjct: 273 NSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKE 332
Query: 107 KDLQS---LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
+ +Q L+E + + C + T+T ++ A+L G YA I ++V
Sbjct: 333 RKVQEALLLMESMIQKGLKCTV----PTYTILIVAMLKEGDFD----YAHRILDQMV--- 381
Query: 164 CSNPGLWPKPHLYVSMMHELAAR 186
+ G P ++Y + +H R
Sbjct: 382 --SSGYQPDVYIYTAFIHAFCTR 402
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 30/131 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLE--PDSLSYNILISACIKTKKLDVTMPF 73
+ I N +++A ++ R++EA+QI ES+ + P+ ++Y +I+ K KLD +
Sbjct: 99 DIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIEL 158
Query: 74 NEQLKDNG----------------------------QKCSSGGFHPDIFTYATLLMGFRH 105
+ + + G Q+ + GF PD+ Y TLL G
Sbjct: 159 LDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCK 218
Query: 106 AKDLQSLLEIV 116
++ L LE+V
Sbjct: 219 SRRLDEALELV 229
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N VI+ +A R +A ++V PD +++NIL+ A +K+ +++ E +
Sbjct: 67 VHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM 126
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLEIVFEMKSCCNLILDRSTFTA 134
+ Q P++ TY T++ G L LL+++ E C N+I T++
Sbjct: 127 HTSSQ------CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI----TYSV 176
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+V+ L +G + E+ +R G P +Y ++++ L
Sbjct: 177 LVEGLCKAGRTD----KGFTLLQEMTRR-----GFQPDVIMYNTLLNGLC 217
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ N+++E ++++D A+++++ + E+G PD ++YN +I+ + +LD
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+Q+ +C PD+ TY+T++ G
Sbjct: 300 KQMV--AARCV-----PDVITYSTIIDGL 321
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
++ E N ++I +A ++D+AY++L+ + ++G+ P +N +I K
Sbjct: 19 QLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKA 78
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ + + + + G KC+ PDI T+ L+ + ++ +I M +
Sbjct: 79 GRFGDALGYFKTVA--GTKCT-----PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQ 131
Query: 125 LILDRSTFTAMVDALLYSGSI 145
+ + T+T +++ L G +
Sbjct: 132 CLPNVVTYTTVINGLCKDGKL 152
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +AVI+ +A R+D+AY +L+ + + G PD ++Y +I A K +LD
Sbjct: 292 SVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELF 351
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ + G C+S D+ Y L+ G+ A + + ++ EM
Sbjct: 352 QRMHERG--CAS-----DVVAYNILIRGYCRAAKVDEAIAMIEEM 389
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+I+A + R+DEA ++ + + E+G D ++YNILI + K+D +
Sbjct: 327 DVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMI 386
Query: 75 EQLKDNG 81
E++ G
Sbjct: 387 EEMAGRG 393
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 35/162 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ IV + I +A ++DEA + ++ +E G PD +SYN++I + K ++
Sbjct: 186 DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELM 245
Query: 75 EQLKDNGQKC-------------------------------SSGGFHPDIFTYATLLMGF 103
+Q + +KC +G P + TY+ ++ G
Sbjct: 246 DQAME--RKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGL 303
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
A L ++ +M+ + D T+TA++DA G +
Sbjct: 304 CKADRLDDAYIVLQKMRR-AGCVPDVVTYTAIIDAFCKVGRL 344
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILIS 59
IFE+ + + L ++ +IE + ++++A+ + S+ KG++P+ ++Y ++IS
Sbjct: 460 IFED---LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L +++++G P+ TY TL+ DL + +++ EM
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGN-------APNDCTYNTLIRAHLRDGDLTASAKLIEEM 569
Query: 120 KSCCNLILDRSTFTAMVDALL 140
KS C D S+ ++D LL
Sbjct: 570 KS-CGFSADASSIKMVIDMLL 589
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +N +I + AY +L V K G EPD+ ++N LI K+ +
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLV 181
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ +N G PD+ TY +++ G + D L+++ +M+ N+ D T++
Sbjct: 182 DRMVEN-------GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE-RNVKADVFTYST 233
Query: 135 MVDALLYSGSIKVVGLYALCIFGEI 159
++D+L G I A+ +F E+
Sbjct: 234 IIDSLCRDGCIDA----AISLFKEM 254
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT 64
+++ R + + ++I+ +R+D+ ++ ++ K GL ++++Y+IL+ ++
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+ + E+L Q+ S G PD+ TY LL G L+ LEI FE
Sbjct: 417 GKIKLA----EEL---FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEI-FEDLQKSK 468
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHE 182
+ L +T +++ + G ++ + CS P G+ P Y M+
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVE-----------DAWNLFCSLPCKGVKPNVMTYTVMISG 517
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV 229
L + R+M D +P + + L+ A L DG +
Sbjct: 518 LCKKGSLSEANILLRKMEEDGN---AP--NDCTYNTLIRAHLRDGDL 559
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K +T+ NA+I + ++ A++++ E VEKG +PD S+N +I K KLD M
Sbjct: 358 KPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMD 417
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E + G C PD+ +Y + G L+ I+ EM
Sbjct: 418 LLEDMPRRG--CP-----PDVLSYRIIFDGLCEMMQLKEATSILDEM 457
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+N+++ A + +++++ Q+ + PD+ ++NILI A LD ++++
Sbjct: 189 VNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQK 248
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G K P++ T+ TL+ G L+ L + +M + + S +T ++
Sbjct: 249 RGVK-------PNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGF 301
Query: 140 LYSGSI 145
G +
Sbjct: 302 CGVGEL 307
Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA 60
F+ E + + KL + V + +I A + R +E IL + E G +PD+++YN +I+
Sbjct: 311 FKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIING 370
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K L+ +++ + G K PD+F++ T++
Sbjct: 371 HCKENDLESAHRVMDEMVEKGCK-------PDVFSFNTII 403
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ I E + K GL+PD YN+LI A K +D + E+++ + S+ F P
Sbjct: 498 AFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRP--- 554
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMK--SCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
++ GF A D++ L I+ M+ C ++ T+ A++ L+ ++ A
Sbjct: 555 ----IIEGFAVAGDMKRALNILDLMRRSGCAPTVM---TYNALIHGLIKKNQVE----RA 603
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+ + ++ S G+ P H Y +M AA D
Sbjct: 604 VSVLNKM-----SIAGITPNEHTYTIIMRGYAANGD 634
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT V N +I+ + EA +++ + E G+ P+ +Y I+AC K +
Sbjct: 688 NTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVI 747
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++ D G K P++ TY TL+ G+ A L+ EMK L D + +
Sbjct: 748 EEMADVGLK-------PNLKTYTTLIKGWAKASLPDRALKSFEEMK-LAGLKPDEAAYHC 799
Query: 135 MVDALLYSGSI----KVVGLYALC 154
+V +LL ++ G+ ++C
Sbjct: 800 LVTSLLSRATVMEGSTYTGILSIC 823
>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial; Flags: Precursor
gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E E GL PDS+SYNILI C L++ + +++ G P +TY TL+
Sbjct: 317 EMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMV-------PTFYTYNTLI 369
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160
G +++ ++ E++ ++LD T+ +++ G K A + E++
Sbjct: 370 HGLFMENKIEAAEILIREIRE-KGIVLDSVTYNILINGYCQHGDAK----KAFALHDEMM 424
Query: 161 KRVCSNPGLWPKPHLYVSMMHELAAR 186
G+ P Y S+++ L +
Sbjct: 425 -----TDGIQPTQFTYTSLIYVLCRK 445
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 63/109 (57%), Gaps = 9/109 (8%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ +EA +++ E +G++PD +SYN LIS +KK D F ++D + S GF+
Sbjct: 517 KFEEARELMGEMKRRGIKPDHISYNTLISG--YSKKGDTKHAF--MVRD---EMLSLGFN 569
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
P + TY LL G ++ + E++ EMKS ++ + S+F ++++A+
Sbjct: 570 PTLLTYNALLKGLSKNQEGELAEELLREMKS-EGIVPNDSSFCSVIEAM 617
>gi|302803225|ref|XP_002983366.1| hypothetical protein SELMODRAFT_445481 [Selaginella moellendorffii]
gi|300149051|gb|EFJ15708.1| hypothetical protein SELMODRAFT_445481 [Selaginella moellendorffii]
Length = 758
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
K L+P+ SYNI+I C+++K + ++L+DN G PD TY +L+
Sbjct: 546 KNLKPNLHSYNIMIYGCLRSKDVTYANELLKRLQDN-------GLSPDSVTYNSLIKVLC 598
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
A +L+S LE++ M + D +F ++ A G I ++
Sbjct: 599 AANELESALEVIQTMDR-TGIEADIYSFNTIIGAAAVRGRIDMI 641
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT N V+ A R+DEA + + ++K G P+ +YN++ K + +
Sbjct: 355 NTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEML 414
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLM--GFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E++ S G P+ T+ T+L G R +D + ++ MKS C + L R T+
Sbjct: 415 EEM-------SRSGCTPNRVTWNTMLAVCGKRGMEDY--VTRVLNGMKS-CGVELSRDTY 464
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
++ A GS YA ++ E++ + G P Y ++++ L+ + D+
Sbjct: 465 NTLISAYGRCGSRT----YAFKMYDEMI-----SSGFTPCLTTYNALLNVLSRQGDWSTA 515
Query: 193 KSPYRRM 199
+S +M
Sbjct: 516 QSIVSKM 522
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+EPD + + +I+AC + LD + F E LK G P + TY LL F
Sbjct: 246 GVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHV-------PCVVTYNALLQVFGK 298
Query: 106 AKDLQSLLEIVFEMK-SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR-- 162
A + L ++ EM+ S C DA+ Y+ ++ G YA F E +
Sbjct: 299 AGNYTEALRVLKEMEDSGCQ-----------PDAVTYN---ELAGTYARAGFFEEAAKCL 344
Query: 163 -VCSNPGLWPKPHLYVSMMHELA--ARVD 188
++ GL P Y ++M A RVD
Sbjct: 345 DTMTSKGLLPNTFTYNTVMTAYANVGRVD 373
