BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043380
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYD6|PP374_ARATH Pentatricopeptide repeat-containing protein At5g10690
OS=Arabidopsis thaliana GN=CBSPPR1 PE=2 SV=1
Length = 580
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 152/242 (62%), Gaps = 5/242 (2%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
+I+ +H + ++ N +++ ++ A +L E + LEPD L+YN LI ACIK
Sbjct: 179 DILLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIKC 238
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
LD M F +K+ ++ PD+ TY TL+ GF A DL SL EI EMK C N
Sbjct: 239 GDLDAAMKFFNDMKEKAEEYYDDFLQPDVVTYTTLVKGFGDATDLLSLQEIFLEMKLCEN 298
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
+ +DR+ FTA+VDA+L GS ALC+FGEI+KR +N L PKPHLY+SMM A
Sbjct: 299 VFIDRTAFTAVVDAMLKCGSTS----GALCVFGEILKRSGANEVLRPKPHLYLSMMRAFA 354
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244
+ DY +V++ Y R+WPDS+G+IS VQ+EA +LLMEAALNDGQ+D AL L + + RWK
Sbjct: 355 VQGDYGMVRNLYLRLWPDSSGSISKAVQQEADNLLMEAALNDGQLDEALGILLSIVRRWK 414
Query: 245 GI 246
I
Sbjct: 415 TI 416
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 54/190 (28%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEAS--------------------------------- 27
I EE E + + +LNTIVMN+V+EA
Sbjct: 61 IVEEVEAAKKRYGRLNTIVMNSVLEACVHCGNIDLALRMFHEMAEPGGIGVDSISYATIL 120
Query: 28 ---REAQRIDEAYQILESVEKGLEP------DSLSYNI---LISACIKTKKLDVTMPFNE 75
+A+RIDEA+Q+LE++E G SL Y + LI+A + + ++
Sbjct: 121 KGLGKARRIDEAFQMLETIEYGTAAGTPKLSSSLIYGLLDALINAGDLRRANGLLARYDI 180
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
L D+G P + Y L+ G+ +++ Q+ + ++ EM L DR T+ +
Sbjct: 181 LLLDHGT--------PSVLIYNLLMKGYVNSESPQAAINLLDEMLR-LRLEPDRLTYNTL 231
Query: 136 VDALLYSGSI 145
+ A + G +
Sbjct: 232 IHACIKCGDL 241
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 42/228 (18%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILIS 59
+FEE + + + + NA+++ ++ R EA ++L E V G P ++YN LIS
Sbjct: 301 VFEEMKAAG---FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A + LD M Q+ + G K PD+FTY TLL GF A ++S + I EM
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTK-------PDVFTYTTLLSGFERAGKVESAMSIFEEM 410
Query: 120 KSC------------CNLILDRSTFTAMVDALLYSGSIKVVGLYA--------LCIFGEI 159
++ + +R FT M+ I V GL L +FG+
Sbjct: 411 RNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF---DEINVCGLSPDIVTWNTLLAVFGQN 467
Query: 160 --------VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
V + G P+ + +++ + ++ + YRRM
Sbjct: 468 GMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKK 66
+ + + L+ ++I A + R EA + + +E+ G +P ++YN++++ K
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGK--- 255
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+ P+N ++ +K S G PD +TY TL+ + Q ++ EMK+
Sbjct: 256 --MGTPWN-KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA-AGFS 311
Query: 127 LDRSTFTAMVD 137
D+ T+ A++D
Sbjct: 312 YDKVTYNALLD 322
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 41 ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E + KG++PD +SYN +I A C T+ D + F+E + G PD+ TY T
Sbjct: 689 EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM--------RNSGIVPDVITYNTF 740
Query: 100 LMGFRHAKDLQSLLEIV-FEMKSCCNLILDRSTFTAMVDA 138
+ + + + +V + +K C +++T+ ++VD
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCR--PNQNTYNSIVDG 778
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP 72
K N I A +I+EAY+IL+ ++ +G PD ++Y +LI A +KLD
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKE 314
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E++K +G PD TY TLL F +DL S+ + EM+ + + D TF
Sbjct: 315 VFEKMK-------TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH-VPDVVTF 366
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKR--VCSNPGLWPKPHLYVSMM 180
T +VDAL +G+ FGE V + G+ P H Y +++
Sbjct: 367 TILVDALCKAGN-----------FGEAFDTLDVMRDQGILPNLHTYNTLI 405
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I +A D A + + V++G+ PD +Y++L+ ++D + +
Sbjct: 925 NCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYF 984
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++LK++G +PD+ Y ++ G + L+ L + EMK+ + D T+ +
Sbjct: 985 KELKESG-------LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNS 1037
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L +G ++ G I+ EI + GL P + +++ + + +
Sbjct: 1038 LILNLGIAGMVEEAGK----IYNEIQR-----AGLEPNVFTFNALIRGYSLSGKPEHAYA 1088
Query: 195 PYRRMWPDSTGTISP 209
Y+ M TG SP
Sbjct: 1089 VYQTMV---TGGFSP 1100
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + N ++ + +I EA ++ E V+KG P+++++N L K ++ + +
Sbjct: 570 KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALK 629
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ D G C PD+FTY T++ G ++ + +MK
Sbjct: 630 MLFKMMDMG--CV-----PDVFTYNTIIFGLVKNGQVKEAMCFFHQMK 670
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 37 YQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96
Y + + E G ++ SYN LI +K++ F + + ++ GF P + TY
Sbjct: 174 YALRKMREFGFVLNAYSYNGLIHLLLKSR-------FCTEAMEVYRRMILEGFRPSLQTY 226
Query: 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIF 156
++L++G +D+ S++ ++ EM++ L + TFT + L +G I
Sbjct: 227 SSLMVGLGKRRDIDSVMGLLKEMET-LGLKPNVYTFTICIRVLGRAGKINEA-------- 277
Query: 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210
EI+KR+ + G P Y ++ L D K + +M TG P+
Sbjct: 278 YEILKRM-DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM---KTGRHKPD 327
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA + + +A R EA QI ++ GL PDS++YN+++ K ++D +
Sbjct: 467 NIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLL 526
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
++ +NG C PD+ +L+ A + ++ MK
Sbjct: 527 SEMMENG--C-----EPDVIVVNSLINTLYKADRVDEAWKMFMRMK 565
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTI N + + + + A ++L + ++ G PD +YN +I +K ++ M F
Sbjct: 607 NTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFF 666
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV 116
Q+K +PD T TLL G A ++ +I+
Sbjct: 667 HQMKKL--------VYPDFVTLCTLLPGVVKASLIEDAYKII 700
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 32/153 (20%)
Query: 1 IFEENEIVNR---EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGL-EPDSLSYNI 56
I E EI+ R E + + +I+A A+++D A ++ E ++ G +PD ++Y
Sbjct: 274 INEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYIT 333
Query: 57 LISACIKTKKLDVTMPFNEQLKDNGQK-------------CSSGGFH------------- 90
L+ + LD F +++ +G C +G F
Sbjct: 334 LLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQG 393
Query: 91 --PDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
P++ TY TL+ G L LE+ M+S
Sbjct: 394 ILPNLHTYNTLICGLLRVHRLDDALELFGNMES 426
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
++ +I S + + A + E K G++P +YN+LI ++ +++ Q
Sbjct: 751 ILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQ 810
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS--C-CNLILDRSTFT 133
+K S G PD+ TY LL + + + L E+ EM + C N I T
Sbjct: 811 VK-------STGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI----THN 859
Query: 134 AMVDALLYSGSI-KVVGLY-----------ALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
++ L+ +G++ + LY C +G ++ + + L+ L+ M+
Sbjct: 860 IVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGML 918
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + +++A +A EA+ L+ + ++G+ P+ +YN LI ++ +LD +
Sbjct: 362 DVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELF 421
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++ S G P +TY + + + D S LE +MK+
Sbjct: 422 GNME-------SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKT 461
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILI 58
+FE + ++ + NTI N VI +A +D+A + + ++ P + +Y LI
Sbjct: 839 LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898
Query: 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
K+ +L E + D G + P+ Y L+ GF A + + + F+
Sbjct: 899 DGLSKSGRLYEAKQLFEGMLDYGCR-------PNCAIYNILINGFGKAGEADAACAL-FK 950
Query: 119 MKSCCNLILDRSTFTAMVDALLYSGSI 145
+ D T++ +VD L G +
Sbjct: 951 RMVKEGVRPDLKTYSVLVDCLCMVGRV 977
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK 63
+E+V +H + + N +I+ + +R++E ++ E ++GL ++++Y LI +
Sbjct: 344 DEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQ 403
Query: 64 TKKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ D M F + + D G HPDI TY LL G + ++++ L +VFE
Sbjct: 404 ARDCDNAQMVFKQMVSD--------GVHPDIMTYNILLDGLCNNGNVETAL-VVFEYMQK 454
Query: 123 CNLILDRSTFTAMVDALLYSGSIK 146
++ LD T+T M++AL +G ++
Sbjct: 455 RDMKLDIVTYTTMIEALCKAGKVE 478
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 24/220 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
+ ++ N +I+ + + +D+A+ + +E KG++PD +YN LIS C + D +
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ L+ N +PD+ + L+ F L ++ EM + + F
Sbjct: 309 SDMLEKN--------INPDLVFFNALIDAFVKEGKLVEAEKLYDEM------VKSKHCFP 354
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVK 193
D + Y+ IK Y G V R S GL Y +++H D D +
Sbjct: 355 ---DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 411
Query: 194 SPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+++M D + P++ ++L++ N+G V+ AL
Sbjct: 412 MVFKQMVSDG---VHPDIMTY--NILLDGLCNNGNVETAL 446
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + + KL+ + +IEA +A ++++ + + S+ KG++P+ ++Y ++S C K
Sbjct: 450 EYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 509
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +K++G +SG TY TL+ D + E++ EM+S C
Sbjct: 510 GLKEEADALFVE-MKEDGPLPNSG-------TYNTLIRARLRDGDEAASAELIKEMRS-C 560
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
D STF +V +L+ G +
Sbjct: 561 GFAGDASTF-GLVTNMLHDGRL 581
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTM 71
K + N +I R +A ++L + +EK + PD + +N LI A +K KL +
Sbjct: 282 KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEK 341
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
++E +K + C PD+ Y TL+ GF K ++ +E+ EM S L+ + T
Sbjct: 342 LYDEMVK--SKHC-----FPDVVAYNTLIKGFCKYKRVEEGMEVFREM-SQRGLVGNTVT 393
Query: 132 FTAMVDALL 140
+T ++
Sbjct: 394 YTTLIHGFF 402
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 44/205 (21%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ +I +A+ D A + + V G+ PD ++YNIL+ ++ +
Sbjct: 390 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVF 449
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGFRHA 106
E ++ K C +G G P++ TY T++ GF
Sbjct: 450 EYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR- 508
Query: 107 KDLQSLLEIVF-EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK--RV 163
K L+ + +F EMK L + T+ ++ A L G E++K R
Sbjct: 509 KGLKEEADALFVEMKEDGPLP-NSGTYNTLIRARLRDGDEAAS--------AELIKEMRS 559
Query: 164 CSNPGLWPKPHLYVSMMHELAARVD 188
C G L +M+H+ R+D
Sbjct: 560 CGFAGDASTFGLVTNMLHD--GRLD 582
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E++ L+T+ N +I + ++DEA+ + S+ G+EPD +YN++IS C K
Sbjct: 526 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 585
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ D + F+ ++KDNG + PD TY TL+ G A ++ +E++ EM+S
Sbjct: 586 SAISDANVLFH-KMKDNGHE-------PDNSTYNTLIRGCLKAGEIDKSIELISEMRS 635
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 27/225 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N +I+ A+R+DE Q+L + +GL ++ +YN LI + L+
Sbjct: 431 DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAA---- 486
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+D Q+ S G PD T LL GF + L+ LE+ FE+ + LD +
Sbjct: 487 ---QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALEL-FEVIQMSKIDLDTVAYNI 542
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--GLWPKPHLYVSMMHELAARVDYDIV 192
++ + + E CS P G+ P Y M+ +
Sbjct: 543 IIHGMCKGSKVD-----------EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591
Query: 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237
+ +M + E + L+ L G++D +++ +S
Sbjct: 592 NVLFHKMKDN-----GHEPDNSTYNTLIRGCLKAGEIDKSIELIS 631
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 41 ESVEKGLEPDSLSYNILISA-CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
+ VE GL P +++N LI+ C++ + L+ N+ + G H D+ TY T+
Sbjct: 216 QMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV--------GKGLHIDVVTYGTI 267
