Query 043380
Match_columns 246
No_of_seqs 261 out of 1411
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 04:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8.1E-40 1.7E-44 291.2 27.4 141 88-243 609-749 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.8E-40 1.9E-44 290.9 27.3 221 3-243 493-714 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 7E-37 1.5E-41 268.0 20.9 202 13-239 286-488 (697)
4 PLN03081 pentatricopeptide (PP 100.0 5E-36 1.1E-40 262.7 21.9 221 2-244 310-559 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.1E-34 2.4E-39 259.5 20.8 165 15-200 251-416 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.4E-34 5.1E-39 257.3 22.2 200 14-243 149-384 (857)
7 PRK11788 tetratricopeptide rep 99.7 4E-15 8.6E-20 122.7 24.3 199 18-242 108-311 (389)
8 PRK11788 tetratricopeptide rep 99.7 1E-14 2.2E-19 120.3 23.7 202 13-243 137-348 (389)
9 KOG4422 Uncharacterized conser 99.7 3.7E-14 8E-19 112.2 21.2 213 13-240 203-425 (625)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 8.7E-14 1.9E-18 125.5 24.7 204 14-244 598-801 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.6 1.7E-13 3.6E-18 123.7 25.0 131 17-162 669-799 (899)
12 PF13041 PPR_2: PPR repeat fam 99.6 4E-15 8.7E-20 85.3 6.3 49 15-63 1-50 (50)
13 PF13041 PPR_2: PPR repeat fam 99.6 7E-15 1.5E-19 84.3 6.3 50 91-141 1-50 (50)
14 TIGR02521 type_IV_pilW type IV 99.6 6.4E-12 1.4E-16 95.6 23.7 204 14-242 28-232 (234)
15 TIGR00990 3a0801s09 mitochondr 99.5 4E-11 8.7E-16 104.6 24.7 205 17-242 365-571 (615)
16 PRK15174 Vi polysaccharide exp 99.5 5.2E-11 1.1E-15 104.1 24.8 131 93-242 246-381 (656)
17 PRK15174 Vi polysaccharide exp 99.5 4.8E-11 1E-15 104.4 24.4 132 97-243 216-348 (656)
18 TIGR00990 3a0801s09 mitochondr 99.5 1.3E-10 2.9E-15 101.3 26.2 208 15-243 329-538 (615)
19 PF13429 TPR_15: Tetratricopep 99.4 1.1E-12 2.4E-17 103.4 10.0 199 16-241 77-276 (280)
20 KOG4422 Uncharacterized conser 99.4 1.5E-10 3.2E-15 92.2 20.7 174 48-239 204-382 (625)
21 PF13429 TPR_15: Tetratricopep 99.4 3.7E-12 8E-17 100.4 11.4 202 16-244 43-245 (280)
22 PRK09782 bacteriophage N4 rece 99.4 5.8E-10 1.3E-14 100.6 24.4 202 14-243 506-707 (987)
23 PRK12370 invasion protein regu 99.3 2E-09 4.3E-14 92.7 23.8 181 31-241 318-501 (553)
24 KOG4626 O-linked N-acetylgluco 99.3 1.4E-10 3E-15 96.3 14.3 162 51-241 320-484 (966)
25 PRK09782 bacteriophage N4 rece 99.3 3.8E-09 8.3E-14 95.5 23.9 198 14-239 539-737 (987)
26 TIGR02521 type_IV_pilW type IV 99.3 4.3E-09 9.3E-14 79.9 21.2 168 14-200 62-230 (234)
27 KOG4626 O-linked N-acetylgluco 99.2 3.7E-10 8.1E-15 93.8 14.6 193 20-241 255-450 (966)
28 PRK11447 cellulose synthase su 99.2 1.1E-08 2.4E-13 95.3 25.0 210 16-241 494-739 (1157)
29 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.5E-13 80.3 22.7 200 17-243 64-266 (296)
30 PRK11447 cellulose synthase su 99.2 1.3E-08 2.7E-13 94.9 24.1 199 19-242 463-700 (1157)
31 KOG1126 DNA-binding cell divis 99.2 1.6E-09 3.5E-14 90.4 15.5 160 18-200 354-550 (638)
32 PRK10049 pgaA outer membrane p 99.2 2.5E-08 5.4E-13 89.2 23.2 197 24-244 244-458 (765)
33 PRK12370 invasion protein regu 99.1 1.3E-08 2.8E-13 87.8 20.4 200 15-242 254-470 (553)
34 KOG4318 Bicoid mRNA stability 99.1 1.2E-09 2.6E-14 93.8 13.1 171 4-188 12-286 (1088)
35 PRK10747 putative protoheme IX 99.1 5.7E-08 1.2E-12 80.4 22.8 206 13-240 147-388 (398)
36 PF12854 PPR_1: PPR repeat 99.1 9.8E-11 2.1E-15 60.7 4.0 32 12-43 2-33 (34)
37 COG2956 Predicted N-acetylgluc 99.1 5.8E-08 1.3E-12 75.0 20.6 201 19-245 71-281 (389)
38 TIGR00540 hemY_coli hemY prote 99.1 8E-08 1.7E-12 79.9 22.7 200 20-240 156-397 (409)
39 PRK10049 pgaA outer membrane p 99.1 1.5E-07 3.3E-12 84.2 25.7 209 14-243 46-302 (765)
40 KOG1129 TPR repeat-containing 99.1 6.6E-09 1.4E-13 80.4 14.6 206 13-243 252-459 (478)
41 KOG1840 Kinesin light chain [C 99.1 2.9E-08 6.3E-13 83.0 19.6 224 13-241 195-478 (508)
42 KOG1126 DNA-binding cell divis 99.1 7.3E-09 1.6E-13 86.6 15.6 201 13-241 417-619 (638)
43 PF12854 PPR_1: PPR repeat 99.1 1.9E-10 4E-15 59.7 3.9 33 88-120 2-34 (34)
44 PRK10747 putative protoheme IX 99.0 2.8E-07 6.1E-12 76.3 23.5 162 14-200 184-388 (398)
45 KOG1155 Anaphase-promoting com 99.0 8.6E-08 1.9E-12 77.4 19.1 207 7-241 252-494 (559)
46 PRK14574 hmsH outer membrane p 99.0 1.8E-07 3.9E-12 83.3 23.2 203 22-242 297-513 (822)
47 KOG1155 Anaphase-promoting com 99.0 7.2E-08 1.6E-12 77.8 18.1 203 15-239 328-533 (559)
48 COG2956 Predicted N-acetylgluc 99.0 1.4E-07 3.1E-12 72.9 17.3 193 29-244 47-245 (389)
49 TIGR00540 hemY_coli hemY prote 98.9 3.2E-07 6.9E-12 76.3 19.9 189 30-242 97-292 (409)
50 TIGR03302 OM_YfiO outer membra 98.9 3.1E-07 6.8E-12 70.5 17.6 170 49-244 31-234 (235)
51 TIGR03302 OM_YfiO outer membra 98.9 4.2E-07 9.1E-12 69.8 18.0 170 14-202 30-232 (235)
52 PRK14574 hmsH outer membrane p 98.9 6.5E-07 1.4E-11 79.8 20.9 186 24-238 41-228 (822)
53 KOG2003 TPR repeat-containing 98.9 2.9E-07 6.3E-12 74.4 16.9 147 30-198 503-651 (840)
54 COG3063 PilF Tfp pilus assembl 98.9 6.6E-07 1.4E-11 66.2 16.9 164 54-243 38-203 (250)
55 KOG1129 TPR repeat-containing 98.9 8E-08 1.7E-12 74.5 12.7 195 21-241 227-423 (478)
56 KOG1070 rRNA processing protei 98.8 1.3E-06 2.9E-11 79.0 21.2 204 13-244 1454-1665(1710)
57 COG3063 PilF Tfp pilus assembl 98.8 1.2E-05 2.5E-10 59.8 22.5 198 19-242 37-236 (250)
58 KOG4318 Bicoid mRNA stability 98.8 1.1E-07 2.3E-12 82.3 13.2 179 39-246 12-237 (1088)
59 cd05804 StaR_like StaR_like; a 98.8 4.6E-06 1E-10 68.0 22.3 199 19-240 8-213 (355)
60 KOG0547 Translocase of outer m 98.8 9.1E-07 2E-11 72.1 17.4 214 4-240 348-564 (606)
61 KOG2003 TPR repeat-containing 98.8 1.5E-06 3.2E-11 70.4 18.0 186 26-239 533-719 (840)
62 COG3071 HemY Uncharacterized e 98.8 8.7E-06 1.9E-10 64.8 21.5 207 14-240 150-388 (400)
63 COG5010 TadD Flp pilus assembl 98.8 2.1E-06 4.6E-11 64.7 16.7 159 21-200 70-229 (257)
64 KOG1840 Kinesin light chain [C 98.7 1.5E-06 3.2E-11 73.0 17.0 183 13-200 279-477 (508)
65 cd05804 StaR_like StaR_like; a 98.7 1.6E-05 3.4E-10 64.9 22.8 215 18-244 115-338 (355)
66 PF04733 Coatomer_E: Coatomer 98.7 7.1E-07 1.5E-11 70.4 13.9 152 60-243 111-266 (290)
67 PF12569 NARP1: NMDA receptor- 98.7 5.9E-05 1.3E-09 64.1 25.5 215 13-241 34-333 (517)
68 PF12569 NARP1: NMDA receptor- 98.6 1.6E-05 3.4E-10 67.5 20.8 199 24-241 11-256 (517)
69 PRK11189 lipoprotein NlpI; Pro 98.6 2.2E-05 4.8E-10 62.5 20.6 148 31-200 40-192 (296)
70 PRK15359 type III secretion sy 98.6 2.9E-06 6.3E-11 59.9 13.4 109 13-132 20-128 (144)
71 TIGR00756 PPR pentatricopeptid 98.6 1.2E-07 2.7E-12 49.4 4.2 34 95-129 2-35 (35)
72 PF10037 MRP-S27: Mitochondria 98.6 1.4E-06 3E-11 71.6 12.0 131 4-142 53-186 (429)
73 PF04733 Coatomer_E: Coatomer 98.6 1.2E-06 2.6E-11 69.1 11.1 152 24-202 109-265 (290)
74 KOG1173 Anaphase-promoting com 98.5 1.5E-05 3.3E-10 66.2 17.4 127 102-241 389-517 (611)
75 COG3071 HemY Uncharacterized e 98.5 0.00019 4.1E-09 57.4 22.8 205 19-244 120-359 (400)
76 KOG1128 Uncharacterized conser 98.5 4E-06 8.7E-11 71.4 14.3 116 106-241 498-615 (777)
77 TIGR00756 PPR pentatricopeptid 98.5 1.6E-07 3.6E-12 48.9 4.1 33 19-51 2-35 (35)
78 PF13812 PPR_3: Pentatricopept 98.5 2E-07 4.3E-12 48.3 4.2 33 94-127 2-34 (34)
79 PRK10370 formate-dependent nit 98.5 1.2E-05 2.7E-10 59.9 15.1 130 31-182 53-186 (198)
80 PRK15179 Vi polysaccharide bio 98.5 5.3E-05 1.1E-09 66.7 20.6 134 46-201 81-216 (694)
81 KOG2076 RNA polymerase III tra 98.5 0.00011 2.3E-09 64.4 21.9 204 13-241 135-344 (895)
82 KOG0495 HAT repeat protein [RN 98.5 0.00023 4.9E-09 60.6 22.8 203 19-242 552-782 (913)
83 KOG0495 HAT repeat protein [RN 98.5 9.2E-05 2E-09 62.9 20.5 198 16-238 583-812 (913)
84 KOG1915 Cell cycle control pro 98.5 3E-05 6.5E-10 63.4 17.1 189 28-242 84-273 (677)
85 KOG2002 TPR-containing nuclear 98.5 1.1E-05 2.3E-10 70.9 15.5 189 31-241 544-744 (1018)
86 COG5010 TadD Flp pilus assembl 98.5 2E-05 4.4E-10 59.5 15.0 135 13-161 96-230 (257)
87 PF10037 MRP-S27: Mitochondria 98.5 4.4E-06 9.6E-11 68.7 12.4 126 46-186 61-186 (429)
88 TIGR02552 LcrH_SycD type III s 98.5 1.2E-05 2.6E-10 56.0 13.1 109 16-135 16-124 (135)
89 KOG2002 TPR-containing nuclear 98.4 0.00012 2.6E-09 64.6 20.2 216 5-241 440-708 (1018)
90 PRK10370 formate-dependent nit 98.4 0.00014 3.1E-09 54.2 18.2 148 24-203 23-174 (198)
91 PRK15179 Vi polysaccharide bio 98.4 7.2E-05 1.6E-09 65.9 18.4 160 13-200 82-243 (694)
92 COG4783 Putative Zn-dependent 98.4 0.0005 1.1E-08 56.6 21.7 163 13-199 270-434 (484)
93 KOG2076 RNA polymerase III tra 98.4 6.6E-05 1.4E-09 65.6 17.7 201 23-240 286-510 (895)
94 PRK15359 type III secretion sy 98.4 5.1E-05 1.1E-09 53.6 14.4 107 38-162 14-121 (144)
95 PF13812 PPR_3: Pentatricopept 98.3 1.1E-06 2.4E-11 45.5 4.3 33 130-171 2-34 (34)
96 PF08579 RPM2: Mitochondrial r 98.3 1.5E-05 3.3E-10 52.4 10.3 81 54-142 28-117 (120)
97 KOG1128 Uncharacterized conser 98.3 4.2E-05 9E-10 65.5 15.6 189 13-242 394-582 (777)
98 KOG1070 rRNA processing protei 98.3 0.00034 7.4E-09 64.1 22.0 188 19-231 1499-1689(1710)
99 PF05843 Suf: Suppressor of fo 98.3 3.4E-05 7.4E-10 60.8 14.1 134 94-242 2-136 (280)
100 PF01535 PPR: PPR repeat; Int 98.3 8.2E-07 1.8E-11 44.8 3.2 31 94-125 1-31 (31)
101 KOG1125 TPR repeat-containing 98.3 0.00011 2.5E-09 61.3 17.0 190 25-240 293-525 (579)
102 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.9E-05 8.5E-10 62.8 14.4 122 21-160 173-295 (395)
103 PF08579 RPM2: Mitochondrial r 98.3 3.5E-05 7.6E-10 50.7 10.9 85 95-185 27-116 (120)
104 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.8E-05 1.2E-09 61.9 14.3 124 95-239 171-294 (395)
105 KOG1915 Cell cycle control pro 98.2 0.00091 2E-08 55.1 20.6 206 14-244 319-538 (677)
106 TIGR02552 LcrH_SycD type III s 98.2 0.00012 2.5E-09 51.0 14.1 99 50-162 16-114 (135)
107 PF01535 PPR: PPR repeat; Int 98.2 1.5E-06 3.3E-11 43.8 3.2 29 215-243 2-30 (31)
108 cd00189 TPR Tetratricopeptide 98.2 4E-05 8.6E-10 48.9 10.8 94 20-121 3-96 (100)
109 PRK14720 transcript cleavage f 98.2 0.00044 9.4E-09 62.1 19.6 205 13-242 27-252 (906)
110 KOG1174 Anaphase-promoting com 98.2 0.00029 6.2E-09 56.9 16.5 211 13-241 228-499 (564)
111 PF09976 TPR_21: Tetratricopep 98.2 0.00024 5.2E-09 50.2 14.8 129 93-238 12-143 (145)
112 PF09976 TPR_21: Tetratricopep 98.2 0.00031 6.8E-09 49.6 15.1 127 17-158 12-143 (145)
113 PLN02789 farnesyltranstransfer 98.2 0.0021 4.5E-08 51.6 21.2 196 19-241 39-249 (320)
114 PF05843 Suf: Suppressor of fo 98.2 0.00024 5.2E-09 56.0 15.7 129 18-162 2-136 (280)
115 KOG1173 Anaphase-promoting com 98.1 0.00034 7.3E-09 58.5 16.4 204 14-241 275-483 (611)
116 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00012 2.7E-09 49.4 11.9 102 132-243 5-106 (119)
117 KOG0547 Translocase of outer m 98.1 0.00049 1.1E-08 56.7 16.6 189 27-241 336-531 (606)
118 KOG3081 Vesicle coat complex C 98.1 0.0013 2.8E-08 50.2 17.1 152 58-241 115-270 (299)
119 KOG3081 Vesicle coat complex C 98.1 0.0024 5.2E-08 48.8 18.4 164 13-203 104-272 (299)
120 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.0003 6.6E-09 47.4 12.7 102 52-162 3-105 (119)
121 COG4783 Putative Zn-dependent 98.0 0.001 2.3E-08 54.7 17.3 142 24-203 313-455 (484)
122 KOG3060 Uncharacterized conser 98.0 0.0028 6E-08 48.1 19.1 151 31-201 26-182 (289)
123 KOG1914 mRNA cleavage and poly 98.0 0.0037 8E-08 52.4 20.2 153 67-241 347-500 (656)
124 PLN02789 farnesyltranstransfer 98.0 0.0045 9.8E-08 49.7 21.9 203 16-240 70-300 (320)
125 PF06239 ECSIT: Evolutionarily 98.0 0.00036 7.8E-09 51.7 12.2 114 37-162 34-168 (228)
126 cd00189 TPR Tetratricopeptide 98.0 0.00016 3.4E-09 46.0 9.5 98 131-244 2-99 (100)
127 KOG4340 Uncharacterized conser 97.9 0.0025 5.3E-08 49.7 16.7 195 19-244 12-209 (459)
128 PF14938 SNAP: Soluble NSF att 97.9 0.0012 2.6E-08 52.2 15.7 214 17-239 35-263 (282)
129 KOG1156 N-terminal acetyltrans 97.9 0.0023 4.9E-08 54.6 17.3 193 27-244 51-250 (700)
130 KOG1125 TPR repeat-containing 97.9 0.0035 7.6E-08 52.7 17.9 134 88-235 425-564 (579)
131 PF06239 ECSIT: Evolutionarily 97.9 0.00026 5.7E-09 52.4 10.2 104 90-199 44-165 (228)
132 PLN03088 SGT1, suppressor of 97.9 0.0005 1.1E-08 56.2 13.0 102 24-136 9-110 (356)
133 PRK04841 transcriptional regul 97.8 0.0083 1.8E-07 55.3 21.7 216 19-241 493-719 (903)
134 PRK02603 photosystem I assembl 97.8 0.0025 5.5E-08 46.4 13.9 85 50-144 34-121 (172)
135 KOG3785 Uncharacterized conser 97.8 0.00079 1.7E-08 53.5 11.6 190 21-241 289-489 (557)
136 PRK10866 outer membrane biogen 97.7 0.011 2.5E-07 45.5 21.3 185 17-240 32-239 (243)
137 PF14559 TPR_19: Tetratricopep 97.7 0.00016 3.5E-09 43.7 6.4 65 28-101 2-66 (68)
138 KOG1174 Anaphase-promoting com 97.7 0.009 1.9E-07 48.6 17.3 151 31-203 314-501 (564)
139 KOG2053 Mitochondrial inherita 97.7 0.014 3.1E-07 51.7 19.6 106 29-147 21-128 (932)
140 CHL00033 ycf3 photosystem I as 97.7 0.0032 6.8E-08 45.6 13.7 95 16-118 34-138 (168)
141 PF12921 ATP13: Mitochondrial 97.7 0.0016 3.5E-08 44.6 11.3 103 16-144 1-103 (126)
142 PRK02603 photosystem I assembl 97.7 0.0042 9.2E-08 45.2 14.4 116 16-144 34-166 (172)
143 PLN03088 SGT1, suppressor of 97.7 0.0014 3E-08 53.7 12.9 90 58-162 9-99 (356)
144 PF12921 ATP13: Mitochondrial 97.7 0.00096 2.1E-08 45.7 10.2 89 92-188 1-103 (126)
145 KOG3060 Uncharacterized conser 97.7 0.013 2.8E-07 44.7 18.4 169 13-203 47-221 (289)
146 KOG2376 Signal recognition par 97.7 0.012 2.6E-07 49.9 18.0 201 22-244 17-255 (652)
147 PRK10153 DNA-binding transcrip 97.6 0.0074 1.6E-07 51.8 17.0 139 11-162 331-482 (517)
148 PF12895 Apc3: Anaphase-promot 97.6 0.00023 5E-09 45.1 6.0 81 64-158 2-83 (84)
149 KOG1156 N-terminal acetyltrans 97.6 0.032 7E-07 47.9 19.8 139 90-241 366-510 (700)
150 CHL00033 ycf3 photosystem I as 97.6 0.0036 7.8E-08 45.3 13.0 95 50-158 34-138 (168)
151 PF12895 Apc3: Anaphase-promot 97.6 0.0003 6.5E-09 44.6 6.4 76 107-197 3-82 (84)
152 KOG3616 Selective LIM binding 97.6 0.0018 3.9E-08 56.3 12.2 123 3-147 720-842 (1636)
153 PRK04841 transcriptional regul 97.6 0.033 7.1E-07 51.5 21.5 211 21-241 413-640 (903)
154 PF14938 SNAP: Soluble NSF att 97.6 0.0096 2.1E-07 47.1 15.6 181 53-242 37-225 (282)
155 KOG2053 Mitochondrial inherita 97.5 0.051 1.1E-06 48.4 20.6 210 15-244 40-257 (932)
156 PF14559 TPR_19: Tetratricopep 97.5 0.00036 7.9E-09 42.1 5.8 64 62-136 2-65 (68)
157 KOG1914 mRNA cleavage and poly 97.5 0.046 9.9E-07 46.2 18.9 147 33-200 347-499 (656)
158 PF13432 TPR_16: Tetratricopep 97.5 0.0007 1.5E-08 40.5 6.6 58 23-80 3-60 (65)
159 PRK10803 tol-pal system protei 97.5 0.0029 6.3E-08 49.3 11.4 106 129-244 143-248 (263)
160 PRK15363 pathogenicity island 97.4 0.0041 8.8E-08 44.0 10.7 95 52-162 36-132 (157)
161 KOG1127 TPR repeat-containing 97.4 0.0078 1.7E-07 54.0 14.5 183 33-241 474-658 (1238)
162 PF03704 BTAD: Bacterial trans 97.4 0.0069 1.5E-07 42.7 12.0 75 95-176 64-139 (146)
163 KOG2047 mRNA splicing factor [ 97.4 0.073 1.6E-06 45.9 19.6 115 20-140 141-292 (835)
164 KOG3616 Selective LIM binding 97.4 0.0037 8.1E-08 54.4 11.7 22 96-117 768-789 (1636)
165 PRK10153 DNA-binding transcrip 97.4 0.018 3.9E-07 49.5 15.9 138 46-203 332-483 (517)
166 PRK10803 tol-pal system protei 97.3 0.0051 1.1E-07 47.9 11.0 101 93-203 143-247 (263)
167 PRK15363 pathogenicity island 97.3 0.021 4.6E-07 40.5 12.9 98 19-124 37-134 (157)
168 KOG3617 WD40 and TPR repeat-co 97.3 0.0057 1.2E-07 53.9 11.7 166 28-241 811-995 (1416)
169 KOG2047 mRNA splicing factor [ 97.2 0.11 2.5E-06 44.9 18.5 169 53-241 104-276 (835)
170 PF12688 TPR_5: Tetratrico pep 97.2 0.031 6.7E-07 38.0 13.2 105 23-141 7-118 (120)
171 PF13414 TPR_11: TPR repeat; P 97.2 0.0023 5E-08 38.7 6.4 65 16-80 2-67 (69)
172 PF13525 YfiO: Outer membrane 97.2 0.057 1.2E-06 40.4 16.4 181 22-233 10-198 (203)
173 PF13432 TPR_16: Tetratricopep 97.2 0.0049 1.1E-07 36.7 7.7 57 99-162 3-60 (65)
174 KOG4340 Uncharacterized conser 97.2 0.019 4.1E-07 44.9 12.4 206 15-239 142-372 (459)
175 PRK14720 transcript cleavage f 97.2 0.014 3.1E-07 52.8 13.3 132 88-241 25-177 (906)
176 PF13414 TPR_11: TPR repeat; P 97.1 0.0042 9.2E-08 37.5 7.3 64 92-162 2-67 (69)
177 KOG3785 Uncharacterized conser 97.1 0.096 2.1E-06 42.1 17.6 149 33-203 339-491 (557)
178 KOG0985 Vesicle coat protein c 97.1 0.054 1.2E-06 49.2 16.2 81 19-113 1106-1186(1666)
179 KOG0553 TPR repeat-containing 97.1 0.012 2.7E-07 45.8 10.9 97 26-134 90-187 (304)
180 PF04840 Vps16_C: Vps16, C-ter 97.1 0.072 1.6E-06 42.8 15.7 106 95-235 179-284 (319)
181 KOG0553 TPR repeat-containing 97.1 0.01 2.3E-07 46.1 10.1 100 61-182 91-191 (304)
182 PF13424 TPR_12: Tetratricopep 97.0 0.0015 3.3E-08 40.6 4.8 69 51-121 5-74 (78)
183 PF13424 TPR_12: Tetratricopep 97.0 0.0014 3.1E-08 40.7 4.5 68 129-200 5-73 (78)
184 PF13281 DUF4071: Domain of un 97.0 0.14 3E-06 41.9 17.9 191 4-207 125-339 (374)
185 KOG1127 TPR repeat-containing 96.9 0.064 1.4E-06 48.5 15.0 161 18-200 493-657 (1238)
186 PF03704 BTAD: Bacterial trans 96.9 0.01 2.2E-07 41.9 8.4 76 18-95 63-138 (146)
187 KOG0985 Vesicle coat protein c 96.9 0.14 3E-06 46.7 16.5 53 92-147 1132-1184(1666)
188 KOG3617 WD40 and TPR repeat-co 96.8 0.032 7E-07 49.4 12.1 185 16-239 756-964 (1416)
189 KOG4162 Predicted calmodulin-b 96.8 0.34 7.3E-06 42.8 18.8 126 95-240 652-781 (799)
190 PF13371 TPR_9: Tetratricopept 96.8 0.014 3E-07 35.6 7.4 56 100-162 2-58 (73)
191 PF12688 TPR_5: Tetratrico pep 96.8 0.086 1.9E-06 35.8 13.0 104 58-184 8-117 (120)
192 PF13371 TPR_9: Tetratricopept 96.8 0.013 2.8E-07 35.7 7.1 57 24-80 2-58 (73)
193 COG3898 Uncharacterized membra 96.7 0.25 5.3E-06 40.4 18.9 127 19-162 84-217 (531)
194 KOG1538 Uncharacterized conser 96.7 0.37 8.1E-06 41.9 17.2 201 2-241 620-845 (1081)
195 COG1729 Uncharacterized protei 96.7 0.038 8.3E-07 42.6 10.5 105 130-245 143-247 (262)
196 KOG2796 Uncharacterized conser 96.7 0.21 4.5E-06 38.6 15.3 133 55-205 181-318 (366)
197 PF04053 Coatomer_WDAD: Coatom 96.6 0.19 4E-06 42.4 15.1 157 25-238 269-427 (443)
198 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.067 1.4E-06 44.3 11.9 132 94-241 398-530 (660)
199 KOG4162 Predicted calmodulin-b 96.6 0.47 1E-05 41.9 19.2 215 8-242 314-542 (799)
200 PF04840 Vps16_C: Vps16, C-ter 96.6 0.29 6.3E-06 39.4 18.4 88 130-241 178-265 (319)
201 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.11 2.3E-06 43.3 12.4 64 49-121 73-140 (453)
202 PF10300 DUF3808: Protein of u 96.5 0.25 5.4E-06 42.1 15.2 164 56-241 193-375 (468)
203 COG4235 Cytochrome c biogenesi 96.4 0.32 7E-06 38.1 14.8 102 46-162 151-256 (287)
204 COG4700 Uncharacterized protei 96.4 0.24 5.2E-06 36.3 16.9 135 89-239 85-219 (251)
205 KOG1585 Protein required for f 96.3 0.34 7.3E-06 37.1 14.6 207 17-236 31-250 (308)
206 COG4700 Uncharacterized protei 96.3 0.28 6.1E-06 35.9 15.8 154 24-200 63-224 (251)
207 PF13170 DUF4003: Protein of u 96.2 0.26 5.7E-06 39.2 13.1 123 67-203 78-212 (297)
208 COG4235 Cytochrome c biogenesi 96.2 0.26 5.7E-06 38.6 12.4 113 13-137 152-268 (287)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.1 0.67 1.5E-05 38.7 14.8 147 17-186 397-548 (660)
210 PF13170 DUF4003: Protein of u 96.0 0.46 1E-05 37.9 13.7 155 33-202 78-250 (297)
211 COG1729 Uncharacterized protei 96.0 0.3 6.4E-06 37.8 12.1 100 53-162 144-244 (262)
212 KOG2041 WD40 repeat protein [G 96.0 0.17 3.7E-06 44.3 11.7 134 91-242 807-952 (1189)
213 PF13525 YfiO: Outer membrane 96.0 0.4 8.6E-06 35.9 12.8 152 58-244 12-172 (203)
214 KOG2796 Uncharacterized conser 96.0 0.53 1.1E-05 36.5 17.2 135 95-245 179-318 (366)
215 KOG2041 WD40 repeat protein [G 95.9 0.42 9.2E-06 42.0 13.5 148 13-200 688-849 (1189)
216 KOG0548 Molecular co-chaperone 95.9 0.72 1.6E-05 39.1 14.6 166 15-202 255-455 (539)
217 KOG3941 Intermediate in Toll s 95.8 0.11 2.3E-06 40.6 8.9 105 90-200 64-186 (406)
218 KOG0624 dsRNA-activated protei 95.8 0.76 1.6E-05 37.1 17.6 193 24-240 162-368 (504)
219 KOG3941 Intermediate in Toll s 95.8 0.24 5.2E-06 38.7 10.7 103 48-161 64-187 (406)
220 smart00299 CLH Clathrin heavy 95.8 0.39 8.4E-06 33.5 11.9 127 54-225 10-137 (140)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.21 4.6E-06 41.6 11.1 67 13-80 71-141 (453)
222 COG3629 DnrI DNA-binding trans 95.8 0.16 3.4E-06 39.8 9.7 85 16-102 152-236 (280)
223 KOG2610 Uncharacterized conser 95.7 0.48 1E-05 38.0 12.2 152 30-198 116-272 (491)
224 KOG0548 Molecular co-chaperone 95.6 0.14 2.9E-06 43.2 9.4 104 59-183 10-114 (539)
225 PF07079 DUF1347: Protein of u 95.6 1.2 2.6E-05 37.3 15.4 141 29-186 18-180 (549)
226 COG3629 DnrI DNA-binding trans 95.5 0.3 6.6E-06 38.3 10.4 82 95-182 155-236 (280)
227 PF10602 RPN7: 26S proteasome 95.4 0.36 7.8E-06 35.3 10.2 124 52-189 37-172 (177)
228 PRK15331 chaperone protein Sic 95.3 0.48 1E-05 33.9 10.0 121 68-201 10-133 (165)
229 KOG0543 FKBP-type peptidyl-pro 95.3 0.55 1.2E-05 38.4 11.4 125 24-162 215-355 (397)
230 PF07035 Mic1: Colon cancer-as 95.2 0.8 1.7E-05 33.0 15.8 136 71-242 14-149 (167)
231 COG3118 Thioredoxin domain-con 95.2 1.2 2.6E-05 35.1 14.7 153 60-237 143-296 (304)
232 PF04053 Coatomer_WDAD: Coatom 95.1 1.3 2.8E-05 37.5 13.8 135 17-200 295-429 (443)
233 KOG2280 Vacuolar assembly/sort 94.9 2.1 4.6E-05 38.0 14.5 100 116-239 671-770 (829)
234 PF13512 TPR_18: Tetratricopep 94.9 0.85 1.8E-05 31.9 12.0 62 136-204 17-78 (142)
235 KOG1130 Predicted G-alpha GTPa 94.9 0.15 3.2E-06 41.9 7.3 135 96-241 198-343 (639)
236 PF13512 TPR_18: Tetratricopep 94.9 0.74 1.6E-05 32.2 9.8 81 22-109 15-98 (142)
237 PF10300 DUF3808: Protein of u 94.8 2.2 4.9E-05 36.5 15.3 162 21-200 192-374 (468)
238 smart00299 CLH Clathrin heavy 94.8 0.9 1.9E-05 31.6 13.0 110 97-238 11-121 (140)
239 PF13428 TPR_14: Tetratricopep 94.7 0.15 3.3E-06 27.6 5.1 40 18-57 2-41 (44)
240 KOG2610 Uncharacterized conser 94.7 1.9 4E-05 34.8 12.8 153 63-238 115-272 (491)
241 KOG0624 dsRNA-activated protei 94.7 1.9 4.2E-05 34.9 20.3 196 21-242 42-252 (504)
242 KOG2376 Signal recognition par 94.7 2.6 5.7E-05 36.4 17.4 164 19-202 341-520 (652)
243 PF13428 TPR_14: Tetratricopep 94.4 0.11 2.5E-06 28.1 4.1 30 215-244 3-32 (44)
244 PRK15331 chaperone protein Sic 94.4 0.43 9.4E-06 34.2 8.0 87 62-162 48-134 (165)
245 PF13176 TPR_7: Tetratricopept 94.4 0.11 2.5E-06 26.7 3.9 26 215-240 1-26 (36)
246 PF04184 ST7: ST7 protein; In 94.4 2.8 6E-05 35.6 16.4 108 64-181 213-339 (539)
247 PF00637 Clathrin: Region in C 94.4 0.0037 8E-08 43.9 -2.5 129 57-229 13-141 (143)
248 cd00923 Cyt_c_Oxidase_Va Cytoc 94.3 0.32 7E-06 31.3 6.3 51 9-59 34-84 (103)
249 PF02284 COX5A: Cytochrome c o 94.3 0.28 6.1E-06 31.9 6.1 49 11-59 39-87 (108)
250 PF02284 COX5A: Cytochrome c o 94.3 0.63 1.4E-05 30.4 7.6 62 109-181 26-87 (108)
251 PF09205 DUF1955: Domain of un 94.1 1.3 2.8E-05 30.6 11.6 139 62-244 13-151 (161)
252 PF10602 RPN7: 26S proteasome 94.0 1.8 3.8E-05 31.7 12.9 101 94-203 37-143 (177)
253 PF07035 Mic1: Colon cancer-as 93.9 1.7 3.7E-05 31.4 13.5 136 2-162 14-149 (167)
254 PF13929 mRNA_stabil: mRNA sta 93.9 1.4 3E-05 34.7 10.4 116 32-157 143-262 (292)
255 KOG2114 Vacuolar assembly/sort 93.9 2.8 6E-05 37.8 13.1 83 50-147 363-449 (933)
256 cd00923 Cyt_c_Oxidase_Va Cytoc 93.8 0.87 1.9E-05 29.4 7.6 63 108-181 22-84 (103)
257 KOG0543 FKBP-type peptidyl-pro 93.7 2 4.3E-05 35.3 11.3 128 59-201 216-354 (397)
258 KOG4555 TPR repeat-containing 93.4 1.8 3.9E-05 29.9 10.9 90 60-162 52-144 (175)
259 PF13176 TPR_7: Tetratricopept 93.3 0.21 4.6E-06 25.7 3.7 23 20-42 2-24 (36)
260 PRK10866 outer membrane biogen 93.2 3.2 6.9E-05 32.1 17.4 159 22-200 74-239 (243)
261 PF08631 SPO22: Meiosis protei 93.0 3.7 8E-05 32.4 18.4 105 16-130 83-193 (278)
262 KOG4555 TPR repeat-containing 92.9 2.2 4.7E-05 29.5 11.1 92 25-124 51-145 (175)
263 PF09205 DUF1955: Domain of un 92.9 2.2 4.7E-05 29.5 10.8 60 94-159 87-146 (161)
264 COG1747 Uncharacterized N-term 92.7 6 0.00013 33.9 18.3 167 46-241 61-233 (711)
265 KOG2280 Vacuolar assembly/sort 92.6 1.2 2.6E-05 39.4 9.1 109 95-237 686-794 (829)
266 KOG4570 Uncharacterized conser 92.5 1.4 3E-05 35.2 8.5 102 11-121 58-163 (418)
267 COG0457 NrfG FOG: TPR repeat [ 92.4 3.2 7E-05 30.3 23.0 199 17-242 59-265 (291)
268 KOG0550 Molecular chaperone (D 92.3 3.2 7E-05 34.4 10.6 169 49-242 166-350 (486)
269 KOG1920 IkappaB kinase complex 92.2 10 0.00023 35.8 18.1 194 15-239 789-1025(1265)
270 COG4105 ComL DNA uptake lipopr 92.2 4.4 9.6E-05 31.3 19.3 52 182-236 176-227 (254)
271 PF04184 ST7: ST7 protein; In 91.9 5.3 0.00011 34.0 11.6 81 21-108 263-346 (539)
272 KOG1920 IkappaB kinase complex 91.8 2.7 5.8E-05 39.4 10.6 146 19-201 895-1054(1265)
273 KOG4570 Uncharacterized conser 91.4 1.8 3.9E-05 34.5 8.0 50 108-162 115-164 (418)
274 PF13374 TPR_10: Tetratricopep 91.3 0.59 1.3E-05 24.4 4.0 28 215-242 4-31 (42)
275 PF09613 HrpB1_HrpK: Bacterial 91.2 4.1 9E-05 29.1 11.8 61 95-162 9-73 (160)
276 PF00515 TPR_1: Tetratricopept 91.2 0.64 1.4E-05 23.2 3.9 27 95-121 3-29 (34)
277 KOG1585 Protein required for f 91.1 5.9 0.00013 30.6 11.0 186 33-238 9-215 (308)
278 KOG0550 Molecular chaperone (D 90.7 4.3 9.4E-05 33.7 9.8 91 61-162 259-350 (486)
279 COG3898 Uncharacterized membra 90.6 8.9 0.00019 31.8 17.3 154 28-203 131-293 (531)
280 TIGR02561 HrpB1_HrpK type III 90.5 4.7 0.0001 28.5 8.8 52 104-162 21-73 (153)
281 PF04097 Nic96: Nup93/Nic96; 90.4 12 0.00027 33.3 14.5 46 18-64 113-158 (613)
282 PF13374 TPR_10: Tetratricopep 90.4 0.85 1.8E-05 23.8 4.2 25 95-119 4-28 (42)
283 PF00637 Clathrin: Region in C 89.8 0.39 8.5E-06 33.5 3.1 86 135-241 13-98 (143)
284 PF13174 TPR_6: Tetratricopept 89.8 0.79 1.7E-05 22.5 3.5 29 216-244 3-31 (33)
285 PF13762 MNE1: Mitochondrial s 89.4 5.8 0.00013 27.9 11.1 94 88-190 32-132 (145)
286 PRK11906 transcriptional regul 89.4 12 0.00027 31.6 16.3 161 18-198 252-432 (458)
287 PF07719 TPR_2: Tetratricopept 89.3 1.5 3.2E-05 21.6 4.4 30 215-244 3-32 (34)
288 PF00515 TPR_1: Tetratricopept 89.3 1.4 3.1E-05 21.9 4.3 29 215-243 3-31 (34)
289 COG4455 ImpE Protein of avirul 89.3 4.1 9E-05 30.8 8.0 80 19-103 3-82 (273)
290 COG3118 Thioredoxin domain-con 89.1 9.8 0.00021 30.2 16.8 149 23-190 140-289 (304)
291 PF11207 DUF2989: Protein of u 89.1 7.3 0.00016 29.1 9.2 74 111-192 124-197 (203)
292 KOG1130 Predicted G-alpha GTPa 88.9 0.53 1.1E-05 38.8 3.5 67 174-240 196-262 (639)
293 PRK11906 transcriptional regul 88.3 15 0.00032 31.2 14.2 160 52-236 252-430 (458)
294 PF07719 TPR_2: Tetratricopept 88.1 1.5 3.3E-05 21.6 3.9 27 95-121 3-29 (34)
295 PF02259 FAT: FAT domain; Int 88.0 13 0.00028 30.1 15.7 200 24-241 5-212 (352)
296 PF13929 mRNA_stabil: mRNA sta 87.4 13 0.00028 29.5 16.0 117 109-237 144-262 (292)
297 PF13281 DUF4071: Domain of un 87.1 16 0.00034 30.3 14.5 125 24-162 186-334 (374)
298 TIGR03504 FimV_Cterm FimV C-te 87.1 1.2 2.7E-05 24.1 3.2 25 219-243 5-29 (44)
299 PF11207 DUF2989: Protein of u 87.1 8.4 0.00018 28.7 8.5 21 127-147 176-196 (203)
300 KOG0276 Vesicle coat complex C 87.0 8.5 0.00018 33.7 9.5 29 129-161 666-694 (794)
301 PF07079 DUF1347: Protein of u 86.9 18 0.00039 30.7 15.0 200 29-243 91-328 (549)
302 PF13181 TPR_8: Tetratricopept 86.8 2.4 5.2E-05 20.9 4.2 28 215-242 3-30 (34)
303 KOG1538 Uncharacterized conser 86.6 7.2 0.00016 34.5 8.9 114 26-162 712-846 (1081)
304 KOG4077 Cytochrome c oxidase, 86.3 5 0.00011 27.5 6.4 49 10-58 77-125 (149)
305 PF07721 TPR_4: Tetratricopept 85.9 1.5 3.3E-05 20.5 2.9 22 216-237 4-25 (26)
306 PF09613 HrpB1_HrpK: Bacterial 85.5 11 0.00024 27.0 11.8 113 19-147 9-127 (160)
307 PF13181 TPR_8: Tetratricopept 85.3 1.8 4E-05 21.4 3.3 27 95-121 3-29 (34)
308 KOG0276 Vesicle coat complex C 85.2 17 0.00037 32.0 10.4 101 62-200 648-748 (794)
309 KOG4077 Cytochrome c oxidase, 85.2 9.9 0.00022 26.1 7.4 47 111-162 67-113 (149)
310 COG0457 NrfG FOG: TPR repeat [ 84.3 13 0.00029 26.9 19.2 170 13-203 91-266 (291)
311 PF13431 TPR_17: Tetratricopep 84.2 1.5 3.2E-05 22.2 2.6 24 14-37 10-33 (34)
312 COG3947 Response regulator con 84.2 5.8 0.00013 31.5 6.7 56 56-119 284-339 (361)
313 PF13431 TPR_17: Tetratricopep 84.1 1.4 3E-05 22.3 2.4 21 127-147 10-31 (34)
314 KOG1258 mRNA processing protei 84.0 29 0.00062 30.4 12.2 134 92-241 44-179 (577)
315 COG4105 ComL DNA uptake lipopr 83.0 20 0.00043 27.8 14.1 88 49-143 33-120 (254)
316 KOG0686 COP9 signalosome, subu 82.9 26 0.00057 29.2 10.8 172 52-241 151-332 (466)
317 KOG1941 Acetylcholine receptor 82.9 25 0.00055 29.0 11.6 211 19-240 45-273 (518)
318 PF11846 DUF3366: Domain of un 82.1 10 0.00022 28.1 7.4 63 96-162 111-173 (193)
319 PF10579 Rapsyn_N: Rapsyn N-te 81.8 5.3 0.00012 24.8 4.7 49 98-147 12-61 (80)
320 KOG2114 Vacuolar assembly/sort 80.6 30 0.00064 31.7 10.4 88 19-119 366-457 (933)
321 COG4455 ImpE Protein of avirul 80.3 17 0.00036 27.8 7.6 82 95-186 3-85 (273)
322 PF11846 DUF3366: Domain of un 80.1 9.6 0.00021 28.2 6.6 56 63-127 120-175 (193)
323 TIGR03504 FimV_Cterm FimV C-te 79.9 4 8.6E-05 22.2 3.3 26 98-124 4-29 (44)
324 COG5159 RPN6 26S proteasome re 79.7 29 0.00063 27.6 10.6 138 99-242 9-154 (421)
325 COG3947 Response regulator con 79.1 14 0.00029 29.5 7.1 62 18-79 280-341 (361)
326 KOG4567 GTPase-activating prot 79.0 18 0.00038 29.1 7.7 59 71-142 263-321 (370)
327 PF14689 SPOB_a: Sensor_kinase 78.9 7.4 0.00016 22.9 4.6 46 67-121 6-51 (62)
328 PF14689 SPOB_a: Sensor_kinase 78.9 3.7 8.1E-05 24.1 3.3 24 218-241 28-51 (62)
329 KOG1586 Protein required for f 78.6 28 0.00061 26.9 11.2 61 135-202 119-183 (288)
330 KOG4648 Uncharacterized conser 78.6 15 0.00033 29.9 7.4 54 59-121 105-159 (536)
331 PF08631 SPO22: Meiosis protei 78.5 31 0.00067 27.2 20.3 199 19-238 38-271 (278)
332 TIGR02561 HrpB1_HrpK type III 78.4 21 0.00046 25.3 10.0 50 29-80 22-73 (153)
333 cd00280 TRFH Telomeric Repeat 77.9 21 0.00046 26.3 7.4 65 33-107 85-157 (200)
334 PF11817 Foie-gras_1: Foie gra 77.1 20 0.00043 27.8 7.8 65 175-239 180-244 (247)
335 smart00028 TPR Tetratricopepti 76.9 5.9 0.00013 18.1 3.5 28 215-242 3-30 (34)
336 PF11817 Foie-gras_1: Foie gra 76.6 13 0.00028 28.8 6.7 27 215-241 180-206 (247)
337 PF08311 Mad3_BUB1_I: Mad3/BUB 75.8 23 0.00049 24.3 7.5 80 152-238 45-124 (126)
338 PF13762 MNE1: Mitochondrial s 75.4 26 0.00056 24.7 9.9 86 18-110 40-132 (145)
339 PF10255 Paf67: RNA polymerase 74.7 9.4 0.0002 31.9 5.6 67 174-240 123-191 (404)
340 PF10579 Rapsyn_N: Rapsyn N-te 74.5 13 0.00027 23.2 4.8 47 141-195 18-65 (80)
341 KOG1941 Acetylcholine receptor 74.1 50 0.0011 27.4 13.3 140 54-200 125-273 (518)
342 COG4649 Uncharacterized protei 74.1 32 0.0007 25.3 13.4 135 91-241 57-195 (221)
343 PRK15180 Vi polysaccharide bio 73.9 58 0.0013 28.1 10.1 118 105-241 301-419 (831)
344 PF11838 ERAP1_C: ERAP1-like C 73.8 45 0.00097 26.7 13.5 145 33-200 146-306 (324)
345 PF11848 DUF3368: Domain of un 73.1 13 0.00029 20.4 4.9 36 102-138 11-46 (48)
346 PF07163 Pex26: Pex26 protein; 73.0 45 0.00098 26.4 9.3 118 27-156 45-181 (309)
347 PF11663 Toxin_YhaV: Toxin wit 72.9 5.7 0.00012 27.5 3.3 32 63-103 107-138 (140)
348 COG5159 RPN6 26S proteasome re 71.0 46 0.00099 26.6 8.1 21 177-197 129-149 (421)
349 KOG4279 Serine/threonine prote 70.9 86 0.0019 28.8 12.8 118 4-131 185-322 (1226)
350 PRK10564 maltose regulon perip 70.5 11 0.00024 30.0 4.8 45 88-133 251-296 (303)
351 COG4649 Uncharacterized protei 70.4 40 0.00087 24.8 14.8 138 49-203 57-197 (221)
352 KOG4234 TPR repeat-containing 70.1 45 0.00097 25.2 8.3 89 59-162 103-197 (271)
353 COG1747 Uncharacterized N-term 70.1 74 0.0016 27.7 19.3 167 14-203 63-235 (711)
354 smart00386 HAT HAT (Half-A-TPR 70.1 11 0.00023 17.9 3.7 29 31-59 1-29 (33)
355 PF10475 DUF2450: Protein of u 70.0 23 0.00051 28.2 6.8 22 171-192 195-216 (291)
356 KOG2297 Predicted translation 68.5 62 0.0013 26.2 13.4 19 215-233 323-341 (412)
357 TIGR03581 EF_0839 conserved hy 68.4 13 0.00029 28.0 4.6 89 67-160 137-235 (236)
358 KOG1464 COP9 signalosome, subu 68.3 38 0.00082 26.8 7.2 145 87-242 20-174 (440)
359 PF10366 Vps39_1: Vacuolar sor 67.4 20 0.00043 23.8 5.0 28 174-201 40-67 (108)
360 COG5108 RPO41 Mitochondrial DN 66.7 68 0.0015 28.9 9.1 79 98-183 33-113 (1117)
361 PF11848 DUF3368: Domain of un 66.4 20 0.00043 19.7 4.8 40 55-102 7-46 (48)
362 PF07678 A2M_comp: A-macroglob 66.0 40 0.00086 26.1 7.2 78 90-171 129-230 (246)
363 PF12862 Apc5: Anaphase-promot 65.4 26 0.00057 22.4 5.2 58 184-241 9-69 (94)
364 TIGR02508 type_III_yscG type I 65.4 33 0.00072 22.6 5.4 62 24-98 46-107 (115)
365 KOG1258 mRNA processing protei 65.3 98 0.0021 27.3 19.1 87 29-121 91-179 (577)
366 PF09986 DUF2225: Uncharacteri 64.7 25 0.00054 26.7 5.7 23 181-203 173-195 (214)
367 smart00638 LPD_N Lipoprotein N 64.2 1E+02 0.0022 27.2 17.6 170 17-202 340-525 (574)
368 COG2178 Predicted RNA-binding 63.8 59 0.0013 24.3 7.4 117 4-121 14-149 (204)
369 cd08819 CARD_MDA5_2 Caspase ac 63.7 35 0.00077 21.7 6.9 67 152-234 21-87 (88)
370 KOG4507 Uncharacterized conser 63.7 33 0.00071 30.3 6.6 116 34-162 590-705 (886)
371 PF11663 Toxin_YhaV: Toxin wit 63.4 8.8 0.00019 26.6 2.7 33 104-139 106-138 (140)
372 KOG1586 Protein required for f 63.2 69 0.0015 24.9 11.0 19 140-162 165-183 (288)
373 PRK10564 maltose regulon perip 62.5 17 0.00037 29.0 4.5 46 47-99 252-298 (303)
374 COG2042 Uncharacterized conser 62.4 40 0.00087 24.3 5.9 69 168-243 110-178 (179)
375 PRK15180 Vi polysaccharide bio 61.8 1.1E+02 0.0023 26.6 9.1 117 30-162 302-420 (831)
376 PRK12357 glutaminase; Reviewed 61.5 46 0.001 27.0 6.8 17 225-241 303-319 (326)
377 COG0735 Fur Fe2+/Zn2+ uptake r 61.3 55 0.0012 23.0 6.7 62 4-66 8-70 (145)
378 PF06552 TOM20_plant: Plant sp 61.2 64 0.0014 23.8 7.7 108 33-162 7-136 (186)
379 PF13934 ELYS: Nuclear pore co 59.8 77 0.0017 24.2 10.6 103 96-224 79-183 (226)
380 PF10366 Vps39_1: Vacuolar sor 58.3 52 0.0011 21.8 7.5 25 216-240 42-66 (108)
381 PF06552 TOM20_plant: Plant sp 58.3 40 0.00086 24.8 5.4 96 14-125 22-138 (186)
382 KOG3364 Membrane protein invol 57.7 63 0.0014 22.6 6.1 70 170-243 29-101 (149)
383 KOG2396 HAT (Half-A-TPR) repea 57.6 1.3E+02 0.0028 26.2 12.3 108 41-162 449-559 (568)
384 PF14669 Asp_Glu_race_2: Putat 57.5 79 0.0017 23.7 14.7 63 176-238 135-206 (233)
385 PF14853 Fis1_TPR_C: Fis1 C-te 57.2 32 0.0007 19.4 4.0 34 99-135 7-40 (53)
386 COG0735 Fur Fe2+/Zn2+ uptake r 57.1 66 0.0014 22.6 8.1 66 114-190 7-72 (145)
387 PRK12356 glutaminase; Reviewed 57.0 49 0.0011 26.8 6.3 25 175-199 233-257 (319)
388 KOG4648 Uncharacterized conser 56.5 59 0.0013 26.7 6.6 86 25-128 105-197 (536)
389 PF10475 DUF2450: Protein of u 56.2 1E+02 0.0022 24.6 9.6 21 127-147 195-215 (291)
390 KOG2396 HAT (Half-A-TPR) repea 55.7 1.4E+02 0.003 26.0 11.6 85 34-128 88-172 (568)
391 cd07153 Fur_like Ferric uptake 55.0 54 0.0012 21.7 5.6 48 56-110 5-52 (116)
392 COG4785 NlpI Lipoprotein NlpI, 54.7 97 0.0021 23.8 11.8 28 174-201 238-265 (297)
393 KOG2066 Vacuolar assembly/sort 54.3 1.8E+02 0.0039 26.8 13.7 75 24-109 363-439 (846)
394 KOG0890 Protein kinase of the 54.2 1.9E+02 0.0041 30.4 10.6 122 56-200 1388-1510(2382)
395 cd07153 Fur_like Ferric uptake 54.2 55 0.0012 21.7 5.5 48 135-191 6-53 (116)
396 PF12862 Apc5: Anaphase-promot 53.9 55 0.0012 20.8 6.5 54 27-80 8-70 (94)
397 COG2909 MalT ATP-dependent tra 53.5 2E+02 0.0042 27.0 14.7 203 19-238 459-684 (894)
398 PRK02287 hypothetical protein; 53.2 42 0.00091 24.4 4.9 62 174-242 108-169 (171)
399 PF11838 ERAP1_C: ERAP1-like C 53.2 1.2E+02 0.0025 24.3 20.3 119 98-237 134-261 (324)
400 PF09986 DUF2225: Uncharacteri 52.7 1E+02 0.0022 23.4 7.4 29 216-244 168-196 (214)
401 cd00280 TRFH Telomeric Repeat 52.6 94 0.002 23.1 7.3 49 109-162 85-140 (200)
402 PF01475 FUR: Ferric uptake re 51.9 55 0.0012 21.9 5.2 48 55-109 11-58 (120)
403 PF09454 Vps23_core: Vps23 cor 51.8 50 0.0011 19.7 4.8 50 13-63 4-54 (65)
404 PRK10941 hypothetical protein; 51.8 1.2E+02 0.0026 24.0 10.6 79 95-184 183-262 (269)
405 KOG2908 26S proteasome regulat 51.5 1.4E+02 0.0029 24.6 9.3 82 18-106 76-169 (380)
406 KOG4234 TPR repeat-containing 51.5 1.1E+02 0.0023 23.3 9.1 95 24-130 102-202 (271)
407 KOG4642 Chaperone-dependent E3 51.4 1.2E+02 0.0025 23.8 10.8 123 61-200 20-144 (284)
408 PRK11639 zinc uptake transcrip 51.1 92 0.002 22.5 8.5 63 119-192 17-79 (169)
409 TIGR03581 EF_0839 conserved hy 51.0 78 0.0017 24.1 6.0 82 32-120 136-235 (236)
410 KOG4567 GTPase-activating prot 50.8 1E+02 0.0022 25.0 7.0 72 113-199 263-344 (370)
411 PF01475 FUR: Ferric uptake re 50.6 57 0.0012 21.8 5.1 49 134-191 12-60 (120)
412 PF04034 DUF367: Domain of unk 49.9 68 0.0015 22.0 5.2 61 173-240 66-126 (127)
413 PF10255 Paf67: RNA polymerase 49.1 1.2E+02 0.0025 25.7 7.5 63 95-161 124-192 (404)
414 PF02184 HAT: HAT (Half-A-TPR) 46.5 33 0.00072 17.2 2.5 24 108-134 2-25 (32)
415 COG2976 Uncharacterized protei 45.6 1.3E+02 0.0028 22.6 9.5 88 58-162 96-188 (207)
416 PF04090 RNA_pol_I_TF: RNA pol 44.4 1.3E+02 0.0029 22.5 10.2 28 131-162 43-70 (199)
417 KOG0890 Protein kinase of the 44.2 4.2E+02 0.0091 28.2 14.1 150 22-197 1388-1542(2382)
418 PF09797 NatB_MDM20: N-acetylt 44.1 1.6E+02 0.0035 24.3 7.8 56 68-132 200-255 (365)
419 PF07163 Pex26: Pex26 protein; 43.5 1.7E+02 0.0037 23.4 9.2 87 135-236 89-181 (309)
420 cd08812 CARD_RIG-I_like Caspas 43.5 61 0.0013 20.6 4.1 44 181-233 42-86 (88)
421 PF09477 Type_III_YscG: Bacter 43.3 99 0.0022 20.7 8.0 78 31-121 20-97 (116)
422 PF04124 Dor1: Dor1-like famil 42.3 1.5E+02 0.0034 24.2 7.3 41 95-135 108-148 (338)
423 KOG1524 WD40 repeat-containing 42.1 2.1E+02 0.0046 25.2 7.9 88 90-199 570-670 (737)
424 PF02847 MA3: MA3 domain; Int 41.6 78 0.0017 20.7 4.7 61 97-162 6-66 (113)
425 COG5108 RPO41 Mitochondrial DN 41.3 2.8E+02 0.0061 25.4 12.0 77 56-141 33-115 (1117)
426 PF09868 DUF2095: Uncharacteri 41.0 97 0.0021 20.9 4.7 26 56-81 66-91 (128)
427 PF07678 A2M_comp: A-macroglob 40.1 1.7E+02 0.0036 22.7 6.9 84 152-242 118-221 (246)
428 PRK09462 fur ferric uptake reg 39.6 1.3E+02 0.0029 21.0 8.0 62 118-190 7-69 (148)
429 KOG3154 Uncharacterized conser 39.4 60 0.0013 24.6 4.0 84 152-242 126-209 (263)
430 PF11123 DNA_Packaging_2: DNA 39.2 92 0.002 19.1 4.9 35 31-65 11-45 (82)
431 PF12816 Vps8: Golgi CORVET co 38.9 1.3E+02 0.0029 22.4 5.9 74 3-80 6-81 (196)
432 cd08789 CARD_IPS-1_RIG-I Caspa 38.8 1E+02 0.0022 19.4 5.4 50 175-234 34-83 (84)
433 PF11768 DUF3312: Protein of u 38.8 2.8E+02 0.006 24.5 11.6 60 21-80 412-473 (545)
434 PHA02875 ankyrin repeat protei 38.8 2.3E+02 0.005 23.6 10.8 17 182-198 174-190 (413)
435 PF02607 B12-binding_2: B12 bi 38.4 73 0.0016 19.3 3.9 40 62-108 12-51 (79)
436 TIGR01503 MthylAspMut_E methyl 38.3 19 0.0004 30.6 1.4 112 32-158 69-194 (480)
437 smart00804 TAP_C C-terminal do 38.3 31 0.00068 20.4 2.0 24 106-129 38-61 (63)
438 COG4003 Uncharacterized protei 37.9 64 0.0014 20.2 3.3 25 219-243 37-61 (98)
439 PF12238 MSA-2c: Merozoite sur 37.7 1.8E+02 0.0039 22.0 6.2 78 3-80 16-96 (205)
440 PF07575 Nucleopor_Nup85: Nup8 37.6 1.4E+02 0.003 26.5 6.7 77 71-161 390-466 (566)
441 COG4785 NlpI Lipoprotein NlpI, 37.5 1.9E+02 0.0042 22.3 15.6 168 47-241 94-265 (297)
442 PF12968 DUF3856: Domain of Un 37.4 1.4E+02 0.003 20.6 7.4 65 128-198 54-125 (144)
443 KOG2659 LisH motif-containing 37.3 1.9E+02 0.0041 22.2 8.2 101 13-121 22-131 (228)
444 COG2178 Predicted RNA-binding 37.3 1.8E+02 0.0038 21.8 9.0 101 132-241 32-149 (204)
445 PF07575 Nucleopor_Nup85: Nup8 36.9 1E+02 0.0022 27.3 5.8 91 20-121 375-466 (566)
446 PF13934 ELYS: Nuclear pore co 36.8 1.9E+02 0.0042 22.1 10.1 105 54-186 79-185 (226)
447 KOG1464 COP9 signalosome, subu 36.7 2.2E+02 0.0048 22.8 11.5 185 46-240 21-218 (440)
448 KOG3807 Predicted membrane pro 36.5 2.5E+02 0.0053 23.2 8.0 122 33-180 232-354 (556)
449 KOG2063 Vacuolar assembly/sort 36.3 3.8E+02 0.0083 25.4 12.9 27 19-45 506-532 (877)
450 PF12926 MOZART2: Mitotic-spin 36.3 1.2E+02 0.0025 19.4 7.7 64 92-162 9-72 (88)
451 KOG3364 Membrane protein invol 36.2 1.5E+02 0.0033 20.8 6.1 68 90-162 29-100 (149)
452 PF02259 FAT: FAT domain; Int 35.9 2.3E+02 0.005 22.8 20.2 67 129-201 146-212 (352)
453 PF03745 DUF309: Domain of unk 35.9 93 0.002 18.2 5.2 49 61-116 9-62 (62)
454 KOG0376 Serine-threonine phosp 35.2 78 0.0017 27.1 4.5 107 59-188 12-120 (476)
455 PTZ00131 glycophorin-binding p 35.2 2.1E+02 0.0046 22.2 14.0 196 21-242 166-405 (413)
456 PF08311 Mad3_BUB1_I: Mad3/BUB 35.2 1.5E+02 0.0032 20.3 8.7 43 111-158 81-124 (126)
457 KOG2659 LisH motif-containing 35.1 2.1E+02 0.0045 22.0 10.1 99 89-199 22-129 (228)
458 COG5187 RPN7 26S proteasome re 35.1 2.4E+02 0.0053 22.8 12.6 98 93-201 115-220 (412)
459 KOG2063 Vacuolar assembly/sort 34.3 4.1E+02 0.0089 25.2 10.8 121 53-187 506-640 (877)
460 PRK11639 zinc uptake transcrip 34.3 1.8E+02 0.0039 21.0 7.9 58 45-110 20-77 (169)
461 PRK11905 bifunctional proline 34.2 2.5E+02 0.0055 27.7 8.2 49 96-147 68-116 (1208)
462 PRK11904 bifunctional proline 34.1 2.2E+02 0.0047 27.6 7.7 71 95-182 66-136 (1038)
463 PRK07003 DNA polymerase III su 33.8 4E+02 0.0088 25.0 9.4 89 146-245 181-277 (830)
464 COG2909 MalT ATP-dependent tra 33.5 4.2E+02 0.009 25.0 18.2 204 28-242 426-647 (894)
465 PHA02875 ankyrin repeat protei 33.2 2.9E+02 0.0062 23.1 9.0 21 178-198 204-224 (413)
466 KOG3036 Protein involved in ce 32.0 2.3E+02 0.0051 22.2 6.2 58 138-203 205-262 (293)
467 PF04034 DUF367: Domain of unk 31.2 1.8E+02 0.0039 20.1 7.7 59 51-119 66-125 (127)
468 PF04097 Nic96: Nup93/Nic96; 31.1 4E+02 0.0087 24.0 9.8 88 59-162 266-356 (613)
469 KOG2062 26S proteasome regulat 30.4 2.5E+02 0.0053 26.0 6.8 126 102-242 510-635 (929)
470 KOG4814 Uncharacterized conser 30.3 4.3E+02 0.0093 24.1 8.1 87 27-121 364-456 (872)
471 cd08315 Death_TRAILR_DR4_DR5 D 30.3 99 0.0021 20.0 3.6 30 215-244 66-95 (96)
472 cd00245 Glm_e Coenzyme B12-dep 30.2 1.3E+02 0.0029 25.5 5.1 159 31-203 25-197 (428)
473 PF09797 NatB_MDM20: N-acetylt 29.6 3.2E+02 0.007 22.5 9.8 71 22-99 185-258 (365)
474 PF04124 Dor1: Dor1-like famil 29.4 3.2E+02 0.0069 22.4 8.6 26 54-79 109-134 (338)
475 PF08424 NRDE-2: NRDE-2, neces 29.2 3.1E+02 0.0068 22.2 14.9 138 14-163 16-184 (321)
476 PF10345 Cohesin_load: Cohesin 29.0 4.3E+02 0.0093 23.7 17.3 185 2-199 41-251 (608)
477 COG2405 Predicted nucleic acid 28.8 1.7E+02 0.0036 20.7 4.5 43 53-103 112-154 (157)
478 PRK09687 putative lyase; Provi 28.0 3.1E+02 0.0067 21.8 21.7 59 171-241 204-262 (280)
479 KOG3677 RNA polymerase I-assoc 27.9 1.9E+02 0.004 24.7 5.4 64 174-240 236-299 (525)
480 KOG1166 Mitotic checkpoint ser 27.9 2.6E+02 0.0057 26.8 6.9 72 104-185 89-161 (974)
481 cd08819 CARD_MDA5_2 Caspase ac 27.8 1.7E+02 0.0037 18.7 6.5 67 112-194 21-87 (88)
482 PF07899 Frigida: Frigida-like 27.7 3.2E+02 0.007 21.9 7.2 21 169-189 126-146 (290)
483 PRK09687 putative lyase; Provi 27.3 3.2E+02 0.0069 21.7 23.3 131 10-161 30-169 (280)
484 KOG0292 Vesicle coat complex C 27.0 1.8E+02 0.0039 27.4 5.5 128 56-238 625-752 (1202)
485 PF14561 TPR_20: Tetratricopep 26.8 1.7E+02 0.0038 18.5 7.3 59 171-233 20-78 (90)
486 PF05664 DUF810: Protein of un 26.0 4.1E+02 0.0088 24.4 7.6 66 12-77 212-289 (677)
487 PF08870 DUF1832: Domain of un 25.8 2.1E+02 0.0046 19.2 6.4 88 34-143 6-96 (113)
488 KOG2223 Uncharacterized conser 25.7 4.3E+02 0.0093 22.7 7.1 44 114-162 460-503 (586)
489 PF09670 Cas_Cas02710: CRISPR- 25.4 4E+02 0.0088 22.3 12.5 55 102-162 140-198 (379)
490 PRK11905 bifunctional proline 25.3 3.9E+02 0.0086 26.5 7.8 144 34-203 50-199 (1208)
491 PF14649 Spatacsin_C: Spatacsi 24.6 3.1E+02 0.0066 22.1 6.0 68 91-162 18-88 (296)
492 PRK10292 hypothetical protein; 24.5 1.6E+02 0.0035 17.4 5.5 47 31-77 2-60 (69)
493 KOG0275 Conserved WD40 repeat- 24.4 4E+02 0.0086 21.8 7.7 87 134-238 12-99 (508)
494 KOG4507 Uncharacterized conser 24.3 5.4E+02 0.012 23.3 8.8 96 30-137 620-718 (886)
495 PRK09462 fur ferric uptake reg 23.8 2.6E+02 0.0057 19.5 6.9 58 88-147 12-70 (148)
496 TIGR03184 DNA_S_dndE DNA sulfu 23.7 2.3E+02 0.0049 18.8 6.4 89 34-143 5-98 (105)
497 PF13646 HEAT_2: HEAT repeats; 23.6 1.8E+02 0.0039 17.6 8.8 64 13-80 10-73 (88)
498 PF15469 Sec5: Exocyst complex 23.2 2.9E+02 0.0064 20.0 5.5 57 95-162 59-115 (182)
499 PF08424 NRDE-2: NRDE-2, neces 23.1 4.1E+02 0.0089 21.5 16.1 140 90-242 16-183 (321)
500 PRK11809 putA trifunctional tr 23.0 5.2E+02 0.011 26.0 8.1 129 96-244 148-280 (1318)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.1e-40 Score=291.18 Aligned_cols=141 Identities=21% Similarity=0.202 Sum_probs=66.8
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
++.|+..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++ |.++|+.|.+.
