Query 043380
Match_columns 246
No_of_seqs 261 out of 1411
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 07:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.5E-37 1.2E-41 258.8 23.6 199 6-226 14-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.1E-34 1.4E-38 240.2 19.9 169 2-187 46-224 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.4E-23 4.6E-28 183.3 11.0 161 49-227 125-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 1.7E-23 5.8E-28 182.7 9.4 152 14-187 124-286 (1134)
5 2xpi_A Anaphase-promoting comp 99.9 1.1E-20 3.9E-25 161.8 21.1 202 14-242 302-504 (597)
6 2xpi_A Anaphase-promoting comp 99.9 4.7E-20 1.6E-24 158.0 23.7 210 14-244 370-581 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.8 1.9E-16 6.4E-21 128.9 25.9 202 15-244 167-370 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.7 8.7E-16 3E-20 124.9 23.1 207 13-241 63-299 (388)
9 2y4t_A DNAJ homolog subfamily 99.7 5.3E-16 1.8E-20 128.3 22.1 205 13-244 22-242 (450)
10 2ho1_A Type 4 fimbrial biogene 99.7 2.9E-15 1E-19 114.4 23.8 203 17-244 37-240 (252)
11 2pl2_A Hypothetical conserved 99.7 4.4E-16 1.5E-20 117.0 18.2 200 14-241 2-213 (217)
12 2y4t_A DNAJ homolog subfamily 99.7 1.5E-15 5.2E-20 125.6 22.7 204 13-244 56-288 (450)
13 2vq2_A PILW, putative fimbrial 99.7 5.3E-15 1.8E-19 110.6 22.9 207 14-244 5-213 (225)
14 4eqf_A PEX5-related protein; a 99.7 9.5E-16 3.2E-20 123.6 19.9 206 14-244 96-312 (365)
15 2q7f_A YRRB protein; TPR, prot 99.7 2.3E-15 7.8E-20 114.2 17.7 206 13-244 19-224 (243)
16 3hym_B Cell division cycle pro 99.7 1.6E-14 5.4E-19 114.3 21.6 209 14-243 87-300 (330)
17 4eqf_A PEX5-related protein; a 99.7 4.1E-15 1.4E-19 119.9 17.0 204 16-244 64-278 (365)
18 1fch_A Peroxisomal targeting s 99.7 3.1E-14 1.1E-18 114.5 22.1 202 17-243 64-315 (368)
19 3uq3_A Heat shock protein STI1 99.7 3.3E-14 1.1E-18 108.5 21.0 204 17-243 5-237 (258)
20 1fch_A Peroxisomal targeting s 99.7 3.7E-14 1.3E-18 114.1 22.0 213 13-238 94-355 (368)
21 3hym_B Cell division cycle pro 99.7 6.2E-14 2.1E-18 110.8 22.9 210 14-244 53-267 (330)
22 3cv0_A Peroxisome targeting si 99.6 2E-14 6.7E-19 113.6 18.8 203 14-244 52-271 (327)
23 3ieg_A DNAJ homolog subfamily 99.6 1.1E-13 3.6E-18 110.6 23.2 202 16-244 2-219 (359)
24 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.2E-14 1.4E-18 109.1 18.7 206 15-244 41-246 (275)
25 3mkr_A Coatomer subunit epsilo 99.6 7.5E-14 2.6E-18 109.5 20.1 200 13-244 61-266 (291)
26 3ieg_A DNAJ homolog subfamily 99.6 4.2E-13 1.4E-17 107.1 23.1 204 13-244 33-265 (359)
27 2gw1_A Mitochondrial precursor 99.6 1.1E-13 3.8E-18 116.0 20.1 209 15-244 268-480 (514)
28 2gw1_A Mitochondrial precursor 99.6 3.2E-13 1.1E-17 113.2 21.7 213 14-243 36-334 (514)
29 3fp2_A TPR repeat-containing p 99.6 1.4E-13 4.6E-18 116.3 18.3 211 13-244 272-493 (537)
30 3cv0_A Peroxisome targeting si 99.6 1.6E-13 5.6E-18 108.3 17.7 202 16-244 20-237 (327)
31 3mkr_A Coatomer subunit epsilo 99.6 9.9E-14 3.4E-18 108.9 15.8 192 19-244 36-231 (291)
32 3nf1_A KLC 1, kinesin light ch 99.5 2.7E-13 9.4E-18 106.2 16.3 226 13-243 23-308 (311)
33 3vtx_A MAMA; tetratricopeptide 99.5 2.7E-12 9.4E-17 93.3 19.9 167 15-202 3-170 (184)
34 3u4t_A TPR repeat-containing p 99.5 1.6E-12 5.5E-17 100.1 18.8 208 15-244 35-252 (272)
35 3vtx_A MAMA; tetratricopeptide 99.5 2.3E-12 7.9E-17 93.7 18.4 168 49-243 3-171 (184)
36 2ond_A Cleavage stimulation fa 99.5 7.8E-12 2.7E-16 98.7 22.5 209 13-244 46-272 (308)
37 2ho1_A Type 4 fimbrial biogene 99.5 5.2E-12 1.8E-16 96.2 20.5 170 14-203 68-239 (252)
38 3fp2_A TPR repeat-containing p 99.5 1.8E-12 6E-17 109.4 19.5 206 17-244 243-459 (537)
39 4abn_A Tetratricopeptide repea 99.5 3.1E-13 1.1E-17 113.1 14.5 198 13-239 98-318 (474)
40 2q7f_A YRRB protein; TPR, prot 99.5 7E-12 2.4E-16 94.8 20.5 169 14-203 54-223 (243)
41 1b89_A Protein (clathrin heavy 99.5 1.3E-14 4.3E-19 118.2 5.2 145 15-199 30-174 (449)
42 3as5_A MAMA; tetratricopeptide 99.5 7.4E-12 2.5E-16 90.3 19.2 165 17-201 8-172 (186)
43 2pl2_A Hypothetical conserved 99.5 3.2E-12 1.1E-16 95.8 17.6 166 13-200 35-212 (217)