Query: 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
+ G D +S L ++ +M+ ++ D ++A++D L G
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEE-THIKPDVVIYSAIIDRLCKDG 310
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I+ R +A ++L + +E+ + PD L++N LISA +K KL
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGF 103
+++ +C PD TY +++ GF
Sbjct: 390 DEML---HRC----IFPDTVTYNSMIYGF 411
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 12 HWKLNTIVMNAVIEA-SREAQRIDEAYQILESVEKGLEPDSLSYNILISA-CIKTKKLDV 69
H K + ++ +A+I+ ++ D Y E +EKG+ P+ +YN +I C + D
Sbjct: 291 HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDA 350
Query: 70 TMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129
+ ++ +PD+ T+ L+ L FE + C+ +L R
Sbjct: 351 QRLLRDMIERE--------INPDVLTFNALISASVKEGKL-------FEAEKLCDEMLHR 395
Query: 130 STF--TAMVDALLYS 142
F T ++++Y
Sbjct: 396 CIFPDTVTYNSMIYG 410
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIK 63
NE++ R +TI N++I+ + + EA Q+ + V KG EPD ++Y+ILI++ K
Sbjct: 339 NEMITR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 397
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++D M ++ SS G P+ TY TL++GF + L + E+ EM S
Sbjct: 398 AKRVDDGMRLFREI-------SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 448
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
IFE+ + + L + N +I A ++D+A+ + S+ +KG++PD ++YN++I
Sbjct: 477 IFEK---MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIG 533
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
K L ++K++G C+ PD FTY L+ L S +E++ EM
Sbjct: 534 GLCKKGSLSEADMLFRKMKEDG--CT-----PDDFTYNILIRAHLGGSGLISSVELIEEM 586
Query: 120 KSCCNLILDRSTFTAMVDAL 139
K C D ST ++D L
Sbjct: 587 K-VCGFSADSSTIKMVIDML 605
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + +I + +A+R+D+ ++ + KGL P++++YN L+ ++ KL+
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA---- 439
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
K+ Q+ S G P + TY LL G +L LEI +M+
Sbjct: 440 ---KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ 482
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
+ + +A+I+ + ++ EA ++ E + +G+ PD+++YN LI K L + F
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 373
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+ + S G PDI TY+ L+ + AK + + + E+ S LI + T+
Sbjct: 374 DLMV--------SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS-KGLIPNTITYN 424
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKR 162
+V SG + A +F E+V R
Sbjct: 425 TLVLGFCQSGKLNA----AKELFQEMVSR 449
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP-FNE-Q 76
V+N + ++ A +D ++ +E E+ ++ + Y+I+I + K D + FNE +
Sbjct: 216 VLNRLCKSGNSALALD-LFRKME--ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K G D+ TY++L+ G + +++ EM N+I D TF+A++
Sbjct: 273 MK---------GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR-NIIPDVVTFSALI 322
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
D + G + L A ++ E++ R G+ P Y S++
Sbjct: 323 DVFVKEGKL----LEAKELYNEMITR-----GIAPDTITYNSLI 357
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV--EKGLEPDSLSYNILISACIKTK 65
+N +++ N ++ N +I + + +A ++L+++ EK SYN +I +K
Sbjct: 545 MNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVG 604
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
D + ++ +NG+ P++ T+ +L+ GF + + LE+ EMKS L
Sbjct: 605 DTDSAVETYREMSENGKS-------PNVVTFTSLINGFCKSNRMDLALEMTHEMKS-MEL 656
Query: 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185
LD + A++D +K A +F E+ + GL P +Y S++
Sbjct: 657 KLDLPAYGALIDGFCKKNDMKT----AYTLFSELPEL-----GLMPNVSVYNSLISGFRN 707
Query: 186 RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
D Y++M D IS ++ +++ L DG ++LA D
Sbjct: 708 LGKMDAAIDLYKKMVNDG---ISCDLFTYT--TMIDGLLKDGNINLASD 751
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)
Query: 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69
E W + + N + + ++D A L+ +E KG+EP+ + YN ++ A + K +D+
Sbjct: 443 ESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDL 502
Query: 70 TMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
F+E L+ G P+ FTY+ L+ GF KD Q+ +++ +M + N +
Sbjct: 503 ARSIFSEMLEK--------GLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNA-SNFEAN 553
Query: 129 RSTFTAMVDALLYSG 143
+ +++ L G
Sbjct: 554 EVIYNTIINGLCKVG 568
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 20 MNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
+N V+ + + IDEA +I V G+ D+++ +L+ A ++ +K E+
Sbjct: 207 VNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERK-------PEEAV 259
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
++ S G PD ++ + DL L+++ EM+ + + T+T+++ A
Sbjct: 260 KIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVA 319
Query: 139 LLYSGSIK 146
+ G+++
Sbjct: 320 FVKEGNME 327
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 41 ESVEKGLEPDSLSYNILISAC-IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99
E +G++PD ++YN L+SAC I+ + M F + + GG PD+ TY+ L
Sbjct: 237 EMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVF--------RTMNDGGIVPDLTTYSHL 288
Query: 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159
+ F + L+ + +++ EM S +L D +++ +++A SGSIK A+ +F ++
Sbjct: 289 VETFGKLRRLEKVCDLLGEMASGGSLP-DITSYNVLLEAYAKSGSIK----EAMGVFHQM 343
Query: 160 VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW-----PD-STGTISPEVQE 213
C+ P + Y +++ YD V+ + M PD +T I EV
Sbjct: 344 QAAGCT-----PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398
Query: 214 EAGHL 218
E G+
Sbjct: 399 EGGYF 403
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 46/265 (17%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + A+I+ +A+R+ EA ++ ++ G+ P+ SYN LI +K K +D +
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 495
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+LK G K PD+ Y T + G + +++ ++ EMK C + + +T
Sbjct: 496 NELKGRGIK-------PDLLLYGTFIWGLCSLEKIEAAKVVMNEMKE-CGIKANSLIYTT 547
Query: 135 MVDALLYSGSIKVVGLYAL------------CIFGEIVKRVCSNP--------------- 167
++DA SG+ GL+ L F ++ +C N
Sbjct: 548 LMDAYFKSGN-PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISND 606
Query: 168 -GLWPKPHLYVSMMHELAARVDYDIVKSPYRRM-----WPDSTGTIS-PEVQEEAGHLLM 220
GL ++ +M+ L + + + +M PD T S + + G++L
Sbjct: 607 FGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLE 666
Query: 221 EAALND--GQVDLALDKLSNTITRW 243
AL D ++ + LD L+ T W
Sbjct: 667 ALALRDKMAEIGMKLDLLAYTSLVW 691
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +I+ + ++ A + E ++ +GL PD+++YN +I K +LD T+ F E++KD
Sbjct: 266 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKD 325
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
C PD+ TY L+ F L LE EMK L + +++ +VDA
Sbjct: 326 ---MCC----EPDVITYNALINCFCKFGKLPIGLEFYREMKG-NGLKPNVVSYSTLVDAF 377
Query: 140 LYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
G + + + Y ++RV GL P + Y S++
Sbjct: 378 CKEGMMQQAIKFYV------DMRRV----GLVPNEYTYTSLI 409
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIK 63
N I N + N + A+I+ + +++ A + E V+KGL PD +Y L+ K
Sbjct: 601 NRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFK 660
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+ + +++ + G K D+ Y +L+ G H LQ + EM
Sbjct: 661 QGNVLEALALRDKMAEIGMKL-------DLLAYTSLVWGLSHCNQLQKARSFLEEM 709
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++I+A+ + + +A+++ E ++ G+E + ++Y LI +++
Sbjct: 401 NEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERM------- 453
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
++ ++ K + G P++ +Y L+ GF AK++ LE++ E+K
Sbjct: 454 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKG 500
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+K + I + +I A+ I +A+ E +E G+EP+ ++YNILI +C T D ++
Sbjct: 491 FKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSV 550
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILD 128
++K+N G PD++ Y + F R K + LL+ + + L D
Sbjct: 551 KLFAKMKEN-------GLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRI----GLKPD 599
Query: 129 RSTFTAMVDALLYSG 143
T++ ++ AL SG
Sbjct: 600 NFTYSTLIKALSESG 614
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G++P + YN +I A +K+ LD+ +Q++ +G K PD FTY L+ G
Sbjct: 175 GMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCK-------PDRFTYNILIHGVCK 227
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
+ + +V +M+ N + T+T ++D L +G +
Sbjct: 228 KGVVDEAIRLVKQMEQEGNRP-NVFTYTILIDGFLIAGRV 266
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 21 NAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NAVI+ +A+RI+ A L E ++G+ P+ +++N +S + + DV +++
Sbjct: 429 NAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSG--YSVRGDV-----KKVHG 481
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+K GF PD+ T++ ++ AK+++ + EM
Sbjct: 482 VLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEM 521
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 23 VIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81
+++A AQR E + L+ + GL SYN +I K ++++ F +++D
Sbjct: 396 LVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDR- 454
Query: 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141
G P++ T+ T L G+ D++ + V E D TF+ +++ L
Sbjct: 455 ------GISPNLVTFNTFLSGYSVRGDVKK-VHGVLEKLLVHGFKPDVITFSLIINCLCR 507
Query: 142 SGSIK 146
+ IK
Sbjct: 508 AKEIK 512
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 21/197 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I+ + R +A ++L+ + E+G+ PD YN LI K K++D F
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ +NG K P+ FTY + G+ A + S + V EM+ C ++ ++ T
Sbjct: 511 VEMVENGLK-------PNAFTYGAFISGYIEASEFASADKYVKEMRE-CGVLPNKVLCTG 562
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
+++ G + + A + +V + G+ Y +M+ L D +
Sbjct: 563 LINEYCKKGKV----IEACSAYRSMV-----DQGILGDAKTYTVLMNGLFKNDKVDDAEE 613
Query: 195 PYRRMWPDSTGTISPEV 211
+R M I+P+V
Sbjct: 614 IFREMRGKG---IAPDV 627
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 38/173 (21%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD-VTM 71
K T++MN + + ++D+A +I + KG+ PD SY +LI+ K + +
Sbjct: 593 KTYTVLMNGLFKN----DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 72 PFNEQLKDN------------GQKCSSG---------------GFHPDIFTYATLLMGFR 104
F+E +++ G C SG G HP+ TY T++ G+
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157
+ DL + EMK L+ D +T +VD ++ A+ IFG
Sbjct: 709 KSGDLAEAFRLFDEMK-LKGLVPDSFVYTTLVDGCCRLNDVE----RAITIFG 756
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N ++ +I + ++ EA S V++G+ D+ +Y +L++ K K+D
Sbjct: 556 NKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF 615
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++ G PD+F+Y L+ GF ++Q I EM
Sbjct: 616 REMRGKG-------IAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 35/180 (19%)
Query: 33 IDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
+D A ++ ES + KGL P +Y++LI K K+L E K + S G
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRL-------EDAKSLLVEMDSLGVSL 310
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKS-----------CCNLILDRSTF----TAMV 136
D TY+ L+ G ++ + +V EM S CC ++ + A+
Sbjct: 311 DNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALF 370
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPY 196
D ++ SG I YA +++ C + L V M +IV SPY
Sbjct: 371 DGMIASGLIPQAQAYA-----SLIEGYCREKNVRQGYELLVEMKKR-------NIVISPY 418
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 81/190 (42%), Gaps = 39/190 (20%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
+ +I+ + +R+++A +L ++ G+ D+ +Y++LI +K + D ++
Sbjct: 281 DVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVS 340
Query: 80 NG-------QKCS---------------------SGGFHPDIFTYATLLMGFRHAKDLQS 111
+G C + G P YA+L+ G+ K+++
Sbjct: 341 HGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQ 400
Query: 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171
E++ EMK N+++ T+ +V + SG + G Y IVK + ++ G P
Sbjct: 401 GYELLVEMKK-RNIVISPYTYGTVVKGMCSSGDLD--GAY------NIVKEMIAS-GCRP 450
Query: 172 KPHLYVSMMH 181
+Y +++
Sbjct: 451 NVVIYTTLIK 460
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+ ++T NA++ EA ++DEA++I E + +G D +SYN LIS C KKLD
Sbjct: 514 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 573
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
F +++ G K PD +TY+ L+ G + ++ ++ + K ++ D T
Sbjct: 574 MFLDEMVKRGLK-------PDNYTYSILICGLFNMNKVEEAIQFWDDCKR-NGMLPDVYT 625