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~ee----A~~l~~eM~k~----- 678 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDK----AFEILQDARKQ----- 678 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHc-----
Confidence 3444444444444444444444444444444444 4444444444444444444444444 44444444444
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
|+.||..+|++||.+|++.|++++|.++|++|...+ +.|+.. +|++||.+|++.|++++|.++|++|.+.|
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g---~~Pdvv--tyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK---LRPTVS--TMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 445555555555555555555555555555554322 222222 55555555555555555555555555544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.8e-40 Score=290.95 Aligned_cols=221 Identities=19% Similarity=0.242 Sum_probs=143.7
Q ss_pred hhhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcc
Q 043380 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81 (246)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 81 (246)
+.+++|.+.|+.||..+||++|.+|++.|++++|.++|+.|. .|+.||..||++||.+|++.|++++|.++|++|...+
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 456666666666677777777777777777777777776665 5666666666666666666666666666666665421
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 82 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
.++.||..+|++||.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|.+|++.|++++ |.++|++|.+
T Consensus 573 -----~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~de----Al~lf~eM~~ 642 (1060)
T PLN03218 573 -----HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDF----ALSIYDDMKK 642 (1060)
T ss_pred -----CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Confidence 15566666666666666666666666666666666 6666666666666666666666666 6666666666
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 162 RVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 162 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
. |+.||..+|+++|.+|++.|++++|.++|++|.+.+ +.|+.. +|++||.+|++.|++++|.++|++|.+
T Consensus 643 ~-----Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G---~~pd~~--tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 643 K-----GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG---IKLGTV--SYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred c-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6 666666666666666666666666666666665443 333322 666666666666666666666666655
Q ss_pred hc
Q 043380 242 RW 243 (246)
Q Consensus 242 ~g 243 (246)
.|
T Consensus 713 ~g 714 (1060)
T PLN03218 713 IK 714 (1060)
T ss_pred cC
Confidence 43
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7e-37 Score=268.02 Aligned_cols=202 Identities=14% Similarity=0.183 Sum_probs=123.5
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 91 (246)
.++|+.+||++|.+|++.|++++|.++|++|. .|+.||..||++++.+|++.|++++|.+++.+|.+. |+.|
T Consensus 286 ~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~ 358 (697)
T PLN03081 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPL 358 (697)
T ss_pred CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCC
Confidence 45566666666666666666666666666665 566666666666666666666666666666666666 5555
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
|..+|++|+.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++ |.++|++|.+. |+.|
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~----A~~lf~~M~~~-----g~~P 424 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNHGRGTK----AVEMFERMIAE-----GVAP 424 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHcCCHHH----HHHHHHHHHHh-----CCCC
Confidence 555555555555555555555555555544 455566666666666666666 66666666655 6666
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
|..||++++.+|++.|++++|.++|+.|.+.. + +.|+.. +|+.|+++|++.|++++|.+++++|
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-g-~~p~~~--~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH-R-IKPRAM--HYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-C-CCCCcc--chHhHHHHHHhcCCHHHHHHHHHHC
Confidence 66666666666666666666666666664321 1 233322 5666666666666666666665554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-36 Score=262.67 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=166.1
Q ss_pred hhhhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
++.+++|.+.|+.||..||++++.+|++.|++++|.++++.|. .|+.||..+||+||++|++.|++++|.++|++|.+
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~- 388 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR- 388 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-
Confidence 3567788888888888888888888888888888888888876 67788888888888888888888888888887753
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHH
Q 043380 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160 (246)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~ 160 (246)
||..+||+||.+|++.|+.++|.++|++|.+ .|+.||..||++++.+|++.|.+++ |.++|+.|.
T Consensus 389 ----------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~----a~~~f~~m~ 453 (697)
T PLN03081 389 ----------KNLISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQ----GWEIFQSMS 453 (697)
T ss_pred ----------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHH----HHHHHHHHH
Confidence 6777888888888888888888888888877 7788888888888888888888888 888888886
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCC----------------------------CCCCchhh
Q 043380 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST----------------------------GTISPEVQ 212 (246)
Q Consensus 161 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------------------------~~~~~~~~ 212 (246)
+.. |+.|+..+|++|+++|++.|++++|.+++++|..... +..+...
T Consensus 454 ~~~----g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~- 528 (697)
T PLN03081 454 ENH----RIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL- 528 (697)
T ss_pred Hhc----CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC-
Confidence 532 6677777777777777777777777777666531100 0011111
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 213 EEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.+|..|+..|++.|++++|.++++.|+++|.
T Consensus 529 -~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 529 -NNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred -cchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 2688888888888888888888888888773
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-34 Score=259.45 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=69.3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
||+.+||++|.+|++.|++++|+++|++|. .|+.||..||+.+|.+|++.|+.+.|.+++..|.+. |+.||.
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~d~ 323 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-------GFAVDV 323 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-------CCccch
Confidence 333333333333333333444444443333 333444444444444444444444444444443333 344444
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.+||+|+.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++ |+++|++|.+. |+.||.
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~----A~~lf~~M~~~-----g~~Pd~ 389 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDK----ALETYALMEQD-----NVSPDE 389 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHH----HHHHHHHHHHh-----CCCCCc
Confidence 4444444444444444444444444432 333344444444444444444 44444444443 444444
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
.||+.++.+|++.|++++|.++++.+.
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-34 Score=257.35 Aligned_cols=200 Identities=17% Similarity=0.238 Sum_probs=137.2
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHH-----------------------------------HHH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSY-----------------------------------NIL 57 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~-----------------------------------~~l 57 (246)
+||+.+||++|.+|++.|++++|+++|++|. .|+.||..|| |+|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 4455555555555555555555555555554 3444444444 444
Q ss_pred HHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 043380 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137 (246)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 137 (246)
|.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+ .|+.||..||+.+|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~-----------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP-----------RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVIS 296 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHH
Confidence 444444555555555555443 36667777777777777777777778888877 778888888888888
Q ss_pred HHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHH
Q 043380 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGH 217 (246)
Q Consensus 138 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (246)
+|++.|+++. |.+++..|.+. |+.||..+|++||.+|++.|++++|.++|++|...+ . .+|+
T Consensus 297 a~~~~g~~~~----a~~l~~~~~~~-----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-------~--~s~n 358 (857)
T PLN03077 297 ACELLGDERL----GREMHGYVVKT-----GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD-------A--VSWT 358 (857)
T ss_pred HHHhcCChHH----HHHHHHHHHHh-----CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------e--eeHH
Confidence 8888888887 88888888777 788888888888888888888888888888875432 1 1688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 218 LLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 218 ~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
++|.+|++.|++++|.++|++|.+.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888887665
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.73 E-value=4e-15 Score=122.69 Aligned_cols=199 Identities=13% Similarity=0.035 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----H
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD----I 93 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~ 93 (246)
..+..+...|.+.|++++|+.+|+++.+..+++..+++.++..+.+.|++++|.+.++.+.+. +..++ .
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~ 180 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-------GGDSLRVEIA 180 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-------cCCcchHHHH
Confidence 345556666666666666666666655333445556666666666666666666666666554 11111 1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
..|..+...+...|++++|...|+++.+ ..|+ ...+..+...+...|++++ |.++|+++... +-.+.
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~-----~p~~~ 248 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALA---ADPQCVRASILLGDLALAQGDYAA----AIEALERVEEQ-----DPEYL 248 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh---HCcCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHH-----ChhhH
Confidence 2344455555666666666666666655 2233 4455556666666666666 66666666554 11111
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..++..+..+|...|++++|...++++....+ +.. .+..+...+.+.|++++|.++++++.+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~~--~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEYP-----GAD--LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cch--HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34556666666666666666666666554321 111 3455666666666666666666665544
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.71 E-value=1e-14 Score=120.29 Aligned_cols=202 Identities=12% Similarity=0.095 Sum_probs=165.1
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD-----SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 87 (246)
.+++..+++.++..+.+.|++++|.+.++.+.+..+.+ ...+..+...+.+.|++++|...|+++.+.
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 209 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA------- 209 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-------
Confidence 34578899999999999999999999999986322221 224566777888999999999999999875
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD--RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (246)
.+.+...+..+...+.+.|++++|.++|+++.. . .|+ ..+++.++.+|...|++++ |...++.+.+.
T Consensus 210 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~p~~~~~~~~~l~~~~~~~g~~~~----A~~~l~~~~~~--- 278 (389)
T PRK11788 210 -DPQCVRASILLGDLALAQGDYAAAIEALERVEE-Q--DPEYLSEVLPKLMECYQALGDEAE----GLEFLRRALEE--- 278 (389)
T ss_pred -CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H--ChhhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh---
Confidence 233466888899999999999999999999998 3 344 4678899999999999999 99999999875
Q ss_pred CCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh---cCChhHHHHHHHHHHhh
Q 043380 166 NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN---DGQVDLALDKLSNTITR 242 (246)
Q Consensus 166 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 242 (246)
.|+...+..+...+.+.|++++|..+++++.... |... +++.++..+.. .|+.+++..++++|.++
T Consensus 279 ----~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~----P~~~---~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 ----YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH----PSLR---GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred ----CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----cCHH---HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 4677777899999999999999999999887542 2222 67777777664 56899999999999876
Q ss_pred c
Q 043380 243 W 243 (246)
Q Consensus 243 g 243 (246)
+
T Consensus 348 ~ 348 (389)
T PRK11788 348 Q 348 (389)
T ss_pred H
Confidence 5
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3.7e-14 Score=112.24 Aligned_cols=213 Identities=14% Similarity=0.145 Sum_probs=165.8
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 91 (246)
.+.+..+|.++|.+.|+-...++|.+++++.. ...+.+..+||.+|.+-+-.. ..++..+|... .+.|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-------km~P 271 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-------KMTP 271 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh-------hcCC
Confidence 67888999999999999999999999999987 566899999999998765433 37899999998 8999
Q ss_pred cHHHHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhh-c--
Q 043380 92 DIFTYATLLMGFRHAKDLQS----LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV-C-- 164 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~-~-- 164 (246)
|..|||+++++.++.|+++. |.+++-+|++ -|+.|...+|+.+|..+++.++..++ |..++.++...- +
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~---as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKV---ASSWINDIQNSLTGKT 347 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhh---hHHHHHHHHHhhccCc
Confidence 99999999999999998865 5678899999 99999999999999999999888663 666666665541 1
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCC-CCCCCCCchhhhHHH-HHHHHHHHhcCChhHHHHHHHHHH
Q 043380 165 SNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP-DSTGTISPEVQEEAG-HLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 165 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
..|...-|..-|..-++.|.+..+.+.|.++..-+.. ++...+++......| ..+..+.+.....+....+|+.|.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1222223446678889999999999999999887763 444556666433333 335555556666666666666554
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.65 E-value=8.7e-14 Score=125.49 Aligned_cols=204 Identities=13% Similarity=0.036 Sum_probs=118.7
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.+...|..+..+|.+.|++++|...|+.+....+.+...+..+..++...|++++|..+|+++.+. .+.+.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~ 669 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNT 669 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCH
Confidence 3445555555555555566666665555554322334455555555555556666666666555543 12334
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.++..+...+...|++++|.++++.+.+ .+ .++...+..+...+...|++++ |...|+.+... .|+.
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~----A~~~~~~~~~~-------~~~~ 736 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQK-QH-PKAALGFELEGDLYLRQKDYPA----AIQAYRKALKR-------APSS 736 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-cCChHHHHHHHHHHHHCCCHHH----HHHHHHHHHhh-------CCCc
Confidence 5566666666666666666666666655 22 2335555566666666666666 66666666554 3444
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.++..+..++.+.|++++|.+.++.+....+. +. .++..+...|...|++++|.++|+++.+..+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~----~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN----DA--VLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CH--HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 56666666677777777777766666544321 11 1566677777777777777777777765543
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.64 E-value=1.7e-13 Score=123.65 Aligned_cols=131 Identities=14% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
..++..+...+...|++++|.++++.+....+++...+..+...+...|++++|.+.|.++... .|+..++
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ 739 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---------APSSQNA 739 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---------CCCchHH
Confidence 4444455555555555555555555544323344445555555555555555555555555543 2333444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..+..++.+.|++++|.+.++.+.+ . .+.+...++.+...|...|++++ |...|+++.+.
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~-~-~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~ 799 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLK-T-HPNDAVLRTALAELYLAQKDYDK----AIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCcCHHH----HHHHHHHHHHh
Confidence 4455555555555555555555544 1 12234455555555555555555 55555555543
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.59 E-value=4e-15 Score=85.33 Aligned_cols=49 Identities=31% Similarity=0.613 Sum_probs=47.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHh
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~ 63 (246)
||+.+||++|++|++.|++++|.++|++|. +|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999998 8999999999999999985
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.58 E-value=7e-15 Score=84.29 Aligned_cols=50 Identities=30% Similarity=0.531 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 141 (246)
||..+||++|.+|++.|++++|.++|++|.+ .|+.||..||+++|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999 9999999999999999985
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=6.4e-12 Score=95.58 Aligned_cols=204 Identities=11% Similarity=-0.042 Sum_probs=167.2
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
......+..+...+...|++++|.+.+++.....+.+...+..+...+...|++++|.+.+++..+. .+.+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 99 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNG 99 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCH
Confidence 3446778889999999999999999999876444556788889999999999999999999999885 24456
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
..+..+...+...|++++|...+++... ....| ....+..+...+...|++++ |...+++..+. ...+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~------~~~~ 168 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDK----AEKYLTRALQI------DPQR 168 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CcCC
Confidence 7888889999999999999999999987 43223 35667788889999999999 99999998875 2334
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
...+..+...+...|++++|...+++..... +... ..+..+...+...|+.++|..+.+.+...
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTY----NQTA--ESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5678889999999999999999999987542 1111 15667888899999999999998887654
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.48 E-value=4e-11 Score=104.59 Aligned_cols=205 Identities=13% Similarity=0.013 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
...|..+...+...|++++|...|+....-.+.+...|..+...+...|++++|...|++..+. .+.+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~ 436 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSH 436 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHH
Confidence 4566677777777788888888887765333455677788888888888888888888888775 23345677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-h
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-H 174 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~ 174 (246)
..+...+.+.|++++|+..|++... ..|+ ...|+.+...+...|++++ |.+.|+..........+..++. .
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~----A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDE----AIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHH----HHHHHHHHHhcCCccccccccHHH
Confidence 7788888888999999999988877 3455 7788888899999999999 9999999877511000111111 1
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
.++.....+...|++++|..++++....++.. . .++..+...+...|++++|.++|++..+-
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~---~---~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPEC---D---IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---H---HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222333445799999999999976543211 1 16888999999999999999999887654
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.47 E-value=5.2e-11 Score=104.14 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 93 IFTYATLLMGFRHAKDLQS----LLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
...+..+-..+...|++++ |...|++... ..|+ ...+..+...+...|++++ |...+++..+.
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~e----A~~~l~~al~l----- 313 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEK----AIPLLQQSLAT----- 313 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHh-----
Confidence 3344444455555555543 4555555544 3344 4455555555555555555 55555555543
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
-..+...+..+..++...|++++|...++.+...++.. .. .+..+..++...|+.++|.+.|++..+.
T Consensus 314 -~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~----~~--~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 314 -HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT----SK--WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----hH--HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11123444555555666666666666666554332211 00 2233344555666666666666655544
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.47 E-value=4.8e-11 Score=104.37 Aligned_cols=132 Identities=11% Similarity=-0.019 Sum_probs=72.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
..+..++...|++++|...++.... ..|+ ...+..+...+...|++++-...|...|+...+. -+.+..+
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l------~P~~~~a 286 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF------NSDNVRI 286 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh------CCCCHHH
Confidence 3334445555555555555555554 2233 4445555556666666552000045555555543 1223456
Q ss_pred HHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 176 YVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
+..+...+...|++++|...+++.....+. .+ .++..+..++...|++++|.+.|+++....
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPD--LP----YVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 666666777777777777777766543221 11 145556667777777777777777666543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=1.3e-10 Score=101.33 Aligned_cols=208 Identities=12% Similarity=-0.094 Sum_probs=163.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
.+...|+.+...+...|++++|+..|+......+.+...|..+...+...|++++|...|++..+. -+.+..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~ 400 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPD 400 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 345678888889999999999999999876433445678889999999999999999999999875 234577
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.|..+...+...|++++|...|+...+ +.|+ ...+..+...+.+.|++++ |...|+...+. .+-+.
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~------~P~~~ 467 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYKEGSIAS----SMATFRRCKKN------FPEAP 467 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHh------CCCCh
Confidence 899999999999999999999999988 5566 7778889999999999999 99999998875 33346
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhh-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQ-EEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
..++.+..++...|++++|.+.|+......+...+.... ...++.....+...|++++|.+++++.....
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 788999999999999999999999976543321111110 0022223334445799999999999876543
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=1.1e-12 Score=103.39 Aligned_cols=199 Identities=14% Similarity=0.050 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
++..+..++.. ...+++++|.++++...+. .++...+..++..+.+.++++++.++++.+.... ..+++...
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~ 148 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP------AAPDSARF 148 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------T-HHH
T ss_pred ccccccccccc-ccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------CCCCCHHH
Confidence 44455566665 5677777777777655321 3555666777777777777888777777766541 33456667
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
|..+...+.+.|+.++|...+++..+ ..|+ ....+.++..+...|+.++ +.++++...+. ...|+.
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~----~~~~l~~~~~~------~~~~~~ 215 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDE----AREALKRLLKA------APDDPD 215 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHH----HHHHHHHHHHH-------HTSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHH----HHHHHHHHHHH------CcCHHH
Confidence 77777777788888888888887777 5565 5667777777777788777 77777777765 244556
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+..+..+|...|+.++|...|++....++ .++. ....+.+++...|+.++|.++.++...
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p----~d~~--~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNP----DDPL--WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHST----T-HH--HHHHHHHHHT-----------------
T ss_pred HHHHHHHHhccccccccccccccccccccc----cccc--ccccccccccccccccccccccccccc
Confidence 667777777888888888888887665332 1221 456677777788888888877766543
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.5e-10 Score=92.24 Aligned_cols=174 Identities=16% Similarity=0.111 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
+.+..||.+||.+.|+-...+.|.++|++.... ..+.+..+||.+|.+-+-.-+ .++..+|.. ..++|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-------k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis-qkm~P 271 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAA-------KGKVYREAFNGLIGASSYSVG----KKLVAEMIS-QKMTP 271 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-------hheeeHHhhhhhhhHHHhhcc----HHHHHHHHH-hhcCC
Confidence 557789999999999999999999999999987 678999999999988654333 788999999 88999
Q ss_pred CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH-HhhHHHhhC----CC
Q 043380 128 DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI-VKSPYRRMW----PD 202 (246)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~----~~ 202 (246)
|..|||+++.+.++.|+++.-.-.|.+++.+|++- |+.|...+|..+|..+++.++..+ +..++.++. ..
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKei-----GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI-----GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh-----CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 99999999999999998887333478899999999 999999999999999999999854 444444433 22
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 203 STGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
....+.|.- ..-|...+..|.+..+..-|.++..-+
T Consensus 347 ~fkp~~p~d-~~FF~~AM~Ic~~l~d~~LA~~v~~ll 382 (625)
T KOG4422|consen 347 TFKPITPTD-NKFFQSAMSICSSLRDLELAYQVHGLL 382 (625)
T ss_pred cccCCCCch-hHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 111122221 224677788888888888888876544
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=3.7e-12 Score=100.42 Aligned_cols=202 Identities=15% Similarity=0.148 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
|+..|..+...+-..++.+.|.+.++++...-+-+...+..++.. ...+++++|.+++.+..+. .++...
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~---------~~~~~~ 112 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER---------DGDPRY 112 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc---------ccccch
Confidence 444444445555566777888888777653223345556666666 6777788888877766554 366777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPH 174 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~ 174 (246)
+..++..+.+.++++++.++++.........++...|..+...+.+.|+.++ |.+++++..+. .| |..
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~----A~~~~~~al~~-------~P~~~~ 181 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK----ALRDYRKALEL-------DPDDPD 181 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH----HHHHHHHHHHH--------TT-HH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc-------CCCCHH
Confidence 8889999999999999999999987634445678888899999999999999 99999999886 45 467
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
....++..+...|+.+++..++.......+ ..|. .+..+..+|...|+.++|..+|++..+..+
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~~----~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAP--DDPD----LWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSCC----HCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHHH----HHHHHHHHhccccccccccccccccccccc
Confidence 888999999999999998888888765431 1122 578899999999999999999999887554
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.37 E-value=5.8e-10 Score=100.64 Aligned_cols=202 Identities=8% Similarity=-0.060 Sum_probs=149.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
.|+......+...+...|++++|...|+.+... +|+...+..+..++.+.|++++|..++++..+. . +++.
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-------~-P~~~ 576 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-------G-LGDN 576 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------C-CccH
Confidence 355443333344445788888888888877532 455556667777788888999999999888875 2 2233
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
..+..+.....+.|++++|...+++..+ +.|+...|..+...+.+.|++++ |...+++.... -+-+.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de----A~~~l~~AL~l------~Pd~~ 643 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA----AVSDLRAALEL------EPNNS 643 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHh------CCCCH
Confidence 3344444455566999999999999888 56788888888999999999999 99999998875 22344
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
..+..+-.++...|+.++|...+++.....+.. . .++..+..++...|++++|+..+++..+..
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~----~--~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDD----P--ALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----H--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 677778888999999999999999887654322 1 168889999999999999999998876543
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=2e-09 Score=92.70 Aligned_cols=181 Identities=13% Similarity=0.020 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCH
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDL 109 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~ 109 (246)
++.++|...+++...--+.+...+..+-..+...|++++|...|++..+. .| +...+..+-..+...|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCH
Confidence 34678888887765433556677777777777888888888888888875 34 355677777778888888
Q ss_pred HHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhHHHHHHHHHhcC
Q 043380 110 QSLLEIVFEMKSCCNLILDR-STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLYVSMMHELAARV 187 (246)
Q Consensus 110 ~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~li~~~~~~g 187 (246)
++|...+++..+ +.|+. ..+..++..+...|++++ |...+++.... ..|+ ...+..+..++...|
T Consensus 389 ~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~ee----A~~~~~~~l~~------~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 389 EEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDD----AIRLGDELRSQ------HLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHH----HHHHHHHHHHh------ccccCHHHHHHHHHHHHhCC
Confidence 888888888877 44552 233334445666778888 88888887664 2343 344566677777888
Q ss_pred ChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 188 DYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+.++|...+.++....+. .. ...+.+...|...| ++|...++.+.+
T Consensus 456 ~~~eA~~~~~~~~~~~~~----~~--~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 456 KHELARKLTKEISTQEIT----GL--IAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred CHHHHHHHHHHhhhccch----hH--HHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 888888888877544321 11 14555666666666 467766666554
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.29 E-value=1.4e-10 Score=96.27 Aligned_cols=162 Identities=12% Similarity=0.127 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD- 128 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~- 128 (246)
...||.|-+++-..|+..+|...|.+.... .|+ ...-+.|-+.|...|.+++|..+|....+ +.|.
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~ 387 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEF 387 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhh
Confidence 344555555555555555555555555543 222 23445555555555555555555555554 4455
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCC
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (246)
...+|.|...|-..|++++ |+..+++... +.|+. .+|+.+-..|-..|+++.|...+.+....++..
T Consensus 388 aaa~nNLa~i~kqqgnl~~----Ai~~Ykealr-------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~- 455 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDD----AIMCYKEALR-------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF- 455 (966)
T ss_pred hhhhhhHHHHHHhcccHHH----HHHHHHHHHh-------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-
Confidence 4455555555555555555 5555555543 34543 555666666666666666666666554332211
Q ss_pred CchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 208 SPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
..+++.|...|-.+|++.+|++-++...+
T Consensus 456 -----AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 456 -----AEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred -----HHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 12556666666666666666666665544
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=3.8e-09 Score=95.46 Aligned_cols=198 Identities=13% Similarity=0.024 Sum_probs=153.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+|+...+..+..++.+.|++++|...|+...+..+++...+..+.......|++++|...+++..+. .|+.
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------~P~~ 609 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---------APSA 609 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCCH
Confidence 4555566777888999999999999999886433344444444444555669999999999999986 6788
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
..|..+..++.+.|++++|...+++... ..|+ ...++.+...+...|++++ |+..++...+. -+-+
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~ee----Ai~~l~~AL~l------~P~~ 676 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQ----SREMLERAHKG------LPDD 676 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHh------CCCC
Confidence 8999999999999999999999999998 5677 6778888899999999999 99999999885 2335
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
...+..+..++...|++++|...+++.....+.... +.-..-....+..+++.|.+-+++-
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~------i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL------ITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch------hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998765432211 2233444455556666666655543
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=4.3e-09 Score=79.92 Aligned_cols=168 Identities=8% Similarity=-0.053 Sum_probs=139.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.+...+..+...+...|++++|.+.|++.....+.+...+..+...+...|++++|.+.+.+..... ......
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ 135 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPA 135 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccch
Confidence 44577888899999999999999999998764445667788889999999999999999999998751 122345
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
..+..+..++...|++++|...+++... ..|+ ...+..+...+...|++++ |...+++.... ...+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~~~------~~~~ 202 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKD----ARAYLERYQQT------YNQT 202 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CCCC
Confidence 5777788889999999999999999988 3344 6678889999999999999 99999998875 2345
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
...+..+...+...|+.++|..+.+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 203 AESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777788889999999999999988765
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.24 E-value=3.7e-10 Score=93.76 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHH
Q 043380 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYAT 98 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ 98 (246)
|-.|-+.|-..+.+++|..-|.+...--+.....+..|-..|-..|.+|.|...|++.++. .|+ ...|+.
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---------~P~F~~Ay~N 325 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---------QPNFPDAYNN 325 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc---------CCCchHHHhH
Confidence 3334444444444444444443332111222333444444444455555555555555543 343 335666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhH
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLY 176 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~ 176 (246)
|..++-..|+..+|.+.|+.... +.|+ ..+.+.|...|...|.+++ |.++|.....- .|. ....
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~----A~~ly~~al~v-------~p~~aaa~ 391 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEE----ATRLYLKALEV-------FPEFAAAH 391 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchH----HHHHHHHHHhh-------Chhhhhhh
Confidence 66666666666666666666555 3444 4555556666666666666 66666555442 333 2455
Q ss_pred HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 177 VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+.|...|-.+|+.++|...+++...- .|.. ..+|+.+-..|-..|+++.|.+.+.+-..
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI-----~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRI-----KPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhc-----CchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 66666666666666666666665432 2221 11466666666666666666666655443
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.22 E-value=1.1e-08 Score=95.34 Aligned_cols=210 Identities=10% Similarity=0.035 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCC------------
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQK------------ 83 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------ 83 (246)
++..+..+...|.+.|++++|...|+.+.+..+.+...+..+...+...++.++|...++.+......
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 45566677778888888888888887765322334444433333344455555555555443211000
Q ss_pred ---------------------CCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHh
Q 043380 84 ---------------------CSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLY 141 (246)
Q Consensus 84 ---------------------~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 141 (246)
+.. ..+++...+..+...+.+.|++++|...|+...+ ..|+ ...+..+...|..
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIA 649 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 000 0123444566777778888888899888888887 3455 7778888888888
Q ss_pred cCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchh-hhHHHHHH
Q 043380 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV-QEEAGHLL 219 (246)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l 219 (246)
.|++++ |.+.++...+. .| +..++..+..++...|++++|.++++.+...... .++.. ....+..+
T Consensus 650 ~g~~~e----A~~~l~~ll~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~-~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 650 QGDLAA----ARAQLAKLPAT-------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS-QPPSMESALVLRDA 717 (1157)
T ss_pred CCCHHH----HHHHHHHHhcc-------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc-CCcchhhHHHHHHH
Confidence 999999 99888877653 33 3456667778888889999999999987654321 11210 11145556
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 043380 220 MEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 220 i~~~~~~g~~~~a~~~~~~m~~ 241 (246)
...+...|++++|.+.|+....
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888999999999887753
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1.6e-08 Score=80.29 Aligned_cols=200 Identities=9% Similarity=-0.079 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFT 95 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~ 95 (246)
...|..+-..|.+.|+.++|...|++..+.-+.+...|+.+-..+...|++++|.+.|++..+. .|+ ..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a 134 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---------DPTYNYA 134 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHH
Confidence 4567788888999999999999998876544667899999999999999999999999999975 454 668
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
|..+..++...|++++|.+.|+.... ..|+..........+...++.++ |...|...... ..|+...
T Consensus 135 ~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~----A~~~l~~~~~~------~~~~~~~ 201 (296)
T PRK11189 135 YLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQ----AKENLKQRYEK------LDKEQWG 201 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHH----HHHHHHHHHhh------CCccccH
Confidence 88888899999999999999999988 45664322223333455678999 99999776543 3333322
Q ss_pred HHHHHHHHHhcCChhHHhhHHHhhCCCCCC--CCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 176 YVSMMHELAARVDYDIVKSPYRRMWPDSTG--TISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
+ .+ .....|+...+ ..+..+...... ...|. ...+|..+...+...|++++|...|++..+..
T Consensus 202 ~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 202 W-NI--VEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 22 23345666554 344444321110 11111 12378999999999999999999999887644
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.19 E-value=1.3e-08 Score=94.90 Aligned_cols=199 Identities=9% Similarity=-0.019 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
.+..+...+...|++++|.+.|++..+..+-+...+..+...|.+.|++++|...++++.+. .+.+...+..
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a 534 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYA 534 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 34556677888999999999999987544556777888999999999999999999999875 1223333333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC---------------------------------------CCCCCHHHHHHHHHHH
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCC---------------------------------------NLILDRSTFTAMVDAL 139 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~---------------------------------------~~~p~~~~~~~li~~~ 139 (246)
+...+...++.++|...++.+.. . ..+++...+..+...+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~-~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPR-AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCc-hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 33333444555555444443211 0 0123455677788899
Q ss_pred HhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHH
Q 043380 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLL 219 (246)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (246)
...|++++ |+..|+...+. -+.+...+..+...|...|++++|.+.++.+....+ .... ++..+
T Consensus 614 ~~~g~~~~----A~~~y~~al~~------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p----~~~~--~~~~l 677 (1157)
T PRK11447 614 QQRGDYAA----ARAAYQRVLTR------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN----DSLN--TQRRV 677 (1157)
T ss_pred HHcCCHHH----HHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC----CChH--HHHHH
Confidence 99999999 99999999886 233568899999999999999999999998865432 1121 56678
Q ss_pred HHHHHhcCChhHHHHHHHHHHhh
Q 043380 220 MEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 220 i~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..++...|++++|.++++.+...
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhh
Confidence 88899999999999999998764
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.6e-09 Score=90.40 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------------------CCCCCHHHHHHHHHHHHh
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEK----------------------------------GLEPDSLSYNILISACIK 63 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------------------------~~~~~~~t~~~li~~~~~ 63 (246)
.+-.-+-.+|...++.++|+++|+.+++ --+-.+.||.++-++|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 4445567788888888888888888763 224456788888888888
Q ss_pred cCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHh
Q 043380 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLY 141 (246)
Q Consensus 64 ~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 141 (246)
.++.+.|++.|++.++. .| ...+|+.+-.-+.....+|.|...|+.... +.|. -..|..+...|.+
T Consensus 434 Qkdh~~Aik~f~RAiQl---------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQL---------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred hhHHHHHHHHHHHhhcc---------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCchhhHHHHhhhhheec
Confidence 88888898888888875 34 445555555555555555555555555444 2222 1223344455555
Q ss_pred cCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
.++++. |+-.|+...+. .| +.+...++...+-+.|+.|+|..++++..
T Consensus 502 qek~e~----Ae~~fqkA~~I-------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 502 QEKLEF----AEFHFQKAVEI-------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred cchhhH----HHHHHHhhhcC-------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 555555 55555554442 22 23444445555555555555555555544
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.15 E-value=2.5e-08 Score=89.15 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=150.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC--ccHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLE--PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH--PDIFTYATL 99 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~--~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--p~~~~~~~l 99 (246)
+..+...|+.++|+..|+.+.+.-+ |+. .-..+..+|...|++++|...|+++.+.. ... +.......|
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~------p~~~~~~~~~~~~L 316 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP------ETIADLSDEELADL 316 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC------CCCCCCChHHHHHH
Confidence 3445677999999999999874221 322 22225678999999999999999988651 111 113456677
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCC-----------CCCC---HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKSCCN-----------LILD---RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~~~-----------~~p~---~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (246)
..++...|++++|..+++.+.. .. -.|+ ...+..+...+...|+.++ |+++++++...
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~-~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e----A~~~l~~al~~--- 388 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTIN-NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ----AEMRARELAYN--- 388 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhh-cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh---
Confidence 7788999999999999999988 31 1233 2355678889999999999 99999999886
Q ss_pred CCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 166 NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 166 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.+-+...+..+...+...|++++|++.+++.....+.. .. .+..+...+...|++++|+++++++.+..+
T Consensus 389 ---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~----~~--l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 389 ---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN----IN--LEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hH--HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 34456889999999999999999999999988654322 22 566677789999999999999999987654
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.3e-08 Score=87.76 Aligned_cols=200 Identities=10% Similarity=-0.039 Sum_probs=147.2
Q ss_pred cCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh---------cCCcchHHHHHHHHHhc
Q 043380 15 LNTIVMNAVIEASRE-----AQRIDEAYQILESVEKGLEPDSLSYNILISACIK---------TKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 15 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~---------~~~~~~a~~~~~~m~~~ 80 (246)
.+...|...+.+-.. .+..++|.+.|++...--+-+...|..+..++.. .+++++|...+++..+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 455566666666322 2346789999988764334455566655555442 23478999999999986
Q ss_pred cCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 81 GQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 81 ~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
.| +...+..+-..+...|++++|...|++..+ ..|+ ...+..+...+...|++++ |...+++
T Consensus 334 ---------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~e----Ai~~~~~ 397 (553)
T PRK12370 334 ---------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEE----ALQTINE 397 (553)
T ss_pred ---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHH
Confidence 44 566788888888999999999999999998 5576 6678889999999999999 9999999
Q ss_pred HHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHH
Q 043380 159 IVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237 (246)
Q Consensus 159 m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 237 (246)
..+. .|+. ..+..+...+...|++++|...+++....... -.+. .+..+..++...|++++|.+.++
T Consensus 398 Al~l-------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p-~~~~----~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 398 CLKL-------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ-DNPI----LLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred HHhc-------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc-cCHH----HHHHHHHHHHhCCCHHHHHHHHH
Confidence 9886 3443 23344555677789999999999987643211 1111 46778888899999999999998
Q ss_pred HHHhh
Q 043380 238 NTITR 242 (246)
Q Consensus 238 ~m~~~ 242 (246)
++...
T Consensus 466 ~~~~~ 470 (553)
T PRK12370 466 EISTQ 470 (553)
T ss_pred Hhhhc
Confidence 87654
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.13 E-value=1.2e-09 Score=93.82 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=132.9
Q ss_pred hhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-h------------------------CCCCCHHHHHHHH
Q 043380 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-K------------------------GLEPDSLSYNILI 58 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~------------------------~~~~~~~t~~~li 58 (246)
-+..++..|+.|+.+||..+|.-||..|+++.|- +|..|+ + .-.|...||..|+
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 3567888999999999999999999999999998 888775 3 2357788999999
Q ss_pred HHHHhcCCcchHHHHHHHHHh-------ccC-----------CCC-----------------------------------
Q 043380 59 SACIKTKKLDVTMPFNEQLKD-------NGQ-----------KCS----------------------------------- 85 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~-------~~~-----------~~~----------------------------------- 85 (246)
.+|...|++..-..+=+.|.. .|. .+.
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 999999987652222111221 120 000
Q ss_pred -------------------------CCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 043380 86 -------------------------SGGF-HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139 (246)
Q Consensus 86 -------------------------~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 139 (246)
.... .|++.+|..++.+-..+|+.+.|..++.+|++ .|+..+.+-|..|+-+
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke-~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE-KGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-cCCCcccccchhhhhc-
Confidence 1111 58888999999999999999999999999999 9998888888877766
Q ss_pred HhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCC
Q 043380 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188 (246)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 188 (246)
.++... +..+...|... |+.|+..|+..-+..+...|.
T Consensus 249 --~~~~q~----~e~vlrgmqe~-----gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 249 --INAAQV----FEFVLRGMQEK-----GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred --CccchH----HHHHHHHHHHh-----cCCCCcchhHHHHHhhhcchh
Confidence 778888 88888889888 899999998887777776444
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.13 E-value=5.7e-08 Score=80.41 Aligned_cols=206 Identities=9% Similarity=0.029 Sum_probs=148.1
Q ss_pred cCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCC-----
Q 043380 13 WKLNTIVMN--AVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS----- 85 (246)
Q Consensus 13 ~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----- 85 (246)
..|+...+. .....+...|+.+.|...++......+-+......+...|.+.|++++|.+++..+.+.+....
T Consensus 147 ~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~ 226 (398)
T PRK10747 147 LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAM 226 (398)
T ss_pred cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 345544333 3356888899999999999998765566788899999999999999999999999987631100
Q ss_pred -----------------------------CCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 043380 86 -----------------------------SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136 (246)
Q Consensus 86 -----------------------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 136 (246)
....+.+......+..++...|+.++|..++++..+ ..||... .++
T Consensus 227 l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l 301 (398)
T PRK10747 227 LEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLL 301 (398)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHH
Confidence 001112334455566777778888888888887776 3344422 234
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHH
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAG 216 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 216 (246)
.+....++.++ +.+..+...+. .+-|...+.++-..+.+.+++++|.+.|+...... |+.. +|
T Consensus 302 ~~~l~~~~~~~----al~~~e~~lk~------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-----P~~~--~~ 364 (398)
T PRK10747 302 IPRLKTNNPEQ----LEKVLRQQIKQ------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-----PDAY--DY 364 (398)
T ss_pred HhhccCCChHH----HHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCHH--HH
Confidence 44455688888 88888887775 33344667888899999999999999999987543 2221 57
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 043380 217 HLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 217 ~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
..+...+.+.|+.++|.+++++-.
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999999999988653
No 36
>PF12854 PPR_1: PPR repeat
Probab=99.13 E-value=9.8e-11 Score=60.74 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=20.1
Q ss_pred ccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043380 12 HWKLNTIVMNAVIEASREAQRIDEAYQILESV 43 (246)
Q Consensus 12 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 43 (246)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=5.8e-08 Score=75.00 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSL------SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+--+|-+.|-+.|.+|+|+.+.+.+.. .||.. ..-.|-.-|...|-+|.|+.+|..+.+.+ +--
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~--spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--------efa 140 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLE--SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EFA 140 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hhh
Confidence 334567778888999999999888763 45422 22345566777888999999999988752 233
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
......|+..|-...+|++|.++-+++.+ .+-.+. ...|--+...+....+++. |..+++...+.+
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~~d~----A~~~l~kAlqa~----- 210 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSDVDR----ARELLKKALQAD----- 210 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHhhC-----
Confidence 45677889999999999999999888877 433332 1235556666667788888 898888877751
Q ss_pred CCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhccC
Q 043380 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKG 245 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 245 (246)
+-++..-..+-+.+...|+++.|.+.++.+.+.++..++ .+-..|..+|...|++++....+.++.+..+|
T Consensus 211 -~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~-----evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 211 -KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS-----EVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred -ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 223344445667888999999999999999887754433 25688999999999999999999988876665
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.10 E-value=8e-08 Score=79.88 Aligned_cols=200 Identities=10% Similarity=0.020 Sum_probs=136.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCC--------------
Q 043380 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS-------------- 85 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------- 85 (246)
--.....+...|+.+.|...++.+.+..+-+...+..+...+...|++++|.+++..+.+.+....
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 333466777788888888888887754455667788888888888888888888888886632100
Q ss_pred ------C---------CCCCc-----cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHhc
Q 043380 86 ------S---------GGFHP-----DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST---FTAMVDALLYS 142 (246)
Q Consensus 86 ------~---------~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~ 142 (246)
. -.-.| +...+..+...+...|+.++|.+++++..+ ..||... ...........
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCC
Confidence 0 00012 556677777778888888888888888877 3355432 11122222334
Q ss_pred CChhhhhhHHHHHHHHHHHhhcCCCCCCcch---hhHHHHHHHHHhcCChhHHhhHHHh--hCCCCCCCCCchhhhHHHH
Q 043380 143 GSIKVVGLYALCIFGEIVKRVCSNPGLWPKP---HLYVSMMHELAARVDYDIVKSPYRR--MWPDSTGTISPEVQEEAGH 217 (246)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~ 217 (246)
++.+. +.+.++...+. .|+. ....++-..+.+.|++++|.+.|+. .... .|+.. .+.
T Consensus 313 ~~~~~----~~~~~e~~lk~-------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~~--~~~ 374 (409)
T TIGR00540 313 EDNEK----LEKLIEKQAKN-------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDAN--DLA 374 (409)
T ss_pred CChHH----HHHHHHHHHHh-------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCHH--HHH
Confidence 66677 77777776664 3333 4566888899999999999999994 3222 22222 567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 043380 218 LLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 218 ~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
.+...+.+.|+.++|.+++++-.
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999998753
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.10 E-value=1.5e-07 Score=84.21 Aligned_cols=209 Identities=17% Similarity=0.071 Sum_probs=143.9
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.+...+..+..++.+.|++++|.++|++....-+.+...+..+...+...|++++|...++++.+. .+.+.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~ 117 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKA 117 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4455568899999999999999999999876444566777888888999999999999999999885 23345
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHH----------------
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIF---------------- 156 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~---------------- 156 (246)
. +..+..++...|+.++|+..+++..+ ..|+ ...+..+...+...+..+. |+..+
T Consensus 118 ~-~~~la~~l~~~g~~~~Al~~l~~al~---~~P~~~~~~~~la~~l~~~~~~e~----Al~~l~~~~~~p~~~~~l~~~ 189 (765)
T PRK10049 118 N-LLALAYVYKRAGRHWDELRAMTQALP---RAPQTQQYPTEYVQALRNNRLSAP----ALGAIDDANLTPAEKRDLEAD 189 (765)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCChHH----HHHHHHhCCCCHHHHHHHHHH
Confidence 5 88888889999999999999999988 5566 5555566667766666664 44333
Q ss_pred ------------------------------HHHHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC
Q 043380 157 ------------------------------GEIVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWPDSTG 205 (246)
Q Consensus 157 ------------------------------~~m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (246)
+.+.+.....|...|.. ......+.++...|++++|...|+.+...+.
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~- 268 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ- 268 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC-
Confidence 33332211111111111 1111113445677899999999999876532
Q ss_pred CCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 206 TISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
..|... -..+...|...|++++|+++|+++.+..
T Consensus 269 ~~P~~a----~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 269 IIPPWA----QRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred CCCHHH----HHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 122221 2225668888999999999988876543
No 40
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=6.6e-09 Score=80.36 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=140.7
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
..|-+.||-.|-.+|-+..+++.|+.+|.+-...++-|+.-..-+-+.+-..++.++|.++|+...+. ...+
T Consensus 252 q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~n 323 (478)
T KOG1129|consen 252 QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPIN 323 (478)
T ss_pred cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCcc
Confidence 34555566667777777777777777776655444444444445555666667777777777777664 2344
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
.....++-..|.-.++++.|+..|.++.. .|+ -+...|+.+.-+|...++++- ++-.|+..... -..|+
T Consensus 324 vEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~----~L~sf~RAlst-----at~~~ 392 (478)
T KOG1129|consen 324 VEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDL----VLPSFQRALST-----ATQPG 392 (478)
T ss_pred ceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhh----hHHHHHHHHhh-----ccCcc
Confidence 55666666677777788888888888877 665 346667777777777888888 77777777665 33344
Q ss_pred h--hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 173 P--HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 173 ~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
. ..|..+-......||+..|.+.|+-....+..+ ..+++.|.-.-.+.|++++|..++..-....
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h------~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH------GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcch------HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 3 567777777777888888888888766443221 2268888888889999999999988765543
No 41
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=2.9e-08 Score=83.02 Aligned_cols=224 Identities=12% Similarity=0.025 Sum_probs=155.1
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------CC-CCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhccCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK------GL-EPDSLS-YNILISACIKTKKLDVTMPFNEQLKDNGQKC 84 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~-~~~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 84 (246)
.+.-..++..+...|...|+++.|+.+++...+ |. -|...+ .+.+-..|...+++++|..+|+++...-...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 334445666689999999999999999987432 21 233322 3345567888999999999999998652222
Q ss_pred CCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC------------------------------------
Q 043380 85 SSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC----CN------------------------------------ 124 (246)
Q Consensus 85 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~------------------------------------ 124 (246)
.....+.-..+++.|-.+|.+.|++++|...+++..+. .|
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 22233334568888888999999998887776654331 00
Q ss_pred ----CCC---C-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC-CCCcc-hhhHHHHHHHHHhcCChhHHhh
Q 043380 125 ----LIL---D-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP-GLWPK-PHLYVSMMHELAARVDYDIVKS 194 (246)
Q Consensus 125 ----~~p---~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~a~~ 194 (246)
+.+ . ..+++.|...|-..|++++ |+++++...+...... +..+. ...++.|-..|.+.+++++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~e----a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKE----AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhH----HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 111 1 3468888888888999999 8888888776632111 12222 4678889999999999999999
Q ss_pred HHHhhCCC--CCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 195 PYRRMWPD--STGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 195 ~~~~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+|.+.... ..|.-.|++ .++|..|...|.+.|+++.|+++.+.+..
T Consensus 431 l~~~~~~i~~~~g~~~~~~-~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDV-TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99874411 112233333 34799999999999999999999888764
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=7.3e-09 Score=86.56 Aligned_cols=201 Identities=13% Similarity=-0.020 Sum_probs=165.2
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
.+-++.+|-++-++|.-.++.+.|++.|++..+--+....+|+.+-.-+.....+|.|...|+..+.. .|.
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~r 487 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPR 487 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------Cch
Confidence 56678999999999999999999999999876422347888998888888999999999999997753 333
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 93 -IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 93 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
-..|.-|-..|.+.++++.|+-.|+...+ +.|. ......+...+-+.|+.++ |++++++.... -.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~----AL~~~~~A~~l------d~ 554 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDK----ALQLYEKAIHL------DP 554 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhH----HHHHHHHHHhc------CC
Confidence 33566677889999999999999999988 7787 5566778888999999999 99999998775 23
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
-|+..-......+...++.++|...+++++.- .|.+.. .|..+...|.+.|+.+.|+.-|.-+.+
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~----vP~es~--v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKEL----VPQESS--VFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh----CcchHH--HHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 35566666778888899999999999999854 444433 789999999999999999988766544
No 43
>PF12854 PPR_1: PPR repeat
Probab=99.08 E-value=1.9e-10 Score=59.68 Aligned_cols=33 Identities=39% Similarity=0.666 Sum_probs=24.9
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 120 (246)
|+.||..|||+||.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777763
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.05 E-value=2.8e-07 Score=76.32 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=128.2
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH--------HH-------------------------------
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSL--------SY------------------------------- 54 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------t~------------------------------- 54 (246)
+-++.....+...|.+.|++++|.+++..+.+....+.. +|
T Consensus 184 P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~ 263 (398)
T PRK10747 184 PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV 263 (398)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH
Confidence 456778889999999999999999999998732222211 11
Q ss_pred ---HHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HH
Q 043380 55 ---NILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RS 130 (246)
Q Consensus 55 ---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~ 130 (246)
..+..++...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...+ -.|+ ..
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---------~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk---~~P~~~~ 329 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR---------QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK---QHGDTPL 329 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------CCCHHH--HHHHhhccCCChHHHHHHHHHHHh---hCCCCHH
Confidence 12345566788999999999888875 455422 234444566999999999999988 4466 66
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
.+..+.+.|.+.+++++ |.+.|+...+. .|+..++..+...+.+.|+.++|..++++-.
T Consensus 330 l~l~lgrl~~~~~~~~~----A~~~le~al~~-------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQE----ASLAFRAALKQ-------RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHCCCHHH----HHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68899999999999999 99999999875 7999999999999999999999999998753
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8.6e-08 Score=77.37 Aligned_cols=207 Identities=11% Similarity=0.056 Sum_probs=156.2
Q ss_pred HHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCHHHHHH---------------------------
Q 043380 7 IVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLE---PDSLSYNI--------------------------- 56 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~t~~~--------------------------- 56 (246)
.....|.+-+...-+-...+.-...+++.|+.+|+++.+.-+ -|..+|+.
T Consensus 252 ~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E 331 (559)
T KOG1155|consen 252 RLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE 331 (559)
T ss_pred HHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc
Confidence 334444544444444444445556889999999999975311 14445543
Q ss_pred ----HHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHH
Q 043380 57 ----LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRS 130 (246)
Q Consensus 57 ----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~ 130 (246)
+-+-|+-.++.++|...|++..+. .|. ...|+.+-.-|....+...|.+-|++..+ +.| |-.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkL---------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyR 399 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKL---------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYR 399 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhc---------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHH
Confidence 333345566779999999998875 454 55788888889999999999999999888 444 467
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCch
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (246)
.|-.|..+|.-.+...= |+-.|++...- -+-|...|.+|-.+|.+.++.++|.+.|.....-+. ..
T Consensus 400 AWYGLGQaYeim~Mh~Y----aLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--te-- 465 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFY----ALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--TE-- 465 (559)
T ss_pred HHhhhhHHHHHhcchHH----HHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--cc--
Confidence 89999999999999888 99999988774 234679999999999999999999999998775432 11
Q ss_pred hhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 211 VQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
..++..|.+.|-+.++..+|.++|..-.+
T Consensus 466 --~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 --GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred --hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12789999999999999999999887655
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.04 E-value=1.8e-07 Score=83.27 Aligned_cols=203 Identities=12% Similarity=0.060 Sum_probs=160.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHH
Q 043380 22 AVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll 100 (246)
-.+-++...|+..++.+-|+.++ .+.+....+-..+.++|...+.+++|+.+|.++....-+ .....++......|.
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~--~~~~~~~~~~~~~L~ 374 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK--TFRNSDDLLDADDLY 374 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc--ccCCCcchHHHHHHH
Confidence 44667788999999999999998 565556668889999999999999999999999775100 001123444467899
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC------------CCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 101 MGFRHAKDLQSLLEIVFEMKSCCN------------LILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
-+|...+++++|..+++.+.+..- ..|| ...+..++..+...|+..+ |++.++.+...
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~----Ae~~le~l~~~----- 445 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT----AQKKLEDLSST----- 445 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-----
Confidence 999999999999999999987211 1233 3456677888999999999 99999999875
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
-+-|......+...+...|++.+|+..++......+... .+......++...|++++|.++.+.+...
T Consensus 446 -aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~------~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 446 -APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL------ILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 455778899999999999999999999988765433221 16677888889999999999999877654
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.2e-08 Score=77.82 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=165.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
--+.|+..+.+-|+-.++.++|...|++..+--+.....|+.|..-|....+...|.+-|+..++. .+.|-.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyR 399 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYR 399 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHH
Confidence 344566677778888999999999999876533556778999999999999999999999999985 466888
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.|-.|-.+|.-.+.+.=|+-.|++... ++|+ ...|.+|..+|.+.++.++ |.+.|.....- | ..+.
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~e----AiKCykrai~~-----~-dte~ 466 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEE----AIKCYKRAILL-----G-DTEG 466 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHH----HHHHHHHHHhc-----c-ccch
Confidence 999999999999999999999999988 6776 8999999999999999999 99999999885 2 3366
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCC--CCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWP--DSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
..+..|.+.|-+.++..+|...|....+ ...|.+.+.. ..+---|..-+.+.+++++|..+....
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t-~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET-IKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH-HHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 8899999999999999999999987664 2234455532 112222666677888888887765444
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.4e-07 Score=72.94 Aligned_cols=193 Identities=11% Similarity=0.123 Sum_probs=149.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc--HHHHHHHHHHHHcc
Q 043380 29 EAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD--IFTYATLLMGFRHA 106 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~ 106 (246)
-+.+.++|.++|-+|.+.-+-+..+--+|-+.|.+.|..|.|+.+...+..+ .+..-+ .....-|-.-|...
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHHHHHHh
Confidence 3578899999999998544455566678899999999999999999999986 122211 12455566778999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch----hhHHHHHHH
Q 043380 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP----HLYVSMMHE 182 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~----~~~~~li~~ 182 (246)
|-+|.|+++|..+.+ .+. .-....-.|+..|-...+|++ |+++-+.+.+. +-.+.. .-|.-+...
T Consensus 121 Gl~DRAE~~f~~L~d-e~e-fa~~AlqqLl~IYQ~treW~K----AId~A~~L~k~-----~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 121 GLLDRAEDIFNQLVD-EGE-FAEGALQQLLNIYQATREWEK----AIDVAERLVKL-----GGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred hhhhHHHHHHHHHhc-chh-hhHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHc-----CCccchhHHHHHHHHHHHH
Confidence 999999999999988 322 224567789999999999999 99999988876 333322 446777777
Q ss_pred HHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
+....+++.|..++.+....++..+..+ -.+-+.....|+++.|.+.++.+.++.+
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAs------i~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRAS------IILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehh------hhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 8888899999999999887766555433 3467778999999999999999987764
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.94 E-value=3.2e-07 Score=76.34 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=100.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH--HHHHHHHHHHcc
Q 043380 30 AQRIDEAYQILESVEKGLEPDS-LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF--TYATLLMGFRHA 106 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~~~~~~~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~ 106 (246)
.|+++.|++.+....+. .|+. ..+-....+....|+++.|.+.+.+..+. .|+.. .--.....+...
T Consensus 97 ~g~~~~A~~~l~~~~~~-~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---------~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH-AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---------AGNDNILVEIARTRILLAQ 166 (409)
T ss_pred CCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCcCchHHHHHHHHHHHHC
Confidence 57777777777665432 3432 23333445556667777777777776654 24432 233345666667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH--
Q 043380 107 KDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL-- 183 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~-- 183 (246)
|+++.|...++.+.+ ..|+ ...+..+...+...|+++. |.+.+..+.+. +..+.......-..++
T Consensus 167 ~~~~~Al~~l~~l~~---~~P~~~~~l~ll~~~~~~~~d~~~----a~~~l~~l~k~-----~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 167 NELHAARHGVDKLLE---MAPRHKEVLKLAEEAYIRSGAWQA----LDDIIDNMAKA-----GLFDDEEFADLEQKAEIG 234 (409)
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHc-----CCCCHHHHHHHHHHHHHH
Confidence 777777777777777 3354 5566677777777777777 77777777765 3322221111111111
Q ss_pred -HhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 184 -AARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 184 -~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
...+..+++...+..+....+...+.+.. .+..+...+...|+.++|.+.+++..++
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~--l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIA--LKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 12222222222333322211111111111 4556666667777777777776666554
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=3.1e-07 Score=70.48 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD----IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 124 (246)
.....+-.+...+...|++++|...|+++... .|+ ..++..+..++...|++++|...++.+.+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--- 98 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR---------YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--- 98 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Confidence 34566777888889999999999999999875 343 24677888899999999999999999988
Q ss_pred CCCCH----HHHHHHHHHHHhc--------CChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhH---------------
Q 043380 125 LILDR----STFTAMVDALLYS--------GSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLY--------------- 176 (246)
Q Consensus 125 ~~p~~----~~~~~li~~~~~~--------~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~--------------- 176 (246)
..|+. .++..+..++... |+.+. |.+.|+.+... .|+. ..+
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~-------~p~~~~~~~a~~~~~~~~~~~~~ 167 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAARE----AFEAFQELIRR-------YPNSEYAPDAKKRMDYLRNRLAG 167 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHH----HHHHHHHHHHH-------CCCChhHHHHHHHHHHHHHHHHH
Confidence 33431 2444455555544 67888 99999999886 2332 111
Q ss_pred --HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 177 --VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 177 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
..+...|.+.|++++|...++......+.. +.. ..++..+..++...|++++|..+++.+..+.+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~--~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDT-PAT--EEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC-cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 134566888999999999999987654322 111 12788999999999999999999999887653
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=4.2e-07 Score=69.77 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=128.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDS---LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
...+..+-.+...+.+.|+++.|...|+++....+.+. ..+..+..++...|++++|...++++.+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---------~ 100 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---------H 100 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------C
Confidence 34566777888899999999999999998864333333 46677888999999999999999999986 2
Q ss_pred ccH----HHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCCCHH-HH-----------------HHHHHHHH
Q 043380 91 PDI----FTYATLLMGFRHA--------KDLQSLLEIVFEMKSCCNLILDRS-TF-----------------TAMVDALL 140 (246)
Q Consensus 91 p~~----~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~p~~~-~~-----------------~~li~~~~ 140 (246)
|+. .++..+-.++... |+.++|.+.|+.+.. ..|+.. .+ ..+...|.
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 177 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYL 177 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 2455555555544 788999999999987 345422 21 13456788
Q ss_pred hcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCC
Q 043380 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPD 202 (246)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (246)
+.|++.. |...++...+.. |+-......+..+..++...|++++|..+++.+...
T Consensus 178 ~~g~~~~----A~~~~~~al~~~---p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 178 KRGAYVA----AINRFETVVENY---PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HcCChHH----HHHHHHHHHHHC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999 999999998862 122234578999999999999999999999988643
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.88 E-value=6.5e-07 Score=79.80 Aligned_cols=186 Identities=12% Similarity=-0.001 Sum_probs=140.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDS-LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~ 102 (246)
+-...+.|+++.|++.|++..+. .|+. .....++..+...|+.++|...+++.... -.........+...
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~-~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--------~n~~~~~llalA~l 111 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA-GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--------MNISSRGLASAARA 111 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh-CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--------CCCCHHHHHHHHHH
Confidence 33457899999999999988643 4543 23338888888999999999999998742 22334444444668
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHH
Q 043380 103 FRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181 (246)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~ 181 (246)
|...|++++|.++|+++.+ ..|+ ...+..++..+...++.++ |++.++.+... .|+...+..++.
T Consensus 112 y~~~gdyd~Aiely~kaL~---~dP~n~~~l~gLa~~y~~~~q~~e----Al~~l~~l~~~-------dp~~~~~l~lay 177 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLK---KDPTNPDLISGMIMTQADAGRGGV----VLKQATELAER-------DPTVQNYMTLSY 177 (822)
T ss_pred HHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHhhcCCHHH----HHHHHHHhccc-------CcchHHHHHHHH
Confidence 8888999999999999998 4455 6677788899999999999 99999998775 566666655555
Q ss_pred HHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHH
Q 043380 182 ELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 182 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
.+...++..+|.+.++++....+.... .+..++.++.+.|-...|.++.++
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e------~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEE------VLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHh
Confidence 555566666699999999876543222 577788999999999999887764
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=2.9e-07 Score=74.45 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC
Q 043380 30 AQRIDEAYQILESVEKG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~~~-~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 108 (246)
+|++++|.+.|.+...+ -.-....||+=+ .+-..|++++|+++|-++... +..+.....-+.+.|-...+
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i--------l~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI--------LLNNAEVLVQIANIYELLED 573 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHhhC
Confidence 45566666666554311 111112222222 223445555665555555432 22333344444444555555
Q ss_pred HHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcC
Q 043380 109 LQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187 (246)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g 187 (246)
+.+|.+++-+..+ +.|+ +...+.|...|-+.|+-.. |.+++-.--. -++-|..|...|...|....
T Consensus 574 ~aqaie~~~q~~s---lip~dp~ilskl~dlydqegdksq----afq~~ydsyr------yfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 574 PAQAIELLMQANS---LIPNDPAILSKLADLYDQEGDKSQ----AFQCHYDSYR------YFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHHHhcc---cCCCCHHHHHHHHHHhhcccchhh----hhhhhhhccc------ccCcchHHHHHHHHHHHhhH
Confidence 5555555444433 2232 4445555555555555555 4444433322 13334444444444444444
Q ss_pred ChhHHhhHHHh
Q 043380 188 DYDIVKSPYRR 198 (246)
Q Consensus 188 ~~~~a~~~~~~ 198 (246)
-++++..+|++
T Consensus 641 f~ekai~y~ek 651 (840)
T KOG2003|consen 641 FSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHHH
Confidence 44455554444
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.87 E-value=6.6e-07 Score=66.17 Aligned_cols=164 Identities=12% Similarity=-0.024 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHH
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RST 131 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~ 131 (246)
..-|--+|...|+...|..-+++.++. .|+ ..+|..+-..|.+.|..+.|.+-|+...+ +.|+ ..+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdV 105 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccch
Confidence 334555667777777777777777765 444 44777777777777777777777777766 5555 566
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchh
Q 043380 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV 211 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (246)
.|..-..+|..|.+++ |...|+..... |...--..||..+.-+..+.|+.+.|++.|++-...++...+
T Consensus 106 LNNYG~FLC~qg~~~e----A~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~--- 174 (250)
T COG3063 106 LNNYGAFLCAQGRPEE----AMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP--- 174 (250)
T ss_pred hhhhhHHHHhCCChHH----HHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh---
Confidence 7777777777777777 77777777665 222223466777777777777777777777776544422211
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 212 QEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
+.-.+.......|++..|..+++....++
T Consensus 175 ---~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 175 ---ALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred ---HHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 34556666677777777777777666554
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=8e-08 Score=74.51 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=155.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH-HHH
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY-ATL 99 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~-~~l 99 (246)
+-+-.+|.+.|.+.+|++.|+.... ..|-+.||-.|-++|.+...+..|+.+|.+-.+. .|-.+|| .-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---------fP~~VT~l~g~ 296 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---------FPFDVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---------CCchhhhhhhh
Confidence 5677899999999999999987642 2678889999999999999999999999998875 4555554 446
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHH
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 178 (246)
.+.+-..++.++|.++|+...+ ..| +.....++...|...++++. |+++++.+.+. |+ -+...|+.
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~----AlryYRRiLqm-----G~-~speLf~N 363 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEM----ALRYYRRILQM-----GA-QSPELFCN 363 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHH----HHHHHHHHHHh-----cC-CChHHHhh
Confidence 6677888999999999999988 334 46777888889999999999 99999999998 65 46778888
Q ss_pred HHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 179 MMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+--+|...+.+|.+..-|++..... ..|......|..|-...+..|++.-|.+.|+-...
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlsta---t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTA---TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhc---cCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 8888999999999998888765322 12222223688888888889999999888876543
No 56
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=1.3e-06 Score=78.97 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=165.1
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD-----SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 87 (246)
.+-+...|-..|......++.++|++++++....+.+. .-.|.++++.-..-|.-+...++|+++.+.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy------- 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY------- 1526 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-------
Confidence 34456678889999999999999999999987555442 235777777777778788899999999985
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
--....|..|...|.+.+..++|-++++.|.++.+ -....|...+..+.+..+-+. |..++.+..+.
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~a----a~~lL~rAL~~----- 1593 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEA----ARELLKRALKS----- 1593 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHH----HHHHHHHHHhh-----
Confidence 22345789999999999999999999999998544 557788889999999999999 99999998875
Q ss_pred CCCcc---hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 168 GLWPK---PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 168 ~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
-|- .......+..-.+.|+.+.+..+|+......+. ..+ .|+..++.-.+.|+.+.+..+|++....+-
T Consensus 1594 --lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK----RtD--lW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1594 --LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK----RTD--LWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred --cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc----chh--HHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 233 345566677777899999999999998865432 222 799999999999999999999999987653
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=1.2e-05 Score=59.75 Aligned_cols=198 Identities=10% Similarity=-0.089 Sum_probs=157.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYA 97 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~ 97 (246)
+.--|--.|.+.|+...|.+-+++..+.-+.+..+|..+-..|-+.|..+.|.+-|++.... .| +....|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---------~p~~GdVLN 107 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---------APNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------CCCccchhh
Confidence 44556778999999999999999876544667788999999999999999999999999875 44 456788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhH
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~ 176 (246)
..-.-+|..|++++|...|++... ..-.|. ..+|..+.-+..+.|+.+. |...|++-.+. -+-...+.
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~----A~~~l~raL~~------dp~~~~~~ 176 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQ----AEEYLKRALEL------DPQFPPAL 176 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchh----HHHHHHHHHHh------CcCCChHH
Confidence 888888999999999999999988 444444 6789999999999999999 99999998886 22234677
Q ss_pred HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 177 VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..+.......|++-.|..+++....... +... .....|+.--+.|+.+.+-++=..+.+.
T Consensus 177 l~~a~~~~~~~~y~~Ar~~~~~~~~~~~----~~A~--sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 177 LELARLHYKAGDYAPARLYLERYQQRGG----AQAE--SLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhccc----ccHH--HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8889999999999999999999875432 2211 3445566667789988888876666543
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.82 E-value=1.1e-07 Score=82.29 Aligned_cols=179 Identities=16% Similarity=0.113 Sum_probs=105.1
Q ss_pred HHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 043380 39 ILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117 (246)
Q Consensus 39 ~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 117 (246)
++..++ .|+.|+.+||..+|.-||..|+.+.|- +|.-|.-. ....+...|+.++.+-..+++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-------sLpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-------SLPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-------cccccchhHHHHHhcccccccccCCC----
Confidence 445566 799999999999999999999999998 88888766 44555555666666555555554443
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhh----------------cCCCCCCcchhhHHHHHH
Q 043380 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV----------------CSNPGLWPKPHLYVSMMH 181 (246)
Q Consensus 118 ~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~----------------~~~~~~~p~~~~~~~li~ 181 (246)
.|.+.||..|..+|...|++.. -..+.+.+..+...- .+.|+.-||..+.. .