44 1ouv_A Conserved hypothetical 99.5 5.2E-11 1.8E-15 92.0 24.8 194 15-244 36-253 (273)
45 2vq2_A PILW, putative fimbrial 99.5 1.2E-11 4E-16 92.2 20.3 169 14-202 39-211 (225)
46 1b89_A Protein (clathrin heavy 99.5 9.1E-14 3.1E-18 113.2 8.9 188 4-241 47-235 (449)
47 1ouv_A Conserved hypothetical 99.5 1.1E-10 3.9E-15 90.1 25.4 193 15-243 4-216 (273)
48 3as5_A MAMA; tetratricopeptide 99.5 5.8E-12 2E-16 90.9 16.5 167 51-244 8-175 (186)
49 3uq3_A Heat shock protein STI1 99.4 1.9E-11 6.4E-16 93.0 19.0 183 4-201 27-235 (258)
50 3u4t_A TPR repeat-containing p 99.4 7.9E-12 2.7E-16 96.2 16.9 201 18-242 4-208 (272)
51 2h6f_A Protein farnesyltransfe 99.4 3.2E-11 1.1E-15 98.0 20.6 199 14-241 128-347 (382)
52 2h6f_A Protein farnesyltransfe 99.4 1.5E-11 5.1E-16 100.0 18.4 197 16-239 96-302 (382)
53 3edt_B KLC 2, kinesin light ch 99.4 1.9E-11 6.5E-16 94.2 17.2 219 14-243 40-282 (283)
54 4abn_A Tetratricopeptide repea 99.4 1.5E-11 5.1E-16 102.9 17.7 188 33-244 84-289 (474)
55 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.9E-12 2.7E-16 96.2 14.0 195 14-236 74-269 (275)
56 4gyw_A UDP-N-acetylglucosamine 99.4 3.7E-11 1.3E-15 105.0 19.7 163 15-200 7-172 (723)
57 4gyw_A UDP-N-acetylglucosamine 99.4 2E-11 6.9E-16 106.7 17.3 164 49-241 7-173 (723)
58 2ooe_A Cleavage stimulation fa 99.4 4.3E-10 1.5E-14 95.2 23.6 206 13-242 268-492 (530)
59 4i17_A Hypothetical protein; T 99.4 1.6E-10 5.4E-15 86.9 18.7 173 48-244 4-211 (228)
60 2ond_A Cleavage stimulation fa 99.3 2E-10 7E-15 90.5 19.1 199 17-242 8-232 (308)
61 4a1s_A PINS, partner of inscut 99.3 3.9E-11 1.3E-15 97.9 13.9 219 17-242 48-292 (411)
62 3sf4_A G-protein-signaling mod 99.3 8E-11 2.7E-15 95.5 15.6 221 13-241 5-255 (406)
63 1qqe_A Vesicular transport pro 99.3 3.3E-10 1.1E-14 88.6 18.1 208 18-240 38-267 (292)
64 2fo7_A Synthetic consensus TPR 99.3 5E-10 1.7E-14 76.1 16.6 130 19-162 3-132 (136)
65 4a1s_A PINS, partner of inscut 99.3 3.3E-11 1.1E-15 98.4 12.4 223 14-242 123-372 (411)
66 4i17_A Hypothetical protein; T 99.3 4.3E-10 1.5E-14 84.4 17.6 153 15-189 5-169 (228)
67 3sf4_A G-protein-signaling mod 99.3 7.7E-11 2.6E-15 95.6 13.8 220 17-242 47-296 (406)
68 3ro2_A PINS homolog, G-protein 99.3 7.8E-11 2.7E-15 92.8 13.3 217 17-241 5-251 (338)
69 3qky_A Outer membrane assembly 99.3 4.2E-10 1.4E-14 86.4 16.9 201 13-231 11-250 (261)
70 3ro2_A PINS homolog, G-protein 99.3 4.4E-11 1.5E-15 94.2 11.3 221 17-243 83-333 (338)
71 3ulq_A Response regulator aspa 99.2 1.1E-09 3.7E-14 88.9 18.0 215 16-244 142-370 (383)
72 3nf1_A KLC 1, kinesin light ch 99.2 3.5E-10 1.2E-14 88.4 14.0 183 13-200 65-305 (311)
73 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.5E-14 74.5 14.7 126 54-199 4-129 (136)
74 3qky_A Outer membrane assembly 99.2 2.6E-09 8.8E-14 82.0 18.5 174 48-244 12-226 (261)
75 1hz4_A MALT regulatory protein 99.2 1.7E-08 5.9E-13 81.3 22.9 214 19-242 55-282 (373)
76 4g1t_A Interferon-induced prot 99.2 5.2E-09 1.8E-13 86.9 20.4 212 14-244 48-278 (472)
77 3qou_A Protein YBBN; thioredox 99.2 2.8E-09 9.6E-14 83.2 16.6 168 48-241 114-283 (287)
78 3mv2_B Coatomer subunit epsilo 99.1 4.2E-09 1.4E-13 82.3 16.9 184 36-244 85-284 (310)
79 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.3E-09 7.9E-14 80.5 15.0 172 51-245 4-216 (225)
80 3qou_A Protein YBBN; thioredox 99.1 5.2E-09 1.8E-13 81.7 17.0 175 5-199 105-281 (287)
81 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.6E-09 1.9E-13 78.4 16.6 173 16-207 3-218 (225)
82 2ooe_A Cleavage stimulation fa 99.1 1.4E-08 4.8E-13 86.0 20.7 199 18-243 231-455 (530)
83 3mv2_B Coatomer subunit epsilo 99.1 1.9E-08 6.5E-13 78.6 18.9 169 14-203 97-283 (310)
84 2r5s_A Uncharacterized protein 99.1 4.9E-09 1.7E-13 75.6 14.4 163 53-241 8-172 (176)
85 3ulq_A Response regulator aspa 99.1 3E-09 1E-13 86.2 14.2 209 23-239 109-332 (383)
86 3urz_A Uncharacterized protein 99.1 8.4E-09 2.9E-13 76.5 15.5 164 18-203 5-187 (208)
87 3q15_A PSP28, response regulat 99.1 4E-08 1.4E-12 79.5 20.4 212 16-242 140-365 (378)
88 2vsy_A XCC0866; transferase, g 99.1 5.6E-09 1.9E-13 89.2 16.0 132 16-162 22-157 (568)
89 2ifu_A Gamma-SNAP; membrane fu 99.0 2.6E-08 8.7E-13 78.4 17.9 206 18-235 37-254 (307)