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ NA+++ +A EA ++L+ +E G +PD+++YN L + F E+
Sbjct: 287 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAG-------FFEE 339
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--------SCCNLIL- 127
+S G P+ FTY T++ + + + L + MK + NLI
Sbjct: 340 AAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFG 399
Query: 128 ---DRSTFTAMVDAL 139
+S FTAM++ L
Sbjct: 400 MLGKKSRFTAMLEML 414
>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
Japonica Group]
gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
Length = 551
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
V++ ++ R+ A Q+L+ + + G++ ++L YN L+ A + K D + +++ G
Sbjct: 149 VVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEG 208
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
P + TY L+ G A+D+ +E VFE NL D ++++++A
Sbjct: 209 -------IEPTVGTYTILVDGLSAARDITK-VEAVFEEMKSKNLSGDVYFYSSVINAYCR 260
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+G+++ A +F E C G+ P H Y ++++
Sbjct: 261 AGNVR----RASEVFDE-----CVGNGIEPNEHTYGALIN 291
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA-CIKT 64
I+ + +L+ N + R A R+DEA +L +EKG+ P+ +SY LIS C +
Sbjct: 343 IMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEG 402
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
++ F E + G P + TY ++ G+ ++ EM+
Sbjct: 403 DMVEARRLFREM--------AGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEK-KG 453
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L+ D ++ A+V +G + V AL +F E+ +R G P Y +++ LA
Sbjct: 454 LVPDIYSYAALVHGHCVNGKVDV----ALRLFEEMKQR-----GSKPNLVAYTALISGLA 504
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 21/128 (16%)
Query: 17 TIVMNAVIEAS--REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
++M+ I+ REA+R E +KGL PD SY L+ K+DV +
Sbjct: 427 NVMMDGYIKKGSIREAERFKN-----EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLF 481
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRST 131
E++K G K P++ Y L+ G AK+ +S E F++ L D +
Sbjct: 482 EEMKQRGSK-------PNLVAYTALISGL--AKEGRS--EEAFQLYDNMLGDGLTPDDAL 530
Query: 132 FTAMVDAL 139
++A+V +L
Sbjct: 531 YSALVGSL 538
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 23/183 (12%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE + E + I N++I + +RI +A++ L + ++GL+P+ ++Y+ LI
Sbjct: 308 VFEEMKDAGCEP---DVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLID 364
Query: 60 A-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
A C L+ F + ++ G P+ FTY +L+ DL ++ E
Sbjct: 365 AFCKAGMLLEANKFFVDMIRV--------GLQPNEFTYTSLIDANCKIGDLNEAFKLESE 416
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
M+ + L+ T+TA++D L G ++ A +FG ++K G +Y S
Sbjct: 417 MQQ-AGVNLNIVTYTALLDGLCEDGRMR----EAEELFGALLK-----AGWTLNQQIYTS 466
Query: 179 MMH 181
+ H
Sbjct: 467 LFH 469
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N VI ++ A + E ++ KGL PD ++YN LI K L + E++KD
Sbjct: 255 NMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKD 314
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G PD+ TY +L+ F + + E + MK L + T++ ++DA
Sbjct: 315 -------AGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQ-RGLQPNVVTYSTLIDAF 366
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+G + L A F ++++ GL P Y S++
Sbjct: 367 CKAGML----LEANKFFVDMIR-----VGLQPNEFTYTSLI 398
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
LN + A+++ E R+ EA ++ ++ K G + Y L IK K ++ M
Sbjct: 424 LNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDI 483
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++ K PD+ Y T + G +++ + ++ EM C L + +T
Sbjct: 484 LEEMNKKNLK-------PDLLLYGTKIWGLCRQNEIEDSMAVIREMMD-CGLTANSYIYT 535
Query: 134 AMVDALLYSG 143
++DA G
Sbjct: 536 TLIDAYFKVG 545
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 13 WKLNTI-VMNAVIEASREAQRIDEAYQ-------ILESVEKGLEPDSLSYNILISACIKT 64
WK+N V+ V + R+ ++ + + V GL P +YN++I +
Sbjct: 205 WKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLARE 264
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
L+ E++K + G PDI TY +L+ G+ L + + EMK
Sbjct: 265 GDLEAARSLFEEMK-------AKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMK 313
>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 543
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++I A ++ +A ++ + + KG P+ ++YN LI +TK ++ M F
Sbjct: 270 NVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFL 329
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--------SCCNLI 126
++ +N G PD+ T++TL+ GF A + E+ F M C +I
Sbjct: 330 GEMVNN-------GLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAII 382
Query: 127 LD 128
LD
Sbjct: 383 LD 384
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 32/170 (18%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ + +DE +++ +++ G++PD +Y++LI+ K K+D
Sbjct: 165 WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
+++ DNG C +G PD+ TY TL+
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
G DL+ +++ EM S L D+ T+T ++D G ++ Y
Sbjct: 285 GLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N V++ ++ A +I +S ++KG+EPD +SY LI+ ++ KK+D M
Sbjct: 317 NEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLF 376
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMG 102
++ NG K P I T + LL G
Sbjct: 377 REISQNGLK-------PSIVTCSVLLRG 397
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 1 IFEENEIVNREHW--KL--------NTIVMNAVIEASREAQRIDEAYQILESVEKGL-EP 49
+F EN++ + H KL + ++ V++ + +A+ +L +E+G+ +P
Sbjct: 152 LFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKP 211
Query: 50 DSLSYNILISACIKTKKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108
D+ YNI+I A K LD T NE + N PDI TY +L+ G
Sbjct: 212 DTCIYNIVIDAFCKDGMLDGATSLLNEMKQKN--------IPPDIITYTSLIDGLGKLSQ 263
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ + + EM N+ D TF +++D L G ++
Sbjct: 264 WEKVRTLFLEMIH-LNIYPDVCTFNSVIDGLCKEGKVE 300
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 20 MNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQL 77
N+VI+ + ++++A +I+ +EKG+EP+ ++YN+++ C++ + F+ +
Sbjct: 286 FNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMI 345
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
G PDI +Y L+ G+ K + +++ E+
Sbjct: 346 DK--------GIEPDIISYTALINGYVEKKKMDKAMQLFREI 379
Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ R N + AVI + ++D+A+ E + GL PD ++Y +IS +
Sbjct: 449 LERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGL 508
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
LD + KD +K G PD TY ++ GF
Sbjct: 509 LD-------EAKDMLRKMEDNGCLPDNRTYNVIVRGF 538
>gi|221503954|gb|EEE29631.1| PPR repeat-containing protein, putative [Toxoplasma gondii VEG]
Length = 1945
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
+GL+P++++Y + A + ++ + E++K GQ P+ Y+T++ GF
Sbjct: 1048 RGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQ------VPPNTIMYSTIIKGFA 1101
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+K L L++ EM+ + ++ TF ++VDA G++
Sbjct: 1102 QSKQLDRALKMYAEMQQ-NGVAINTVTFNSIVDACARVGAM 1141
>gi|237840063|ref|XP_002369329.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
gi|211966993|gb|EEB02189.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
Length = 1945
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
+GL+P++++Y + A + ++ + E++K GQ P+ Y+T++ GF
Sbjct: 1048 RGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQ------VPPNTIMYSTIIKGFA 1101
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+K L L++ EM+ + ++ TF ++VDA G++
Sbjct: 1102 QSKQLDRALKMYAEMQQ-NGVAINTVTFNSIVDACARVGAM 1141
>gi|297825903|ref|XP_002880834.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326673|gb|EFH57093.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 797
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA-CIKTKKLDVTMP 72
L+ + N +A + R++EA ++L+ + +KG+ PD ++Y LI C+K K +D
Sbjct: 385 LDRVCYNVAFDALSKLGRVEEAIELLQEMKDKGIVPDVINYTTLIDGYCLKGKVVDALDL 444
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+E + G PD+ TY L+ G +++LEI MK+
Sbjct: 445 IDEMI--------GNGTSPDLITYNVLVSGLARNGHEEAVLEIYERMKA 485
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+++ E ++ +A + V++G P ++SYN+LI L + F
Sbjct: 238 NVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFF 297
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-C--NLILDRST 131
+K N P+ TY+TL+ GF +A DL + I EMKS C N+++
Sbjct: 298 NSMKRNA-------LLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVV---- 346
Query: 132 FTAMVDAL 139
+T M+D L
Sbjct: 347 YTNMIDVL 354
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ + + D+A ++L+ ++ KGL+PD ++Y+ L+ + K+D + F
Sbjct: 458 ITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHD 517
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTA 134
L++ G K P+ TY ++++G A+ ++ + M + C +++
Sbjct: 518 LEEMGVK-------PNAITYNSIMLGLCKARQTVRAIDFLAYMVARGC---KPTETSYMI 567
Query: 135 MVDALLYSGSIK 146
+++ L Y G K
Sbjct: 568 LIEGLAYEGLAK 579
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ A + ++++ A + L+ V +G PD ++YN L++A K K+DV +
Sbjct: 386 NSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 445
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL G CS P + TY T++ G ++++ EMK L D T++
Sbjct: 446 NQLGSKG--CS-----PVLITYNTVIDGLSKVGKTDDAIKLLDEMKG-KGLKPDIITYST 497
Query: 135 MVDALLYSGSI 145
+V L G +
Sbjct: 498 LVGGLSREGKV 508
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 110/243 (45%), Gaps = 34/243 (13%)
Query: 3 EENEIVNREHWK---LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILI 58
E E+++R+ + + I +IEA+ + + +A ++L+ + +KG +PD ++YN+LI