T Consensus 80 --------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i---l 147 (1088)
T KOG4318|consen 80 --------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI---L 147 (1088)
T ss_pred --------CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH---H
Confidence 2455556666666666655443 000222111111110 02334444443211 1
Q ss_pred HHHhcCChhHHh------------------------------hHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 182 ELAARVDYDIVK------------------------------SPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 182 ~~~~~g~~~~a~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
...-.|-++.+. ++.+....-. + . ++..+|..+++.-..+|+++.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~-e--~--~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLV-E--A--PTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhh-c--C--CChHHHHHHHHHHHhcCchhh
Confidence 111222222222 2222221111 1 1 223389999999999999999
Q ss_pred HHHHHHHHHhhccCC
Q 043380 232 ALDKLSNTITRWKGI 246 (246)
Q Consensus 232 a~~~~~~m~~~g~~i 246 (246)
|..++.+|+++|-.|
T Consensus 223 Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999999765
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=4.6e-06 Score=68.02 Aligned_cols=199 Identities=11% Similarity=-0.044 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLS---YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
.|..+...+...|+.+.+...+....+..+++... .......+...|++++|.+++++..+. .+.|...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a 79 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLA 79 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHH
Confidence 34444445555566666555554433212222111 111122334456666666666666654 1222223
Q ss_pred HHH---HHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 96 YAT---LLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 96 ~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
+.. ........+..+.+.+.+.. . ....|+ ......+...+...|++++ |...+++..+. -+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~~~~~~a~~~~~~G~~~~----A~~~~~~al~~------~p~ 146 (355)
T cd05804 80 LKLHLGAFGLGDFSGMRDHVARVLPL--W-APENPDYWYLLGMLAFGLEEAGQYDR----AEEAARRALEL------NPD 146 (355)
T ss_pred HHHhHHHHHhcccccCchhHHHHHhc--c-CcCCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhh------CCC
Confidence 331 11111123334444444433 1 122333 3333444556666666666 66666666654 122
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
+...+..+..++...|++++|...+++.....+. ++......|..+...+...|++++|.+++++..
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3445555666666666666666666665433211 111111134456666666666666666666653
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=9.1e-07 Score=72.08 Aligned_cols=214 Identities=10% Similarity=0.081 Sum_probs=159.9
Q ss_pred hhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCC
Q 043380 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQK 83 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 83 (246)
.|+.++.....++. .|--+-..|+...+.++....|....+--+-|+.+|..--..+.-.+++++|..=|++.+..
T Consensus 348 d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--- 423 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--- 423 (606)
T ss_pred hHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc---
Confidence 45555555544433 27777788999999999999998876544567788888888888889999999999998875
Q ss_pred CCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 84 CSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 84 ~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.| +...|--+--+.-+.+.+++++..|++.+++ ++-.+..|+.....+...++++. |.+.|+..+..
T Consensus 424 ------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~----A~k~YD~ai~L 491 (606)
T KOG0547|consen 424 ------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDK----AVKQYDKAIEL 491 (606)
T ss_pred ------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHH----HHHHHHHHHhh
Confidence 45 4567777777777899999999999999882 44448899999999999999999 99999998875
Q ss_pred hcCCCCCCcchhhH--HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 163 VCSNPGLWPKPHLY--VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 163 ~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
.....++..+...+ ..++- +.=.+++..|..++++..+-++. . ..+|..|...-++.|+.++|+++|+.-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk---c---e~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK---C---EQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch---H---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 21111222222222 12221 12348999999999998765432 1 2289999999999999999999998754
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.5e-06 Score=70.45 Aligned_cols=186 Identities=10% Similarity=0.064 Sum_probs=145.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHc
Q 043380 26 ASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105 (246)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 105 (246)
.+-..|++++|++.|-.+..-...+....--+.+.|-...+...|.+++.+.... ++.|.....-|-..|-+
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQ 604 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhc
Confidence 3456799999999998776444567778888888899999999999999988764 66678899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH-H
Q 043380 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL-A 184 (246)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~-~ 184 (246)
.|+-.+|++.+-.-.+ . ++-+..+...|..-|....-++. +..+|+...- +.|+..-|..||-.| .
T Consensus 605 egdksqafq~~ydsyr-y-fp~nie~iewl~ayyidtqf~ek----ai~y~ekaal-------iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYR-Y-FPCNIETIEWLAAYYIDTQFSEK----AINYFEKAAL-------IQPNQSKWQLMIASCFR 671 (840)
T ss_pred ccchhhhhhhhhhccc-c-cCcchHHHHHHHHHHHhhHHHHH----HHHHHHHHHh-------cCccHHHHHHHHHHHHH
Confidence 9999999998776555 2 55567888888888888888888 9999998754 689999999998655 5
Q ss_pred hcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 185 ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
+.|++++|..++..+-.. .|.++. ....|++.+...|. .++.++-+.+
T Consensus 672 rsgnyqka~d~yk~~hrk----fpedld--clkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK----FPEDLD--CLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred hcccHHHHHHHHHHHHHh----CccchH--HHHHHHHHhccccc-hhHHHHHHHH
Confidence 689999999999998754 444444 66677777776663 3444444333
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.78 E-value=8.7e-06 Score=64.83 Aligned_cols=207 Identities=14% Similarity=0.062 Sum_probs=131.0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
.++...+-+........|+.+.|..-..++...-+.+.........+|.+.|++.+...+...+.+.| .--|.
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-------~l~~~ 222 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-------LLSDE 222 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-------CCChH
Confidence 44555555556666667777777777766654446677778888888888888888888888888874 22221
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc--
Q 043380 94 -------FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC-- 164 (246)
Q Consensus 94 -------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~-- 164 (246)
.+|+.++.-....++.+.-...|+..-+ ..+-++..-.+++.-+..+|+.++ |.++..+-.++..
T Consensus 223 e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~----A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 223 EAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDE----AQEIIEDALKRQWDP 296 (400)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHH----HHHHHHHHHHhccCh
Confidence 2455555554444444444444444433 123334444444555555555555 5554444433310
Q ss_pred --------CCC---------------CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHH
Q 043380 165 --------SNP---------------GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLME 221 (246)
Q Consensus 165 --------~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 221 (246)
..+ ...-++..+.+|-..|.+.+.|.+|...|+...+.. |+ .++|+.+.+
T Consensus 297 ~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-----~s--~~~~~~la~ 369 (400)
T COG3071 297 RLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR-----PS--ASDYAELAD 369 (400)
T ss_pred hHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-----CC--hhhHHHHHH
Confidence 000 123344778889999999999999999999765432 22 228999999
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 043380 222 AALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~ 240 (246)
++.+.|++.+|.++.++-.
T Consensus 370 ~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 370 ALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 9999999999999988754
No 63
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=2.1e-06 Score=64.66 Aligned_cols=159 Identities=9% Similarity=-0.010 Sum_probs=125.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHH
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll 100 (246)
..+-..+-..|+-+.+..+........+.|....+..+....+.|++..|...+.+.... -++|..+|+.+-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHH
Confidence 445556666777777777776655444556667777888889999999999999988873 577888999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHH
Q 043380 101 MGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179 (246)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 179 (246)
-+|-+.|+++.|..-|.+..+ +.|+ ...+|.+...|.-.|+.+. |..++...... -.-|...-..+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~----A~~lll~a~l~------~~ad~~v~~NL 208 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLED----AETLLLPAYLS------PAADSRVRQNL 208 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHH----HHHHHHHHHhC------CCCchHHHHHH
Confidence 999999999999999998888 5566 6678889999999999999 99998888775 23366777888
Q ss_pred HHHHHhcCChhHHhhHHHhhC
Q 043380 180 MHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~~~ 200 (246)
..+....|++++|+.+...-.
T Consensus 209 Al~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 209 ALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHhhcCChHHHHhhccccc
Confidence 888889999999988876543
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.73 E-value=1.5e-06 Score=73.03 Aligned_cols=183 Identities=11% Similarity=0.056 Sum_probs=131.3
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----h--CC-CCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHhccCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE----K--GL-EPDSL-SYNILISACIKTKKLDVTMPFNEQLKDNGQKC 84 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~--~~-~~~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 84 (246)
.+--..+++.|-.+|.+.|++++|...+++.. + +. .|.+. -++.+...|+..+++++|..++....+.-.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 34445677778889999999999998887631 2 22 23333 36677788889999999999998876642110
Q ss_pred CCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC---C--CCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 85 SSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC---N--LILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 85 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~--~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
......--..+++.|-..|-..|++++|.++|+...... + ..+. ...++.|...|.+.+.+.+ |.++|.+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~----a~~l~~~ 434 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE----AEQLFEE 434 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch----HHHHHHH
Confidence 000111223589999999999999999999999765521 1 1233 5668889999999999999 9998887
Q ss_pred HHHhhc-CCCCCCcc-hhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 159 IVKRVC-SNPGLWPK-PHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 159 m~~~~~-~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
-..-.. +.++ .|+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 435 ~~~i~~~~g~~-~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPD-HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCC-CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 554321 0111 233 3789999999999999999999999766
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=1.6e-05 Score=64.92 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH--HH
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI--FT 95 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~--~~ 95 (246)
.....+...+...|++++|...+++.....+.+...+..+-..+...|++++|..++++..... ...|+. ..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~------~~~~~~~~~~ 188 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW------DCSSMLRGHN 188 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc------CCCcchhHHH
Confidence 3444556678889999999999999875446667788889999999999999999999988751 112332 34
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH-H--HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC-CCCCc
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF-T--AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN-PGLWP 171 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~p 171 (246)
|..+...+...|++++|..++++........+..... + .++.-+...|.... +.+ |+.+....... ++ ..
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~----~~~-w~~~~~~~~~~~~~-~~ 262 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV----GDR-WEDLADYAAWHFPD-HG 262 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh----HHH-HHHHHHHHHhhcCc-cc
Confidence 6678888999999999999999986512112222222 2 33444444554433 332 22222210000 11 11
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCC-CCchhhhHHHHHHHH--HHHhcCChhHHHHHHHHHHhhcc
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGT-ISPEVQEEAGHLLME--AALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
......+...++...|+.+.|..+++.+....... ........+-..++. ++...|+.++|.+.+......+.
T Consensus 263 ~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 263 LAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22333467788889999999999999886432110 000000012233444 45689999999999998877653
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=7.1e-07 Score=70.38 Aligned_cols=152 Identities=12% Similarity=0.034 Sum_probs=103.9
Q ss_pred HHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHH---HHH
Q 043380 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT---AMV 136 (246)
Q Consensus 60 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~---~li 136 (246)
.+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ +..|..... +.+
T Consensus 111 i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv 174 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWV 174 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHH
Confidence 344567777776665432 3445666788888999999999999999988 445544332 333
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHH
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAG 216 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 216 (246)
..+.....+.+ |..+|+++.++ ..+++.+.+.+..++...|++++|++++.+....++. +.+ +.
T Consensus 175 ~l~~g~e~~~~----A~y~f~El~~~------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~----~~d--~L 238 (290)
T PF04733_consen 175 NLATGGEKYQD----AFYIFEELSDK------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN----DPD--TL 238 (290)
T ss_dssp HHHHTTTCCCH----HHHHHHHHHCC------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC----HHH--HH
T ss_pred HHHhCchhHHH----HHHHHHHHHhc------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC----CHH--HH
Confidence 33333456888 99999998764 6678889999999999999999999999997755432 222 55
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHhhc
Q 043380 217 HLLMEAALNDGQV-DLALDKLSNTITRW 243 (246)
Q Consensus 217 ~~li~~~~~~g~~-~~a~~~~~~m~~~g 243 (246)
..++-+....|+. +.+.+++.+++...
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 5677777777777 67888888877543
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.69 E-value=5.9e-05 Score=64.06 Aligned_cols=215 Identities=15% Similarity=0.084 Sum_probs=136.5
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHH-HHHHHHHhc-----CCcchHHHHHHHHHhcc-----
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYN-ILISACIKT-----KKLDVTMPFNEQLKDNG----- 81 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~-~li~~~~~~-----~~~~~a~~~~~~m~~~~----- 81 (246)
+.............+.+.|+.++|..+|..+.+. .|+-..|. .+..+.... ...+...++|+++...-
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence 4444566667788889999999999999888643 45544444 444444222 23455566666664432
Q ss_pred -----------------------------CC-----------------------------C-----CC-----CCCCccH
Q 043380 82 -----------------------------QK-----------------------------C-----SS-----GGFHPDI 93 (246)
Q Consensus 82 -----------------------------~~-----------------------------~-----~~-----~~~~p~~ 93 (246)
++ . .. ..-.|+.
T Consensus 113 ~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 113 PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 10 0 00 1123444
Q ss_pred H--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 94 F--TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 94 ~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
. ++.-+-..|-..|++++|+++++...+ ..|+ +..|..-.+.+-+.|++.+ |.+.++..... =.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~----Aa~~~~~Ar~L------D~ 259 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE----AAEAMDEAREL------DL 259 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhC------Ch
Confidence 3 334456667788888888888888777 5577 6667777888888888888 88888877765 13
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHH---HHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAG---HLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
-|...-+..+..+.+.|++++|.+++......+.+....-....+. .-...+|.+.|++..|++.|..+.+
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566667777888888888888888888765553222211111121 1244568888888888887776654
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=1.6e-05 Score=67.50 Aligned_cols=199 Identities=15% Similarity=0.101 Sum_probs=130.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
...+...|++++|++.++.-.+.+.............+.+.|+.++|..+|..+++. .|+...|...+..+
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---------NPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---------NPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCcHHHHHHHHHH
Confidence 455678899999999998876655555666778888999999999999999999997 56666555555544
Q ss_pred H------ccCCHHHHHHHHHHHHhCCC-----------CCCC-------------------HHHHHHHHHHHHhcCChhh
Q 043380 104 R------HAKDLQSLLEIVFEMKSCCN-----------LILD-------------------RSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 104 ~------~~~~~~~a~~~~~~m~~~~~-----------~~p~-------------------~~~~~~li~~~~~~~~~~~ 147 (246)
. ...+.+....+|+++..... +.++ +.+|+.|-..|.......-
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 3 12356777777777655210 0000 1234444444443333333
Q ss_pred hhhHHHHHHHHHHHhhc----CC-----CCCCcchh--hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHH
Q 043380 148 VGLYALCIFGEIVKRVC----SN-----PGLWPKPH--LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAG 216 (246)
Q Consensus 148 ~~~~a~~~~~~m~~~~~----~~-----~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 216 (246)
..+++........ .. ..-.|+.. ++.-+...|-..|++++|.+++++.....+.. +. .|
T Consensus 162 ----i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~----~e--ly 231 (517)
T PF12569_consen 162 ----IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL----VE--LY 231 (517)
T ss_pred ----HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HH--HH
Confidence 4444444433311 11 01234443 44556777889999999999999887654322 22 68
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 217 HLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 217 ~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
..-.+.|-+.|++++|.+.++..+.
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888889999999999998887654
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.64 E-value=2.2e-05 Score=62.45 Aligned_cols=148 Identities=10% Similarity=-0.049 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHhCCC--CC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHcc
Q 043380 31 QRIDEAYQILESVEKGLE--PD--SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~--~~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 106 (246)
+..+.++.-+.++....+ |+ ...|..+-..|...|+.++|...|.+..+. -+.+...|+.+-..+...
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHC
Confidence 344666666666643222 22 355777888899999999999999999985 233578999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHh
Q 043380 107 KDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~ 185 (246)
|++++|...|+...+ +.|+ ..+|..+...+...|++++ |.+.|+...+. .|+..........+..
T Consensus 112 g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~e----A~~~~~~al~~-------~P~~~~~~~~~~l~~~ 177 (296)
T PRK11189 112 GNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYEL----AQDDLLAFYQD-------DPNDPYRALWLYLAES 177 (296)
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHh-------CCCCHHHHHHHHHHHc
Confidence 999999999999988 6677 7788889999999999999 99999999876 3443222222223455
Q ss_pred cCChhHHhhHHHhhC
Q 043380 186 RVDYDIVKSPYRRMW 200 (246)
Q Consensus 186 ~g~~~~a~~~~~~~~ 200 (246)
.++.++|...|.+..
T Consensus 178 ~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 178 KLDPKQAKENLKQRY 192 (296)
T ss_pred cCCHHHHHHHHHHHH
Confidence 778999999997644
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=2.9e-06 Score=59.92 Aligned_cols=109 Identities=7% Similarity=-0.116 Sum_probs=88.0
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+..++..+..+...+...|++++|...|+....--+.+...|..+..++...|++++|...|++.... -+.+
T Consensus 20 l~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~~ 91 (144)
T PRK15359 20 LSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DASH 91 (144)
T ss_pred HHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCC
Confidence 34444456667788889999999999998876544668888999999999999999999999999985 2456
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 132 (246)
...+..+-.++...|++++|...|+.... ..|+...+
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~---~~p~~~~~ 128 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIK---MSYADASW 128 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHH
Confidence 77888899999999999999999999888 55764433
No 71
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.57 E-value=1.2e-07 Score=49.38 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=32.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 129 (246)
+||++|.+|++.|++++|.++|++|.+ .|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE-RGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCC
Confidence 799999999999999999999999999 9999973
No 72
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.57 E-value=1.4e-06 Score=71.58 Aligned_cols=131 Identities=14% Similarity=0.147 Sum_probs=108.7
Q ss_pred hhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK---GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
.++.--....+.+......+++.+....+++.+.+++-..++ ....-..|.+++++.|.+.|..+.+..++..=...
T Consensus 53 ~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y 132 (429)
T PF10037_consen 53 ELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY 132 (429)
T ss_pred HHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc
Confidence 344444455677777888889999989999999999988763 22233456789999999999999999999988887
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 043380 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142 (246)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 142 (246)
|+-||..|||.||..+.+.|++..|.++...|.. .+...+..|+..-+.+|.+.
T Consensus 133 -------GiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 133 -------GIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred -------ccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 8999999999999999999999999999999988 77777788887777777666
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=1.2e-06 Score=69.13 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=114.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
...+...|++++|++++... .+.......+..|.+.+++|.|.+.++.|.+. ..|.. ...|..++
T Consensus 109 A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---------~eD~~-l~qLa~aw 173 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI---------DEDSI-LTQLAEAW 173 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---------SCCHH-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCcHH-HHHHHHHH
Confidence 34566679999998887643 45677778899999999999999999999875 34433 33344433
Q ss_pred ----HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHH
Q 043380 104 ----RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179 (246)
Q Consensus 104 ----~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 179 (246)
.-.+.+.+|..+|+++.. ...+++.+.+.+..++...|++++ |.+++.+.... -.-+..+...+
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~e----Ae~~L~~al~~------~~~~~d~LaNl 241 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEE----AEELLEEALEK------DPNDPDTLANL 241 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHH----HHHHHHHHCCC-------CCHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHh------ccCCHHHHHHH
Confidence 334579999999999877 356789999999999999999999 99999987654 23356788888
Q ss_pred HHHHHhcCCh-hHHhhHHHhhCCC
Q 043380 180 MHELAARVDY-DIVKSPYRRMWPD 202 (246)
Q Consensus 180 i~~~~~~g~~-~~a~~~~~~~~~~ 202 (246)
+-+....|+. +.+.+++.++...
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHh
Confidence 8888888988 7788899998753
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.5e-05 Score=66.19 Aligned_cols=127 Identities=10% Similarity=0.015 Sum_probs=93.6
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC-cchhhHHHH
Q 043380 102 GFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW-PKPHLYVSM 179 (246)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-p~~~~~~~l 179 (246)
-|.+.++.+-|.++|.+... +.|+ +...+-+.-..-..+.+.+ |..+|+.....-....+-. --..+++.|
T Consensus 389 ey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~----A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPE----ALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHH----HHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 45667777888888887766 5565 6677777777777888999 9999988764311000111 234568889
Q ss_pred HHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 180 MHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
-.+|.+.+.+++|...++......+. +.. +|.++.-.|...|+++.|.+.|..-..
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k----~~~--~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPK----DAS--THASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCC----chh--HHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999997754332 222 899999999999999999999987653
No 75
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.54 E-value=0.00019 Score=57.44 Aligned_cols=205 Identities=13% Similarity=0.051 Sum_probs=149.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYA 97 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 97 (246)
.|-.-..+--+.|+.+.+-.++.+..+ .-.++...+-+.-+.....|+++.|..-..++.+. -+.+.....
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlr 191 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLR 191 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHH
Confidence 344445566667888888888877753 12445555666677777888888888888888876 244567788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR-------STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
....+|.+.|++..+..+...+.+ .|.--|+ .+|..+++-....+..+. -...|+..... .+
T Consensus 192 La~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~g----L~~~W~~~pr~------lr 260 (400)
T COG3071 192 LALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEG----LKTWWKNQPRK------LR 260 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchH----HHHHHHhccHH------hh
Confidence 888999999999999999999988 7776554 367888887777777777 67777777664 56
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCC---------------------------CCCCchhhhHHHHHHHHHH
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST---------------------------GTISPEVQEEAGHLLMEAA 223 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~li~~~ 223 (246)
-++..-.+++.-+.+.|+.++|.++..+..+... ...+.++ ..+.+|-..|
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~ 338 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLA 338 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHH
Confidence 6677778888888999999999988876543221 0001111 2688899999
Q ss_pred HhcCChhHHHHHHHHHHhhcc
Q 043380 224 LNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.+.+.+.+|.+.|+.-.+.+.
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCC
Confidence 999999999999997766543
No 76
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=4e-06 Score=71.42 Aligned_cols=116 Identities=11% Similarity=0.007 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhHHHHHHHH
Q 043380 106 AKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLYVSMMHEL 183 (246)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~li~~~ 183 (246)
.+++.++.+.|+.-.+ +.|- ..+|-.+-.+..+.+++.. |.+.|..-.. ..||. ..||.+-.+|
T Consensus 498 ~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~----av~aF~rcvt-------L~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQA----AVKAFHRCVT-------LEPDNAEAWNNLSTAY 563 (777)
T ss_pred chhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHH----HHHHHHHHhh-------cCCCchhhhhhhhHHH
Confidence 4556666666665544 3333 5567777777888888888 8888888765 35654 7899999999
Q ss_pred HhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 184 AARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+.++-.+|...+.+..+-+..++. .|...+....+-|.+++|++.+.++.+
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~------iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQ------IWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCe------eeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999999999998877654444 577788888899999999999988865
No 77
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.53 E-value=1.6e-07 Score=48.89 Aligned_cols=33 Identities=30% Similarity=0.624 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVE-KGLEPDS 51 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~ 51 (246)
+||++|.+|++.|++++|.++|++|. .|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 79999999999999999999999997 7888873
No 78
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.53 E-value=2e-07 Score=48.33 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
.+|+++|.+|++.|+++.|.++|++|.+ .|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~-~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE-QGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC
Confidence 5899999999999999999999999999 89887
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=1.2e-05 Score=59.88 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH-HHccCC-
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAKD- 108 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~- 108 (246)
++.+++...++...+.-+.|...|..+...|...|++++|...|++.... .+-+...+..+-.+ +...|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCC
Confidence 44455555565544344778899999999999999999999999999986 23356677777776 467777
Q ss_pred -HHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 043380 109 -LQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182 (246)
Q Consensus 109 -~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~ 182 (246)
.++|.+++++..+ ..|+ ..++..+...+...|++++ |...|+.+.+. ..|+..-+ .+|.+
T Consensus 125 ~~~~A~~~l~~al~---~dP~~~~al~~LA~~~~~~g~~~~----Ai~~~~~aL~l------~~~~~~r~-~~i~~ 186 (198)
T PRK10370 125 MTPQTREMIDKALA---LDANEVTALMLLASDAFMQADYAQ----AIELWQKVLDL------NSPRVNRT-QLVES 186 (198)
T ss_pred CcHHHHHHHHHHHH---hCCCChhHHHHHHHHHHHcCCHHH----HHHHHHHHHhh------CCCCccHH-HHHHH
Confidence 5999999999998 5565 7888999999999999999 99999999886 45555443 34443
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=5.3e-05 Score=66.68 Aligned_cols=134 Identities=11% Similarity=0.017 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 043380 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124 (246)
Q Consensus 46 ~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 124 (246)
....++..+-.|.......|++++|+.+++...+. .|| ......+...+.+.+++++|+..+++...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--- 148 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--- 148 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---
Confidence 34455666666777777777777777777777764 554 34566667777777777777777777776
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 125 LILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 125 ~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
..|+ ....+.+..++...|++++ |..+|++.... ..-+..++..+-.++-..|+.++|...|+....
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~----A~~~y~~~~~~------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQ----ADACFERLSRQ------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHH----HHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4465 4555666677777777777 77777777664 122356777777777777777777777777654
No 81
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.49 E-value=0.00011 Score=64.36 Aligned_cols=204 Identities=14% Similarity=0.036 Sum_probs=154.8
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+.|.+...-...+...-.|+.++|.+++.++-+..+.+...|-+|-..|-..|+.+++...+-..-- -.+-|
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--------L~p~d 206 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--------LNPKD 206 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--------cCCCC
Confidence 4444444444455445559999999999998655677889999999999999999998876544332 22345
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
...|-.+-......|+++.|.-.|.+..+ ..|+ ...+---+..|-+.|+... |.+.|.++.+. ..|
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~---~~p~n~~~~~ers~L~~~~G~~~~----Am~~f~~l~~~------~p~ 273 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQ---ANPSNWELIYERSSLYQKTGDLKR----AMETFLQLLQL------DPP 273 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHhChHHH----HHHHHHHHHhh------CCc
Confidence 67888999999999999999999999988 3444 5555667788999999999 99999999886 222
Q ss_pred c-----hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 172 K-----PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 172 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
. ..+.-.+++.+...++-+.|.+.++.......+... ...++.++..|.+...++.|......+..
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~----~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS----LEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc----ccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 2 234455677788888889999988887653222121 12689999999999999999999888765
No 82
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.48 E-value=0.00023 Score=60.64 Aligned_cols=203 Identities=8% Similarity=0.015 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
.|......=-..|..+....+|+.....++.....|-.....+...|+...|..++.+..+. .+.+...|-.
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwla 623 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLA 623 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHH
Confidence 33333333333444555555555544334444455555555555666666777666666664 2224556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc--------------
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC-------------- 164 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~-------------- 164 (246)
.+..-..+..++.|..+|.+... ..|+...|.--+...-..++.++ |.+++++-.+.+.
T Consensus 624 avKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~ee----A~rllEe~lk~fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEE----ALRLLEEALKSFPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHH----HHHHHHHHHHhCCchHHHHHHHhHHHH
Confidence 66666777777777777776655 44666666655555555666666 6666665555410
Q ss_pred -------------CCCCCCcc-hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChh
Q 043380 165 -------------SNPGLWPK-PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVD 230 (246)
Q Consensus 165 -------------~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (246)
.....-|+ .-.|..|.+.--+.|.+-+|..+++.-...+++... .|-..|..=.+.|+.+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~------lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL------LWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch------hHHHHHHHHHHcCCHH
Confidence 00011222 245555556656666666777777766554433221 5666777777777777
Q ss_pred HHHHHHHHHHhh
Q 043380 231 LALDKLSNTITR 242 (246)
Q Consensus 231 ~a~~~~~~m~~~ 242 (246)
.|..++.+-++.
T Consensus 771 ~a~~lmakALQe 782 (913)
T KOG0495|consen 771 QAELLMAKALQE 782 (913)
T ss_pred HHHHHHHHHHHh
Confidence 777776655543
No 83
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.48 E-value=9.2e-05 Score=62.92 Aligned_cols=198 Identities=8% Similarity=-0.021 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
....|-.....+-..|++..|..++.+.-.-.+.+...|-+.+..-..+..++.|..+|.+.... .|+...
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv 653 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERV 653 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchh
Confidence 33444444444455566666666665544323334455555555555555555555555555443 344444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-------------------------------CCCCCC-HHHHHHHHHHHHhcC
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSC-------------------------------CNLILD-RSTFTAMVDALLYSG 143 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-------------------------------~~~~p~-~~~~~~li~~~~~~~ 143 (246)
|.--+..-.-.++.++|.+++++..+. ....|+ ...|-.|...--+.|
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 444444444444444444444443330 012344 445555556666666
Q ss_pred ChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHH
Q 043380 144 SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAA 223 (246)
Q Consensus 144 ~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 223 (246)
.+-. |..+++.-..+ -+-|...|-..|+.-.+.|+.+.|..+..+..+.- |.+.. .|.--|...
T Consensus 734 ~~~r----AR~ildrarlk------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec----p~sg~--LWaEaI~le 797 (913)
T KOG0495|consen 734 QLVR----ARSILDRARLK------NPKNALLWLESIRMELRAGNKEQAELLMAKALQEC----PSSGL--LWAEAIWLE 797 (913)
T ss_pred chhh----HHHHHHHHHhc------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC----Cccch--hHHHHHHhc
Confidence 7777 88888877665 24466889999999999999999999888776542 22211 577777777
Q ss_pred HhcCChhHHHHHHHH
Q 043380 224 LNDGQVDLALDKLSN 238 (246)
Q Consensus 224 ~~~g~~~~a~~~~~~ 238 (246)
-+.++-.+....++.
T Consensus 798 ~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKK 812 (913)
T ss_pred cCcccchHHHHHHHh
Confidence 776665555554443
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=3e-05 Score=63.42 Aligned_cols=189 Identities=12% Similarity=0.040 Sum_probs=148.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHcc
Q 043380 28 REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHA 106 (246)
Q Consensus 28 ~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 106 (246)
...+++..|.++|+....+-..++..|--.+.+=.++...+.|..+++..+.. -|- ...|---+-.=-..
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---------lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---------LPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHh
Confidence 34667888999999887555778888888888888999999999999999875 343 33555555555667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc
Q 043380 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~ 186 (246)
|++..|.++|++-.+ ..|+...|++.|..-.+-+.++. |..+++...- +.|+..+|..-..---++
T Consensus 155 gNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeier----aR~IYerfV~-------~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 155 GNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIER----ARSIYERFVL-------VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred cccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHH----HHHHHHHHhe-------ecccHHHHHHHHHHHHhc
Confidence 999999999999988 88999999999999999999999 9999999876 469999999999999999
Q ss_pred CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 187 VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
|++..|..++......- + ........+.++...=.++..++.|.-+|+--+++
T Consensus 221 g~~~~aR~VyerAie~~-~--~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFL-G--DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred CcHHHHHHHHHHHHHHh-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998865322 1 11112224555555556677888888877765554
No 85
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.1e-05 Score=70.91 Aligned_cols=189 Identities=13% Similarity=0.083 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHc-----
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH----- 105 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~----- 105 (246)
+...+|...+.........++..++.+-+.+.+...+..|.+-|....+.. ...+|+.+.-+|-+.|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~------~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT------STKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh------ccCCchhHHHHhhHHHHHHhccc
Confidence 445566666666554455666667777777778777888888777666652 334677776666665532
Q ss_pred -------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHH
Q 043380 106 -------AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178 (246)
Q Consensus 106 -------~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 178 (246)
.+..++|+++|....+ . -+.|.+.-|.+.-.++..|++.. |..+|.++.+. ..-+..+|..
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~-~-dpkN~yAANGIgiVLA~kg~~~~----A~dIFsqVrEa------~~~~~dv~lN 685 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLR-N-DPKNMYAANGIGIVLAEKGRFSE----ARDIFSQVREA------TSDFEDVWLN 685 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHh-c-CcchhhhccchhhhhhhccCchH----HHHHHHHHHHH------HhhCCceeee
Confidence 2345789999998888 2 22347888899999999999999 99999999997 3345678899
Q ss_pred HHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 179 MMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+.++|...|++..|.++|+...+.....-.+. ....|.+++...|.+.+|.+.+...+.
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~----vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE----VLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH----HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999998775543222332 577899999999999999988765543
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=2e-05 Score=59.47 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=115.8
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
.+.|...-+.++...++.|++..|...|.+....-++|..+|+.+--+|-+.|+.++|..-|.+..+. ..-+
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~ 167 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNE 167 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCC
Confidence 44556667778999999999999999999998777999999999999999999999999999999985 3445
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
...+|.|...|.-.||.+.|..++..... .+ .-|..+-..+.......|++++ |.++...-..
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l-~~-~ad~~v~~NLAl~~~~~g~~~~----A~~i~~~e~~ 230 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYL-SP-AADSRVRQNLALVVGLQGDFRE----AEDIAVQELL 230 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHh-CC-CCchHHHHHHHHHHhhcCChHH----HHhhcccccc
Confidence 67889999999999999999999999887 32 2367778889999999999999 9987765543
No 87
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.46 E-value=4.4e-06 Score=68.66 Aligned_cols=126 Identities=15% Similarity=0.106 Sum_probs=105.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 043380 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125 (246)
Q Consensus 46 ~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 125 (246)
+.+.+......+++.+....+++.+..++-+..... .....-..|..++++.|...|..+.++++++.=.. .|+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~-----~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGi 134 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP-----NCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGI 134 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc-----ccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-ccc
Confidence 556678888999999999999999999999888751 12222334667999999999999999999999999 999
Q ss_pred CCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc
Q 043380 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186 (246)
Q Consensus 126 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~ 186 (246)
-||.++||.||+.+.+.|++.. |.++...|..+ ..-.+..|+..-+.+|.+-
T Consensus 135 F~D~~s~n~Lmd~fl~~~~~~~----A~~V~~~~~lQ-----e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 135 FPDNFSFNLLMDHFLKKGNYKS----AAKVATEMMLQ-----EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CCChhhHHHHHHHHhhcccHHH----HHHHHHHHHHh-----hccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999 99999999888 6666677777766666665
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=1.2e-05 Score=55.99 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
+......+...+...|+.++|.+.|+......+.+...|..+...+...|++++|..++++.... .+.+...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~ 87 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--------DPDDPRP 87 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCChHH
Confidence 34556677778888899999999998876444567788888888888899999999999988775 2445677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 135 (246)
+..+-..|...|++++|...|+...+ ..|+...+..+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 124 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIE---ICGENPEYSEL 124 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hccccchHHHH
Confidence 77788888899999999999988888 55665554433
No 89
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.40 E-value=0.00012 Score=64.58 Aligned_cols=216 Identities=14% Similarity=0.082 Sum_probs=120.9
Q ss_pred hHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCH------HHHHHHHHHHHhcCCcchHHHHH
Q 043380 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG----LEPDS------LSYNILISACIKTKKLDVTMPFN 74 (246)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~------~t~~~li~~~~~~~~~~~a~~~~ 74 (246)
++.++..+-.+.+...|.+...+...|++++|...|...... ..+|. .+--.+-...-..++.+.|.+.|
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 456667777788899999999999999999999999887532 23333 22222334444566788888888
Q ss_pred HHHHhccCCCCCCCCCccHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHH
Q 043380 75 EQLKDNGQKCSSGGFHPDIF-TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYAL 153 (246)
Q Consensus 75 ~~m~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~ 153 (246)
...... .|+-. .|--+.......+...+|...++.........|+. ++.+...|.+...+.. |.
T Consensus 520 k~Ilke---------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a--rsl~G~~~l~k~~~~~----a~ 584 (1018)
T KOG2002|consen 520 KSILKE---------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA--RSLLGNLHLKKSEWKP----AK 584 (1018)
T ss_pred HHHHHH---------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH--HHHHHHHHHhhhhhcc----cc
Confidence 888875 45533 34444433334456666666666665522223333 3334444555555554 44
Q ss_pred HHHHHHHHhhcCC-----------------------------------------C-CCCcchhhHHHHHHHHHhcCChhH
Q 043380 154 CIFGEIVKRVCSN-----------------------------------------P-GLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 154 ~~~~~m~~~~~~~-----------------------------------------~-~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
+-|....+.-... . .-+-|...-+.+--+++..|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 4444433320000 0 012233444555555555566666
Q ss_pred HhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 192 VKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
|..+|.++........+ +|-.+.++|+-+|++..|+++|+...+
T Consensus 665 A~dIFsqVrEa~~~~~d------v~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFED------VWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHHHhhCCc------eeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655533211111 455566666666666666666665543
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=0.00014 Score=54.18 Aligned_cols=148 Identities=7% Similarity=0.020 Sum_probs=113.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
+..|...|+++.+....+.+.. |. .. +...++.+++...++..... -+.|...|..|-..|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~---~~-~~-------~~~~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~ 83 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD---PL-HQ-------FASQQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYY 83 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC---cc-cc-------ccCchhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH
Confidence 4568889998887555433321 11 11 11255667777777777764 356788999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHH-HhcCC--hhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHH
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDAL-LYSGS--IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~-~~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 179 (246)
...|++++|...|++..+ +.|+ ...+..+..++ ...|+ .++ |.+++++..+. -.-+..++..+
T Consensus 84 ~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~----A~~~l~~al~~------dP~~~~al~~L 150 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQ----TREMIDKALAL------DANEVTALMLL 150 (198)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHh------CCCChhHHHHH
Confidence 999999999999999988 5565 77788887764 67777 488 99999999986 23356888999
Q ss_pred HHHHHhcCChhHHhhHHHhhCCCC
Q 043380 180 MHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
...+...|++++|...|+++....
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999987653
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=7.2e-05 Score=65.86 Aligned_cols=160 Identities=9% Similarity=0.067 Sum_probs=103.8
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
...++..+-.|.....+.|..++|+.+++....-.+-+......+...+.+.+++++|...+++.... .|+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------~p~ 152 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---------GSS 152 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---------CCC
Confidence 34456666677777777777777777777765433445566677777777777777777777777765 444
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 93 -IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 93 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
....+.+-.++.+.|++++|..+|++... . .|+ ..++..+-..+-..|+.++ |...|+...+. ..
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-~--~p~~~~~~~~~a~~l~~~G~~~~----A~~~~~~a~~~------~~ 219 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSR-Q--HPEFENGYVGWAQSLTRRGALWR----ARDVLQAGLDA------IG 219 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHh-c--CCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------hC
Confidence 44555666666777777777777777776 2 244 6667777777777777777 77777777665 33
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
|-...|+..+. +...-..+++.+.
T Consensus 220 ~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 220 DGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred cchHHHHHHHH------HHHHHHHHHHHcC
Confidence 44445544432 2333344555554
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.0005 Score=56.56 Aligned_cols=163 Identities=15% Similarity=0.023 Sum_probs=111.4
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
..|+...+...+.+......-..+-.++..-.+ -.-...-|..-+.. ...+.+++|+..+..++.. .||
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~YG~A~~~-~~~~~~d~A~~~l~~L~~~---------~P~ 338 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSK-RGGLAAQYGRALQT-YLAGQYDEALKLLQPLIAA---------QPD 338 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhC-ccchHHHHHHHHHH-HHhcccchHHHHHHHHHHh---------CCC
Confidence 456666666666655444333333333322222 01223334444443 4567889999999998875 555
Q ss_pred HH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 93 IF-TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 93 ~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
.. -+......+.+.++.++|.+.++.+.. ..|+ ....-.+..+|.+.|++.+ |..+++..... .+
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e----ai~~L~~~~~~------~p 405 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE----AIRILNRYLFN------DP 405 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH----HHHHHHHHhhc------CC
Confidence 44 445556668889999999999999888 6677 5556678888999999999 99999988775 56
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
-|+..|..|-.+|...|+..++..-.-+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 67788999999999999887766555544
No 93
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.37 E-value=6.6e-05 Score=65.60 Aligned_cols=201 Identities=17% Similarity=0.167 Sum_probs=145.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCC-----------------
Q 043380 23 VIEASREAQRIDEAYQILESVE--KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQK----------------- 83 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------------- 83 (246)
.+..|...++.+.|.+.++... .+-..+...++++...+.+...++.|......+.....+
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 3455666777788888887754 244567778899999999999999999988888772110
Q ss_pred ---CCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 84 ---CSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD--RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 84 ---~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
.-..++.++... --+.-++.+....+....+...... ..+.|+ ...|.-+..+|...|++.+ |+++|..
T Consensus 366 ~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~----Al~~l~~ 439 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKE----ALRLLSP 439 (895)
T ss_pred ccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHH----HHHHHHH
Confidence 012233444444 2233344444444444444444444 444443 6779999999999999999 9999999
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHH
Q 043380 159 IVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 159 m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
+... ...-+...|-.+..+|...|..++|.+.++......+.... +-.+|-..+-+.|+.++|.+.+..
T Consensus 440 i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D------~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 440 ITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD------ARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh------hhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9887 33345779999999999999999999999999876655444 445688889999999999999988
Q ss_pred HH
Q 043380 239 TI 240 (246)
Q Consensus 239 m~ 240 (246)
+.
T Consensus 509 ~~ 510 (895)
T KOG2076|consen 509 II 510 (895)
T ss_pred cc
Confidence 64
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=5.1e-05 Score=53.57 Aligned_cols=107 Identities=12% Similarity=-0.036 Sum_probs=88.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 043380 38 QILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVF 117 (246)
Q Consensus 38 ~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 117 (246)
.+|++..+ ..|+ .+......+...|++++|...|...... -+.+...|..+-.++.+.|++++|...|+
T Consensus 14 ~~~~~al~-~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 14 DILKQLLS-VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHH-cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444431 2344 3556777888999999999999999885 24477899999999999999999999999
Q ss_pred HHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 118 EMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 118 ~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.... ..|+ ...+..+..++...|++++ |...|+.....
T Consensus 83 ~Al~---l~p~~~~a~~~lg~~l~~~g~~~e----Ai~~~~~Al~~ 121 (144)
T PRK15359 83 HALM---LDASHPEPVYQTGVCLKMMGEPGL----AREAFQTAIKM 121 (144)
T ss_pred HHHh---cCCCCcHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh
Confidence 9998 4565 7889999999999999999 99999999875
No 95
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.35 E-value=1.1e-06 Score=45.45 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
.+|+++|.+|++.|+++. |.++|++|.+. |++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~----a~~~~~~M~~~-----gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDA----ALQLFDEMKEQ-----GVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHH----HHHHHHHHHHh-----CCCC
Confidence 589999999999999999 99999999998 8887
No 96
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.34 E-value=1.5e-05 Score=52.42 Aligned_cols=81 Identities=22% Similarity=0.398 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCC-CccHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCC
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF-HPDIFTYATLLMGFRHAK--------DLQSLLEIVFEMKSCCN 124 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~ 124 (246)
-...|..+...+++.....+|+.++.. |+ .|+..+|+.++.+.++.. +....+.+|+.|.. .+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN-------~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~ 99 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRN-------GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NK 99 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhc-------CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hc
Confidence 345677777889999999999999998 78 899999999999987654 24567889999999 99
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 043380 125 LILDRSTFTAMVDALLYS 142 (246)
Q Consensus 125 ~~p~~~~~~~li~~~~~~ 142 (246)
++|+..+|+.++..+.+.
T Consensus 100 lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 100 LKPNDETYNIVLGSLLKG 117 (120)
T ss_pred cCCcHHHHHHHHHHHHHh
Confidence 999999999999987653
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=4.2e-05 Score=65.47 Aligned_cols=189 Identities=12% Similarity=0.006 Sum_probs=150.6
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
.+|-...=-.+...+.+.|-+..|..+|+++. .|..+|.+|+..|+..+|..+..+..+. +||
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d 456 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK---------DPD 456 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCc
Confidence 45555555667788889999999999999986 4778899999999999999999998875 799
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
...|..+.+......-+++|.++.+..-. . .-..+.....+.+++.+ +.+.|+.-... -...
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~sa-r-------A~r~~~~~~~~~~~fs~----~~~hle~sl~~------nplq 518 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYISA-R-------AQRSLALLILSNKDFSE----ADKHLERSLEI------NPLQ 518 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhhH-H-------HHHhhccccccchhHHH----HHHHHHHHhhc------Cccc
Confidence 99999999988877788999999887655 1 11112222333789999 99999887665 2334
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..+|-..-.+..+.++++.|.+.|.....-.+++ ...||.+-.+|.+.|+-.+|...+++-.+-
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~------~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN------AEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 5788888888899999999999999987544332 238999999999999999999999887653
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=0.00034 Score=64.14 Aligned_cols=188 Identities=9% Similarity=0.026 Sum_probs=153.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
.|.++++.---.|.-+...++|++..+-+. ....|..|..-|.+.+..++|.++++.|.+. +.-....|..
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK--------F~q~~~vW~~ 1569 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK--------FGQTRKVWIM 1569 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--------hcchhhHHHH
Confidence 577888877778888999999999875332 2356889999999999999999999999995 5567779999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILD---RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
.+..+.+..+-++|..++.+..+ ..|. ....+-.+..-.+.|+.++ +..+|+..... .+--...
T Consensus 1570 y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEFk~GDaeR----GRtlfEgll~a------yPKRtDl 1636 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEFKYGDAER----GRTLFEGLLSA------YPKRTDL 1636 (1710)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHhhcCCchh----hHHHHHHHHhh------CccchhH
Confidence 99999999999999999999888 4454 3445666777778999999 99999999886 2223468
Q ss_pred HHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 176 YVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
|+..|+.-.++|+.+.+..+|+++...+ +++.-..+.|...++.=-..|+-..
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~---l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELK---LSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC---CChhHhHHHHHHHHHHHHhcCchhh
Confidence 9999999999999999999999998665 5555555578888877767676543
No 99
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.32 E-value=3.4e-05 Score=60.80 Aligned_cols=134 Identities=10% Similarity=0.113 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.+|..+++...+.+..+.|..+|.+.++...+..+.....+++.. ...++.+. |..+|+...+. +..+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~----A~~Ife~glk~------f~~~~ 70 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKR----ARKIFERGLKK------FPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHH----HHHHHHHHHHH------HTT-H
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHH----HHHHHHHHHHH------CCCCH
Confidence 578899999999999999999999998733344555555555543 33577888 99999999986 56677
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchh-hhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV-QEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..|..-+.-+...++.+.|..+|++.... +++.. ....|...++.=.+.|+++.+.++.+++.+.
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISS----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCT----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999754 44444 4458999999999999999999999887653
No 100
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.31 E-value=8.2e-07 Score=44.84 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 125 (246)
+||+++|++|++.|++++|.++|++|.+ .|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~-~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRE-RGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhH-CcC
Confidence 3788999999999999999999999888 654
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00011 Score=61.26 Aligned_cols=190 Identities=14% Similarity=0.096 Sum_probs=135.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHH
Q 043380 25 EASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGF 103 (246)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~ 103 (246)
.-+.+.|++.+|.=.|+...+.-+-+...|--|-.....+++-..|+.-+.+..+. .|+ ....-.|--.|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L---------dP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL---------DPTNLEALMALAVSY 363 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc---------CCccHHHHHHHHHHH
Confidence 34566777777777777654333456677777777777777777777777776654 443 33333333334
Q ss_pred HccCCHH-----------------------------------------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 043380 104 RHAKDLQ-----------------------------------------SLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142 (246)
Q Consensus 104 ~~~~~~~-----------------------------------------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 142 (246)
...|.-. ...++|-++....+..+|..++..|--.|-..
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 3333333 33344444444244446778888899999999
Q ss_pred CChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHH
Q 043380 143 GSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLME 221 (246)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 221 (246)
|++++ |.++|+...+. +|+ ..+||.|--.++...+..+|...+++..+..++++. +...|.-
T Consensus 444 ~efdr----aiDcf~~AL~v-------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR------~RyNlgI 506 (579)
T KOG1125|consen 444 GEFDR----AVDCFEAALQV-------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR------VRYNLGI 506 (579)
T ss_pred hHHHH----HHHHHHHHHhc-------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee------eehhhhh
Confidence 99999 99999999874 565 588999999999999999999999999888777776 4455788
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 043380 222 AALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~ 240 (246)
+|...|.+++|.+.|=..+
T Consensus 507 S~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 8999999999999886543
No 102
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=3.9e-05 Score=62.81 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHH
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll 100 (246)
.+|+..+...++++.|.++|+++.+. .|+ ....+.+.+...++..+|.+++.+.... .+-|........
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~-~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL~~Qa 241 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER-DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELLNLQA 241 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc-CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 34555666689999999999999743 355 4445788888888899999999999875 344666777777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhhhhhHHHHHHHHHH
Q 043380 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDR-STFTAMVDALLYSGSIKVVGLYALCIFGEIV 160 (246)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~ 160 (246)
..+.+.++++.|+.+.+++.. ..|+. .+|..|..+|...|+++. |+..++.+.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~----ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFEN----ALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHH----HHHHHhcCc
Confidence 778999999999999999998 77884 589999999999999999 999988764
No 103
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.28 E-value=3.5e-05 Score=50.73 Aligned_cols=85 Identities=12% Similarity=0.149 Sum_probs=70.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCC----hhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNL-ILDRSTFTAMVDALLYSGS----IKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
|-...|..+...+++.....+|+.+++ .|+ .|+..+|+.++.+.+++.- ++.+....+.+|+.|... ++
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-----~l 100 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-----KL 100 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-----cc
Confidence 344566666677999999999999999 999 9999999999999988643 333333389999999998 89
Q ss_pred CcchhhHHHHHHHHHh
Q 043380 170 WPKPHLYVSMMHELAA 185 (246)
Q Consensus 170 ~p~~~~~~~li~~~~~ 185 (246)
+|+..||+.++..+.+
T Consensus 101 KP~~etYnivl~~Llk 116 (120)
T PF08579_consen 101 KPNDETYNIVLGSLLK 116 (120)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999998765
No 104
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=5.8e-05 Score=61.85 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=100.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
.-.+|+..+...++++.|.++|+++.+ .. |+. ...+++.+...++-.+ |.+++++..+. .+-+..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~-~~--pev--~~~LA~v~l~~~~E~~----AI~ll~~aL~~------~p~d~~ 235 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE-RD--PEV--AVLLARVYLLMNEEVE----AIRLLNEALKE------NPQDSE 235 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh-cC--CcH--HHHHHHHHHhcCcHHH----HHHHHHHHHHh------CCCCHH
Confidence 455677778888999999999999998 33 654 4458888888888888 99999998875 334566
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
....-...+...++.+.|..+.++..... |.+.. +|..|..+|...|+++.|+..++.+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls----P~~f~--~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS----PSEFE--TWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC----chhHH--HHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 67777778999999999999999998543 33322 8999999999999999999988765
No 105
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=0.00091 Score=55.08 Aligned_cols=206 Identities=11% Similarity=0.083 Sum_probs=162.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH--HHHH----HHH----HHhcCCcchHHHHHHHHHhccCC
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLS--YNIL----ISA----CIKTKKLDVTMPFNEQLKDNGQK 83 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t--~~~l----i~~----~~~~~~~~~a~~~~~~m~~~~~~ 83 (246)
+.|-.+|=..+..--..|+.+...++|+..-.+++|-..- |--. |+- =....+.+.+.++|...++.
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--- 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--- 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence 4556667777777778899999999999988777773321 2211 121 12467889999999999985
Q ss_pred CCCCCCCccHHHHHHHHHHH----HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHH
Q 043380 84 CSSGGFHPDIFTYATLLMGF----RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159 (246)
Q Consensus 84 ~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m 159 (246)
++....||.-+=-.| .+..++..|.+++-... |..|-..+|-..|..-...++++. +..+++..
T Consensus 396 -----IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDR----cRkLYEkf 463 (677)
T KOG1915|consen 396 -----IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDR----CRKLYEKF 463 (677)
T ss_pred -----cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHH----HHHHHHHH
Confidence 666777877765555 46789999999988764 578999999999999999999999 99999999
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 160 VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
..- -+-|..+|......-...|+.+.|..+|.-..... ..-.|.+ .|.+.|+.=...|.+++|..+++++
T Consensus 464 le~------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp-~ldmpel---lwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 464 LEF------SPENCYAWSKYAELETSLGDTDRARAIFELAISQP-ALDMPEL---LWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred Hhc------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc-ccccHHH---HHHHhhhhhhhcchHHHHHHHHHHH
Confidence 884 23356889998888899999999999999887654 2334444 6888888888999999999999999
Q ss_pred Hhhcc
Q 043380 240 ITRWK 244 (246)
Q Consensus 240 ~~~g~ 244 (246)
+++.+
T Consensus 534 L~rt~ 538 (677)
T KOG1915|consen 534 LDRTQ 538 (677)
T ss_pred HHhcc
Confidence 88654
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.25 E-value=0.00012 Score=50.98 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH
Q 043380 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 50 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 129 (246)
+......+...+...|++++|...|+.+... -+.+...|..+...+...|++++|...++.... .+ +.+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-p~~~ 85 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-LD-PDDP 85 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCh
Confidence 4455677778888999999999999999885 244678889999999999999999999999877 32 2346
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..+..+...|...|+++. |...|+...+.
T Consensus 86 ~~~~~la~~~~~~g~~~~----A~~~~~~al~~ 114 (135)
T TIGR02552 86 RPYFHAAECLLALGEPES----ALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHh
Confidence 778888899999999999 99999998875
No 107
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.23 E-value=1.5e-06 Score=43.80 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
+|++|+++|++.|++++|.++|++|.++|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 68888888888888888888888888776
No 108
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.23 E-value=4e-05 Score=48.85 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHH
Q 043380 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 99 (246)
+..+...+...|++++|...|+...+-.+.+...+..+...+...+++++|.+.+...... .+.+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCcchhHHHHH
Confidence 4556667777788888888887765433444566777777777778888888888777764 23334567777
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~ 121 (246)
...+...|++++|...+....+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 7777777888888877777655
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.20 E-value=0.00044 Score=62.10 Aligned_cols=205 Identities=14% Similarity=0.094 Sum_probs=126.3
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDS-LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 91 (246)
.+.+...+..|+..+...+++++|.++.+....- .|+. ..|-.+...+...++.+.+..+ .+.+. +..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--------~~~ 95 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--------FSQ 95 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--------ccc
Confidence 5667788999999999999999999999865432 3433 3343333456666666666555 44332 222
Q ss_pred c-------------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhH
Q 043380 92 D-------------------IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLY 151 (246)
Q Consensus 92 ~-------------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~ 151 (246)
+ ...+-.|..+|-+.|+.++|..+|+++.+ .. |+ ..+.|.+...|+.. ++++
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D--~~n~~aLNn~AY~~ae~-dL~K---- 167 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD--RDNPEIVKKLATSYEEE-DKEK---- 167 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC--cccHHHHHHHHHHHHHh-hHHH----
Confidence 2 25677788888899999999999999999 44 55 88899999999999 9999
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
|.+++.......-.......=...|..++.. ...+++.-.++.+.+.... ++ .....++-.+-..|....++++
T Consensus 168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~-~~---~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHR-EF---TRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhh-cc---chhHHHHHHHHHHHhhhhhhhH
Confidence 9988888766511000000000112222111 1223334444444443221 10 0011145556666666777777
Q ss_pred HHHHHHHHHhh
Q 043380 232 ALDKLSNTITR 242 (246)
Q Consensus 232 a~~~~~~m~~~ 242 (246)
+..+++.+.+.
T Consensus 242 ~i~iLK~iL~~ 252 (906)
T PRK14720 242 VIYILKKILEH 252 (906)
T ss_pred HHHHHHHHHhc
Confidence 77777766553
No 110
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00029 Score=56.93 Aligned_cols=211 Identities=9% Similarity=-0.038 Sum_probs=123.1
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHhcCCcchHHHHHHHHHhcc-CC----
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLS----YNILISACIKTKKLDVTMPFNEQLKDNG-QK---- 83 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t----~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~---- 83 (246)
.+-|+.....+..++...|+.+.|+..|++.+. +.|+..+ |..|+ .+.|+++....+...+.... ..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-ANPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-CChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 677889999999999999999999999998763 1232211 22221 23333333333333332210 00
Q ss_pred ------------------CCCCCC--Cc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHh
Q 043380 84 ------------------CSSGGF--HP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLY 141 (246)
Q Consensus 84 ------------------~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 141 (246)
..+..+ .| +...|-.=-+++...+++++|.=.|+.... +.|. ...|-.|+..|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHh
Confidence 000011 22 222333334556778899999988988877 6655 7889999999999
Q ss_pred cCChhhhhhHHHHHHHHHHHh----hc-------------------------CCCCCCcch-hhHHHHHHHHHhcCChhH
Q 043380 142 SGSIKVVGLYALCIFGEIVKR----VC-------------------------SNPGLWPKP-HLYVSMMHELAARVDYDI 191 (246)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~----~~-------------------------~~~~~~p~~-~~~~~li~~~~~~g~~~~ 191 (246)
.|.+.+ |.-+-+...+. .. +...+.|+- ...+.+...+...|..+.
T Consensus 381 ~~~~kE----A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 381 QKRFKE----ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred hchHHH----HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence 999999 55544443332 00 111233432 344555566666666777
Q ss_pred HhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 192 VKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+..+++...... +... ..+.|.+.+.....+++|.+.|..-.+
T Consensus 457 ~i~LLe~~L~~~----~D~~---LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 457 IIKLLEKHLIIF----PDVN---LHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHhhc----cccH---HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777766655331 1111 456666666667777777766665544
No 111
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=0.00024 Score=50.19 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
...|..++..+. .++...+...++.+....+-.| .....-.+...+...|++++ |...|+..... .-.|
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~----A~~~l~~~~~~-----~~d~ 81 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDE----AKAALEKALAN-----APDP 81 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhh-----CCCH
Confidence 446777777774 8999999999999988221111 12333445678889999999 99999999987 3222
Q ss_pred c--hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHH
Q 043380 172 K--PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 172 ~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
+ ......+...+...|++++|...++...... ..+. .+...-+.|.+.|+.++|...|+.
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~---~~~~----~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQIPDEA---FKAL----AAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc---hHHH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 2355667888999999999999998753221 2222 577888999999999999999975
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=0.00031 Score=49.60 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLS---YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
...|..++..+ ..++...+...++.+....+.+... .-.+-..+...|++++|...|+..... ...|+.
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l 83 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPEL 83 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHH
Confidence 34677777777 4899999999999987544444222 233457778899999999999999987 323332
Q ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 94 --FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 94 --~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
.....|...+...|++++|+..++.... .. .....+......|...|++++ |...|+.
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-~~--~~~~~~~~~Gdi~~~~g~~~~----A~~~y~~ 143 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQIPD-EA--FKALAAELLGDIYLAQGDYDE----ARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccC-cc--hHHHHHHHHHHHHHHCCCHHH----HHHHHHH
Confidence 2455577888999999999999977544 32 345567788899999999999 9999875
No 113
>PLN02789 farnesyltranstransferase
Probab=98.17 E-value=0.0021 Score=51.63 Aligned_cols=196 Identities=9% Similarity=-0.040 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHhccCCCCCCCCCccHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK-KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYA 97 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 97 (246)
+++.+-..+...+..++|+.+.+.+..-.+-+...|+.--..+...+ ++++++.+++++.+. -+-+..+|+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~ 110 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWH 110 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhH
Confidence 44555556666788889999988876433445566776666666666 578899999888875 233445676
Q ss_pred HHHHHHHccCCH--HHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 98 TLLMGFRHAKDL--QSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 98 ~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
.--..+.+.|+. ++++.+++.+.+ ..|. -.+|+...-.+...|++++ +++.++++.+. . .-|..
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~e----eL~~~~~~I~~-----d-~~N~s 177 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWED----ELEYCHQLLEE-----D-VRNNS 177 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHH-----C-CCchh
Confidence 655555555653 677888888877 3444 6778888888888888999 99999998886 2 23456
Q ss_pred hHHHHHHHHHhc---CCh----hHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc----CChhHHHHHHHHHHh
Q 043380 175 LYVSMMHELAAR---VDY----DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND----GQVDLALDKLSNTIT 241 (246)
Q Consensus 175 ~~~~li~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~ 241 (246)
+|+....++.+. |.. +....+..+....++...+ +|+.+...+... ++..+|.+.+.+..+
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S------aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES------PWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC------HHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 666666555544 222 3455555444443322222 677777776662 333556666665443
No 114
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.16 E-value=0.00024 Score=56.02 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKG--LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
.+|-.+|+..-|.+.++.|..+|.+.++. +..++....++|.. ...++.+.|.++|+...+. +..+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~--------f~~~~~~ 72 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK--------FPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH--------HTT-HHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH--------CCCCHHH
Confidence 57889999999999999999999998742 22334444444443 3345677799999999985 6778888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR----STFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
|..-+.-+...++.+.|..+|++... . + |.. ..|...+.--.+.|+++. +..+.+.+.+.
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~-~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~----v~~v~~R~~~~ 136 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAIS-S-L-PKEKQSKKIWKKFIEFESKYGDLES----VRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCC-T-S-SCHHHCHHHHHHHHHHHHHHS-HHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH-h-c-CchhHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHH
Confidence 99999999999999999999999988 3 3 443 489999999999999999 99999998886
No 115
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00034 Score=58.48 Aligned_cols=204 Identities=9% Similarity=0.031 Sum_probs=127.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD- 92 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 92 (246)
++....+-.-|.++...|+..+-..+=.++.+..+....+|-++.--|...|+.++|.+.|.+.... .|.
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l---------D~~f 345 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL---------DPTF 345 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc---------Cccc
Confidence 3444444444555555555555554444554445556666666666666667777777777665543 333
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR-STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
...|-..-..|+-.|..|+|+..+....+ +.|.. -.+--+..-|.+.++.+. |.+.|.+.... .+-
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAar---l~~G~hlP~LYlgmey~~t~n~kL----Ae~Ff~~A~ai------~P~ 412 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAAR---LMPGCHLPSLYLGMEYMRTNNLKL----AEKFFKQALAI------APS 412 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHH---hccCCcchHHHHHHHHHHhccHHH----HHHHHHHHHhc------CCC
Confidence 23566666667777777777777666555 22221 112224445666777888 88888777653 334
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhCC---CCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMWP---DSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
|+...+-+--.....+.+.+|..+|+.... ......+ ....+++.|-.+|.+.+.+++|+..++.-..
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 556667776666678899999999987651 1100010 1222789999999999999999999987654
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=0.00012 Score=49.40 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchh
Q 043380 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV 211 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (246)
+..+...+...|++++ |.+.|+.+.... |+-......+..+..++...|+++.|...|+.+....++....
T Consensus 5 ~~~~~~~~~~~~~~~~----A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-- 75 (119)
T TIGR02795 5 YYDAALLVLKAGDYAD----AIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA-- 75 (119)
T ss_pred HHHHHHHHHHcCCHHH----HHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc--
Confidence 3444555555566666 666665555431 0111112344445555555666666666666554322211100
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 212 QEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
..++..+..++...|+.++|.+.++++.+..
T Consensus 76 -~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 76 -PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred -cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 0134445555555666666666665555443
No 117
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00049 Score=56.71 Aligned_cols=189 Identities=13% Similarity=0.019 Sum_probs=134.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHcc
Q 043380 27 SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 106 (246)
+.-.|+.-.|..-|+..-+..+.+...|--+-.+|....+.++....|.+..... +-|..+|..=-..+.-.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--------p~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD--------PENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC--------CCCCchhHhHHHHHHHH
Confidence 4456788888888877654334444447778888888899999999999888751 23455666666666667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHh
Q 043380 107 KDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~ 185 (246)
+++++|..=|+...+ +.|. ...|-.+--+.-+.+.+.+ +...|++.+++ ++-.+..|+-....+..
T Consensus 408 ~q~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~----~m~~Fee~kkk------FP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 408 QQYEEAIADFQKAIS---LDPENAYAYIQLCCALYRQHKIAE----SMKTFEEAKKK------FPNCPEVYNLFAEILTD 474 (606)
T ss_pred HHHHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh------CCCCchHHHHHHHHHhh
Confidence 889999999998887 6565 5566666667777889999 99999999886 66667888989999999
Q ss_pred cCChhHHhhHHHhhCCCCCC------CCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 186 RVDYDIVKSPYRRMWPDSTG------TISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+++++|.+.|+......+. ...|-+ .-.++- +--.+++..|.++++.-.+
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV----~Ka~l~-~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLV----HKALLV-LQWKEDINQAENLLRKAIE 531 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhh----hhhHhh-hchhhhHHHHHHHHHHHHc
Confidence 99999999999976543322 122222 111211 1234888888888876654
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0013 Score=50.24 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=87.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 043380 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137 (246)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 137 (246)
...|+..+++++|++...... +++ ....=+..+.+..+++-|.+.++.|.. + -+..|.+.|..
T Consensus 115 a~i~~~~~~~deAl~~~~~~~---------~lE----~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~ 177 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE---------NLE----AAALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQ 177 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc---------hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHH
Confidence 344566777777777666511 122 222223334455677777777777777 2 13455555555
Q ss_pred HHHh----cCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhh
Q 043380 138 ALLY----SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQE 213 (246)
Q Consensus 138 ~~~~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (246)
++.+ .+.+.+ |.-+|++|.++ ..|+..+.+.+..++...|++++|+.+++....+..+ .|+.
T Consensus 178 awv~la~ggek~qd----AfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~--dpet-- 243 (299)
T KOG3081|consen 178 AWVKLATGGEKIQD----AFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK--DPET-- 243 (299)
T ss_pred HHHHHhccchhhhh----HHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC--CHHH--
Confidence 4444 345666 77777777663 6777777777777777788888888777776654432 1221
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 214 EAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 214 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.-|.++.+.-...+.+-..+.+.+++.
T Consensus 244 -L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 -LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 234444444333333444455555443
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0024 Score=48.76 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=117.6
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
..-+...-..-...|+..|++++|++...... .......+ ...+.+..+.+.|...+++|.+. -+
T Consensus 104 ~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~---~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i----------de 168 (299)
T KOG3081|consen 104 DGSNLIDLLLAAIIYMHDGDFDEALKALHLGE---NLEAAALN--VQILLKMHRFDLAEKELKKMQQI----------DE 168 (299)
T ss_pred cchhHHHHHHhhHHhhcCCChHHHHHHHhccc---hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc----------ch
Confidence 33333333334557889999999999887632 22222222 33456777899999999999985 45
Q ss_pred HHHHHHHHHHH----HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 93 IFTYATLLMGF----RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 93 ~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
..|.+-|..++ ...+...+|..+|++|-+ ...|+..+.+....++...|++++ |..++++...+
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~ee----Ae~lL~eaL~k------ 236 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEE----AESLLEEALDK------ 236 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHH----HHHHHHHHHhc------
Confidence 55666566665 445678999999999977 377999999999999999999999 99999999887
Q ss_pred CCcchhhHHHHHHHHHhcCCh-hHHhhHHHhhCCCC
Q 043380 169 LWPKPHLYVSMMHELAARVDY-DIVKSPYRRMWPDS 203 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~ 203 (246)
-.-++.+...+|-+-...|.. +-..+.+.+++...
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 234566666666665666654 55667777776543
No 120
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=0.0003 Score=47.45 Aligned_cols=102 Identities=8% Similarity=-0.065 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CCHH
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI-LDRS 130 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~ 130 (246)
.++-.+...+.+.|++++|.+.|.++.... .+.......+..+..++.+.|+++.|...|+.+.....-. ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccH
Confidence 355667777888999999999999998751 0111123467778899999999999999999988711111 1245
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+..+..++...|+++. |...++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~----A~~~~~~~~~~ 105 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEK----AKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHhCChHH----HHHHHHHHHHH
Confidence 67788889999999999 99999999886
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=0.001 Score=54.74 Aligned_cols=142 Identities=13% Similarity=0.013 Sum_probs=117.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMG 102 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~ 102 (246)
--.+...|+.++|+..+..+....+-|+.-+......+...++.++|.+.++.+... .|+ ....-++-.+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---------~P~~~~l~~~~a~a 383 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---------DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------CCCccHHHHHHHHH
Confidence 334557899999999999988777778888888999999999999999999999986 676 5677788899
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 043380 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182 (246)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~ 182 (246)
|.+.|++.+|..+++.... . .+-|+..|..|..+|...|+..+ +..-..+.