90 2vsy_A XCC0866; transferase, g 99.0 7.1E-09 2.4E-13 88.5 15.4 155 64-245 2-160 (568)
91 4ga2_A E3 SUMO-protein ligase 99.0 3.6E-09 1.2E-13 74.3 11.2 142 25-188 5-149 (150)
92 3edt_B KLC 2, kinesin light ch 99.0 3.2E-09 1.1E-13 81.6 11.8 176 62-242 12-198 (283)
93 2pzi_A Probable serine/threoni 99.0 8.1E-09 2.8E-13 90.2 15.5 183 28-238 402-601 (681)
94 2r5s_A Uncharacterized protein 99.0 5.9E-09 2E-13 75.1 12.2 157 20-199 9-170 (176)
95 2xm6_A Protein corresponding t 99.0 4.1E-07 1.4E-11 76.1 24.9 113 106-242 164-288 (490)
96 3u3w_A Transcriptional activat 99.0 4E-08 1.4E-12 76.7 17.6 175 54-241 78-265 (293)
97 2xm6_A Protein corresponding t 99.0 6.6E-07 2.3E-11 74.9 26.1 191 17-243 111-326 (490)
98 3urz_A Uncharacterized protein 99.0 4.1E-08 1.4E-12 72.8 16.6 163 53-244 6-188 (208)
99 1qqe_A Vesicular transport pro 99.0 2.8E-08 9.6E-13 77.6 15.8 188 32-241 32-227 (292)
100 1hz4_A MALT regulatory protein 99.0 5.5E-08 1.9E-12 78.3 17.4 214 18-241 94-321 (373)
101 2ifu_A Gamma-SNAP; membrane fu 99.0 7.1E-09 2.4E-13 81.6 11.6 202 30-240 4-222 (307)
102 1na0_A Designed protein CTPR3; 98.9 6.6E-08 2.3E-12 64.5 14.2 114 17-141 9-123 (125)
103 3gw4_A Uncharacterized protein 98.9 2.5E-08 8.4E-13 73.0 12.9 167 27-200 2-174 (203)
104 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2E-07 6.9E-12 68.8 17.8 130 18-162 7-150 (213)
105 3q15_A PSP28, response regulat 98.9 1.7E-07 5.8E-12 75.8 18.8 208 23-238 107-328 (378)
106 3u3w_A Transcriptional activat 98.9 5E-07 1.7E-11 70.4 19.9 173 22-200 80-264 (293)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.2E-07 4.2E-12 69.9 15.5 136 94-244 7-152 (213)
108 4e6h_A MRNA 3'-END-processing 98.9 6.7E-07 2.3E-11 77.7 22.0 216 13-243 339-571 (679)
109 4g1t_A Interferon-induced prot 98.9 5.9E-07 2E-11 74.4 20.9 132 16-162 135-276 (472)
110 2vyi_A SGTA protein; chaperone 98.9 9.9E-08 3.4E-12 64.2 13.5 121 14-145 9-130 (131)
111 1a17_A Serine/threonine protei 98.9 1.5E-07 5.3E-12 66.3 14.8 131 17-162 13-146 (166)
112 2qfc_A PLCR protein; TPR, HTH, 98.9 2.2E-07 7.6E-12 72.4 17.0 177 51-240 75-264 (293)
113 3gw4_A Uncharacterized protein 98.9 5.8E-08 2E-12 71.0 12.9 167 62-241 3-175 (203)
114 2qfc_A PLCR protein; TPR, HTH, 98.9 5E-07 1.7E-11 70.4 19.0 175 18-200 76-264 (293)
115 1xi4_A Clathrin heavy chain; a 98.8 5.8E-07 2E-11 82.4 20.7 181 15-239 1103-1306(1630)
116 4ga2_A E3 SUMO-protein ligase 98.8 1.1E-08 3.7E-13 71.9 7.8 141 59-228 5-149 (150)
117 2pzi_A Probable serine/threoni 98.8 3.2E-08 1.1E-12 86.4 12.3 161 62-243 402-564 (681)
118 2lni_A Stress-induced-phosphop 98.8 1.7E-07 5.8E-12 63.4 13.0 120 13-143 12-132 (133)
119 3rjv_A Putative SEL1 repeat pr 98.8 1E-06 3.4E-11 65.4 17.8 175 36-243 5-198 (212)
120 2lni_A Stress-induced-phosphop 98.8 5.6E-07 1.9E-11 60.7 14.9 119 48-187 13-132 (133)
121 1na0_A Designed protein CTPR3; 98.8 4.7E-07 1.6E-11 60.3 14.2 115 51-185 9-123 (125)
122 1a17_A Serine/threonine protei 98.8 4.9E-07 1.7E-11 63.6 15.0 127 52-199 14-143 (166)
123 4gco_A Protein STI-1; structur 98.8 4E-07 1.4E-11 61.8 13.7 108 17-135 13-121 (126)
124 1xi4_A Clathrin heavy chain; a 98.8 9.1E-07 3.1E-11 81.1 19.5 165 25-240 1083-1248(1630)
125 3gyz_A Chaperone protein IPGC; 98.8 1.5E-07 5E-12 66.2 11.7 104 16-130 35-138 (151)
126 2c2l_A CHIP, carboxy terminus 98.8 4.7E-08 1.6E-12 76.0 10.0 195 15-241 2-198 (281)
127 3rjv_A Putative SEL1 repeat pr 98.7 8E-06 2.7E-10 60.5 21.1 161 15-202 16-197 (212)
128 2vyi_A SGTA protein; chaperone 98.7 6.1E-07 2.1E-11 60.2 13.9 117 51-188 12-129 (131)
129 1elr_A TPR2A-domain of HOP; HO 98.7 3E-07 1E-11 61.8 12.1 116 17-140 4-123 (131)
130 2e2e_A Formate-dependent nitri 98.7 1.9E-07 6.4E-12 67.0 11.6 119 29-162 22-144 (177)
131 1p5q_A FKBP52, FK506-binding p 98.7 5.1E-07 1.8E-11 72.0 15.0 132 16-162 146-294 (336)
132 4b4t_Q 26S proteasome regulato 98.7 1.3E-06 4.3E-11 71.6 17.6 208 24-241 11-244 (434)
133 1elw_A TPR1-domain of HOP; HOP 98.7 1.6E-06 5.4E-11 57.0 14.5 109 16-135 3-112 (118)
134 4f3v_A ESX-1 secretion system 98.7 1.9E-06 6.6E-11 66.4 16.5 198 29-244 18-239 (282)