Query: 132 FTAMVDA 138
++ M+D
Sbjct: 626 YSVMIDG 632
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACI 62
+ EI+ R ++ + N +I +++DEA+ L E V++GL+PD+ +Y+ILI
Sbjct: 541 QKEILGR-GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLF 599
Query: 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K++ + F + K N G PD++TY+ ++ G A+ + E EM S
Sbjct: 600 NMNKVEEAIQFWDDCKRN-------GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMS 651
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKL-DVTMPF 73
N + N VI+ R DEA+ E VE+G+EP ++Y+IL+ + K++ D
Sbjct: 307 NVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVL 366
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E K GF P++ Y L+ F A L +EI M S L L ST+
Sbjct: 367 KEMTKK--------GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS-KGLSLTSSTYN 417
Query: 134 AMVDALLYSG 143
++ +G
Sbjct: 418 TLIKGYCKNG 427
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+V N +I A + R+ A ++ E ++ KG+ P+S +Y LI +++
Sbjct: 657 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 716
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G P++F Y L+ G+ + + ++ EM S N+ ++ T+T
Sbjct: 717 EEMRME-------GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS-KNVHPNKITYTV 768
Query: 135 MVDALLYSGSI 145
M+ G++
Sbjct: 769 MIGGYARDGNV 779
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKK 66
+ ++ + N IV N +I++ EA +++A +I + V KGL S +YN LI K +
Sbjct: 369 MTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQ 428
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
D +++ G + G F I + LM S L V EM
Sbjct: 429 ADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM-------FDSALRFVGEM 474
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++ +++R+++AY++ ++ D+++YN++++ K+ + E LK+
Sbjct: 164 FNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKAL---EVLKE 220
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
++ G +P++ TY T+L GF A ++ E EMK + +D T+T +V
Sbjct: 221 MVER----GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK-RDCEIDVVTYTTVVHGF 275
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
+G IK A +F E+++ G+ P Y +M+ L +
Sbjct: 276 GVAGEIK----RARNVFDEMIRE-----GVLPSVATYNAMIQVLCKK 313
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 33/156 (21%)
Query: 21 NAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I+ + ++ A + E V +G EP+ +YN+LI + +++++
Sbjct: 304 NAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMEN 363
Query: 80 NG----------------------------QKCSSGGFHPDIFTYATLLMGF---RHAKD 108
G +K SG P++ TY L+ G + ++D
Sbjct: 364 EGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 423
Query: 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144
+ +++ EM I + TF +++ LL +G+
Sbjct: 424 MVVAGKLLLEMVE-RGFIPRKFTFNRVLNGLLLTGN 458
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISAC 61
+ NE++ R N + N++I +DEA ++L V KG P++++YN LI+
Sbjct: 276 QYNEMIQRS-VNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGY 334
Query: 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
K K++D M + S G D FTY TL G+ A + +++ M S
Sbjct: 335 CKAKRVDDGMKILCVM-------SRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVS 387
Query: 122 CCNLILDRSTFTAMVDALLYSGSI 145
C + D TF ++D L G I
Sbjct: 388 -CGVHPDMYTFNILLDGLCDHGKI 410
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 18 IVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
+ +++ R EA +++ V G EP+ + YN +I + + +++ + +
Sbjct: 150 VTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKH 209
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K G + PD+ TY +L+ H+ I+ +M + D TF+A++
Sbjct: 210 MKKMGIR-------PDVVTYNSLITRLFHSGTWGVSARILSDMMR-MGISPDVITFSALI 261
Query: 137 DA 138
D
Sbjct: 262 DV 263
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTI N++I+ + R++EA Q+++ + KG +PD +++NILI+ K ++D +
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ S G + TY TL+ GF + L+ ++ EM S + D ++
Sbjct: 427 REM-------SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS-RRVRPDIVSYKI 478
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVK 161
++D L +G ++ AL IFG+I K
Sbjct: 479 LLDGLCDNGELE----KALEIFGKIEK 501
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 21/133 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMP-FNEQ 76
V+N + ++ + A A ++L +E + ++ D++ Y+I+I K LD FNE
Sbjct: 234 VLNVMCKSGQTAL----AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRSTFT 133
GF DI TY TL+ GF +A D LL + + K N++ TF+
Sbjct: 290 --------EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVV----TFS 337
Query: 134 AMVDALLYSGSIK 146
++D+ + G ++
Sbjct: 338 VLIDSFVKEGKLR 350
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTK 65
+ + +L+ + +I A ++D+A+ + S+ KG++ D+ +YNI+IS C K
Sbjct: 499 IEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDS 558
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125
+ F +K + G PD TY L+ D + E++ EMKS
Sbjct: 559 LSKADILF--------RKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKS-SGF 609
Query: 126 ILDRSTFTAMVDALLYSGSI 145
D ST MV +L SG +
Sbjct: 610 PADVST-VKMVINMLSSGEL 628
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 18/177 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKK 66
+N + + + NA+I ++++A +LE + EKGL PD +SY+ ++S ++
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
+D + ++ + G K PD TY++L+ GF + + ++ EM L
Sbjct: 466 VDEALRVKREMVEKGIK-------PDTITYSSLIQGFCEQRRTKEACDLYEEMLR-VGLP 517
Query: 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
D T+TA+++A G ++ AL + E+V++ G+ P Y +++ L
Sbjct: 518 PDEFTYTALINAYCMEGDLE----KALQLHNEMVEK-----GVLPDVVTYSVLINGL 565
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 32/158 (20%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N + N +I+ + ++ID+ +++L S+ KGLEP+ +SYN++I+ C + + +V+
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL 298
Query: 74 NEQLKDNGQK-------------CSSGGFH---------------PDIFTYATLLMGFRH 105
E + G C G FH P + TY +L+
Sbjct: 299 TE-MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
A ++ +E + +M+ L + T+T +VD G
Sbjct: 358 AGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKG 394
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +++ + ++EAY++L + + G P ++YN LI+ T K++ +
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E +K+ G PD+ +Y+T+L GF + D+ L + EM
Sbjct: 439 EDMKEKG-------LSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 21 NAVIEAS-REAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
NAV++A+ R + I A + E +E + P+ +YNILI +DV + ++++
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKME 232
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGF 103
+ G P++ TY TL+ G+
Sbjct: 233 -------TKGCLPNVVTYNTLIDGY 250
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 29/142 (20%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKK 66
+NR + L+ + N +I+ + +A + E + GL P ++Y LI + K
Sbjct: 301 MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGN 360
Query: 67 LDVTMPFNEQLKDNG----------------------------QKCSSGGFHPDIFTYAT 98
++ M F +Q++ G ++ + GF P + TY
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420
Query: 99 LLMGFRHAKDLQSLLEIVFEMK 120
L+ G ++ + ++ +MK
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMK 442
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 25/206 (12%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILIS 59
+FEE + +LN ++ +++I+ + RIDEAY ILE + +KGL P+ ++N L+
Sbjct: 644 LFEE---AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLD 700
Query: 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
A +K ++++ + + +K+ KC+ P+ TY L+ G + EM
Sbjct: 701 ALVKAEEINEALVCFQSMKE--LKCT-----PNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 120 KSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179
+ + ++T M+ L +G+I G + R +N G+ P Y +M
Sbjct: 754 QK-QGMKPSTISYTTMISGLAKAGNIAEA--------GALFDRFKANGGV-PDSACYNAM 803
Query: 180 MHELA----ARVDYDIVKSPYRRMWP 201
+ L+ A + + + RR P
Sbjct: 804 IEGLSNGNRAMDAFSLFEETRRRGLP 829
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ I N ++ R+ ++DEA ++ E ++K P+ +YNILI + KLD
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAF---- 397
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTFT 133
+L+D+ QK G P++ T ++ ++ L + EM K C D TF
Sbjct: 398 ELRDSMQK---AGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVC---TPDEITFC 451
Query: 134 AMVDALLYSGSI 145
+++D L G +
Sbjct: 452 SLIDGLGKVGRV 463
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 26/186 (13%)
Query: 11 EHWKLN-----TIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
EH + N T N +I A + DEAY +LE KG P ++YN +++ K
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKM 356
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
K+D + E++K + P++ TY L+ A L + E+ M+
Sbjct: 357 GKVDEALKVFEEMKKDAA--------PNLSTYNILIDMLCRAGKLDTAFELRDSMQK-AG 407
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L + T MVD L S + A +F E+ +VC+ P + S++ L
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLD----EACAMFEEMDYKVCT-----PDEITFCSLIDGLG 458
Query: 185 --ARVD 188
RVD
Sbjct: 459 KVGRVD 464
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ ++ N I++ + ++D A++ +E GL+PD ++Y +I K +LD +
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ---SLLE 114
E L+ N + P + Y T++MG+ A SLLE
Sbjct: 297 EHLEKNRRV-------PCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T N VI+ + ++++AYQ+LE ++ KG EP ++Y +I K +LD
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
E+ K S ++ Y++L+ GF + I+ E+ L + T+
Sbjct: 645 FEEAK-------SKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQ-KGLTPNLYTWN 696
Query: 134 AMVDALLYSGSI 145
+++DAL+ + I
Sbjct: 697 SLLDALVKAEEI 708
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 29 EAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+A ++ E Y +++ + K P +Y LI A D+ + +Q+++ G
Sbjct: 145 KANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG------ 198
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
+ P + + TL+ GF + S L ++ EMKS +L D + +D+ G + +
Sbjct: 199 -YEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS-SSLDADIVLYNVCIDSFGKVGKVDM 256
Query: 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL--AARVD 188
A F EI GL P Y SM+ L A R+D
Sbjct: 257 ----AWKFFHEI-----EANGLKPDEVTYTSMIGVLCKANRLD 290
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMP 72
K + + ++I +A R+DEA ++ E +EK P + +YN +I K D
Sbjct: 270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
E+ + G P + Y +L R + L++ EMK + + ST+
Sbjct: 330 LLERQRAKGS-------IPSVIAYNCILTCLRKMGKVDEALKVFEEMKK--DAAPNLSTY 380
Query: 133 TAMVDALLYSGSI 145
++D L +G +
Sbjct: 381 NILIDMLCRAGKL 393
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+I+++ +I+A +E Y++ S+ E+G D+ +YNI+I K K++ E
Sbjct: 556 SILIHGLIKAGFA----NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLE 611
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135
++K + GF P + TY +++ G L ++FE + L+ ++++
Sbjct: 612 EMK-------TKGFEPTVVTYGSVIDGLAKIDRLDEAY-MLFEEAKSKRIELNVVIYSSL 663
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
+D G I A I E++++ GL P + + S++ L
Sbjct: 664 IDGFGKVGRID----EAYLILEELMQK-----GLTPNLYTWNSLLDAL 702
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 22/176 (12%)
Query: 16 NTIVMNAVIEASREAQRID---EAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
N ++ +I ID E+YQ + S KGL+PD + YN L++ K L
Sbjct: 344 NDVIFTTLIHGHSRNGEIDLMKESYQKMLS--KGLQPDIVLYNTLVNGFCKNGDLVAARN 401
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
+ + G + PD TY TL+ GF D+++ LEI EM + LDR F
Sbjct: 402 IVDGMIRRGLR-------PDKITYTTLIDGFCRGGDVETALEIRKEMDQ-NGIELDRVGF 453
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188
+A+V + G + I E R G+ P Y MM + D
Sbjct: 454 SALVCGMCKEGRV---------IDAERALREMLRAGIKPDDVTYTMMMDAFCKKGD 500
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 33/176 (18%)
Query: 1 IFEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILIS 59
+F+E + + + + N +I + +DE +++ +EK PD +Y+ LI+
Sbjct: 262 VFDE---ITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALIN 318
Query: 60 ACIKTKKLDVTMP-FNEQ---------------------------LKDNGQKCSSGGFHP 91
A K K+D F+E +K++ QK S G P
Sbjct: 319 ALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQP 378
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
DI Y TL+ GF DL + IV M L D+ T+T ++D G ++