Sbjct: 230 EAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLI 289
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ K +LD + F + S G P++ T+ +L + + E
Sbjct: 290 NGICKEGRLDEAIRFLNHM-------PSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAE 342
Query: 119 M--KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
M K C ++ TF +++ L G I A+ + ++ + C+ L P L+
Sbjct: 343 MIRKGCSPSVV---TFNILINFLCRKGLIG----RAIDVLEKMPQHGCTPNSLSYNPLLH 395
Query: 177 VSMMHELAAR-VDY-DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+ R ++Y DI+ S R +PD + L+ A DG+VD+A++
Sbjct: 396 ALCKDKKMERAIEYLDIMVS--RGCYPDIV----------TYNTLLTALCKDGKVDVAVE 443
Query: 235 KLS 237
L+
Sbjct: 444 ILN 446
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKT 64
++++R + + N ++ ++ ++ EA ++L+ +++ PD ++Y ILI A K
Sbjct: 201 QLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKE 260
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ M ++++D G K PD+ TY L+ G L + + M S
Sbjct: 261 SGVGQAMKLLDEMRDKGCK-------PDVVTYNVLINGICKEGRLDEAIRFLNHMPS 310
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISA-CIKTKKLDV 69
W++ + +N +I+ + +R D+A ++ E G PD SYN LI C++ K +
Sbjct: 125 WRVQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEA 184
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
D G CS P++ +Y+T++ GF ++ + EM D
Sbjct: 185 LELLLHMTADGGYNCS-----PNVVSYSTIIDGFFKEGEVDKAYFLFDEMIG-QGFPPDV 238
Query: 130 STFTAMVDAL 139
T+++++D L
Sbjct: 239 VTYSSLIDGL 248
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKT 64
E++NR + I MN +++ + R+ EA + V G++P+ +SYN LI
Sbjct: 473 EMINR-GIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFV 531
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K+D E +K + S G PD +TY LL G+ ++ L + EM
Sbjct: 532 GKMD------ESIK-QFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREM 579
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 19/189 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT N +I +++EA ++L+ + GL+PD ++Y +LI K +
Sbjct: 272 NTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVF 331
Query: 75 EQLKDNGQKCSSGGFHPDIFTYAT--LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + GQK +S +H + YAT L+ R DL I FE ++ LI +
Sbjct: 332 DSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKH 391
Query: 133 TAMVDALLYSGSIKVVGL-----------YALCIFGEIVKRV-----CSNPGLWPKPHLY 176
A+ A+ ++ GL + LC G + V + GL P +
Sbjct: 392 GAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISF 451
Query: 177 VSMMHELAA 185
S++H L +
Sbjct: 452 TSLIHGLCS 460
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +++I+ +AQ +++A IL+ + +KG+ P++ +YNI+I +L+ +
Sbjct: 237 DVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLL 296
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
+K S G PD+ TY L+
Sbjct: 297 -------KKMSGSGLQPDVVTYILLI 315
>gi|221483021|gb|EEE21345.1| PPR repeat-containing protein, putative [Toxoplasma gondii GT1]
Length = 1945
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
+GL+P++++Y + A + ++ + E++K GQ P+ Y+T++ GF
Sbjct: 1048 RGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQ------VPPNTIMYSTIIKGFA 1101
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+K L L++ EM+ + ++ TF ++VDA G++
Sbjct: 1102 QSKQLDRALKMYAEMQQ-NGVAINTVTFNSIVDACARVGAM 1141
>gi|449519571|ref|XP_004166808.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 503
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N IV NA+I E +ID+++++L+S V G P+SL+YN++ S+ IK KK+ +V+ F
Sbjct: 328 NLIVYNAIIGLLSENSKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFF 387
Query: 74 NEQLKD 79
E +K+
Sbjct: 388 REMVKN 393
>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
+I +A R Y + + + K G++P YN ++ + IKT LD+ + E + +G
Sbjct: 201 LIRMHSDANRGLRVYYVYQKMVKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYEDFRRDG 260
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALL 140
S TY L+ G A ++ ++E++ M+ NL D +TAMV AL
Sbjct: 261 LVEES-------VTYMILIKGLCKAGRIEEMMEVLGRMRE--NLCKPDVFAYTAMVRALA 311
Query: 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD--YDIVKSPY 196
G++ L ++ E+ G+ P YV+++ L RVD Y++ K
Sbjct: 312 GEGNLDA----CLRVWEEM-----KRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFKEMK 362
Query: 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240
R G +L+EA + DG++ LA D L + +
Sbjct: 363 GRRILIDRGIYG---------ILVEAFVADGKIGLACDLLKDLV 397
>gi|110288710|gb|AAP52447.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215694798|dbj|BAG89989.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 735
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
N ++ +Q D A Q++ + E GL+PD Y LIS C K K+D F+E
Sbjct: 109 TFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 168
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ S G P++ TY+ L+ G A + + + S + DR F A++
Sbjct: 169 V--------SAGIEPNVNTYSALIDGCAKAGQVAKAFG-AYGIMSSKKVKPDRVVFNALI 219
Query: 137 DALLYSGSI 145
A SG++
Sbjct: 220 SACGESGAV 228
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N I + + A ++ + + EA + + + P ++N+L+S C ++ D +
Sbjct: 74 MNKIHHASFLNACKKQRAVPEAVRFCKLIN---NPKMSTFNMLLSVCANSQDFDGALQVM 130
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ G PD Y TL+ + ++ E+ EM S + + +T++A
Sbjct: 131 VLLKE-------AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVS-AGIEPNVNTYSA 182
Query: 135 MVDALLYSGSI-KVVGLYAL 153
++D +G + K G Y +
Sbjct: 183 LIDGCAKAGQVAKAFGAYGI 202
>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 909
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 30/153 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N NA+I+ + +R D+A ++ E +GLEP+ ++Y ILI A K ++ +
Sbjct: 360 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 419
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
++++D G K C G G P +Y+ L+ G
Sbjct: 420 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 479
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
DL S +E+ EM + + TFTA+++
Sbjct: 480 GDLSSCMELHREMAE-RGIAWNNYTFTALINGF 511
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E + +GL+PD +Y I+ + KL D + F Q ++ + GF PD+ TY
Sbjct: 437 EMLNRGLQPDRFAY---ITRIVGELKLGDPSKAFGMQ-----EEMLARGFPPDLITYNVF 488
Query: 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159
+ G +L+ E+V +M L+ D T+T+++ A L +G ++ A +F E+
Sbjct: 489 IDGLHKLGNLKEASELVKKMLY-NGLVPDHVTYTSIIHAHLMAGHLR----KARALFLEM 543
Query: 160 VKRVCSNPGLWPKPHLYVSMMHELAAR 186
+ + G++P Y ++H A R
Sbjct: 544 LSK-----GIFPSVVTYTVLIHSYAVR 565
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I I EA+ + + + L P ++YN LI + LDV M +++
Sbjct: 346 NTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIK 405
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+G PD+FT+ T + GF +L E+ EM
Sbjct: 406 HGPD-------PDVFTFTTFVRGFCKMGNLPMAKELFDEM 438
>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g22960, mitochondrial; Flags: Precursor
gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 718
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNE 75
T N I A + RID+A ++L S+ PD +SYN L+ IK K + ++ F++
Sbjct: 343 TSTYNIYICALCDFGRIDDARELLSSMAA---PDVVSYNTLMHGYIKMGKFVEASLLFDD 399
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTA 134
+G HP I TY TL+ G + +L+ + EM + LI D T+T
Sbjct: 400 --------LRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTT--QLIFPDVITYTT 449
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
+V + +G++ + A ++ E++++ G+ P + Y +
Sbjct: 450 LVKGFVKNGNLSM----ATEVYDEMLRK-----GIKPDGYAYTT 484
>gi|356518708|ref|XP_003528020.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g79540-like [Glycine max]
Length = 535
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T+ + +E EA ++ +AY++L V G+ PD ++YN+LI+ K ++ + F
Sbjct: 173 LDTVSLQKKVEQMCEAGQLVDAYKLLTQVACSGVMPDIVTYNVLINGFCKAANINGALKF 232
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKD 108
+ +++ GF P+ TY TL+ G FR ++
Sbjct: 233 FKDMQNK-------GFSPNSVTYGTLIDGLFRIGRE 261
>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 855
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 11/143 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP 72
KLNT+ N+ I + D+A + S+ +K ++ DS++Y +LIS C K K +
Sbjct: 499 KLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALS 558
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI--VFEMKSCCNLILDRS 130
F E++ S + I Y+ + A L ++E F + D
Sbjct: 559 FMEEMMHLKLPMSKEVYSSIICAYS------KQASALGQIIEAESTFNLMKSLGCSPDVV 612
Query: 131 TFTAMVDALLYSGSIKVVGLYAL 153
T+TAM+DA Y+ + K LYAL
Sbjct: 613 TYTAMLDA--YNAAEKWEKLYAL 633
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 45 KGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+GL+P+ +SYN L+ A + + + FNE +K NG F PD+ +Y +LL +
Sbjct: 356 EGLKPNIVSYNALLGAYAARGMENEALQVFNE-IKQNG-------FRPDVVSYTSLLNAY 407
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
++ Q EI F+M NL + ++ A++DA +G
Sbjct: 408 GRSRKPQKAREI-FKMIKRNNLKPNIVSYNALIDAYGSNG 446
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV 69
E K N + NA++ A +EA Q+ +++ G PD +SY L++A +++K
Sbjct: 356 EGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQK 415
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ +K N K P+I +Y L+ + L+ +EI+ EM+
Sbjct: 416 AREIFKMIKRNNLK-------PNIVSYNALIDAYGSNGLLEDAIEILREME 459
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ N ++ A + + +A E + KG + PD+ ++NI+I +K K+ D +
Sbjct: 256 VTHNIMLTAFKSGTQYSKALSYFELI-KGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFN 314
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