T Consensus 384 ll~~g~~~eai~~L~~~~~-~-~p~dp~~w~~LAqay~~~g~~~~----a~~A~AE~----------------------- 434 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLF-N-DPEDPNGWDLLAQAYAELGNRAE----ALLARAEG----------------------- 434 (484)
T ss_pred HHhcCChHHHHHHHHHHhh-c-CCCCchHHHHHHHHHHHhCchHH----HHHHHHHH-----------------------
Confidence 9999999999999999877 2 44568899999999999999998 66544443
Q ss_pred HHhcCChhHHhhHHHhhCCCC
Q 043380 183 LAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~ 203 (246)
|...|+++.|...+....+..
T Consensus 435 ~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 435 YALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHhCCCHHHHHHHHHHHHHhc
Confidence 456788888888888776543
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0028 Score=48.12 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHH----hC-CCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHH
Q 043380 31 QRIDEAYQILESVE----KG-LEPDSLS-YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104 (246)
Q Consensus 31 g~~~~a~~~~~~~~----~~-~~~~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~ 104 (246)
.+.++.++++.++. +| ..++..+ |.-++-+....++.+.|...++++..+ ++-+...--.=-.-+-
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lE 97 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLE 97 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHH
Confidence 45666666665542 23 4455433 445555556667777777777777665 2222221111111123
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHH
Q 043380 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184 (246)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~ 184 (246)
..|++++|.++++.+.+ .+ +.|..+|--=+...-..|.-.+ |++-+....+. +..|...|.-+-..|.
T Consensus 98 a~~~~~~A~e~y~~lL~-dd-pt~~v~~KRKlAilka~GK~l~----aIk~ln~YL~~------F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLE-DD-PTDTVIRKRKLAILKAQGKNLE----AIKELNEYLDK------FMNDQEAWHELAEIYL 165 (289)
T ss_pred HhhchhhHHHHHHHHhc-cC-cchhHHHHHHHHHHHHcCCcHH----HHHHHHHHHHH------hcCcHHHHHHHHHHHH
Confidence 35667777777777766 32 2234444444444444555556 66666666664 5666677777777777
Q ss_pred hcCChhHHhhHHHhhCC
Q 043380 185 ARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 185 ~~g~~~~a~~~~~~~~~ 201 (246)
..|++++|--.++++.-
T Consensus 166 ~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHhHHHHHHHHHHHHHH
Confidence 77777777777776653
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.02 E-value=0.0037 Score=52.38 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=123.3
Q ss_pred cchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCh
Q 043380 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSI 145 (246)
Q Consensus 67 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~ 145 (246)
.+.....++++... ....|+ .+|..+|+.-.+..-++.|..+|.+.++ .+..+ +..+++++|.-||. ++.
T Consensus 347 ~~~~~~~~~~ll~~------~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~ 417 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKI------EDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDK 417 (656)
T ss_pred hhhhHHHHHHHHhh------hccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CCh
Confidence 56677778877765 134444 3788899999999999999999999999 77777 68889999998875 567
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh
Q 043380 146 KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN 225 (246)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 225 (246)
+. |.++|+.=.+. ..-++.-....++-+.+.++-..+..+|++..... ++++-....|..+++-=+.
T Consensus 418 ~~----AfrIFeLGLkk------f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~---l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 418 ET----AFRIFELGLKK------FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV---LSADKSKEIWDRMLEYESN 484 (656)
T ss_pred hH----HHHHHHHHHHh------cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc---CChhhhHHHHHHHHHHHHh
Confidence 77 99999987765 44444556778888899999999999999998662 5666556689999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 043380 226 DGQVDLALDKLSNTIT 241 (246)
Q Consensus 226 ~g~~~~a~~~~~~m~~ 241 (246)
-|+...+.++-+++..
T Consensus 485 vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRFT 500 (656)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998887754
No 124
>PLN02789 farnesyltranstransferase
Probab=98.02 E-value=0.0045 Score=49.73 Aligned_cols=203 Identities=11% Similarity=-0.008 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHhccCCCCCCCCCcc
Q 043380 16 NTIVMNAVIEASREAQ-RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL--DVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+..+|+..-.++...| .++++++.++.+....+.+..+|+..-..+.+.+.. +++.++++++.+. -+-|
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkN 141 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKN 141 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------Cccc
Confidence 3445665555666667 579999999988755567777888766666666653 6788999999875 2446
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CChhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS---GSIKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
..+|+....++.+.|+++++++.++++.+ .+. -+...|+.....+.+. |..+.+...+..+....... .
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~-~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~------~ 213 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLE-EDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA------N 213 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh------C
Confidence 78999999999999999999999999998 432 2356676665555544 22321111167777666664 2
Q ss_pred CcchhhHHHHHHHHHhc----CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcC------------------
Q 043380 170 WPKPHLYVSMMHELAAR----VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDG------------------ 227 (246)
Q Consensus 170 ~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------------------ 227 (246)
+-|...|+-+...+... ++..+|.+.+.+....++ .. ..+...|++.|+...
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~---~s---~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS---NH---VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC---Cc---HHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 34567888888888773 445668888888655331 11 126778899888643
Q ss_pred ChhHHHHHHHHHH
Q 043380 228 QVDLALDKLSNTI 240 (246)
Q Consensus 228 ~~~~a~~~~~~m~ 240 (246)
..++|.+++..+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 2367888888773
No 125
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.97 E-value=0.00036 Score=51.72 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=86.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccC----
Q 043380 37 YQILESVEKGLEPDSLSYNILISACIKT-----KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK---- 107 (246)
Q Consensus 37 ~~~~~~~~~~~~~~~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---- 107 (246)
...|+... +...|-.+|..+++.|.+. |..+=....+..|.+- |++-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~-~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-------gv~kDL~~Y~~LLDvFPKg~fvp~ 105 (228)
T PF06239_consen 34 EELFERAP-GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-------GVEKDLEVYKALLDVFPKGKFVPR 105 (228)
T ss_pred HHHHHHHh-hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-------CCcccHHHHHHHHHhCCCCCcccc
Confidence 34444442 2367888899999988764 5556666677777777 89999999999999975421
Q ss_pred ------------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 108 ------------DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 108 ------------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+-+-|.+++++|.. .|+.||..++..++..+++.+..-.+ .+++.-.|.+-
T Consensus 106 n~fQ~~F~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p~~K---~~rmmYWmpkf 168 (228)
T PF06239_consen 106 NFFQAEFMHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHPMKK---YRRMMYWMPKF 168 (228)
T ss_pred cHHHHHhccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHHHHH---HHHHHHHHHHH
Confidence 23679999999999 99999999999999999998876554 55555555543
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00016 Score=45.98 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCch
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (246)
++..+...+...|++++ |..+++...+. ...+...+..+...+...+++++|.+.++......+...
T Consensus 2 ~~~~~a~~~~~~~~~~~----A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDE----ALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--- 68 (100)
T ss_pred HHHHHHHHHHHHhcHHH----HHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---
Confidence 35567778888999999 99999998875 233447788889999999999999999998765432211
Q ss_pred hhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 211 VQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.++..+...+...|++++|...+....+..+
T Consensus 69 ---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 ---KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred ---hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 2678888999999999999999998876543
No 127
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0025 Score=49.65 Aligned_cols=195 Identities=16% Similarity=0.146 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
-+.+.+....+..++++|.+++..-...-+.+....+.+-.+|-...++..|-+.|+++... .|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---------~P~~~qYrl 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---------HPELEQYRL 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------ChHHHHHHH
Confidence 36677778888999999999998765444558888999999999999999999999999875 566554432
Q ss_pred H-HHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH--HhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 99 L-LMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL--LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 99 l-l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
- ...+-+++.+.+|+.+...|.. . |....-..-+.+- -..+++.. +..++++... +-+..+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D-~---~~L~~~~lqLqaAIkYse~Dl~g----~rsLveQlp~--------en~Ad~ 146 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLD-N---PALHSRVLQLQAAIKYSEGDLPG----SRSLVEQLPS--------ENEADG 146 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcC-C---HHHHHHHHHHHHHHhcccccCcc----hHHHHHhccC--------CCccch
Confidence 2 2345577889999999999987 2 3322222222222 23677888 7777776642 234555
Q ss_pred HHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 176 YVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.+..-....+.|+++.|.+-|+...+-+ | ..|-+ +||.-+--| +.|+.+.|.++..++.++|.
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvs-G-yqpll---AYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVS-G-YQPLL---AYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhc-C-CCchh---HHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 5666666778999999999999876532 3 45555 677665554 77899999999999999884
No 128
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=0.0012 Score=52.19 Aligned_cols=214 Identities=14% Similarity=0.084 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCC-C
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVE----KGLEP--DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG-F 89 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~ 89 (246)
...|+...+.|-..|++++|.+.|...- +.-.+ -...|.....+|.+. ++++|...+++....-.. .| .
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~---~G~~ 110 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE---AGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH---CT-H
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh---cCcH
Confidence 4467777888888999999999987652 11112 223455556665555 899999999887653000 01 1
Q ss_pred CccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc
Q 043380 90 HPDIFTYATLLMGFRHA-KDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 164 (246)
..-...+..+-..|-.. |++++|.+.|++..+. .+-.-. ..++..+...+.+.|++++ |.++|++......
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~----A~~~~e~~~~~~l 186 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE----AIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH----HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHhh
Confidence 12244788888889888 9999999999876551 231111 3457788889999999999 9999999987522
Q ss_pred CCCCCCcchh-hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh--cCChhHHHHHHHHH
Q 043380 165 SNPGLWPKPH-LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN--DGQVDLALDKLSNT 239 (246)
Q Consensus 165 ~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m 239 (246)
..+..+++.. .|...+-++...||+..|.+.+++.....+++.... ....-..|+.+|-. ...++.|+.-|+.+
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~-E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR-EYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH-HHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1122233342 334455577778999999999999876665544433 22256667777743 23345555555544
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.91 E-value=0.0023 Score=54.58 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=145.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHcc
Q 043380 27 SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 106 (246)
+...|+-++|.+....-.++-..+.+.|+.+.-.+....++++|.+.|...... -+-|...|.-|--.-++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQM 122 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHH
Confidence 344577888888887765555678889999888888889999999999999875 234566777776677888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHH-----
Q 043380 107 KDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM----- 180 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li----- 180 (246)
++++...+...+... ..|+ ...|..+..++--.|+... |..+.++..+.. ...|+...|....
T Consensus 123 Rd~~~~~~tr~~LLq---l~~~~ra~w~~~Avs~~L~g~y~~----A~~il~ef~~t~----~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQ---LRPSQRASWIGFAVAQHLLGEYKM----ALEILEEFEKTQ----NTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HhhhhHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhh----ccCCCHHHHHHHHHHHHH
Confidence 999999999998888 5566 5668899999999999999 999999998871 2357776665544
Q ss_pred -HHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 181 -HELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 181 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
......|..++|.+.+...++.- ..... .-..-...+.+.+++++|..++..++.+.+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~i----~Dkla--~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQI----VDKLA--FEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhHH----HHHHH--HhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 33556788888888888766432 22221 123345567889999999999999988765
No 130
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0035 Score=52.72 Aligned_cols=134 Identities=9% Similarity=-0.010 Sum_probs=102.5
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
+..+|...+..|--.|--.|++++|.+.|+.... +.|+ ...||-|-..++...+.++ |+..|++..+.
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~E----AIsAY~rALqL---- 493 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEE----AISAYNRALQL---- 493 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHH----HHHHHHHHHhc----
Confidence 4346777778888888889999999999999998 7787 7789999999999999999 99999999874
Q ss_pred CCCCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC----CCCchhhhHHHHHHHHHHHhcCChhHHHHH
Q 043380 167 PGLWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWPDSTG----TISPEVQEEAGHLLMEAALNDGQVDLALDK 235 (246)
Q Consensus 167 ~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 235 (246)
+|+- .+...|--+|...|.+++|.+.|-........ .-.+......|.+|=.+++..++.|-+.+.
T Consensus 494 ---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 494 ---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 6664 67778888999999999999888764411111 111111223688777777778877755554
No 131
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.88 E-value=0.00026 Score=52.42 Aligned_cols=104 Identities=11% Similarity=0.134 Sum_probs=82.1
Q ss_pred CccHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh------------hhhHH
Q 043380 90 HPDIFTYATLLMGFRH-----AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV------------VGLYA 152 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~------------~~~~a 152 (246)
..|..+|..++..|.+ .|..+-....+..|.+ .|+.-|..+|+.|++.+=+..-... -..-|
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 5788899999999964 4677888888999999 9999999999999998876332111 02229
Q ss_pred HHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCCh-hHHhhHHHhh
Q 043380 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY-DIVKSPYRRM 199 (246)
Q Consensus 153 ~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~ 199 (246)
++++++|... |+.||..|+..++..+++.+.. .+..++.-.|
T Consensus 123 i~lL~qME~~-----gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 123 IDLLEQMENN-----GVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHHHHc-----CCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999999998 9999999999999999988764 3444444333
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.0005 Score=56.20 Aligned_cols=102 Identities=12% Similarity=-0.020 Sum_probs=84.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
...+...|++++|++.|++..+..+.+...|..+..+|...|++++|...+++++.. -+.+...|..+-.+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHH
Confidence 456678899999999999887544667888999999999999999999999999986 233567888999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 136 (246)
...|++++|...|++..+ +.|+.......+
T Consensus 81 ~~lg~~~eA~~~~~~al~---l~P~~~~~~~~l 110 (356)
T PLN03088 81 MKLEEYQTAKAALEKGAS---LAPGDSRFTKLI 110 (356)
T ss_pred HHhCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 999999999999999988 557644444443
No 133
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.83 E-value=0.0083 Score=55.34 Aligned_cols=216 Identities=9% Similarity=-0.070 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CC-CC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEK---GL-EP--DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~-~~--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
..+.+...+...|++++|...+++... .. .+ -..++..+...+...|++++|...+++................
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 445666677789999999999987631 11 11 1234556667788899999999999887653110000000112
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCC--HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCC-NLILD--RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
...+..+...+...|++++|...+.+..... ...+. ...+..+...+...|+++. |.+.++......... +.
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~----A~~~l~~a~~~~~~~-~~ 647 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN----ARRYLNRLENLLGNG-RY 647 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHhcc-cc
Confidence 3345555666777899999999988765511 11122 3445556778888999999 999988876531100 11
Q ss_pred CcchhhH--HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 170 WPKPHLY--VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 170 ~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+..... ...+..+...|+.+.|...+........+. +......+..+..++...|+.++|...+++...
T Consensus 648 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 648 HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN--NHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc--chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000000 111234455677777777776654322111 110011234566667777888888777776654
No 134
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.0025 Score=46.37 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD--IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 50 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
....+..+...+...|++++|...|++..+. ...+. ...+..+...+.+.|++++|...+.+... ..|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p 103 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-------EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNP 103 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCc
Confidence 4456778888888999999999999999875 22222 46788899999999999999999999888 445
Q ss_pred C-HHHHHHHHHHHHhcCC
Q 043380 128 D-RSTFTAMVDALLYSGS 144 (246)
Q Consensus 128 ~-~~~~~~li~~~~~~~~ 144 (246)
+ ...+..+...+...|+
T Consensus 104 ~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGE 121 (172)
T ss_pred ccHHHHHHHHHHHHHcCC
Confidence 5 6667777777877776
No 135
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00079 Score=53.48 Aligned_cols=190 Identities=12% Similarity=0.097 Sum_probs=121.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhcC-------CcchHHHHHHHHHhccCCCCCCCCCc
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISA--CIKTK-------KLDVTMPFNEQLKDNGQKCSSGGFHP 91 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~--~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~p 91 (246)
-.|+--|.+.+++.+|..+..++. +.++.-| ++.+ ++..| ...-|..+|.-.-++ +.+.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~---PttP~Ey--ilKgvv~aalGQe~gSreHlKiAqqffqlVG~S-------a~ec 356 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLD---PTTPYEY--ILKGVVFAALGQETGSREHLKIAQQFFQLVGES-------ALEC 356 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcC---CCChHHH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc-------cccc
Confidence 456667889999999999988875 3333222 2222 22222 334465555554444 3443
Q ss_pred cHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 92 DIF-TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 92 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
|.. --.++.+++.-..++++++-.++.++. .=..-|.+.| .+..+++..|++.+ |+++|-.+... .++
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~e----aEelf~~is~~-----~ik 425 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVE----AEELFIRISGP-----EIK 425 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHH----HHHHHhhhcCh-----hhh
Confidence 322 334556666666788999999998888 4232334444 48889999999999 99998777553 333
Q ss_pred cchhhHHH-HHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 171 PKPHLYVS-MMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 171 p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
|..+|.+ |.++|.+.+.++.|+.++-.+...... ......+..-|-+.+.+--|-+.|+.+..
T Consensus 426 -n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~-------fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 426 -NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSER-------FSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred -hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 4556654 558889999999999988877533211 11334455667788888777777776654
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.74 E-value=0.011 Score=45.53 Aligned_cols=185 Identities=15% Similarity=0.025 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSY---NILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+..+-.....+.+.|++++|.+.|+.+....+-+...- -.+..++.+.+++++|...+++..+. ...-..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-------~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-------NPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CcCCCc
Confidence 33333445556778999999999999875333333332 34567888999999999999999987 111122
Q ss_pred HHHHHHHHHHHc--cC---------------CH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHH
Q 043380 94 FTYATLLMGFRH--AK---------------DL---QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYAL 153 (246)
Q Consensus 94 ~~~~~ll~~~~~--~~---------------~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~ 153 (246)
.-|...+.+.+. .+ |. .+|...|+.+.+ -|-.+.-..+ |.
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~----A~ 164 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTD----AT 164 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHH----HH
Confidence 344444444431 11 11 233344444444 3333333444 44
Q ss_pred HHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHH
Q 043380 154 CIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233 (246)
Q Consensus 154 ~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 233 (246)
..+..+... .-. ---.+..-|.+.|.+..|..=++.+...-++.... ..+...++.+|...|..++|.
T Consensus 165 ~rl~~l~~~--------la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~---~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 165 KRLVFLKDR--------LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT---RDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred HHHHHHHHH--------HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH---HHHHHHHHHHHHHcCChHHHH
Confidence 444443332 001 11145566777777777777777776544332221 125666777777777777777
Q ss_pred HHHHHHH
Q 043380 234 DKLSNTI 240 (246)
Q Consensus 234 ~~~~~m~ 240 (246)
++...+.
T Consensus 233 ~~~~~l~ 239 (243)
T PRK10866 233 KVAKIIA 239 (243)
T ss_pred HHHHHHh
Confidence 7766554
No 137
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.74 E-value=0.00016 Score=43.70 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=53.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHH
Q 043380 28 REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLM 101 (246)
Q Consensus 28 ~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~ 101 (246)
.+.|++++|.++|+.+....+-+...+..+..+|.+.|++++|..+++++... .|+...|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---------~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---------DPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---------GTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CcCHHHHHHHHh
Confidence 56799999999999987545668888889999999999999999999999986 677666666543
No 138
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.009 Score=48.63 Aligned_cols=151 Identities=8% Similarity=0.029 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHH
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 110 (246)
.++..|+.+-+..-+--+.++..|-.--+.+...+++++|.--|+..+.. -+-+...|.-|+.+|...|.+.
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHH
Confidence 33444444443332112333444444445555667777777777766653 1235567777777777777766
Q ss_pred HHHHH------------------------------------HHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHH
Q 043380 111 SLLEI------------------------------------VFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYAL 153 (246)
Q Consensus 111 ~a~~~------------------------------------~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~ 153 (246)
+|..+ ++.-.. +.|+ ....+.+...|...|..++ +.
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D----~i 458 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKD----II 458 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccch----HH
Confidence 65543 322222 4466 5567778888899999999 99
Q ss_pred HHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 154 CIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 154 ~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
.+++.-... .||...-+.|-+.+...+.+++|++.|......+
T Consensus 459 ~LLe~~L~~-------~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 459 KLLEKHLII-------FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHhh-------ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999988764 6899999999999999999999999999887654
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.71 E-value=0.014 Score=51.68 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=57.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH--HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHcc
Q 043380 29 EAQRIDEAYQILESVEKGLEPDSLSYNILISAC--IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 106 (246)
.++++.+|++....+.+. -|| ..|..++.++ .+.|+.++|..+++..... +.. |..|...+-.+|...
T Consensus 21 d~~qfkkal~~~~kllkk-~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-------~~~-D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK-HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGL-------KGT-DDLTLQFLQNVYRDL 90 (932)
T ss_pred hhHHHHHHHHHHHHHHHH-CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccC-------CCC-chHHHHHHHHHHHHH
Confidence 345556666666554321 233 2234444443 3456666666655555443 111 555666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh
Q 043380 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 147 (246)
++.++|..+|++... ..|+......+..+|++.+++..
T Consensus 91 ~~~d~~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQ---KYPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hhhhHHHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHH
Confidence 666666666666554 44555555556666666666555
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.70 E-value=0.0032 Score=45.64 Aligned_cols=95 Identities=7% Similarity=-0.112 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGL-EP--DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
....|..+...+...|++++|+..|+....-. .| ...+|..+-..+...|++++|...+++.... .+..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--------~~~~ 105 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--------NPFL 105 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCc
Confidence 35667788888889999999999998875211 12 2357888999999999999999999999875 2233
Q ss_pred HHHHHHHHHHHH-------ccCCHHHHHHHHHH
Q 043380 93 IFTYATLLMGFR-------HAKDLQSLLEIVFE 118 (246)
Q Consensus 93 ~~~~~~ll~~~~-------~~~~~~~a~~~~~~ 118 (246)
..++..+...+. ..|+++.|...+++
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 456666666666 77887765555543
No 141
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.70 E-value=0.0016 Score=44.63 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
|..++.++|.++++.|+++....+++..- |+.++... ..+. .. ......|+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W-gI~~~~~~---------~~~~----------~~------~~spl~Pt~~l 54 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW-GIDVNGKK---------KEGD----------YP------PSSPLYPTSRL 54 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc-CCCCCCcc---------ccCc----------cC------CCCCCCCCHHH
Confidence 34566666667777777666666665543 22222100 0000 11 12367899999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 144 (246)
..+++.+|+.++++..|+++.+...+..++..+..+|..|+.......+
T Consensus 55 L~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 55 LIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998888988889999999997666554
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0042 Score=45.18 Aligned_cols=116 Identities=10% Similarity=0.025 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCC-C-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEK-GLE-P-DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~-~-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
....+..+...+...|++++|...|++... .-. + ....+..+...+.+.|++++|...+.+.... .+-+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------NPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cccc
Confidence 344677788888899999999999988752 112 2 2467888999999999999999999999885 2234
Q ss_pred HHHHHHHHHHHHccCC--------------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 043380 93 IFTYATLLMGFRHAKD--------------LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~--------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 144 (246)
...+..+...+...|+ +++|.+++++... ..|+. |..++..+...|+
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~---~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR---LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh---hCchh--HHHHHHHHHhcCc
Confidence 5567777777777766 3556666666555 33333 5556665555544
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.70 E-value=0.0014 Score=53.66 Aligned_cols=90 Identities=8% Similarity=-0.053 Sum_probs=78.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 043380 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMV 136 (246)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 136 (246)
...+...|++++|.+.|.+.++. -+-+...|..+..+|.+.|++++|...+++... +.|+ ...|..+.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg 77 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHH
Confidence 34567789999999999999986 234567888999999999999999999999988 5565 77888899
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+|...|++++ |...|+...+.
T Consensus 78 ~~~~~lg~~~e----A~~~~~~al~l 99 (356)
T PLN03088 78 TACMKLEEYQT----AKAALEKGASL 99 (356)
T ss_pred HHHHHhCCHHH----HHHHHHHHHHh
Confidence 99999999999 99999999875
No 144
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.70 E-value=0.00096 Score=45.74 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHh--------------CCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHH
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKS--------------CCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--------------~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 157 (246)
|..++.++|.++++.|+.+....+++..-. .....||..+..+++.+|+..+++.. |.++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~----al~~vd 76 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFS----ALKLVD 76 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHH----HHHHHH
Confidence 567899999999999999999998876422 13356999999999999999999999 999999
Q ss_pred HHHHhhcCCCCCCcchhhHHHHHHHHHhcCC
Q 043380 158 EIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188 (246)
Q Consensus 158 ~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 188 (246)
...+.+ ++..+..+|..|+.-....-+
T Consensus 77 ~fs~~Y----~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 77 FFSRKY----PIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHc----CCCCCHHHHHHHHHHHHHhcC
Confidence 999985 577778999999977665544
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.013 Score=44.65 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=123.8
Q ss_pred cCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 13 WKLNT-IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS-ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 13 ~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
..++. ..|.-++-+....|+.+.|...++++...+ |...-...|=. -+-..|++++|.++|+.+.+. -+
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--------dp 117 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--------DP 117 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--------Cc
Confidence 33443 345666777788899999999999998656 43322222211 123478899999999999986 25
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
.|.++|--=+...-..|+.-+|.+-+....+ .+..|...|.-+-..|...|+++. |.-+++++.-. .
T Consensus 118 t~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~k----A~fClEE~ll~-------~ 184 (289)
T KOG3060|consen 118 TDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEK----AAFCLEELLLI-------Q 184 (289)
T ss_pred chhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHc-------C
Confidence 5777888878888788888888888887777 277889999999999999999999 99999999875 4
Q ss_pred cch-hhHHHHHHHHHhc---CChhHHhhHHHhhCCCC
Q 043380 171 PKP-HLYVSMMHELAAR---VDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 171 p~~-~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 203 (246)
|-. .-+..+...+.-. .+...+.+++.+..+.+
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 443 4444444444443 45678888888877544
No 146
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.012 Score=49.89 Aligned_cols=201 Identities=14% Similarity=0.087 Sum_probs=128.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHH
Q 043380 22 AVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLM 101 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~ 101 (246)
+=++-+...|++++|......+..+.+.+...+..=+-+..+.+++++|+.+.+.-.. ...+.+-+ +=.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---------~~~~~~~~--fEK 85 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---------LLVINSFF--FEK 85 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---------hhhcchhh--HHH
Confidence 4466777889999999999998866666777788888888889999999865554221 11111111 244
Q ss_pred HHH--ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc---------------
Q 043380 102 GFR--HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC--------------- 164 (246)
Q Consensus 102 ~~~--~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~--------------- 164 (246)
+|| +.+..++|+..++-... .|..+...-...+-+.|++++ |+++|+.+.+...
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~yde----aldiY~~L~kn~~dd~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDE----ALDIYQHLAKNNSDDQDEERRANLLAVA 156 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHH----HHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 443 67888888888874333 234455556667778888888 8888888855411
Q ss_pred --------CCCCCCcchhhHHH---HHHHHHhcCChhHHhhHHHhh--------CCCCCC--CCCchhhhHHHHHHHHHH
Q 043380 165 --------SNPGLWPKPHLYVS---MMHELAARVDYDIVKSPYRRM--------WPDSTG--TISPEVQEEAGHLLMEAA 223 (246)
Q Consensus 165 --------~~~~~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~~--------~~~~~~--~~~~~~~~~~~~~li~~~ 223 (246)
......| ..+|.. ....+...|++.+|+++++.. ...+.. .+...++ .+---|.-.+
T Consensus 157 a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~-~IrvQlayVl 234 (652)
T KOG2376|consen 157 AALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN-PIRVQLAYVL 234 (652)
T ss_pred HhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH-HHHHHHHHHH
Confidence 0011223 223433 345567789999999999987 222111 0111111 1223355667
Q ss_pred HhcCChhHHHHHHHHHHhhcc
Q 043380 224 LNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~g~ 244 (246)
-..|+.++|.+++..+.++.+
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcC
Confidence 789999999999998887654
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.0074 Score=51.78 Aligned_cols=139 Identities=9% Similarity=0.002 Sum_probs=97.5
Q ss_pred cccCcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCc--------chHHHHHHHH
Q 043380 11 EHWKLNTIVMNAVIEASREA-----QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL--------DVTMPFNEQL 77 (246)
Q Consensus 11 ~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~--------~~a~~~~~~m 77 (246)
...+.|...|...+.+.... ++.+.|..+|++..+.-+-+...|..+..++.....+ ..+.+...+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44678889999999986543 2377899999987643334455566554444332222 2233333332
Q ss_pred HhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHH
Q 043380 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157 (246)
Q Consensus 78 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 157 (246)
... .....+...|..+--.....|++++|...+++... +.|+...|..+...+...|+.++ |.+.++
T Consensus 411 ~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~e----A~~~~~ 477 (517)
T PRK10153 411 VAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRL----AADAYS 477 (517)
T ss_pred hhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHH----HHHHHH
Confidence 221 01233456787776666778999999999999999 55888899999999999999999 999999
Q ss_pred HHHHh
Q 043380 158 EIVKR 162 (246)
Q Consensus 158 ~m~~~ 162 (246)
+....
T Consensus 478 ~A~~L 482 (517)
T PRK10153 478 TAFNL 482 (517)
T ss_pred HHHhc
Confidence 98765
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=0.00023 Score=45.14 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=60.8
Q ss_pred cCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhc
Q 043380 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYS 142 (246)
Q Consensus 64 ~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 142 (246)
.|+++.|+.+++++.+.. ...|+...+..+..+|.+.|++++|..+++. .. ..|+ ......+..+|...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHC------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHh
Confidence 578999999999999871 1012455666689999999999999999988 33 2233 34444668899999
Q ss_pred CChhhhhhHHHHHHHH
Q 043380 143 GSIKVVGLYALCIFGE 158 (246)
Q Consensus 143 ~~~~~~~~~a~~~~~~ 158 (246)
|++++ |++++++
T Consensus 72 ~~y~e----Ai~~l~~ 83 (84)
T PF12895_consen 72 GKYEE----AIKALEK 83 (84)
T ss_dssp T-HHH----HHHHHHH
T ss_pred CCHHH----HHHHHhc
Confidence 99999 9999875
No 149
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.62 E-value=0.032 Score=47.89 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=91.7
Q ss_pred CccHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 90 HPDIFT--YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 90 ~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
+|+... +--+...|-+.|+++.|+..++.... -+|+ ...|..=.+.+...|++++ |...+++..+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~e----Aa~~l~ea~el---- 434 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDE----AAAWLDEAQEL---- 434 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHH----HHHHHHHHHhc----
Confidence 444443 34456667788888888888888766 5566 4556666788888888888 88888888775
Q ss_pred CCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHH---HHHHHhcCChhHHHHHHHHHHh
Q 043380 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLL---MEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 167 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~ 241 (246)
-.||...=..-..-..++.+.++|.++.......+.+.+..-....+...+ ..+|.+.|++..|++-|..+-+
T Consensus 435 --D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 435 --DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred --cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 245555555666777788888888888888776554333322222222222 2357788888888777766543
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.0036 Score=45.35 Aligned_cols=95 Identities=9% Similarity=0.030 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP--DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 50 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
....|..+...+...|++++|...|++.... ...| ...+|..+-..+...|++++|...++.... +.|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-------~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~ 103 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-------EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNP 103 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCc
Confidence 4566778888888899999999999999875 2122 235888999999999999999999999888 345
Q ss_pred C-HHHHHHHHHHHH-------hcCChhhhhhHHHHHHHH
Q 043380 128 D-RSTFTAMVDALL-------YSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 128 ~-~~~~~~li~~~~-------~~~~~~~~~~~a~~~~~~ 158 (246)
+ ..++..+...+. ..|+++. |+..+++
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~----A~~~~~~ 138 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEI----AEAWFDQ 138 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHH----HHHHHHH
Confidence 4 555666666666 7778776 5555554
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=0.0003 Score=44.61 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHH
Q 043380 107 KDLQSLLEIVFEMKSCCNLIL---DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHE 182 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~ 182 (246)
|+++.|..+++.+.+ ..| +...+..+..+|.+.|++++ |..+++.. + ..| +......+..+
T Consensus 3 ~~y~~Ai~~~~k~~~---~~~~~~~~~~~~~la~~~~~~~~y~~----A~~~~~~~-~-------~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 3 GNYENAIKYYEKLLE---LDPTNPNSAYLYNLAQCYFQQGKYEE----AIELLQKL-K-------LDPSNPDIHYLLARC 67 (84)
T ss_dssp T-HHHHHHHHHHHHH---HHCGTHHHHHHHHHHHHHHHTTHHHH----HHHHHHCH-T-------HHHCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH---HCCCChhHHHHHHHHHHHHHCCCHHH----HHHHHHHh-C-------CCCCCHHHHHHHHHH
Confidence 455555555555555 222 22233335555555555555 55555551 1 111 11222233455
Q ss_pred HHhcCChhHHhhHHH
Q 043380 183 LAARVDYDIVKSPYR 197 (246)
Q Consensus 183 ~~~~g~~~~a~~~~~ 197 (246)
|...|++++|.++++
T Consensus 68 ~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 68 LLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHTT-HHHHHHHHH
T ss_pred HHHhCCHHHHHHHHh
Confidence 555555555555554
No 152
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.58 E-value=0.0018 Score=56.26 Aligned_cols=123 Identities=13% Similarity=0.142 Sum_probs=82.5
Q ss_pred hhhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccC
Q 043380 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQ 82 (246)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 82 (246)
+.++.++.++++.+.. -..+.+......+.+|+.+++.++.. +.-..-|..+...|+..|+++-|+++|-+.-
T Consensus 720 ~q~daainhfiea~~~--~kaieaai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---- 792 (1636)
T KOG3616|consen 720 GQLDAAINHFIEANCL--IKAIEAAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEAD---- 792 (1636)
T ss_pred HhHHHHHHHHHHhhhH--HHHHHHHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcc----
Confidence 3455666666655443 34566777888999999999988731 2333346777888889999999988886632
Q ss_pred CCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh
Q 043380 83 KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 83 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 147 (246)
.++-.|..|.++|+|++|.++-.+... -..+...|-+-..-+-+.|++.+
T Consensus 793 ------------~~~dai~my~k~~kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 793 ------------LFKDAIDMYGKAGKWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred ------------hhHHHHHHHhccccHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhh
Confidence 345667888899999888887665433 23334555555555556666666
No 153
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.57 E-value=0.033 Score=51.49 Aligned_cols=211 Identities=13% Similarity=0.053 Sum_probs=132.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCHH--HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLE-------PDSL--SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 91 (246)
......+...|++++|..+++....... +... ....+-..+...|++++|...+++....- . .+..+
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~---~~~~~ 488 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-P---LTWYY 488 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C---CccHH
Confidence 3445556678999999999987642111 1111 11222344567899999999999987630 0 00000
Q ss_pred -cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCC-CCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 92 -DIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNL-ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 92 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~-~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
-....+.+...+...|++++|...+.+.... .|- .+...++..+...+...|+++. |...+++........
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~----A~~~~~~al~~~~~~ 564 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQA----AYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHh
Confidence 1234566666778899999999998887641 111 1112345666778889999999 999988866541110
Q ss_pred CCCC--c-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 167 PGLW--P-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 167 ~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+.. | ....+..+...+...|++++|...+++....... ..+.....++..+...+...|++++|.+.+.....
T Consensus 565 -~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 565 -HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN-YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred -ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc-cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 1 2334555666778889999999999876532111 11111122566677788899999999999887754
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0096 Score=47.08 Aligned_cols=181 Identities=10% Similarity=0.038 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD- 128 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~- 128 (246)
.|.-.-+.|-..+++++|.+.|.+.-....+. .....-...|.....+|.+. ++++|...+++..+. .|- |+
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~ 112 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQ 112 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHH
Confidence 35555566677788888888887764431110 01112233566666666555 888888877765441 222 22
Q ss_pred -HHHHHHHHHHHHhc-CChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC-
Q 043380 129 -RSTFTAMVDALLYS-GSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG- 205 (246)
Q Consensus 129 -~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 205 (246)
...+..+...|-.. |+++. |.+.|++...-........--...+..+...+.+.|++++|.++|+++......
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~----Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEK----AIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 44677778888888 89999 999999877653211111112356778889999999999999999987643211
Q ss_pred -CCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 206 -TISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 206 -~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
........ .|-..+-++...|++-.|.+.|++....
T Consensus 189 ~l~~~~~~~-~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 189 NLLKYSAKE-YFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp CTTGHHHHH-HHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred cccchhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12222221 2333455777789999999999987654
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.051 Score=48.40 Aligned_cols=210 Identities=13% Similarity=0.079 Sum_probs=137.5
Q ss_pred cCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 15 LNTIVMNAVIEAS--REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 15 ~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
|+. .|..++.++ .|.|+.++|..+++....--..|..|..++-.+|...+..++|..+|++..+. -|+
T Consensus 40 Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---------~P~ 109 (932)
T KOG2053|consen 40 PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---------YPS 109 (932)
T ss_pred CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---------CCc
Confidence 444 344555544 57899999999998876322448899999999999999999999999999976 688
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hhh-----hhhHHHHHHHHHHHhhcCC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS-IKV-----VGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-~~~-----~~~~a~~~~~~m~~~~~~~ 166 (246)
..-...+..+|+|.+++.+-.++=-++.+ .++-....|.+++..+...-. .+. ....|.+.++.+.+..
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~--- 184 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK--- 184 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC---
Confidence 88888899999999988765554444444 133346666677766655432 111 1223667777776651
Q ss_pred CCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 167 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
|-.-+..=...-...+-..|++++|..++..=.-......++. .-+.-++.+...+++++..++-.++..+|.
T Consensus 185 -gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~----l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 185 -GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY----LENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred -CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH----HHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 2111222222233445668889999999843221111112222 344567777888888888888888877764
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.54 E-value=0.00036 Score=42.13 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=51.6
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 136 (246)
...|++++|.++|+++.+. .+-+...+..+..+|.+.|++++|..+++.+.. ..|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~---~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK---QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG---GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCcCHHHHHHHH
Confidence 4678999999999999986 233677888899999999999999999999988 557766665554
No 157
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.50 E-value=0.046 Score=46.16 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCH
Q 043380 33 IDEAYQILESVE--KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDL 109 (246)
Q Consensus 33 ~~~a~~~~~~~~--~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~ 109 (246)
.+....+++.+. ..+.|+ .+|...|+...+..-+..|..+|.+..+. +..+ .+..++++|.-|| .+|.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-------~r~~hhVfVa~A~mEy~c-skD~ 417 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-------KRTRHHVFVAAALMEYYC-SKDK 417 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-------cCCcchhhHHHHHHHHHh-cCCh
Confidence 445556666554 233444 56888889888988899999999999987 5555 7889999999887 5778
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch--hhHHHHHHHHHhc
Q 043380 110 QSLLEIVFEMKSCCNLILDRSTF-TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP--HLYVSMMHELAAR 186 (246)
Q Consensus 110 ~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~li~~~~~~ 186 (246)
+-|..+|+.=.+.. +|...| ...++-+...++-.. +..+|+....+ ++.||. ..|..+|.--..-
T Consensus 418 ~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~lNdd~N----~R~LFEr~l~s-----~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 418 ETAFRIFELGLKKF---GDSPEYVLKYLDFLSHLNDDNN----ARALFERVLTS-----VLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred hHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhCcchh----HHHHHHHHHhc-----cCChhhhHHHHHHHHHHHHhc
Confidence 99999999755523 454444 577888888999999 99999999987 677665 7899999999999
Q ss_pred CChhHHhhHHHhhC
Q 043380 187 VDYDIVKSPYRRMW 200 (246)
Q Consensus 187 g~~~~a~~~~~~~~ 200 (246)
|+...+.++-+++.
T Consensus 486 GdL~si~~lekR~~ 499 (656)
T KOG1914|consen 486 GDLNSILKLEKRRF 499 (656)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999888888765
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.49 E-value=0.0007 Score=40.48 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 23 VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
+...+.+.|++++|.+.|+++.+..+-+...+..+-.++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999998655668888999999999999999999999999875
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.48 E-value=0.0029 Score=49.32 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCC
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (246)
...|..-+..+.+.|++++ |...|+.+.+.+ |+-.-...++..+..+|...|++++|...|..+....+.+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~----Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDD----AIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3456666655577899999 999999999872 111111257788999999999999999999999854433211
Q ss_pred chhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 209 PEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
... ++-.+...+...|+.++|.++|+.+.+.-+
T Consensus 216 -~~d--Al~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 216 -AAD--AMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred -hhH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 111 566677788899999999999999987654
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.0041 Score=44.03 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-H
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-R 129 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~ 129 (246)
...-.+-..+...|++++|.++|+-+... .| +..-|-.|-.++-..|++++|...|..... +.|| +
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp 103 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY---------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAP 103 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCc
Confidence 34445555667889999999999998875 45 455777888888899999999999999888 4455 7
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..+-.+-.++...|+.+. |.+.|+.....
T Consensus 104 ~~~~~ag~c~L~lG~~~~----A~~aF~~Ai~~ 132 (157)
T PRK15363 104 QAPWAAAECYLACDNVCY----AIKALKAVVRI 132 (157)
T ss_pred hHHHHHHHHHHHcCCHHH----HHHHHHHHHHH
Confidence 778888999999999999 99999988776
No 161
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.44 E-value=0.0078 Score=54.00 Aligned_cols=183 Identities=12% Similarity=0.047 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHH
Q 043380 33 IDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSL 112 (246)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 112 (246)
...|+..|-+..+--..=...|..|-.-|+...+...|.+.|+...+. -.-|...+......|++..+++.|
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHH
Confidence 455555443322111223466888888888877888899999888875 133556788888999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHH
Q 043380 113 LEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192 (246)
Q Consensus 113 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 192 (246)
..+.-...++.....-..-|.-.--.|...++... |..-|+..... -+-|...|..+..+|.+.|++..|
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~----aV~~fQsALR~------dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG----AVCEFQSALRT------DPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhh----HHHHHHHHhcC------CchhHHHHHHHHHHHHhcCceehH
Confidence 98844333311111112223334446777888888 88888877664 234568899999999999999999
Q ss_pred hhHHHhhCCCCCCCCCchhhhHHHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 043380 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEA--ALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~ 241 (246)
.++|.+...- .|.. +|.....+ -+..|.+.+|...+..+..
T Consensus 616 lKvF~kAs~L-----rP~s---~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 616 LKVFTKASLL-----RPLS---KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHhhhhhHhc-----CcHh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999887643 3332 45554444 3457888888888877654
No 162
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0069 Score=42.70 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=55.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
+...++..+...|++++|..+...+.. ..| |...|..+|.+|...|+... |.++|+.+...-....|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~----A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAE----ALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHH----HHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHH----HHHHHHHHHHHHHHHhCcCcCH
Confidence 566778888899999999999999988 445 47889999999999999999 9999998866533334788887
Q ss_pred hhH
Q 043380 174 HLY 176 (246)
Q Consensus 174 ~~~ 176 (246)
.+-
T Consensus 137 ~~~ 139 (146)
T PF03704_consen 137 ETR 139 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 163
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.39 E-value=0.073 Score=45.95 Aligned_cols=115 Identities=11% Similarity=0.082 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCC--------------
Q 043380 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS-------------- 85 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------- 85 (246)
|...+......+-++.+..++++.. +.++..-+--|..+++.+++++|.+.+........-.+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYL---k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYL---KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHH---hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 4444444444555556666665543 23333466677778888888888888877765421000
Q ss_pred ---------------------CCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 043380 86 ---------------------SGGFHPDI--FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140 (246)
Q Consensus 86 ---------------------~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 140 (246)
..+.-+|. ..|++|..-|.+.|.+++|.++|++-.. . ..+..-|+.+.++|+
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~-~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ-T--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-h--heehhhHHHHHHHHH
Confidence 11222332 3688999999999999999999988776 2 234444444444444
No 164
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.39 E-value=0.0037 Score=54.40 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=10.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHH
Q 043380 96 YATLLMGFRHAKDLQSLLEIVF 117 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~ 117 (246)
|.-+...|+..|+++-|.++|.
T Consensus 768 y~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHH
Confidence 4444444555555555555544
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.018 Score=49.46 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=99.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-----cchHHHHHHHHHhccCCCCCCCCCccH-HHHHHHHHHHHcc--------CCHHH
Q 043380 46 GLEPDSLSYNILISACIKTKK-----LDVTMPFNEQLKDNGQKCSSGGFHPDI-FTYATLLMGFRHA--------KDLQS 111 (246)
Q Consensus 46 ~~~~~~~t~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~ 111 (246)
..+.|...|...+++.....+ .+.|..+|++..+. .|+- ..|..+..++... .+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---------EPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 446788999999998765433 66899999999986 6764 4555444433221 12334
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 112 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
+.+.............+...|.++...+...|++++ |...+++.... .|+...|..+...+...|+.++
T Consensus 403 a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~----A~~~l~rAl~L-------~ps~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 403 LSTELDNIVALPELNVLPRIYEILAVQALVKGKTDE----AYQAINKAIDL-------EMSWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred HHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHH----HHHHHHHHHHc-------CCCHHHHHHHHHHHHHcCCHHH
Confidence 444444433311233446778888777778899999 99999999886 5788899999999999999999
Q ss_pred HhhHHHhhCCCC
Q 043380 192 VKSPYRRMWPDS 203 (246)
Q Consensus 192 a~~~~~~~~~~~ 203 (246)
|...+++....+
T Consensus 472 A~~~~~~A~~L~ 483 (517)
T PRK10153 472 AADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHhcC
Confidence 999999876544
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.32 E-value=0.0051 Score=47.94 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR----STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
...|...+..+.+.|++++|...|+.+.. ..|+. ..+..+...|...|++++ |...|+.+.+.+ |+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~---~yP~s~~a~~A~y~LG~~y~~~g~~~~----A~~~f~~vv~~y---P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK---KYPDSTYQPNANYWLGQLNYNKGKKDD----AAYYFASVVKNY---PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCcchHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHC---CC
Confidence 34677777776778999999999999998 44653 467789999999999999 999999999862 12
Q ss_pred CCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
-......+..+...+...|+.++|..+++.+....
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 22234566667778889999999999999987654
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.31 E-value=0.021 Score=40.46 Aligned_cols=98 Identities=6% Similarity=-0.072 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
..-.+-.-+...|++++|..+|+.+-.--+-+..-|-.|--++-..|++.+|...|...... . +-|...+-.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-------~-~ddp~~~~~ 108 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-------K-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------C-CCCchHHHH
Confidence 33355566778999999999999986423456666777888888899999999999999986 2 346788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCC
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCN 124 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~ 124 (246)
+-.++...|+.+.|.+.|+......+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998877333
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0057 Score=53.90 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=99.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccC
Q 043380 28 REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107 (246)
Q Consensus 28 ~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 107 (246)
...|.+++|+.+|.+-++ |..|=..|-..|++++|.++-+.- ++ ..=..||..-..-+-..+
T Consensus 811 ieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~-DR---------iHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETK-DR---------IHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhc-cc---------eehhhhHHHHHHHHHhhc
Confidence 455677777777777653 334445566677777777654432 21 122346666666666777
Q ss_pred CHHHHHHHHHHHHhCCC-------------------CCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 108 DLQSLLEIVFEMKSCCN-------------------LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~-------------------~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
|.+.|++.|+.... .. -..|...|.-...-+-..|+.+. |+.+|...+.
T Consensus 873 Di~~AleyyEK~~~-hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda----Al~~Y~~A~D------- 940 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGV-HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA----ALSFYSSAKD------- 940 (1416)
T ss_pred cHHHHHHHHHhcCC-hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH----HHHHHHHhhh-------
Confidence 88888777764322 10 01223333333333344555555 5555555443
Q ss_pred CCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
|-++++..|-.|+.++|-.+.++-... . +...|.+.|-..|++.+|...|-+...
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esgd~-----A------AcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESGDK-----A------ACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcccH-----H------HHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 456777778888888888887764321 1 455678888888888888888876543
No 169
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.24 E-value=0.11 Score=44.86 Aligned_cols=169 Identities=9% Similarity=-0.022 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 132 (246)
.|-..+....+.+++......|+..... .-+.--...|...+.-....+-++.+..+|++..+ +.|. .-
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALra------LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~--~~ 172 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRA------LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPE--AR 172 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHh------CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHH--HH
Confidence 4555555556677777777777776654 01222334677788888888889999999999888 4444 47
Q ss_pred HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC-CCCcchhhHHHHHHHHHhcCChh---HHhhHHHhhCCCCCCCCC
Q 043380 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP-GLWPKPHLYVSMMHELAARVDYD---IVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 133 ~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~ 208 (246)
+-.|.-+++.+++++ |-+.+.....++.... ..+.+...|.-+-...++..+.- ....+++.+... .+
T Consensus 173 eeyie~L~~~d~~~e----aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r----ft 244 (835)
T KOG2047|consen 173 EEYIEYLAKSDRLDE----AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR----FT 244 (835)
T ss_pred HHHHHHHHhccchHH----HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc----Cc
Confidence 788899999999999 9988888776533221 22334456666666666554433 344445544322 22
Q ss_pred chhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 209 PEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
... ...|.+|.+-|++.|.+++|..+|++-..
T Consensus 245 Dq~-g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 245 DQL-GFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 222 33799999999999999999999887554
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.21 E-value=0.031 Score=37.96 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-hCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----HHH
Q 043380 23 VIEASREAQRIDEAYQILESVE-KGLEPD--SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD----IFT 95 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~-~~~~~~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~~~ 95 (246)
+-.++-..|+.++|+.+|++.. .|.... ...+-.+-+.+...|++++|..++++.... .|+ ...
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---------~p~~~~~~~l 77 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---------FPDDELNAAL 77 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCccccHHH
Confidence 4456677899999999998875 454433 334556777788899999999999988875 243 222
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 141 (246)
...+-.++...|+.++|...+-.... ++...|.--|..|+.
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 22333466788999999888876655 455567666666653
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.19 E-value=0.0023 Score=38.67 Aligned_cols=65 Identities=14% Similarity=-0.005 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHhc
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK-KLDVTMPFNEQLKDN 80 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~ 80 (246)
++.+|..+-..+.+.|++++|+..|++..+-.+.+...|..+-.+|...| ++++|.+.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46789999999999999999999998875433567888999999999999 799999999998764
No 172
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.19 E-value=0.057 Score=40.44 Aligned_cols=181 Identities=16% Similarity=0.119 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH--HHH
Q 043380 22 AVIEASREAQRIDEAYQILESVEKGLEP---DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI--FTY 96 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~--~~~ 96 (246)
.....+...|++++|.+.|+.+....+. -....-.+..++.+.|++++|...+++++.. -|+. .-+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~---------yP~~~~~~~ 80 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL---------YPNSPKADY 80 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------TT-TTHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCCcchhh
Confidence 3445567788888888888887632222 2234456677788888888888888888875 2332 223
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL---DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
...+.+.+......... ... ..... -...+..++.-|=.+.-..+ |...+..+... . .
T Consensus 81 A~Y~~g~~~~~~~~~~~-----~~~-~D~~~~~~A~~~~~~li~~yP~S~y~~~----A~~~l~~l~~~--------l-a 141 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGIL-----RSD-RDQTSTRKAIEEFEELIKRYPNSEYAEE----AKKRLAELRNR--------L-A 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHH------TT----HHHHHHHHHHHHHHHH-TTSTTHHH----HHHHHHHHHHH--------H-H
T ss_pred HHHHHHHHHHHhCccch-----hcc-cChHHHHHHHHHHHHHHHHCcCchHHHH----HHHHHHHHHHH--------H-H
Confidence 33333332211111111 000 00000 02235555666655655666 55555554443 0 1
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHH
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 233 (246)
..--.+..-|.+.|.+..|..-++.+.+.-++.... ..+...++.+|.+.|..+.|.
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~---~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA---EEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH---HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH---HHHHHHHHHHHHHhCChHHHH
Confidence 111235667888888888888888887654432222 226677888888888877443
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.0049 Score=36.74 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=49.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++ |...|+...+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~lg~~~~~~g~~~~----A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK---QDPDNPEAWYLLGRILYQQGRYDE----ALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC---CSTTHHHHHHHHHHHHHHTT-HHH----HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHH
Confidence 44667889999999999999999 3365 7788899999999999999 99999999876
No 174
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.019 Score=44.88 Aligned_cols=206 Identities=11% Similarity=0.114 Sum_probs=132.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCC--------C
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVE--KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQK--------C 84 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------~ 84 (246)
-+..+-+..-+...+.|+.+.|.+-|+... +|..|- ..||..+..| +.++++.|++...+++++|++ +
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 344555556666678999999999998764 676654 6688776654 557899999999999999854 1
Q ss_pred CCCCCCc----cH--H-------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhH
Q 043380 85 SSGGFHP----DI--F-------TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151 (246)
Q Consensus 85 ~~~~~~p----~~--~-------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~ 151 (246)
.-.|+.. |. - .||.-...+-+.++++.|.+-+..|-....-..|+.|.+.+.-.=. .+++.+
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~---- 294 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTE---- 294 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccc----
Confidence 1112111 11 1 2333333356789999999999888764556678888776544322 344555
Q ss_pred HHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHH-hcCCh
Q 043380 152 ALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAAL-NDGQV 229 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 229 (246)
..+-+.-+... .| ...||..++-.||+..-++.|-.++.+=...- -...+.+.|+ |+++++ ..-.+
T Consensus 295 g~~KLqFLL~~-------nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lT----yk~L~~Yly~-LLdaLIt~qT~p 362 (459)
T KOG4340|consen 295 GFEKLQFLLQQ-------NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLT----YKFLTPYLYD-LLDALITCQTAP 362 (459)
T ss_pred cHHHHHHHHhc-------CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchh----HHHhhHHHHH-HHHHHHhCCCCH
Confidence 55555555553 33 34899999999999999999988887643221 1112223444 344443 45567
Q ss_pred hHHHHHHHHH
Q 043380 230 DLALDKLSNT 239 (246)
Q Consensus 230 ~~a~~~~~~m 239 (246)
++|++-+..+
T Consensus 363 Eea~KKL~~L 372 (459)
T KOG4340|consen 363 EEAFKKLDGL 372 (459)
T ss_pred HHHHHHHHHH
Confidence 7777666554
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.15 E-value=0.014 Score=52.78 Aligned_cols=132 Identities=9% Similarity=0.040 Sum_probs=96.2
Q ss_pred CCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC
Q 043380 88 GFHPD-IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR-STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165 (246)
Q Consensus 88 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (246)
++.|+ ...+..|+..|...+++++|.++.+.-.+ ..|+. ..|-.+...+...++... +..+ .+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~----~~lv--~~l~~--- 92 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLND----SNLL--NLIDS--- 92 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhh----hhhh--hhhhh---
Confidence 55554 56899999999999999999999997777 55663 334444446777777777 5555 33332
Q ss_pred CCCCCcch-------------------hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc
Q 043380 166 NPGLWPKP-------------------HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND 226 (246)
Q Consensus 166 ~~~~~p~~-------------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 226 (246)
+..+. .++..+..+|-+.|+.+++..+++++.+.++.. +. +-|.+...|...
T Consensus 93 ---~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n----~~--aLNn~AY~~ae~ 163 (906)
T PRK14720 93 ---FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN----PE--IVKKLATSYEEE 163 (906)
T ss_pred ---cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc----HH--HHHHHHHHHHHh
Confidence 22222 677788889999999999999999998765322 11 678888888888
Q ss_pred CChhHHHHHHHHHHh
Q 043380 227 GQVDLALDKLSNTIT 241 (246)
Q Consensus 227 g~~~~a~~~~~~m~~ 241 (246)
++++|++++.....
T Consensus 164 -dL~KA~~m~~KAV~ 177 (906)
T PRK14720 164 -DKEKAITYLKKAIY 177 (906)
T ss_pred -hHHHHHHHHHHHHH
Confidence 99999998877654
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.14 E-value=0.0042 Score=37.47 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcC-ChhhhhhHHHHHHHHHHHh
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSG-SIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~-~~~~~~~~a~~~~~~m~~~ 162 (246)
+..+|..+-..+...|++++|...|++..+ +.|+ ...|..+..+|...| ++++ |.+.|+...+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~---~~p~~~~~~~~~g~~~~~~~~~~~~----A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE---LDPNNAEAYYNLGLAYMKLGKDYEE----AIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH---HSTTHHHHHHHHHHHHHHTTTHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCccHHH----HHHHHHHHHHc
Confidence 456888999999999999999999999999 5576 778899999999999 7999 99999988764
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.096 Score=42.11 Aligned_cols=149 Identities=9% Similarity=0.068 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHH-hCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHH
Q 043380 33 IDEAYQILESVE-KGLEPD-SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 33 ~~~a~~~~~~~~-~~~~~~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 110 (246)
+..|...|+..- ++..-| +.---++.+++.-...+|+++..+.....- +.-|...--.+..+++..|++.
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--------F~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--------FTNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCcchhhhHHHHHHHHhcChH
Confidence 455666666654 333322 233456666777778899999998888875 3334434445788999999999
Q ss_pred HHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh-hHHHHHHHHHhcCC
Q 043380 111 SLLEIVFEMKSCCNLILDRSTF-TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH-LYVSMMHELAARVD 188 (246)
Q Consensus 111 ~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 188 (246)
+|+++|-++.. ..++ |..+| +.|.++|.+++.++. ||+++-.+. ...+.. ....+...|.+.+.
T Consensus 411 eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~l----AW~~~lk~~--------t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 411 EAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQL----AWDMMLKTN--------TPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchH----HHHHHHhcC--------CchhHHHHHHHHHHHHHHHHH
Confidence 99999988866 4343 45555 567789999999999 987765542 223333 34455577888888
Q ss_pred hhHHhhHHHhhCCCC
Q 043380 189 YDIVKSPYRRMWPDS 203 (246)
Q Consensus 189 ~~~a~~~~~~~~~~~ 203 (246)
+--|-+.|+.++..+
T Consensus 477 FyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 477 FYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHhhhHHHccC
Confidence 887778888776443
No 178
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.054 Score=49.16 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
+|+.+..+-.+.|.+.+|.+-|-. ..|+..|..+++...+.|.+++-.+++.-.++. .-+|.+.+ .
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-------~~E~~id~--e 1171 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-------VREPYIDS--E 1171 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-------hcCccchH--H
Confidence 344444444444444444433321 123344555555555555555555555444443 33343332 4
Q ss_pred HHHHHHccCCHHHHH
Q 043380 99 LLMGFRHAKDLQSLL 113 (246)
Q Consensus 99 ll~~~~~~~~~~~a~ 113 (246)
|+-+|++.++..+.+
T Consensus 1172 Li~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELE 1186 (1666)
T ss_pred HHHHHHHhchHHHHH
Confidence 555555555554433
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.012 Score=45.75 Aligned_cols=97 Identities=12% Similarity=0.065 Sum_probs=76.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHH
Q 043380 26 ASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFR 104 (246)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~ 104 (246)
-..+.+++++|+..|.+...-.+-|.+-|..--.+|++.|.++.|.+=-+..+.. .|. ..+|..|-.+|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---------Dp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---------DPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---------ChHHHHHHHHHHHHHH
Confidence 3556788888888888766544667788888888999999998888777776653 554 458999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 043380 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134 (246)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 134 (246)
..|++++|.+.|+...+ +.|+-.+|-.
T Consensus 161 ~~gk~~~A~~aykKaLe---ldP~Ne~~K~ 187 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE---LDPDNESYKS 187 (304)
T ss_pred ccCcHHHHHHHHHhhhc---cCCCcHHHHH
Confidence 99999999999988888 7888666643
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.072 Score=42.85 Aligned_cols=106 Identities=10% Similarity=0.003 Sum_probs=77.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
+.+.-|.-+...|+...|.++-.+.+- ||..-|..-+.+++..++|++ -.++-.. + -++.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-----~dkrfw~lki~aLa~~~~w~e----L~~fa~s---k--------KsPI 238 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-----PDKRFWWLKIKALAENKDWDE----LEKFAKS---K--------KSPI 238 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC-----cHHHHHHHHHHHHHhcCCHHH----HHHHHhC---C--------CCCC
Confidence 444556666777888888877666543 788888999999999999998 5544221 1 1346
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHH
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDK 235 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 235 (246)
-|..++.+|.+.|+..+|..+...+. +..-+..|+++|++.+|.+.
T Consensus 239 GyepFv~~~~~~~~~~eA~~yI~k~~---------------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 239 GYEPFVEACLKYGNKKEASKYIPKIP---------------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred ChHHHHHHHHHCCCHHHHHHHHHhCC---------------hHHHHHHHHHCCCHHHHHHH
Confidence 78889999999999999988888742 34467777888888887665
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.01 Score=46.13 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=83.7
Q ss_pred HHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHH
Q 043380 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDAL 139 (246)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 139 (246)
..+.+++.+|...|.+.++. .+-|.+-|..=-.+|++.|.++.|.+=.+.... +.|. ..+|..|-.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHH
Confidence 45678999999999999985 345778888899999999999999998888877 6677 78999999999
Q ss_pred HhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 043380 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182 (246)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~ 182 (246)
...|++++ |.+.|+.... +.|+-.+|-.=+..
T Consensus 160 ~~~gk~~~----A~~aykKaLe-------ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 160 LALGKYEE----AIEAYKKALE-------LDPDNESYKSNLKI 191 (304)
T ss_pred HccCcHHH----HHHHHHhhhc-------cCCCcHHHHHHHHH
Confidence 99999999 9999988776 46776666554443
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.05 E-value=0.0015 Score=40.57 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
..+|+.+-..|...|++++|++.|++..+. .+... .-.|+ ..+++.+-.+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLG-DDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTT-THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356788888899999999999999888754 11100 12243 56899999999999999999999987654
No 183
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0014 Score=40.71 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
..+|+.+...|...|++++ |+..|++..+.....+.-.|+ ..++..+-.+|...|++++|.+++++..
T Consensus 5 a~~~~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDE----ALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHH----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678999999999999999 999999887652111112233 5778888899999999999999888753
No 184
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.02 E-value=0.14 Score=41.89 Aligned_cols=191 Identities=10% Similarity=0.024 Sum_probs=112.2
Q ss_pred hhHHHHhcccCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhC--C--CCCHHHHHHHHHHHHh---cCCcchHHHH
Q 043380 4 ENEIVNREHWKLNTI---VMNAVIEASREAQRIDEAYQILESVEKG--L--EPDSLSYNILISACIK---TKKLDVTMPF 73 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~--~--~~~~~t~~~li~~~~~---~~~~~~a~~~ 73 (246)
.+..++++-..|... +-..++-+|-..++++...++.+.+..- + .-....--...-++-+ .|+.++|..+
T Consensus 125 ~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i 204 (374)
T PF13281_consen 125 ELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI 204 (374)
T ss_pred HHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH
Confidence 344555555333222 2235566799999999999999999741 1 1111111122233345 7899999999
Q ss_pred HHHHHhccCCCCCCCCCccHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 043380 74 NEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH---------AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144 (246)
Q Consensus 74 ~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 144 (246)
+..+... .-.++..||..+-+.|-. ....++|.+.|.+--+ +.||..+--.+...+...|.
T Consensus 205 l~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 205 LLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCC
Confidence 9996554 456777788888887632 2236778888877665 44665443233333333343
Q ss_pred -hhhhhhHHHHHH---HHHH-HhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCC
Q 043380 145 -IKVVGLYALCIF---GEIV-KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207 (246)
Q Consensus 145 -~~~~~~~a~~~~---~~m~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (246)
.+. .....++- ..+. ++ + ...-..|-..+.+++.++.-.|+.++|.+..+.+....+..+
T Consensus 275 ~~~~-~~el~~i~~~l~~llg~k-g-~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 275 DFET-SEELRKIGVKLSSLLGRK-G-SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccc-hHHHHHHHHHHHHHHHhh-c-cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 222 00022222 2211 12 0 012235557788999999999999999999999886654333
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.94 E-value=0.064 Score=48.51 Aligned_cols=161 Identities=8% Similarity=-0.050 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHH
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYA 97 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 97 (246)
..|..|-..|+..-+...|.+-|+....--..+...+....+.|+...+++.|..+.-..-+. -+.-...+|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--------a~a~~~k~n 564 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--------APAFACKEN 564 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--------chHHHHHhh
Confidence 467777777877778888888888776433567788889999999999999999983333221 122233344
Q ss_pred HHHH--HHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-
Q 043380 98 TLLM--GFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP- 173 (246)
Q Consensus 98 ~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~- 173 (246)
.+-. .|...++..+|..-|+...+ ..|. ...|..+..+|..+|++.. |.++|.....- .|+.
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~----AlKvF~kAs~L-------rP~s~ 630 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSH----ALKVFTKASLL-------RPLSK 630 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceeh----HHHhhhhhHhc-------CcHhH
Confidence 4333 36788899999999998887 4454 6788999999999999999 99999888663 5554
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
..-.-..-..+..|.+.+|...++.+.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 221222233567888888888888765
No 186
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.88 E-value=0.01 Score=41.85 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
.....++..+...|++++|..+.+.+...-+.|...|..+|.+|...|+..+|.+.|+++...= ..+.|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l--~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL--REELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH--HHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH--HHHhCcCcCHHH
Confidence 4566677778889999999999999875557789999999999999999999999999885420 001277888765
No 187
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.14 Score=46.73 Aligned_cols=53 Identities=8% Similarity=-0.011 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 147 (246)
|...|.-++....+.|.|++-...+...++ ..-.|.. =+.||.+|++.+++.+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~i--d~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYI--DSELIFAYAKTNRLTE 1184 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccc--hHHHHHHHHHhchHHH
Confidence 444666777777777777776666665555 3333433 3456666777666665
No 188
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.032 Score=49.45 Aligned_cols=185 Identities=16% Similarity=0.084 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--C--------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCC
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEK--G--------LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS 85 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~--------~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 85 (246)
+..+|..+.+.|.+.+++|-|.--+..|++ | ..|+ .+=.-+--.....|.+++|+.+|.+-+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 444566666666666666666555555431 1 1121 11111112224456666666666665542
Q ss_pred CCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH----
Q 043380 86 SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK---- 161 (246)
Q Consensus 86 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~---- 161 (246)
..|-..|-..|.|++|.++-+.=.+ +.. ..||.....-+-.+++++. |++.|+.-..