Sbjct: 379 DIVLYNTLVNGFCKNGDLVAARNIVDGMIR-RGLRPDKITYTTLIDGFCRGGDVET 433
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 53/188 (28%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTM 71
+ LN V N ++ + I +A ++ + + K L+P +S+N LI+ K LD
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
Q++ + + PD+FTY
Sbjct: 296 RLKHQMEKSRTR-------PDVFTY----------------------------------- 313
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+A+++AL K+ G + L F E+ KR GL P ++ +++H + + D+
Sbjct: 314 -SALINALCKEN--KMDGAHGL--FDEMCKR-----GLIPNDVIFTTLIHGHSRNGEIDL 363
Query: 192 VKSPYRRM 199
+K Y++M
Sbjct: 364 MKESYQKM 371
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKL 67
R + + I +I+ ++ A +I + +++ G+E D + ++ L+ C + + +
Sbjct: 408 RRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVI 467
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
D E L+ G PD TY ++ F D Q+ +++ EM+S
Sbjct: 468 DAERALREMLR--------AGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQS 513
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 29/195 (14%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
K +TI MN++++A + I+ A+++ + ++PD+ ++NILI K +K D
Sbjct: 236 KTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAM 295
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK-SCCNLILDRSTF 132
+ +K F PD+ TY + + + D + + E++ EM+ + CN + T+
Sbjct: 296 MDLMK-------VTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCN--PNVVTY 346
Query: 133 TAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL-------- 183
T ++ +L S + + +G+Y E +K G P Y S++H L
Sbjct: 347 TIVMHSLGKSKQVAEALGVY------EKMKE----DGCVPDAKFYSSLIHILSKTGRFKD 396
Query: 184 AARVDYDIVKSPYRR 198
AA + D+ RR
Sbjct: 397 AAEIFEDMTNQGVRR 411
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 32 RIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD-NGQKCSSGGF 89
R +A +I E + +G+ D L YN +ISA + + ++ + ++++D G+ CS
Sbjct: 393 RFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCS---- 448
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
P++ TYA LL H K LL I+ ++ +D ST+ ++ L SG ++
Sbjct: 449 -PNVETYAPLLKMCCHKK-KMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEAC 506
Query: 150 LYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
L+ F E V++ G+ P+ ++ EL +
Sbjct: 507 LF----FEEAVRK-----GMVPRDSTCKMLVDELEKK 534
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ + NT+ N +I + A ++EA + + E G +PD ++Y LI K LD
Sbjct: 392 RDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLD 451
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NL 125
+ M D Q+ +GG PD FTY+ ++ A L + ++ EM + C NL
Sbjct: 452 IAM-------DMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNL 504
Query: 126 ILDRSTFTAMVD 137
+ T+ M+D
Sbjct: 505 V----TYNIMMD 512
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A + A+++ E V++G P+ ++YNI++ K + +
Sbjct: 468 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLY 527
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ GF PD TY+ ++ H L+ + EM+ N I D +
Sbjct: 528 RDMQN-------AGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQ-KNWIPDEPVYGL 579
Query: 135 MVDALLYSGSIK 146
+VD +G+++
Sbjct: 580 LVDLWGKAGNVE 591
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTK-KLDVTM 71
+ N N+++ +I EAY++L++ + GL P +Y +L+S C + KLD M
Sbjct: 606 RPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD--M 663
Query: 72 PFNEQL 77
F QL
Sbjct: 664 GFCGQL 669
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ + + + N +I + A ILE + + G +P+SLSYN L+ K KK+D
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 396
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLI 126
+ + E++ S G +PDI TY T+L ++ +EI+ ++ K C ++
Sbjct: 397 RAIEYLERM-------VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449
Query: 127 LDRSTFTAMVDALLYSG 143
+ T+ ++D L +G
Sbjct: 450 I---TYNTVIDGLAKAG 463
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ N ++ + +++D A + LE V +G PD ++YN +++A K K++ +
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
QL SS G P + TY T++ G A ++++ EM++ +L D T+++
Sbjct: 438 NQL-------SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA-KDLKPDTITYSS 489
Query: 135 MVDALLYSGSI 145
+V L G +
Sbjct: 490 LVGGLSREGKV 500
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I N VI+ +A + +A ++L+ + K L+PD+++Y+ L+ + K+D + F +
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE-IVFEMKSCCNLILDRSTFTAM 135
+ G P+ T+ ++++G ++ ++ +VF + C + +++T +
Sbjct: 510 FE-------RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCK--PNETSYTIL 560
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172
++ L Y G K AL E++ +C N GL K
Sbjct: 561 IEGLAYEGMAK----EAL----ELLNELC-NKGLMKK 588
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTK 65
+++R + + N ++ + ++ ++ +A ++L+ +++ PD ++Y ILI A +
Sbjct: 194 VLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDS 253
Query: 66 KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ M ++++D G C+ PD+ TY L+ G L ++ + +M S
Sbjct: 254 GVGHAMKLLDEMRDRG--CT-----PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I +IEA+ + A ++L+ + ++G PD ++YN+L++ K +LD + F
Sbjct: 238 DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLL 100
+ S G P++ T+ +L
Sbjct: 298 NDM-------PSSGCQPNVITHNIIL 316
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N I N ++ + R +A ++L + + KG P +++NILI+ + L +
Sbjct: 308 NVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDIL 367
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRSTF 132
E++ + G P+ +Y LL GF K + +E + M + C D T+
Sbjct: 368 EKMPQH-------GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC---YPDIVTY 417
Query: 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
M+ AL G ++ A+ I ++ + CS
Sbjct: 418 NTMLTALCKDGKVE----DAVEILNQLSSKGCS 446
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 33 IDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
++E ++ LE+ V G PD + LI + K E L+ +G P
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAV-------P 170
Query: 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151
D+ TY ++ G+ A ++ + L ++ M +++ T+ ++ +L SG +K
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMSVSPDVV----TYNTILRSLCDSGKLK----Q 222
Query: 152 ALCIFGEIVKRVC 164
A+ + +++R C
Sbjct: 223 AMEVLDRMLQRDC 235
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 45/239 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISA-CIKTKKLDVTMPF 73
N V N +I ++ + EA +L +E L PD +Y ILI+ CI+ + + F
Sbjct: 338 NLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLF 397
Query: 74 N---------------------------EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
EQ D + ++ G P+I T++TL+ G+ +
Sbjct: 398 QKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNV 457
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166
+D+++ + + FEM + ++ D T+TA++DA ++K AL ++ ++++
Sbjct: 458 RDIKAAMGLYFEM-TIKGIVPDVVTYTALIDAHFKEANMK----EALRLYSDMLE----- 507
Query: 167 PGLWPKPHLYVSMMH------ELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLL 219
G+ P H + ++ L+ +D+ + R W T E + G++L
Sbjct: 508 AGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYIL 566
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 37/201 (18%)
Query: 1 IFEENEIVNRE-----HWKLNTIVMNAVIEASR-EAQRIDEAYQILESVEKGLEPDSLSY 54
+FEE V+RE K ++N ++ R ++ +D YQ++ + +GL PD Y
Sbjct: 147 LFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVD--YQLM--ISRGLVPDVHIY 202
Query: 55 NILISACIK----TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
+L C K +KK E+L D + +S G P+++ Y ++ ++
Sbjct: 203 FVLFQCCFKQGLYSKK--------EKLLD---EMTSLGIKPNVYIYTIYILDLCRDNKME 251
Query: 111 SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK-VVGLYA----------LCIFGEI 159
E +FE+ ++ + T++AM+D +G+++ GLY + +FG +
Sbjct: 252 E-AEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTL 310
Query: 160 VKRVCSNPGLWPKPHLYVSMM 180
V C L L+V M+
Sbjct: 311 VDGFCKARELVTARSLFVHMV 331
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K N +++ + +IDEAY +L E GL+P+++ +N LISA K ++ +
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ G K PD++T+ +L+ G +++ L ++ +M S ++ + T+
Sbjct: 481 IFREMPRKGCK-------PDVYTFNSLISGLCEVDEIKHALWLLRDMIS-EGVVANTVTY 532
Query: 133 TAMVDALLYSGSIK 146
+++A L G IK
Sbjct: 533 NTLINAFLRRGEIK 546
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 20 MNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
N VI + RI+EA +++ + +G PD ++Y L++ K ++D ++
Sbjct: 290 FNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP 349
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138
P+I + TL+ GF L ++ +M + ++ D T+ +++
Sbjct: 350 -----------KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYG 398
Query: 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176
G +VGL AL + ++ + C KP++Y
Sbjct: 399 YWKEG---LVGL-ALEVLHDMRNKGC-------KPNVY 425
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E++ R+ N + N +I +A+R+D+ ++ E ++GL ++++Y LI +
Sbjct: 382 ELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQA 441
Query: 65 KKLD-VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
+ D M F + + S G HP+I TY LL G L + +VFE
Sbjct: 442 RDCDNAQMVFKQMV--------SVGVHPNILTYNILLDGLCKNGKLAKAM-VVFEYLQRS 492
Query: 124 NLILDRSTFTAMVDALLYSGSIKVVGLY 151
+ D T+ M++ + +G K+ G+Y
Sbjct: 493 TMEPDIYTYNIMIEGMCKAGKWKMGGIY 520
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N +++I R+ EA Q+LE + K P+ ++YN LI+ K K++D M
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELF 416
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ S G + TY TL+ GF A+D + ++VF+ + + T+
Sbjct: 417 REM-------SQRGLVGNTVTYTTLIHGFFQARDCDN-AQMVFKQMVSVGVHPNILTYNI 468
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170
++D L +G + A+ +F E ++R P ++
Sbjct: 469 LLDGLCKNGKLA----KAMVVF-EYLQRSTMEPDIY 499
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 38/179 (21%)
Query: 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------------------------- 81
P + ++ L+SA K K D+ + F E+++ G
Sbjct: 76 PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135
Query: 82 -QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
K G+ PDI T +LL GF H + + +V +M D TFT ++ L
Sbjct: 136 LGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE-MGYKPDTVTFTTLIHGLF 194
Query: 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
A+ + +V+R C P Y ++++ L R D D+ + +M
Sbjct: 195 LHNKAS----EAVALIDRMVQRGCQ-----PDLVTYGAVVNGLCKRGDTDLALNLLNKM 244
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +N+++ RI +A +++ VE G +PD++++ LI K +
Sbjct: 144 YEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAV 203
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ G C PD+ TY ++ G D L ++ +M++
Sbjct: 204 ALIDRMVQRG--C-----QPDLVTYGAVVNGLCKRGDTDLALNLLNKMEA---------- 246
Query: 132 FTAMVDA--LLYSGSIKVVGLY-----ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
A ++A ++YS I + Y AL +F E+ N G+ P Y S++ L
Sbjct: 247 --AKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM-----ENKGVRPNVITYSSLISCLC 299
Query: 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAG-HLLMEAALNDGQV 229
Y R W D++ +S ++ + +L+ +AL D V
Sbjct: 300 ----------NYGR-WSDASRLLSDMIERKINPNLVTFSALIDAFV 334
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ +A ++ E +++ ++P+ +Y+ LI+ +L
Sbjct: 322 NLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQML 381
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + + C P++ TY TL+ GF AK + +E+ EM S L+ + T+T
Sbjct: 382 ELMIR--KDC-----LPNVVTYNTLINGFCKAKRVDKGMELFREM-SQRGLVGNTVTYTT 433
Query: 135 MVDALL 140
++
Sbjct: 434 LIHGFF 439
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
R+ K NT+ N +I + A + EA + + E G EPD ++Y LI K LD
Sbjct: 387 RDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLD 446
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCC-NL 125
+ M D Q+ G PD FTY+ ++ A L + + EM + C NL
Sbjct: 447 IAM-------DMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNL 499
Query: 126 ILDRSTFTAMV 136
+ TF M+
Sbjct: 500 V----TFNIMI 506
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+T + +I +A + A+++ E V +G P+ +++NI+I+ K + + +
Sbjct: 463 DTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLY 522
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++ GF PD TY+ ++ H L+ + EM+ N + D +
Sbjct: 523 RDMQN-------AGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQR-KNWVPDEPVYGL 574