+K+ +C HPD+ T+ +++ + +++ E F M L + ++ A+
Sbjct: 315 SMKEKKSEC-----HPDVVTFTSMIHLYSVCGHIEN-CEAAFNMMLAEGLKPNIVSYNAL 368
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+ A G + AL +F EI + G P Y S+++
Sbjct: 369 LGAYAARG----MENEALQVFNEIKQN-----GFRPDVVSYTSLLN 405
>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
Length = 1014
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 30/153 (19%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N NA+I+ + +R D+A ++ E +GLEP+ ++Y ILI A K ++ +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
++++D G K C G G P +Y+ L+ G
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
DL S +E+ EM + + TFTA+++
Sbjct: 457 GDLSSAMELHREMAE-RGIAWNNYTFTALINGF 488
>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 418
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 32/170 (18%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ + +DE +++ +++ G++PD +Y++LI+ K K+D
Sbjct: 165 WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
+++ DNG C +G PD+ TY TL+
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
G DL+ +++ EM S L D+ T+T ++D G ++ Y
Sbjct: 285 GLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333
>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + + +I + RIDEA +L+ +EK L PD+ SY+ LISA K +LD+ +
Sbjct: 276 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 335
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ + NG C PDI Y T+L + LEI +++
Sbjct: 336 DYMISNG--CL-----PDIVNYNTILAALCKNGNANQALEIFNKLRG 375
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65
E + + + + I+ +I+ + I++A +++E +E EPD +YN +IS K
Sbjct: 92 ECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVN 151
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE--MKSCC 123
+++ ++K + GF PDI TY ++ + + L L+++ + + +C
Sbjct: 152 RIEAATQVLNRMK-------ARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM 204
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
++ T+T +++A + G I A+ + E++ R GL P + Y +++ +
Sbjct: 205 PTVI---TYTILIEATIVEGGIN----EAMKLLEEMLAR-----GLLPDMYTYNAIIRGM 252
Query: 184 AARVDYD 190
+D
Sbjct: 253 CKEGMWD 259
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLD-VTMPFNEQLK 78
N +I + A R++EA +I E +E +PD +S+N LI+ K +D M F E +
Sbjct: 323 NILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMRE 382
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMV 136
+ G PD+ TY+TL+ F ++ + EM + C I+ T+ ++
Sbjct: 383 E--------GLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIV---TYNILL 431
Query: 137 DALLYSG-SIKVVGLYA 152
D L SG + + V LYA
Sbjct: 432 DCLERSGRTAEAVDLYA 448
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 11/126 (8%)
Query: 22 AVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
+++E+ +A + EA +L + EK + D++ YN ++SA K KK E++K +
Sbjct: 254 SMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQD 313
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRSTFTAMVDAL 139
G PDIF+Y L+ F A ++ ++I E++ S C D +F ++++ L
Sbjct: 314 GPS-------PDIFSYNILISSFGRAGRVEEAVKIFEELENSSCK--PDIISFNSLINCL 364
Query: 140 LYSGSI 145
+G I
Sbjct: 365 GKNGDI 370
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
FE + R +KL+ N +++A + ++D+ Y + + ++ K EPD +Y I+I
Sbjct: 62 FEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRM 121
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K K D ++ +++ + G+ P++ Y T++ + + + + +F
Sbjct: 122 TGKIGKADESLTLFQEMTEK-------GYTPNLIAYNTMIQALANNRMVDKTI-FLFSKM 173
Query: 121 SCCNLILDRSTFTAMVDALLYSGSI 145
N + TF+ +++ L+ G +
Sbjct: 174 VENNCRPNGFTFSVILNVLVAEGQL 198
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAY-QILESVEKGLEPDSLSYNILIS 59
IFEE E K + I N++I + IDEA+ + E E+GL PD ++Y+ LI
Sbjct: 341 IFEELE---NSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIE 397
Query: 60 ACIKTKKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
KT K+++ F+E L + G P+I TY LL
Sbjct: 398 CFGKTDKVEMACRLFDEMLAE--------GCSPNIVTYNILL 431
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 32/170 (18%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ + +DE +++ +++ G++PD +Y++LI+ K K+D
Sbjct: 165 WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
+++ DNG C +G PD+ TY TL+
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
G DL+ +++ EM S L D+ T+T ++D G ++ Y
Sbjct: 285 GLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT + N +I+ + EA +++ +++ G++PD +Y I+AC K +
Sbjct: 332 NTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTI 391
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E++K S G P++ TY TL+ G+ A + L EMK L DR+ +
Sbjct: 392 EEMK-------SVGVKPNVKTYTTLINGWARASLPEKALSCFEEMK-LSGLKPDRAVYHC 443
Query: 135 MVDALLYSGSI 145
++ +LL ++
Sbjct: 444 LMTSLLSRATV 454
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 38/164 (23%)
Query: 36 AYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ I E ++ G++PD + YN +I+A K+D + ++++ K P
Sbjct: 142 AFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHK-------PTTR 194
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
T+ ++ GF +++ L++ D + SG I V Y
Sbjct: 195 TFMPIIHGFARKGEMKKALDV--------------------FDMMRMSGCIPTVHTYNAL 234
Query: 155 IFGEIVKRVCSN----------PGLWPKPHLYVSMMHELAARVD 188
I G + KR G+ P H Y ++MH A+ D
Sbjct: 235 ILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGD 278
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ +V N ++ +A ++ +AY +L+ + KG EP++ SY +LI + K ++L+
Sbjct: 269 DIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVF 328
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ NG C + D+ TY+TL+ GF ++ E++ EM
Sbjct: 329 VEMQRNG--CQA-----DLVTYSTLISGFCKWGKIKRGYELLDEM 366
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 31 QRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
++I EA ++E + G P +YN L++ K +L+ + ++ DNG C+
Sbjct: 48 KKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG--CT---- 101
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
PD+ TY +L+ G K ++ EM S L LD +TA++ LL +G I
Sbjct: 102 -PDVVTYTSLIDGLGKKKRSFEAYKLFKEMAS-RGLALDTVCYTALIRGLLQAGKI 155
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 29/135 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + ++ +I+ +A RI A +I +S+E +GL P+ + Y+ LI K +K+D +
Sbjct: 173 DVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 232
Query: 75 EQLKDN-------------GQKCSSG---------------GFHPDIFTYATLLMGFRHA 106
Q+K C SG G PD++TY L+ GF A
Sbjct: 233 AQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKA 292
Query: 107 KDLQSLLEIVFEMKS 121
+ + + +M S
Sbjct: 293 GNTDAACGVFDDMSS 307
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N +I+ ++ + A E +E G +PD +YNILIS K D
Sbjct: 243 DTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVF 302
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ--SLLEIVFEMKSCCNLILDRSTF 132
+ + + +CS P++ TY TL+ G + L SL + + C D +
Sbjct: 303 DDMSSS--RCS-----PNVVTYGTLISGLCKRRQLTKASLYYQHMKERGC---PPDSFVY 352
Query: 133 TAMVDALLYSGSIK 146
+++VD L SG ++
Sbjct: 353 SSLVDGLCKSGKLE 366
>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
Length = 551
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
V++ ++ R+ A Q+L+ + + G++ ++L YN L+ A + K D + +++ G
Sbjct: 149 VVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEG 208
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
P + TY L+ G A+D+ +E VFE NL D ++++++A
Sbjct: 209 -------IEPTVGTYTILVDGLSAARDITK-VEAVFEEMKSKNLSGDVYFYSSVINAYCR 260
Query: 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
+G+++ A +F E C G+ P H Y ++++
Sbjct: 261 AGNVR----RASEVFDE-----CVGNGIEPNEHTYGALIN 291
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISA-CIKT 64
I+ + +L+ N + R A R+DEA +L +EKG+ P+ +SY LIS C +
Sbjct: 343 IMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEG 402
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
++ F E + G P + TY ++ G+ ++ EM+
Sbjct: 403 DMVEARRLFREM--------AGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEK-KG 453
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L+ D ++ A+V +G + V AL +F E+ +R G P Y +++ LA
Sbjct: 454 LVPDIYSYAALVHGHCVNGKVDV----ALRLFEEMKQR-----GSKPNLVAYTALISGLA 504
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 21/128 (16%)
Query: 17 TIVMNAVIEAS--REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
++M+ I+ REA+R + E +KGL PD SY L+ K+DV +
Sbjct: 427 NVMMDGYIKKGSIREAERFKK-----EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLF 481
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRST 131
E++K G K P++ Y L+ G AK+ +S E F++ L D +
Sbjct: 482 EEMKQRGSK-------PNLVAYTALISGL--AKEGRS--EEAFQLYDNMLGDGLTPDDAL 530
Query: 132 FTAMVDAL 139
++A+V +L
Sbjct: 531 YSALVGSL 538
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
+N IV N +I+ +D+A +I +EK G+E D +YN L + ++D
Sbjct: 316 INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMD----- 370
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---NLILDRS 130
+ K+ + G P+ +Y TL+ + D+ + EM +L+
Sbjct: 371 --EAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLV---- 424
Query: 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
T+ M+D + GSI+ E K+ GL P + Y +++H
Sbjct: 425 TYNVMMDGYIKKGSIREA---------ERFKKEMEKKGLVPDIYSYAALVH 466
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 29 EAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88
EA+R+ E G EP ++YN+++ IK + F ++++ G
Sbjct: 406 EARRL-----FREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKK-------G 453
Query: 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK---SCCNLILDRSTFTAMVDALLYSG 143