T Consensus 830 -----------DLlNKlyQs~g~w~eA~eiAE~~DR---iHL-r~Tyy~yA~~Lear~Di~~----AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 830 -----------DLLNKLYQSQGMWSEAFEIAETKDR---IHL-RNTYYNYAKYLEARRDIEA----ALEYYEKAGVHAFE 890 (1416)
T ss_pred -----------HHHHHHHHhcccHHHHHHHHhhccc---eeh-hhhHHHHHHHHHhhccHHH----HHHHHHhcCChHHH
Confidence 3455566677888888887655433 222 4566667777777888888 8877764311
Q ss_pred ------hhcC----CCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 162 ------RVCS----NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 162 ------~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
.+.. .-.-.-|...|..--..+-..|++|.|..++...+ -|-++++..|-+|+.++
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------------D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------------DYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------------hhhhheeeEeeccCchH
Confidence 1000 00112334444444555566788888888888775 25667777788899999
Q ss_pred HHHHHHHH
Q 043380 232 ALDKLSNT 239 (246)
Q Consensus 232 a~~~~~~m 239 (246)
|-++-++-
T Consensus 957 Aa~iA~es 964 (1416)
T KOG3617|consen 957 AARIAEES 964 (1416)
T ss_pred HHHHHHhc
Confidence 88876653
No 189
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.78 E-value=0.34 Score=42.78 Aligned_cols=126 Identities=12% Similarity=-0.022 Sum_probs=98.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.|......+.+.+..++|...+.+... +.| ....|.-....+...|.+++ |.+.|.....- .|+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~E----A~~af~~Al~l-------dP~h 717 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEE----AKEAFLVALAL-------DPDH 717 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHH----HHHHHHHHHhc-------CCCC
Confidence 355566667788888888888888766 334 36677777788888999999 99999887764 4543
Q ss_pred -hhHHHHHHHHHhcCChhHHhh--HHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 174 -HLYVSMMHELAARVDYDIVKS--PYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 174 -~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
...+++..++...|+...|.. ++..+.+-++ ..+. +|..+-..+-+.|+.++|-+.|..-.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--~n~e----aW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--LNHE----AWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--CCHH----HHHHHHHHHHHccchHHHHHHHHHHH
Confidence 677888899999998888887 8888876543 2222 79999999999999999999997654
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.78 E-value=0.014 Score=35.57 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
-..|.+.+++++|.++++.+.. +.|+ ...+......+...|++.+ |.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~----A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEE----ALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHH----HHHHHHHHHHH
Confidence 3568899999999999999999 5566 6678889999999999999 99999999886
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.086 Score=35.82 Aligned_cols=104 Identities=16% Similarity=0.062 Sum_probs=75.7
Q ss_pred HHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHH
Q 043380 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD--IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RST 131 (246)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~ 131 (246)
-.++-..|+.++|..+|++.... |+... ...+-.+-+.+...|++++|..+++.... . .|+ ...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-------gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~-~--~p~~~~~~~l 77 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-------GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE-E--FPDDELNAAL 77 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H--CCCccccHHH
Confidence 34566789999999999999997 55544 34677788889999999999999999887 2 243 222
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHH
Q 043380 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~ 184 (246)
...+..++...|+.++ |++.+-..... +...|..-|..|+
T Consensus 78 ~~f~Al~L~~~gr~~e----Al~~~l~~la~---------~~~~y~ra~~~ya 117 (120)
T PF12688_consen 78 RVFLALALYNLGRPKE----ALEWLLEALAE---------TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHCCCHHH----HHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 2334457788899999 99888665443 3336666666655
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.75 E-value=0.013 Score=35.70 Aligned_cols=57 Identities=11% Similarity=0.016 Sum_probs=50.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
-..|.+.+++++|.++++.+..-.+.+...|...-.++...|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357889999999999999987545667888888999999999999999999999986
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.25 Score=40.37 Aligned_cols=127 Identities=13% Similarity=0.005 Sum_probs=94.2
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--hcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 19 VMNAVIEASRE--AQRIDEAYQILESVEKGLEPDSLSYNILISACI--KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 19 ~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
-|.+|-.++.- .|+-..|.++-.+-.+-+..|....-.++.+-. -.|+++.|.+-|+.|... |...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----------PEtR 153 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----------PETR 153 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----------hHHH
Confidence 45555555544 577788888877665556667777766776654 379999999999999874 4433
Q ss_pred --HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 95 --TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 95 --~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
-...|.-.--+.|+.+.|.++-+.... ..|. ...+.+.+...|..|+|+. |+++++.-++.
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~----AlkLvd~~~~~ 217 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDG----ALKLVDAQRAA 217 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHH----HHHHHHHHHHH
Confidence 233444445678999999988888766 5677 7888999999999999999 99999987665
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.69 E-value=0.37 Score=41.94 Aligned_cols=201 Identities=14% Similarity=0.066 Sum_probs=117.5
Q ss_pred hhhhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHH------
Q 043380 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNE------ 75 (246)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~------ 75 (246)
..++++++++|..|+... +...|+-.|.+.+|-++|.+--. . |-.+..|...+.+|.|.+++.
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~--e------nRAlEmyTDlRMFD~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH--E------NRALEMYTDLRMFDYAQEFLGSGDPKE 688 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc--h------hhHHHHHHHHHHHHHHHHHhhcCChHH
Confidence 457889999999888863 45566777888888888866431 1 122333444444444443332
Q ss_pred ------HHHhccCCCCCCCC-CccHHHHHHHHHHHHccCCHHHHHHHHH-----HHHhCCCCCC---CHHHHHHHHHHHH
Q 043380 76 ------QLKDNGQKCSSGGF-HPDIFTYATLLMGFRHAKDLQSLLEIVF-----EMKSCCNLIL---DRSTFTAMVDALL 140 (246)
Q Consensus 76 ------~m~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~-----~m~~~~~~~p---~~~~~~~li~~~~ 140 (246)
+--+-. .++ +|. +....+..+|+.++|..+.- +|.-+-+-+. +..+.-.+..-+.
T Consensus 689 KKmL~RKRA~WA-----r~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk 758 (1081)
T KOG1538|consen 689 KKMLIRKRADWA-----RNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLK 758 (1081)
T ss_pred HHHHHHHHHHHh-----hhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHh
Confidence 111100 011 222 23344556677777776522 1111011112 2445555555566
Q ss_pred hcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchh----hhHHH
Q 043380 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV----QEEAG 216 (246)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~ 216 (246)
+...+.. |-++|..|-.. ..++..+...++|++|..+.++..+-.....-|.. ...-|
T Consensus 759 ~l~~~gL----AaeIF~k~gD~--------------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 759 KLDSPGL----AAEIFLKMGDL--------------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred hccccch----HHHHHHHhccH--------------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhH
Confidence 6777888 99999988654 45788888999999999999886543222111110 00023
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 217 HLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 217 ~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.-.=++|.+.|+-++|.++++++..
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3455688999999999999988754
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.038 Score=42.60 Aligned_cols=105 Identities=25% Similarity=0.246 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCc
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISP 209 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 209 (246)
..|+.-+. +.+.|++.. |...|....+.+ |+-.-....+..|..++...|+++.|-.+|..+.+..+.+-.
T Consensus 143 ~~Y~~A~~-~~ksgdy~~----A~~~F~~fi~~Y---P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K- 213 (262)
T COG1729 143 KLYNAALD-LYKSGDYAE----AEQAFQAFIKKY---PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK- 213 (262)
T ss_pred HHHHHHHH-HHHcCCHHH----HHHHHHHHHHcC---CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC-
Confidence 35776655 556777999 999999999973 333344567788999999999999999999998865543222
Q ss_pred hhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhccC
Q 043380 210 EVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKG 245 (246)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 245 (246)
.++ +.-.|..+..+.|+.++|..+|+++.++=+|
T Consensus 214 Apd--allKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 214 APD--ALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred ChH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 112 5677888899999999999999999987665
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.21 Score=38.62 Aligned_cols=133 Identities=11% Similarity=-0.068 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 043380 55 NILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134 (246)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 134 (246)
+.++..+.-.+.+.-...++.+.++. ..+.+......|.+.-.+.||.+.|...|++..+ ..-..|..+++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKI 252 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhH
Confidence 45666666678888888999999886 5566788888899999999999999999998877 444455444444
Q ss_pred HH-----HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC
Q 043380 135 MV-----DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG 205 (246)
Q Consensus 135 li-----~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (246)
++ ..|...+++-. |.+.|.+....+ .-|....|.-.-+..-.|+...|.+..+.|.+..++
T Consensus 253 ~V~~n~a~i~lg~nn~a~----a~r~~~~i~~~D------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAE----AHRFFTEILRMD------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHhhhhhheecccchHH----HHHHHhhccccC------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 43 35566778888 898888887762 224444555455555678999999999999877654
No 197
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.62 E-value=0.19 Score=42.45 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=96.4
Q ss_pred HHHHhcCCHHHHHHHHHH--HHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH
Q 043380 25 EASREAQRIDEAYQILES--VEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102 (246)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~--~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~ 102 (246)
....-.++++++.++.+. +...++ ..-.+.++.-+-+.|.++.|+.+-..-. .=...
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------------~rFeL 327 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------------HRFEL 327 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------------HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------------HHhHH
Confidence 344556788887777752 222222 3447777777788888888876544322 12334
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 043380 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182 (246)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~ 182 (246)
..+.|+++.|.++-+ -.++...|..|.......|+++- |++.|++... |..|+-.
T Consensus 328 Al~lg~L~~A~~~a~-------~~~~~~~W~~Lg~~AL~~g~~~l----Ae~c~~k~~d--------------~~~L~lL 382 (443)
T PF04053_consen 328 ALQLGNLDIALEIAK-------ELDDPEKWKQLGDEALRQGNIEL----AEECYQKAKD--------------FSGLLLL 382 (443)
T ss_dssp HHHCT-HHHHHHHCC-------CCSTHHHHHHHHHHHHHTTBHHH----HHHHHHHCT---------------HHHHHHH
T ss_pred HHhcCCHHHHHHHHH-------hcCcHHHHHHHHHHHHHcCCHHH----HHHHHHhhcC--------------ccccHHH
Confidence 456688888877633 23457788888888888888888 8888877654 4667778
Q ss_pred HHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHH
Q 043380 183 LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
|...|+.+...++.+.....+ -++..+.++.-.|++++..+++.+
T Consensus 383 y~~~g~~~~L~kl~~~a~~~~-----------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKIAEERG-----------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHCT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888777765443 256666666677777777777654
No 198
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.62 E-value=0.067 Score=44.32 Aligned_cols=132 Identities=9% Similarity=0.029 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCN-LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
..|..+|+.-.+..-.+.|..+|-...+ .| +.++...++++|..++. |+... |.++|+.=... +.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~~-~d~~t----a~~ifelGl~~------f~d~ 465 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYAT-GDRAT----AYNIFELGLLK------FPDS 465 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHhc-CCcch----HHHHHHHHHHh------CCCc
Confidence 4688899999999999999999999999 88 67889999999998775 56777 99999986664 3333
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
..-.+..+.-+.+.++-..|..+|+.-.+.- ...-....|..+|+-=..-|+...|..+=++|..
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r~----~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVERL----EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH----HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 3444677888889999999999999544321 1111122799999999999999888777666654
No 199
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.59 E-value=0.47 Score=41.94 Aligned_cols=215 Identities=12% Similarity=0.012 Sum_probs=137.6
Q ss_pred HHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCC
Q 043380 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 87 (246)
+......-|...|..|--+..+.|+++.+-+.|++...+.--....|+.+-..|...|.-..|..+.+.-...
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~------- 386 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK------- 386 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-------
Confidence 3333456788999999999999999999999999976555667788999999999999988899988876654
Q ss_pred CCCcc-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHhc----CChhh-h--hhHHH
Q 043380 88 GFHPD-IFTYATLLMGFR-HAKDLQSLLEIVFEMKSC-----CNLILDRSTFTAMVDALLYS----GSIKV-V--GLYAL 153 (246)
Q Consensus 88 ~~~p~-~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~-----~~~~p~~~~~~~li~~~~~~----~~~~~-~--~~~a~ 153 (246)
.-.|+ ...+-..-..|. +-+..++++++-.+.... ..+. ...|..+.-+|... ..+.+ . ...++
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~--~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLK--PRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhh--hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 11243 333333333333 345555555554443331 1122 33344444444332 11111 0 11166
Q ss_pred HHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHH
Q 043380 154 CIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233 (246)
Q Consensus 154 ~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 233 (246)
+.+++-.+.+ +-.|+..-| +---|+-.++++.|.....+...-+.+... ..|..|...+..++++.+|+
T Consensus 465 qale~av~~d----~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~-----~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 465 QALEEAVQFD----PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSA-----KAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHhcC----CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccH-----HHHHHHHHHHhhhhhhHHHH
Confidence 6666665542 233443333 444467788999999999988765433222 16888999999999999999
Q ss_pred HHHHHHHhh
Q 043380 234 DKLSNTITR 242 (246)
Q Consensus 234 ~~~~~m~~~ 242 (246)
.+.+...+.
T Consensus 534 ~vvd~al~E 542 (799)
T KOG4162|consen 534 DVVDAALEE 542 (799)
T ss_pred HHHHHHHHH
Confidence 999877654
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.59 E-value=0.29 Score=39.43 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCc
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISP 209 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 209 (246)
.+.+..|.-+...|+... |.++-.+. ++ |+..-|...+.+++..++|++.+++... . -+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~----A~kl~k~F--------kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsP 237 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQ----AEKLKKEF--------KV-PDKRFWWLKIKALAENKDWDELEKFAKS-K------KSP 237 (319)
T ss_pred CCHHHHHHHHHHCCCHHH----HHHHHHHc--------CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCC
Confidence 356666778888899888 88776665 23 8899999999999999999998887654 1 122
Q ss_pred hhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 210 EVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
- .|..++++|.+.|+.++|..++..+..
T Consensus 238 I----GyepFv~~~~~~~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 238 I----GYEPFVEACLKYGNKKEASKYIPKIPD 265 (319)
T ss_pred C----ChHHHHHHHHHCCCHHHHHHHHHhCCh
Confidence 1 488899999999999999999987543
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.47 E-value=0.11 Score=43.29 Aligned_cols=64 Identities=6% Similarity=-0.064 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH----HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI----FTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
.+...++.+-.+|...|++++|...|++.++. .|+. .+|..+-.+|...|+.++|.+.+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677888888888888888888888888875 5663 3588888888888888888888888777
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.47 E-value=0.25 Score=42.14 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH-----HHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCC
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI-----FTYATLLMGFRH----AKDLQSLLEIVFEMKSCCNLI 126 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~ 126 (246)
.+++..+=.|+-+.+++++.+..+.+ ++.-.. -+|+..+..++. ..+.+.|.++++.+.. -.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~------~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~---~y 263 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSE------NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK---RY 263 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccC------CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH---hC
Confidence 44455556788899999998876652 444322 256666666554 4578899999999998 56
Q ss_pred CCHHHHHH-HHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCC-CcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCC
Q 043380 127 LDRSTFTA-MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL-WPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST 204 (246)
Q Consensus 127 p~~~~~~~-li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (246)
|+...|.. --+.+...|++++ |.+.|+....... .. +.....+--+.-++...++|++|.+.|..+.+.+
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~----Ai~~~~~a~~~q~---~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEE----AIESFERAIESQS---EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHH----HHHHHHHhccchh---hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 88777653 3456777899999 9999997554200 11 1223456667777888999999999999998653
Q ss_pred CCCCchhhhHHHHHHHHH-HHhcCCh-------hHHHHHHHHHHh
Q 043380 205 GTISPEVQEEAGHLLMEA-ALNDGQV-------DLALDKLSNTIT 241 (246)
Q Consensus 205 ~~~~~~~~~~~~~~li~~-~~~~g~~-------~~a~~~~~~m~~ 241 (246)
.+++. .|..+.-+ +...|+. ++|.++|+++..
T Consensus 336 -~WSka----~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 336 -KWSKA----FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred -ccHHH----HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 24433 35444444 3557877 889999887743
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.32 Score=38.13 Aligned_cols=102 Identities=8% Similarity=-0.042 Sum_probs=82.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHcc---CCHHHHHHHHHHHHhC
Q 043380 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA---KDLQSLLEIVFEMKSC 122 (246)
Q Consensus 46 ~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~ 122 (246)
.-+-|...|-.|-..|...|+.+.|..-|....+. -.++...+..+-.++... .+-.++..+|+++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~- 221 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA- 221 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-
Confidence 34668899999999999999999999999999886 234455555555554333 345789999999998
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 123 CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 123 ~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..|+ ..+...|...+...|++.+ |...|+.|.+.
T Consensus 222 --~D~~~iral~lLA~~afe~g~~~~----A~~~Wq~lL~~ 256 (287)
T COG4235 222 --LDPANIRALSLLAFAAFEQGDYAE----AAAAWQMLLDL 256 (287)
T ss_pred --cCCccHHHHHHHHHHHHHcccHHH----HHHHHHHHHhc
Confidence 5565 6677788889999999999 99999999986
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.40 E-value=0.24 Score=36.29 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=98.5
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
..|+...--.|-.+....|+..+|...|++... .-+.-|....-.+..+....+++-. |..+++.+.+.. -.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~----a~~tLe~l~e~~--pa~ 157 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAA----AQQTLEDLMEYN--PAF 157 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHH----HHHHHHHHhhcC--Ccc
Confidence 467777777889999999999999999999887 5455668888889999999999999 999999988761 012
Q ss_pred CCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
-.|| +.-.+-+.+...|+...|+.-|+....--+|.. .-...-..+.++|+.++|..-+.++
T Consensus 158 r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-------ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 158 RSPD--GHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-------ARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-------HHHHHHHHHHHhcchhHHHHHHHHH
Confidence 2344 445667889999999999999998765432211 2222444566778777665544444
No 205
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.34 Score=37.05 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHH------HHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNI------LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
...|.---.+|-.+.++++|..-+....++...|...|++ .+-..-....+.++..+|++....-++ .=.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E----~Gs 106 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE----CGS 106 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hCC
Confidence 3456666778888899999988777665555555555543 222223344555666666555432100 012
Q ss_pred ccHHHHHHHHHH--HHccCCHHHHHHHHHHHHhCC---C-CCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc
Q 043380 91 PDIFTYATLLMG--FRHAKDLQSLLEIVFEMKSCC---N-LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164 (246)
Q Consensus 91 p~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~---~-~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 164 (246)
|+... -+|=.+ ...+-++++|+++|++-.... + ...-...|..+-+.+.+...+++ |-..|..-..-.-
T Consensus 107 pdtAA-maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E----aa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 107 PDTAA-MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE----AATAFLKEGVAAD 181 (308)
T ss_pred cchHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH----HHHHHHHhhhHHH
Confidence 33211 011111 123455677777776654410 0 01112345666667777777777 5544443222100
Q ss_pred CCCCCCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 165 SNPGLWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 165 ~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
.. .--|+. ..|...|-.|....++..|++.++.--+.. ++..+.- ..+...|+.+| ..|+.+++..++
T Consensus 182 ~~-~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip-~f~~sed-~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 182 KC-DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP-AFLKSED-SRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HH-hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc-cccChHH-HHHHHHHHHHh-ccCCHHHHHHHH
Confidence 00 112232 457777778888889999999999854333 2232221 22677888888 678888877765
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.28 E-value=0.28 Score=35.94 Aligned_cols=154 Identities=13% Similarity=0.093 Sum_probs=94.0
Q ss_pred HHHHHhcCCHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQIL-ESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~-~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~ 102 (246)
..+..+.=+++...+-. +.+. +.|++..--.|-++....|+..+|...|.+...- -+.-|....-.+-++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~A 133 (251)
T COG4700 63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQA 133 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHH
Confidence 33334444444443322 2232 3566666667777788888888888888887763 344566677777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHH
Q 043380 103 FRHAKDLQSLLEIVFEMKSCCN---LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179 (246)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 179 (246)
....+++..|...++.+.+ .. -.|| +.-.+.+.|...|.+.. |+.-|+..... -|+...-.--
T Consensus 134 qfa~~~~A~a~~tLe~l~e-~~pa~r~pd--~~Ll~aR~laa~g~~a~----Aesafe~a~~~-------ypg~~ar~~Y 199 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLME-YNPAFRSPD--GHLLFARTLAAQGKYAD----AESAFEVAISY-------YPGPQARIYY 199 (251)
T ss_pred HHhhccHHHHHHHHHHHhh-cCCccCCCC--chHHHHHHHHhcCCchh----HHHHHHHHHHh-------CCCHHHHHHH
Confidence 7788888888888887776 32 1233 34456677788888888 88888887775 2333222222
Q ss_pred HHHHHhcCChhHHh----hHHHhhC
Q 043380 180 MHELAARVDYDIVK----SPYRRMW 200 (246)
Q Consensus 180 i~~~~~~g~~~~a~----~~~~~~~ 200 (246)
-..+++.|+.+++. .+++.+.
T Consensus 200 ~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 200 AEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHH
Confidence 23345666555444 4444444
No 207
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.22 E-value=0.26 Score=39.24 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=80.7
Q ss_pred cchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHc--cCC----HHHHHHHHHHHHhCCCC--CCCHHHHHHHHHH
Q 043380 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH--AKD----LQSLLEIVFEMKSCCNL--ILDRSTFTAMVDA 138 (246)
Q Consensus 67 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~----~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~ 138 (246)
+++...+++.|++. |+.-+..+|-+....... ..+ ...|..+|+.|++...+ .++..++..++..
T Consensus 78 ~~~~~~~y~~L~~~-------gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-------GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHHh-------ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 45677889999998 788888877775444433 333 46789999999994443 2445666666555
Q ss_pred HHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch--hhHHHHHHHHHhcCC--hhHHhhHHHhhCCCC
Q 043380 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP--HLYVSMMHELAARVD--YDIVKSPYRRMWPDS 203 (246)
Q Consensus 139 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~ 203 (246)
..++++...+.++.+|+.+... |+..+. ...+.++........ ..++.++++.+.+.+
T Consensus 151 --~~~~~e~l~~~~E~~Y~~L~~~-----~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 151 --TSEDVEELAERMEQCYQKLADA-----GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNG 212 (297)
T ss_pred --ccccHHHHHHHHHHHHHHHHHh-----CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 5566666556689999999987 665443 333444433332222 347888888887665
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.26 Score=38.63 Aligned_cols=113 Identities=10% Similarity=-0.046 Sum_probs=85.0
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHhccCCCCCCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKT---KKLDVTMPFNEQLKDNGQKCSSGGF 89 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~ 89 (246)
-+-|...|-.|-..|...|+...|..-|....+--++|...+..+-.++... ..-.++..+|+++...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--------- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--------- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---------
Confidence 5668889999999999999999999999887643456666666666555443 3456799999999986
Q ss_pred Cc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 043380 90 HP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137 (246)
Q Consensus 90 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 137 (246)
.| |+.+-.-|-..+...|++.+|...|+.|.+ ..|....+..+|.
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~---~lp~~~~rr~~ie 268 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD---LLPADDPRRSLIE 268 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh---cCCCCCchHHHHH
Confidence 45 556666777788999999999999999999 3343333444443
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.09 E-value=0.67 Score=38.70 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-hC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVE-KG-LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~-~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
..+|-..|+.-.+..-++.|..+|-..+ .+ +.+++..++++|..++. |++.-|..+|+-=... .||..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---------f~d~~ 466 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---------FPDST 466 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---------CCCch
Confidence 4567778888888888999999999887 55 56888999999998775 5678888888765543 35544
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 95 -TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD--RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 95 -~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
--+-.+.-+.+-++-+.|..+|+.... . +..+ ...|-.+|.--..-|+... +..+=+.|... -|
T Consensus 467 ~y~~kyl~fLi~inde~naraLFetsv~-r-~~~~q~k~iy~kmi~YEs~~G~lN~----v~sLe~rf~e~-------~p 533 (660)
T COG5107 467 LYKEKYLLFLIRINDEENARALFETSVE-R-LEKTQLKRIYDKMIEYESMVGSLNN----VYSLEERFREL-------VP 533 (660)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHH-H-HHHhhhhHHHHHHHHHHHhhcchHH----HHhHHHHHHHH-------cC
Confidence 345566777888999999999995443 1 3234 6789999999899999988 88777777664 35
Q ss_pred chhhHHHHHHHHHhc
Q 043380 172 KPHLYVSMMHELAAR 186 (246)
Q Consensus 172 ~~~~~~~li~~~~~~ 186 (246)
...+.....+-|+-.
T Consensus 534 Qen~~evF~Sry~ik 548 (660)
T COG5107 534 QENLIEVFTSRYAIK 548 (660)
T ss_pred cHhHHHHHHHHHhhh
Confidence 555555555444433
No 210
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.04 E-value=0.46 Score=37.85 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHh--cC----CcchHHHHHHHHHhccCCCCCCCC-CccHHHHHHHHHHHH
Q 043380 33 IDEAYQILESVE-KGLEPDSLSYNILISACIK--TK----KLDVTMPFNEQLKDNGQKCSSGGF-HPDIFTYATLLMGFR 104 (246)
Q Consensus 33 ~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~~~~~~~~-~p~~~~~~~ll~~~~ 104 (246)
+++...+++.|. .|++.+..+|-+....... .. ....|.++|+.|++.. ..+ .++..++..||..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H-----~fLTs~~D~~~a~lLA~-- 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH-----PFLTSPEDYPFAALLAM-- 150 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC-----ccccCccchhHHHHHhc--
Confidence 455667778887 6798888777664433333 22 3467999999999872 011 2456677777666
Q ss_pred ccCCH----HHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHH
Q 043380 105 HAKDL----QSLLEIVFEMKSCCNLILDRS-TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSM 179 (246)
Q Consensus 105 ~~~~~----~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 179 (246)
...+. +.++.+|+.+.+ .|+..+.. -+-+-+-+++....-+. ..++.++++.+.+. |+++....|..+
T Consensus 151 ~~~~~e~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~-v~r~~~l~~~l~~~-----~~kik~~~yp~l 223 (297)
T PF13170_consen 151 TSEDVEELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEK-VARVIELYNALKKN-----GVKIKYMHYPTL 223 (297)
T ss_pred ccccHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHH-HHHHHHHHHHHHHc-----CCccccccccHH
Confidence 44444 567888999998 88887733 23233333333222222 33399999999998 888777665543
Q ss_pred HHHHHhcCC-----hhHHhhHHHhhCCC
Q 043380 180 MHELAARVD-----YDIVKSPYRRMWPD 202 (246)
Q Consensus 180 i~~~~~~g~-----~~~a~~~~~~~~~~ 202 (246)
..++-.++ .+...++.+.+.+.
T Consensus 224 -GlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 224 -GLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred -HHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 33343333 33455555555443
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.3 Score=37.84 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHH
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RST 131 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~ 131 (246)
.|+..+.. .+.|++..|..-|...++.. .+-.-....+-.|..++...|++++|..+|..+.+..+-.|- +..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHH
Confidence 58887776 45677999999999999862 111123346778999999999999999999999885555555 467
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+--|.....+.|+.++ |..+|+++.++
T Consensus 218 llKlg~~~~~l~~~d~----A~atl~qv~k~ 244 (262)
T COG1729 218 LLKLGVSLGRLGNTDE----ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHhcCHHH----HHHHHHHHHHH
Confidence 8889999999999999 99999999998
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.17 Score=44.27 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHh------C-CCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhh
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKS------C-CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~------~-~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~ 163 (246)
.+...|......|...|+.+.-.+.+-.... . ..++-|......+..++.+.|..+. |.+.|-+-..
T Consensus 807 a~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q----AV~a~Lr~s~-- 880 (1189)
T KOG2041|consen 807 AEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ----AVEAYLRRSL-- 880 (1189)
T ss_pred HHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH----HHHHHHhccC--
Confidence 4445566666666666665544333222211 0 1133456677788889999999998 8876644322
Q ss_pred cCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhH-----HHHHHHHHHHhcCChhHHHHHHHH
Q 043380 164 CSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEE-----AGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 164 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
| .+-+..|....+|.+|.++.+.......+.+-...... -..--|..+.+.|+.-.|-+++.+
T Consensus 881 -------p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 881 -------P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred -------c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 2 34567778888888888888876532211111000000 011134556777777777777777
Q ss_pred HHhh
Q 043380 239 TITR 242 (246)
Q Consensus 239 m~~~ 242 (246)
|.++
T Consensus 949 mae~ 952 (1189)
T KOG2041|consen 949 MAER 952 (1189)
T ss_pred HhHH
Confidence 7654
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.02 E-value=0.4 Score=35.91 Aligned_cols=152 Identities=9% Similarity=0.044 Sum_probs=82.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 043380 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137 (246)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 137 (246)
...+...|++++|.+.|+++.... .+-+--....-.+..++-+.|+++.|...+++..+...-.|. ..+...+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~ 85 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYML 85 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHH
Confidence 344567788999999999998751 111122345667788888999999999999998772322222 22333344
Q ss_pred HHHhcCChhh---------hhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCC
Q 043380 138 ALLYSGSIKV---------VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 138 ~~~~~~~~~~---------~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (246)
+.+....... ....|.. .+..++.-|-.+....+|...+..+... +.
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~--------------------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la 141 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIE--------------------EFEELIKRYPNSEYAEEAKKRLAELRNR----LA 141 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHH--------------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHhCccchhcccChHHHHHHHH--------------------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HH
Confidence 3333222222 0000333 3444555555555555665555554321 00
Q ss_pred chhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 209 PEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
. .--.+.+.|.+.|.+..|..-++.+.++=+
T Consensus 142 ~-----~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 142 E-----HELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp H-----HHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred H-----HHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 0 122356677888888888888877776543
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.53 Score=36.48 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=98.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
.-++++....-.+.+.-....+++..+ ..-..++...+.|.+.--..|+.+. |..+|+...+. .-+.|..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~----a~~yf~~vek~-----~~kL~~~ 248 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKT----AEKYFQDVEKV-----TQKLDGL 248 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHH----HHHHHHHHHHH-----Hhhhhcc
Confidence 446677777778888889999999988 6556678888899999999999999 99999988876 3444554
Q ss_pred hHHHHH-----HHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhccC
Q 043380 175 LYVSMM-----HELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKG 245 (246)
Q Consensus 175 ~~~~li-----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 245 (246)
+.+.++ ..|.-+.++..|...++++...+..... ..|.=.-+..-.|+..+|++.++.|..+-++
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~------a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV------ANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh------hhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 444443 4566677899999999888755432221 2233222333478999999999999876553
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.92 E-value=0.42 Score=42.01 Aligned_cols=148 Identities=9% Similarity=-0.043 Sum_probs=86.2
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hCCCCC--HHH------HHHHHHHHHhcCCcchHHHHHHHHHhccC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE--KGLEPD--SLS------YNILISACIKTKKLDVTMPFNEQLKDNGQ 82 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~--~~t------~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 82 (246)
..|.+..|..|.......-.++.|+..|-+.. .|++.- ..| -.+=+.+| -|++++|+++|-+|-.+
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr-- 763 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR-- 763 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh--
Confidence 56888889888887777777888888876654 343211 011 11112222 36788888888887665
Q ss_pred CCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 83 KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 83 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
...+..+.+.|||-.+.++++. .|-..| ...|+.+...++....|++ |.+.|..
T Consensus 764 --------------DLAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~----A~~yY~~ 821 (1189)
T KOG2041|consen 764 --------------DLAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEE----AAKYYSY 821 (1189)
T ss_pred --------------hhhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh
Confidence 1345566677777555554432 222222 3467777777777777777 7766655
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 159 IVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 159 m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
-... ...+.++.+..++++.+.+...+.
T Consensus 822 ~~~~--------------e~~~ecly~le~f~~LE~la~~Lp 849 (1189)
T KOG2041|consen 822 CGDT--------------ENQIECLYRLELFGELEVLARTLP 849 (1189)
T ss_pred ccch--------------HhHHHHHHHHHhhhhHHHHHHhcC
Confidence 4332 224455555555555555555543
No 216
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.72 Score=39.09 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=92.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHH-------HHHHHHHhcCCcchHHHHHHHHHhccCCCCC
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYN-------ILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~-------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 86 (246)
-+..-++..-.+|...|...++....+... .| .-...-|+ .+-++|.+.++++.+...|.+....
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte------ 327 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE------ 327 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh------
Confidence 444455666667777777766666554432 21 11112222 2334566667788888888877665
Q ss_pred CCCCccHHH-------------------------HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH
Q 043380 87 GGFHPDIFT-------------------------YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALL 140 (246)
Q Consensus 87 ~~~~p~~~~-------------------------~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 140 (246)
...|+..+ .-.--+.+.+.|++..|...|.++.. .. |+ ...|+...-+|.
T Consensus 328 -~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk-r~--P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 328 -HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK-RD--PEDARLYSNRAACYL 403 (539)
T ss_pred -hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-cC--CchhHHHHHHHHHHH
Confidence 22333221 11113334556777777777777666 32 44 666777777777
Q ss_pred hcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhHHHHHHHHHhcCChhHHhhHHHhhCCC
Q 043380 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLYVSMMHELAARVDYDIVKSPYRRMWPD 202 (246)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (246)
+.|.+.. |++--+.-.+. .|+ ...|.-=..++....++++|.+.|++-.+.
T Consensus 404 kL~~~~~----aL~Da~~~ieL-------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 404 KLGEYPE----ALKDAKKCIEL-------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHhhHHH----HHHHHHHHHhc-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777 66665555443 222 233333344444445666777777666543
No 217
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.85 E-value=0.11 Score=40.57 Aligned_cols=105 Identities=12% Similarity=0.120 Sum_probs=79.9
Q ss_pred CccHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh-----h-------hhHH
Q 043380 90 HPDIFTYATLLMGFRH-----AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV-----V-------GLYA 152 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~-----~-------~~~a 152 (246)
+.|..+|-..+..+.. .+.++-....++.|++ .|+.-|..+|+.|+..+-+-.-... + -.-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 5577788888877743 3556777777899999 9999999999999998776543222 0 0117
Q ss_pred HHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCCh-hHHhhHHHhhC
Q 043380 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY-DIVKSPYRRMW 200 (246)
Q Consensus 153 ~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~ 200 (246)
++++++|... |+.||-.+-..|++++++.+.. .+..++.-.|-
T Consensus 143 I~vLeqME~h-----GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 143 IKVLEQMEWH-----GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHHc-----CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 8999999999 9999999999999999998874 35555555444
No 218
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.84 E-value=0.76 Score=37.06 Aligned_cols=193 Identities=11% Similarity=0.020 Sum_probs=128.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
+..+.-.|+...|++....+..-.+.|...|..--.+|...|++..|..=++...+. ..-+..++--+-..+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLL 233 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHH
Confidence 445566788899999888877655779999999999999999999888766666553 234555666677777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCCHH-HHH---HH---------HHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILDRS-TFT---AM---------VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~---~l---------i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
-..|+.+.++....+..+ +.||-. .|. .| +......++|.+ +++..+...+. .|...
T Consensus 234 Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~----cle~ge~vlk~---ep~~~ 303 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTE----CLEAGEKVLKN---EPEET 303 (504)
T ss_pred HhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHhc---CCccc
Confidence 889999999999888887 667732 222 11 223344556666 66666666554 11211
Q ss_pred -cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 171 -PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 171 -p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
.....+..+-.++...|++.+|.....++.... +.++. ++.-=.++|.--..+|.|++=|+...
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d----~~dv~--~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID----PDDVQ--VLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcC----chHHH--HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 112345566677778889999999888877543 22222 44445566666667777776665543
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.84 E-value=0.24 Score=38.67 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC--------------
Q 043380 48 EPDSLSYNILISACIKT-----KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD-------------- 108 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-------------- 108 (246)
..|-.+|-+++..+... +..+-....++.|.+- |++.|..+|+.||+.+=+-.-
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-------GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP 136 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-------GVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYP 136 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-------cchhhHHHHHHHHHhCcccccccHHHHHHHHhhCc
Confidence 55677777777776543 4556666667788887 899999999999998755322
Q ss_pred --HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 109 --LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 109 --~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
-+-+.+++++|.. .|+.||..+-..|+.++.+.+-.-.+ .+++.-.|-+
T Consensus 137 ~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K---~~Rm~yWmPk 187 (406)
T KOG3941|consen 137 QQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKK---VKRMLYWMPK 187 (406)
T ss_pred hhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHH---HHHHHHhhhh
Confidence 2558899999999 99999999999999999998875543 4444444444
No 220
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.81 E-value=0.39 Score=33.46 Aligned_cols=127 Identities=11% Similarity=0.056 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 133 (246)
...++..+...+.+.....+++.+... + ..+...++.++..|++.+ ..+..+.+.. . ++.....
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-------~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~ 73 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKL-------N-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIE 73 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHcc-------C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHH
Confidence 445677777777788888888888776 3 256667888888887653 3444444442 1 2233344
Q ss_pred HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc-CChhHHhhHHHhhCCCCCCCCCchhh
Q 043380 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR-VDYDIVKSPYRRMWPDSTGTISPEVQ 212 (246)
Q Consensus 134 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~ 212 (246)
.+++.|.+.+.+++ +..++..+... ...+..+... ++++.|.+++.+-. .+.
T Consensus 74 ~~~~~c~~~~l~~~----~~~l~~k~~~~--------------~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~-- 126 (140)
T smart00299 74 KVGKLCEKAKLYEE----AVELYKKDGNF--------------KDAIVTLIEHLGNYEKAIEYFVKQN-------NPE-- 126 (140)
T ss_pred HHHHHHHHcCcHHH----HHHHHHhhcCH--------------HHHHHHHHHcccCHHHHHHHHHhCC-------CHH--
Confidence 47777777888888 88777776332 2233333333 77888888777632 112
Q ss_pred hHHHHHHHHHHHh
Q 043380 213 EEAGHLLMEAALN 225 (246)
Q Consensus 213 ~~~~~~li~~~~~ 225 (246)
.|..++..+..
T Consensus 127 --lw~~~~~~~l~ 137 (140)
T smart00299 127 --LWAEVLKALLD 137 (140)
T ss_pred --HHHHHHHHHHc
Confidence 56667666653
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.81 E-value=0.21 Score=41.63 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=57.9
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDS----LSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
.+.+...|+.+-.+|.+.|++++|+..|++... +.|+. .+|..+-.+|...|+.++|.+.+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe-L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALE-LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999998653 35653 45999999999999999999999999885
No 222
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.76 E-value=0.16 Score=39.83 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
=..++..++..+...|+.+.+.+.++++-.--+-+...|..+|.+|.+.|+...|+..|+++.+. ...+.|+.|...+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~--~~edlgi~P~~~~ 229 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT--LAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH--hhhhcCCCccHHH
Confidence 34567778888899999999999999987545779999999999999999999999999999874 3345688998888
Q ss_pred HHHHHHH
Q 043380 96 YATLLMG 102 (246)
Q Consensus 96 ~~~ll~~ 102 (246)
.......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 7777666
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.48 Score=38.02 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=90.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH--HH--HHHHHHHHc
Q 043380 30 AQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF--TY--ATLLMGFRH 105 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~--~~--~~ll~~~~~ 105 (246)
+|+..+|-..++++.+..+.|...++..=.+|...|+.+.-...+++.... ..||.. +| ...--++..
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--------wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--------WNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--------cCCCCcHHHHHHHHHHhhHHH
Confidence 455556666666666556777777777777777777777777777777653 233332 22 222233456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHH
Q 043380 106 AKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA 184 (246)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~ 184 (246)
+|-+++|++.-++..+ +.| |...-++....+-..+++.+ +.+...+-... .+.+...-.+.|-+..-.+.
T Consensus 188 ~g~y~dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Ke----g~eFM~~ted~--Wr~s~mlasHNyWH~Al~~i 258 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKE----GKEFMYKTEDD--WRQSWMLASHNYWHTALFHI 258 (491)
T ss_pred hccchhHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhh----HHHHHHhcccc--hhhhhHHHhhhhHHHHHhhh
Confidence 7777777777666655 333 46666777777777777777 77665544332 00112222344545555566
Q ss_pred hcCChhHHhhHHHh
Q 043380 185 ARVDYDIVKSPYRR 198 (246)
Q Consensus 185 ~~g~~~~a~~~~~~ 198 (246)
..+.++.|+++|+.
T Consensus 259 E~aeye~aleIyD~ 272 (491)
T KOG2610|consen 259 EGAEYEKALEIYDR 272 (491)
T ss_pred cccchhHHHHHHHH
Confidence 66777777777764
No 224
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.14 Score=43.23 Aligned_cols=104 Identities=11% Similarity=0.104 Sum_probs=87.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHH
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVD 137 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 137 (246)
++.+..|+++.|...|.+.+.. -++|.+.|..=..+|+..|++++|++==..-.+ +.|+ ...|+-...
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l--------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML--------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGA 78 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc--------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHH
Confidence 4567889999999999999985 356888999999999999999999876666555 8899 778999999
Q ss_pred HHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 043380 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183 (246)
Q Consensus 138 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~ 183 (246)
++...|++++ |..-|.+-.+. -.-|...++.+..++
T Consensus 79 a~~~lg~~~e----A~~ay~~GL~~------d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 79 ALFGLGDYEE----AILAYSEGLEK------DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHhcccHHH----HHHHHHHHhhc------CCchHHHHHhHHHhh
Confidence 9999999999 99999988775 334557778888777
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.56 E-value=1.2 Score=37.30 Aligned_cols=141 Identities=14% Similarity=0.146 Sum_probs=96.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH
Q 043380 29 EAQRIDEAYQILESVEKGLEPDSL------SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~~~~~~~------t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~ 102 (246)
+.+++.+|+++|.++-+....+.. .-+-+|++|...+ .+.....+....+. .| ...|-.|..+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~---------~~-~s~~l~LF~~ 86 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ---------FG-KSAYLPLFKA 86 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh---------cC-CchHHHHHHH
Confidence 578899999999998643344433 3467888887754 78888888888775 34 3455566555
Q ss_pred H--HccCCHHHHHHHHHHHHhCC--CCC------------CCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 103 F--RHAKDLQSLLEIVFEMKSCC--NLI------------LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 103 ~--~~~~~~~~a~~~~~~m~~~~--~~~------------p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
. -+.+.+.+|.+.+....+ . +-. +|-..=+..+.++...|++.+ +..+++++...-- .
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~-~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~E----gR~iLn~i~~~ll-k 160 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKE-QIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSE----GRAILNRIIERLL-K 160 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHh-hhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHh-h
Confidence 3 477889999998887766 3 211 222233567888899999999 9999999887610 0
Q ss_pred CCCCcchhhHHHHHHHHHhc
Q 043380 167 PGLWPKPHLYVSMMHELAAR 186 (246)
Q Consensus 167 ~~~~p~~~~~~~li~~~~~~ 186 (246)
....-+..+|+.++-.++++
T Consensus 161 rE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred hhhcccHHHHHHHHHHHhHH
Confidence 12235778888877666643
No 226
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.49 E-value=0.3 Score=38.29 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=69.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
++..++..+...|+.+.+...++++.. . -+-+...|..+|.+|...|+... |++.|+++.+......|+.|-..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~-~-dp~~E~~~~~lm~~y~~~g~~~~----ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE-L-DPYDEPAYLRLMEAYLVNGRQSA----AIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh-c-CccchHHHHHHHHHHHHcCCchH----HHHHHHHHHHHhhhhcCCCccHH
Confidence 466678888999999999999999988 2 23468899999999999999999 99999999886555679999988
Q ss_pred hHHHHHHH
Q 043380 175 LYVSMMHE 182 (246)
Q Consensus 175 ~~~~li~~ 182 (246)
+.......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 87777666
No 227
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.43 E-value=0.36 Score=35.30 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP--DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD- 128 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~- 128 (246)
..+..+...|++.|+.++|.+.|.++.+. ...| -...+-.+|+.....+++..+.....+... .--.++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-------~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~-~~~~~~d 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-------CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES-LIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhccch
Confidence 56888999999999999999999999886 3333 345788899999999999999999887766 222222
Q ss_pred HH------HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC---CCCCCcchhhHHHHHHHHHhcCCh
Q 043380 129 RS------TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS---NPGLWPKPHLYVSMMHELAARVDY 189 (246)
Q Consensus 129 ~~------~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~ 189 (246)
.. .|..+ .+...+++.. |-+.|-+....... ..=+.|+..++...+.+++...+.
T Consensus 109 ~~~~nrlk~~~gL--~~l~~r~f~~----AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R~ 172 (177)
T PF10602_consen 109 WERRNRLKVYEGL--ANLAQRDFKE----AAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDRS 172 (177)
T ss_pred HHHHHHHHHHHHH--HHHHhchHHH----HHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCHH
Confidence 22 22222 3344678888 88777766544211 112345555555566666655543
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=95.28 E-value=0.48 Score=33.94 Aligned_cols=121 Identities=7% Similarity=-0.044 Sum_probs=77.1
Q ss_pred chHHHHHHHHHhccCCCC-CCCCCccHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 043380 68 DVTMPFNEQLKDNGQKCS-SGGFHPDIF--TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144 (246)
Q Consensus 68 ~~a~~~~~~m~~~~~~~~-~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 144 (246)
++..+.+.+....|.++. -.|+.++.- .|..--. +-..|++++|..+|.-+.. .+. -+..-+..|..+|-..++
T Consensus 10 ~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~-~y~~Gk~~eA~~~F~~L~~-~d~-~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 10 ERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYE-FYNQGRLDEAETFFRFLCI-YDF-YNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHH-hCc-CcHHHHHHHHHHHHHHHH
Confidence 333444444555443322 233443321 3333333 3467899999999998888 332 123345667777777888
Q ss_pred hhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 145 IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 145 ~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
++. |...|...... . .-|+..+-..-.+|...|+.+.|...|.....
T Consensus 87 y~~----Ai~~Y~~A~~l-----~-~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 87 FQK----ACDLYAVAFTL-----L-KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHH----HHHHHHHHHHc-----c-cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 998 99888877664 2 24555667778888889999999998888764
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.55 Score=38.44 Aligned_cols=125 Identities=5% Similarity=-0.059 Sum_probs=90.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh------CC---------CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCC
Q 043380 24 IEASREAQRIDEAYQILESVEK------GL---------EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~------~~---------~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 88 (246)
-+.|.+.|++..|..-|+...+ +. ..-..+++.+.-+|.+.+++.+|+..-.+.+..+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------- 287 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD------- 287 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-------
Confidence 3567889999999988877432 11 1223457778888899999999999999998862
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT-AMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
++|.-..--=-.++...|+++.|+..|+.+.+ +.|+...-+ .|+..--+......+ ..++|..|...
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~k---ekk~y~~mF~k 355 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEK---EKKMYANMFAK 355 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhc
Confidence 55666767777889999999999999999999 778855544 444444444443331 56777777665
No 230
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.18 E-value=0.8 Score=33.04 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=91.0
Q ss_pred HHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhh
Q 043380 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150 (246)
Q Consensus 71 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~ 150 (246)
.++++.+.+. +++|+...|..+++.+.+.|.+... .++.. .++-+|.......+-.+... ......
T Consensus 14 lEYirSl~~~-------~i~~~~~L~~lli~lLi~~~~~~~L----~qllq-~~Vi~DSk~lA~~LLs~~~~--~~~~~Q 79 (167)
T PF07035_consen 14 LEYIRSLNQH-------NIPVQHELYELLIDLLIRNGQFSQL----HQLLQ-YHVIPDSKPLACQLLSLGNQ--YPPAYQ 79 (167)
T ss_pred HHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHH----HHHHh-hcccCCcHHHHHHHHHhHcc--ChHHHH
Confidence 3455566666 8899999999999999999987554 44455 66778876666555444432 333112
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChh
Q 043380 151 YALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVD 230 (246)
Q Consensus 151 ~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (246)
.|.+.+.++.. .+..++..+...|++-+|.++.+..... ..+++ ..++++-.+.++..
T Consensus 80 l~lDMLkRL~~-------------~~~~iievLL~~g~vl~ALr~ar~~~~~--~~~~~-------~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 80 LGLDMLKRLGT-------------AYEEIIEVLLSKGQVLEALRYARQYHKV--DSVPA-------RKFLEAAANSNDDQ 137 (167)
T ss_pred HHHHHHHHhhh-------------hHHHHHHHHHhCCCHHHHHHHHHHcCCc--ccCCH-------HHHHHHHHHcCCHH
Confidence 25555555542 3567888999999999999999886432 22443 34888888888876
Q ss_pred HHHHHHHHHHhh
Q 043380 231 LALDKLSNTITR 242 (246)
Q Consensus 231 ~a~~~~~~m~~~ 242 (246)
.=..+++-...+
T Consensus 138 lf~~V~~ff~~~ 149 (167)
T PF07035_consen 138 LFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHHHh
Confidence 666666555543
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=1.2 Score=35.06 Aligned_cols=153 Identities=12% Similarity=0.034 Sum_probs=106.4
Q ss_pred HHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 043380 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139 (246)
Q Consensus 60 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 139 (246)
.....|++.+|..+|....+. .+-+...--.+..+|...|+.+.|..++..+-. .--.........-|..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPL-QAQDKAAHGLQAQIELL 213 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcc-cchhhHHHHHHHHHHHH
Confidence 346678899999999998886 233455667888999999999999999998766 21112222333456666
Q ss_pred HhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHH
Q 043380 140 LYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHL 218 (246)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (246)
.+.....+ ...+-...-.. | |...-..+...+...|+.+.|.+.+-.+.+.+.+.-... .-..
T Consensus 214 ~qaa~~~~----~~~l~~~~aad--------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~----~Rk~ 277 (304)
T COG3118 214 EQAAATPE----IQDLQRRLAAD--------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE----ARKT 277 (304)
T ss_pred HHHhcCCC----HHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH----HHHH
Confidence 66777776 66665666553 5 667777888899999999999988888777665544444 4567
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 043380 219 LMEAALNDGQVDLALDKLS 237 (246)
Q Consensus 219 li~~~~~~g~~~~a~~~~~ 237 (246)
|++.+.--|.-|.+.--++
T Consensus 278 lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 278 LLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHhcCCCCHHHHHHH
Confidence 8887777775555444443
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.11 E-value=1.3 Score=37.52 Aligned_cols=135 Identities=10% Similarity=-0.002 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
..-.+.++..+-+.|..+.|+++-.+-.. -.....+.|+++.|.++-++ .++...|
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-----------rFeLAl~lg~L~~A~~~a~~-------------~~~~~~W 350 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH-----------RFELALQLGNLDIALEIAKE-------------LDDPEKW 350 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------HHHHHHHCT-HHHHHHHCCC-------------CSTHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH-----------HhHHHHhcCCHHHHHHHHHh-------------cCcHHHH
Confidence 44578888888899999999988755432 12344678999888765332 3467799
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhH
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~ 176 (246)
..|-....+.|+++-|++.|.+... |..|+-.|.-.|+.+. ..++-+....+ | -+
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~----L~kl~~~a~~~-----~------~~ 405 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREK----LSKLAKIAEER-----G------DI 405 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHH----HHHHHHHHHHT-----T-------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHH----HHHHHHHHHHc-----c------CH
Confidence 9999999999999999999998877 7788888889999888 66666665554 2 25
Q ss_pred HHHHHHHHhcCChhHHhhHHHhhC
Q 043380 177 VSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
+....++.-.|+.++..+++.+-.
T Consensus 406 n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 406 NIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcC
Confidence 666666777888888888887753
No 233
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=2.1 Score=38.03 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=67.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhH
Q 043380 116 VFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSP 195 (246)
Q Consensus 116 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 195 (246)
.+.+....|.....-+.+--+.-+...|+-.+ |.++-.+.+ .||-..|-.-+.+++..++|++-+++
T Consensus 671 Q~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~----a~ql~~~Fk---------ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 671 QRTLEDQFGGSFVDLSLHDTVTTLILIGQNKR----AEQLKSDFK---------IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHccchHH----HHHHHHhcC---------CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 33444334444444455666667777788888 776655542 37778888888888888888888877
Q ss_pred HHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 196 YRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
-++... .. -|.-++.+|.+.|+.++|.+++-++
T Consensus 738 Akskks-PI----------Gy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 738 AKSKKS-PI----------GYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhccCC-CC----------CchhHHHHHHhcccHHHHhhhhhcc
Confidence 777653 21 2555788888888888888877654
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.90 E-value=0.85 Score=31.89 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=34.5
Q ss_pred HHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCC
Q 043380 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST 204 (246)
Q Consensus 136 i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 204 (246)
.......|++++ |.+.|+.+..+. |.-.-...+--.++.+|.+.+++++|...+++..+.++
T Consensus 17 a~~~l~~~~Y~~----A~~~le~L~~ry---P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 17 AQEALQKGNYEE----AIKQLEALDTRY---PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHhCCHHH----HHHHHHHHHhcC---CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 334455666666 666666666652 11122234455566666666666666666666655444
No 235
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.89 E-value=0.15 Score=41.88 Aligned_cols=135 Identities=12% Similarity=0.037 Sum_probs=87.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH----HhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEM----KSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
|.+|-+.|--.|+++.|....+.= ++ .|-... ...++.+..++.-.|+++. |.+.|+.-......-..-.
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e-fGDrAaeRRA~sNlgN~hiflg~fe~----A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQE-FGDRAAERRAHSNLGNCHIFLGNFEL----AIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHH-hhhHHHHHHhhcccchhhhhhcccHh----HHHHHHHHHHHHHHhcchh
Confidence 334444444467788888776532 22 333222 4578889999999999999 9988886443200000112
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhC------CCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMW------PDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
....+..+|-..|.-..++++|..++.+=. .+..|.. .++.+|-.+|...|.-++|+.+.+.-++
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~------RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL------RACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344667778888888888899988877522 1211211 1788999999999999999988765443
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.88 E-value=0.74 Score=32.17 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 22 AVIEASREAQRIDEAYQILESVEKGLEPD---SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
.-.....+.|++++|.+.|+.+....+.+ ...--.++.+|.+.+++++|...+++.++. ....-..-|..
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-------hP~hp~vdYa~ 87 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-------HPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCCCccHHH
Confidence 33445578899999999999998655443 344567899999999999999999999987 22222346666
Q ss_pred HHHHHHccCCH
Q 043380 99 LLMGFRHAKDL 109 (246)
Q Consensus 99 ll~~~~~~~~~ 109 (246)
.+.+++.-...
T Consensus 88 Y~~gL~~~~~~ 98 (142)
T PF13512_consen 88 YMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHh
Confidence 66666544433
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.84 E-value=2.2 Score=36.45 Aligned_cols=162 Identities=10% Similarity=0.052 Sum_probs=107.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH--hCCCCCH-----HHHHHHHHHHHhc----CCcchHHHHHHHHHhccCCCCCCCC
Q 043380 21 NAVIEASREAQRIDEAYQILESVE--KGLEPDS-----LSYNILISACIKT----KKLDVTMPFNEQLKDNGQKCSSGGF 89 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~-----~t~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~ 89 (246)
..++...+=.|+=+.+++.+.+.. .++.-.. -.|+.++..++.. ...+.|.+++..+.+.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------- 262 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------- 262 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---------
Confidence 456666667899999999987764 2333222 2355666555543 4567899999999986
Q ss_pred CccHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 90 HPDIFTYATLL-MGFRHAKDLQSLLEIVFEMKSCCNL--ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 90 ~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
-|+...|...- +.+...|++++|.+.|+.......- ......+--+.-.+....+|++ |.+.|..+.+.+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~----A~~~f~~L~~~s--- 335 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE----AAEYFLRLLKES--- 335 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH----HHHHHHHHHhcc---
Confidence 68776665443 3356789999999999975541111 1223456667778889999999 999999999862
Q ss_pred CCCCcchhhHHHHHHHHHhcCCh-------hHHhhHHHhhC
Q 043380 167 PGLWPKPHLYVSMMHELAARVDY-------DIVKSPYRRMW 200 (246)
Q Consensus 167 ~~~~p~~~~~~~li~~~~~~g~~-------~~a~~~~~~~~ 200 (246)
.+.+...+|.. ..++...|+. ++|.++|.++.
T Consensus 336 -~WSka~Y~Y~~-a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 336 -KWSKAFYAYLA-AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred -ccHHHHHHHHH-HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 23222222222 2234456777 88888888765
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.78 E-value=0.9 Score=31.58 Aligned_cols=110 Identities=8% Similarity=0.034 Sum_probs=76.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhH
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~ 176 (246)
..++..+...+.+.....+++.+.. .+ ..+...++.++..|++... .. ..+.++. . ++....
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~-~~-~~~~~~~~~li~ly~~~~~-~~----ll~~l~~---~--------~~~yd~ 72 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALK-LN-SENPALQTKLIELYAKYDP-QK----EIERLDN---K--------SNHYDI 72 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHc-cC-ccchhHHHHHHHHHHHHCH-HH----HHHHHHh---c--------cccCCH
Confidence 4677778888899999999999988 65 3677889999999997643 33 4444442 2 234455
Q ss_pred HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc-CChhHHHHHHHH
Q 043380 177 VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND-GQVDLALDKLSN 238 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~ 238 (246)
..+++.|.+.+.++++..++..+.. |...+..+... ++++.|.+++.+
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~--------------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGN--------------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcC--------------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6688888888888888888887742 33344444444 677777777665
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.70 E-value=0.15 Score=27.56 Aligned_cols=40 Identities=23% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNIL 57 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~l 57 (246)
.+|..+-..|.+.|++++|+++|++..+..+-|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3577888999999999999999999875445565555544
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=1.9 Score=34.83 Aligned_cols=153 Identities=9% Similarity=-0.100 Sum_probs=112.0
Q ss_pred hcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHH----HHH
Q 043380 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM----VDA 138 (246)
Q Consensus 63 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~ 138 (246)
..|+..+|...++++.+. .+.|...+.-.=.+|.-.|+.+.-...++.+.. . ..||.+.|+-+ .-+
T Consensus 115 ~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~-wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-K-WNADLPCYSYVHGMYAFG 184 (491)
T ss_pred ccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-c-cCCCCcHHHHHHHHHHhh
Confidence 457788888889999884 777888999999999999999999999998877 2 35665444433 334
Q ss_pred HHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC-CCCCCchhhhHHHH
Q 043380 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS-TGTISPEVQEEAGH 217 (246)
Q Consensus 139 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 217 (246)
+...|-+++ |++.-++..+. -+.|.-+-.++...+-..|++.++.+...+-..+= .+...... -|.
T Consensus 185 L~E~g~y~d----AEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH---NyW 251 (491)
T KOG2610|consen 185 LEECGIYDD----AEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH---NYW 251 (491)
T ss_pred HHHhccchh----HHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh---hhH
Confidence 556899999 99887777664 24566777788888888999999998887764321 11111111 355
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 043380 218 LLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 218 ~li~~~~~~g~~~~a~~~~~~ 238 (246)
...-.++..+.++.|+++|++
T Consensus 252 H~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhhcccchhHHHHHHHH
Confidence 566667788999999999975
No 241
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.66 E-value=1.9 Score=34.85 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH-HHH
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY-ATL 99 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~-~~l 99 (246)
--+-..+.-.|++.+|+.-|.....+-+.+-.++----..|...|+-..|+.=+...++. +||-..- .--
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---------KpDF~~ARiQR 112 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---------KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---------CccHHHHHHHh
Confidence 344455556667777776666655443334444444455677778888888888887765 6774321 111
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC------------CCHHH--HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKSCCNLI------------LDRST--FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~~~~~------------p~~~~--~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (246)
-..+.+.|.++.|..=|+.... ..-. +.... .-..+..+...|+... |+.....+.+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~----ai~~i~~llEi--- 184 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQN----AIEMITHLLEI--- 184 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhh----HHHHHHHHHhc---
Confidence 2335688999999999998887 3211 11111 2234556677888888 99988888875
Q ss_pred CCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 166 NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 166 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..-|...|..=..+|...|++..|..=+....+....+. .++--+-..+...|+.+.++..+++.++-
T Consensus 185 ---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT------e~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 185 ---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT------EGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred ---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch------HHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 344667788888899999999888877666553321111 14445556666777777777777666543
No 242
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=2.6 Score=36.42 Aligned_cols=164 Identities=14% Similarity=0.140 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCCcchHHHHHH--------HHHhccCCCCCC
Q 043380 19 VMNAVIEASREA--QRIDEAYQILESVEKGLEPD-SLSYNILISACIKTKKLDVTMPFNE--------QLKDNGQKCSSG 87 (246)
Q Consensus 19 ~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~-~~t~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~~~~~ 87 (246)
.+.+++..+.+. ....++.+++...-.+.+-+ ....-+++......|+++.|.+++. .+.+.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~------- 413 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA------- 413 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-------
Confidence 445555554443 23677778877776544433 4555667777888999999999999 44443
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC----CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+..|- +...+...+.+.++-+.|-.++++...- ....+. ..++.-....-.+.|+.++ |..+++++.+.
T Consensus 414 ~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e----a~s~leel~k~ 487 (652)
T KOG2376|consen 414 KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE----ASSLLEELVKF 487 (652)
T ss_pred ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH----HHHHHHHHHHh
Confidence 44444 5556777787888777777776654330 001111 2334444555566899999 99999999985
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCC
Q 043380 163 VCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPD 202 (246)
Q Consensus 163 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (246)
..+|..+...++.+|++. +++.|+.+-..+.+.
T Consensus 488 ------n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 488 ------NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred ------CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 568889999999999977 889999988887643
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.44 E-value=0.11 Score=28.09 Aligned_cols=30 Identities=27% Similarity=0.003 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
++..+...|...|++++|+++|++..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 567777888888888888888888777654
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=94.44 E-value=0.43 Score=34.17 Aligned_cols=87 Identities=13% Similarity=-0.076 Sum_probs=41.1
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 141 (246)
...|++++|..+|.-+.-.+ .-+..-|..|-.++-..+++++|...|.......--.|.+ +-....+|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--~f~agqC~l~ 117 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--VFFTGQCQLL 117 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--cchHHHHHHH
Confidence 34555666666665555431 1122234444444455555666655555432222111222 2224455555
Q ss_pred cCChhhhhhHHHHHHHHHHHh
Q 043380 142 SGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.|+.+. |...|+.....
T Consensus 118 l~~~~~----A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAK----ARQCFELVNER 134 (165)
T ss_pred hCCHHH----HHHHHHHHHhC
Confidence 556665 66666555555
No 245
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.41 E-value=0.11 Score=26.70 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888899999999999988843
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.41 E-value=2.8 Score=35.63 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=70.3
Q ss_pred cCCcchHHHHHHHHHhccCCC-------C----------CCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 043380 64 TKKLDVTMPFNEQLKDNGQKC-------S----------SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126 (246)
Q Consensus 64 ~~~~~~a~~~~~~m~~~~~~~-------~----------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 126 (246)
.....+++++|++..+.|-.. . .....|-..+=..|-.++.+.|+.++|.+.|.+|.+.....
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 344677888888777654110 0 11112223334456777788999999999999998723211
Q ss_pred CCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch--hhHHHHHH
Q 043380 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP--HLYVSMMH 181 (246)
Q Consensus 127 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~li~ 181 (246)
-.......|+.++...+.+.+ +..++..-.+. ..|.. ..|+..+-
T Consensus 293 ~~l~IrenLie~LLelq~Yad----~q~lL~kYdDi------~lpkSAti~YTaALL 339 (539)
T PF04184_consen 293 DNLNIRENLIEALLELQAYAD----VQALLAKYDDI------SLPKSATICYTAALL 339 (539)
T ss_pred chhhHHHHHHHHHHhcCCHHH----HHHHHHHhccc------cCCchHHHHHHHHHH
Confidence 224567789999999999999 99999887543 23443 55666553
No 247
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.40 E-value=0.0037 Score=43.94 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=75.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 043380 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMV 136 (246)
Q Consensus 57 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 136 (246)
++..+.+.+.+.....+++.+... +...+....+.++..|++.++.++..++++.. .+ .-...++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-------~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~-----yd~~~~~ 77 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-------NKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NN-----YDLDKAL 77 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-------STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SS-----S-CTHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-------ccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cc-----cCHHHHH
Confidence 455666677778888888888765 44566777888888888887777777776621 11 2223466
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHH
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAG 216 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 216 (246)
..|-+.|.+++ |.-++..+... .. .+..+...++++.|.+++.+... +. .|
T Consensus 78 ~~c~~~~l~~~----a~~Ly~~~~~~--------~~------al~i~~~~~~~~~a~e~~~~~~~-------~~----l~ 128 (143)
T PF00637_consen 78 RLCEKHGLYEE----AVYLYSKLGNH--------DE------ALEILHKLKDYEEAIEYAKKVDD-------PE----LW 128 (143)
T ss_dssp HHHHTTTSHHH----HHHHHHCCTTH--------TT------CSSTSSSTHCSCCCTTTGGGCSS-------SH----HH
T ss_pred HHHHhcchHHH----HHHHHHHcccH--------HH------HHHHHHHHccHHHHHHHHHhcCc-------HH----HH
Confidence 66667777777 66666554332 00 11113344556666644444422 11 67
Q ss_pred HHHHHHHHhcCCh
Q 043380 217 HLLMEAALNDGQV 229 (246)
Q Consensus 217 ~~li~~~~~~g~~ 229 (246)
..+++.|...+..
T Consensus 129 ~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 129 EQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHCTSTCT
T ss_pred HHHHHHHHhcCcc
Confidence 8888877766543
No 248
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.28 E-value=0.32 Score=31.34 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=34.2
Q ss_pred HhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 043380 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS 59 (246)
Q Consensus 9 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~ 59 (246)
....+-|++.+.++.+.+|-|.+++..|.++|+-++..+..+...|..++.
T Consensus 34 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 34 FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 333467777778888888888888888888888776434444445655543
No 249
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.26 E-value=0.28 Score=31.94 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=31.4
Q ss_pred cccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 043380 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS 59 (246)
Q Consensus 11 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~ 59 (246)
..+-|++.+..+.+.+|-|.+++..|.++|+-++..+.+....|..++.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3377888888888888888888888888888887434444446666544
No 250
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.25 E-value=0.63 Score=30.37 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHH
Q 043380 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181 (246)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~ 181 (246)
.-+..+-++.+.. ..+.|++....+.+++|.+.+++.. |.++|+.++.+ +.+....|..++.
T Consensus 26 ~we~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~----AVR~lE~iK~K------~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFAL----AVRILEGIKDK------CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHH----HHHHHHHHHHH------TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHH----HHHHHHHHHHH------ccChHHHHHHHHH
Confidence 3456667777777 7788888888888888888888888 88888888886 3333336666654
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.10 E-value=1.3 Score=30.60 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=79.9
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 141 (246)
.-.|..++..+++.+...+ .+..-||.+|--...+-+=+-..++++.+-+...+. .
T Consensus 13 ildG~V~qGveii~k~v~S----------sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~ 68 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS----------SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------K 68 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH----------S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G
T ss_pred HHhchHHHHHHHHHHHcCc----------CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------h
Confidence 3467888888999888875 456677777766666666677777777776632222 1
Q ss_pred cCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHH
Q 043380 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLME 221 (246)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 221 (246)
+|++.. ....+-.+.. +..-+..-+..+..+|+-|+-.++...+.+.+. .+|. ..-.+..
T Consensus 69 C~NlKr----Vi~C~~~~n~----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~--~~p~----~L~kia~ 128 (161)
T PF09205_consen 69 CGNLKR----VIECYAKRNK----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEE--INPE----FLVKIAN 128 (161)
T ss_dssp -S-THH----HHHHHHHTT-------------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HH----HHHHHHH
T ss_pred hcchHH----HHHHHHHhcc----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccC--CCHH----HHHHHHH
Confidence 333333 3333322211 222334456666777888888888888775322 4444 3567888
Q ss_pred HHHhcCChhHHHHHHHHHHhhcc
Q 043380 222 AALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
+|.+.|+..++-+++++..++|.