Query: 135 MVDALLYSGSI 145
+VD +G++
Sbjct: 575 LVDLWGKAGNV 585
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMP 72
+ N N+++ R+ EAY +L+S + GL P +Y +L+S C + + M
Sbjct: 601 RPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARS-NFDMG 659
Query: 73 FNEQL 77
F QL
Sbjct: 660 FCGQL 664
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ I N +I+ +A + EA +I + +E G+ +S++YN LI K+++++
Sbjct: 469 SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS-CCNLILDRSTFT 133
+Q+ GQK PD +TY +LL F D++ +IV M S C D T+
Sbjct: 529 DQMIMEGQK-------PDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE--PDIVTYG 579
Query: 134 AMVDALLYSGSIKV 147
++ L +G ++V
Sbjct: 580 TLISGLCKAGRVEV 593
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 15/109 (13%)
Query: 1 IFEENEI--VNREHWKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNIL 57
IF+E E+ V+R N++ N +I+ +++R+++A Q+++ + +G +PD +YN L
Sbjct: 492 IFDEMEVHGVSR-----NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Query: 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106
++ + + ++ D Q +S G PDI TY TL+ G A
Sbjct: 547 LTHFCRGGDI-------KKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I + +++EA ++ + KG+ PD ++N LI T+ V M
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSCCNLILDRSTF 132
E+++ S G PD FTY L+ L L ++ E+ C ++ T+
Sbjct: 424 EEMR-------SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI---TY 473
Query: 133 TAMVDAL 139
++D
Sbjct: 474 NTLIDGF 480
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 36 AYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A ++ E + KG EPD +YN+LI + KLD + +Q++ +G C+ +
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARS-----VI 471
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
TY TL+ GF A + EI EM+ + + T+ ++D L S ++
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEME-VHGVSRNSVTYNTLIDGLCKSRRVE 522
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K + N +I+A A ++ A +LE + GL PD ++ ++ I+ LD +
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
EQ+ + G CS ++ + GF ++ L + EM + D+ TF
Sbjct: 246 IREQMVEFG--CSWSNVSVNVIVH-----GFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 133 TAMVDALLYSGSIK 146
+V+ L +G +K
Sbjct: 299 NTLVNGLCKAGHVK 312
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/225 (17%), Positives = 98/225 (43%), Gaps = 28/225 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE--SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ + +N ++ + R+++A ++ S + G PD ++N L++ K + +
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSCCNLILDRST 131
+ + G + PD++TY +++ G +++ +E++ +M + C + T
Sbjct: 318 MDVMLQEG-------YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP---NTVT 367
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++ L ++ A RV ++ G+ P + S++ L ++ +
Sbjct: 368 YNTLISTLCKENQVEEATELA---------RVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418
Query: 192 VKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236
+ M S G E E ++L+++ + G++D AL+ L
Sbjct: 419 AMELFEEMR--SKGC---EPDEFTYNMLIDSLCSKGKLDEALNML 458
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105
G++PD ++N+LI A + +L + E + S G PD T+ T++ G+
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDM-------PSYGLVPDEKTFTTVMQGYIE 236
Query: 106 AKDLQSLLEIVFEM 119
DL L I +M
Sbjct: 237 EGDLDGALRIREQM 250
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I+A + + EA ++ + +++ ++PD +YN L++ +LD
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMF 388
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + S PD+ TY TL+ GF +K ++ E+ EM S L+ D T+T
Sbjct: 389 EFM-------VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM-SHRGLVGDTVTYTT 440
Query: 135 MVDALLYSG 143
++ L + G
Sbjct: 441 LIQGLFHDG 449
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA 60
E + + + KL+ + +IE +A ++D+ + + S+ KG++P+ ++YN +IS
Sbjct: 490 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 549
Query: 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120
+ L +++K++G +SG TY TL+ D + E++ EM+
Sbjct: 550 LCSKRLLQEAYALLKKMKEDGPLPNSG-------TYNTLIRAHLRDGDKAASAELIREMR 602
Query: 121 SCCNLILDRSTFTAMVDALLYSGSI 145
S C + D ST +V +L+ G +
Sbjct: 603 S-CRFVGDASTI-GLVANMLHDGRL 625
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 30/154 (19%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLK 78
N+++ R+D+A Q+ E V K PD ++YN LI K+K++ D T F E
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 428
Query: 79 -----------------------DNGQKC----SSGGFHPDIFTYATLLMGFRHAKDLQS 111
DN QK S G PDI TY+ LL G + L+
Sbjct: 429 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 488
Query: 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
LE VF+ + LD +T M++ + +G +
Sbjct: 489 ALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 521
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 39/197 (19%)
Query: 32 RIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKD----NG----- 81
++D+A + + K P + +N L+SA K KK DV + E+++ +G
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K G+ P I T ++LL G+ H K + + +V +M
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE- 183
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
D TFT ++ L A+ + +V+R C P Y +++
Sbjct: 184 MGYRPDTITFTTLIHGLFLHNKAS----EAVALVDRMVQRGCQ-----PNLVTYGVVVNG 234
Query: 183 LAARVDYDIVKSPYRRM 199
L R D D+ + +M
Sbjct: 235 LCKRGDTDLALNLLNKM 251
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 23/145 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N++I R+ +A + + KG P+ ++YN LIS K + +D M
Sbjct: 280 NNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLF 339
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
Q+ S GF+ DIFTY TL+ G+ L+ L+I C ++ R T
Sbjct: 340 -------QRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF------CWMVSRRVTPDI 386
Query: 135 MVDALLYSGSIKVVGLYALCIFGEI 159
+ +L L+ LC+ GEI
Sbjct: 387 ITHCIL---------LHGLCVNGEI 402
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 31 QRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89
RI +A+ ++ V+ G EP+ + YN LI K +L++ + +++ G
Sbjct: 155 NRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKK-------GL 207
Query: 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFE-MKSCCNLILDRSTFTAMVDALLYSGSI 145
D+ TY TLL G ++ ++ + MK N D TFTA++D + G++
Sbjct: 208 GADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN--PDVVTFTALIDVFVKQGNL 262
>sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915
OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1
Length = 463
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A + ID A ++ + ++ +P+ ++YNILI+ K++++ +LK +
Sbjct: 158 NVLLDALCKCGYIDNALELFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKS 217
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G+ P+ TY T+L + + ++ L++ EMK D + A+V AL+
Sbjct: 218 -------GYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKR-EGYTYDGYAYFAVVSALI 269
Query: 141 YSGSIK 146
+G K
Sbjct: 270 KTGRTK 275
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ + N +I I+EAY + + + G+ PD +YN LI+ + LD V F
Sbjct: 47 DVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLF 106
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L+ G +PD+++Y TL+ + + ++++ L T+
Sbjct: 107 DEMLE--------WGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYN 158
Query: 134 AMVDALLYSGSIKVVGLYALCIFGEIVKR 162
++DAL G I AL +F E+ R
Sbjct: 159 VLLDALCKCGYID----NALELFKEMQSR 183
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
L+T ++N +++ + +++++A I++ + G++PD ++YN LIS + ++
Sbjct: 11 LSTRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAV 70
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
+++D G PD+ TY +L+ G L +L + EM
Sbjct: 71 TRRMRD-------AGIRPDVATYNSLIAGAARRLMLDHVLYLFDEM 109
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +++ + +RI Q+ LE +G D +Y ++SA IKT + +
Sbjct: 222 NAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYM 281
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++L G++ DI +Y TLL + +L ++ +++ E++ + D T T
Sbjct: 282 QELVRKGRR-------HDIVSYNTLLNLYFKDGNLDAVDDLLGEIER-RGMKADEYTHTI 333
Query: 135 MVDALLYSGSIK 146
+V+ LL +G +
Sbjct: 334 IVNGLLRTGQTR 345
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKK 66
+ RE + + AV+ A + R EAY+ + E V KG D +SYN L++ K
Sbjct: 249 MKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGN 308
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126
LD +++ G K D +T+ ++ G + E M +
Sbjct: 309 LDAVDDLLGEIERRGMK-------ADEYTHTIIVNGLLRTGQTRRAEEHFVSMGE-MGIG 360
Query: 127 LDRSTFTAMVDALLYSGSI 145
L+ T +VD L +G +
Sbjct: 361 LNLVTCNCLVDGLCKAGHV 379
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N +++A + +++A + +S+ + + PD SY ++SA + ++ F +++K
Sbjct: 353 NILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKV 412
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
+G F P+I TY TL+ G+ A D++ ++E V+E + +++ T ++DA
Sbjct: 413 DG-------FEPNIVTYGTLIKGYAKANDVEKMME-VYEKMRLSGIKANQTILTTIMDA- 463
Query: 140 LYSGSIKVVG 149
SG K G
Sbjct: 464 --SGRCKNFG 471
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 28 REAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86
++A ++A ++ S V KG+ +++YN L+S +T +V+ +++ + + Q
Sbjct: 258 KKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMS--FETSYKEVSKIYDQMQRSDIQ---- 311
Query: 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
PD+ +YA L+ + A+ + L VFE + + ++DA SG ++
Sbjct: 312 ----PDVVSYALLIKAYGRARREEEALS-VFEEMLDAGVRPTHKAYNILLDAFAISGMVE 366
Query: 147 VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPD 202
A +F + +R P LW Y +M+ D + + ++R+ D
Sbjct: 367 ----QAKTVFKSM-RRDRIFPDLWS----YTTMLSAYVNASDMEGAEKFFKRIKVD 413
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 18/196 (9%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKT 64
E++ R+ K N+ + ++I ++ EA + E + +G+ PD++ Y LI K
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ F ++ S PD+ TY ++ GF D+ ++ EM C
Sbjct: 365 GDIRAASKFFYEM-------HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM-FCKG 416
Query: 125 LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
L D TFT +++ +G +K A + +++ CS P Y +++ L
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKD----AFRVHNHMIQAGCS-----PNVVTYTTLIDGLC 467
Query: 185 ARVDYDIVKSPYRRMW 200
D D MW
Sbjct: 468 KEGDLDSANELLHEMW 483
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 30/163 (18%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N N VI + RI EA+ +L +E KG PD +SY+ +++ + +LD
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 75 EQLKDNGQKCSS----------------------------GGFHPDIFTYATLLMGFRHA 106
E +K G K +S G PD Y TL+ GF
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVG 149
D+++ + +EM S ++ D T+TA++ G + G
Sbjct: 365 GDIRAASKFFYEMHS-RDITPDVLTYTAIISGFCQIGDMVEAG 406
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+++ +I +A + +A+++ ++ G P+ ++Y LI K LD N
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA---N 476
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E L + + G P+IFTY +++ G + +++ +++V E ++ L D T+T
Sbjct: 477 ELLHEMWKI----GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEA-AGLNADTVTYTT 531
Query: 135 MVDALLYSGSI 145
++DA SG +
Sbjct: 532 LMDAYCKSGEM 542
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + A+I + + EA ++ E KGLEPDS+++ LI+ K + +
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ G CS P++ TY TL+ G DL S E++ EM L + T+ +
Sbjct: 445 NHMIQAG--CS-----PNVVTYTTLIDGLCKEGDLDSANELLHEMWK-IGLQPNIFTYNS 496
Query: 135 MVDALLYSGSI----KVVG 149
+V+ L SG+I K+VG
Sbjct: 497 IVNGLCKSGNIEEAVKLVG 515
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +I+ + +D A ++L + K GL+P+ +YN +++ K+ ++
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE------ 508
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
E +K G+ + G + D TY TL+ + + ++ EI+ EM
Sbjct: 509 EAVKLVGE-FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 18/190 (9%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + N +I+ +A+R++E ++ E ++GL ++++YN LI + D+
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI- 452
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+K S G PDI TY+ LL G L+ L +VFE + D T+
Sbjct: 453 ------FKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL-VVFEYLQKSKMEPDIYTYNI 505
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