PDI++YA L+ G + L + EMK S NL+ +TA++ L G
Sbjct: 454 LVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLV----AYTALISGLAKEG 507
>gi|110288709|gb|ABG65945.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|110288711|gb|ABG65946.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 614
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
N ++ +Q D A Q++ + E GL+PD Y LIS C K K+D F+E
Sbjct: 109 TFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 168
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+ S G P++ TY+ L+ G A + + + S + DR F A++
Sbjct: 169 V--------SAGIEPNVNTYSALIDGCAKAGQVAKAFG-AYGIMSSKKVKPDRVVFNALI 219
Query: 137 DALLYSGSI 145
A SG++
Sbjct: 220 SACGESGAV 228
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+N I + + A ++ + + EA + + + P ++N+L+S C ++ D +
Sbjct: 74 MNKIHHASFLNACKKQRAVPEAVRFCKLINN---PKMSTFNMLLSVCANSQDFDGALQVM 130
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
LK+ G K PD Y TL+ + ++ E+ EM S + + +T++A
Sbjct: 131 VLLKEAGLK-------PDCKLYTTLISTCAKCGKVDAMFEVFHEMVS-AGIEPNVNTYSA 182
Query: 135 MVDALLYSGSI-KVVGLYAL 153
++D +G + K G Y +
Sbjct: 183 LIDGCAKAGQVAKAFGAYGI 202
>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
Length = 723
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTIV N +++A ++ I+E + ++ KGL+P + +YNIL+ A + + D+
Sbjct: 378 NTIVYNTLMDAYNKSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLL 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++D G P++ ++ L+ + K + + F L ++TA
Sbjct: 438 REMEDL-------GLEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTA 490
Query: 135 MVDALLYSG 143
++ A SG
Sbjct: 491 LIHAYSVSG 499
>gi|222624701|gb|EEE58833.1| hypothetical protein OsJ_10405 [Oryza sativa Japonica Group]
Length = 483
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G+ PD SYNIL+ C K+ + E++K Q +G D+FTY+T++ F
Sbjct: 125 GVPPDLTSYNILLKTCCNAKEYKLAQEIYEEIKKKEQ---NGLLKLDVFTYSTMMKVFAD 181
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
AK + +I +M+S + L+ T++++++A SG
Sbjct: 182 AKMWKLASDIKQDMQS-AGVRLNLVTWSSLINAYANSG 218
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
+LN + +++I A + +D A +ILE + + G +P + +NI+++ C+K+ + D
Sbjct: 201 RLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCVKSCQYDRAFR 260
Query: 73 FNEQLKDNGQKCS----SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE---------M 119
K+ G K S G D F+Y H + +LL + F M
Sbjct: 261 LFYDWKEYGVKISLSPEQKGCFGDNFSYCE-----EHTSNSSTLLVVPFRPTVTTYNILM 315
Query: 120 KSC 122
K+C
Sbjct: 316 KAC 318
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL 67
+R N + A+++ +A ++D A+++L++ + G EP+ + Y+ LI K K+
Sbjct: 436 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNL 125
D Q+ KC G+ P + TY +L+ L ++++ +M SC
Sbjct: 496 DSAQEVFLQM----TKC---GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548
Query: 126 ILDRSTFTAMVDALLYSG 143
++ T+TAM+D L G
Sbjct: 549 VV---TYTAMIDGLCRIG 563
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ D+A+Q++ E + KG PD+ +Y+ +I+ K++ +++K G
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMK-------MVGVT 320
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFTAMVDALL 140
PD++TY L+ F A ++ + EM+S C ++ T+TA++ A L
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV---TYTALIHAYL 369
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+++ E ++ +A + V++G P ++SYN+LI L + F
Sbjct: 291 NVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFF 350
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-C--NLILDRST 131
+K N P+ TY+TL+ GF +A DL + I EMKS C N+++
Sbjct: 351 NSMKRNA-------LLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVV---- 399
Query: 132 FTAMVDAL 139
+T M+D L
Sbjct: 400 YTNMIDVL 407
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKT 64
+++ R K N I + +I+ A ++DEA ++L S V G++PD ++YN LI+ K
Sbjct: 503 DLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562
Query: 65 KKL-DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107
++ D + F E S G PDI TY +L G +
Sbjct: 563 SRMEDALVLFREM--------ESSGVSPDIITYNIILQGLFQTR 598
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTK 65
V ++ ++++ I +++ +R +A I+ + G P+ SYNIL+
Sbjct: 117 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDEN 176
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ + + + D+G C PD+ +Y T++ GF DL EM
Sbjct: 177 RSQEALELLQMMPDDGGDCP-----PDVVSYTTVINGFFKEGDLDKAYGTYHEM------ 225
Query: 126 ILDRS------TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
LDR T+ +++ AL + ++ A+ + +VK G+ P Y S+
Sbjct: 226 -LDRGILPNVVTYNSIIAALCKAQAMD----KAMEVLTSMVKN-----GVMPNCRTYNSI 275
Query: 180 MH 181
+H
Sbjct: 276 VH 277
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+TI N++I++ + R+ E+ ++ + V G++P+ ++Y+ LI K+D
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKL 536
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ G K PD TY TL+ G+ ++ L + EM+S
Sbjct: 537 LASMVSVGMK-------PDCVTYNTLINGYCKISRMEDALVLFREMES 577
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 29/117 (24%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++I A +AQ +D+A ++L S V+ G+ P+ +YN ++ + + + F
Sbjct: 233 NVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGF 103
+++ +G + C +G G P+I TY TLL G+
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349
>gi|384253024|gb|EIE26499.1| hypothetical protein COCSUDRAFT_59031 [Coccomyxa subellipsoidea
C-169]
Length = 431
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
+T+ + +++ +A + +EA +++++G L P + S NIL+SAC +T++
Sbjct: 67 STVHYHTLMDCQAKAGKAEEAIGTFKAMQQGGLPPTTWSLNILLSACARTRQPVRAKEIM 126
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L G K D+ T+ TLL F AK + ++ +M+ + DR T A
Sbjct: 127 EDLTSQGVKS-------DVMTWNTLLSAFARAKHIDGAYQVWQQMQQ-SGVTPDRFTQRA 178
Query: 135 MVDALLYSGSIKVV 148
+ +A ++G++ +
Sbjct: 179 LSEA--FAGNVAMA 190
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 32/166 (19%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ + +DE +++ +++ G++PD +Y++LI+ K K+D
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
+++ DNG C +G PD+ TY TL+
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
G DL+ +++ EM S L D+ T+T ++D G ++
Sbjct: 285 GLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTTLIDGSCKEGDLET 329
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+ A +I + + + L PD ++YN LI K L
Sbjct: 240 NGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL------- 292
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q +D + S G PD TY TL+ G DL++ LE M N+ LD +TA
Sbjct: 293 KQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIK-ENIRLDDVAYTA 351
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P+ Y +++E + D
Sbjct: 352 LISGLCQEGR---------SVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N ++ + + I A + +++ K GL P +S+N L++ IK LD +LK
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGF----RLK 194
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
+ Q + G PD++TY+ L+ G + E+ EM L+ + TFT ++D
Sbjct: 195 NAMQ---ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDG 250
Query: 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+G + V+ + EI K++ S L P Y ++++ L + D
Sbjct: 251 HCKNGRV-VLAM-------EIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 291
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 32/170 (18%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ + +DE +++ +++ G++PD +Y++LI+ K K+D
Sbjct: 165 WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
+++ DNG C +G PD+ TY TL+
Sbjct: 225 ANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
G DL+ +++ EM S L D+ T+T ++D G ++ Y
Sbjct: 285 GLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333
>gi|413941674|gb|AFW74323.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 876
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N++I + +EA ++L+ + + G EP +++N L+S+ ++ +LDV M EQ+++
Sbjct: 239 NSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYARSGELDVAMEMLEQMEE 298
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHA 106
+ G PD+ T+ +L+ GF H
Sbjct: 299 S-------GVAPDVVTWTSLVSGFVHG 318
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 32/170 (18%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + N ++ +DE +++ +++ G++PD +Y++LI+ K K+D
Sbjct: 165 WGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDY 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
++ DNG C +G PD+ TY TL+
Sbjct: 225 ANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
G DL+ +++ EM S L D+ T+T ++D G ++ Y
Sbjct: 285 GLCKKGDLKQAQDLIDEM-SMKGLKPDKVTYTTLIDGSCKEGDLETAFEY 333
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P ++S+N L++ I+ LD +LK+ Q + G P
Sbjct: 152 IKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGF----RLKNAMQ---ASGVQP 204
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + E+ EM L+ + TFT ++D +G + +
Sbjct: 205 DVYTYSVLINGLCKESKMDYANELFNEMLD-NGLVPNGVTFTTLIDGHCKNGRVDLA--- 260
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 261 -----MEIYKQMLSQS-LSPDLITYNTLIYGLCKKGD 291
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I Q + EA +L E V +GL+P+ ++YN LI + +KLD
Sbjct: 378 NVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEIL 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + GGF PD T TL+ L+ VFE S + D +T++
Sbjct: 438 EGM------VGDGGFIPDTCTLNTLIKAHCTMGKLEEAFS-VFEKMSELRVQPDSATYSV 490
Query: 135 MVDALLYSGSIK 146
+V +L G +
Sbjct: 491 LVRSLCQRGDFR 502
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIK 63
E+V+R K N I N +I+ EAQ++D+ +ILE + + G PD+ + N LI A