T Consensus 129 Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 129 AYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhcchhhHHHHHHHHHHhch
Confidence 88888888888888888887773
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.97 E-value=1.8 Score=31.70 Aligned_cols=101 Identities=9% Similarity=0.032 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD--RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
..+..+...|++.|+.+.|.+.|.++.+ ....|. ...+-.+|+.....+++.. +.....+....... +-.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~----v~~~i~ka~~~~~~--~~d~ 109 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSH----VEKYIEKAESLIEK--GGDW 109 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHhc--cchH
Confidence 4788999999999999999999999998 655555 4557789999999999999 88888777665110 1112
Q ss_pred ch----hhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 172 KP----HLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 172 ~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
+. ..|..+. +...+++..|-+.|-+.....
T Consensus 110 ~~~nrlk~~~gL~--~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 110 ERRNRLKVYEGLA--NLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHH--HHHhchHHHHHHHHHccCcCC
Confidence 22 2222222 234678999999888876443
No 253
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.91 E-value=1.7 Score=31.35 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=83.1
Q ss_pred hhhhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcc
Q 043380 2 FEENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81 (246)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 81 (246)
.+-+....+.+++|+...|..+++.+.+.|++.....++. .++-+|.......+-.+.. ....+..+=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq---~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ---YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh---hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 3455666777888898899999999999988766555443 3345555555544433332 233344444444432
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 82 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
+ ...+..++..+...|++-+|.++...... . +......++.+-...++... -..+|+-...
T Consensus 88 -------L---~~~~~~iievLL~~g~vl~ALr~ar~~~~-~----~~~~~~~fLeAA~~~~D~~l----f~~V~~ff~~ 148 (167)
T PF07035_consen 88 -------L---GTAYEEIIEVLLSKGQVLEALRYARQYHK-V----DSVPARKFLEAAANSNDDQL----FYAVFRFFEE 148 (167)
T ss_pred -------h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCC-c----ccCCHHHHHHHHHHcCCHHH----HHHHHHHHHH
Confidence 0 01345677778888999888888877544 1 11222446777777777666 6666665555
Q ss_pred h
Q 043380 162 R 162 (246)
Q Consensus 162 ~ 162 (246)
+
T Consensus 149 ~ 149 (167)
T PF07035_consen 149 R 149 (167)
T ss_pred h
Confidence 4
No 254
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.90 E-value=1.4 Score=34.69 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccC
Q 043380 32 RIDEAYQILESVE--KGLEPDSLSYNILISACIKT--KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107 (246)
Q Consensus 32 ~~~~a~~~~~~~~--~~~~~~~~t~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 107 (246)
.+-+|+++|+... ..+-.|......+++..... .....-.++.+-+... .+-.++..+...+|..++..+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t------~~~~l~~~vi~~Il~~L~~~~ 216 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST------FSKSLTRNVIISILEILAESR 216 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc------cccCCChhHHHHHHHHHHhcc
Confidence 3566777777443 23566778888888887762 2345555566666543 245788889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHH
Q 043380 108 DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 157 (246)
+|.+-.++++......+..-|...|..+|......|+..- ...+.+
T Consensus 217 dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~----~~kiI~ 262 (292)
T PF13929_consen 217 DWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV----MRKIID 262 (292)
T ss_pred cHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH----HHHHhh
Confidence 9999999999887733566678889999999999999887 665554
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=2.8 Score=37.84 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHH----hcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 043380 50 DSLSYNILISACI----KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125 (246)
Q Consensus 50 ~~~t~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 125 (246)
|..+...++..|+ +.|++++|...|-+-+.. ++|.. ++.-|.....+..--.+++.+.+ .|+
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--------le~s~-----Vi~kfLdaq~IknLt~YLe~L~~-~gl 428 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--------LEPSE-----VIKKFLDAQRIKNLTSYLEALHK-KGL 428 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--------CChHH-----HHHHhcCHHHHHHHHHHHHHHHH-ccc
Confidence 3334444444433 467777777777666653 45543 33444444455555555556555 544
Q ss_pred CCCHHHHHHHHHHHHhcCChhh
Q 043380 126 ILDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 126 ~p~~~~~~~li~~~~~~~~~~~ 147 (246)
.+...-+.|+.+|.+.++.+.
T Consensus 429 -a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 429 -ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred -ccchhHHHHHHHHHHhcchHH
Confidence 233444556666666666655
No 256
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.81 E-value=0.87 Score=29.41 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHH
Q 043380 108 DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~ 181 (246)
|.-++.+-++.+.. ..+.|++....+-+++|.+.+++.. |.++|+.++.+ ...+...|..++.
T Consensus 22 D~we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~al----AVR~lE~vK~K------~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFAL----AVRILEAIKDK------CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHH----HHHHHHHHHHH------ccCchhhHHHHHH
Confidence 45566777777777 7788888888888888888888888 88888888765 2333445555543
No 257
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=2 Score=35.33 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=89.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCC---------CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGF---------HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 129 (246)
+.|.+.|++..|..-|++....= . ...+. ..-..+++.|..+|.+.+++..|++..+.... .+ .+|.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l-~-~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~-~~N~ 291 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFL-E-YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE-LD-PNNV 291 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHh-h-ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-cC-CCch
Confidence 45778889999988888865430 0 00011 12234688899999999999999999999988 32 2446
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHH-HHHHHHhcCCh-hHHhhHHHhhCC
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS-MMHELAARVDY-DIVKSPYRRMWP 201 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~-~~a~~~~~~~~~ 201 (246)
-..----.+|...|+++. |+..|+.+.+. .|+...... ++.+-.+.... +...++|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~----A~~df~ka~k~-------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDL----ARDDFQKALKL-------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHH----HHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777889999999999 99999999885 676655544 44444444443 345677777763
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.39 E-value=1.8 Score=29.90 Aligned_cols=90 Identities=14% Similarity=0.008 Sum_probs=71.1
Q ss_pred HHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH---HHHHH
Q 043380 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST---FTAMV 136 (246)
Q Consensus 60 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li 136 (246)
+.+..|+++.|++.|.+.+.. .+-....||.-..++.-.|+.++|++=+++..+-.|-. +... |-.-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg 122 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRG 122 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHH
Confidence 457789999999999999875 45578899999999999999999999999988844433 3333 33334
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..|...|+-+. |..=|+..-+.
T Consensus 123 ~lyRl~g~dd~----AR~DFe~AA~L 144 (175)
T KOG4555|consen 123 LLYRLLGNDDA----ARADFEAAAQL 144 (175)
T ss_pred HHHHHhCchHH----HHHhHHHHHHh
Confidence 46777899999 98888877665
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.31 E-value=0.21 Score=25.68 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 043380 20 MNAVIEASREAQRIDEAYQILES 42 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~ 42 (246)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555544
No 260
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.16 E-value=3.2 Score=32.11 Aligned_cols=159 Identities=8% Similarity=0.049 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-----HH
Q 043380 22 AVIEASREAQRIDEAYQILESVEKGL--EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-----IF 94 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-----~~ 94 (246)
.+..++.+.++.+.|...|++..+.. .|+ ..|...+.+.+.... ...++....... . ..-.++ ..
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~---~~~~~~~~~~~~--~--~~rD~~~~~~A~~ 145 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMAL---DDSALQGFFGVD--R--SDRDPQHARAAFR 145 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhc---chhhhhhccCCC--c--cccCHHHHHHHHH
Confidence 45677889999999999999875322 232 334444554442110 001111111000 0 000111 12
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
++..+++-|=...-..+|..-+..+.. . . ...--.+.+-|.+.|.+.. |..-++.+.+.+ |+.+....
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~-~---l-a~~e~~ia~~Y~~~~~y~A----A~~r~~~v~~~Y---p~t~~~~e 213 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKD-R---L-AKYELSVAEYYTKRGAYVA----VVNRVEQMLRDY---PDTQATRD 213 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHH-H---H-HHHHHHHHHHHHHcCchHH----HHHHHHHHHHHC---CCCchHHH
Confidence 455555555555556777776666655 1 1 1112257778999999999 999999999984 45566678
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
....++.+|...|..++|..+...+.
T Consensus 214 al~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 214 ALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 88899999999999999998887664
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.00 E-value=3.7 Score=32.43 Aligned_cols=105 Identities=7% Similarity=-0.003 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 16 NTIVMNAVIEASREAQRI---DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
-..+...++.+|...+.. ++|..+++.+.+..+-.+..+-.-++.+.+.++.+++.+.+.+|+.. +.-.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--------~~~~ 154 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS--------VDHS 154 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh--------cccc
Confidence 345677788888887775 45666777776544444667777788888889999999999999985 3324
Q ss_pred HHHHHHHHHHH---HccCCHHHHHHHHHHHHhCCCCCCCHH
Q 043380 93 IFTYATLLMGF---RHAKDLQSLLEIVFEMKSCCNLILDRS 130 (246)
Q Consensus 93 ~~~~~~ll~~~---~~~~~~~~a~~~~~~m~~~~~~~p~~~ 130 (246)
...+..++..+ .... ...|...++.+.. ..+.|...
T Consensus 155 e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~-~r~~~~~~ 193 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAEKS-PELAAFCLDYLLL-NRFKSSED 193 (278)
T ss_pred cchHHHHHHHHHHHHhhC-cHHHHHHHHHHHH-HHhCCChh
Confidence 44555555555 4333 4556666666665 45656543
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.93 E-value=2.2 Score=29.52 Aligned_cols=92 Identities=11% Similarity=-0.046 Sum_probs=71.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH---HHHHHHH
Q 043380 25 EASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF---TYATLLM 101 (246)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~---~~~~ll~ 101 (246)
-+.+..|+++.|++.|.+...-.+-....||.--.++.-.|+.++|++=+++..+.. |-. +.. .|.---.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa------g~~-trtacqa~vQRg~ 123 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA------GDQ-TRTACQAFVQRGL 123 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc------Ccc-chHHHHHHHHHHH
Confidence 356789999999999988765456788999999999999999999999998888762 222 222 3444445
Q ss_pred HHHccCCHHHHHHHHHHHHhCCC
Q 043380 102 GFRHAKDLQSLLEIVFEMKSCCN 124 (246)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~ 124 (246)
.|...|+.+.|..=|+...+ .|
T Consensus 124 lyRl~g~dd~AR~DFe~AA~-LG 145 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQ-LG 145 (175)
T ss_pred HHHHhCchHHHHHhHHHHHH-hC
Confidence 57788999999998888777 55
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.90 E-value=2.2 Score=29.53 Aligned_cols=60 Identities=15% Similarity=0.026 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHH
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m 159 (246)
..+...+......|+-++-.+++..+.+ . -.+++...-.+..+|.+.|+..+ +.+++.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n-~~~~p~~L~kia~Ay~klg~~r~----~~ell~~A 146 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-N-EEINPEFLVKIANAYKKLGNTRE----ANELLKEA 146 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-c-cCCCHHHHHHHHHHHHHhcchhh----HHHHHHHH
Confidence 3444555555555655555555555543 1 22444445555556666666555 55555544
No 264
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.66 E-value=6 Score=33.95 Aligned_cols=167 Identities=10% Similarity=0.073 Sum_probs=119.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 043380 46 GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125 (246)
Q Consensus 46 ~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 125 (246)
....|....-+++..++.+....-++.+-.+|..- --+...|-.++.+|..+ ..++-..+|+++.+ ..
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve-~d- 128 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVE-YD- 128 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hc-
Confidence 44667778888999999998888899999999886 36777899999999988 67788899998888 43
Q ss_pred CCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc------hhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK------PHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 126 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
-+.....--+..+...++... +...|.....+ +.|- ...|..++.. -..+.+....+...+
T Consensus 129 -fnDvv~~ReLa~~yEkik~sk----~a~~f~Ka~yr------fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~ki 195 (711)
T COG1747 129 -FNDVVIGRELADKYEKIKKSK----AAEFFGKALYR------FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKI 195 (711)
T ss_pred -chhHHHHHHHHHHHHHhchhh----HHHHHHHHHHH------hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 355555544444445588888 88888888775 3341 1345555532 145677777777777
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 200 WPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.... |.....+ .+.-+-.-|.-..++++|++++..+.+
T Consensus 196 qt~l-g~~~~~V---l~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 196 QTKL-GEGRGSV---LMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHhh-ccchHHH---HHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 6543 3233333 566677788889999999999886654
No 265
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=1.2 Score=39.44 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=82.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
+.+--+.-+...|+-.+|.++-.+.+- ||...|..=+.+++..++|++ -+++-+.++ .+.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kwee----LekfAkskk-----------sPI 745 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEE----LEKFAKSKK-----------SPI 745 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHH----HHHHHhccC-----------CCC
Confidence 344445556667999999988777766 899999999999999999998 554433332 145
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHH
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 237 (246)
-|.-++.+|.+.|+.++|.+++-++... .-.+.+|.+.|++.+|.++--
T Consensus 746 Gy~PFVe~c~~~~n~~EA~KYiprv~~l--------------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 746 GYLPFVEACLKQGNKDEAKKYIPRVGGL--------------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred CchhHHHHHHhcccHHHHhhhhhccCCh--------------HHHHHHHHHhccHHHHHHHHH
Confidence 5667999999999999999999887521 136788899999988887643
No 266
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=1.4 Score=35.16 Aligned_cols=102 Identities=15% Similarity=0.219 Sum_probs=72.0
Q ss_pred cccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCC
Q 043380 11 EHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKG----LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86 (246)
Q Consensus 11 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 86 (246)
.|.+.++.+-..++..-....++++++..+-.+++. ..|+. +-.+.++.+.+ -++++++.+...=++-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqY------ 129 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQY------ 129 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchh------
Confidence 345556666666677666678889998888777642 12222 22344444444 3467787777777776
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 87 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
|+-||..+++.+|+.+.+.+++.+|.++...|..
T Consensus 130 -GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 130 -GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred -ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8999999999999999999999998888777665
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.42 E-value=3.2 Score=30.29 Aligned_cols=199 Identities=17% Similarity=0.056 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEK--GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
...+......+...+.+..+...+..... ........+......+...+.+..+.+.+...... ...+ ..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~ 130 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-------DPDP-DL 130 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-------CCCc-ch
Confidence 56777888888888999998888877653 34556666777777778888889999999988875 2222 12
Q ss_pred HHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 95 TYATLLM-GFRHAKDLQSLLEIVFEMKSCCNLIL----DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 95 ~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
....... .+...|+++.|...+..... ..| ....+......+...++.+. +...+...... .
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~------~ 197 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEE----ALELLEKALKL------N 197 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHH----HHHHHHHHHhh------C
Confidence 2233333 78889999999999999855 333 24445555555778889999 99999998875 3
Q ss_pred Cc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 170 WP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 170 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
.. ....+..+-..+...++++.+...+......... ... .+..+...+...+..+.+...+......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAE----ALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHH----HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 4677888888888899999999999988754322 011 3444444444777788888888776554
No 268
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=3.2 Score=34.38 Aligned_cols=169 Identities=11% Similarity=-0.014 Sum_probs=106.5
Q ss_pred CCHHHHHHHHH-HHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH--HccCCHHHHHHHHHHHHhCCCC
Q 043380 49 PDSLSYNILIS-ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF--RHAKDLQSLLEIVFEMKSCCNL 125 (246)
Q Consensus 49 ~~~~t~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~ 125 (246)
|...+|-.+-. ++...+++++|.+.=...++. .+ ...+...+++. --.++.+.|...|++-.. +
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl---------d~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---l 232 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL---------DA-TNAEALYVRGLCLYYNDNADKAINHFQQALR---L 232 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc---------cc-chhHHHHhcccccccccchHHHHHHHhhhhc---c
Confidence 33344443322 334567888888776666654 22 22445555553 356788899999988877 4
Q ss_pred CCCHHHH-------------HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHH
Q 043380 126 ILDRSTF-------------TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192 (246)
Q Consensus 126 ~p~~~~~-------------~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 192 (246)
.|+-..- ..=-.-..+.|++.. |.+.|.+-...+.. ++.|+...|.....+..+.|+..+|
T Consensus 233 dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~----A~E~Yteal~idP~--n~~~naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 233 DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK----AYECYTEALNIDPS--NKKTNAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH----HHHHHHHhhcCCcc--ccchhHHHHHHhHhhhcccCCchhh
Confidence 4553221 111233456788898 99999988776332 5678888888888889999999999
Q ss_pred hhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..--+.....+...+. +|-.=..++...+++++|.+-|+...+.
T Consensus 307 isdc~~Al~iD~syik------all~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 307 ISDCNEALKIDSSYIK------ALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhcCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9888877653321111 2222233445567788888887766543
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.24 E-value=10 Score=35.79 Aligned_cols=194 Identities=14% Similarity=0.067 Sum_probs=102.1
Q ss_pred cCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh-C--------------CCCCHHHHHHHHH----------HHHhcCCc
Q 043380 15 LNTIVMNAVIEASREAQ--RIDEAYQILESVEK-G--------------LEPDSLSYNILIS----------ACIKTKKL 67 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~-~--------------~~~~~~t~~~li~----------~~~~~~~~ 67 (246)
|+ .-.-.+|.+|.+.+ .++.|+......+. . +.+--..||..+. |-....++
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDP 867 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQKDP 867 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhccCh
Confidence 44 45667889999988 77888877766652 1 1111122332222 22345566
Q ss_pred chHHHHHHHHHhccCCCCCCCCCccHH--HHHHHHHHHHccC--CHHHHHHHHHHHHhCCC--------CCCCHHHH---
Q 043380 68 DVTMPFNEQLKDNGQKCSSGGFHPDIF--TYATLLMGFRHAK--DLQSLLEIVFEMKSCCN--------LILDRSTF--- 132 (246)
Q Consensus 68 ~~a~~~~~~m~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~--------~~p~~~~~--- 132 (246)
.+-+.++++++.. ......+..|.. -|...+..+.++| -+++++.+.++ .| ..||...+
T Consensus 868 kEyLP~L~el~~m--~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~k----h~Ly~~aL~ly~~~~e~~k~i 941 (1265)
T KOG1920|consen 868 KEYLPFLNELKKM--ETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKK----HGLYDEALALYKPDSEKQKVI 941 (1265)
T ss_pred HHHHHHHHHHhhc--hhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHh----cccchhhhheeccCHHHHHHH
Confidence 7777777776643 011112333332 4556666666666 45555554332 22 24565544
Q ss_pred -HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchh
Q 043380 133 -TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV 211 (246)
Q Consensus 133 -~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (246)
.+....+...+.+++ |--.|+..-+. ..-+.+|-.+|+|++|..+..++........
T Consensus 942 ~~~ya~hL~~~~~~~~----Aal~Ye~~Gkl--------------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~---- 999 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDE----AALMYERCGKL--------------EKALKAYKECGDWREALSLAAQLSEGKDELV---- 999 (1265)
T ss_pred HHHHHHHHHHhccccH----HHHHHHHhccH--------------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHH----
Confidence 344445555667777 66666554332 3356677777777777777776653221000
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 212 QEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
.+-..|+.-+..+++.-+|-++..+-
T Consensus 1000 --~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1000 --ILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred --HHHHHHHHHHHHcccchhHHHHHHHH
Confidence 02234555555555555555555443
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.18 E-value=4.4 Score=31.33 Aligned_cols=52 Identities=21% Similarity=0.084 Sum_probs=22.4
Q ss_pred HHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 182 ELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 182 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
-|.+.|.+..|..-+++|.+.-+..... ....-.|.++|-..|..++|.+.-
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~---~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAV---REALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccch---HHHHHHHHHHHHHhCChHHHHHHH
Confidence 3444555555555555544332111111 113444555555555555554443
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.86 E-value=5.3 Score=34.05 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHH
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEP--DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYA 97 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~ 97 (246)
-.+-.++-+.|+.++|.+.|.+|.+..++ +......|+.++...+.+.++..++.+--+. ..+.+ ...|+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-------~lpkSAti~YT 335 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-------SLPKSATICYT 335 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-------cCCchHHHHHH
Confidence 34555666789999999999998643333 3456778999999999999999999997543 22222 34788
Q ss_pred HHHHHHHccCC
Q 043380 98 TLLMGFRHAKD 108 (246)
Q Consensus 98 ~ll~~~~~~~~ 108 (246)
..+--+.+.++
T Consensus 336 aALLkaRav~d 346 (539)
T PF04184_consen 336 AALLKARAVGD 346 (539)
T ss_pred HHHHHHHhhcc
Confidence 87766555544
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.78 E-value=2.7 Score=39.41 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHH------hCCCCCHHHHHHHHHHHH----hcCCcchHHHHHHHHHhccCCCCC
Q 043380 19 VMNAVIEASREAQ--RIDEAYQILESVE------KGLEPDSLSYNILISACI----KTKKLDVTMPFNEQLKDNGQKCSS 86 (246)
Q Consensus 19 ~~~~li~~~~~~g--~~~~a~~~~~~~~------~~~~~~~~t~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~ 86 (246)
-|...+....+.| .++++..+.++-. .-.+|+...+.-...+|+ ....+++|.-+|+..-+.
T Consensus 895 ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl------ 968 (1265)
T KOG1920|consen 895 RYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL------ 968 (1265)
T ss_pred HHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH------
Confidence 4555566666666 5666666655421 134677777766665554 467888888877765433
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc
Q 043380 87 GGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST--FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164 (246)
Q Consensus 87 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 164 (246)
.-.+.+|..+|+|.+|+.+-.++.. . .|... --.|+.-+...++.-+ |-++..+..+.
T Consensus 969 ----------ekAl~a~~~~~dWr~~l~~a~ql~~-~---~de~~~~a~~L~s~L~e~~kh~e----Aa~il~e~~sd-- 1028 (1265)
T KOG1920|consen 969 ----------EKALKAYKECGDWREALSLAAQLSE-G---KDELVILAEELVSRLVEQRKHYE----AAKILLEYLSD-- 1028 (1265)
T ss_pred ----------HHHHHHHHHhccHHHHHHHHHhhcC-C---HHHHHHHHHHHHHHHHHcccchh----HHHHHHHHhcC--
Confidence 3567888899999999999888765 1 23222 2567888888888888 88887777654
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 165 SNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 165 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
..-.+..|++...|++|.++...-..
T Consensus 1029 -----------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1029 -----------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred -----------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 23345566777778888877776653
No 273
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=1.8 Score=34.54 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 108 DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+++++..++..-.. .|+.||.+++..+|+.+.+.+++.+ |.++.-.|..+
T Consensus 115 ~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~----aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKD----AASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHH----HHHHHHHHHHH
Confidence 34455555555555 5555666666666666666666555 55555555444
No 274
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.26 E-value=0.59 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
+++.|...|...|++++|.+++++...-
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 5677777777777777777777776543
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.23 E-value=4.1 Score=29.12 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=45.4
Q ss_pred HHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 95 TYATLLMG---FRHAKDLQSLLEIVFEMKSCCNLILDRSTFT-AMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 95 ~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+.+.|+.. -.+.++.+++..++..+.- +.|...... .-...+...|+|.+ |.++|+++...
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~d----A~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDD----ALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHH----HHHHHHHHhcc
Confidence 44444444 4677899999999999988 677744332 33445778999999 99999998775
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.22 E-value=0.64 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
+|..+-.+|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777776665
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=5.9 Score=30.59 Aligned_cols=186 Identities=13% Similarity=0.034 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC
Q 043380 33 IDEAYQILESVEKGLEPDS----LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108 (246)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 108 (246)
..++.+....-.....||. ..|.-.-.+|....++++|...+.+..+ +.+-+...|.+ ..-
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~--------~yEnnrslfhA-------AKa 73 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK--------GYENNRSLFHA-------AKA 73 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH--------HHHhcccHHHH-------HHH
Confidence 3444444443332345553 3466666777788888888887777764 23333333222 122
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh---------------hhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV---------------VGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~---------------~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
++.|-.+.++|.+ +.--...|+--...|..+|.++. .|+.|+++|++-..--......+.-.
T Consensus 74 yEqaamLake~~k---lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 74 YEQAAMLAKELSK---LSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3333344444433 11112233344444444444443 01115555554433200000011112
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCC--CCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHH
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDST--GTISPEVQEEAGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
..+...-+.+.+..++++|-..|.+-..... ...+.. -..|-..|-.+....++..|+++++.
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~--~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ--CKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH--HHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 2344444555555666655544443221000 000100 00355566666677788888888876
No 278
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=4.3 Score=33.68 Aligned_cols=91 Identities=7% Similarity=-0.043 Sum_probs=69.4
Q ss_pred HHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHH
Q 043380 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDAL 139 (246)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 139 (246)
..+.|++..|.+.|.+.+.. ...+..|+...|...-....+.|+.++|..--++..+ +.|. ...|..-..++
T Consensus 259 ~fk~G~y~~A~E~Yteal~i----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNI----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCH 331 (486)
T ss_pred HhhccchhHHHHHHHHhhcC----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHH
Confidence 35789999999999998764 3346677778888888899999999999999988877 3333 23333334456
Q ss_pred HhcCChhhhhhHHHHHHHHHHHh
Q 043380 140 LYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...++|++ |.+-|+...+.
T Consensus 332 l~le~~e~----AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEE----AVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHH----HHHHHHHHHhh
Confidence 66789999 99999987775
No 279
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.56 E-value=8.9 Score=31.80 Aligned_cols=154 Identities=14% Similarity=0.078 Sum_probs=89.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH-HHHHHHHHHHH
Q 043380 28 REAQRIDEAYQILESVEKGLEPDSLS--YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI-FTYATLLMGFR 104 (246)
Q Consensus 28 ~~~g~~~~a~~~~~~~~~~~~~~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~ll~~~~ 104 (246)
.-.|+.+.|.+-|+.|.. .|.... ..-|.-.--+.|..+.|..+-+..-.. .|.. -.+.+.+...+
T Consensus 131 l~eG~~~~Ar~kfeAMl~--dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~---------Ap~l~WA~~AtLe~r~ 199 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD--DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK---------APQLPWAARATLEARC 199 (531)
T ss_pred HhcCchHHHHHHHHHHhc--ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh---------ccCCchHHHHHHHHHH
Confidence 347999999999999963 232221 222333335677777777776666553 3443 36778888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHhc---CChhhhhhHHHHHHHHHHHhhcCCCCCCcchh-hHHH
Q 043380 105 HAKDLQSLLEIVFEMKSCCNLILDRS--TFTAMVDALLYS---GSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH-LYVS 178 (246)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ 178 (246)
..|||+.|+++.+.-+...-+.++.. .-..|+.+-+.. .+... |...-.+-. ++.||.. .-..
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~----Ar~~A~~a~-------KL~pdlvPaav~ 268 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS----ARDDALEAN-------KLAPDLVPAAVV 268 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH----HHHHHHHHh-------hcCCccchHHHH
Confidence 88999999988887766333455532 223343332221 12222 443333322 2334432 1222
Q ss_pred HHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 179 MMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
-..++.+.|+..++-.+++.+.+..
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcC
Confidence 3456777788888888888776543
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.46 E-value=4.7 Score=28.46 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=40.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTF-TAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...++++++..+++.|.- +.|+..-. ..-...+..+|+|.+ |.++|+++...
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~e----A~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDE----AARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHH----HHHHHHhhhcc
Confidence 458899999999999988 66764322 223445678999999 99999999886
No 281
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.42 E-value=12 Score=33.26 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKT 64 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~ 64 (246)
.+| ++|--|.|+|++++|.++....+.........|...+..|...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 356 7888899999999999999887777777778888999998775
No 282
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.37 E-value=0.85 Score=23.78 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=11.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEM 119 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m 119 (246)
+++.|-..|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444445555555555555554443
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.82 E-value=0.39 Score=33.52 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=61.7
Q ss_pred HHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhH
Q 043380 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEE 214 (246)
Q Consensus 135 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 214 (246)
+|..+.+.+.+.. ...+++.+... +..-+....+.++..|++.++.++..++++.... ..
T Consensus 13 vi~~~~~~~~~~~----l~~yLe~~~~~-----~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-----yd------ 72 (143)
T PF00637_consen 13 VISAFEERNQPEE----LIEYLEALVKE-----NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-----YD------ 72 (143)
T ss_dssp CHHHCTTTT-GGG----CTCCHHHHHHT-----STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-----S-------
T ss_pred HHHHHHhCCCHHH----HHHHHHHHHhc-----ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-----cC------
Confidence 5677777888888 99999999876 4456678899999999999888888888773321 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
...++..|.+.|.+++|.-++.++-.
T Consensus 73 -~~~~~~~c~~~~l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 73 -LDKALRLCEKHGLYEEAVYLYSKLGN 98 (143)
T ss_dssp -CTHHHHHHHTTTSHHHHHHHHHCCTT
T ss_pred -HHHHHHHHHhcchHHHHHHHHHHccc
Confidence 23366677777777777777765543
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.81 E-value=0.79 Score=22.46 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 216 GHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 216 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
+-.+..++.+.|++++|.+.|+++.++-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33466677778888888888888877654
No 285
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.41 E-value=5.8 Score=27.92 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=70.2
Q ss_pred CCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--C--CCCHHHHHHHHHHHHhcCC-hhhhhhHHHHHHHHHH
Q 043380 88 GFHPDI--FTYATLLMGFRHAKDLQSLLEIVFEMKSCCN--L--ILDRSTFTAMVDALLYSGS-IKVVGLYALCIFGEIV 160 (246)
Q Consensus 88 ~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~--~p~~~~~~~li~~~~~~~~-~~~~~~~a~~~~~~m~ 160 (246)
+..++. ...|+++.-....+++.....+++.+..-.. + ..+...|++++.+.+.... --. +..+|+-|+
T Consensus 32 ~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~----~~~Lf~~Lk 107 (145)
T PF13762_consen 32 NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLT----SLTLFNFLK 107 (145)
T ss_pred ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHH----HHHHHHHHH
Confidence 455554 3678888888888999999998888855100 0 1344579999999977776 444 889999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHhcCChh
Q 043380 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYD 190 (246)
Q Consensus 161 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 190 (246)
+. +.+++..-|..||.++.+....+
T Consensus 108 ~~-----~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 108 KN-----DIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred Hc-----CCCCCHHHHHHHHHHHHcCCCCc
Confidence 86 78999999999999987664333
No 286
>PRK11906 transcriptional regulator; Provisional
Probab=89.35 E-value=12 Score=31.64 Aligned_cols=161 Identities=10% Similarity=0.021 Sum_probs=102.9
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHHH--hCCCCC-HHHHHHHHHHHHhc---------CCcchHHHHHHHHH
Q 043380 18 IVM--NAVIEASREA-----QRIDEAYQILESVE--KGLEPD-SLSYNILISACIKT---------KKLDVTMPFNEQLK 78 (246)
Q Consensus 18 ~~~--~~li~~~~~~-----g~~~~a~~~~~~~~--~~~~~~-~~t~~~li~~~~~~---------~~~~~a~~~~~~m~ 78 (246)
..| ...+.+.... ...+.|+.+|.+.. +...|+ ...|..+-.++... ....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 6666665552 23567888898875 334554 44454444443321 23345667777777
Q ss_pred hccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHH
Q 043380 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFG 157 (246)
Q Consensus 79 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 157 (246)
+.+ +-|......+-.+..-.++.+.|...|++... +.|| ..+|...-..+..+|+.++ |.+.++
T Consensus 332 eld--------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~----a~~~i~ 396 (458)
T PRK11906 332 DIT--------TVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEE----ARICID 396 (458)
T ss_pred hcC--------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHH----HHHHHH
Confidence 652 34666666666666777889999999999988 7788 6667777777788999999 999999
Q ss_pred HHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHh
Q 043380 158 EIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRR 198 (246)
Q Consensus 158 ~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (246)
+-.+.+ ..+.-.......++.|+.. ..+.|.+++-+
T Consensus 397 ~alrLs----P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLE----PRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccC----chhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 865541 1222223344444566655 56677766654
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.34 E-value=1.5 Score=21.64 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.|..+-..+...|++++|++.|++..+..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 466777888888888888888888766543
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.33 E-value=1.4 Score=21.86 Aligned_cols=29 Identities=21% Similarity=0.039 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
+|..+..+|...|++++|++.|++..+-.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 57777788888888888888888776543
No 289
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.26 E-value=4.1 Score=30.84 Aligned_cols=80 Identities=10% Similarity=0.012 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
|.+..++.+.+.+.+++|+...++-.+.-+.|..+-+.++..+|-.|++++|..-++-.-+. +....+-..+|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-----~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-----SPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc-----CcccchHHHHHHH
Confidence 34566788889999999999986644334668888899999999999999998776655443 1134455668888
Q ss_pred HHHHH
Q 043380 99 LLMGF 103 (246)
Q Consensus 99 ll~~~ 103 (246)
+|.+-
T Consensus 78 lir~e 82 (273)
T COG4455 78 LIRCE 82 (273)
T ss_pred HHHHH
Confidence 88763
No 290
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=9.8 Score=30.18 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH
Q 043380 23 VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~ 102 (246)
-.......|+..+|..+|.....--+-+...--.+..+|...|+.+.|..++..+-.. --.........-|..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-------~~~~~~~~l~a~i~l 212 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-------AQDKAAHGLQAQIEL 212 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-------chhhHHHHHHHHHHH
Confidence 3445677899999999998876434555677778899999999999999999998765 111222222234455
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHH
Q 043380 103 FRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181 (246)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~ 181 (246)
+.+.....+..++-.+... .| |...=..+...+...|+.+. |.+.+=.+..++. +. -|...-..|+.
T Consensus 213 l~qaa~~~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~----Ale~Ll~~l~~d~---~~-~d~~~Rk~lle 280 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEA----ALEHLLALLRRDR---GF-EDGEARKTLLE 280 (304)
T ss_pred HHHHhcCCCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcc---cc-cCcHHHHHHHH
Confidence 5555555555555555554 25 46666678889999999999 8877777666521 33 34455666666
Q ss_pred HHHhcCChh
Q 043380 182 ELAARVDYD 190 (246)
Q Consensus 182 ~~~~~g~~~ 190 (246)
.+..-|.-|
T Consensus 281 ~f~~~g~~D 289 (304)
T COG3118 281 LFEAFGPAD 289 (304)
T ss_pred HHHhcCCCC
Confidence 666666443
No 291
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.12 E-value=7.3 Score=29.05 Aligned_cols=74 Identities=8% Similarity=0.048 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChh
Q 043380 111 SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190 (246)
Q Consensus 111 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 190 (246)
.|++.|-.+.. .+..-|+.....|..-|. ..+.++ +..++....+.+. ++-.+|+..+.+|...+.+.|+++
T Consensus 124 ~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~K----t~~ll~~~L~l~~--~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 124 EALRRFLQLEG-TPELETAELQYALATYYT-KRDPEK----TIQLLLRALELSN--PDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHH----HHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444444444 333333444444443333 233444 4444444443311 112344444555555555555444
Q ss_pred HH
Q 043380 191 IV 192 (246)
Q Consensus 191 ~a 192 (246)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 43
No 292
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=88.86 E-value=0.53 Score=38.83 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
..|..|-..|.-.|+++.|....+.-......+-.....+.+++.|-.+++-.|+++.|.+.|+.-.
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 4566666666777889988877664221000001111123378889999999999999999987654
No 293
>PRK11906 transcriptional regulator; Provisional
Probab=88.30 E-value=15 Score=31.20 Aligned_cols=160 Identities=11% Similarity=0.021 Sum_probs=100.2
Q ss_pred HHH--HHHHHHHHhcC-----CcchHHHHHHHHHhccCCCCCCCCCccH-HHHHHHHHHHHc---------cCCHHHHHH
Q 043380 52 LSY--NILISACIKTK-----KLDVTMPFNEQLKDNGQKCSSGGFHPDI-FTYATLLMGFRH---------AKDLQSLLE 114 (246)
Q Consensus 52 ~t~--~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~ 114 (246)
..| ..++++..... ..+.|..+|.+..... .+.|+- ..|..+-.++.. ..+..+|.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~ 325 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALE 325 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 456 66777666532 3467888999998331 346653 344444333321 223455666
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHH
Q 043380 115 IVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIV 192 (246)
Q Consensus 115 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a 192 (246)
+-+...+ +.| |......+..+....++++. |...|++.... .||. .+|...-..+.-.|+.++|
T Consensus 326 ~A~rAve---ld~~Da~a~~~~g~~~~~~~~~~~----a~~~f~rA~~L-------~Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 326 LLDYVSD---ITTVDGKILAIMGLITGLSGQAKV----SHILFEQAKIH-------STDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHh---cCCCCHHHHHHHHHHHHhhcchhh----HHHHHHHHhhc-------CCccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666 434 47777777777788888999 99999998774 5665 5566666666778999999
Q ss_pred hhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
.+.+++....++.... ...-...++.|+..+ ++.|++++
T Consensus 392 ~~~i~~alrLsP~~~~----~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 392 RICIDKSLQLEPRRRK----AVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHhccCchhhH----HHHHHHHHHHHcCCc-hhhhHHHH
Confidence 9999996544322211 112333444555554 67777665
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.13 E-value=1.5 Score=21.56 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=16.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
.|..+-..+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666677777666666655
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.99 E-value=13 Score=30.13 Aligned_cols=200 Identities=12% Similarity=0.084 Sum_probs=103.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC-ccHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH-PDIFTYATLLMG 102 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-p~~~~~~~ll~~ 102 (246)
..+.-+.|+++...+....... ..++...|.++... +.++++++...++.....-.. .+. .....|......
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~-~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~----~l~~~~~~s~~~~y~~ 77 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNE-DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLD----ELSALSSESYQRAYPS 77 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccC-CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHH
Confidence 4566778888885555555542 12455555555443 778888888888877664100 000 111233333333
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-----cCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHH
Q 043380 103 FRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY-----SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177 (246)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 177 (246)
..+...+.+..++.+-... . ..+......++..... ..+++. -...+.+-..+... -........+|.
T Consensus 78 l~~lq~L~Elee~~~~~~~-~--~~~~~~~~~l~~~W~~Rl~~~~~~~~~-~~~il~~R~~~l~~---~~~~~~~~~~~l 150 (352)
T PF02259_consen 78 LVKLQQLVELEEIIELKSN-L--SQNPQDLKSLLKRWRSRLPNMQDDFSV-WEPILSLRRLVLSL---ILLPEELAETWL 150 (352)
T ss_pred HHHHhHHHHHHHHHHHHHh-h--cccHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHhc---ccchhHHHHHHH
Confidence 3333334444444433322 1 0011112222221111 111111 00011111112210 001234557899
Q ss_pred HHHHHHHhcCChhHHhhHHHhhCCCCCCC--CCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 178 SMMHELAARVDYDIVKSPYRRMWPDSTGT--ISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+.+.+.+.|+++.|...+..+...+... ..|. ..-.-.+.+-..|+..+|+..+++..+
T Consensus 151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~----v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPR----VFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcc----hHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999987533111 1333 344456677788999999999988876
No 296
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.43 E-value=13 Score=29.49 Aligned_cols=117 Identities=10% Similarity=0.186 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--hhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc
Q 043380 109 LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS--IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186 (246)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~ 186 (246)
+.+|+.+|+....+..+.-|..+...+++......+ ... -.++.+-+... .+-.++..+...+|..++..
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~a----lYEvV~~l~~t----~~~~l~~~vi~~Il~~L~~~ 215 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNA----LYEVVDFLVST----FSKSLTRNVIISILEILAES 215 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhh----HHHHHHHHHhc----cccCCChhHHHHHHHHHHhc
Confidence 455666666332212355677778888887776322 233 45555555543 24678889999999999999
Q ss_pred CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHH
Q 043380 187 VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237 (246)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 237 (246)
+++.+..++++...........+. .|..+|+.-...|+..-..++..
T Consensus 216 ~dW~kl~~fW~~~~~~~~~~~D~r----pW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 216 RDWNKLFQFWEQCIPNSVPGNDPR----PWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ccHHHHHHHHHHhcccCCCCCCCc----hHHHHHHHHHHcCCHHHHHHHhh
Confidence 999999999998775522222222 59999999999999877766654
No 297
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.14 E-value=16 Score=30.27 Aligned_cols=125 Identities=17% Similarity=0.150 Sum_probs=82.3
Q ss_pred HHHHHh---cCCHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHh---------cCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 24 IEASRE---AQRIDEAYQILES-VEKGLEPDSLSYNILISACIK---------TKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 24 i~~~~~---~g~~~~a~~~~~~-~~~~~~~~~~t~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
.-++-| .|+-++|++++.. +.+...++..+|..+.+.|-. ...+++|...|.+.-+. .
T Consensus 186 afALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---------~ 256 (374)
T PF13281_consen 186 AFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI---------E 256 (374)
T ss_pred HHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---------C
Confidence 334455 7999999999988 556667888999988877743 22468888888887764 4
Q ss_pred ccHHHHHHHHHHHHccCC-H---HHHHHHH---HH-HHhCCCC---CCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHH
Q 043380 91 PDIFTYATLLMGFRHAKD-L---QSLLEIV---FE-MKSCCNL---ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~-~---~~a~~~~---~~-m~~~~~~---~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m 159 (246)
||..+=-++...+...|. . .+..++- .. ..+ .|. ..|=+.+.+++.++.-.|+.+. |.+..+.|
T Consensus 257 ~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~-kg~~~~~~dYWd~ATl~Ea~vL~~d~~k----a~~a~e~~ 331 (374)
T PF13281_consen 257 PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR-KGSLEKMQDYWDVATLLEASVLAGDYEK----AIQAAEKA 331 (374)
T ss_pred ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHcCCHHH----HHHHHHHH
Confidence 555432222222323332 2 2233332 22 222 332 3456678899999999999999 99999999
Q ss_pred HHh
Q 043380 160 VKR 162 (246)
Q Consensus 160 ~~~ 162 (246)
...
T Consensus 332 ~~l 334 (374)
T PF13281_consen 332 FKL 334 (374)
T ss_pred hhc
Confidence 875
No 298
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.07 E-value=1.2 Score=24.14 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=18.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 219 LMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 219 li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
|..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777777544
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.06 E-value=8.4 Score=28.75 Aligned_cols=21 Identities=0% Similarity=0.029 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHhcCChhh
Q 043380 127 LDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 127 p~~~~~~~li~~~~~~~~~~~ 147 (246)
+|+..+.+|...|-+.|+++.
T Consensus 176 ~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhh
Confidence 444445555555555555544
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.97 E-value=8.5 Score=33.72 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
..-|..|-++....+++.. |.++|.....
T Consensus 666 ~~Kw~~Lg~~al~~~~l~l----A~EC~~~a~d 694 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPL----ASECFLRARD 694 (794)
T ss_pred hHHHHHHHHHHhhcccchh----HHHHHHhhcc
Confidence 4556667777777777777 7666665543
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.88 E-value=18 Score=30.67 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=112.6
Q ss_pred hcCCHHHHHHHHHHHHh---CCCC------------CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 29 EAQRIDEAYQILESVEK---GLEP------------DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~---~~~~------------~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.++.++|.+.+..-.. +..| |-..=+....++...|++.++..++++++.. +..+...-+.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~---llkrE~~w~~ 167 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER---LLKRECEWNS 167 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH---HhhhhhcccH
Confidence 56778888888755432 1111 2222356777888999999999999999876 1111223578
Q ss_pred HHHHHHHHHHHccCC---------------HHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHhcCC--hhhhhhH
Q 043380 94 FTYATLLMGFRHAKD---------------LQSLLEIVFEMKSC-----CNLILDRSTFTAMVDALLYSGS--IKVVGLY 151 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~---------------~~~a~~~~~~m~~~-----~~~~p~~~~~~~li~~~~~~~~--~~~~~~~ 151 (246)
.+|+.++-.+++.=- ++.+.-..++|... ..+.|-......++....-... ..-
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~---- 243 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPP---- 243 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccH----
Confidence 888886666654311 22333333333320 1244555555555554443221 112
Q ss_pred HHHHHHHHHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChh
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVD 230 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (246)
-.++++.-... -+.|+. -....|+..+.. +.+++..+.+.+.......+.... ..++..++...++.++..
T Consensus 244 ~mq~l~~We~~-----yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~l-i~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 244 LMQILENWENF-----YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEEL-IDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred HHHHHHHHHhh-----ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHhHH
Confidence 33333333443 456765 345556655554 566666666655422111111111 227888999999999999
Q ss_pred HHHHHHHHHHhhc
Q 043380 231 LALDKLSNTITRW 243 (246)
Q Consensus 231 ~a~~~~~~m~~~g 243 (246)
+|.+++.-+.--.
T Consensus 316 ~a~q~l~lL~~ld 328 (549)
T PF07079_consen 316 EAKQYLALLKILD 328 (549)
T ss_pred HHHHHHHHHHhcC
Confidence 9999988776443
No 302
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.77 E-value=2.4 Score=20.91 Aligned_cols=28 Identities=18% Similarity=0.040 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
+|..+-..|...|++++|.+.|++..+-
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5777888888888888888888877653
No 303
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=86.55 E-value=7.2 Score=34.49 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=65.7
Q ss_pred HHHhcCCHHHHHHHHHH-----H----HhCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 26 ASREAQRIDEAYQILES-----V----EKGL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 26 ~~~~~g~~~~a~~~~~~-----~----~~~~-~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
.+..+|+.++|..+..+ | .+.+ ..+..+...+-..+-+...+..|-++|..|-+.
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------------- 776 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------------- 776 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------------
Confidence 34455666666665321 1 1111 233444444444455566777888888887654
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH-----------HHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST-----------FTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-----------~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+++......++|++|..+-+..-+ +.||... |.--=.+|-+.|+-.+ |.++++++...
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E----A~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE----AVQVLEQLTNN 846 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhHHHHHHHHHHhcchHH----HHHHHHHhhhh
Confidence 3567777888899999888777655 5555421 2222345555555555 66666555443
No 304
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.34 E-value=5 Score=27.46 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=35.3
Q ss_pred hcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 043380 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILI 58 (246)
Q Consensus 10 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li 58 (246)
...+-|++.+-..-+.+|-+.+++..|.++|+-++..+.+....|-.++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3347788888888888888888888888888888744444444455443
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.89 E-value=1.5 Score=20.50 Aligned_cols=22 Identities=32% Similarity=0.214 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 043380 216 GHLLMEAALNDGQVDLALDKLS 237 (246)
Q Consensus 216 ~~~li~~~~~~g~~~~a~~~~~ 237 (246)
...+...+...|++++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456667777777777777665
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.46 E-value=11 Score=26.97 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=60.7
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 19 VMNAVIEA---SREAQRIDEAYQILESVEKGLEPD---SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 19 ~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~~~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+.+.||.. -.+.++.+++..++.-++- .+|. ..++..+ .+...|++++|..+|+++.+. .|.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv-LRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~---------~~~ 76 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV-LRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER---------APG 76 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH-hCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc---------CCC
Confidence 34444443 3457888999999988762 2343 3334333 346788999999999998775 344
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 147 (246)
...-..|+..|....+-..=...=+++.+ .+-.|+. ..+++.+....+...
T Consensus 77 ~p~~kALlA~CL~~~~D~~Wr~~A~evle-~~~d~~a---~~Lv~~Ll~~~~~~~ 127 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDPSWRRYADEVLE-SGADPDA---RALVRALLARADLEP 127 (160)
T ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHh-cCCChHH---HHHHHHHHHhccccc
Confidence 33334444444433322222233333444 3322332 234555555555444
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.26 E-value=1.8 Score=21.36 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=18.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666777777777777766655
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.25 E-value=17 Score=32.00 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=72.2
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY 141 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 141 (246)
.+.|+++.|.++-.+. -+..-|..|-++....+++..|.+.|.+... |..|+-.+..
T Consensus 648 l~lgrl~iA~~la~e~-------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~ 704 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-------------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTS 704 (794)
T ss_pred hhcCcHHHHHHHHHhh-------------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhh
Confidence 4567777776655442 3556789999999999999999999888766 6778888888
Q ss_pred cCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 142 SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
.|+-+. ...+-..-++. |. .|.-..+|-..|+++++.+++.+-.
T Consensus 705 ~g~~~~----l~~la~~~~~~-----g~------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 705 SGNAEG----LAVLASLAKKQ-----GK------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred cCChhH----HHHHHHHHHhh-----cc------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 888876 44444444443 22 2445556778899999998887753
No 309
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.16 E-value=9.9 Score=26.07 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 111 SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 111 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+..+-++.+.. ..+.|++.....-+++|.+.+++.. |.++|+-++.+
T Consensus 67 EvrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~----aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFAT----AVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHH----HHHHHHHHHHh
Confidence 45566677777 7788888888888888888888888 88888888775
No 310
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.31 E-value=13 Score=26.86 Aligned_cols=170 Identities=12% Similarity=0.008 Sum_probs=120.5
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHhcCCcchHHHHHHHHHhccCCCCCCCC--
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS-ACIKTKKLDVTMPFNEQLKDNGQKCSSGGF-- 89 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-- 89 (246)
.......+......+...+..+.+.+.+.........+......... .+...++++.|...+.+.... ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~ 163 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-------DPEL 163 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCc
Confidence 34455566667777778888899999998876322222233333333 788999999999999998653 11
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD--RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
......+......+...++.+.+...+..... ..++ ...+..+...+...+.++. |...+......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~----- 231 (291)
T COG0457 164 NELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEE----ALEYYEKALEL----- 231 (291)
T ss_pred cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHH----HHHHHHHHHhh-----
Confidence 12344555555557788999999999999988 3333 6778888889999999999 99999998875
Q ss_pred CCCcc-hhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 168 GLWPK-PHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 168 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
.|+ ...+..+...+...+..+.+...+.......
T Consensus 232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 232 --DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred --CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 333 4445555555557778999998888876543
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.20 E-value=1.5 Score=22.17 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=19.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAY 37 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~ 37 (246)
+-|+..|+.+-..|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 457778888888888888888875
No 312
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.19 E-value=5.8 Score=31.45 Aligned_cols=56 Identities=9% Similarity=-0.021 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEM 119 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 119 (246)
..-+.|..+|.+.+|.++.+..... -+.+...|-.|++.+...||--.|...++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444455555566665555555543 2334445555555555555555555444444
No 313
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.05 E-value=1.4 Score=22.27 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=13.4
Q ss_pred CC-HHHHHHHHHHHHhcCChhh
Q 043380 127 LD-RSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 127 p~-~~~~~~li~~~~~~~~~~~ 147 (246)
|+ ...|+.+...|...|++++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHh
Confidence 44 5666666666666666666
No 314
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.00 E-value=29 Score=30.41 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=75.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF-TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
+-..|+.||.---...+.+.+..+++.+.. -.|-..-| -.....-.+.|..+. +.++|++-.+ ++.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~---kyPl~~gyW~kfA~~E~klg~~~~----s~~Vfergv~------aip 110 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS---KYPLCYGYWKKFADYEYKLGNAEN----SVKVFERGVQ------AIP 110 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHH------hhh
Confidence 334555555555555555666666666665 34554433 345555556677777 7777777666 355
Q ss_pred cchhhHHHHHHHHH-hcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 171 PKPHLYVSMMHELA-ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 171 p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+...|...+.-++ ..|+.+.....|+.............. .|...|+--..++++....++++++++
T Consensus 111 ~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~---lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 111 LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDP---LWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccH---HHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 55555555443333 345566666666665432211111111 466677766777777777777766654
No 315
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.95 E-value=20 Score=27.85 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
|-...|+.-+.. .+.|++++|.+.|+.+..+. .+-+-...+--.++-++-+.++++.|....++.....+-.||
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 334455554444 56788999999999998761 111223446666777788899999999999988883444444
Q ss_pred HHHHHHHHHHHHhcC
Q 043380 129 RSTFTAMVDALLYSG 143 (246)
Q Consensus 129 ~~~~~~li~~~~~~~ 143 (246)
..|...|.+++..-
T Consensus 107 -~dY~~YlkgLs~~~ 120 (254)
T COG4105 107 -ADYAYYLKGLSYFF 120 (254)
T ss_pred -hhHHHHHHHHHHhc
Confidence 33555555555433
No 316
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.92 E-value=26 Score=29.23 Aligned_cols=172 Identities=13% Similarity=0.036 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--------
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC-------- 123 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------- 123 (246)
..+.-+-..|..+|+++.|.+.|.+..+-= ......+..|-.+|..-.-.|+|..+..+..+..+ .
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-----Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s-t~~~~~~~~ 224 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYC-----TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES-TPDANENLA 224 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhh-----cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh-CchhhhhHH
Confidence 446678888899999999999999966530 01123445677778888888999888887777666 2
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC-CCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 124 -NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN-PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 124 -~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
.+.+-...+..+...+.+ .++. |.+.|=.....-+.. .=+.|...+....+.+++--++-+.-..+.....-
T Consensus 225 q~v~~kl~C~agLa~L~lk--kyk~----aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~F 298 (466)
T KOG0686|consen 225 QEVPAKLKCAAGLANLLLK--KYKS----AAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESF 298 (466)
T ss_pred HhcCcchHHHHHHHHHHHH--HHHH----HHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhh
Confidence 122334444444444433 4555 544443332211111 12456667777777777766655443333332221
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 202 DSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 202 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
...-...|. .+..+..-| ++++...++++++++.
T Consensus 299 k~flel~Pq----lr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 299 KLFLELEPQ----LREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred hhHHhcChH----HHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 111112222 344444444 5667777777777654
No 317
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.86 E-value=25 Score=28.98 Aligned_cols=211 Identities=12% Similarity=0.027 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-HHHH--hCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 19 VMNAVIEASREAQRIDEAYQIL-ESVE--KGLEPD---SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~-~~~~--~~~~~~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+|..+..+.++.|+.++++..- .+|. ...... ...|-.+-+++-+..++.+++.+-..-... .|..|.
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l------pgt~~~ 118 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL------PGTRAG 118 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC------CCCCcc
Confidence 5666677777777777766542 2332 111111 223334444444444445554444333332 233331
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC
Q 043380 93 ---IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165 (246)
Q Consensus 93 ---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (246)
....-++-.+....+.++++++.|+...+...-.-| ..+|-.|-..|....++++ |.-+.....+...
T Consensus 119 ~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~K----al~f~~kA~~lv~- 193 (518)
T KOG1941|consen 119 QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEK----ALFFPCKAAELVN- 193 (518)
T ss_pred cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhH----HhhhhHhHHHHHH-
Confidence 123334556666677889999998877662222222 3578889999999999998 6655554333210
Q ss_pred CCCCC-----cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 166 NPGLW-----PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 166 ~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
+.++. --......|.-++-..|+...|.+.-++..+-....-.........-.+.+.|...|+.+.|+.-|++-.
T Consensus 194 s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 194 SYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 00111 1123345566677888888888888776543211111111111234557778889999999988777643
No 318
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.14 E-value=10 Score=28.05 Aligned_cols=63 Identities=19% Similarity=0.081 Sum_probs=48.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+...+.......+.+......+...+.....|+..+|..++..+...|+.++ |.+..+++..-
T Consensus 111 ~~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~e----A~~~~~~~~~l 173 (193)
T PF11846_consen 111 YAALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEE----ARQWLARARRL 173 (193)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh
Confidence 3344444456777776666666665544477999999999999999999999 99999998875
No 319
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.82 E-value=5.3 Score=24.79 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=37.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhh
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~ 147 (246)
..+..| ...+-++|+..|....++..-.|+ -.++..++.+|+..|++++
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 677889999999998883323344 3568899999999999999
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.58 E-value=30 Score=31.75 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=54.0
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 19 VMNAVIEASR----EAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 19 ~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
+-..++..|+ +.|++++|...|-+--.-+.|+. +|.-|....+..+-..+++.+.+. |+ .+..
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~-------gl-a~~d 432 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKKFLDAQRIKNLTSYLEALHKK-------GL-ANSD 432 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHHhcCHHHHHHHHHHHHHHHHc-------cc-ccch
Confidence 3344555444 57999999988855432234432 344455555666666777777776 33 3444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEM 119 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m 119 (246)
.-+.||.+|.+.++.++-.++.+.-
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcC
Confidence 5567888888888776666555443
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.30 E-value=17 Score=27.76 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=57.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
|.+.-++.+.+.+...+++....+-.+ -+|+ ..+=..++..+|-.|+|++ |..-++..-.- .+...+-.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~k----Al~Ql~l~a~l---~p~~t~~a 72 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEK----ALAQLNLAATL---SPQDTVGA 72 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHH----HHHHHHHHhhc---CcccchHH
Confidence 344556677778889998888777666 2354 5556678999999999999 88766665443 34556667
Q ss_pred hhHHHHHHHHHhc
Q 043380 174 HLYVSMMHELAAR 186 (246)
Q Consensus 174 ~~~~~li~~~~~~ 186 (246)
.+|..+|.+-...
T Consensus 73 ~lyr~lir~ea~R 85 (273)
T COG4455 73 SLYRHLIRCEAAR 85 (273)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888775543
No 322
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.05 E-value=9.6 Score=28.16 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=41.8
Q ss_pred hcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 63 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
...+.+......+.+.+. ....|+..+|..++.++...|+.++|.+...++.. ..|
T Consensus 120 ~~~~~~~l~~~~~~a~~~------l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~---lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERL------LRRRPDPNVYQRYALALALLGDPEEARQWLARARR---LYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCC
Confidence 444544444444444333 13479999999999999999999999999999988 556
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.88 E-value=4 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCN 124 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~ 124 (246)
.|-.+|...|+.+.|.+++++... .|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~-~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE-EG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH-cC
Confidence 467889999999999999999887 54
No 324
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.73 E-value=29 Score=27.65 Aligned_cols=138 Identities=7% Similarity=-0.030 Sum_probs=80.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS-------TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-------~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
+.+-..+.+++++|...+.++.. .|+..|.. +...+...|...|+... --++..+....-+ ...-.-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~-kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~----l~~~i~~sre~m~-~ftk~k 82 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILG-KGVSKDEKTLNEQEATVLELFKLYVSKGDYCS----LGDTITSSREAME-DFTKPK 82 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhc-CCCChhhhhhhHHHHHHHHHHHHHHhcCCcch----HHHHHHhhHHHHH-Hhcchh
Confidence 44556778999999999999999 88876654 45667888999998877 4444433322100 001111
Q ss_pred chhhHHHHHHHHHhcC-ChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 172 KPHLYVSMMHELAARV-DYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
......+||.-+.... .++...++.....+.....-..-.....=..++..+.+.|++.+|+.+...+...
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2344555555544433 3555555555443211000010111113345888999999999999988776543
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.08 E-value=14 Score=29.47 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKD 79 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 79 (246)
.+++.....|..+|.+.+|.++.+....--+.+...|-.+|..+...|+--.|.+-|+.+..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 35566677889999999999999988754477888899999999999998777777776643
No 326
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=79.00 E-value=18 Score=29.06 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=49.8
Q ss_pred HHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 043380 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS 142 (246)
Q Consensus 71 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 142 (246)
.++|+.|... ++.|.-.+|..+.-.+++.-.+.++..+|+.+.. |..-|..|+..||..
T Consensus 263 ~EL~~~L~~~-------~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsm 321 (370)
T KOG4567|consen 263 EELWRHLEEK-------EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSM 321 (370)
T ss_pred HHHHHHHHhc-------CCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHH
Confidence 4678888876 8999999999999999999999999999999988 455577788777763
No 327
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.92 E-value=7.4 Score=22.86 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 67 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
++...+++..+... ..|-.---.+|.+|...|++++|.++++++..
T Consensus 6 ~~~~~~~~~~lR~~---------RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ---------RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555555443 44555555667777777777777777766654
No 328
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.91 E-value=3.7 Score=24.13 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=15.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 043380 218 LLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 218 ~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+|.+|...|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 366677777777777777766654
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.62 E-value=28 Score=26.86 Aligned_cols=61 Identities=8% Similarity=0.059 Sum_probs=31.7
Q ss_pred HHHHHHhc-CChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh---HHHHHHHHHhcCChhHHhhHHHhhCCC
Q 043380 135 MVDALLYS-GSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL---YVSMMHELAARVDYDIVKSPYRRMWPD 202 (246)
Q Consensus 135 li~~~~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (246)
+...|-.. .+++. |+..|++.-+-+. |-+.+... +..+...-+..+++.+|.++|+++-..
T Consensus 119 iaEiyEsdl~d~ek----aI~~YE~Aae~yk---~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 119 IAEIYESDLQDFEK----AIAHYEQAAEYYK---GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHhhhHHHHHH----HHHHHHHHHHHHc---chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333 45555 6666665544321 22223333 333334445567888888888887543
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.56 E-value=15 Score=29.93 Aligned_cols=54 Identities=9% Similarity=0.018 Sum_probs=43.9
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
+-|.+.|.+++|.+.|..-+.. .| |.+++..-..+|.+...+..|+.=.+....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~---------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV---------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc---------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4578899999999999988764 55 899999999999999988877766555544
No 331
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.46 E-value=31 Score=27.23 Aligned_cols=199 Identities=12% Similarity=0.067 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---------hCCCCCH-----HHHHHHHHHHHhcCCc---chHHHHHHHHHhcc
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVE---------KGLEPDS-----LSYNILISACIKTKKL---DVTMPFNEQLKDNG 81 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~---------~~~~~~~-----~t~~~li~~~~~~~~~---~~a~~~~~~m~~~~ 81 (246)
.||.-...+.+..+++.|...+++.- ....|+. .++..+..+|...+.. ++|..+++.+...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e- 116 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE- 116 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-
Confidence 44444444444437777776665431 1223333 4466778888777765 4466666777554
Q ss_pred CCCCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CChhhhhhHHHHHHHH
Q 043380 82 QKCSSGGFHPD-IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS--GSIKVVGLYALCIFGE 158 (246)
Q Consensus 82 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--~~~~~~~~~a~~~~~~ 158 (246)
-|+ ..+|-.-+..+.+.++.+.+.+++.+|.. . +.-....+..++..+... ..... |...+..
T Consensus 117 --------~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~-~-~~~~e~~~~~~l~~i~~l~~~~~~~----a~~~ld~ 182 (278)
T PF08631_consen 117 --------YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR-S-VDHSESNFDSILHHIKQLAEKSPEL----AAFCLDY 182 (278)
T ss_pred --------CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH-h-cccccchHHHHHHHHHHHHhhCcHH----HHHHHHH
Confidence 233 45666677777779999999999999998 3 322344455555554222 23345 6666666
Q ss_pred HHHhhcCCCCCCcchh-hH----HHHHHHHHhcCC------hhHHhhHHHhhCCCCCCCCCchhhhH----HHHHHHHHH
Q 043380 159 IVKRVCSNPGLWPKPH-LY----VSMMHELAARVD------YDIVKSPYRRMWPDSTGTISPEVQEE----AGHLLMEAA 223 (246)
Q Consensus 159 m~~~~~~~~~~~p~~~-~~----~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~li~~~ 223 (246)
+... .+.|... .. -+.+-.....++ ++.+..+++.+.....+...+..... .|+. ...+
T Consensus 183 ~l~~-----r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~ 256 (278)
T PF08631_consen 183 LLLN-----RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKH 256 (278)
T ss_pred HHHH-----HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHH
Confidence 6555 4555443 11 111111222222 44555556644432222233332111 1222 3345
Q ss_pred HhcCChhHHHHHHHH
Q 043380 224 LNDGQVDLALDKLSN 238 (246)
Q Consensus 224 ~~~g~~~~a~~~~~~ 238 (246)
.+.+++++|.++|+-
T Consensus 257 ~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 257 YKAKNYDEAIEWYEL 271 (278)
T ss_pred HhhcCHHHHHHHHHH
Confidence 678999999999974
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.44 E-value=21 Score=25.29 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 29 EAQRIDEAYQILESVE--KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~--~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
..++++++..+++.|+ +--.|...+|-..+ +...|++++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 4677777777777765 21223334444333 35677777777777777765
No 333
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.88 E-value=21 Score=26.27 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCCC---HHHHH-----HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHH
Q 043380 33 IDEAYQILESVEKGLEPD---SLSYN-----ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104 (246)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~---~~t~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~ 104 (246)
++.|+.+|+.+.+...++ ..... ..+-.|.+.|.+++|.+++++..+. |+......-|....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d----------~~~~~~r~kL~~II 154 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD----------PESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----------CCchhHHHHHHHHH
Confidence 678999999997544443 12222 3445688999999999999999875 55555444444444
Q ss_pred ccC
Q 043380 105 HAK 107 (246)
Q Consensus 105 ~~~ 107 (246)
+..
T Consensus 155 ~~K 157 (200)
T cd00280 155 REK 157 (200)
T ss_pred Hcc
Confidence 443
No 334
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.11 E-value=20 Score=27.78 Aligned_cols=65 Identities=20% Similarity=0.030 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
....|..-|.+.|++++|.++|+.+...-...-+..+...+-..+..++.+.|+.+....+-=++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34446666666667777666666655211111222333345666677777777766666655444
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.93 E-value=5.9 Score=18.12 Aligned_cols=28 Identities=29% Similarity=0.152 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
+|..+...+...|+++.|...++...+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4666677777777777777777766544
No 336
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.64 E-value=13 Score=28.78 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
..--|...|.+.|++++|.++|+.+..
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455688888888888888888887753
No 337
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.84 E-value=23 Score=24.27 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
...++++....-...+..+-|. -|-.+.-.|+..- +.+.++|..|...+.|.-.+. -|......+...|++++
T Consensus 45 L~~lLer~~~~f~~~~~Y~nD~-RylkiWi~ya~~~--~~~~~if~~l~~~~IG~~~A~----fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 45 LLELLERCIRKFKDDERYKNDE-RYLKIWIKYADLS--SDPREIFKFLYSKGIGTKLAL----FYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp HHHHHHHHHHHHTTSGGGTT-H-HHHHHHHHHHTTB--SHHHHHHHHHHHHTTSTTBHH----HHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHhhhHhhcCCH-HHHHHHHHHHHHc--cCHHHHHHHHHHcCccHHHHH----HHHHHHHHHHHcCCHHH
Confidence 4555555554421111233333 3444444444433 389999999988877755544 58888899999999999
Q ss_pred HHHHHHH
Q 043380 232 ALDKLSN 238 (246)
Q Consensus 232 a~~~~~~ 238 (246)
|.++|+.
T Consensus 118 A~~I~~~ 124 (126)
T PF08311_consen 118 ADEIYQL 124 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999874
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.42 E-value=26 Score=24.73 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----C--CCCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHhccCCCCCCCCC
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEK----G--LEPDSLSYNILISACIKTKK-LDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~--~~~~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
...|.+++-.+..+++.-.+.+++.+.. . -..+..+|++++++.++... ---+..+|..|++. +.+
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~-------~~~ 112 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN-------DIE 112 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc-------CCC
Confidence 4467777777777888888888777631 0 13456678999998876655 44577888888886 678
Q ss_pred ccHHHHHHHHHHHHccCCHH
Q 043380 91 PDIFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~ 110 (246)
++..-|..++.++.+-...+
T Consensus 113 ~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 113 FTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred CCHHHHHHHHHHHHcCCCCc
Confidence 88889999999887654433
No 339
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=74.67 E-value=9.4 Score=31.91 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCC--CchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI--SPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
.+...|++.++-.||+..|.++++.+.....+.. .+.-...+|..+--+|...+++.+|.+.|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999998875332211 111223378888999999999999999998874
No 340
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.53 E-value=13 Score=23.18 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=24.9
Q ss_pred hcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHHhhH
Q 043380 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIVKSP 195 (246)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~ 195 (246)
...+-.. |+..|....++. .-.|+. .++..++.+|+.-|++.++.++
T Consensus 18 ~~~~~~~----Al~~W~~aL~k~----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQ----ALQKWRKALEKI----TDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHH----HHHHHHHHHhhc----CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555 666666665541 111222 4556666666666666655543
No 341
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=74.11 E-value=50 Score=27.40 Aligned_cols=140 Identities=14% Similarity=0.043 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCCHH
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILDRS 130 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~ 130 (246)
.-+|-+++...+.++++++.|+....-....++.. .....|..|-+.|.+..|+++|.-+.....+. .++.-=..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~--LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM--LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce--eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 34577778888889999999988776421111111 12347889999999999999887664433220 22211122
Q ss_pred HH-----HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 131 TF-----TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 131 ~~-----~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
-| ..+..++...|.... |.+.-++..+..-.+ |-+| -......+.+.|-..|+.+.|+.-++...