M++ + +G ++ G C S G+ P +Y +M+ + + +
Sbjct: 506 MIEGMCKAGKVE-DGWDLFCSL--------SLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 195 PYRRMWPDST 204
+R M D T
Sbjct: 557 LFREMKEDGT 566
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ EA ++ E +++ ++PD +Y+ LI+ +LD
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD------ 377
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P++ TY TL+ GF AK ++ +E+ EM S L+ + T+
Sbjct: 378 -EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYNT 435
Query: 135 MVDALLYSG 143
++ L +G
Sbjct: 436 LIQGLFQAG 444
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + + + + N +IE +A ++++ + + S+ KG++P+ + Y +IS C K
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +D G P+ TY TL+ D + E++ EM+S C
Sbjct: 549 GLKEEADALFREMKED--------GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS-C 599
Query: 124 NLILDRSTFTAMVDALLYSGSIK 146
+ D ST + MV +L+ G ++
Sbjct: 600 GFVGDASTIS-MVINMLHDGRLE 621
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N ++ A + + D + E ++ + D SYNILI+ + +L + + ++
Sbjct: 84 NKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM- 142
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G+ PDI T ++LL G+ H K + + +V +M +++ T + L
Sbjct: 143 ------KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM-----FVMEYQPNTVTFNTL 191
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
++ + A+ + +V R C P Y ++++ L R D D+ S ++M
Sbjct: 192 IHGLFLHNKASEAVALIDRMVARGCQ-----PDLFTYGTVVNGLCKRGDIDLALSLLKKM 246
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 90/203 (44%), Gaps = 29/203 (14%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +++++ +RI EA +++ + +P+++++N LI K +
Sbjct: 146 YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAV 205
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
+++ + G PD+FTY T++ G D+ L ++ +M+ + D
Sbjct: 206 ALIDRM-------VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVI 257
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+T ++DAL ++ AL +F E+ N G+ P Y S++ L
Sbjct: 258 YTTIIDALCNYKNVND----ALNLFTEM-----DNKGIRPNVVTYNSLIRCLC------- 301
Query: 192 VKSPYRRMWPDSTGTISPEVQEE 214
Y R W D++ +S ++ +
Sbjct: 302 ---NYGR-WSDASRLLSDMIERK 320
>sp|Q5BIV3|PPR35_ARATH Pentatricopeptide repeat-containing protein At1g11900
OS=Arabidopsis thaliana GN=At1g11900 PE=2 SV=1
Length = 367
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 18 IVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
IVMN +I A E ++ID+ IL+ +++ +PD ++YN ++ + ++ +
Sbjct: 178 IVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRAGLVNEILGVLST 237
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136
+K++ CS +I TY T+L G R A L I EM C + D ++TA++
Sbjct: 238 MKED---CS---VSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQ-CGIEPDLLSYTAVI 290
Query: 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY 189
D+L SG++K +L +F E+ +R + P ++Y +++ L D+
Sbjct: 291 DSLGRSGNVK----ESLRLFDEMKQR-----QIRPSVYVYRALIDCLKKSGDF 334
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N I N V+ R+A R D I E V+ G+EPD LSY +I + ++ + ++
Sbjct: 246 VNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLSYTAVIDSLGRSGNVKESLRL 305
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
+++K P ++ Y L+ + + D QS L++ E+K+ +L L
Sbjct: 306 FDEMKQR-------QIRPSVYVYRALIDCLKKSGDFQSALQLSDELKNTSSLDL 352
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 33 IDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91
ID A +L+ +EKG +E D + YN +I K K +D + ++ + G P
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG-------IRP 291
Query: 92 DIFTYATL---LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVV 148
D+FTY++L L + D LL + E K N++ TF+A++DA + G +
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV----TFSALIDAFVKEGKL--- 344
Query: 149 GLYALCIFGEIVKR 162
+ A ++ E++KR
Sbjct: 345 -VEAEKLYDEMIKR 357
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ EA ++ E +++ ++PD +Y+ LI+ +LD
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD------ 380
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P++ TY+TL+ GF AK ++ +E+ EM S L+ + T+T
Sbjct: 381 -EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYTT 438
Query: 135 MVDALL 140
++
Sbjct: 439 LIHGFF 444
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
E + R + + N +IE +A ++++ +++ ++ KG+ P+ ++YN +IS +
Sbjct: 492 EYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ +++K++G +SG TY TL+ D ++ E++ EM+S C
Sbjct: 552 GSKEEADSLLKKMKEDGPLPNSG-------TYNTLIRARLRDGDREASAELIKEMRS-CG 603
Query: 125 LILDRSTFTAMVDALLYSGSI 145
D ST +V +L+ G +
Sbjct: 604 FAGDASTI-GLVTNMLHDGRL 623
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ +I +A+ D A + + V G+ P+ L+YNIL+ K KL M
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 491
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
E L+ + + PDI+TY ++ G A ++ E+ CNL L
Sbjct: 492 EYLQRSTME-------PDIYTYNIMIEGMCKAGKVEDGWELF------CNLSL 531
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 39/197 (19%)
Query: 32 RIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
++D+A + + K P + +N L+SA K K ++ + EQ++ G
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K G+ PDI T ++LL G+ H+K + + +V +M
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE- 181
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
D TFT ++ L A+ + ++V+R C P Y ++++
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKAS----EAVALVDQMVQRGCQ-----PDLVTYGTVVNG 232
Query: 183 LAARVDYDIVKSPYRRM 199
L R D D+ S ++M
Sbjct: 233 LCKRGDIDLALSLLKKM 249
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+DEA + E + K P+ ++Y+ LI K K+++ M ++ S G
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM-------SQRGLV 430
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
+ TY TL+ GF A+D + ++VF+ + + T+ ++D L +G +
Sbjct: 431 GNTVTYTTLIHGFFQARDCDN-AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLA---- 485
Query: 151 YALCIFGEIVKRVCSNPGLW 170
A+ +F E ++R P ++
Sbjct: 486 KAMVVF-EYLQRSTMEPDIY 504
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +++++ ++RI +A +++ VE G +PD+ ++ LI K +
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131
+Q+ G C PD+ TY T++ G D+ L ++ +M+ + D
Sbjct: 209 ALVDQMVQRG--C-----QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVI 260
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191
+ ++D L + AL +F E+ N G+ P Y S++ L
Sbjct: 261 YNTIIDGLCKYKHMD----DALNLFTEM-----DNKGIRPDVFTYSSLISCLCN------ 305
Query: 192 VKSPYRRMWPDSTGTISPEVQEE 214
Y R W D++ +S ++ +
Sbjct: 306 ----YGR-WSDASRLLSDMIERK 323
>sp|Q56XR6|PP421_ARATH Pentatricopeptide repeat-containing protein At5g46680
OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2
Length = 468
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD-VTMPF 73
+ I N +I+ IDEAY + + E G+EPD +YN LIS K L+ V F
Sbjct: 47 DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLF 106
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
+E L G PD+++Y TL+ + +I+ E L+ T+
Sbjct: 107 DEMLHS--------GLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYN 158
Query: 134 AMVDALLYSG 143
++DAL SG
Sbjct: 159 ILLDALCKSG 168
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80
N +++A ++ D A ++ + ++ ++P+ ++YNILI+ K++++ +LK +
Sbjct: 158 NILLDALCKSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKS 217
Query: 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
G+ P+ TY T+L + K ++ L++ +MK D A+V AL+
Sbjct: 218 -------GYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKK-EGYTFDGFANCAVVSALI 269
Query: 141 YSG 143
+G
Sbjct: 270 KTG 272
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
++T ++N + + + + ++ A +L + + G+ PD ++YN LI + +D
Sbjct: 11 ISTKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAV 70
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++++ G PD+ TY +L+ G L +L++ EM
Sbjct: 71 TRRMRE-------AGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEM 109
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 43/193 (22%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDV----- 69
N N +++A + ++++EA+++++ +E+ G+ PD+++YN I+ C K V
Sbjct: 187 NIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNT-IATCYVQKGETVRAESE 245
Query: 70 ---TMPFNEQLKDNGQKCS--SGGF---------------------HPDIFTYATLLMGF 103
M E+ K NG+ C GG+ ++ + +L+ GF
Sbjct: 246 VVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGF 305
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
D + E++ MK CN+ D T++ +++A +G ++ A +F E+VK
Sbjct: 306 VEVMDRDGIDEVLTLMKE-CNVKADVITYSTVMNAWSSAGYME----KAAQVFKEMVK-- 358
Query: 164 CSNPGLWPKPHLY 176
G+ P H Y
Sbjct: 359 ---AGVKPDAHAY 368
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKK 66
V + KL++I NAVI A E+ +++A Q +L+ E GL P + +YN LI K
Sbjct: 106 VEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 165
Query: 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ + + + + G + P+I T+ L+ + K ++ E+V +M+ C
Sbjct: 166 PERSSELLDLMLEEG----NVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEEC 217
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 29/158 (18%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
K + I + V+ A A +++A Q+ E V+ G++PD+ +Y+IL ++ K+
Sbjct: 327 KADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEE 386
Query: 73 FNEQLKDNGQK------------CSSG---------------GFHPDIFTYATLLMGFRH 105
E L + CS+G G P+I T+ TL+ G+
Sbjct: 387 LLETLIVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLE 446
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143
K E V +M C + + STF + +A +G
Sbjct: 447 VKQPWKAEE-VLQMMRGCGVKPENSTFLLLAEAWRVAG 483
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKT 64
+ + + KL+ + +IE +A ++D+ + + S+ KG++P+ ++YN +IS
Sbjct: 419 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 478
Query: 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124
+ L +++K++G PD TY TL+ D + E++ EM+S C
Sbjct: 479 RLLQEAYALLKKMKEDGP-------LPDSGTYNTLIRAHLRDGDKAASAELIREMRS-CR 530
Query: 125 LILDRSTFTAMVDALLYSGSI 145
+ D ST +V +L+ G +
Sbjct: 531 FVGDASTI-GLVANMLHDGRL 550
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +++I R +A Q+L + +EK + P+ +++N LI A +K K
Sbjct: 219 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA---- 274
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+L D+ K S PDIFTY +L+ GF L ++ FE + D T+
Sbjct: 275 EKLHDDMIKRS---IDPDIFTYNSLINGFCMHDRLDKAKQM-FEFMVSKDCFPDLDTYNT 330
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ S ++ G + R S+ GL Y +++ L D D +
Sbjct: 331 LIKGFCKSKRVED---------GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 381
Query: 195 PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234
+++M D + P++ + +L++ N+G+++ AL+
Sbjct: 382 VFKQMVSDG---VPPDIMTYS--ILLDGLCNNGKLEKALE 416
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 30/154 (19%)
Query: 21 NAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLK 78
N++I R+D+A Q+ E V K PD +YN LI K+K++ D T F E
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Query: 79 -----------------------DNGQKC----SSGGFHPDIFTYATLLMGFRHAKDLQS 111
DN QK S G PDI TY+ LL G + L+
Sbjct: 354 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 413
Query: 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
LE VF+ + LD +T M++ + +G +
Sbjct: 414 ALE-VFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 446
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 18/180 (10%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
N ++ A + ++ D + E +++ G+ + +YNILI+ + ++ + + ++
Sbjct: 14 NKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM- 72
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
G+ P I T ++LL G+ H K + + +V +M D TFT ++ L
Sbjct: 73 ------KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPDTITFTTLIHGL 125
Query: 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199
A+ + +V+R C P Y +++ L R D D+ + +M
Sbjct: 126 FLHNKAS----EAVALVDRMVQRGCQ-----PNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ NA+I+A + R+ EA + E + + L+PD ++Y++LI +LD
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD------ 308
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E + G S G F PD+ TY+ L+ G+ +K ++ +++ EM ++ + T+T
Sbjct: 309 EAEEMFGFMVSKGCF-PDVVTYSILINGYCKSKKVEHGMKLFCEMSQ-RGVVRNTVTYTI 366
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184
++ +G + V EI +R+ G+ P Y ++H L