Sbjct: 404 EMVSRG-LKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCT 462
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG------FRHAKDLQSLL---E 114
KL+ E++ S PD TY+ L+ FR A++ L E
Sbjct: 463 MGKLEEAFSVFEKM-------SELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKE 515
Query: 115 IVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167
I+ C L+ + + M + L +G K A +F +++KR +P
Sbjct: 516 ILLHDVGCKPLV---AAYNPMFEYLCSNGKTK----KAERVFRQLMKRGTQDP 561
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T N +I +DE + + + + +PD ++YN L+ + K+ +
Sbjct: 306 DTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVV 365
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G S P++ TY TL+ G+ +D+ L ++ EM S L ++ T+
Sbjct: 366 K-----GMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVS-RGLKPNKITYNT 419
Query: 135 MVDAL 139
++ L
Sbjct: 420 LIQGL 424
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ + N+++ + R A Q+ + + G+ PD+ ++NILI +D F
Sbjct: 270 SVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWF 329
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTF 132
+++ KC PD+ TY TL+ G A ++ +V M K NL + T+
Sbjct: 330 FKEMSRF--KCD-----PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTY 382
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192
T ++ + AL + E+V R GL P Y +++ L D +
Sbjct: 383 TTLIRGYCMKQDMA----EALSLLAEMVSR-----GLKPNKITYNTLIQGLCEAQKLDKI 433
Query: 193 K 193
K
Sbjct: 434 K 434
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 11/133 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N I +I+ + R++EA +L+ + KGL +++ YN LISA K +K+ D F
Sbjct: 48 NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 107
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ SS G PDIFT+ +L+ G + L + +M +I + T+
Sbjct: 108 GDM--------SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML-LEGVIANTITYN 158
Query: 134 AMVDALLYSGSIK 146
++ A L G+++
Sbjct: 159 TLIHAFLRRGAMQ 171
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ I N +I+A A I++ + E + KGL P+++S NILI+ +T + + F
Sbjct: 187 LDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEF 246
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
L+D + G PDI TY +L+ G Q L +
Sbjct: 247 ---LRDMIHR----GLTPDIVTYNSLINGLCKTGRAQEALNL 281
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N +I I A + L + + +GL PD ++YN LI+ KT + +
Sbjct: 223 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 282
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
++L+ G PD TY TL+
Sbjct: 283 DKLQVE-------GICPDAITYNTLI 301
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I+ +AQ++ +A+++L++ + G EP+ + Y+ LI K K+D
Sbjct: 607 NVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVF 666
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFT 133
++ KC G+ P + TY +L+ L ++++ EM CN + T+T
Sbjct: 667 LRM----TKC---GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCN--PNVVTYT 717
Query: 134 AMVDALLYSGSIK 146
AM+D L G I+
Sbjct: 718 AMIDGLSKVGEIE 730
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 28/151 (18%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ ++A+QIL E + KG PD+ +Y +I+ + KK++ + +++K G +
Sbjct: 432 KFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMK-------RAGVN 484
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC-CN------------------LILDRST 131
PD++TY L+ F A ++ EM+S C+ LI
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDI 544
Query: 132 FTAMVDALLYSGSIKVVGLY-ALCIFGEIVK 161
F MVDA Y ++ L LC GEI K
Sbjct: 545 FHRMVDAACYPNAVTYSALIDGLCKAGEIQK 575
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
NT V N +I+ + EA +++ +++G ++PD +Y I+AC K +
Sbjct: 725 NTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMM 784
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ +G K P++ TY TL+ G+ A + L EMK L D++ +
Sbjct: 785 EEMETSGVK-------PNVKTYTTLIHGWARASLPEKALRCFQEMK-LAGLKPDKAVYHC 836
Query: 135 MVDALLYSGSIKVV----GLYALC 154
++ ALL ++ G+ ++C
Sbjct: 837 LMTALLSRATVTEAYVRPGILSIC 860
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ I E V K GL+PD + YN +I A +D + ++++ + +S F P
Sbjct: 535 AFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMP--- 591
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
++ GF A +++ L+ VF+M I TF A++ L+ ++ A+
Sbjct: 592 ----IIHGFARAGEMKRALD-VFDMMRRSGCIPTVHTFNALILGLVEKRQME----KAIE 642
Query: 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
I E+ + G+ P H Y ++MH AA D
Sbjct: 643 ILDEM-----ALAGVSPNEHTYTTIMHGYAALGD 671
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 26/177 (14%)
Query: 32 RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R D+A Q+L+++ ++ +EPD +S+N LI+A K+ L + E L + Q G
Sbjct: 9 RFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL-ELLHEVRQ----AGLR 63
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
PD TY TL+ +L + + EM S C D T+ AMV G +
Sbjct: 64 PDAITYNTLISACSQGSNLDDAVAVFEEMIASECR--PDLWTYNAMVSVHGRCGKAQEAE 121
Query: 150 LYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA--------RVDYDIVKSPYRR 198
L +F E+V++ G P Y S+++ A RV ++VK+ +R+
Sbjct: 122 L----MFKELVEK-----GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 169
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 33/147 (22%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP----------------FNEQLK 78
A ++L V + GL PD+++YN LISAC + LD + +N +
Sbjct: 50 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 109
Query: 79 DNGQKCSSG-------------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+G +C GF PD TY +LL F D++ + + E+
Sbjct: 110 VHG-RCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVK-AGF 167
Query: 126 ILDRSTFTAMVDALLYSGSIKV-VGLY 151
D T+ M+ G + + +GLY
Sbjct: 168 RKDGITYNTMIHMYGKMGRLDLALGLY 194
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 92/245 (37%), Gaps = 68/245 (27%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKK 66
+ R + + + NA I+ +A+R+ +A + + VE+G P++ SY++L+ K K+
Sbjct: 278 MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKE 337
Query: 67 LDVTMPFNEQLKDNGQ-------------KCSSGGF----------------HPDIFTYA 97
LD + EQ ++ Q C G F PD+F Y
Sbjct: 338 LDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYN 397
Query: 98 TLLMGFRHAKDLQSLLEIVFEM--KSCCNLIL---------------------------- 127
+L + + L+I +M ++CCN++
Sbjct: 398 VMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEG 457
Query: 128 ---DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
D T+ +VDA+ G AL +F E VK C P + L ++HE
Sbjct: 458 FIPDFVTYGTLVDAMCKCGKSAA----ALELFEEAVKGGCV-PDVVTYSALITGLVHENM 512
Query: 185 ARVDY 189
A Y
Sbjct: 513 AEEAY 517
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ + N+ I+ + R+DEA + L + + PD +SY +I+ K+ LD +
Sbjct: 149 DVVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDVVSYTTVINGLCKSGDLDSASRMLD 206
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
Q+ + G C+ PD+ TY++L+ GF +++ + ++ M
Sbjct: 207 QMTNRG--CT-----PDVVTYSSLIDGFCKGGEVERAMGLLDSM 243
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
+ H + +++ +A R +A ++L+ + +KG P+ +YN+++ + +KLD
Sbjct: 73 KNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLD 132
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
E++ + G+ PD+ TY + + G + + + M + D
Sbjct: 133 EAKKMLEEM-------AVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP----VTPD 181
Query: 129 RSTFTAMVDALLYSGSI 145
++T +++ L SG +
Sbjct: 182 VVSYTTVINGLCKSGDL 198
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 32/170 (18%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
W L + + N ++ + +DE +++ +++ G++PD +Y++LI+ K K+D
Sbjct: 165 WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224
Query: 70 TMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYATLLM 101
+++ DNG C +G PD+ TY TL+
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
G DL+ +++ EM S L D+ T+T ++D G ++ Y
Sbjct: 285 GLCKKGDLKQAQDLIDEM-SMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 13/148 (8%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ + + D+A ++L+ + KGL+PD ++Y+ L+ + K+D + F
Sbjct: 295 ITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHD 354
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE-IVFEMKSCCNLILDRSTFTAM 135
L+ G K P+ TY +++G A+ ++ + + ++ C +++T +
Sbjct: 355 LEVLGVK-------PNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPT--EASYTIL 405
Query: 136 VDALLYSGSIK--VVGLYALCIFGEIVK 161
++ L Y G K + L LC+ G + K
Sbjct: 406 IEGLAYEGLAKEALELLNELCLRGVVKK 433
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+ A +LE + K G P+SLSYN L+ K KK++ + + ++ +S G +P
Sbjct: 205 LGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKM-------TSRGCYP 257
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDAL 139
DI TY TLL + + +E++ ++ K C +++ T+ ++D L
Sbjct: 258 DIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLI---TYNTVIDGL 304
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ + ++++ A + L + +G PD ++YN L++A K K+D +
Sbjct: 223 NSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELL 282
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL SS G P + TY T++ G +++ EM++ L D T+++
Sbjct: 283 NQL-------SSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRA-KGLKPDIITYSS 334
Query: 135 MVDALLYSGSI 145
+V L G +
Sbjct: 335 LVGGLSREGKV 345
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL 67
+R N + A+++ +A ++D A+++L++ + G EP+ + Y+ LI K K+
Sbjct: 371 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 430
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNL 125