135 3ro3_A PINS homolog, G-protein 98.7 1.6E-07 5.4E-12 65.6 9.7 147 93-243 9-159 (164)
136 1p5q_A FKBP52, FK506-binding p 98.7 5E-07 1.7E-11 72.0 13.4 129 50-200 146-292 (336)
137 4gco_A Protein STI-1; structur 98.6 1.7E-06 5.8E-11 58.6 13.6 97 51-162 13-110 (126)
138 3dra_A Protein farnesyltransfe 98.6 3E-05 1E-09 60.8 22.3 206 14-242 64-287 (306)
139 3upv_A Heat shock protein STI1 98.6 1.7E-06 5.8E-11 58.3 13.5 98 16-121 3-100 (126)
140 2e2e_A Formate-dependent nitri 98.6 9E-07 3.1E-11 63.4 12.4 123 62-205 21-147 (177)
141 3gyz_A Chaperone protein IPGC; 98.6 8.1E-07 2.8E-11 62.3 11.7 98 50-162 35-133 (151)
142 4gcn_A Protein STI-1; structur 98.6 1.2E-06 4.2E-11 59.4 12.2 110 17-134 8-121 (127)
143 2fbn_A 70 kDa peptidylprolyl i 98.6 9.5E-08 3.3E-12 70.0 6.8 161 21-200 8-184 (198)
144 3e4b_A ALGK; tetratricopeptide 98.6 2.7E-05 9.4E-10 64.5 22.0 192 15-243 174-388 (452)
145 2vgx_A Chaperone SYCD; alterna 98.6 9.9E-07 3.4E-11 61.6 11.2 98 50-162 20-118 (148)
146 2vgx_A Chaperone SYCD; alterna 98.6 1E-06 3.4E-11 61.6 11.1 99 15-121 19-117 (148)
147 3sz7_A HSC70 cochaperone (SGT) 98.6 2.3E-06 8E-11 60.5 12.9 100 14-121 8-107 (164)
148 2kck_A TPR repeat; tetratricop 98.5 9.7E-07 3.3E-11 57.5 10.2 97 17-121 6-105 (112)
149 2fbn_A 70 kDa peptidylprolyl i 98.5 2.9E-06 9.9E-11 62.0 13.6 132 16-162 37-186 (198)
150 3ro3_A PINS homolog, G-protein 98.5 1E-06 3.4E-11 61.4 10.7 143 52-200 10-156 (164)
151 1wao_1 Serine/threonine protei 98.5 2.9E-06 1E-10 70.9 15.0 151 58-230 13-183 (477)
152 1elr_A TPR2A-domain of HOP; HO 98.5 1.6E-06 5.4E-11 58.2 11.2 113 51-183 4-122 (131)
153 2xcb_A PCRH, regulatory protei 98.5 9E-07 3.1E-11 61.2 9.9 98 16-121 17-114 (142)
154 3q49_B STIP1 homology and U bo 98.5 4.1E-06 1.4E-10 57.0 13.1 99 15-121 7-105 (137)
155 3upv_A Heat shock protein STI1 98.5 4.5E-06 1.5E-10 56.1 13.0 97 51-162 4-101 (126)
156 2dba_A Smooth muscle cell asso 98.5 6.7E-06 2.3E-10 56.4 14.2 111 14-136 25-140 (148)
157 2dba_A Smooth muscle cell asso 98.5 9E-06 3.1E-10 55.8 14.5 99 48-162 25-128 (148)
158 3e4b_A ALGK; tetratricopeptide 98.5 2.7E-05 9.1E-10 64.6 19.7 189 17-243 141-352 (452)
159 3q49_B STIP1 homology and U bo 98.5 4.2E-06 1.4E-10 56.9 12.6 100 48-162 6-106 (137)
160 4gcn_A Protein STI-1; structur 98.5 2.8E-06 9.4E-11 57.6 11.4 106 51-178 8-121 (127)
161 3sz7_A HSC70 cochaperone (SGT) 98.5 4.5E-06 1.5E-10 59.0 12.8 99 49-162 9-108 (164)
162 1elw_A TPR1-domain of HOP; HOP 98.5 7.7E-06 2.6E-10 53.6 13.3 98 50-162 3-101 (118)
163 4b4t_Q 26S proteasome regulato 98.5 1.6E-06 5.3E-11 71.1 11.8 179 59-241 12-203 (434)
164 2kck_A TPR repeat; tetratricop 98.4 3E-06 1E-10 55.1 10.4 98 93-203 6-107 (112)
165 2c2l_A CHIP, carboxy terminus 98.4 2.6E-06 9.1E-11 66.0 11.4 99 49-162 2-101 (281)
166 2xcb_A PCRH, regulatory protei 98.4 7.2E-06 2.5E-10 56.5 12.0 98 50-162 17-115 (142)
167 3q7a_A Farnesyltransferase alp 98.4 0.00025 8.5E-09 56.4 21.8 209 14-242 85-331 (349)
168 4e6h_A MRNA 3'-END-processing 98.4 3.7E-05 1.3E-09 66.8 18.5 202 18-243 303-534 (679)
169 2xev_A YBGF; tetratricopeptide 98.4 1.8E-05 6E-10 53.1 13.1 97 21-129 6-109 (129)
170 1hxi_A PEX5, peroxisome target 98.3 6E-06 2.1E-10 55.4 10.3 93 20-121 20-113 (121)
171 3k9i_A BH0479 protein; putativ 98.3 6E-06 2E-10 54.9 9.4 86 63-162 2-90 (117)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1E-05 3.6E-10 67.2 12.7 147 66-240 249-413 (457)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.8E-05 6E-10 65.8 13.8 131 16-161 267-414 (457)
174 4f3v_A ESX-1 secretion system 98.3 2.8E-05 9.6E-10 60.0 13.8 130 19-162 104-237 (282)
175 1wao_1 Serine/threonine protei 98.3 3.5E-06 1.2E-10 70.4 8.9 120 23-157 12-134 (477)
176 1ihg_A Cyclophilin 40; ppiase 98.2 3.1E-05 1.1E-09 62.5 13.9 129 53-194 225-362 (370)
177 2xev_A YBGF; tetratricopeptide 98.2 4.2E-05 1.4E-09 51.2 12.5 92 55-162 6-105 (129)
178 2if4_A ATFKBP42; FKBP-like, al 98.2 1E-05 3.6E-10 64.4 10.6 132 93-243 179-329 (338)
179 1ihg_A Cyclophilin 40; ppiase 98.2 2E-05 6.9E-10 63.6 12.4 120 17-147 223-359 (370)
180 3rkv_A Putative peptidylprolyl 98.2 2.8E-05 9.5E-10 54.7 11.8 103 17-130 11-131 (162)