T Consensus 203 kyr~~~lyhmaValR~~G~Lgd----A~e~C~Ea~klal~~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGD----AMECCEEAMKLALQH-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhccccc----HHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 334557778899888 888888765541111 2222 23556678888999999999888777643
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.08 E-value=32 Score=25.26 Aligned_cols=135 Identities=16% Similarity=0.049 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
.+...|...|.. ++.+..++|+.-|..+.+ .|...= .-.---.....+..|+-.. |...|+++-.. .-
T Consensus 57 ~sgd~flaAL~l-A~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~----AV~aFdeia~d-----t~ 125 (221)
T COG4649 57 KSGDAFLAALKL-AQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAA----AVAAFDEIAAD-----TS 125 (221)
T ss_pred cchHHHHHHHHH-HHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHH----HHHHHHHHhcc-----CC
Confidence 445567666664 466789999999999988 554221 1112223445677899999 99999999775 22
Q ss_pred Ccchh-hHHHHH--HHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 170 WPKPH-LYVSMM--HELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 170 ~p~~~-~~~~li--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.|-.. -..-|= -.+...|.++.+..-.+.+..+. -+-. .++-..|-.+-.+.|++.+|.++|..+..
T Consensus 126 ~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~---n~mR--~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 126 IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDG---NPMR--HSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCC---ChhH--HHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33322 112222 23456788888888877776443 1111 22567788888899999999999998765
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.89 E-value=58 Score=28.10 Aligned_cols=118 Identities=9% Similarity=-0.028 Sum_probs=78.5
Q ss_pred ccCCHHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 043380 105 HAKDLQSL-LEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183 (246)
Q Consensus 105 ~~~~~~~a-~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~ 183 (246)
..||.-.| .+++.-++. ..-.|+....- -..+...|.++. +...+...... +.....+..++++..
T Consensus 301 ~~gd~~aas~~~~~~lr~-~~~~p~~i~l~--~~i~~~lg~ye~----~~~~~s~~~~~------~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-QQQDPVLIQLR--SVIFSHLGYYEQ----AYQDISDVEKI------IGTTDSTLRCRLRSL 367 (831)
T ss_pred hccCHHHHHHHHHHHHHh-CCCCchhhHHH--HHHHHHhhhHHH----HHHHhhchhhh------hcCCchHHHHHHHhh
Confidence 45665444 456666666 54556644433 334567889999 98888877664 556678899999999
Q ss_pred HhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 184 AARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
...|++++|..+-..|..+.. ..|.+ .....-.--..|.+|++...|+++..
T Consensus 368 ~~l~r~~~a~s~a~~~l~~ei--e~~ei----~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEI--EDEEV----LTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred hchhhHHHHHHHHHHHhcccc--CChhh----eeeecccHHHHhHHHHHHHHHHHHhc
Confidence 999999999999998876543 22221 22222233446778888888887753
No 344
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=73.77 E-value=45 Score=26.71 Aligned_cols=145 Identities=13% Similarity=0.089 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhC-C----CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccC
Q 043380 33 IDEAYQILESVEKG-L----EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107 (246)
Q Consensus 33 ~~~a~~~~~~~~~~-~----~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 107 (246)
.+.|.+.|+....+ . ..+...-..++....+.|..+.-..+++.... .++...-..++.+++...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----------~~~~~~k~~~l~aLa~~~ 215 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----------STSPEEKRRLLSALACSP 215 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----------TSTHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----------cCCHHHHHHHHHhhhccC
Confidence 67788888876643 1 34555666777777778776655555555554 357778889999999999
Q ss_pred CHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCh--hhhhhHHHHHHHH----HHHhhcCCCCCCcchhhHHHHH
Q 043380 108 DLQSLLEIVFEMKSCCN-LILDRSTFTAMVDALLYSGSI--KVVGLYALCIFGE----IVKRVCSNPGLWPKPHLYVSMM 180 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~~~--~~~~~~a~~~~~~----m~~~~~~~~~~~p~~~~~~~li 180 (246)
+.+...++++.... .+ +.+.. . ..++.++...+.. +. +++.+.. +.+. ..++..+...++
T Consensus 216 d~~~~~~~l~~~l~-~~~v~~~d-~-~~~~~~~~~~~~~~~~~----~~~~~~~n~~~i~~~------~~~~~~~~~~~~ 282 (324)
T PF11838_consen 216 DPELLKRLLDLLLS-NDKVRSQD-I-RYVLAGLASSNPVGRDL----AWEFFKENWDAIIKK------FGTNSSALSRVI 282 (324)
T ss_dssp -HHHHHHHHHHHHC-TSTS-TTT-H-HHHHHHHH-CSTTCHHH----HHHHHHHCHHHHHCH------C-TTSHCCHHHH
T ss_pred CHHHHHHHHHHHcC-CcccccHH-H-HHHHHHHhcCChhhHHH----HHHHHHHHHHHHHHH------hcCCChHHHHHH
Confidence 99999999999998 54 54444 3 3344455533333 44 5555543 3332 333333455555
Q ss_pred HHH----HhcCChhHHhhHHHhhC
Q 043380 181 HEL----AARVDYDIVKSPYRRMW 200 (246)
Q Consensus 181 ~~~----~~~g~~~~a~~~~~~~~ 200 (246)
..+ +.....++..+.|+.-.
T Consensus 283 ~~~~~~~~t~~~~~~~~~f~~~~~ 306 (324)
T PF11838_consen 283 KSFAGNFSTEEQLDELEEFFEDKP 306 (324)
T ss_dssp HCCCTT--SHHHHHHHHHHHHHHC
T ss_pred HHHhccCCCHHHHHHHHHHHhhCc
Confidence 543 33445566666665543
No 345
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.15 E-value=13 Score=20.43 Aligned_cols=36 Identities=0% Similarity=0.042 Sum_probs=29.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 043380 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138 (246)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 138 (246)
...+.|-.+++..++++|.+ .|+..+...|..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~-~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQ-AGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHH-cCcccCHHHHHHHHHH
Confidence 34467888899999999988 9999999888877753
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.95 E-value=45 Score=26.45 Aligned_cols=118 Identities=11% Similarity=0.074 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCC------CCCHH--------HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 27 SREAQRIDEAYQILESVEKGL------EPDSL--------SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~~~~------~~~~~--------t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
..-..++..|++..++-.+.. ..+.. ....=|.+++..+++.++..+.-+--+. ...++|.
T Consensus 45 LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-----pEklPpk 119 (309)
T PF07163_consen 45 LVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-----PEKLPPK 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-----cccCCHH
Confidence 334677777877776543211 11111 1234578889999999999988776553 1234444
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-----cCChhhhhhHHHHHH
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY-----SGSIKVVGLYALCIF 156 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-----~~~~~~~~~~a~~~~ 156 (246)
.....|-.|++.+.+..+.++-..... ..-.-+...|.++...|.. .|.+++ |+++.
T Consensus 120 --IleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~e----Aeelv 181 (309)
T PF07163_consen 120 --ILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSE----AEELV 181 (309)
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHH----HHHHH
Confidence 455666778999999999999888777 3222334557777666655 688888 66655
No 347
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=72.89 E-value=5.7 Score=27.46 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.0
Q ss_pred hcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 63 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
..|.-..|..+|.+|+++ |-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~-------G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLER-------GNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhC-------CCCCc--cHHHHHHHh
Confidence 345667899999999999 78888 688888764
No 348
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.96 E-value=46 Score=26.62 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCChhHHhhHHH
Q 043380 177 VSMMHELAARVDYDIVKSPYR 197 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~ 197 (246)
..++..+.+.|.+.+|..+.+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHH
Confidence 446777777777777766554
No 349
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.87 E-value=86 Score=28.78 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=74.5
Q ss_pred hhHHHHhcccCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH----------HHHHHHHHHHhcCCcchH
Q 043380 4 ENEIVNREHWKLNT---IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSL----------SYNILISACIKTKKLDVT 70 (246)
Q Consensus 4 ~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------t~~~li~~~~~~~~~~~a 70 (246)
.+++|+++-..|++ .+-..+|..|...++++...++.+.+++ .||.. .|...++---+-|+-++|
T Consensus 185 ~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~--iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 185 YLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR--IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh--CcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 56778887755544 4456677778888889999999998875 45322 233344433456778888
Q ss_pred HHHHHHHHhccCCCCCCCCCccHHH-----HHHHH--HHHHccCCHHHHHHHHHHHHhCCCCCCCHHH
Q 043380 71 MPFNEQLKDNGQKCSSGGFHPDIFT-----YATLL--MGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131 (246)
Q Consensus 71 ~~~~~~m~~~~~~~~~~~~~p~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 131 (246)
+...-.+.+. +..+.||... |--+. +.|..++..+.|.+.|++.-+ +.|+..+
T Consensus 263 L~~~l~lve~-----eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~s 322 (1226)
T KOG4279|consen 263 LNTVLPLVEK-----EGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYS 322 (1226)
T ss_pred HHHHHHHHHh-----cCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhc
Confidence 8888777765 2356677532 22211 223444556677777777766 6777654
No 350
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=70.54 E-value=11 Score=30.04 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=35.7
Q ss_pred CCCccHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 043380 88 GFHPDIF-TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133 (246)
Q Consensus 88 ~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 133 (246)
-+.||.. -|+..|....+.||+++|+.++++.++ .|+.--..+|-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~-LG~~~Ar~tFi 296 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAER-LGSTSARSTFI 296 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCchHHHHHH
Confidence 3446655 467999999999999999999999999 88765455543
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.44 E-value=40 Score=24.79 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
.+...|...++. .+.+..++|+.-|.++.+.| .|--|.. .---.-......|+-..|...|+++-. ..-.|-
T Consensus 57 ~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg-----~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia~-dt~~P~ 128 (221)
T COG4649 57 KSGDAFLAALKL-AQENKTDDALAAFTDLEKTG-----YGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIAA-DTSIPQ 128 (221)
T ss_pred cchHHHHHHHHH-HHcCCchHHHHHHHHHHhcC-----CCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHhc-cCCCcc
Confidence 344566666664 56677999999999999873 1222221 111222335788999999999999988 333343
Q ss_pred HH-HHHHH--HHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 129 RS-TFTAM--VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 129 ~~-~~~~l--i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
.. -..-| ...+...|.++. .....+.+... +-..-...-..|--+--+.|++.+|.+.|..+..+.
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~d----V~srvepLa~d-----~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDD----VSSRVEPLAGD-----GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHH----HHHHhhhccCC-----CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 22 12222 223456788888 66666655443 333333455677777888999999999999987643
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.12 E-value=45 Score=25.20 Aligned_cols=89 Identities=10% Similarity=0.058 Sum_probs=63.7
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHH
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-----IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTF 132 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~ 132 (246)
+-+.+.|++++|.+-|.+.+.. +++. ...|..-..++.+.+.++.|..-.....+ +.|+ ....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--------cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--------CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--------CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHH
Confidence 4467889999999999999985 3332 23566666677888899888887777666 4454 2222
Q ss_pred HHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 133 ~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
---..+|.+...+++ |+.=|+.+...
T Consensus 172 ~RRAeayek~ek~ee----aleDyKki~E~ 197 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEE----ALEDYKKILES 197 (271)
T ss_pred HHHHHHHHhhhhHHH----HHHHHHHHHHh
Confidence 233447777888888 99999988876
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.09 E-value=74 Score=27.73 Aligned_cols=167 Identities=7% Similarity=0.040 Sum_probs=115.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
..|-...-+++..++.+-...-++.+..+|.. +.-+-..|-.++.+|..+ ..+.-..+|+++.+. .-|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~---------dfnD 131 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-YGESKMALLELLQCYKEN-GNEQLYSLWERLVEY---------DFND 131 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh---------cchh
Confidence 44555666778888877777778888877752 345667788899999988 568888999998886 4455
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD------RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
..+.--+.-+-..++...+...|..... + +.|. ...|.-+..-- ..+.+. .+++...+....
T Consensus 132 vv~~ReLa~~yEkik~sk~a~~f~Ka~y-r-fI~~~q~~~i~evWeKL~~~i--~dD~D~----fl~l~~kiqt~l---- 199 (711)
T COG1747 132 VVIGRELADKYEKIKKSKAAEFFGKALY-R-FIPRRQNAAIKEVWEKLPELI--GDDKDF----FLRLQKKIQTKL---- 199 (711)
T ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHH-H-hcchhhhhhHHHHHHHHHHhc--cccHHH----HHHHHHHHHHhh----
Confidence 5555555555555888888888887766 3 3331 22455444321 345666 777777777663
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
|..--...+.-+-.-|....++.+|.+++..+.+.+
T Consensus 200 g~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 200 GEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 444555777778888888999999999999776544
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.07 E-value=11 Score=17.93 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILIS 59 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~ 59 (246)
|+.+.|..+|+++....+-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788999999887555556666766554
No 355
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=69.98 E-value=23 Score=28.18 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=11.2
Q ss_pred cchhhHHHHHHHHHhcCChhHH
Q 043380 171 PKPHLYVSMMHELAARVDYDIV 192 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a 192 (246)
.|+..|..++.+|.-.|+...+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHH
Confidence 4555555555555555544443
No 356
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.50 E-value=62 Score=26.16 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCChhHHH
Q 043380 215 AGHLLMEAALNDGQVDLAL 233 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~ 233 (246)
+|.-|+.+++.+|+.+-++
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 6888999999999876543
No 357
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=68.37 E-value=13 Score=27.99 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=65.2
Q ss_pred cchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC---------HHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 043380 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD---------LQSLLEIVFEMKSCCNLILD-RSTFTAMV 136 (246)
Q Consensus 67 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~p~-~~~~~~li 136 (246)
.+.|..++..|-...++.+.-+=.-...-|..+..+|++.|- .+...++++...+ .|+..= ++.|+++|
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ld-aGv~kviPHIYssiI 215 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALD-AGVEKVIPHVYSSII 215 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHH-cCCCeeccccceecc
Confidence 467888888887664443333333456678999999999873 4667788888888 887544 56799999
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHH
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIV 160 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~ 160 (246)
+--...-++++ ..+++..++
T Consensus 216 Dk~tG~Trped----V~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVED----VKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHH----HHHHHHHhh
Confidence 88777888888 888887664
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.30 E-value=38 Score=26.81 Aligned_cols=145 Identities=9% Similarity=0.050 Sum_probs=92.2
Q ss_pred CCCCccHHHHHHHHHHH-HccCCHHHHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 87 GGFHPDIFTYATLLMGF-RHAKDLQSLLEIVFEMKSCCNLILDRST---FTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 87 ~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+.+||...=|-.-++- .+..++++|+.-|....+..| ....+- .-.+|..+.+.+++++ ....+.++..-
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEg-EKgeWGFKALKQmiKI~f~l~~~~e----Mm~~Y~qlLTY 94 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEG-EKGEWGFKALKQMIKINFRLGNYKE----MMERYKQLLTY 94 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhccc-ccchhHHHHHHHHHHHHhccccHHH----HHHHHHHHHHH
Confidence 45677765433332221 245588999999999988222 223343 4467889999999999 88888877542
Q ss_pred hcCCCCC--CcchhhHHHHHHHHHhcCChhHHhhHHHh----hCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 163 VCSNPGL--WPKPHLYVSMMHELAARVDYDIVKSPYRR----MWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 163 ~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
-.. .+ .-+..+.+++++.-+.+.+.+...+.++. +.......++-. |-..|-..|...|.+.+..+++
T Consensus 95 IkS--AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK----TNtKLgkl~fd~~e~~kl~KIl 168 (440)
T KOG1464|consen 95 IKS--AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK----TNTKLGKLYFDRGEYTKLQKIL 168 (440)
T ss_pred HHH--HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee----ccchHhhhheeHHHHHHHHHHH
Confidence 000 11 22456788888888888887776666553 222111112222 4566888888899999988888
Q ss_pred HHHHhh
Q 043380 237 SNTITR 242 (246)
Q Consensus 237 ~~m~~~ 242 (246)
+++...
T Consensus 169 kqLh~S 174 (440)
T KOG1464|consen 169 KQLHQS 174 (440)
T ss_pred HHHHHH
Confidence 887643
No 359
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.44 E-value=20 Score=23.80 Aligned_cols=28 Identities=4% Similarity=-0.046 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
.-|..|+..|...|..++|.+++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4677777778888888888888877765
No 360
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.73 E-value=68 Score=28.95 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCN--LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
+|+.+|..+|++-.+.++++.... .. -..=...||..|+...++|+++-+ ....-..+..++. .+.-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~-~~~~~k~~l~~~nlyi~~~~q~~sf~l~--~~~~~~~~~lq~a----~ln~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID-HNKGDKILLPMINLYIREIIQRGSFELT--DVLSNAKELLQQA----RLNGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCcCCeeehhHHHHHHHHHHhcCCccHH--HHHHHHHHHHHHh----hcCCcchH
Confidence 899999999999999999998876 32 122256789999999999988751 0222222222221 34556677
Q ss_pred HHHHHHHH
Q 043380 176 YVSMMHEL 183 (246)
Q Consensus 176 ~~~li~~~ 183 (246)
|..|+.+-
T Consensus 106 ~all~~~s 113 (1117)
T COG5108 106 YALLCQAS 113 (1117)
T ss_pred HHHHHHhh
Confidence 77776653
No 361
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.36 E-value=20 Score=19.73 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH
Q 043380 55 NILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102 (246)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~ 102 (246)
..++.+ -+.|-.+++..++++|.+. |+..+...|..++..
T Consensus 7 GiL~~A-k~~GlI~~~~~~l~~l~~~-------g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 7 GILLLA-KRRGLISEVKPLLDRLQQA-------GFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHH-HHcCChhhHHHHHHHHHHc-------CcccCHHHHHHHHHH
Confidence 334443 5678888999999999988 788888888877754
No 362
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=66.00 E-value=40 Score=26.10 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC----C--------CC---------C---CHHHHHHHHHHHHhcCCh
Q 043380 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC----N--------LI---------L---DRSTFTAMVDALLYSGSI 145 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~--------~~---------p---~~~~~~~li~~~~~~~~~ 145 (246)
..+..+-..+--++...|+...+..+++.+.... + .. + +..+-.-.+-++.+.++.
T Consensus 129 ~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~~ 208 (246)
T PF07678_consen 129 IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGDL 208 (246)
T ss_dssp TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcccH
Confidence 4565555555566677778888888888776521 0 00 0 123333334455566999
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 146 KVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
+. +..+.+.+.++.....|+.-
T Consensus 209 ~~----~~~iv~WL~~qr~~~Ggf~S 230 (246)
T PF07678_consen 209 EE----ASPIVRWLISQRNSGGGFGS 230 (246)
T ss_dssp HH----HHHHHHHHHHCTTTTSSTSS
T ss_pred HH----HHHHHHHHHHhcCCCCccCc
Confidence 99 99999999887332234443
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.44 E-value=26 Score=22.37 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=32.9
Q ss_pred HhcCChhHHhhHHHhhCCCCCCCCCch---hhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 184 AARVDYDIVKSPYRRMWPDSTGTISPE---VQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+.|++..|.+.+.+..........+. ....+.-.+.......|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467888888655554432111111111 1111223345556778999999999988765
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.37 E-value=33 Score=22.58 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
+..+...|++++|+.+.+.+. -||...|-+|-. .+.|-.++...-+.+|-.+| .|....|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~---~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg--------~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLC---YPDLEPWLALCE--WRLGLGSALESRLNRLAASG--------DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCC---CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC--------CHHHHHHHH
Confidence 345566777777777766653 788888877654 45666666666677776653 455555544
No 365
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=65.26 E-value=98 Score=27.30 Aligned_cols=87 Identities=7% Similarity=-0.008 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHhccCCCCCCCCC-ccHHHHHHHHHHHHcc
Q 043380 29 EAQRIDEAYQILESVEKGLEPDSLSYNILISACIK-TKKLDVTMPFNEQLKDNGQKCSSGGFH-PDIFTYATLLMGFRHA 106 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~ 106 (246)
+.|..+.+.++|++-..+++.+...|...+.-++. .|+.+.....|+..+..- |.. -+...|-..|.--...
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~v------G~dF~S~~lWdkyie~en~q 164 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYV------GLDFLSDPLWDKYIEFENGQ 164 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc------ccchhccHHHHHHHHHHhcc
Confidence 56778888888888877888888888777666554 456666777777776641 333 2334566666666667
Q ss_pred CCHHHHHHHHHHHHh
Q 043380 107 KDLQSLLEIVFEMKS 121 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~ 121 (246)
+++.....+|+++.+
T Consensus 165 ks~k~v~~iyeRile 179 (577)
T KOG1258|consen 165 KSWKRVANIYERILE 179 (577)
T ss_pred ccHHHHHHHHHHHHh
Confidence 777777777776665
No 366
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.73 E-value=25 Score=26.65 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=12.5
Q ss_pred HHHHhcCChhHHhhHHHhhCCCC
Q 043380 181 HELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
....+.|+.++|.+.|..+....
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCC
Confidence 33444566666666666665443
No 367
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=64.19 E-value=1e+02 Score=27.22 Aligned_cols=170 Identities=10% Similarity=0.042 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHhccCCCCCCCCCccH--
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK-LDVTMPFNEQLKDNGQKCSSGGFHPDI-- 93 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~p~~-- 93 (246)
...+..++++....|-.....-+.+.++.+-.++...-..+..+...... -.+..+.+.++.+. ....+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~------~~~~~~~~l 413 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAES------PEVQKQPYL 413 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcC------ccccccHHH
Confidence 45667777777777776666666666664333433333333333333222 23334444444433 1334443
Q ss_pred -----HHHHHHHHHHHccCCH------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 94 -----FTYATLLMGFRHAKDL------QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 94 -----~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+|.+++.-+|..... ++....+.+.....--.-|..--...|.+++..|.... ...+......
T Consensus 414 ~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~-----i~~l~~~l~~ 488 (574)
T smart00638 414 RESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSS-----IKVLEPYLEG 488 (574)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhH-----HHHHHHhcCC
Confidence 3555666655544431 23333333322201001233333456777777777554 3344433332
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhc--CChhHHhhHHHhhCCC
Q 043380 163 VCSNPGLWPKPHLYVSMMHELAAR--VDYDIVKSPYRRMWPD 202 (246)
Q Consensus 163 ~~~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~ 202 (246)
....+...-...+.++.+. ...+++..++-.+..+
T Consensus 489 -----~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 489 -----AEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 2233444555566666543 3566666666655433
No 368
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=63.81 E-value=59 Score=24.25 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred hhHHHHhcc--cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHH-HHHhcC--CcchHHHHHH
Q 043380 4 ENEIVNREH--WKLNTIVMNAVIEASREAQRIDEAYQILESVEK---GLEPDSLSYNILIS-ACIKTK--KLDVTMPFNE 75 (246)
Q Consensus 4 ~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~t~~~li~-~~~~~~--~~~~a~~~~~ 75 (246)
..++.++.. +....+-++..+-.....|++++|.+-++.+.. ..+.-...|..+.. +++..+ .+-+|..+|.
T Consensus 14 e~d~~REE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~ 93 (204)
T COG2178 14 EKDKAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYS 93 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334444444 444566677777777888999999888877632 22333445666555 455544 3566777777
Q ss_pred HHHhccCCCC-CCCCCccHHHHHHHHH----------HHHccCCHHHHHHHHHHHHh
Q 043380 76 QLKDNGQKCS-SGGFHPDIFTYATLLM----------GFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 76 ~m~~~~~~~~-~~~~~p~~~~~~~ll~----------~~~~~~~~~~a~~~~~~m~~ 121 (246)
-+.....+-. +.|++|-... +-+.+ -..+.|+++.|.+.++-|..
T Consensus 94 ~l~~~~~ps~~EL~V~~~~Yi-lGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 94 ILKDGRLPSPEELGVPPIAYI-LGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhcCCCCCHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7766532211 2233332211 11111 12345677777777776665
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.73 E-value=35 Score=21.68 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
+.++++...++ |+ .+......+-.+-...|+.+.|.+++..+. .+++ .|..++.++...|+-+-
T Consensus 21 ~~~v~d~ll~~-----~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~---------aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLEQ-----GL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG---------WFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHhc-----CC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc---------HHHHHHHHHHHcCchhh
Confidence 56677777776 53 333334444433346799999999999998 5432 68889999998888766
Q ss_pred HHH
Q 043380 232 ALD 234 (246)
Q Consensus 232 a~~ 234 (246)
|.+
T Consensus 85 A~e 87 (88)
T cd08819 85 ARE 87 (88)
T ss_pred hhc
Confidence 654
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.68 E-value=33 Score=30.30 Aligned_cols=116 Identities=14% Similarity=0.017 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHH
Q 043380 34 DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLL 113 (246)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 113 (246)
+-+-.+|..|++-+.|-....|..--.+...|+...|.+.+...... ...-..+..-.|.+...+.|...+|.
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~-------~p~~~~v~~v~la~~~~~~~~~~da~ 662 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNL-------APLQQDVPLVNLANLLIHYGLHLDAT 662 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhcc-------ChhhhcccHHHHHHHHHHhhhhccHH
Confidence 34555666666545555555554444445578888888888777654 11222334555666677778888888
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 114 EIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.++.+... -. ...+-++..+.++|....+++. |++-|++..+.
T Consensus 663 ~~l~q~l~-~~-~sepl~~~~~g~~~l~l~~i~~----a~~~~~~a~~~ 705 (886)
T KOG4507|consen 663 KLLLQALA-IN-SSEPLTFLSLGNAYLALKNISG----ALEAFRQALKL 705 (886)
T ss_pred HHHHHHHh-hc-ccCchHHHhcchhHHHHhhhHH----HHHHHHHHHhc
Confidence 88888777 32 2335667788899999999999 99999988775
No 371
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.41 E-value=8.8 Score=26.57 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=26.2
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDAL 139 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 139 (246)
.+.|.-.+|-.+|..|.. .|-+||. |+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~-~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLE-RGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHh-CCCCCcc--HHHHHHHh
Confidence 345667788999999999 9999987 77777653
No 372
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.21 E-value=69 Score=24.85 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=15.1
Q ss_pred HhcCChhhhhhHHHHHHHHHHHh
Q 043380 140 LYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+..+++.. |.++|+++...
T Consensus 165 a~leqY~~----Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSK----AIDIYEQVARS 183 (288)
T ss_pred HHHHHHHH----HHHHHHHHHHH
Confidence 44677888 99999998876
No 373
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.47 E-value=17 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=34.8
Q ss_pred CCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHH
Q 043380 47 LEPDSLS-YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99 (246)
Q Consensus 47 ~~~~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 99 (246)
+.||..+ ||..|....+.|++++|+.++++.+.. |+.--..+|-..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~L-------G~~~Ar~tFik~ 298 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERL-------GSTSARSTFISS 298 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCchHHHHHHHH
Confidence 3456555 579999999999999999999999998 555444454433
No 374
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=62.42 E-value=40 Score=24.31 Aligned_cols=69 Identities=10% Similarity=-0.088 Sum_probs=51.0
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
|..--..+..++.-++.=.|..++|.+++.... .+..++. .-.-+++.|.++.+-.+..++=++..++|
T Consensus 110 Gkp~kLss~EAlaAaLYI~G~~deA~~lls~F~-WG~~Fle------LN~e~Le~Y~~a~~s~eVveiq~~~l~~~ 178 (179)
T COG2042 110 GKPFKLSSAEALAAALYIVGFKDEASELLSKFK-WGHTFLE------LNKELLEEYSNAEDSAEVVEIQEEYLEKG 178 (179)
T ss_pred CCcchhchHHHHHHHHHHhCcHHHHHHHHhhCc-ccHHHHH------HhHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 443345678889999999999999999999874 3333322 23448999999999988888877766554
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.83 E-value=1.1e+02 Score=26.62 Aligned_cols=117 Identities=10% Similarity=0.022 Sum_probs=63.5
Q ss_pred cCCHHHH-HHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccC
Q 043380 30 AQRIDEA-YQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107 (246)
Q Consensus 30 ~g~~~~a-~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 107 (246)
.|++-.| .++|.-++ ....|+....-+.| +...|+++.+...+...... +-....+-.++++..-+.|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--------~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--------IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--------hcCCchHHHHHHHhhhchh
Confidence 4444333 34444444 22234444433333 34567777777777666553 4455567777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 108 DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+++.|..+-.-|.. ..+. |+.....-...--..|-+++ +.-.|+++...
T Consensus 372 r~~~a~s~a~~~l~-~eie-~~ei~~iaa~sa~~l~~~d~----~~~~wk~~~~~ 420 (831)
T PRK15180 372 RWREALSTAEMMLS-NEIE-DEEVLTVAAGSADALQLFDK----SYHYWKRVLLL 420 (831)
T ss_pred hHHHHHHHHHHHhc-cccC-ChhheeeecccHHHHhHHHH----HHHHHHHHhcc
Confidence 88887777777766 4332 22222222222223445666 66666665543
No 376
>PRK12357 glutaminase; Reviewed
Probab=61.51 E-value=46 Score=26.97 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=9.2
Q ss_pred hcCChhHHHHHHHHHHh
Q 043380 225 NDGQVDLALDKLSNTIT 241 (246)
Q Consensus 225 ~~g~~~~a~~~~~~m~~ 241 (246)
..|+--...++++.+.+
T Consensus 303 ~~GNSv~G~~~le~ls~ 319 (326)
T PRK12357 303 EYGNSLPGIMLLKHIAK 319 (326)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 45555555555555543
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.29 E-value=55 Score=23.03 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=44.1
Q ss_pred hhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCC
Q 043380 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK 66 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~ 66 (246)
..+.+++.|+++++.- ..++..+.+.+..-.|.++++.++ .+...+..|.-..++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3456777888888764 478888888877799999999987 4444555665555666666663
No 378
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.20 E-value=64 Score=23.79 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHH---HHHHHHhcCC-------cchHHHHHHHHHhccCCCCCCCCCccH-HHHHHHHH
Q 043380 33 IDEAYQILESVEKGLEPDSLSYNI---LISACIKTKK-------LDVTMPFNEQLKDNGQKCSSGGFHPDI-FTYATLLM 101 (246)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~t~~~---li~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~ll~ 101 (246)
++.|.+.++.--..-+.|...++. .+.-++.... +++|.+-|++.+. +.|+. .++..+-.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~---------I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK---------INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH---------H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh---------cCCchHHHHHHHHH
Confidence 455566655432112445554433 3333333333 3445555555554 46775 57777777
Q ss_pred HHHccC----C-------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 102 GFRHAK----D-------LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 102 ~~~~~~----~-------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+|...+ + +++|.+.|+.... ..|+..+|..-+.... . |-++..++.++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~------k----ap~lh~e~~~~ 136 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA------K----APELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH------T----HHHHHHHHHHS
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH------h----hHHHHHHHHHH
Confidence 775543 3 4555566666655 6799999998888753 3 55555566555
No 379
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.81 E-value=77 Score=24.25 Aligned_cols=103 Identities=21% Similarity=0.172 Sum_probs=64.0
Q ss_pred HHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 96 YATLLMGFR--HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 96 ~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
|..++.++- -.++++.|.+.+-. ..+.|+-. .-++.++...|+.+. |..+++.+.-. ..+.
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~----ps~~~~~~--~~Il~~L~~~~~~~l----AL~y~~~~~p~-------l~s~ 141 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH----PSLIPWFP--DKILQALLRRGDPKL----ALRYLRAVGPP-------LSSP 141 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC----CCCCcccH--HHHHHHHHHCCChhH----HHHHHHhcCCC-------CCCH
Confidence 455666653 45677777776632 22333322 247888888999999 99999887432 1222
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHH
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAAL 224 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 224 (246)
.....++.. ..++.+.+|..+.+...... ... .+..++..+.
T Consensus 142 ~~~~~~~~~-La~~~v~EAf~~~R~~~~~~----~~~----l~e~l~~~~~ 183 (226)
T PF13934_consen 142 EALTLYFVA-LANGLVTEAFSFQRSYPDEL----RRR----LFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHhCchhh----hHH----HHHHHHHHHH
Confidence 333444444 66789999999988876421 111 5667777766
No 380
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.31 E-value=52 Score=21.83 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 216 GHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 216 ~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
|..|+..|-..|..++|.+++.++.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 4444444444444444444444443
No 381
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=58.25 E-value=40 Score=24.83 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=54.7
Q ss_pred CcCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHh------CCCCCH-HHHHHHHHHHHhcC-----------CcchHHH
Q 043380 14 KLNTIVMNAVIE---ASREAQRIDEAYQILESVEK------GLEPDS-LSYNILISACIKTK-----------KLDVTMP 72 (246)
Q Consensus 14 ~~~~~~~~~li~---~~~~~g~~~~a~~~~~~~~~------~~~~~~-~t~~~li~~~~~~~-----------~~~~a~~ 72 (246)
+.|+...+..-. -.++.....++.+++++..+ .+.|+- .++..+-++|...+ .+++|..
T Consensus 22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 444444444433 34444555556666654321 345653 66666666665433 2566667
Q ss_pred HHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 043380 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL 125 (246)
Q Consensus 73 ~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 125 (246)
.|++..+. +|+..+|+.-|.... +|-+++.++.+ .+.
T Consensus 102 ~FqkAv~~---------~P~ne~Y~ksLe~~~------kap~lh~e~~~-~~~ 138 (186)
T PF06552_consen 102 YFQKAVDE---------DPNNELYRKSLEMAA------KAPELHMEIHK-QGL 138 (186)
T ss_dssp HHHHHHHH----------TT-HHHHHHHHHHH------THHHHHHHHHH-SSS
T ss_pred HHHHHHhc---------CCCcHHHHHHHHHHH------hhHHHHHHHHH-HHh
Confidence 77777665 899999999999874 46777777766 543
No 382
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.70 E-value=63 Score=22.64 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=48.0
Q ss_pred CcchhhHHHHHHHHHhcCC---hhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 170 WPKPHLYVSMMHELAARVD---YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
.++..+--.+..++.++.+ +.+...+++++.+. -+|...+.....|.-++.+.++++++.++++.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 4555666666677777665 55778889888762 2222222344557778889999999999999887644
No 383
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.56 E-value=1.3e+02 Score=26.18 Aligned_cols=108 Identities=9% Similarity=0.026 Sum_probs=75.5
Q ss_pred HHHHhCCCCCHHHH-HHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH--HccCCHHHHHHHHH
Q 043380 41 ESVEKGLEPDSLSY-NILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF--RHAKDLQSLLEIVF 117 (246)
Q Consensus 41 ~~~~~~~~~~~~t~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~ 117 (246)
....+-..|+..|+ +.+++-+-..+-..+|...|..+... .+|+...|.-++..= ..+-+..-+.++|+
T Consensus 449 ~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--------pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd 520 (568)
T KOG2396|consen 449 SALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--------PPFSLDLFRKMIQFEKEQESCNLANIREYYD 520 (568)
T ss_pred HHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--------CCccHHHHHHHHHHHhhHhhcCchHHHHHHH
Confidence 33344456666665 56777777888888999999888875 456666777666542 22233778888999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 118 EMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 118 ~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.|....| .|+..|-..+.--...|..+. +-.++.+..+.
T Consensus 521 ~a~~~fg--~d~~lw~~y~~~e~~~g~~en----~~~~~~ra~kt 559 (568)
T KOG2396|consen 521 RALREFG--ADSDLWMDYMKEELPLGRPEN----CGQIYWRAMKT 559 (568)
T ss_pred HHHHHhC--CChHHHHHHHHhhccCCCccc----ccHHHHHHHHh
Confidence 8887666 566667766666668888888 87777776654
No 384
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=57.53 E-value=79 Score=23.68 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChhHHhhHHHhhCCCCC------CCCCch---hhhHHHHHHHHHHHhcCChhHHHHHHHH
Q 043380 176 YVSMMHELAARVDYDIVKSPYRRMWPDST------GTISPE---VQEEAGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
=.+++..|.+.-++.++.++++.|..... |...+. ..=...|...+.+.++|.+|.|..++++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34577778888899999999887652211 111111 1112678889999999999999999874
No 385
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.15 E-value=32 Score=19.44 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=24.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 135 (246)
+--++.+.|++++|.+..+.+.+ +.|+-.-.-.|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~---~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE---IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH---HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh---hCCCcHHHHHH
Confidence 44567889999999999999998 77875544433
No 386
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.13 E-value=66 Score=22.63 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=47.9
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChh
Q 043380 114 EIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 190 (246)
++.+.+++ .|++++..= ..++..+...++.-. |.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 7 ~~~~~lk~-~glr~T~qR-~~vl~~L~~~~~~~s----Aeei~~~l~~~-----~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKE-AGLRLTPQR-LAVLELLLEADGHLS----AEELYEELREE-----GPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHH-cCCCcCHHH-HHHHHHHHhcCCCCC----HHHHHHHHHHh-----CCCCCHhHHHHHHHHHHHCCCEE
Confidence 44556666 888877543 246777777777788 99999999987 55566677777778888887543
No 387
>PRK12356 glutaminase; Reviewed
Probab=57.05 E-value=49 Score=26.80 Aligned_cols=25 Identities=8% Similarity=-0.064 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
+-..+...-..+|-+|.+-+..-+.
T Consensus 233 ~~r~v~s~M~TCGmYd~SG~fa~~V 257 (319)
T PRK12356 233 NVPYILAEMTMEGLYERSGDWAYTV 257 (319)
T ss_pred HHHHHHHHHHHcCCccchhhHHHHh
Confidence 3344444445566776666555544
No 388
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.54 E-value=59 Score=26.74 Aligned_cols=86 Identities=9% Similarity=-0.053 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHH
Q 043380 25 EASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104 (246)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~ 104 (246)
+-|.+.|.+++|.+-|..--.-.+.|.+++..-..+|.+..++..|+.=-...+.. | ...+.+|+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----------d----~~Y~KAYS 169 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----------D----KLYVKAYS 169 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----------h----HHHHHHHH
Confidence 45788999999999997654322449999999899999988887776655554442 1 23345555
Q ss_pred ccC-------CHHHHHHHHHHHHhCCCCCCC
Q 043380 105 HAK-------DLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 105 ~~~-------~~~~a~~~~~~m~~~~~~~p~ 128 (246)
+.+ +..+|.+=++...+ +.|.
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~---LEP~ 197 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLA---LEPK 197 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHh---hCcc
Confidence 554 45555555555555 5565
No 389
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=56.25 E-value=1e+02 Score=24.58 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHhcCChhh
Q 043380 127 LDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 127 p~~~~~~~li~~~~~~~~~~~ 147 (246)
.|+..|..++.+|...|+...
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~ 215 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQS 215 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHH
Confidence 466677777777777665555
No 390
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=55.67 E-value=1.4e+02 Score=25.99 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHH
Q 043380 34 DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLL 113 (246)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 113 (246)
.+...+|+.....+.-|+..|...+.-+-+.+.+.+...+|.+|.... +..||.=.|.+ ..-|-..-+++.|.
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H------p~~~dLWI~aA-~wefe~n~ni~saR 160 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH------PNNPDLWIYAA-KWEFEINLNIESAR 160 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC------CCCchhHHhhh-hhHHhhccchHHHH
Confidence 344555655554566788889888888877787899999999998862 33333322221 22244444588888
Q ss_pred HHHHHHHhCCCCCCC
Q 043380 114 EIVFEMKSCCNLILD 128 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~ 128 (246)
.+|..-.+ +.|+
T Consensus 161 alflrgLR---~npd 172 (568)
T KOG2396|consen 161 ALFLRGLR---FNPD 172 (568)
T ss_pred HHHHHHhh---cCCC
Confidence 88887777 5566
No 391
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.00 E-value=54 Score=21.67 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHH
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 110 (246)
.++..+...+..-.|.++++++.+. +..++..|...-|+.+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~-------~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKK-------GPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhCCCEE
Confidence 3556666667778899999999887 66677778777788888877654
No 392
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=54.74 E-value=97 Score=23.85 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
.||--+-+-+...|+.++|..+|.-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4566666667777777777777776543
No 393
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.32 E-value=1.8e+02 Score=26.83 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEP--DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLM 101 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~ 101 (246)
|+-+.+.+.+++|+++-+......+. -...+...|..+.-.|++++|-...-.|... +..-|.--+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----------~~~eWe~~V~ 431 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----------NAAEWELWVF 431 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----------hHHHHHHHHH
Confidence 45566777788888777665432221 3345777888888888888888877777653 3444444444
Q ss_pred HHHccCCH
Q 043380 102 GFRHAKDL 109 (246)
Q Consensus 102 ~~~~~~~~ 109 (246)
-++..++.
T Consensus 432 ~f~e~~~l 439 (846)
T KOG2066|consen 432 KFAELDQL 439 (846)
T ss_pred Hhcccccc
Confidence 44444444
No 394
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.25 E-value=1.9e+02 Score=30.41 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 135 (246)
++-.+-.+++.+..|...+++-...- ..-.....-|-.+...|+..+++|++.-+...-.. +...+. -
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e-----k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~-q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE-----KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQ-Q 1455 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc-----chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHH-H
Confidence 44445667788888888888731110 00022333455555589999999988888774222 222233 4
Q ss_pred HHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 136 i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
|-.....|++.. |...|+.+.+. .|+ ..+++.++..-...|.++.+.-..+...
T Consensus 1456 il~~e~~g~~~d----a~~Cye~~~q~-------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1456 ILEHEASGNWAD----AAACYERLIQK-------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred HHHHHhhccHHH----HHHHHHHhhcC-------CCccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 555677899999 99999999875 444 5667777766666777776666555544
No 395
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=54.18 E-value=55 Score=21.66 Aligned_cols=48 Identities=17% Similarity=0.046 Sum_probs=37.7
Q ss_pred HHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 135 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
++..+...+..-. |.++++.+.+. +..++..|....++.+...|-+.+
T Consensus 6 Il~~l~~~~~~~s----a~ei~~~l~~~-----~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLT----AEEIYERLRKK-----GPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCC----HHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4555666666777 99999999987 667788888888899999887654
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.91 E-value=55 Score=20.82 Aligned_cols=54 Identities=9% Similarity=0.012 Sum_probs=34.3
Q ss_pred HHhcCCHHHHHHHHHHH----HhCCCCC---H--HHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 27 SREAQRIDEAYQILESV----EKGLEPD---S--LSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~----~~~~~~~---~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
..+.|++..|.+-+.+. .....+. . ...-.+...+...|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788988886665543 3222222 1 22223445566789999999999998765
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.50 E-value=2e+02 Score=27.01 Aligned_cols=203 Identities=11% Similarity=0.007 Sum_probs=109.4
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 19 VMNAVIEA-SREAQRIDEAYQILESVEK-----GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 19 ~~~~li~~-~~~~g~~~~a~~~~~~~~~-----~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
.|++|-.. ....|+++.|.++-+.... ...+....+..+..+..-.|++++|..+..+..+. .-..+
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-------a~~~~ 531 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM-------ARQHD 531 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-------HHHcc
Confidence 45555333 3346888999888776532 23456677888888888999999999998887765 23344
Q ss_pred HHHHHHHHHH-----HHccCC--HHHHHHHHHHHHhCC--CCC---CCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHH
Q 043380 93 IFTYATLLMG-----FRHAKD--LQSLLEIVFEMKSCC--NLI---LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160 (246)
Q Consensus 93 ~~~~~~ll~~-----~~~~~~--~~~a~~~~~~m~~~~--~~~---p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~ 160 (246)
...|...... +-..|+ ..+.+..|....... ... +-..++..+..++.+ .+.....+..-+.--.
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~ 608 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGS 608 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhh
Confidence 4433333222 345563 233333344333310 011 223455566666665 2320000221122111
Q ss_pred HhhcCCCCCCcch----hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCC-CCchhhhHHHHHHHHHHHhcCChhHHHHH
Q 043380 161 KRVCSNPGLWPKP----HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGT-ISPEVQEEAGHLLMEAALNDGQVDLALDK 235 (246)
Q Consensus 161 ~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 235 (246)
. ..|.. ..+..|.......|+.++|...++++....... ..+.-..-.+..-+......|+...|...
T Consensus 609 ~-------~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~ 681 (894)
T COG2909 609 V-------YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEW 681 (894)
T ss_pred h-------cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHH
Confidence 1 22322 223477888899999999999999887322111 12111111233333445668888877776
Q ss_pred HHH
Q 043380 236 LSN 238 (246)
Q Consensus 236 ~~~ 238 (246)
..+
T Consensus 682 l~~ 684 (894)
T COG2909 682 LLK 684 (894)
T ss_pred HHh
Confidence 655
No 398
>PRK02287 hypothetical protein; Provisional
Probab=53.22 E-value=42 Score=24.40 Aligned_cols=62 Identities=5% Similarity=-0.092 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
.+..++.-++.=.|..+.|.++++... -+..++. .-.-+++.|.++.+-++..++-++..++
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~-WG~~Fl~------lN~elLe~Y~~~~~~~ev~~~q~~~~~~ 169 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFK-WGHTFLE------LNKEPLEAYARAKDSEEIVEIQKEYLGK 169 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCC-ChHHHHH------HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 577889999999999999999999874 3322222 3345999999999999999888776654
No 399
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.18 E-value=1.2e+02 Score=24.30 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=71.0
Q ss_pred HHHHHHHccCC---HHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 98 TLLMGFRHAKD---LQSLLEIVFEMKSCCNL----ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 98 ~ll~~~~~~~~---~~~a~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
.++...+ |+ .+.|.+.|+.... .+. ..++..-..++....+.|+.+. ...+++.....
T Consensus 134 ~~~~~a~--~~~~~~~~a~~~~~~~~~-~~~~~~~~i~~dlr~~v~~~~~~~g~~~~----~~~l~~~~~~~-------- 198 (324)
T PF11838_consen 134 LLLSLAC--GDPECVAEARELFKAWLD-GNDSPESSIPPDLRWAVYCAGVRNGDEEE----WDFLWELYKNS-------- 198 (324)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHHHH-TTT-TTSTS-HHHHHHHHHHHTTS--HHH----HHHHHHHHHTT--------
T ss_pred HHHHHhc--cchhHHHHHHHHHHHHhc-CCcccccccchHHHHHHHHHHHHHhhHhh----HHHHHHHHhcc--------
Confidence 3355555 55 3667888888877 322 3455666777777788888666 55555555443
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCCh--hHHHHHHH
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV--DLALDKLS 237 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~ 237 (246)
++..--..++.+++...+.+...++++.+...+. +++. -...++.++...+.. +.+.+++.
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~--v~~~----d~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDK--VRSQ----DIRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTST--S-TT----THHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcc--cccH----HHHHHHHHHhcCChhhHHHHHHHHH
Confidence 4677788899999999999999999998876321 2222 133455555534444 66666654
No 400
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.67 E-value=1e+02 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.053 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 216 GHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 216 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.-.+.....+.|+.++|.++|.++...++
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34566677889999999999999987764
No 401
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.62 E-value=94 Score=23.07 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCCCC-CH-H-----HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 109 LQSLLEIVFEMKSCCNLIL-DR-S-----TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~p-~~-~-----~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+.|+.+|+.+.+... .| +. . .--..+..|.+.|.++. |.++++.....
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~----A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKK----AEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHH----HHHHHHHHhcC
Confidence 4778888888887332 22 11 1 12234568999999999 99999998775
No 402
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.94 E-value=55 Score=21.91 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCH
Q 043380 55 NILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109 (246)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 109 (246)
..++......+..-.|.++++.+.+. +...+..|.-.-|..+...|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~-------~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKK-------GPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHT-------TTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhc-------cCCcCHHHHHHHHHHHHHCCeE
Confidence 45677777777788999999999987 6677777776777777776644
No 403
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.84 E-value=50 Score=19.65 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=37.0
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHh
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIK 63 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~ 63 (246)
+.|....++-++..+++..-+++++..+.+.. +| ..+..+|---++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34666689999999999999999999998876 44 4566777666666655
No 404
>PRK10941 hypothetical protein; Provisional
Probab=51.76 E-value=1.2e+02 Score=24.00 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=57.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
..+.|-.+|.+.++++.|+.+.+.+.. +.|+ ..-+---.-.|.+.|.+.. |..=++...+.. .--|+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~----A~~DL~~fl~~~----P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHV----ALSDLSYFVEQC----PEDPIS 251 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHhC----CCchhH
Confidence 466777778889999999999999988 6677 4445555666888899999 888888887651 234555
Q ss_pred hhHHHHHHHHH
Q 043380 174 HLYVSMMHELA 184 (246)
Q Consensus 174 ~~~~~li~~~~ 184 (246)
......+....
T Consensus 252 ~~ik~ql~~l~ 262 (269)
T PRK10941 252 EMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 405
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.53 E-value=1.4e+02 Score=24.61 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCHHHH--HHHHHHHHhcCCcchHHHHHHHHHh-----ccCCCCC
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEK----GLEPDSLSY--NILISACIKTKKLDVTMPFNEQLKD-----NGQKCSS 86 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~ 86 (246)
.....++...-+.++.++|+++++++.. --.|+.+.| ..+.+.+...|+..++.+++++.+. .
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~------ 149 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD------ 149 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc------
Q ss_pred CCCCccHH-HHHHHHHHHHcc
Q 043380 87 GGFHPDIF-TYATLLMGFRHA 106 (246)
Q Consensus 87 ~~~~p~~~-~~~~ll~~~~~~ 106 (246)
+++|+.. .|+.+-+-|-+.
T Consensus 150 -~v~~~Vh~~fY~lssqYyk~ 169 (380)
T KOG2908|consen 150 -GVTSNVHSSFYSLSSQYYKK 169 (380)
T ss_pred -CCChhhhhhHHHHHHHHHHH
No 406
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.51 E-value=1.1e+02 Score=23.32 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=66.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDS-----LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYA 97 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~ 97 (246)
-+-+.+.|++++|.+-|......+++.. ..|..-..++.+.+.++.|..--.+.++. .|+ ....-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---------~pty~kAl~ 172 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---------NPTYEKALE 172 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------CchhHHHHH
Confidence 3456789999999999988765455433 34555556677888888888877777764 342 22223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHH
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 130 (246)
.-..+|.+...+++|+.=|+.+.+ ..|...
T Consensus 173 RRAeayek~ek~eealeDyKki~E---~dPs~~ 202 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILE---SDPSRR 202 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH---hCcchH
Confidence 334468888999999999999998 456543
No 407
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.42 E-value=1.2e+02 Score=23.76 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=82.1
Q ss_pred HHhcCCcchHHHHHHHHHhccCCCCCCCCCccH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHH
Q 043380 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI-FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF-TAMVDA 138 (246)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~ 138 (246)
|....+++.|..-|.+.+.. .|+. .-|+.=+.++.+..+++.+..=-.+..+ +.|+..-- .-+-.+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---------nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQW 87 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHH
Confidence 44556788888888777764 6776 5567778888889999988877777766 77885443 345556
Q ss_pred HHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 139 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
......+++ |+..+.+.......+ .+.|-......|..+--..=...+..++.++..
T Consensus 88 ~l~s~~~~e----aI~~Lqra~sl~r~~-~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 88 LLQSKGYDE----AIKVLQRAYSLLREQ-PFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHhhccccH----HHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 777888999 998888875442211 344555666666666444434455666555543
No 408
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.09 E-value=92 Score=22.54 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=45.7
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHH
Q 043380 119 MKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192 (246)
Q Consensus 119 m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 192 (246)
++. .|+.++..-. .++..+...++.-. |.++++.+.+. +..++..|..-.+..+...|-+.+.
T Consensus 17 L~~-~GlR~T~qR~-~IL~~l~~~~~hlS----a~eI~~~L~~~-----~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 17 CAQ-RNVRLTPQRL-EVLRLMSLQPGAIS----AYDLLDLLREA-----EPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHH-cCCCCCHHHH-HHHHHHHhcCCCCC----HHHHHHHHHhh-----CCCCCcchHHHHHHHHHHCCCEEEE
Confidence 445 7887775544 34444445566777 99999999988 6677888888888888888876543
No 409
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=51.04 E-value=78 Score=24.06 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHH-h-------CCCCCHHHHHHHHHHHHhcC---------CcchHHHHHHHHHhccCCCCCCCCC-ccH
Q 043380 32 RIDEAYQILESVE-K-------GLEPDSLSYNILISACIKTK---------KLDVTMPFNEQLKDNGQKCSSGGFH-PDI 93 (246)
Q Consensus 32 ~~~~a~~~~~~~~-~-------~~~~~~~t~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~~~~~~~~-p~~ 93 (246)
.++.|..++..|. + +-.....-|-.+-.+|.+.| +.+.-.++++-.++.| ++ .=.
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaG-------v~kviP 208 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAG-------VEKVIP 208 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcC-------CCeecc
Confidence 3688999998885 3 22345667889999999987 4466777788888874 33 234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMK 120 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~ 120 (246)
..|.++|+--.-.-+++++.+++..++
T Consensus 209 HIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 209 HVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccceeccccccCCCCHHHHHHHHHHhh
Confidence 578889988777778999999988775
No 410
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.84 E-value=1e+02 Score=24.95 Aligned_cols=72 Identities=6% Similarity=0.019 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHh-------
Q 043380 113 LEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA------- 185 (246)
Q Consensus 113 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~------- 185 (246)
.++|+.+++ .++.|.-.+|--+.-.+...=.+.+ ++.+|+.+... ..+ |..|+..||.
T Consensus 263 ~EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpD----vi~lWDsl~sD-----~~r-----fd~Ll~iCcsmlil~Re 327 (370)
T KOG4567|consen 263 EELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPD----VIRLWDSLLSD-----PQR-----FDFLLYICCSMLILVRE 327 (370)
T ss_pred HHHHHHHHh-cCCCccchhHHHHHHHHhccCCchh----HHHHHHHHhcC-----hhh-----hHHHHHHHHHHHHHHHH
Confidence 456777776 7777777666666666666666777 77788777665 222 5555555544
Q ss_pred ---cCChhHHhhHHHhh
Q 043380 186 ---RVDYDIVKSPYRRM 199 (246)
Q Consensus 186 ---~g~~~~a~~~~~~~ 199 (246)
.|++....++++..
T Consensus 328 ~il~~DF~~nmkLLQ~y 344 (370)
T KOG4567|consen 328 RILEGDFTVNMKLLQNY 344 (370)
T ss_pred HHHhcchHHHHHHHhcC
Confidence 35666666665554
No 411
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=50.61 E-value=57 Score=21.83 Aligned_cols=49 Identities=16% Similarity=0.028 Sum_probs=38.0
Q ss_pred HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 134 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
.++..+...+..-. |.++++.+.+. +...+..|...-+..+...|-+.+
T Consensus 12 ~Il~~l~~~~~~~t----a~ei~~~l~~~-----~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLT----AEEIYDKLRKK-----GPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEE----HHHHHHHHHHT-----TTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCC----HHHHHHHhhhc-----cCCcCHHHHHHHHHHHHHCCeEEE
Confidence 46666667777778 99999999987 777888888888899999887654
No 412
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=49.91 E-value=68 Score=22.04 Aligned_cols=61 Identities=7% Similarity=-0.074 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
..+..++.-++.=.|..++|.++++... -+..++. .-.-+++.|.++.+-++..++-++..
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~Fk-WG~~F~~------LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFK-WGHTFLE------LNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCC-CcHHHHH------HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3677888888999999999999999884 3322222 23459999999999888887766543
No 413
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.14 E-value=1.2e+02 Score=25.70 Aligned_cols=63 Identities=17% Similarity=0.046 Sum_probs=47.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCC-----NLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
+...|++..+-.||+..|+++++.+.-.. .+.+- ..+|..+.-+|...+++.+ |.++|.....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~D----Air~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYAD----AIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 56678888899999999999988764311 12222 4567778889999999999 9999987643
No 414
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=46.54 E-value=33 Score=17.16 Aligned_cols=24 Identities=4% Similarity=0.011 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 043380 108 DLQSLLEIVFEMKSCCNLILDRSTFTA 134 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ 134 (246)
.++.|..+|++... +.|+..+|-.
T Consensus 2 E~dRAR~IyeR~v~---~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL---VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH---hCCCchHHHH
Confidence 46889999999988 5688777654
No 415
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.62 E-value=1.3e+02 Score=22.62 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=63.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH-----HHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 043380 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT-----LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132 (246)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 132 (246)
-..+...+++++|+.-++..... |....+.. |-+.....|.+++|+.+++.... .+. .....
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w--~~~~~ 162 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----------TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESW--AAIVA 162 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccH--HHHHH
Confidence 34466789999999999887764 33334444 44456788999999999998877 333 22334
Q ss_pred HHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 133 ~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..--+.+...|+-++ |..-|+.-.+.
T Consensus 163 elrGDill~kg~k~~----Ar~ay~kAl~~ 188 (207)
T COG2976 163 ELRGDILLAKGDKQE----ARAAYEKALES 188 (207)
T ss_pred HHhhhHHHHcCchHH----HHHHHHHHHHc
Confidence 455678889999999 99999988876
No 416
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.44 E-value=1.3e+02 Score=22.51 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..+.++..|...|+++. |.++|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~r----A~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDR----AYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHH----HHHHHHHHHcC
Confidence 34555666666666666 66666665553
No 417
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.25 E-value=4.2e+02 Score=28.19 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 22 AVIEASREAQRIDEAYQILESVEK---GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
.+-.+-.+++.+.+|...+++-.. ...-...-|-.+...|+..+++|.+.-+...-.. .|+. ..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----------~~sl---~~ 1454 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----------DPSL---YQ 1454 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----------CccH---HH
Confidence 445567788899999999988321 1122334455666699999999999888775222 2432 23
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHH
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 177 (246)
.|.-....|++..|...|+++.. ..|+ ..+++.++..-...+.+.. +.-..+-.... ..+....++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~~~~l~t----~i~~~dg~~~~------~se~~~~~~ 1521 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLAIQHLST----EILHLDGLIIN------RSEEVDELN 1521 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhc---CCCccccchhhHHHhhhcccchhH----HHhhhcchhhc------cCHHHHHHH
Confidence 44445678999999999999987 5577 7788888887777788887 66555544442 233333332
Q ss_pred HH-HHHHHhcCChhHHhhHHH
Q 043380 178 SM-MHELAARVDYDIVKSPYR 197 (246)
Q Consensus 178 ~l-i~~~~~~g~~~~a~~~~~ 197 (246)
++ +.+-=+.+++|..+..+.
T Consensus 1522 s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1522 SLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhhhcchhhhhhhhh
Confidence 22 233346677777766655
No 418
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=44.14 E-value=1.6e+02 Score=24.27 Aligned_cols=56 Identities=13% Similarity=-0.060 Sum_probs=33.4
Q ss_pred chHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 043380 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132 (246)
Q Consensus 68 ~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 132 (246)
-+|..+++..... -+.|...=-.|+..|...|-...|..+|..+.- ..+.-|.-.|
T Consensus 200 ~~Ai~lLE~~l~~--------s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~i-K~IQ~DTL~h 255 (365)
T PF09797_consen 200 LQAIALLEHALKK--------SPHNYQLKLLLVRLYSLLGAGSLALEHYESLDI-KNIQLDTLGH 255 (365)
T ss_pred HHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcCh-HHHHHHHhHH
Confidence 3455555555543 234445555667777777777777777777655 4455554433
No 419
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.51 E-value=1.7e+02 Score=23.42 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=54.8
Q ss_pred HHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCC-CCCCchhhh
Q 043380 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST-GTISPEVQE 213 (246)
Q Consensus 135 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 213 (246)
=|.+++..++|.+ ++...-+--+. -..+.| .....-|-.|.+.+.+..+.++-..-..+.. ...+
T Consensus 89 GIQALAEmnrWre----VLsWvlqyYq~---pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp----- 154 (309)
T PF07163_consen 89 GIQALAEMNRWRE----VLSWVLQYYQV---PEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLP----- 154 (309)
T ss_pred hHHHHHHHhhHHH----HHHHHHHHhcC---cccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCch-----
Confidence 3789999999999 65443333222 113344 4445556668899999888888776543221 1121
Q ss_pred HHHHHHHHHHH-----hcCChhHHHHHH
Q 043380 214 EAGHLLMEAAL-----NDGQVDLALDKL 236 (246)
Q Consensus 214 ~~~~~li~~~~-----~~g~~~~a~~~~ 236 (246)
-|..+++.|. -.|.+++|+++.
T Consensus 155 -~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 155 -EYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred -hhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4666666554 479999999887
No 420
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=43.45 E-value=61 Score=20.57 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=32.5
Q ss_pred HHHHhcCChhHHhhHHHhhCC-CCCCCCCchhhhHHHHHHHHHHHhcCChhHHH
Q 043380 181 HELAARVDYDIVKSPYRRMWP-DSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233 (246)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 233 (246)
......|+.+.|..+++.+.. .+++ .|..++.++-..|...-|.
T Consensus 42 a~~~~~g~~~aa~~Ll~~L~~~r~~~---------wf~~Fl~AL~~~g~~~la~ 86 (88)
T cd08812 42 AEERNKGNIAAAEELLDRLERCDKPG---------WFQAFLDALRRTGNDDLAK 86 (88)
T ss_pred HHHhccChHHHHHHHHHHHHHhccCC---------cHHHHHHHHHHcCCccHHH
Confidence 333345899999999999985 4332 4778999999998866554
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.31 E-value=99 Score=20.67 Aligned_cols=78 Identities=17% Similarity=0.070 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHH
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 110 (246)
-..++|..|.+.+.+.-......--+-+..+.+.|++++| +..-.. ...||...|-+|-.. +.|-.+
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~---------~~~pdL~p~~AL~a~--klGL~~ 86 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLPQC---------HCYPDLEPWAALCAW--KLGLAS 86 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHHTT---------S--GGGHHHHHHHHH--HCT-HH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhccc---------CCCccHHHHHHHHHH--hhccHH
Confidence 3467888888887641122222223334456678888888 222222 346888887766544 778888
Q ss_pred HHHHHHHHHHh
Q 043380 111 SLLEIVFEMKS 121 (246)
Q Consensus 111 ~a~~~~~~m~~ 121 (246)
++..-+.++..
T Consensus 87 ~~e~~l~rla~ 97 (116)
T PF09477_consen 87 ALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHHh
Confidence 88888887766
No 422
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=42.35 E-value=1.5e+02 Score=24.17 Aligned_cols=41 Identities=7% Similarity=0.068 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 135 (246)
-.-.|++.|.++|.+++|.++....++-..-.|+......+
T Consensus 108 ElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 108 ELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred hhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 34578889999999999999888776633344664444433
No 423
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=42.14 E-value=2.1e+02 Score=25.18 Aligned_cols=88 Identities=7% Similarity=0.022 Sum_probs=53.4
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH-------------HHHhcCChhhhhhHHHHHH
Q 043380 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD-------------ALLYSGSIKVVGLYALCIF 156 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-------------~~~~~~~~~~~~~~a~~~~ 156 (246)
+.+...|...|.-|...++|++|.++.....+ ...|.++.. +|+..++.++ ..+.
T Consensus 570 pisV~py~~iL~e~~sssKWeqavRLCrfv~e-------qTMWAtlAa~Av~~~~m~~~EiAYaA~~~idK-----Vsyi 637 (737)
T KOG1524|consen 570 PISVNPYPEILHEYLSSSKWEQAVRLCRFVQE-------QTMWATLAAVAVRKHQMQISEIAYAAALQIDK-----VSYI 637 (737)
T ss_pred eeeccccHHHHHHHhccchHHHHHHHHHhccc-------hHHHHHHHHHHHhhccccHHHHHHHHhhchhh-----HHHH
Confidence 34566788899999999999999999776665 333444443 3444444444 3344
Q ss_pred HHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 157 ~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
++++.. |+..+- +.....-.|++.+|+-++..-
T Consensus 638 n~iK~l--------tske~~--mA~~~l~~G~~~eAe~iLl~~ 670 (737)
T KOG1524|consen 638 NHIKAL--------TSKEEQ--MAENSLMLGRMLEAETILLHG 670 (737)
T ss_pred HHHhcc--------CcHHHH--HHHHHHHhccchhhhHHHHhc
Confidence 444432 333332 333334567888888777653
No 424
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.58 E-value=78 Score=20.73 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..++..|...++.++|..-+.++.. . .-.......++..+...++... ..+..++..+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~-~--~~~~~vv~~~l~~~le~~~~~r--~~~~~Ll~~L~~~ 66 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKL-P--SQHHEVVKVILECALEEKKSYR--EYYSKLLSHLCKR 66 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT--G--GGHHHHHHHHHHHHHTSSHHHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC-C--ccHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHhc
Confidence 4566677778999999988888654 1 1113334444554444433222 2266677777665
No 425
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.34 E-value=2.8e+02 Score=25.36 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHH------HHHHHHHHHHhCCCCCCCH
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ------SLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~m~~~~~~~p~~ 129 (246)
+|+.+|..+|++-.+..+++.+.... .|-+.=...||..|+...+.|.++ .|.+.+++ .-+.-|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~-----~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~----a~ln~d~ 103 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN-----KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ----ARLNGDS 103 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-----cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH----hhcCCcc
Confidence 78889999999999999888887651 233444567888888888888763 23333333 3345577
Q ss_pred HHHHHHHHHHHh
Q 043380 130 STFTAMVDALLY 141 (246)
Q Consensus 130 ~~~~~li~~~~~ 141 (246)
.||..|+.+-..
T Consensus 104 ~t~all~~~sln 115 (1117)
T COG5108 104 LTYALLCQASLN 115 (1117)
T ss_pred hHHHHHHHhhcC
Confidence 778777766544
No 426
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.01 E-value=97 Score=20.86 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcc
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNG 81 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~ 81 (246)
++|+-+.++...++|+++++-|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 46677788999999999999999986
No 427
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=40.11 E-value=1.7e+02 Score=22.66 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC-----C-----CCC----------Cchh
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS-----T-----GTI----------SPEV 211 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~-----~~~----------~~~~ 211 (246)
|..+++.-.. -..+..+...+--++...|+...+.++++.+.... . ... .+..