D Q+ KC G+ P + TY +L+ L ++++ +M SC
Sbjct: 431 DSAQEVFLQM----TKC---GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 483
Query: 126 ILDRSTFTAMVDALLYSG 143
++ T+TAM+D L G
Sbjct: 484 VV---TYTAMIDGLCRIG 498
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ D+A+Q++ E + KG PD+ +Y+ +I+ K++ +++K G
Sbjct: 203 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMK-------MVGVT 255
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFTAMVDALL 140
PD++TY L+ F A ++ + EM+S C ++ T+TA++ A L
Sbjct: 256 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV---TYTALIHAYL 304
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 17/177 (9%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQIL--ESVEKGLEPDSLSYNILISACIKTKKL 67
R K++ I N +++ A R +EA +L E G P+++SY+I++ A
Sbjct: 185 RTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMS 244
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+ + + G CS PD+ Y+T++ GF + + + EM +
Sbjct: 245 QRALDLLQMMAKQGGACS-----PDVVAYSTVIHGFFNEGETGKACSLFHEMTR-QGVKP 298
Query: 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
D T+ ++DAL + ++ E+V R + G P Y M+H A
Sbjct: 299 DVVTYNLIIDALCKARAMDKA---------ELVLRQMTTDGAQPDTVTYSCMIHGYA 346
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 31/154 (20%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N++I+ ++D+A++IL+++E G+EPD ++YN L+ K +++ + +
Sbjct: 582 ITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFRE 641
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++ G K P+ TY +L G FR + + + R F M
Sbjct: 642 MQRKGVK-------PNTVTYGIMLAGLFRAGRTVAA-----------------RKKFHEM 677
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169
++ SG+ V +Y + I G + + C++ +
Sbjct: 678 IE----SGTTVTVSIYGI-ILGGLCRNNCADEAI 706
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 29/143 (20%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ R+ K + + N +I+A +A+ +D+A +L + G +PD+++Y+ +I +
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGR 350
Query: 67 LDVTMPFNEQLKDNG-------------QKCSSG---------------GFHPDIFTYAT 98
L ++K G C G G PDIF+Y T
Sbjct: 351 LKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCT 410
Query: 99 LLMGFRHAKDLQSLLEIVFEMKS 121
LL G+ ++ + MKS
Sbjct: 411 LLHGYASEGCFADMIGLFNSMKS 433
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100
E +G++PD ++YN++I A K + +D Q+ +G + PD TY+ ++
Sbjct: 290 EMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQ-------PDTVTYSCMI 342
Query: 101 MGFRHAKDLQSLLEIVFEMK 120
G+ L+ ++ EMK
Sbjct: 343 HGYATLGRLKEAAKMFREMK 362
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N V +I A + +D+A I E ++G+ PD ++Y+ +IS + +L D F
Sbjct: 439 NCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKF 498
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
N+ + + G P+ Y++++ GF L E+V EM
Sbjct: 499 NQMV--------ARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEM 536
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL 67
+R N + A+++ +A ++D A+++L++ + G EP+ + Y+ LI K K+
Sbjct: 436 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCC--N 124
D Q+ KC G+ P + TY +L+ L ++++ +M K C N
Sbjct: 496 DSAQEVFLQM----TKC---GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548
Query: 125 LILDRSTFTAMVDALLYSG 143
++ T+TAM+D L G
Sbjct: 549 VV----TYTAMIDGLCRIG 563
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 32 RIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
+ D+A+Q++ E + KG PD+ +Y+ +I+ K++ +++K G
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMK-------MVGVT 320
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--CCNLILDRSTFTAMVDALL 140
PD++TY L+ F A ++ + EM+S C ++ T+TA++ A L
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV---TYTALIHAYL 369
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102
V GLEPD ++ +I + + +T ++D + KD ++ + PD +TY LL
Sbjct: 151 VNNGLEPDQVTTDIAVRSLCETGRVD-------EAKDLMKELTEKHSPPDTYTYNFLLKH 203
Query: 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162
KDL + E V EM+ ++ D +FT ++D + S +++ +Y + G
Sbjct: 204 LCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLR-EAMYLVSKLG----- 257
Query: 163 VCSNPGLWPKPHLYVSMM 180
N G P LY ++M
Sbjct: 258 ---NAGFKPDCFLYNTIM 272
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+ I N +I +A R++EA L++ V+ G EPD+ +Y L++ C K + L +
Sbjct: 299 DQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGA-LSL 357
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+++ G C+ P+ TY TLL G A+ + +E+ +EM + L+ + +
Sbjct: 358 LEEMEARG--CA-----PNDCTYNTLLHGLCKARLMDKGMEL-YEMMKSSGVKLESNGYA 409
Query: 134 AMVDALLYSGSI 145
+V +L+ SG +
Sbjct: 410 TLVRSLVKSGKV 421
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 40/188 (21%)
Query: 29 EAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG------ 81
E R+DEA ++ E EK PD+ +YN L+ K K L V F ++++D+
Sbjct: 171 ETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDL 230
Query: 82 -----------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K + GF PD F Y T++ GF + + +
Sbjct: 231 VSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKK 290
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178
MK + D+ T+ ++ L +G ++ +Y + + G P Y S
Sbjct: 291 MKE-EGVEPDQITYNTLIFGLSKAGRVEEARMYL---------KTMVDAGYEPDTATYTS 340
Query: 179 MMHELAAR 186
+M+ + +
Sbjct: 341 LMNGMCRK 348
>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hederifolia]
Length = 431
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + R+D A +I + + + L PD ++YN LI K L
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDL------- 298
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q D + S G PD FTY TL+ G DL + E M N+ LD +TA
Sbjct: 299 KQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQ-ENIRLDDVAYTA 357
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
++ L G + E + R + GL P Y +++E + D
Sbjct: 358 LISGLCQEGR---------SVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGD 402
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
++++N + + S+ +D+A ++ E + KGL P+ +++ LI K ++D+ M +
Sbjct: 216 SVLINGLCKESK----MDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
Q+ S PD+ TY TL+ G DL+ +++ EM S L D+ T+ +
Sbjct: 272 QM-------LSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEM-SMKGLKPDKFTYXTL 323
Query: 136 VDALLYSGSI 145
+D G +
Sbjct: 324 IDGCCKEGDL 333
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 33 IDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
I A + +++ K GL P +SYN L++ I+ L NE + +S G P
Sbjct: 158 IRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL------NEGFRLKSAMLAS-GVQP 210
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D++TY+ L+ G + E+ EM LI + TFT ++D +G + +
Sbjct: 211 DVYTYSVLINGLCKESKMDDANELFDEM-LVKGLIPNGVTFTTLIDGHCKNGRVDLA--- 266
Query: 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
EI K++ S L P Y ++++ L + D
Sbjct: 267 -----MEIYKQMLSQC-LLPDLITYNTLIYGLXKKGD 297
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 22/191 (11%)
Query: 13 WKL--NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISA-CIKTKKLD 68
W L + + N ++ ++E +++ + + G++PD +Y++LI+ C ++K D
Sbjct: 171 WGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDD 230
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
F+E L G P+ T+ TL+ G + +EI +M S C L+ D
Sbjct: 231 ANELFDEMLVK--------GLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQC-LLPD 281
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
T+ ++ L G +K A + E+ S GL P Y +++ D
Sbjct: 282 LITYNTLIYGLXKKGDLK----QAHDLIDEM-----SMKGLKPDKFTYXTLIDGCCKEGD 332
Query: 189 YDIVKSPYRRM 199
D +RM
Sbjct: 333 LDTAFEHRKRM 343
>gi|302762392|ref|XP_002964618.1| hypothetical protein SELMODRAFT_61490 [Selaginella moellendorffii]
gi|300168347|gb|EFJ34951.1| hypothetical protein SELMODRAFT_61490 [Selaginella moellendorffii]
Length = 523
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I NA++ A A R++EA +L + +E G+EPD L+Y +I A +K+++ M
Sbjct: 433 DVIACNALVGAFCSAARVEEACNLLRAMLEHGIEPDDLTYTQVIGALCASKRMEAAMLLF 492
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
E +K P + TY L++G LQ
Sbjct: 493 EYMK-------VANHTPKLTTYKELMLGLYVNGSLQ 521
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
+ V++A RID A +LE++E+ PD+++Y +I + +LD + ++K
Sbjct: 180 HCVVDAITSFGRIDHATAVLEAMEQSDCCMPDTVTYTRMIDGFCRRGELDKALVIYSRMK 239
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
D+ PD+ T+ L+ GF A + I+ + L D T+++++D
Sbjct: 240 DSESS-------PDVVTFGCLINGFCKALKFDEAI-IILKASLDAGLEPDEITYSSIIDP 291
Query: 139 L 139
L
Sbjct: 292 L 292
>gi|145335386|ref|NP_172560.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242678|sp|Q0WVV0.1|PPR31_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g10910, chloroplastic; Flags: Precursor
gi|110741600|dbj|BAE98748.1| membrane-associated salt-inducible protein isolog [Arabidopsis
thaliana]
gi|332190541|gb|AEE28662.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 664
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 31/163 (19%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTK---- 65
E K+N + N+++ + ++D ++ + +++ GL+PD ++YN L++ CIK K
Sbjct: 160 ESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYP 219
Query: 66 ---KLDVTMPFN----------------------EQLKDNGQKCSSGGFHPDIFTYATLL 100
+L +P N E+ ++ Q+ G P+I+ Y++LL
Sbjct: 220 KAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLL 279
Query: 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
+ D + E++ EMKS L+ ++ T ++ + G
Sbjct: 280 NSYSWKGDYKKADELMTEMKS-IGLVPNKVMMTTLLKVYIKGG 321
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