181 1hxi_A PEX5, peroxisome target 98.2 1.9E-05 6.5E-10 52.9 10.3 96 95-203 19-115 (121)
182 3n71_A Histone lysine methyltr 98.2 1.7E-05 5.9E-10 66.3 11.9 138 60-201 318-463 (490)
183 2hr2_A Hypothetical protein; a 98.2 7.9E-05 2.7E-09 52.3 13.3 116 52-180 12-149 (159)
184 3rkv_A Putative peptidylprolyl 98.2 7.5E-05 2.5E-09 52.4 13.1 105 51-162 11-126 (162)
185 3k9i_A BH0479 protein; putativ 98.1 4.8E-06 1.6E-10 55.3 5.9 85 29-121 2-89 (117)
186 3n71_A Histone lysine methyltr 98.1 2E-05 6.7E-10 66.0 10.6 131 27-162 319-464 (490)
187 2if4_A ATFKBP42; FKBP-like, al 98.1 1.2E-05 4E-10 64.2 8.6 129 52-203 180-329 (338)
188 2l6j_A TPR repeat-containing p 98.0 2.3E-05 7.9E-10 50.9 7.2 96 91-200 2-105 (111)
189 2uy1_A Cleavage stimulation fa 98.0 0.0019 6.5E-08 54.1 19.7 196 14-241 210-412 (493)
190 2l6j_A TPR repeat-containing p 97.9 2.2E-05 7.4E-10 51.1 6.3 88 49-147 2-96 (111)
191 3dss_A Geranylgeranyl transfer 97.9 0.0024 8.1E-08 50.5 18.9 204 15-241 62-303 (331)
192 3dra_A Protein farnesyltransfe 97.9 0.0034 1.2E-07 49.1 19.1 184 30-240 46-248 (306)
193 2kat_A Uncharacterized protein 97.8 0.00026 8.9E-09 46.4 9.9 80 68-162 2-82 (115)
194 2kat_A Uncharacterized protein 97.8 0.00013 4.3E-09 48.0 7.9 79 35-121 3-81 (115)
195 1na3_A Designed protein CTPR2; 97.8 0.00034 1.2E-08 43.4 9.6 82 16-105 8-89 (91)
196 2hr2_A Hypothetical protein; a 97.8 0.0008 2.7E-08 47.1 11.9 97 18-121 12-130 (159)
197 3dss_A Geranylgeranyl transfer 97.7 0.0097 3.3E-07 47.0 18.5 202 16-244 25-269 (331)
198 3ma5_A Tetratricopeptide repea 97.6 0.00031 1.1E-08 45.0 7.8 67 14-80 4-70 (100)
199 1na3_A Designed protein CTPR2; 97.6 0.0013 4.4E-08 40.6 10.6 82 92-186 8-90 (91)
200 3q7a_A Farnesyltransferase alp 97.6 0.013 4.4E-07 46.6 18.4 177 26-229 63-258 (349)
201 3qwp_A SET and MYND domain-con 97.6 0.0012 4.2E-08 54.2 12.1 102 57-162 293-400 (429)
202 3qww_A SET and MYND domain-con 97.5 0.00022 7.5E-09 58.7 7.5 91 30-121 311-410 (433)
203 3qww_A SET and MYND domain-con 97.5 0.00043 1.5E-08 57.0 9.2 96 63-162 310-411 (433)
204 3ma5_A Tetratricopeptide repea 97.5 0.00038 1.3E-08 44.6 7.2 66 48-121 4-69 (100)
205 3qwp_A SET and MYND domain-con 97.5 0.00055 1.9E-08 56.3 9.5 99 22-121 292-399 (429)
206 1zu2_A Mitochondrial import re 97.5 0.00044 1.5E-08 48.4 7.1 99 28-138 13-133 (158)
207 1dce_A Protein (RAB geranylger 97.4 0.006 2.1E-07 52.0 15.4 186 18-230 26-243 (567)
208 1klx_A Cysteine rich protein B 97.4 0.0071 2.4E-07 41.1 12.8 110 30-162 8-126 (138)
209 1dce_A Protein (RAB geranylger 97.3 0.023 7.8E-07 48.5 17.8 151 65-243 43-222 (567)
210 1klx_A Cysteine rich protein B 97.3 0.0056 1.9E-07 41.7 11.1 111 107-243 9-127 (138)
211 3mkq_A Coatomer beta'-subunit; 97.2 0.0013 4.3E-08 58.2 9.1 84 92-200 680-763 (814)
212 1zu2_A Mitochondrial import re 97.2 0.0012 4.2E-08 46.1 6.6 99 62-182 13-133 (158)
213 3mkq_A Coatomer beta'-subunit; 97.1 0.063 2.2E-06 47.3 18.7 155 25-239 607-762 (814)
214 3ly7_A Transcriptional activat 97.1 0.016 5.3E-07 46.3 13.1 147 11-177 188-347 (372)
215 2kc7_A BFR218_protein; tetratr 96.8 0.0056 1.9E-07 38.5 7.0 58 23-80 6-64 (99)
216 2kc7_A BFR218_protein; tetratr 96.7 0.0048 1.6E-07 38.8 6.4 57 99-162 6-64 (99)
217 2uy1_A Cleavage stimulation fa 96.7 0.066 2.3E-06 44.8 14.5 126 17-162 286-413 (493)
218 3ly7_A Transcriptional activat 96.6 0.051 1.8E-06 43.4 12.7 138 46-203 189-340 (372)
219 3mkq_B Coatomer subunit alpha; 96.5 0.043 1.5E-06 38.9 10.4 47 104-161 16-62 (177)
220 2v5f_A Prolyl 4-hydroxylase su 96.4 0.038 1.3E-06 35.4 9.0 76 49-128 3-78 (104)
221 3bee_A Putative YFRE protein; 96.3 0.026 9E-07 35.5 7.7 67 14-80 3-72 (93)
222 1pc2_A Mitochondria fission pr 96.3 0.049 1.7E-06 37.7 9.2 85 33-128 14-103 (152)
223 1pc2_A Mitochondria fission pr 96.2 0.049 1.7E-06 37.6 8.8 84 152-245 17-103 (152)
224 3bee_A Putative YFRE protein; 96.1 0.095 3.2E-06 32.8 9.5 66 90-162 3-72 (93)
225 2v5f_A Prolyl 4-hydroxylase su 95.7 0.11 3.9E-06 33.0 8.7 67 14-80 2-75 (104)
226 3u64_A Protein TP_0956; tetrat 95.6 0.18 6.2E-06 38.8 10.7 79 68-162 180-269 (301)