Sbjct: 367 LIQGYCRAGKLNVA--------EEIFRRMVF-CGVHPNIITYNVLLHGLC 407
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKL----DVT 70
N I N ++ + +I++A IL ++K G++ D ++YNI+I K ++ D+
Sbjct: 395 NIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIY 454
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
N Q G PDI+TY T+++G + K L+ + +F
Sbjct: 455 CSLNCQ-----------GLMPDIWTYTTMMLGL-YKKGLRREADALFR 490
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 49/207 (23%)
Query: 31 QRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG-------- 81
R+DEA ++ V KG PD ++Y+ILI+ K+KK++ M ++ G
Sbjct: 305 SRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364
Query: 82 -----QKCSSG---------------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
C +G G HP+I TY LL G ++ L I+ +M+
Sbjct: 365 TILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424
Query: 122 CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR---VCS--NPGLWPKPHLY 176
+DA + + +I + G +C GE+ CS GL P Y
Sbjct: 425 ------------NGMDADIVTYNIIIRG---MCKAGEVADAWDIYCSLNCQGLMPDIWTY 469
Query: 177 VSMMHELAARVDYDIVKSPYRRMWPDS 203
+MM L + + +R+M D
Sbjct: 470 TTMMLGLYKKGLRREADALFRKMKEDG 496
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 28 REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
R + D Y + V G +P+ + YN +I K+K++D + +++ +
Sbjct: 163 RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD------- 215
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
G PD+ TY +L+ G + +V M + D TF A++DA + G +
Sbjct: 216 GIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK-REIYPDVFTFNALIDACVKEGRV 272
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V NA++ + + +A ++++++ ++G PD +S+N LI+A +K+ L + +L
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV--EL 284
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137
D + G PD TY TLL +L ++ VFE D D
Sbjct: 285 LD---MVRNSGLRPDAITYNTLLSACSRDSNLDGAVK-VFE---------DMEAHRCQPD 331
Query: 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYR 197
Y+ I V G L E + G +P Y S+++ A + + VK Y+
Sbjct: 332 LWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQ 391
Query: 198 RMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233
+M G E + ++ GQ+DLAL
Sbjct: 392 QMQKMGFGK-----DEMTYNTIIHMYGKQGQLDLAL 422
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 21 NAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79
NA+I EA ++ +E KG PD+++YN L+ A + + E++K+
Sbjct: 336 NAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERN-------TEKVKE 388
Query: 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139
Q+ GF D TY T++ + L L++ +MK D T+T ++D+L
Sbjct: 389 VYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSL 448
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVT 70
++K+ + N++++ + + Q+ + + E GLEPD +YN LI + ++ +
Sbjct: 922 NFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEG 981
Query: 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130
+Q+++ G P + TY +L+ F K L+ E +FE L LDRS
Sbjct: 982 YLLMQQMRNL-------GLDPKLDTYKSLISAFGKQKCLEQ-AEQLFEELLSKGLKLDRS 1033
Query: 131 TFTAMVDALLYSGS 144
+ M+ SGS
Sbjct: 1034 FYHTMMKISRDSGS 1047
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVE--KGLEPDSLSYNILISACIKTKKLDVTMPF 73
+ + N +I + ++D A Q+ + ++ G PD+++Y +LI + K +
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133
++ D G K P + TY+ L+ G+ A + E F D ++
Sbjct: 461 MSEMLDVGIK-------PTLQTYSALICGYAKAGKREE-AEDTFSCMLRSGTKPDNLAYS 512
Query: 134 AMVDALLYSGSI-KVVGLY 151
M+D LL K GLY
Sbjct: 513 VMLDVLLRGNETRKAWGLY 531
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NTIV N +++A ++ I+E + E +KGL+P + +YNIL+ A + + D+
Sbjct: 378 NTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLL 437
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+++D G P++ +Y L+ + K + + F L ++TA
Sbjct: 438 REMEDL-------GLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTA 490
Query: 135 MVDALLYSG 143
++ A SG
Sbjct: 491 LIHAYSVSG 499
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 40/201 (19%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKL-DVTM 71
K + N +++A + D +L +E GLEP+ SY LISA +TKK+ D+
Sbjct: 411 KPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAA 470
Query: 72 PFNEQLKDNGQKCSS------------GGFH----------------PDIFTYATLLMGF 103
++K G K SS G+H P + TY ++L F
Sbjct: 471 DAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAF 530
Query: 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163
R + D L+EI +++ + R T+ ++D G L I V
Sbjct: 531 RRSGDTGKLMEI-WKLMLREKIKGTRITYNTLLDGFAKQG---------LYIEARDVVSE 580
Query: 164 CSNPGLWPKPHLYVSMMHELA 184
S GL P Y +M+ A
Sbjct: 581 FSKMGLQPSVMTYNMLMNAYA 601
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
RE K I N +++ + EA ++ K GL+P ++YN+L++A + + D
Sbjct: 548 REKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQ-D 606
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
+P + LK+ ++ PD TY+T++ F +D +
Sbjct: 607 AKLP--QLLKE----MAALNLKPDSITYSTMIYAFVRVRDFK 642
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 21 NAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKT-KKLDVTMPFNEQLK 78
NA I +QR D+A+++ E+++K + PD+++ ILI+ K + E++
Sbjct: 277 NAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMS 336
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILDRSTFTAM 135
+ G K S D+F L+ F + L I EM+ N I+ + +
Sbjct: 337 EKGVKWSQ-----DVF--GGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIV----YNTL 385
Query: 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195
+DA S I+ V +F E+ + GL P Y +M A R+ DIV++
Sbjct: 386 MDAYNKSNHIEEVE----GLFTEM-----RDKGLKPSAATYNILMDAYARRMQPDIVETL 436
Query: 196 YRRM 199
R M
Sbjct: 437 LREM 440
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + NA+I+A + ++ EA ++ E +++ ++PD+++YN+LI+ +LD
Sbjct: 327 NVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD------ 380
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P+I TY TL+ GF K ++ +E+ EM S L+ + T+T
Sbjct: 381 -EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM-SQRGLVGNTVTYTT 438
Query: 135 MVDALLYSG 143
++ +G
Sbjct: 439 IIQGFFQAG 447
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL 67
+ + +LN + N +IE +A ++ EA+ + S+ ++PD ++YN +IS + L
Sbjct: 494 LQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS--IKPDVVTYNTMISGLCSKRLL 551
Query: 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127
++K++G +SG TY TL+ D + E++ EM+S +
Sbjct: 552 QEADDLFRKMKEDGTLPNSG-------TYNTLIRANLRDCDRAASAELIKEMRS-SGFVG 603
Query: 128 DRSTFTAMVDALLYSGSI 145
D ST + +V +L+ G +
Sbjct: 604 DASTIS-LVTNMLHDGRL 620
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+TI N +I R+DEA Q+ + V K P+ +YN LI+ K K+++ +
Sbjct: 362 DTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELF 421
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
++ S G + TY T++ GF A D S ++VF+ + D T++
Sbjct: 422 REM-------SQRGLVGNTVTYTTIIQGFFQAGDCDS-AQMVFKQMVSNRVPTDIMTYSI 473
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVK 161
++ L G + AL IF + K
Sbjct: 474 LLHGLCSYGKLDT----ALVIFKYLQK 496
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 39/197 (19%)
Query: 32 RIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
++D+A + + K P + +N L+SA K K ++ + EQ++ G
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K G+ PDI T ++LL G+ H+K + + +V +M
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE- 181
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
D TFT ++ L A+ + ++V+R C P Y ++++
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKAS----EAVALVDQMVQRGCQ-----PDLVTYGTVVNG 232
Query: 183 LAARVDYDIVKSPYRRM 199
L R D D+ + +M
Sbjct: 233 LCKRGDIDLALNLLNKM 249
Score = 37.7 bits (86), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTM 71
++ + + +++++ ++RI +A +++ VE G +PD+ ++ LI K +
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD 128
+Q+ G C PD+ TY T++ G D+ L ++ +M++ N+++
Sbjct: 209 ALVDQMVQRG--C-----QPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI- 260
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183
F ++D+L ++V A+ +F E+ G+ P Y S+++ L
Sbjct: 261 ---FNTIIDSLCKYRHVEV----AVDLFTEM-----ETKGIRPNVVTYNSLINCL 303
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTMP 72
KL+T+ +I+ + ++EA ++ +E KG++P++++YN++I A K K+
Sbjct: 466 KLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARK 525
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ N G PD +TY +L+ G A ++ + + EM L + T+
Sbjct: 526 LRANMEAN-------GMDPDSYTYTSLIHGECIADNVDEAMRLFSEM-GLKGLDQNSVTY 577
Query: 133 TAMVDALLYSG-SIKVVGLY 151
T M+ L +G S + GLY
Sbjct: 578 TVMISGLSKAGKSDEAFGLY 597
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 55/195 (28%)
Query: 41 ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQK-------------CSSG 87
E EKGL P S +Y LI K ++ +++ G C G
Sbjct: 354 ELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKG 413
Query: 88 ---------------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
GF D+FT T+ F K + +F M + L ++
Sbjct: 414 MVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME-GGVKLSTVSY 472
Query: 133 TAMVDALLYSGSIKV---------------------VGLYALCIFGEI--VKRVCSN--- 166
T ++D G+++ V +YA C G+I +++ +N
Sbjct: 473 TNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEA 532
Query: 167 PGLWPKPHLYVSMMH 181
G+ P + Y S++H
Sbjct: 533 NGMDPDSYTYTSLIH 547
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 38/166 (22%)
Query: 43 VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQK-------------CSSG-- 87
V+KGL D S + + A K +++D+ + ++ D+G K C G
Sbjct: 181 VKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEV 240
Query: 88 -------------GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
G P+ +TY T++ + +D S +E V ++ ++ ++ T+T
Sbjct: 241 EKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDF-SGVEGVLKVMKKDGVVYNKVTYTL 299
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180
+++ + +G + A +F E+ +R G+ H+Y S++
Sbjct: 300 LMELSVKNGKMSD----AEKLFDEMRER-----GIESDVHVYTSLI 336
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90
R+DEA + E + K P+ ++YN LI K K++D M ++ S G
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM-------SQRGLV 428
Query: 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150
+ TY TL+ GF A++ + +IVF+ ++ D T++ ++D L +G ++
Sbjct: 429 GNTVTYTTLIHGFFQARECDN-AQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVET--- 484
Query: 151 YALCIFGEIVKRVCSNPGLW 170
AL +F E ++R P ++
Sbjct: 485 -ALVVF-EYLQRSKMEPDIY 502
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISA-CIK 63
E + R + + N +IE +A ++++ + + S+ KG++P+ ++Y ++S C K
Sbjct: 490 EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
Query: 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123
K + F E +K+ G PD TY TL+ D + E++ EM+S C
Sbjct: 550 GLKEEADALFRE-MKEEGP-------LPDSGTYNTLIRAHLRDGDKAASAELIREMRS-C 600
Query: 124 NLILDRSTFTAMVDALLYSGSI 145
+ D ST +V +L+ G +
Sbjct: 601 RFVGDASTI-GLVTNMLHDGRL 621
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
N + +A+I+A + ++ EA ++ E +++ ++PD +Y+ LI+ +LD
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD------ 378
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ K + S P++ TY TL+ GF AK + +E+ EM S L+ + T+T
Sbjct: 379 -EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM-SQRGLVGNTVTYTT 436
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA--ARVDYDIV 192
++ + C +IV + + G+ P Y ++ L +V+ +V
Sbjct: 437 LIHGFFQARE---------CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487
Query: 193 KSPY---RRMWPD 202
Y +M PD
Sbjct: 488 VFEYLQRSKMEPD 500
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ +I +A+ D A + + V G+ PD ++Y+IL+ K++ +
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVF 489
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110
E L+ + + PDI+TY ++ G A ++
Sbjct: 490 EYLQRSKME-------PDIYTYNIMIEGMCKAGKVE 518
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 42/209 (20%)
Query: 32 RIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
++D+A + + K P + ++ L+SA K K D+ + EQ+++ G
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
K G+ PDI T +LL GF H + + +V +M
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE- 179
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
D TF ++ L A+ + +V + C P Y +++
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRAS----EAVALVDRMVVKGCQ-----PDLVTYGIVVNG 230