NEI + + +TI +A+I A + +R D A+++ + + E GL P Y +++ K
Sbjct: 218 NEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFK 277
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K++ + E++K G+ C+ P +FTY L+ G + + F M
Sbjct: 278 LNKVEAALRLVEEMK--GKGCA-----PTVFTYTELIKGLGKVGRVDDAYSLFFNM 326
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NT+++ + E E +I E Y + S E PD+++Y+ LISA K ++ D +
Sbjct: 198 NTLILMLMHEGHHE--KIHELYNEICS-EGNCSPDTITYSALISAFGKLERYDFAFRLFD 254
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
++K+N G HP Y T+L + +++ L +V EM K C + T+T
Sbjct: 255 EMKEN-------GLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVF---TYT 304
Query: 134 AMVDALLYSGSI 145
++ L G +
Sbjct: 305 ELIKGLGKVGRV 316
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 16 NTIVMNAVIEASREAQR-IDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
N + N VI+A E++ EA E ++ G+ P S +Y ILI KT +++ +
Sbjct: 369 NVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLL 428
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++ + GF P Y +L+ AK ++ E+ E+K C R +
Sbjct: 429 LEEMDEK-------GFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSAR-VYA 480
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
M+ G + A+ +F E+ K CS P + Y ++M
Sbjct: 481 VMIKHFGNCGRLSD----AVDLFCEMKKLGCS-----PDVYTYNALM 518
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISA 60
FE E ++R+ +KL+ N +++A +A +D+AYQ+ E + +K PD+ +Y ILI
Sbjct: 206 FEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRM 265
Query: 61 CIKTKKLDVTMPFNEQLKDNG----------------------------QKCSSGGFHPD 92
KT + + F +++ G K P+
Sbjct: 266 SGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPN 325
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
FTY+ L L L E++ C+ L++S ++ +V +L SG
Sbjct: 326 QFTYSLTLDILATEGQLHRLNEVL----DICDRYLNKSIYSYLVKSLCKSG 372
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I + +D+A + E +E +PD ++YN LI+ K LD +++++
Sbjct: 467 NIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQE 526
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVD 137
G + PD+FTY+TL+ F + + + EM + C I+ T+ ++D
Sbjct: 527 KG-------YDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIV---TYNILLD 576
Query: 138 ALLYSG 143
L G
Sbjct: 577 CLERRG 582
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE E + K + I N +I + +DEA+ + + + EKG +PD +Y+ LI
Sbjct: 485 LFEEMEASS---CKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIE 541
Query: 60 ACIKTKKLDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLL 100
K+ K+D+ F+E + + G P+I TY LL
Sbjct: 542 CFGKSNKVDMACSLFDEMIAE--------GCIPNIVTYNILL 575
>gi|302815687|ref|XP_002989524.1| hypothetical protein SELMODRAFT_41495 [Selaginella moellendorffii]
gi|300142702|gb|EFJ09400.1| hypothetical protein SELMODRAFT_41495 [Selaginella moellendorffii]
Length = 523
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I NA++ A A R++EA +L + +E G+EPD L+Y +I A +K+++ M
Sbjct: 433 DVIACNALVGAFCSAARVEEACNLLRAMLEHGIEPDDLTYTQVIGALCASKRMEAAMLLF 492
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
E +K P + TY L++G LQ
Sbjct: 493 EYMK-------VANHTPKLTTYKELMLGLYVNGSLQ 521
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
+ V++A RID A +LE++E+ +PD+++Y +I + +LD + ++K
Sbjct: 180 HCVVDAITSFGRIDHATAVLEAMEQSDCCKPDTVTYTRMIDGFCRRGELDKALVIYSRMK 239
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
++ PD+ T+ L+ GF A + I+ + L D T+++++D
Sbjct: 240 NSESS-------PDVVTFGCLINGFCKALKFDEAI-IILKASLDAGLEPDEITYSSIIDP 291
Query: 139 L 139
L
Sbjct: 292 L 292
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 35/170 (20%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPF 73
++T++ N V A + ++I + + E +++ G PD+ +YNILIS+ + K+D +
Sbjct: 451 VDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKI 510
Query: 74 NEQLKDNGQK---CS-------------------------SGGFHPDIFTYATLLMGFRH 105
E+L+D+ K CS G +PD+ TY+TL+ F
Sbjct: 511 FEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGK 570
Query: 106 AKDLQSLLEIVFEM--KSCCNLILDRSTFTAMVDALLYSG-SIKVVGLYA 152
++ + EM + C I+ T+ ++D L SG + + V LYA
Sbjct: 571 TDKVEMACRLFDEMLAEGCYPNIV---TYNILLDCLERSGRTAEAVDLYA 617
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+ N +++A + +D AY++ E ++ K EPD +Y I+I K K D ++
Sbjct: 244 LDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLEL 303
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
E++ + G+ P++ Y T++ +A+ + + + +M K C
Sbjct: 304 FEEMLNK-------GYSPNVIAYNTMIQALANARMVDKAILLFLKMVEKEC 347
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 16 NTIVMNAVIEASREAQ-RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
N + N VI+A E++ R EA+ E + E G+ P S +Y+ILI KT +++ +
Sbjct: 369 NVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLL 428
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E++ + GF P Y +L+ AK ++ E+ E++ C R +
Sbjct: 429 LEEMDEK-------GFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSAR-VYA 480
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181
M+ L G + A+ +F E+ K C NP ++ L M+
Sbjct: 481 VMIKHLGKCGRLS----EAVDLFNEMKKLGC-NPDVYAYNALMSGMVR 523
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108
PD+++Y+ LI+A K + D + +++K+N G HP Y T+L +
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKEN-------GLHPTAKIYTTILGIYFKLGR 280
Query: 109 LQSLLEIVFEMK-SCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164
++ L +V EMK C L + T+T ++ + +G ++ A IF ++K C
Sbjct: 281 VEKALGLVQEMKEKGCALTV--YTYTELIKGVGKAGKVE----EAYSIFMNMLKEGC 331
>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
N+I + +++ R EA ++ E + ++G+ PD + +N++I+ ++ +++
Sbjct: 232 NSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMI 291
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ +K NG C +P+++ Y+ L+ GF +Q ++ E+K L LD +T
Sbjct: 292 LDFMKKNG--C-----NPNVYNYSALMNGFCKEGKIQEAKQVFDEVKK-TGLKLDTVGYT 343
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169
+++ L +G I A+ + GE+ C L
Sbjct: 344 TLMNCLCRNGEID----EAMKLLGEMKASRCRADAL 375
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIK 63
NEI + + +TI +A+I A + +R D A+++ + + E GL P Y +++ K
Sbjct: 218 NEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFK 277
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K++ + E++K G+ C+ P +FTY L+ G + + F M
Sbjct: 278 LNKVEAALRLVEEMK--GKGCA-----PTVFTYTELIKGLGKVGRVDDAYSLFFNM 326
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
NT+++ + E E +I E Y + S E PD+++Y+ LISA K ++ D +
Sbjct: 198 NTLILMLMHEGHHE--KIHELYNEICS-EGNCSPDTITYSALISAFGKLERYDFAFRLFD 254
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
++K+N G HP Y T+L + +++ L +V EM K C + T+T
Sbjct: 255 EMKEN-------GLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVF---TYT 304
Query: 134 AMVDALLYSGSI 145
++ L G +
Sbjct: 305 ELIKGLGKVGRV 316
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 16 NTIVMNAVIEASREAQR-IDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
N + N VI+A E++ EA E ++ G+ P S +Y ILI KT +++ +
Sbjct: 369 NVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLL 428
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
E++ + GF P Y +L+ AK ++ E+ E+K C
Sbjct: 429 LEEMDEK-------GFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENC 471
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT V N +I+ + EA +++ + K GL PD +Y I+AC K +
Sbjct: 703 NTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDM------- 755
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ + Q+ + G P++ TY TL+ G+ A + L EMK D++ +
Sbjct: 756 QKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMK-LAGFKPDKAVYHC 814
Query: 135 MVDALL----YSGSIKVVGLYALC 154
+V +LL ++ S GL ++C
Sbjct: 815 LVTSLLSRATFAQSYVYSGLLSVC 838
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 38/164 (23%)
Query: 36 AYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E K GL+PD + YN +I+A +D + Q++ + P
Sbjct: 513 AFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHR-------PTTR 565
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154
T+ ++ GF A +++ LEI D + SG I V Y
Sbjct: 566 TFLPIIHGFARAGEMRRALEI--------------------FDMMRRSGCIPTVHTYNAL 605
Query: 155 IFGEIVKRVCSN----------PGLWPKPHLYVSMMHELAARVD 188
I G + KR + G+ P H Y ++M A+ D
Sbjct: 606 ILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGD 649
>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12300, mitochondrial-like [Glycine max]
Length = 450
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N + N +I+A + Q + EAY + E KG+ + +SYNI+I K+K +D +
Sbjct: 207 KPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALN 266
Query: 73 -FNEQLKDN------------GQKCSSG---------------GFHPDIFTYATLLMGFR 104
F E + N C SG G D+ TY +L+ G
Sbjct: 267 LFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLC 326
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
L + + +MK + DR TFT ++D L G +K
Sbjct: 327 KNGHLDRAIALFNKMK---DXRFDRLTFTILLDGLCKGGRLK 365
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,731,576,092
Number of Sequences: 23463169
Number of extensions: 148355521
Number of successful extensions: 377844
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 3722
Number of HSP's that attempted gapping in prelim test: 355943
Number of HSP's gapped (non-prelim): 17918
length of query: 246
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 107
effective length of database: 9,097,814,876
effective search space: 973466191732
effective search space used: 973466191732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)