227 3mkq_B Coatomer subunit alpha; 95.6 0.39 1.3E-05 34.0 14.4 131 24-200 12-142 (177)
228 1nzn_A CGI-135 protein, fissio 95.1 0.41 1.4E-05 31.8 11.0 84 152-245 20-106 (126)
229 1wy6_A Hypothetical protein ST 95.0 0.5 1.7E-05 32.0 11.6 62 94-161 92-153 (172)
230 1v54_E Cytochrome C oxidase po 94.9 0.14 4.8E-06 32.4 6.7 51 9-59 37-87 (109)
231 1wy6_A Hypothetical protein ST 94.6 0.66 2.3E-05 31.4 14.4 147 54-244 8-156 (172)
232 1v54_E Cytochrome C oxidase po 94.5 0.51 1.7E-05 29.9 10.5 72 100-182 16-88 (109)
233 3txn_A 26S proteasome regulato 94.0 1.8 6.3E-05 34.9 13.3 101 134-238 104-206 (394)
234 3u64_A Protein TP_0956; tetrat 93.8 1 3.4E-05 34.8 10.8 121 5-136 140-284 (301)
235 2ff4_A Probable regulatory pro 93.8 0.36 1.2E-05 38.9 9.0 112 13-132 108-248 (388)
236 1nzn_A CGI-135 protein, fissio 93.5 0.85 2.9E-05 30.3 8.7 93 24-128 8-106 (126)
237 2ff4_A Probable regulatory pro 93.4 0.48 1.7E-05 38.2 9.1 75 19-95 173-247 (388)
238 4b4t_P 26S proteasome regulato 93.4 2.8 9.5E-05 34.4 17.5 198 31-241 30-246 (445)
239 2y69_E Cytochrome C oxidase su 93.2 0.4 1.4E-05 32.2 6.7 50 10-59 81-130 (152)
240 2y69_E Cytochrome C oxidase su 93.2 1.2 4.2E-05 29.9 10.5 68 104-182 63-131 (152)
241 4h7y_A Dual specificity protei 92.7 1.6 5.6E-05 30.0 10.8 116 48-183 10-138 (161)
242 4gns_B Protein CSD3, chitin bi 92.6 1.1 3.8E-05 39.4 10.6 126 55-200 252-398 (754)
243 4gns_B Protein CSD3, chitin bi 92.6 1.9 6.4E-05 38.0 12.0 129 22-159 253-397 (754)
244 4b4t_R RPN7, 26S proteasome re 91.2 1.6 5.6E-05 35.6 9.7 101 53-162 133-237 (429)
245 4fhn_B Nucleoporin NUP120; pro 90.2 9 0.00031 35.6 14.6 198 22-240 817-1048(1139)
246 4b4t_R RPN7, 26S proteasome re 89.0 1.8 6.3E-05 35.3 8.3 104 130-240 132-235 (429)
247 4fhn_B Nucleoporin NUP120; pro 88.4 16 0.00055 34.0 15.2 150 56-233 817-991 (1139)
248 4b4t_P 26S proteasome regulato 88.1 9.7 0.00033 31.2 19.1 172 19-202 139-324 (445)
249 4h7y_A Dual specificity protei 87.0 5.7 0.00019 27.3 11.9 114 14-137 10-136 (161)
250 3ffl_A Anaphase-promoting comp 85.9 6.1 0.00021 27.5 8.1 69 12-80 13-92 (167)
251 1zbp_A Hypothetical protein VP 84.0 4.9 0.00017 30.5 7.5 118 25-162 5-129 (273)
252 3o48_A Mitochondria fission 1 83.3 6.5 0.00022 26.3 7.0 71 170-245 37-110 (134)
253 3ffl_A Anaphase-promoting comp 82.6 6.2 0.00021 27.5 7.0 77 168-244 13-94 (167)
254 4ady_A RPN2, 26S proteasome re 82.5 29 0.00098 31.6 13.8 196 27-240 384-587 (963)
255 3txn_A 26S proteasome regulato 82.5 18 0.00061 29.2 11.8 143 94-240 20-166 (394)
256 1zbp_A Hypothetical protein VP 77.5 13 0.00045 28.2 7.8 122 101-242 5-129 (273)
257 2zu6_B Programmed cell death p 77.4 23 0.00078 27.4 10.2 64 174-243 167-232 (307)
258 3lvg_A Clathrin heavy chain 1; 75.7 0.019 6.6E-07 47.5 -8.4 80 52-147 55-134 (624)
259 2zu6_B Programmed cell death p 74.5 14 0.00049 28.5 7.7 25 20-44 6-30 (307)
260 2p58_C Putative type III secre 70.6 17 0.00057 23.1 5.7 62 24-98 47-108 (116)
261 3o48_A Mitochondria fission 1 70.4 21 0.00072 23.8 10.2 75 124-204 35-109 (134)
262 3eu9_A Huntingtin-interacting 69.8 6.7 0.00023 28.2 4.8 58 179-243 180-237 (240)
263 2uwj_G Type III export protein 66.8 15 0.00051 23.2 4.9 62 25-99 47-108 (115)
264 2ion_A PDCD4, programmed cell 66.4 28 0.00096 23.7 8.2 69 54-131 12-82 (152)
265 3ltm_A Alpha-REP4; protein eng 65.7 32 0.0011 24.2 17.5 158 9-199 25-182 (211)
266 3esl_A Checkpoint serine/threo 65.6 35 0.0012 24.6 9.3 75 88-173 72-150 (202)
267 2d2s_A Exocyst complex compone 65.1 39 0.0013 24.9 9.1 90 22-121 23-119 (235)
268 3eiq_C Programmed cell death p 64.6 51 0.0018 26.1 11.5 64 174-243 218-283 (358)
269 3eiq_C Programmed cell death p 64.0 53 0.0018 26.0 11.4 171 54-240 57-244 (358)
270 3ltj_A Alpharep-4; protein eng 62.4 37 0.0013 23.7 17.1 161 6-199 17-177 (201)
271 2nsz_A Programmed cell death p 62.3 30 0.001 22.7 9.6 69 54-131 10-80 (129)
272 1k1a_A B-cell lymphoma 3-encod 61.5 26 0.0009 25.0 6.7 151 23-198 12-172 (241)
273 3lvg_A Clathrin heavy chain 1; 60.0 0.05 1.7E-06 45.1 -9.0 82 94-193 55-136 (624)
274 2ion_A PDCD4, programmed cell 58.6 40 0.0014 22.9 7.9 62 19-80 11-74 (152)