T Consensus 118 A~~~L~~~~~-------~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~ 190 (246)
T PF07678_consen 118 ALNYLERHLD-------NIQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSL 190 (246)
T ss_dssp HHHHHHHHHG-------CTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHH
T ss_pred HHHHHHHhcc-------ccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchH
Confidence 6666655532 24566676667777777777777777777665110 0 000 1112
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 212 QEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..++=...+.++.+.++.+.+..+.+=+.++
T Consensus 191 ~vEtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 191 DVETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 2223333445666679999999988877664
No 428
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.61 E-value=1.3e+02 Score=21.04 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=42.6
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhc-CChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChh
Q 043380 118 EMKSCCNLILDRSTFTAMVDALLYS-GSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190 (246)
Q Consensus 118 ~m~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 190 (246)
.+++ .|++++..-.. ++..+... +..-. |.++++.+.+. +...+..|..-.+..+...|-+.
T Consensus 7 ~l~~-~glr~T~qR~~-Il~~l~~~~~~h~s----a~eI~~~l~~~-----~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKK-AGLKVTLPRLK-ILEVLQEPDNHHVS----AEDLYKRLIDM-----GEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHH-cCCCCCHHHHH-HHHHHHhCCCCCCC----HHHHHHHHHhh-----CCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455 77777754433 34444443 45677 99999999887 66667788888888888888654
No 429
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.40 E-value=60 Score=24.61 Aligned_cols=84 Identities=6% Similarity=-0.116 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
..+++=-|...+.++.|-.--.....+|.-++.-.|..++|..+++... .+.++.. .-.-|++.|.++++.++
T Consensus 126 h~RLLP~lVAANpVNYGrP~rLnCvEAlaA~l~I~G~~e~A~~lL~~F~-wG~~Fl~------lN~~lLd~Ya~C~~s~e 198 (263)
T KOG3154|consen 126 HERLLPYLVAANPVNYGRPWRLNCVEALAACLYICGFPEEARELLDKFK-WGHAFLE------LNKDLLDEYAKCASSAE 198 (263)
T ss_pred cccccchhhhcCccccCCCceecHHHHHHhHeeeecChhHHHHHHhcCc-chHHHHH------HhHHHHHHHHhhCCHHH
Confidence 3444444544433333322223445666667777899999999999884 3333332 23459999999999999
Q ss_pred HHHHHHHHHhh
Q 043380 232 ALDKLSNTITR 242 (246)
Q Consensus 232 a~~~~~~m~~~ 242 (246)
..++-++.+++
T Consensus 199 v~~~qn~~Le~ 209 (263)
T KOG3154|consen 199 VVEVQNEFLES 209 (263)
T ss_pred HHHHHHHHHHH
Confidence 98887776653
No 430
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=39.17 E-value=92 Score=19.11 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILISACIKTK 65 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~ 65 (246)
=+.+.|..++..++..-+.++..||++...+.+..
T Consensus 11 lDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 35677888888887666778888998877766543
No 431
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=38.91 E-value=1.3e+02 Score=22.36 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=50.7
Q ss_pred hhhHHHHhcc--cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 3 EENEIVNREH--WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
+.++.-+..| -.+.+.+...++.-|...|+.+..+++.-.+. |+.--.+.++..|-+.+-++.-.-++.+....
T Consensus 6 e~Lep~Il~~~i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD----~~~LDidq~i~lC~~~~LydalIYv~n~~l~D 81 (196)
T PF12816_consen 6 ECLEPFILSGKIKSLPPEVFKALVEHYASKGRLERLEQLILHLD----PSSLDIDQVIKLCKKHGLYDALIYVWNRALND 81 (196)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCC----HHhcCHHHHHHHHHHCCCCCeeeeeeeccccC
Confidence 3444444444 34566788999999999999888888887774 33333566778888888777666666665543
No 432
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=38.85 E-value=1e+02 Score=19.41 Aligned_cols=50 Identities=8% Similarity=-0.138 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHH
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 234 (246)
....+-......|+.+.|..+++.+. .+++ -|..++.++...|.-+-|..
T Consensus 34 d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~~~---------Wf~~Fl~AL~~~~~~~LA~~ 83 (84)
T cd08789 34 DKERIQAAENNSGNIKAAWTLLDTLV-RRDN---------WLEPFLDALRECGLGHLARL 83 (84)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-ccCC---------hHHHHHHHHHHcCCHHHHHh
Confidence 33445555556899999999999998 4322 47789999999998776653
No 433
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.81 E-value=2.8e+02 Score=24.51 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEP--DSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
..++.-|.+.+++++|..++..|.-...+ --.+.+.+.+.+.+..--++.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 46788999999999999999999622121 1233445555566665556667777777765
No 434
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.78 E-value=2.3e+02 Score=23.61 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=9.1
Q ss_pred HHHhcCChhHHhhHHHh
Q 043380 182 ELAARVDYDIVKSPYRR 198 (246)
Q Consensus 182 ~~~~~g~~~~a~~~~~~ 198 (246)
..+..|+.+-+..+++.
T Consensus 174 ~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 174 IAMAKGDIAICKMLLDS 190 (413)
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 34455666655555543
No 435
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=38.45 E-value=73 Score=19.26 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=30.1
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD 108 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 108 (246)
...++.+.+.+++++.... |..|.......+.-+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~-------g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQ-------GYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHC-------SSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHH
Confidence 4468899999999999987 678887777777777655543
No 436
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.32 E-value=19 Score=30.59 Aligned_cols=112 Identities=10% Similarity=0.027 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcc------CCCCCCCCCccHHHHHHHHHHH--
Q 043380 32 RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG------QKCSSGGFHPDIFTYATLLMGF-- 103 (246)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~p~~~~~~~ll~~~-- 103 (246)
.+++-.++++.+.+.-.+| ...+-|++|.+.+++++|..-+++-++.| +.....|+. +..-++...
T Consensus 69 ~~~e~i~lL~~l~~~g~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~----~~R~l~~~v~~ 142 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGGAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVK----GCRKVLEAVNL 142 (480)
T ss_pred cHHHHHHHHHHHHHccCCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHH----HHHHHHHhCCC
Confidence 3677777777777433455 34456889999999999999998877643 222222332 333344432
Q ss_pred ---HccCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 104 ---RHAKDLQSLLEIVFEMKSCCNLILD---RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 104 ---~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
.|.| ..++..+++.+.. .|+... ..+||. -|++.=-+++ ++..|+.
T Consensus 143 PvQvRHG-tpDarlL~e~~~a-~G~~a~EGG~ISYnl---PYsK~vpLe~----si~~Wqy 194 (480)
T TIGR01503 143 PLQIRHG-TPDARLLAEIILA-GGFTSFEGGGISYNI---PYAKNVTLEK----SLEDWQY 194 (480)
T ss_pred CeeccCC-CCcHHHHHHHHHH-cCCCccCCCcceecc---ccCCCCCHHH----HHHHHHH
Confidence 2333 3456777777777 776543 344442 3455555666 5555543
No 437
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=38.30 E-value=31 Score=20.36 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCH
Q 043380 106 AKDLQSLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~p~~ 129 (246)
.-|++.|...|.+++....++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 568999999999999834455544
No 438
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.91 E-value=64 Score=20.23 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=21.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 219 LMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 219 li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
+++.+.++.-.++|+++++-|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 6777788888899999998888877
No 439
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=37.65 E-value=1.8e+02 Score=21.96 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=49.2
Q ss_pred hhhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHhcCCcchHHHHHHHHHh
Q 043380 3 EENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS---ACIKTKKLDVTMPFNEQLKD 79 (246)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~---~~~~~~~~~~a~~~~~~m~~ 79 (246)
..+.++++..++-....|+..+-.+...+..++-.+.+-.-..++......+|..++ .-...+..+++.++|++-+-
T Consensus 16 ~~v~~~iK~~~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m~~~i~~~n~fl~~~~~~~~~~~~~~~~~YyKkhIy 95 (205)
T PF12238_consen 16 KKVLDLIKENPPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLMKHKISHMNAFLNDWPPHMLEEGREKMTKYYKKHIY 95 (205)
T ss_pred HHHHHHHccCCCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhccHHHHHHHHHHhcc
Confidence 355677777888888889888888888877777655442222223344455555555 11113455778888888765
Q ss_pred c
Q 043380 80 N 80 (246)
Q Consensus 80 ~ 80 (246)
.
T Consensus 96 ~ 96 (205)
T PF12238_consen 96 K 96 (205)
T ss_pred C
Confidence 4
No 440
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.56 E-value=1.4e+02 Score=26.52 Aligned_cols=77 Identities=12% Similarity=-0.041 Sum_probs=40.2
Q ss_pred HHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhh
Q 043380 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGL 150 (246)
Q Consensus 71 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~ 150 (246)
....+.+..+ -.-.+...-.-++..|.+.|-.+.|.++.+.+-. .- ....-|..-+..+.++|+...
T Consensus 390 ~~~i~~lL~~-------~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~-~~--~~~~~~g~AL~~~~ra~d~~~--- 456 (566)
T PF07575_consen 390 RERIEELLPR-------VPLDTNDDAEKLLEICAELGLEDVAREICKILGQ-RL--LKEGRYGEALSWFIRAGDYSL--- 456 (566)
T ss_dssp HHHHHHHGGG-----------SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHhh-------CCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HH--HHCCCHHHHHHHHHHCCCHHH---
Confidence 5566666654 2223555678888999999999999999988766 32 234557778888899999888
Q ss_pred HHHHHHHHHHH
Q 043380 151 YALCIFGEIVK 161 (246)
Q Consensus 151 ~a~~~~~~m~~ 161 (246)
+..+-+.+.+
T Consensus 457 -v~~i~~~ll~ 466 (566)
T PF07575_consen 457 -VTRIADRLLE 466 (566)
T ss_dssp -----------
T ss_pred -HHHHHHHHHH
Confidence 5444444443
No 441
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=37.51 E-value=1.9e+02 Score=22.32 Aligned_cols=168 Identities=15% Similarity=0.055 Sum_probs=85.4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH--HHccCCHHHHHHHHHHHHhCC
Q 043380 47 LEPD-SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG--FRHAKDLQSLLEIVFEMKSCC 123 (246)
Q Consensus 47 ~~~~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~ 123 (246)
+.|+ +..||.+---+...|++|.|.+.|+...+. .|.- -|..+-++ +---|+++-|.+=|...-...
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---------Dp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---------DPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---------CCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 3443 456777777777888888888888887765 3321 23333222 224577777776666555512
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 124 ~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
.-.|=...|--++. ..-++.+ |..-+.+-- ...|..-|...|-.|. .|++. .+.+++.+....
T Consensus 164 ~~DPfR~LWLYl~E---~k~dP~~----A~tnL~qR~--------~~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a 226 (297)
T COG4785 164 PNDPFRSLWLYLNE---QKLDPKQ----AKTNLKQRA--------EKSDKEQWGWNIVEFY-LGKIS-EETLMERLKADA 226 (297)
T ss_pred CCChHHHHHHHHHH---hhCCHHH----HHHHHHHHH--------HhccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhc
Confidence 11221222322222 2333444 443222211 1234444444433322 22221 122333332111
Q ss_pred C-CCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 204 T-GTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 204 ~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
. ...-..+-..||-.|.+-+...|++++|..+|+--..
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 0 0011222344788899999999999999999986554
No 442
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.43 E-value=1.4e+02 Score=20.58 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCChhhh---hhHHHHHHHHHHHhhcCCCCCCcchhhHHHHH----HHHHhcCChhHHhhHHHh
Q 043380 128 DRSTFTAMVDALLYSGSIKVV---GLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM----HELAARVDYDIVKSPYRR 198 (246)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~ 198 (246)
|...+..|-.++...|++++. .+.|+.+|+.--+. .+-....|...+ .++-..|+.++|..-|+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL------~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL------HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T------TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc------ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 345677888899999998882 23344555543322 122234555544 345667888888888774
No 443
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.34 E-value=1.9e+02 Score=22.22 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=63.2
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHH--HHHHHHHhcCCcchHHHHHHHHHhccCCCCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEP---DSLSYN--ILISACIKTKKLDVTMPFNEQLKDNGQKCSSG 87 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~t~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 87 (246)
+.++..-+|.|+--|.-...+.+|-+.|..- .++.| |..+++ .-|......|+.++|.+...++...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e-~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe------- 93 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE-SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE------- 93 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc-cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-------
Confidence 5556666777766666665555666666432 12333 444443 4667778899999999999888765
Q ss_pred CCCccHHHHHHHHHH----HHccCCHHHHHHHHHHHHh
Q 043380 88 GFHPDIFTYATLLMG----FRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~~ 121 (246)
-+.-|...+-.|... ..+.|..++|+++.+.=..
T Consensus 94 iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 94 ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 444554333333322 4677888888888776444
No 444
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.31 E-value=1.8e+02 Score=21.84 Aligned_cols=101 Identities=18% Similarity=0.036 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHH-HHHhcCC--hhHHhhHHHhhCCCCCCCCC
Q 043380 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH-ELAARVD--YDIVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~-~~~~~g~--~~~a~~~~~~~~~~~~~~~~ 208 (246)
++...-.....|++++ |.+-++.+.+.-. .++--...|..+.. +++..+. +.+|..++..+..... .+
T Consensus 32 ~s~~aI~~~H~~~~ee----A~~~l~~a~~~v~---~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~--ps 102 (204)
T COG2178 32 LSGEAIFLLHRGDFEE----AEKKLKKASEAVE---KLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL--PS 102 (204)
T ss_pred HHHHHHHHHHhccHHH----HHHHHHHHHHHHH---HHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC--CC
Confidence 5555555666777777 6666665544310 01111223444444 4444443 4456666665543221 11
Q ss_pred ch---hhhHHHHH-----------HHHHHHhcCChhHHHHHHHHHHh
Q 043380 209 PE---VQEEAGHL-----------LMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 209 ~~---~~~~~~~~-----------li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
|. +....|-. .+--..+.|+++.|.+.++-|.+
T Consensus 103 ~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 103 PEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 00001111 11123468899999999887754
No 445
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.95 E-value=1e+02 Score=27.34 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 20 MNAVIEASREAQRIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
|..-+..+..+++.. ....+.+..+++ .+...-.-++..|.+.|-.+.|.++.+.+-.. .....-|..
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~---------~~~~~~~g~ 443 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR---------LLKEGRYGE 443 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------HHHCCCHHH
Confidence 444444444433222 444444332222 34455666777777777777777777766554 223456777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
.+..+.++|+...+..+-+.+.+
T Consensus 444 AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 444 ALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHH-----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777776666555554
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.80 E-value=1.9e+02 Score=22.09 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=62.4
Q ss_pred HHHHHHHHHhc--CCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH
Q 043380 54 YNILISACIKT--KKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131 (246)
Q Consensus 54 ~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 131 (246)
|...+.++... +++++|.+.+..- .+.|+-. .-++.++.+.|+.+.|+.++..+.. .. .+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p----------s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p-~l--~s~~~ 143 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP----------SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP-PL--SSPEA 143 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC----------CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC-CC--CCHHH
Confidence 55677776654 4555665555221 2223322 2477778888999999999998766 22 23333
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc
Q 043380 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~ 186 (246)
-..++.. ..++.+.+ |+.+-+...+. .+ ...+..++..+...
T Consensus 144 ~~~~~~~-La~~~v~E----Af~~~R~~~~~------~~--~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 144 LTLYFVA-LANGLVTE----AFSFQRSYPDE------LR--RRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHHH-HHcCCHHH----HHHHHHhCchh------hh--HHHHHHHHHHHHHH
Confidence 4444444 66788888 88776665443 11 34566666665543
No 447
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.70 E-value=2.2e+02 Score=22.76 Aligned_cols=185 Identities=8% Similarity=0.035 Sum_probs=105.7
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCcchHHHHHHHHHhccCCCCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 043380 46 GLEPDSLSYNILISAC-IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD--IFTYATLLMGFRHAKDLQSLLEIVFEMKSC 122 (246)
Q Consensus 46 ~~~~~~~t~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 122 (246)
+-.||+..=|-.-++- .+...+++|+.-|.+..+.. |-+-+ -...--++..+.+.+++++.+..|.++...
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelE------gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELE------GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcc------cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4567766544332221 23446788888888888751 22211 124456778888999999988888877541
Q ss_pred --CCCC--CCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHh
Q 043380 123 --CNLI--LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRR 198 (246)
Q Consensus 123 --~~~~--p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (246)
..+. -+..+.|++++-.+.+.+.+. ....++.-...-..-.+-+.--.|-+.|-..|...|.+.+..+++.+
T Consensus 95 IkSAVTrNySEKsIN~IlDyiStS~~m~L----LQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq 170 (440)
T KOG1464|consen 95 IKSAVTRNYSEKSINSILDYISTSKNMDL----LQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ 170 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH
Confidence 1122 235677888887777777776 55555543332100001112223445677777777888777777776
Q ss_pred hCCCC---CCCCCc---hhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 199 MWPDS---TGTISP---EVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 199 ~~~~~---~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
+...- .|.-.. ..-...|..=|..|..+.+-.+...++++-.
T Consensus 171 Lh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 171 LHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred HHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 65110 010000 0011257777777777777777777776543
No 448
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.46 E-value=2.5e+02 Score=23.23 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHH
Q 043380 33 IDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSL 112 (246)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 112 (246)
+.+|+++|++.. +.-..+|+ ++.....--...+.+..+ ....-...-..|..+..+.|+..+|
T Consensus 232 i~~AE~l~k~AL---ka~e~~yr-------~sqq~qh~~~~~da~~rR-------Dtnvl~YIKRRLAMCARklGrlrEA 294 (556)
T KOG3807|consen 232 IVDAERLFKQAL---KAGETIYR-------QSQQCQHQSPQHEAQLRR-------DTNVLVYIKRRLAMCARKLGRLREA 294 (556)
T ss_pred HHHHHHHHHHHH---HHHHHHHh-------hHHHHhhhccchhhhhhc-------ccchhhHHHHHHHHHHHHhhhHHHH
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhHHHHH
Q 043380 113 LEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLYVSMM 180 (246)
Q Consensus 113 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~li 180 (246)
.+.|+.+.++..+..-......||.++....-+.+ +..++-..-+. ...-+. ..|++-+
T Consensus 295 ~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD----vqavLakYDdi-----slPkSA~icYTaAL 354 (556)
T KOG3807|consen 295 VKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD----VQAVLAKYDDI-----SLPKSAAICYTAAL 354 (556)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccc-----cCcchHHHHHHHHH
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.29 E-value=3.8e+02 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEK 45 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 45 (246)
-|..|+..|...|..++|++++.+.-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477888888888888888888887764
No 450
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.25 E-value=1.2e+02 Score=19.38 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+...|..-++.-..... +++ ++|+-... .|+..|...|-.++.....+=-++. ..++++.|...
T Consensus 9 ~~~~~k~~~~rk~~Ls~-eE~-EL~ELa~~-AGv~~dp~VFriildLL~~nVsP~A----I~qmLK~m~s~ 72 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSA-EEV-ELYELAQL-AGVPMDPEVFRIILDLLRLNVSPDA----IFQMLKSMCSG 72 (88)
T ss_pred hHHHHHHHHHHHhccCH-HHH-HHHHHHHH-hCCCcChHHHHHHHHHHHcCCCHHH----HHHHHHHHHcc
Confidence 44555555544333332 222 78888888 9999999999999998888888888 88888888765
No 451
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.20 E-value=1.5e+02 Score=20.81 Aligned_cols=68 Identities=9% Similarity=0.024 Sum_probs=47.5
Q ss_pred CccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 90 HPDIFTYATLLMGFRHAKD---LQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.++..+--.+-.++.+..+ ..+...+++.+.+ ..-+.. .....-|.-++.+.++++. +.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~----s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSK----SLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHH----HHHHHHHHHhh
Confidence 4666666666667766655 4566778888876 322222 3334457778999999999 99999999886
No 452
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=35.85 E-value=2.3e+02 Score=22.76 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
..+|..+...+.+.|.++. |...+..+....... -..++.....-.+.+-..|+..+|...++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~----A~~~l~~~~~~~~~~--~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQL----ALSALNRLFQLNPSS--ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHH----HHHHHHHHhccCCcc--cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677888888888899888 888888877641000 011333444445555667777887777766554
No 453
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.85 E-value=93 Score=18.21 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=31.5
Q ss_pred HHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH-----HccCCHHHHHHHH
Q 043380 61 CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF-----RHAKDLQSLLEIV 116 (246)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~ 116 (246)
+.+.|++=+|-++++++=.. .-.|....+..||... .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~-------~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKA-------APGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCC-------T-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHH-------CCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 35577888888888887653 2234555667776664 4678888877664
No 454
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.20 E-value=78 Score=27.12 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=71.0
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHH-HHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYA-TLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMV 136 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 136 (246)
+.+...+.++.|..++.+.++. .||-..|- .=-.++.+.+++..|+.=.....+ ..|+ ...|--=.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l---------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL---------DPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRG 79 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc---------CCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeecc
Confidence 4456677899999999999985 77655443 333778899999888877666666 3344 22333333
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCC
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 188 (246)
.++.+.+.+.+ |...|+.... +.|+..-...++.-|-....
T Consensus 80 ~a~m~l~~~~~----A~~~l~~~~~-------l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 80 TAVMALGEFKK----ALLDLEKVKK-------LAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHHhHHHHHH----HHHHHHHhhh-------cCcCcHHHHHHHHHHHHHHH
Confidence 44445556666 7777766654 57888888888877665543
No 455
>PTZ00131 glycophorin-binding protein; Provisional
Probab=35.18 E-value=2.1e+02 Score=22.18 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=135.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH-
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLS----YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT- 95 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~- 95 (246)
..+|.+|+..-.+.+-+.+|-++.....|+..| =..+|.+|+.--.+.+-..+|-++... ..|+..|
T Consensus 166 gqimka~aadpeyrkhl~i~y~ilt~tdpnd~tsadpegqimka~aadpeyrkh~~v~~~ilt~--------tdpndets 237 (413)
T PTZ00131 166 GQIMKAWAADPEYRKHLEIFYKILTHTDPNDDTSADPEGQIMKAWAADPEYRKHLEVFHKILTH--------TDPNDETS 237 (413)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHccCCCCCcccCCcchHHHHHHhcCHHHHHHHHHHHHHHcc--------CCCCcccc
Confidence 457888888888888888887776444555443 467899999888888889999998875 3444332
Q ss_pred ---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 96 ---YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST----FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 96 ---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~----~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
=..++.+|+..-.+.+-..+|-++.. . -.|+..| =..++.+|+....+.. -+.+|-++...
T Consensus 238 adpegqimka~aadpey~kh~~i~y~ilt-h-tdpndetsadpegqimka~aadpey~k----h~~i~y~iltn------ 305 (413)
T PTZ00131 238 ADPEGQIMKAWAADPEYLKHLEIFYKILT-H-TDPNDETSADPEGQIMKAWAADPEYLK----HLEIFYKILTN------ 305 (413)
T ss_pred CCcchHHHHHHhcCHHHHHHHHHHHHHHc-c-CCCcccccCCcchHHHHHHhcCHHHHH----HHHHHHHHHcC------
Confidence 34678899888888888888888776 3 2333222 3568899998888888 78888777653
Q ss_pred CCcchh----------------hHHHHHHHHHhcCChhHHhhHHHhhCCCC----------------CCCCCchhhhHHH
Q 043380 169 LWPKPH----------------LYVSMMHELAARVDYDIVKSPYRRMWPDS----------------TGTISPEVQEEAG 216 (246)
Q Consensus 169 ~~p~~~----------------~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~~~ 216 (246)
..|+.. --.-++.+|+.-..+.+-..+|-++...- ..+..| -
T Consensus 306 tdpnde~errnadnkedltsadpegqimka~aadpeyrkh~~i~y~ilt~tdpnd~~errnadnkedltsadp------e 379 (413)
T PTZ00131 306 TDPNDEVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLEIFYKILTHTDPNDDVERRNADNKEDLTSADP------E 379 (413)
T ss_pred CCCchHhhhcccccccccccCCcchHHHHHHhcChHHHHHHHHHHHHHccCCCchhhhhhccccccccccCCc------c
Confidence 333322 12457888888888877777777665211 011122 2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 217 HLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 217 ~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..++.+|..--.+.+-..+|..++..
T Consensus 380 gqimka~aadpeyrkh~~v~~~iltn 405 (413)
T PTZ00131 380 GQIMKAWAADPEYRKHLEVFHKILTN 405 (413)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHcC
Confidence 44888998888888888888877643
No 456
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.18 E-value=1.5e+02 Score=20.26 Aligned_cols=43 Identities=19% Similarity=0.031 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 111 SLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 111 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
.+.++|..|.. .|+--. +..|......+...|++++ |.++|+.
T Consensus 81 ~~~~if~~l~~-~~IG~~~A~fY~~wA~~le~~~~~~~----A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYS-KGIGTKLALFYEEWAEFLEKRGNFKK----ADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHH-HTTSTTBHHHHHHHHHHHHHTT-HHH----HHHHHHH
T ss_pred CHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHcCCHHH----HHHHHHh
Confidence 89999999999 888766 7778899999999999999 9999875
No 457
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.15 E-value=2.1e+02 Score=22.02 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=65.4
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---CHHHHH--HHHHHHHhcCChhhhhhHHHHHHHHHHHhh
Q 043380 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL---DRSTFT--AMVDALLYSGSIKVVGLYALCIFGEIVKRV 163 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~~~--~li~~~~~~~~~~~~~~~a~~~~~~m~~~~ 163 (246)
+.++..-+|.|+--|.-...+.+|-+.|.. + .|+.| |..+++ .-|+.....|+++. |.+...++...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e-~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~----Aie~in~l~Pe- 93 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--E-SGIKPPSIDLDSMDERLQIRRAIEEGQIEE----AIEKVNQLNPE- 93 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--c-cCCCCccCchhhHhHHHHHHHHHHhccHHH----HHHHHHHhChH-
Confidence 467777777777777666666666666654 3 55655 445554 56778899999999 99999888665
Q ss_pred cCCCCCCcchhhHHHHHH----HHHhcCChhHHhhHHHhh
Q 043380 164 CSNPGLWPKPHLYVSMMH----ELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 164 ~~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~~ 199 (246)
-+.-|...+-.|.. -..+.|..++|.++++.=
T Consensus 94 ----iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 94 ----ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred ----HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445433333322 246777888888877753
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.07 E-value=2.4e+02 Score=22.78 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCCHHHH-HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILDRSTF-TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~-~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
...+-.+..-|++.+|.+.+.+...+..++ .|.+.|.... .-|...|....-+++ -++..+.|.++ |
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e----~lE~~~~~iEk-----G 185 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEE----SLEVADDIIEK-----G 185 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHH----HHHHHHHHHHh-----C
Confidence 345666666777777777776665554441 3444443222 122223444444555 66777777776 3
Q ss_pred CCcch----hhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 169 LWPKP----HLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 169 ~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
..-+. .+|..+... ...++.+|-.++....+
T Consensus 186 gDWeRrNRyK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 186 GDWERRNRYKVYKGIFKM--MRRNFKEAAILLSDILP 220 (412)
T ss_pred CCHHhhhhHHHHHHHHHH--HHHhhHHHHHHHHHHhc
Confidence 32222 344443322 23456666666666543
No 459
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.35 E-value=4.1e+02 Score=25.20 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCH--HHHHHHHHHHHhCCCCCCCHH
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL--QSLLEIVFEMKSCCNLILDRS 130 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~p~~~ 130 (246)
-|..|+..|...|+.++|++++.+....-- ......++ -+--++.-+.+.+.. +-++++-+...+ ..-.-...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~--~~d~~~~~--~~e~ii~YL~~l~~~~~~Li~~y~~wvl~-~~p~~gi~ 580 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS--DTDSFQLD--GLEKIIEYLKKLGAENLDLILEYADWVLN-KNPEAGIQ 580 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc--ccccchhh--hHHHHHHHHHHhcccchhHHHHHhhhhhc-cCchhhee
Confidence 388999999999999999999999987310 00011111 222244444444443 444444444333 11000000
Q ss_pred HHH------------HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcC
Q 043380 131 TFT------------AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187 (246)
Q Consensus 131 ~~~------------~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g 187 (246)
.+. .-+-.|......+. +..+++.+... .-.++..-.+.++..|++.=
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l----~I~YLE~li~~-----~~~~~~~lht~ll~ly~e~v 640 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKL----LIPYLEHLISD-----NRLTSTLLHTVLLKLYLEKV 640 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcch----hHHHHHHHhHh-----ccccchHHHHHHHHHHHHHH
Confidence 011 12445666777788 99999999887 45567777788888777643
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.35 E-value=1.8e+02 Score=21.04 Aligned_cols=58 Identities=5% Similarity=-0.109 Sum_probs=39.2
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHH
Q 043380 45 KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 45 ~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 110 (246)
.|.+++..-. .++..+....+.-.|.++++.+.+. +..++..|...-|..+...|-+.
T Consensus 20 ~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-------~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 20 RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-------EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-------CCCCCcchHHHHHHHHHHCCCEE
Confidence 4555554433 5555555666777899999999887 56667777666777777777553
No 461
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=34.21 E-value=2.5e+02 Score=27.74 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=25.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 147 (246)
...++.-|.-..+---|+..+.+..- -.||..|-..||.-=...++|..
T Consensus 68 ~~~~~~e~~l~~~eg~~lm~laeall---r~pd~~t~d~li~dk~~~~~w~~ 116 (1208)
T PRK11905 68 VEALLQEYSLSSQEGVALMCLAEALL---RIPDTATRDALIRDKIAPGDWKS 116 (1208)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhh---cCCChHHHHHHHHHHhccCChhh
Confidence 44555555544444444444444333 23666666666665555555554
No 462
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=34.10 E-value=2.2e+02 Score=27.61 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=38.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
....++.-|.-..+---|+..+.+..- -.||..|-..||.-=...++|.. ++.+. +.+-.|..
T Consensus 66 ~~~~~~~e~~l~~~eg~~lm~laeall---r~pd~~t~d~li~dk~~~~~w~~----------h~~~~----~~~~vna~ 128 (1038)
T PRK11904 66 GIDAFLQEYSLSTEEGIALMCLAEALL---RIPDAATADALIRDKLSGADWKK----------HLGRS----DSLFVNAS 128 (1038)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhh---cCCCHHHHHHHHHHhcccCChhh----------hcCCC----ccceeeHH
Confidence 445555555555544445555544433 23677777777766666666655 33222 23445566
Q ss_pred hHHHHHHH
Q 043380 175 LYVSMMHE 182 (246)
Q Consensus 175 ~~~~li~~ 182 (246)
||..++.+
T Consensus 129 ~w~l~~~~ 136 (1038)
T PRK11904 129 TWGLMLTG 136 (1038)
T ss_pred HHHHHHhh
Confidence 66666654
No 463
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.84 E-value=4e+02 Score=24.97 Aligned_cols=89 Identities=11% Similarity=0.012 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCch--------hhhHHHH
Q 043380 146 KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE--------VQEEAGH 217 (246)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~ 217 (246)
++ ..+.++.+... .++..+......+... ..|++..|..++++......+.+... .+.....
T Consensus 181 ee----Iv~~L~~Il~~----EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~ 250 (830)
T PRK07003 181 GH----IVSHLERILGE----ERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMV 250 (830)
T ss_pred HH----HHHHHHHHHHH----cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhccC
Q 043380 218 LLMEAALNDGQVDLALDKLSNTITRWKG 245 (246)
Q Consensus 218 ~li~~~~~~g~~~~a~~~~~~m~~~g~~ 245 (246)
.+++++.. |+..+++.+++++..+|..
T Consensus 251 ~ll~aL~~-~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 251 RLLDALAA-GDGPEILAVADEMALRSLS 277 (830)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCC
No 464
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=33.53 E-value=4.2e+02 Score=25.03 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=110.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-----CH---HHHHHHHHHH-HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 28 REAQRIDEAYQILESVEKGLEP-----DS---LSYNILISAC-IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 28 ~~~g~~~~a~~~~~~~~~~~~~-----~~---~t~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
....++++|..++.++.+-.++ .. ..|+.+=.-. ...|+++++.++-+..... ....-..+....+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~---L~~~~~~~r~~~~sv 502 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ---LPEAAYRSRIVALSV 502 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cccccchhhhhhhhh
Confidence 3568899999999887532222 11 2344432222 2467889999888877764 111123345567777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH---HHHH--HHHHHhcCC--hhhhhhHHHHHHHHHHHhhc-CCCCCC
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST---FTAM--VDALLYSGS--IKVVGLYALCIFGEIVKRVC-SNPGLW 170 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~l--i~~~~~~~~--~~~~~~~a~~~~~~m~~~~~-~~~~~~ 170 (246)
+..+..-.|++++|..+..+..+ ..-.-+... |..+ ...+-..|. ..+ .+..|......-. ..+--.
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~----~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAE----QEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHhhhcccch
Confidence 88888889999999999877666 211223222 3322 234455663 222 3334444333200 001112
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCC-CCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDST-GTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
+-..++..+..++.+ .+.+..=...-..-+. ....+-.....+..|++.....|++++|...++++..-
T Consensus 578 f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 578 FLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 233556666666666 3333222221111110 11122222123447888999999999999999988654
No 465
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.19 E-value=2.9e+02 Score=23.05 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=12.4
Q ss_pred HHHHHHHhcCChhHHhhHHHh
Q 043380 178 SMMHELAARVDYDIVKSPYRR 198 (246)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~ 198 (246)
+.+...+..|+.+-+.-+++.
T Consensus 204 t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 204 AALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred hHHHHHHHcCCHHHHHHHHHC
Confidence 455545566777666655553
No 466
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=32.03 E-value=2.3e+02 Score=22.24 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=44.6
Q ss_pred HHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 138 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
.|....++.. .-.++..|..+- --.|+.....+.|++|.+..+-..|...+....++.
T Consensus 205 iCqt~eRF~a----v~~~L~kmv~~l----~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~ 262 (293)
T KOG3036|consen 205 ICQTAERFSA----VALVLGKMVFQL----VSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQ 262 (293)
T ss_pred HHHhHHHHHH----HHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcch
Confidence 4444555666 667777776651 235899999999999999999999999999887664
No 467
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.24 E-value=1.8e+02 Score=20.06 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH-HHHHHHHHHHccCCHHHHHHHHHHH
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF-TYATLLMGFRHAKDLQSLLEIVFEM 119 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m 119 (246)
..+-.++..++.-.|..++|.++++...=. ++-. .=.-++..|+++.+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG----------~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWG----------HTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 445567788888889889998888776421 2222 2235888899888888877765543
No 468
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=31.06 E-value=4e+02 Score=24.04 Aligned_cols=88 Identities=14% Similarity=-0.010 Sum_probs=41.5
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 138 (246)
..+.-.|.++.|.+++-+-. ....+.+++.+.+.-|.--.-.+... ..+.....-.|...-+..||..
T Consensus 266 ~~LlLtgqFE~AI~~L~~~~---------~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRNE---------FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT-----------T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhhc---------cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 34455677888888777621 45677777777777664322222111 2222201111122557788888
Q ss_pred HHhc---CChhhhhhHHHHHHHHHHHh
Q 043380 139 LLYS---GSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 139 ~~~~---~~~~~~~~~a~~~~~~m~~~ 162 (246)
|.+. .++.+ |.++|--+...
T Consensus 334 Y~~~F~~td~~~----Al~Y~~li~~~ 356 (613)
T PF04097_consen 334 YTRSFEITDPRE----ALQYLYLICLF 356 (613)
T ss_dssp HHHTTTTT-HHH----HHHHHHGGGGS
T ss_pred HHHHHhccCHHH----HHHHHHHHHHc
Confidence 8873 45555 88888776553
No 469
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=2.5e+02 Score=25.97 Aligned_cols=126 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHH
Q 043380 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181 (246)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~ 181 (246)
++.--|+-++|..+.++|..+..-..-..-.-++..+|+..|+-.. ..+++.-.... ..-|..-+..+.-
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnka----ir~lLh~aVsD------~nDDVrRaAVial 579 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKA----IRRLLHVAVSD------VNDDVRRAAVIAL 579 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhh----HHHhhcccccc------cchHHHHHHHHHh
Q ss_pred HHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 182 ELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 182 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
++.-..+++....+..-+.+...+++..- +--+|--+|...| ..+|..+++-|...
T Consensus 580 GFVl~~dp~~~~s~V~lLses~N~HVRyG----aA~ALGIaCAGtG-~~eAi~lLepl~~D 635 (929)
T KOG2062|consen 580 GFVLFRDPEQLPSTVSLLSESYNPHVRYG----AAMALGIACAGTG-LKEAINLLEPLTSD 635 (929)
T ss_pred eeeEecChhhchHHHHHHhhhcChhhhhh----HHHHHhhhhcCCC-cHHHHHHHhhhhcC
No 470
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=4.3e+02 Score=24.14 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHH
Q 043380 27 SREAQRIDEAYQILESVEKGLEPDSLS------YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLL 100 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~~~~~~~~~t------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll 100 (246)
..+..++..+.+.|..-.+-++.|... ...|--+|.+..++|.|.+++.+..+. -+.+..+---+.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------DRQSPLCQLLML 435 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------ccccHHHHHHHH
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 043380 101 MGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~ 121 (246)
.+....|..++|+......+.
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHh
No 471
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.26 E-value=99 Score=20.01 Aligned_cols=30 Identities=17% Similarity=-0.025 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 215 AGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 215 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
|+..|+.++...|.-..|.++-+.+..+|+
T Consensus 66 t~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 66 SVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 678888888888888888888877777764
No 472
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=30.23 E-value=1.3e+02 Score=25.55 Aligned_cols=159 Identities=11% Similarity=0.079 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC---ccHHHHHHHHHHH----
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH---PDIFTYATLLMGF---- 103 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---p~~~~~~~ll~~~---- 103 (246)
+.+++-.++++.+.+.-.+|.. ..-++.|.+.++++.|.+...+-.+.|... -.|++ .....+-.|+.+.
T Consensus 25 ~~~~e~~~~l~~l~~~g~~dvl--~ltiDsytr~~~~~~a~~~l~~~~~~~~~~-lnG~P~v~~g~~~~R~l~~~~~~Pl 101 (428)
T cd00245 25 PLLEEHIELLRTLQEEGAADVL--PLTIDSYTRVNDYEEAEEGLEESIKAGKSL-LNGFPIVNHGVKTCRKLLEGVDFPV 101 (428)
T ss_pred CCHHHHHHHHHHHHhcCCCCee--ccccccchhhhhhHHHHHHHHhhhhcCccc-cCCCCcccccHHHHHHHHHhCCCCE
Confidence 4567778888888743245543 345788999999999999888875432111 11222 1222444444442
Q ss_pred -HccCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChhhhhhHHHHHH---HHHHHhhcCCCCCCcchhhH
Q 043380 104 -RHAKDLQSLLEIVFEMKSCCNLILD---RSTFTAMVDALLYSGSIKVVGLYALCIF---GEIVKRVCSNPGLWPKPHLY 176 (246)
Q Consensus 104 -~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~~~~~a~~~~---~~m~~~~~~~~~~~p~~~~~ 176 (246)
.|+| ..++..+++.+.. .|+... ..+|+. -|.+.-.+++ +++-| +++..-+. ..|+.++..++
T Consensus 102 qvRhG-t~d~~~l~e~~~a-~g~~a~egg~isy~~---py~k~~~Le~----si~~wqy~~rl~~~y~-e~gv~in~E~f 171 (428)
T cd00245 102 QVRHG-TPDARLLAEIAIA-SGFDATEGGPISYNL---PYSKNVPLEK----SIENWQYCDRLVGFYE-ENGVPINREPF 171 (428)
T ss_pred eeccC-CccHHHHHHHHHH-hCcccccccceeecc---ccCCCCCHHH----HHHHHHHHHHHHHHHH-hcCceecccCC
Confidence 3343 3456777777777 665433 234432 2344445666 65555 33322211 12555555555
Q ss_pred HHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 177 VSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
..+...++ -.-+..|..+++.+...+
T Consensus 172 g~l~~~l~-pptla~aiaylea~la~g 197 (428)
T cd00245 172 GPLTGTLV-PPSILIAIQILEALLAAE 197 (428)
T ss_pred cCcccCcC-CcHHHHHHHHHHHHHHcc
Confidence 44332211 222344555555544433
No 473
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=29.55 E-value=3.2e+02 Score=22.51 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 22 AVIEASREAQRI---DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 22 ~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
.++..+.+.++. -+|.-+++.....-+.|...--.+++.|...|-.+.|.+.|..+.-. .++-|+..|..
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK-------~IQ~DTL~h~~ 257 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIK-------NIQLDTLGHLI 257 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChH-------HHHHHHhHHHH
Confidence 444444455554 45666667665444666667778899999999999999999998765 56777665544
Q ss_pred H
Q 043380 99 L 99 (246)
Q Consensus 99 l 99 (246)
+
T Consensus 258 ~ 258 (365)
T PF09797_consen 258 L 258 (365)
T ss_pred H
Confidence 3
No 474
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=29.44 E-value=3.2e+02 Score=22.38 Aligned_cols=26 Identities=12% Similarity=0.424 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHh
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKD 79 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~ 79 (246)
.-.+|+.|.+.|.+++|.++......
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHH
Confidence 34556666666666666666555543
No 475
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.19 E-value=3.1e+02 Score=22.21 Aligned_cols=138 Identities=11% Similarity=-0.023 Sum_probs=90.0
Q ss_pred CcCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcc
Q 043380 14 KLNTIVMNAVIEASREA------------QRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNG 81 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 81 (246)
+-|+.+|-.++..=-.. .-.+.-+.++++..+..+.+...+-.+|..+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~- 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK- 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-
Confidence 45677777777543322 11456677787755334567778888999999999999999999999986
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhC-----CCC------CCC-----HHHHHHHHHHHHhc
Q 043380 82 QKCSSGGFHPDIFTYATLLMGFRH---AKDLQSLLEIVFEMKSC-----CNL------ILD-----RSTFTAMVDALLYS 142 (246)
Q Consensus 82 ~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~-----~~~------~p~-----~~~~~~li~~~~~~ 142 (246)
.+-+...|...|..... .-.++.+..+|.+.... .+. .++ ...+.-+...+..+
T Consensus 95 -------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a 167 (321)
T PF08424_consen 95 -------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA 167 (321)
T ss_pred -------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 22356677777777644 33566666666544331 111 011 12333444455668
Q ss_pred CChhhhhhHHHHHHHHHHHhh
Q 043380 143 GSIKVVGLYALCIFGEIVKRV 163 (246)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~ 163 (246)
|-.+. |..+|+.+.+-+
T Consensus 168 G~~E~----Ava~~Qa~lE~n 184 (321)
T PF08424_consen 168 GYTER----AVALWQALLEFN 184 (321)
T ss_pred CchHH----HHHHHHHHHHHH
Confidence 99999 999999999873
No 476
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=28.98 E-value=4.3e+02 Score=23.74 Aligned_cols=185 Identities=15% Similarity=0.095 Sum_probs=0.0
Q ss_pred hhhhHHHHhcc---cCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhcCCcchHH
Q 043380 2 FEENEIVNREH---WKLNTIVMNAVIEASR-EAQRIDEAYQILESVEKGLEPDSLS------YNILISACIKTKKLDVTM 71 (246)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~t------~~~li~~~~~~~~~~~a~ 71 (246)
.+.++.+.+.. +.....++--+...+. ...++++|+..+++...-...+..+ -..++..+.+.+... |.
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~ 119 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-AL 119 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HH
Q ss_pred HHHHHHHhccCCCCCCCCCccHHHHHHH-HHHHHccCCHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHh--cCChh
Q 043380 72 PFNEQLKDNGQKCSSGGFHPDIFTYATL-LMGFRHAKDLQSLLEIVFEMKSCCN--LILDRSTFTAMVDALLY--SGSIK 146 (246)
Q Consensus 72 ~~~~~m~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~--~~~~~ 146 (246)
...++.++. ....+..+-...|.-+ +..+...+|...|.+.++.+..... ..|-..++-.++.+... .+..+
T Consensus 120 ~~l~~~I~~---~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 120 KNLDKAIED---SETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHH---HhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCCc---------chhhHHHHHHHHHh--cCChhHHhhHHHhh
Q 043380 147 VVGLYALCIFGEIVKRVCSNPGLWP---------KPHLYVSMMHELAA--RVDYDIVKSPYRRM 199 (246)
Q Consensus 147 ~~~~~a~~~~~~m~~~~~~~~~~~p---------~~~~~~~li~~~~~--~g~~~~a~~~~~~~ 199 (246)
+ +.+..++.... ...+ -..+|..+++.++. .|+++.+...++++
T Consensus 197 d----~~~~l~~~~~~-----~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 D----VLELLQRAIAQ-----ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred h----HHHHHHHHHHH-----HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
No 477
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=28.79 E-value=1.7e+02 Score=20.67 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
|...++.+ -+.|-..+...++++|++. |+..+...|+..+.-.
T Consensus 112 tlGvL~~a-k~kgLisk~Kpild~LI~~-------GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLALA-KSKGLISKDKPILDELIEK-------GFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHHHH-HHcCcccchHHHHHHHHHh-------cCcccHHHHHHHHHHh
Confidence 44444444 4567889999999999998 8999999998877643
No 478
>PRK09687 putative lyase; Provisional
Probab=27.97 E-value=3.1e+02 Score=21.77 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+|..+-...+.++++.|+..-...+.+.+. ++. .....+.++...|.. +|...+..+.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~----------~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT----------VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc----------hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 466667777778888877554444444443 221 123577788888875 67777777765
No 479
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.89 E-value=1.9e+02 Score=24.65 Aligned_cols=64 Identities=13% Similarity=-0.089 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
.+.-.|++.+.-.||.+...+.++.+.+.-.+.++...- | ..+--+|.--|++.+|.+.|-.+.
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~V--T-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRV--T-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeE--e-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888999888888888877655555544332 3 346667888899999999987764
No 480
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=27.88 E-value=2.6e+02 Score=26.78 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=54.7
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~ 182 (246)
-....+.+++++|..|.. .|+.+. ...|-..-..+.+.+.+.+ |..+|+.=.+. .-.|-...-..+-..
T Consensus 89 ~~~e~~~d~~d~f~~m~~-kgIg~~lalfYe~~a~~lE~k~~~ke----A~~v~q~Giq~-----~aeP~~rL~~~~~~F 158 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLEN-KGIGTTLALFYEAYAKHLERKEYFKE----AKEVFQLGIQN-----KAEPLERLLRQYSNF 158 (974)
T ss_pred HHHHHHhhHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh-----hcCCHHHHHHHHHHH
Confidence 356678999999999999 899888 5556677888888999999 99999998777 566766544433333
Q ss_pred HHh
Q 043380 183 LAA 185 (246)
Q Consensus 183 ~~~ 185 (246)
..+
T Consensus 159 ~~r 161 (974)
T KOG1166|consen 159 QQR 161 (974)
T ss_pred HHH
Confidence 333
No 481
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.81 E-value=1.7e+02 Score=18.69 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 112 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
+.++++.+.+ .|+ .+......+-.+-...|+.+. |.+++..+. + . +..|..++.++-..|.-+.
T Consensus 21 ~~~v~d~ll~-~~i-lT~~d~e~I~aa~~~~g~~~~----ar~LL~~L~-r-------g--~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLE-QGL-LTEEDRNRIEAATENHGNESG----ARELLKRIV-Q-------K--EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHh-cCC-CCHHHHHHHHHhccccCcHHH----HHHHHHHhc-c-------C--CcHHHHHHHHHHHcCchhh
Confidence 4567777777 664 333344444443345678888 888888887 4 1 3467788888888777666
Q ss_pred Hhh
Q 043380 192 VKS 194 (246)
Q Consensus 192 a~~ 194 (246)
|.+
T Consensus 85 A~e 87 (88)
T cd08819 85 ARE 87 (88)
T ss_pred hhc
Confidence 543
No 482
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=27.66 E-value=3.2e+02 Score=21.91 Aligned_cols=21 Identities=0% Similarity=0.081 Sum_probs=11.4
Q ss_pred CCcchhhHHHHHHHHHhcCCh
Q 043380 169 LWPKPHLYVSMMHELAARVDY 189 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~ 189 (246)
-.++...|-.++.+|+-...+
T Consensus 126 ~~lea~gFL~lla~fgi~s~F 146 (290)
T PF07899_consen 126 NSLEALGFLQLLAAFGIVSEF 146 (290)
T ss_pred CCHHHHHHHHHHHHcCCcccc
Confidence 344555566666665555544
No 483
>PRK09687 putative lyase; Provisional
Probab=27.34 E-value=3.2e+02 Score=21.71 Aligned_cols=131 Identities=11% Similarity=-0.049 Sum_probs=64.1
Q ss_pred hcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHhccCCCC
Q 043380 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL----DVTMPFNEQLKDNGQKCS 85 (246)
Q Consensus 10 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~ 85 (246)
...-.+|..+....+.++...|..+.... +..+.+ .+|...-...+.+++..|+. +++...+..+...
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----- 101 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRGGQDVFRL-AIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE----- 101 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCcchHHHH-HHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-----
Confidence 33355666666677777776665333333 333322 34555555556666666653 3466666655333
Q ss_pred CCCCCccHHHHHHHHHHHHccCCH-----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHH
Q 043380 86 SGGFHPDIFTYATLLMGFRHAKDL-----QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160 (246)
Q Consensus 86 ~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~ 160 (246)
.|+...-...+.++...+.. ..+...+..... .++..+=-..+.++++.++. . +...+-.+.
T Consensus 102 ----D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~~-~----ai~~L~~~L 168 (280)
T PRK09687 102 ----DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVINDE-A----AIPLLINLL 168 (280)
T ss_pred ----CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCCH-H----HHHHHHHHh
Confidence 45555555555555544321 223333333222 12444444555555555542 3 444444444
Q ss_pred H
Q 043380 161 K 161 (246)
Q Consensus 161 ~ 161 (246)
+
T Consensus 169 ~ 169 (280)
T PRK09687 169 K 169 (280)
T ss_pred c
Confidence 4
No 484
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.01 E-value=1.8e+02 Score=27.40 Aligned_cols=128 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAM 135 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 135 (246)
++|..+-+.|.++-|+.+.+.=..+ ...+..+|+.+.|++.-..+-+ ..+|..|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR-------------------F~LaLe~gnle~ale~akkldd-------~d~w~rL 678 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR-------------------FELALECGNLEVALEAAKKLDD-------KDVWERL 678 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh-------------------eeeehhcCCHHHHHHHHHhcCc-------HHHHHHH
Q ss_pred HHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHH
Q 043380 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEA 215 (246)
Q Consensus 136 i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 215 (246)
...-...|+..- |+..|++.+. |..|-..|.-.|+.++..++-...+..+ -
T Consensus 679 ge~Al~qgn~~I----aEm~yQ~~kn--------------fekLsfLYliTgn~eKL~Km~~iae~r~-----------D 729 (1202)
T KOG0292|consen 679 GEEALRQGNHQI----AEMCYQRTKN--------------FEKLSFLYLITGNLEKLSKMMKIAEIRN-----------D 729 (1202)
T ss_pred HHHHHHhcchHH----HHHHHHHhhh--------------hhheeEEEEEeCCHHHHHHHHHHHHhhh-----------h
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 043380 216 GHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 216 ~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
.......-.-.|++++-.++++.
T Consensus 730 ~~~~~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 730 ATGQFQNALYLGDVKERVKILEN 752 (1202)
T ss_pred hHHHHHHHHHhccHHHHHHHHHh
No 485
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.82 E-value=1.7e+02 Score=18.52 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=39.8
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHH
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 233 (246)
-|...-..+-..+...|+++.|.+.+-.+.+.+.+.-. .. +-..|+..+.-.|.-+...
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~-~~---ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED-DA---ARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC-CH---HHHHHHHHHHHH-TT-HHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc-cH---HHHHHHHHHHHcCCCChHH
Confidence 35577788889999999999999999998876644322 22 4577888887777755433
No 486
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=25.96 E-value=4.1e+02 Score=24.41 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=43.3
Q ss_pred ccCcCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHh-----CCCCCHHH---HHHHHHHHHhcCCcchHHHHHHHH
Q 043380 12 HWKLNTIVMNAVIEASREAQR----IDEAYQILESVEK-----GLEPDSLS---YNILISACIKTKKLDVTMPFNEQL 77 (246)
Q Consensus 12 ~~~~~~~~~~~li~~~~~~g~----~~~a~~~~~~~~~-----~~~~~~~t---~~~li~~~~~~~~~~~a~~~~~~m 77 (246)
|.+.|+..|..|+.++....+ ++++.++++.+++ |+.+.... -..+.+-|...|+.+........+
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L 289 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQL 289 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 478999999999999887433 5778888877764 55543221 124667777788655544444333
No 487
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=25.80 E-value=2.1e+02 Score=19.18 Aligned_cols=88 Identities=17% Similarity=0.268 Sum_probs=49.4
Q ss_pred HHHHHHHHHHH--hCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHH
Q 043380 34 DEAYQILESVE--KGLEP-DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 34 ~~a~~~~~~~~--~~~~~-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 110 (246)
+++.+.+..++ -|+.| |+..--++...+.....++. ..... +.|++.+..||. |+++
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-----~~~~~------d~g~e~~~~t~~---------Ge~~ 65 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-----EDIKD------DSGLELNWKTFT---------GEYD 65 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-----CccCC------CCCeEEeeeeec---------CchH
Confidence 46677777775 36777 66555555444444333331 01111 125555555554 7776
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 043380 111 SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143 (246)
Q Consensus 111 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 143 (246)
+....+-.+.. |...|...+...+..+...|
T Consensus 66 ~~~~~ll~q~~--g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 66 DIYEALLKQRY--GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHh
Confidence 66655555443 55567777777777776655
No 488
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=25.70 E-value=4.3e+02 Score=22.75 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 114 EIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
++|..+++ ..+.||...+.-+...|++.=-++- |-++|+-....
T Consensus 460 ~L~~Hl~k-l~l~PDiylidwiftlyskslpldl----acRIwDvy~rd 503 (586)
T KOG2223|consen 460 KLFTHLKK-LELTPDIYLIDWIFTLYSKSLPLDL----ACRIWDVYCRD 503 (586)
T ss_pred HHHHHHHh-ccCCCchhhHHHHHHHHhccCChHH----hhhhhheeeec
Confidence 34555666 7788888888888888888888888 88887766544
No 489
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.38 E-value=4e+02 Score=22.26 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=40.5
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHh--cCChhhhhhHHHHHHHHHHHh
Q 043380 102 GFRHAKDLQSLLEIVFEMKSCCNLILDRS--TFTAMVDALLY--SGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~--~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+-..+++..|.++|+.+.. . +.++.. .+..+..+|.. .-++++ |.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~-r-l~~~~~~~~~~~l~~~y~~WD~fd~~~----A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLR-R-LPGREEYQRYKDLCEGYDAWDRFDHKE----ALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHH-h-CCchhhHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHH
Confidence 34478999999999999999 5 655554 45555555554 556777 99999987764
No 490
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=25.26 E-value=3.9e+02 Score=26.48 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHH
Q 043380 34 DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLL 113 (246)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 113 (246)
+.|.++.+.++..-.+.. ...++.-|.-..+---|+-.+.+..-+ .||..|-..||.==...++|..
T Consensus 50 ~~a~~l~~~~r~~~~~~~--~~~~~~e~~l~~~eg~~lm~laeallr---------~pd~~t~d~li~dk~~~~~w~~-- 116 (1208)
T PRK11905 50 ERARKLVEALRAKRKGTG--VEALLQEYSLSSQEGVALMCLAEALLR---------IPDTATRDALIRDKIAPGDWKS-- 116 (1208)
T ss_pred HHHHHHHHHHHcCCCccc--HHHHHHhcCCCcHHHHHHHHHHHHhhc---------CCChHHHHHHHHHHhccCChhh--
Confidence 345555566653222222 666666666655555566666665554 6888888888888888888732
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChhhhhhHHHHHHHHHHHhhcCCCCCCcchh-----hHHHHHHHHHhcC
Q 043380 114 EIVFEMKSCCNLILDRSTFTAMVDALLYSG-SIKVVGLYALCIFGEIVKRVCSNPGLWPKPH-----LYVSMMHELAARV 187 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~-----~~~~li~~~~~~g 187 (246)
.+.+...+.-|..||..++.+-.-.. +-.. ....+..+.++ .-.|-.. ....|-+-|+.-.
T Consensus 117 ----h~~~~~~~~vna~~w~l~~~~~~~~~~~~~~----~~~~~~~~~~~-----~~~p~i~~~~~~am~~~~~qFv~Ge 183 (1208)
T PRK11905 117 ----HLGGSKSLFVNAATWGLMLTGKLLSTVNDRG----LSAALTRLIAR-----LGEPVIRKAVDMAMRMMGEQFVTGE 183 (1208)
T ss_pred ----hcCCCCcceeeHHHHHHHHhceecCccccCC----HHHHHHHHHHh-----ccHHHHHHHHHHHHHHHhCeeccCC
Confidence 22221335567788888887654432 2233 45666777666 3334331 1233444455566
Q ss_pred ChhHHhhHHHhhCCCC
Q 043380 188 DYDIVKSPYRRMWPDS 203 (246)
Q Consensus 188 ~~~~a~~~~~~~~~~~ 203 (246)
..++|.+..+++...+
T Consensus 184 ti~eal~~~~~l~~~G 199 (1208)
T PRK11905 184 TIEEALKRARELEARG 199 (1208)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7889999998887665
No 491
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=24.63 E-value=3.1e+02 Score=22.14 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=45.2
Q ss_pred ccHHHHHHHH---HHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 91 PDIFTYATLL---MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 91 p~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
|....-..|| .+|......|....+++..+.....-.....|+.+++-...-|++.+ ..-+|+.+.+.
T Consensus 18 ~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~e----m~yifd~L~~n 88 (296)
T PF14649_consen 18 QLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYRE----MTYIFDILIEN 88 (296)
T ss_pred CccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHH----HHHHHHHHHHc
Confidence 4555556666 55666777777777777555511122334558888888888888888 77777777665
No 492
>PRK10292 hypothetical protein; Provisional
Probab=24.54 E-value=1.6e+02 Score=17.42 Aligned_cols=47 Identities=9% Similarity=0.207 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHh------------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 043380 31 QRIDEAYQILESVEK------------GLEPDSLSYNILISACIKTKKLDVTMPFNEQL 77 (246)
Q Consensus 31 g~~~~a~~~~~~~~~------------~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m 77 (246)
|+..++..+|++|-+ |.+|.......+|+.-..+++..........|
T Consensus 2 ~n~~~~d~lY~EmCRVVGdvVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 2 GNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 344555566665532 78888888888886655555544433333333
No 493
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=24.45 E-value=4e+02 Score=21.83 Aligned_cols=87 Identities=9% Similarity=0.065 Sum_probs=43.3
Q ss_pred HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhh
Q 043380 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQ 212 (246)
Q Consensus 134 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 212 (246)
-+|.-|++..++.. .+..+++-.. +..|. .+...++.- ...|+||.+.+..+.++-. ...-
T Consensus 12 rli~QflKE~~L~r----tl~tLQeEt~-------VSLNTVDSvd~Fv~d-I~sG~WD~VL~~vqsLKLP------~kkL 73 (508)
T KOG0275|consen 12 RLIEQFLKENSLHR----TLQTLQEETN-------VSLNTVDSVDGFVND-INSGHWDTVLKTVQSLKLP------DKKL 73 (508)
T ss_pred HHHHHHHhhhhHHH----HHHHHHHhhc-------cceeechhHHHHHHh-cccCchHHHHHHHHhccCc------hhHH
Confidence 35556666666666 5555544322 22222 122222221 3467777777777766522 2211
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHH
Q 043380 213 EEAGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
...|..++--++....+..|..++++
T Consensus 74 ~dLYEqivlEliELREL~tAR~~lRQ 99 (508)
T KOG0275|consen 74 IDLYEQIVLELIELRELGTARSLLRQ 99 (508)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 22566666666666666666655543
No 494
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=24.26 E-value=5.4e+02 Score=23.31 Aligned_cols=96 Identities=13% Similarity=-0.001 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccC
Q 043380 30 AQRIDEAYQILESVE--KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK 107 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~--~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 107 (246)
.|+...|..-+.... +-.. .-+..-.|.+...+.+....|..++.+.... . ....-++..+-++|....
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-------~-~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALAI-------N-SSEPLTFLSLGNAYLALK 690 (886)
T ss_pred cCCcHHHHHHHHHHhccChhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHhh-------c-ccCchHHHhcchhHHHHh
Confidence 477888887776543 1111 2233344455556667778888888887765 2 333457788888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCC-HHHHHHHHH
Q 043380 108 DLQSLLEIVFEMKSCCNLILD-RSTFTAMVD 137 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 137 (246)
++++|++.|++..+ ..|+ ...-+.|..
T Consensus 691 ~i~~a~~~~~~a~~---~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 691 NISGALEAFRQALK---LTTKCPECENSLKL 718 (886)
T ss_pred hhHHHHHHHHHHHh---cCCCChhhHHHHHH
Confidence 99999999998877 3344 444444443
No 495
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.76 E-value=2.6e+02 Score=19.51 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=40.5
Q ss_pred CCCccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhh
Q 043380 88 GFHPDIFTYATLLMGFRHA-KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 147 (246)
|+.++..= ..++..+... +..-.|.++++.+.+ .+...+..|..--+..+...|-+..
T Consensus 12 glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~-~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 12 GLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLID-MGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred CCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 56555432 3444555443 568899999999998 7777777776667788888887765
No 496
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=23.71 E-value=2.3e+02 Score=18.79 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=47.8
Q ss_pred HHHHHHHHHHH--hCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHH
Q 043380 34 DEAYQILESVE--KGLEP-DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 34 ~~a~~~~~~~~--~~~~~-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 110 (246)
++|.+.+.+++ -|+.| |+..--++...+..-..+..+ .... +.+++.|..||. |+++
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~-----~~~~------d~~~E~~~~T~~---------Ge~~ 64 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVA-----DIKL------DGNVEIDWYTFA---------GEYG 64 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCcc-----ccCC------CCCeEEEeeeec---------CchH
Confidence 46777788876 36667 555444444443333223211 0111 124555555554 7766
Q ss_pred HHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHhcC
Q 043380 111 SLLEIVFEMK--SCCNLILDRSTFTAMVDALLYSG 143 (246)
Q Consensus 111 ~a~~~~~~m~--~~~~~~p~~~~~~~li~~~~~~~ 143 (246)
.....+=... . .+..+|...+...+.++...|
T Consensus 65 ~i~~alLkq~~~~-~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 65 DIYLALLKQRCVA-DGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHHHH
Confidence 6555444333 3 456677777777777776655
No 497
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=23.63 E-value=1.8e+02 Score=17.60 Aligned_cols=64 Identities=17% Similarity=0.060 Sum_probs=44.1
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
-.+|..+=...+.+.++.++. ++...+..+-+ .+|..+-...+.++.+.|. +++...+.++...
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGDP-EAIPALIELLK--DEDPMVRRAAARALGRIGD-PEAIPALIKLLQD 73 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTHH-HHHHHHHHHHT--SSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcC
Confidence 356666667788888877755 44555544432 6888888888899888885 5566666666654
No 498
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.18 E-value=2.9e+02 Score=20.04 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=31.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+..++..-.+......+..++++.+- .+....-|.-+...|+++. +...|...+..
T Consensus 59 ~~~pll~~~~k~~~l~~~l~~l~r~~f-------lF~LP~~L~~~i~~~dy~~----~i~dY~kak~l 115 (182)
T PF15469_consen 59 VFKPLLERREKADKLRNALEFLQRNRF-------LFNLPSNLRECIKKGDYDQ----AINDYKKAKSL 115 (182)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHcCcHHH----HHHHHHHHHHH
Confidence 344444444444444555555554443 3334456666677777777 77777666554
No 499
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.07 E-value=4.1e+02 Score=21.52 Aligned_cols=140 Identities=12% Similarity=0.015 Sum_probs=86.2
Q ss_pred CccHHHHHHHHHHHHcc------------CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHH
Q 043380 90 HPDIFTYATLLMGFRHA------------KDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIF 156 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~------------~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~ 156 (246)
+-|+.+|-.++..--.. .-.+.-+.++++..+ . .|+ ....-.+|..+.+..+.+. ..+-|
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~-~--np~~~~L~l~~l~~~~~~~~~~~----l~~~w 88 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK-H--NPDSERLLLGYLEEGEKVWDSEK----LAKKW 88 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHhCCHHH----HHHHH
Confidence 44566777776553221 113566778888888 4 455 6777888999999888888 89999
Q ss_pred HHHHHhhcCCCCCCcchhhHHHHHHHHHhc---CChhHHhhHHHhhC----CCCCCC-----CCchhh---hHHHHHHHH
Q 043380 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAAR---VDYDIVKSPYRRMW----PDSTGT-----ISPEVQ---EEAGHLLME 221 (246)
Q Consensus 157 ~~m~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~----~~~~~~-----~~~~~~---~~~~~~li~ 221 (246)
+++... ..-+...|...|...... -.++....+|.+.. ....+. ..+... .+.+.-+..
T Consensus 89 e~~l~~------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 89 EELLFK------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHH------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 999886 222456777777665552 24556665555433 111110 111111 112333444
Q ss_pred HHHhcCChhHHHHHHHHHHhh
Q 043380 222 AALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~ 242 (246)
.+..+|..+.|..+++-+.+-
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHH
Confidence 456799999999999988753
No 500
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=22.98 E-value=5.2e+02 Score=26.00 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
...++.-|.-..+---|+..+.+..- -.||..|-..||+-=...|+|.. ++-+. +.+-.|..|
T Consensus 148 ~~~~l~e~~ls~~eg~~lmclaeall---ripd~~t~d~li~dki~~~~w~~----------h~~~s----~s~~vna~~ 210 (1318)
T PRK11809 148 VQGLLQEFSLSSQEGVALMCLAEALL---RIPDKATRDALIRDKISNGNWQS----------HLGRS----PSLFVNAAT 210 (1318)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHh---cCCChHHHHHHHHhhhccCChhh----------hcCCC----ccceeeHHH
Confidence 34455555444444444444444333 23777777777776666666665 33222 245567777
Q ss_pred HHHHHHHHHhcC-ChhHHhhHHHhhCCCCCCCCCchhhhH---HHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 176 YVSMMHELAARV-DYDIVKSPYRRMWPDSTGTISPEVQEE---AGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 176 ~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
|..++.+=.-.- +-..-...+..+.... -.|.+... ....|-+-|+-...+++|.+..+.+.++|.
T Consensus 211 w~l~~t~~~~~~~~~~~~~~~l~~~~~~~---g~p~ir~~~~~a~~~m~~qFV~Geti~eal~~~~~l~~~G~ 280 (1318)
T PRK11809 211 WGLLFTGKLVSTHNEASLSSSLNRIIGKS---GEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGF 280 (1318)
T ss_pred HHHHHhceecCCCCCcCHHHHHHHHHHhc---cCHHHHHHHHHHHHHhcCeeecCCCHHHHHHHHHHHHhCCC
Confidence 777776533221 1112233444443221 11111110 111233345556667888888777777663
Done!