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEV 211
L R D D+ S ++M G I P V
Sbjct: 231 LCKRGDIDLALSLLKKM---EQGKIEPGV 256
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + N++I+ + D AY++L + ++GL PD +Y +I + K+K+++
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF 520
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+ L+ G +P++ Y L+ G+ A + ++ E N + + TF A
Sbjct: 521 DSLEQK-------GVNPNVVMYTALIDGYCKAGKVDE-AHLMLEKMLSKNCLPNSLTFNA 572
Query: 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194
++ L G +K L + ++VK GL P ++H L D+D S
Sbjct: 573 LIHGLCADGKLKEATL----LEEKMVK-----IGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 195 PYRRMWPDSTGT 206
+++M S+GT
Sbjct: 624 RFQQML--SSGT 633
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 13 WKLNTIVMNAVIEASREAQRIDEAYQI-LESVEKGLEPDSLSYNILISACIKTKKLDVTM 71
+KL N ++ + +DE Q+ +E +E + P+ +YN +++ K +
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNV---- 234
Query: 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM--KSC 122
E+ K G PD FTY +L+MG+ KDL S ++ EM K C
Sbjct: 235 ---EEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGC 284
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N++ NA+I ++ EA + E + K GL+P + ILI +K D
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRF 625
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
+Q+ +G K PD TY T + + L +++ +M+
Sbjct: 626 QQMLSSGTK-------PDAHTYTTFIQTYCREGRLLDAEDMMAKMRE----------NGV 668
Query: 135 MVDALLYSGSIKVVGLYALCIFG-EIVKRVCSNPGLWPKPHLYVSMMHEL 183
D YS IK G F +++KR+ + G P H ++S++ L
Sbjct: 669 SPDLFTYSSLIKGYGDLGQTNFAFDVLKRM-RDTGCEPSQHTFLSLIKHL 717
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIK--------- 63
K N +I++ + ++A ++L + +EKGL P+ ++YN LI+ K
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414
Query: 64 ------TKKLDV-TMPFNEQLKDNGQ-----------KCSSGGFHPDIFTYATLLMGFRH 105
++KL T +NE +K + K PD+ TY +L+ G
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474
Query: 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIK 146
+ + S ++ M L+ D+ T+T+M+D+L S ++
Sbjct: 475 SGNFDSAYRLLSLMND-RGLVPDQWTYTSMIDSLCKSKRVE 514
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73
LNTI N++I++ + R+ E+ ++ E V G++P+ ++YN LI+ K+D M
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKL 533
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121
+ S G P+ TY+TL+ G+ ++ L + EM+S
Sbjct: 534 LSGM-------VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 34 DEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92
D+AY E +++G+ PD ++YN +I+A K + +D M + N G PD
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-------GVMPD 265
Query: 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYA 152
TY ++L G+ + + + + +M+S + D T++ ++D L +G + A
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRC----MEA 320
Query: 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186
IF + KR GL P+ Y +++ A +
Sbjct: 321 RKIFDSMTKR-----GLKPEITTYGTLLQGYATK 349
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
K NT+ + +I + R+++A + + +E G+ PD ++YNI++ +T++
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132
++ ++G + ++ TY +L G K L++ F+ +L L+ TF
Sbjct: 603 LYVRITESGTQI-------ELSTYNIILHGLCKNKLTDDALQM-FQNLCLMDLKLEARTF 654
Query: 133 TAMVDALLYSG 143
M+DALL G
Sbjct: 655 NIMIDALLKVG 665
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 19 VMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V + +I A + ++D+A + + ++GL P++++Y +I K+ +++ M + EQ+
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS---CCNLILDRSTFTA 134
D G P Y +L+ G + E++ EM C N I F +
Sbjct: 433 IDE-------GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIF----FNS 481
Query: 135 MVDALLYSGSI 145
++D+ G +
Sbjct: 482 IIDSHCKEGRV 492
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLD 68
R+ LN V+ AQ++DEA +EK L P+ +++N L+SA K+K +
Sbjct: 161 RKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVR 220
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM-KSCCNLIL 127
E ++D F PD TY+ LL G+ +L E+ EM + C+
Sbjct: 221 KAQEVFENMRDR--------FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCH--P 270
Query: 128 DRSTFTAMVDALLYSGSI 145
D T++ MVD L +G +
Sbjct: 271 DIVTYSIMVDILCKAGRV 288
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
N + N ++ A +++ + +A ++ E++ PDS +Y+IL+ K L
Sbjct: 202 NLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFR 261
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
++ D G HPDI TY+ ++ A + L IV M
Sbjct: 262 EMID-------AGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66
+ R K + V N++I A +A R+ Y++L+ ++ KG+ P+S S NI++ I+ +
Sbjct: 333 MERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGE 392
Query: 67 LDVTMP-FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS 111
D F + +K C PD TY ++ F K++++
Sbjct: 393 KDEAFDVFRKMIK----VC-----EPDADTYTMVIKMFCEKKEMET 429
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQ 76
I++ +IE + DEA+ + + K EPD+ +Y ++I + K+++ +
Sbjct: 381 NIILRHLIERGEK----DEAFDVFRKMIKVCEPDADTYTMVIKMFCEKKEMETADKVWKY 436
Query: 77 LKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS---LLEIVFEM 119
++ G P + T++ L+ G + Q LLE + EM
Sbjct: 437 MRKK-------GVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEM 475
>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740
OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
Length = 727
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 29 EAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87
+A RI+E +IL+ + + L +PD +Y +I + LD ++ ++++ + K
Sbjct: 275 KAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIK---- 330
Query: 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147
PD+ Y TL++G ++ E+ EMK +++DR + +++ + G ++
Sbjct: 331 ---PDVMAYGTLVVGLCKDGRVERGYELFMEMKG-KQILIDREIYRVLIEGFVADGKVRS 386
Query: 148 V----------GLYA-LCIFGEIVKRVCS 165
G A + I+ ++K +CS
Sbjct: 387 ACNLWEDLVDSGYIADIGIYNAVIKGLCS 415
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77
V N ++EA + I ++ + + K G EPDS SY+I I ++ + F+E++
Sbjct: 509 VYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFHEKI 568
Query: 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFE 118
+ C P I Y +L G ++ +++ +V E
Sbjct: 569 IE--MSCV-----PSIAAYLSLTKGLCQIGEIDAVMLLVRE 602
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMP 72
+LN+ V NA+I R+ EA L + K G P +SYNILI K K
Sbjct: 461 ELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASA 520
Query: 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI 115
F +++ +NG K PD+ TY+ LL G + + LE+
Sbjct: 521 FVKEMLENGWK-------PDLKTYSILLCGLCRDRKIDLALEL 556
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78
++NA +EA ++ +++ + E+ G+ P+ +YN+LI K K+ + F + +
Sbjct: 120 LLNAFVEA-KQWVKVESLFAYFETA--GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMW 176
Query: 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK--------SCCNLILD 128
G F PD+F+Y+T++ A L LE+ EM +C N+++D
Sbjct: 177 KEG-------FKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILID 227
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLD 68
+E +K + + VI +A ++D+A ++ + + E+G+ PD YNILI +K K
Sbjct: 177 KEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHK 236
Query: 69 VTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128
M ++L ++ +P++ T+ ++ G + L+I MK D
Sbjct: 237 TAMELWDRLLEDSS------VYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQ-NEREKD 289
Query: 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165
T+++++ L +G++ A +F E+ +R S
Sbjct: 290 LYTYSSLIHGLCDAGNVD----KAESVFNELDERKAS 322
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 15 LNTIVMNAVIEASREAQRIDEAYQILESV-EKGLEPDSLSYNILISACIKTKKLDVTMPF 73
+N + N +I+ E +IDEA I + KG D +Y I I L V
Sbjct: 357 VNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHG------LCVNGYV 410
Query: 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119
N+ L + SSGG H D++ YA+++ K L+ +V EM
Sbjct: 411 NKALGVMQEVESSGG-HLDVYAYASIIDCLCKKKRLEEASNLVKEM 455
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFN 74
N N +I + R+D+ +I E +++ E D +Y+ LI +D
Sbjct: 254 NVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVF 313
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEI--VFEMKSCCNLILDRSTF 132
+L + +K S D+ TY T+L GF ++ LE+ + E K+ N++ ++
Sbjct: 314 NELDE--RKAS-----IDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIV----SY 362
Query: 133 TAMVDALLYSGSI 145
++ LL +G I
Sbjct: 363 NILIKGLLENGKI 375
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 17 TIVMNAVIEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE 75
+ N +I +A + EA + E +E G +PD +Y+IL+ + +K+D+ +
Sbjct: 499 VVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWH 558
Query: 76 QLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIV--FEMKSC-CNLILDRSTF 132
Q + G D+ + L+ G L + ++ E ++C NL+ T+
Sbjct: 559 QFLQS-------GLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLV----TY 607
Query: 133 TAMVDALLYSG 143
+++ G
Sbjct: 608 NTLMEGFFKVG 618
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
N+ V N +I+ + EA +++ ++K G++PD +Y ISAC K ++
Sbjct: 728 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 787
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134
E+++ G K P+I TY TL+ G+ A + L EMK+ + D++ +
Sbjct: 788 EEMEALGVK-------PNIKTYTTLIKGWARASLPEKALSCYEEMKA-MGIKPDKAVYHC 839
Query: 135 MVDALLYSGSIKVVGLYA 152
++ +LL SI +Y+
Sbjct: 840 LLTSLLSRASIAEAYIYS 857
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 36 AYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94
A+ + E V++G++PD + YN +ISA +D + ++++ + P
Sbjct: 538 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHR-------PTTR 590
Query: 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140
T+ ++ G+ + D++ LE VF+M C + TF +++ L+
Sbjct: 591 TFMPIIHGYAKSGDMRRSLE-VFDMMRRCGCVPTVHTFNGLINGLV 635
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104
+GL+ D +Y L+ AC K+ ++ + +++ S+ + F Y L+ G+
Sbjct: 688 EGLDVDIFTYEALLKACCKSGRMQSALAVTKEM-------SARNIPRNSFVYNILIDGWA 740
Query: 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSI 145
D+ +++ +MK + D T+T+ + A +G +
Sbjct: 741 RRGDVWEAADLIQQMKK-EGVKPDIHTYTSFISACSKAGDM 780
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 52/230 (22%)
Query: 32 RIDEAYQILE-SVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG--------- 81
RIDEA Q+ + V KG D +SYN LI+ K K+++ M ++ G
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 82 -------------------QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122
+ G PDI+TY LL G +L+ L ++FE
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL-VIFEDMQK 428
Query: 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182
+ LD T+T ++ + +G ++ A +F + S GL P Y +MM
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVE----EAWSLFCSL-----SLKGLKPDIVTYTTMMSG 479
Query: 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLA 232
L + V++ Y +M ++ G + + L+DG + L+
Sbjct: 480 LCTKGLLHEVEALYTKM-------------KQEGLMKNDCTLSDGDITLS 516
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 19/150 (12%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILES-VEKGLEPDSLSYNILISACIKTKKLDVTMPFN 74
+ + + +++ R+ +A +++ VE G +PD ++YN +I + KTK+++ F
Sbjct: 154 DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFF 213
Query: 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSCCNLILDRST 131
++++ G P++ TY L+ G ++ D LL + + K N+I T
Sbjct: 214 KEIERK-------GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI----T 262
Query: 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVK 161
++A++DA + +G + L A +F E+V+
Sbjct: 263 YSALLDAFVKNGKV----LEAKELFEEMVR 288
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 29/117 (24%)
Query: 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFN 74
NT+ N +I+ +A +D+A + ++ G+ PD +YNIL+ +L+ +
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 423
Query: 75 EQLKDNGQK-------------CSSG---------------GFHPDIFTYATLLMGF 103
E ++ C +G G PDI TY T++ G
Sbjct: 424 EDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,106,562
Number of Sequences: 539616
Number of extensions: 3587930
Number of successful extensions: 10017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 8639
Number of HSP's gapped (non-prelim): 1027
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)