275 2qx5_A Nucleoporin NIC96; mRNA 58.4 92 0.0032 27.0 10.8 44 19-63 155-198 (661)
276 1wdy_A 2-5A-dependent ribonucl 57.2 49 0.0017 24.2 7.7 85 100-198 152-241 (285)
277 4aez_C MAD3, mitotic spindle c 56.9 35 0.0012 25.0 6.3 72 89-173 113-185 (223)
278 3kae_A CDC27, possible protein 54.7 52 0.0018 23.3 6.4 86 139-239 43-140 (242)
279 1y8m_A FIS1; mitochondria, unk 54.4 47 0.0016 22.4 11.4 72 126-203 36-107 (144)
280 3ltm_A Alpha-REP4; protein eng 54.0 54 0.0018 23.0 17.4 126 13-162 60-185 (211)
281 3f3f_C Nucleoporin NUP85; stru 53.8 27 0.00091 29.6 5.8 62 8-70 507-568 (570)
282 3bu8_A Telomeric repeat-bindin 52.6 65 0.0022 23.5 7.0 48 33-80 88-143 (235)
283 2keb_A DNA polymerase subunit 51.9 41 0.0014 21.0 5.8 34 110-144 26-59 (101)
284 4ady_A RPN2, 26S proteasome re 51.3 1.5E+02 0.005 27.2 19.6 154 29-202 502-658 (963)
285 1ug3_A EIF4GI, eukaryotic prot 50.4 76 0.0026 24.8 7.9 37 173-209 141-177 (339)
286 1s6c_A KV4 potassium channel-i 50.0 57 0.002 22.1 12.8 134 91-239 36-182 (183)
287 2jul_A Calsenilin; EF-hand, ca 49.6 74 0.0025 23.3 12.4 135 90-239 108-255 (256)
288 1y8m_A FIS1; mitochondria, unk 48.6 60 0.002 21.9 9.2 68 90-162 36-106 (144)
289 1mzb_A Ferric uptake regulatio 48.1 54 0.0018 21.6 5.8 62 6-68 7-70 (136)
290 2nsz_A Programmed cell death p 47.5 57 0.002 21.4 9.3 62 19-80 9-72 (129)
291 4aez_C MAD3, mitotic spindle c 47.3 53 0.0018 24.1 5.9 84 153-243 97-180 (223)
292 4b4t_O 26S proteasome regulato 46.6 1.1E+02 0.0038 24.4 8.8 90 24-115 83-191 (393)
293 2o03_A Probable zinc uptake re 46.5 59 0.002 21.2 5.9 47 56-109 15-61 (131)
294 2kz2_A Calmodulin, CAM; TR2C, 46.2 46 0.0016 20.0 6.7 72 168-243 7-78 (94)
295 3esl_A Checkpoint serine/threo 46.0 81 0.0028 22.7 9.4 54 186-243 92-145 (202)
296 3ljn_A Hypothetical protein; a 45.7 74 0.0025 24.5 7.3 92 14-121 15-109 (364)
297 4a1g_A Mitotic checkpoint seri 45.7 69 0.0024 21.8 9.5 72 89-173 64-136 (152)
298 4b4t_S RPN3, 26S proteasome re 45.1 1.4E+02 0.0047 25.1 9.4 67 14-80 228-299 (523)
299 2dzn_A Probable 26S proteasome 44.7 25 0.00087 24.9 4.1 177 23-236 5-194 (228)
300 2yru_A Steroid receptor RNA ac 44.0 49 0.0017 21.5 4.8 42 73-121 48-89 (118)
301 3mwm_A ZUR, putative metal upt 43.9 49 0.0017 21.9 5.1 48 55-109 17-64 (139)
302 2w57_A Ferric uptake regulatio 43.8 58 0.002 21.9 5.5 64 5-69 5-70 (150)
303 3aji_A 26S proteasome non-ATPa 43.6 46 0.0016 23.5 5.4 53 23-80 9-62 (231)
304 2o03_A Probable zinc uptake re 43.4 66 0.0023 21.0 5.6 49 134-191 15-63 (131)
305 3mwm_A ZUR, putative metal upt 42.5 57 0.0019 21.6 5.2 59 123-191 8-66 (139)
306 4ds7_A Calmodulin, CAM; protei 41.4 68 0.0023 20.5 7.9 20 190-209 84-103 (147)
307 3jxi_A Vanilloid receptor-rela 41.3 75 0.0026 23.0 6.4 124 59-197 10-161 (260)
308 3eyy_A Putative iron uptake re 40.6 79 0.0027 21.1 6.8 63 117-191 8-70 (145)
309 2jnf_A Troponin C; stretch act 40.4 75 0.0026 20.7 8.1 49 188-240 89-137 (158)
310 2mys_C Myosin; muscle protein, 40.2 72 0.0025 20.5 10.6 22 189-210 84-105 (149)
311 1u60_A Probable glutaminase YB 39.8 1.3E+02 0.0044 23.3 7.9 33 108-143 184-216 (310)
312 3eyy_A Putative iron uptake re 39.7 82 0.0028 21.0 6.1 61 6-68 8-69 (145)
313 1ug3_A EIF4GI, eukaryotic prot 39.5 58 0.002 25.5 5.6 96 95-200 13-112 (339)
314 4b4t_O 26S proteasome regulato 39.3 1.3E+02 0.0044 24.0 7.7 96 135-234 82-190 (393)
315 2fe3_A Peroxide operon regulat 39.2 84 0.0029 20.9 7.7 64 117-191 11-74 (145)
316 2ijq_A Hypothetical protein; s 38.9 94 0.0032 21.4 8.5 62 95-162 35-104 (161)
317 2xig_A Ferric uptake regulatio 38.7 88 0.003 21.0 8.3 65 116-191 15-79 (150)
318 1k1a_A B-cell lymphoma 3-encod 38.6 91 0.0031 22.0 6.4 28 100-128 13-40 (241)
319 3ygs_P Procaspase 9; apoptosis 38.6 67 0.0023 19.8 4.8 40 187-235 51-90 (97)
320 2fe3_A Peroxide operon regulat 38.5 86 0.0029 20.9 5.7 60 42-109 12-72 (145)
321 1mzb_A Ferric uptake regulatio 38.5 82 0.0028 20.6 7.4 63 118-191 8-71 (136)
322 2w57_A Ferric uptake regulatio 38.3 89 0.003 21.0 7.3 64 117-191 6-70 (150)
323 3kea_A K1L; tropism, ANK repea 37.7 29 0.00098 26.1 3.5 10 138-147 167-176 (285)
324 3ltj_A Alpharep-4; protein eng 37.2 1E+02 0.0034 21.3 17.6 142 13-186 55-196 (201)
325 1qsa_A Protein (soluble lytic 37.1 2E+02 0.0069 24.7 20.6 208 16-241 101-347 (618)
326 1qsa_A Protein (soluble lytic 37.1 2E+02 0.0069 24.7 14.6 117 31-162 228-348 (618)
327 3m6y_A 4-hydroxy-2-oxoglutarat 36.9 12 0.00042 27.8 1.2 91 67-162 170-270 (275)
328 3fwb_A Cell division control p 36.2 89 0.003 20.4 7.8 19 190-208 96-114 (161)
329 1top_A Troponin C; contractIle 36.2 90 0.0031 20.4 6.0 18 191-208 97-114 (162)
330 1wdy_A 2-5A-dependent ribonucl 35.8 1.2E+02 0.0042 21.9 8.7 146 21-198 6-170 (285)
331 3m0z_A Putative aldolase; MCSG 35.8 11 0.00039 27.6 0.9 91 67-162 147-247 (249)
332 2fu4_A Ferric uptake regulatio 35.7 66 0.0023 18.7 7.3 63 117-190 6-69 (83)
333 4a1g_A Mitotic checkpoint seri 35.7 1E+02 0.0035 21.0 8.9 50 190-243 82-131 (152)
334 4ets_A Ferric uptake regulatio 35.7 91 0.0031 21.3 5.5 56 9-65 25-83 (162)
335 2b7e_A PRE-mRNA processing pro 35.6 59 0.002 18.1 3.6 33 152-189 5-38 (59)
336 4gq2_M Nucleoporin NUP120; bet 34.6 2.3E+02 0.0077 25.8 9.3 112 99-227 816-950 (950)
337 1k87_A PUTA, proline dehydroge 34.1 2E+02 0.0068 25.1 8.3 128 96-244 148-280 (669)
338 3r88_A Anthranilate phosphorib 33.8 1.8E+02 0.0062 23.2 7.6 65 49-121 21-87 (377)
339 1dtl_A Cardiac troponin C; hel 33.1 1E+02 0.0035 20.1 6.1 20 189-208 94-113 (161)
340 3r88_A Anthranilate phosphorib 33.0 1.9E+02 0.0064 23.1 8.5 68 15-82 21-90 (377)
341 3f3f_C Nucleoporin NUP85; stru 32.4 2E+02 0.0067 24.5 7.8 26 132-161 519-544 (570)
342 3bqo_A Telomeric repeat-bindin 32.4 1.4E+02 0.0048 21.5 8.6 51 190-241 95-145 (211)
343 1rw2_A ATP-dependent DNA helic 31.9 52 0.0018 22.5 3.6 34 107-141 72-106 (152)
344 3m0z_A Putative aldolase; MCSG 31.5 55 0.0019 24.1 3.8 83 33-121 147-246 (249)
345 2wpv_A GET4, UPF0363 protein Y 31.4 1.8E+02 0.0062 22.5 14.3 162 53-241 35-216 (312)
346 2wvi_A Mitotic checkpoint seri 31.2 1.3E+02 0.0044 20.8 9.4 74 88-174 58-132 (164)
347 3m6y_A 4-hydroxy-2-oxoglutarat 30.8 61 0.0021 24.1 4.0 83 33-121 170-269 (275)
348 1oai_A Nuclear RNA export fact 30.7 35 0.0012 19.0 2.2 25 105-129 32-56 (59)
349 2rfa_A Transient receptor pote 30.5 1.3E+02 0.0046 21.1 6.1 156 23-199 40-220 (232)
350 4b4t_S RPN3, 26S proteasome re 30.4 1.7E+02 0.0057 24.6 7.0 67 173-241 231-298 (523)
351 3qrx_A Centrin; calcium-bindin 29.4 1.2E+02 0.0042 19.9 8.4 18 191-208 102-119 (169)
352 4ets_A Ferric uptake regulatio 28.6 1E+02 0.0035 21.0 4.8 58 88-147 28-87 (162)
353 2wvi_A Mitotic checkpoint seri 28.5 1.5E+02 0.005 20.5 8.3 49 190-242 77-125 (164)
354 2ijq_A Hypothetical protein; s 28.2 1.5E+02 0.005 20.4 7.8 54 27-80 42-104 (161)
355 3k1s_A PTS system, cellobiose- 27.6 1.2E+02 0.0042 19.3 6.6 61 183-243 32-109 (109)
356 1exr_A Calmodulin; high resolu 27.0 1.3E+02 0.0044 19.4 9.3 18 191-208 84-101 (148)
357 1bd8_A P19INK4D CDK4/6 inhibit 26.4 37 0.0013 22.3 2.2 15 184-198 109-123 (156)
358 1ixm_A SPO0B, protein (sporula 25.7 64 0.0022 22.9 3.4 22 219-240 38-59 (192)
359 2fv2_A RCD1 required for cell 25.6 2.2E+02 0.0074 21.5 7.6 58 137-202 181-238 (268)
360 4fke_A Aminopeptidase N; zinc 25.4 3.8E+02 0.013 24.2 20.3 149 21-190 690-848 (909)
361 3qye_A TBC1 domain family memb 25.2 1.3E+02 0.0046 23.1 5.5 77 114-200 209-289 (331)
362 2bn5_A PSI; nuclear protein, s 25.1 63 0.0022 15.5 2.1 23 219-241 8-30 (33)
363 3sjs_A URE3-BP sequence specif 25.1 1.9E+02 0.0063 20.5 7.9 58 171-239 134-191 (220)
364 3e3r_A Calcyphosin, calcyphosi 25.0 1.4E+02 0.0048 20.4 5.3 19 190-208 152-171 (204)
365 2f2o_A Calmodulin fused with c 24.9 1.6E+02 0.0054 19.6 9.1 44 175-225 102-148 (179)
366 4g8k_A 2-5A-dependent ribonucl 24.9 1.4E+02 0.0048 22.6 5.6 143 25-198 173-323 (337)
367 2ko4_A Mediator of RNA polymer 24.4 84 0.0029 18.7 3.1 34 166-199 29-62 (81)
368 2jp7_A MRNA export factor MEX6 24.3 43 0.0015 18.5 1.8 22 30-51 32-53 (57)
369 2bl0_C Myosin regulatory light 23.9 1.4E+02 0.0049 18.8 9.2 47 187-240 76-125 (142)
370 2bl0_B Myosin regulatory light 23.9 1E+02 0.0035 19.6 4.1 11 190-200 112-122 (145)
371 3qil_A Clathrin heavy chain 1; 23.6 54 0.0019 21.4 2.4 53 19-73 34-86 (125)
372 2wpv_A GET4, UPF0363 protein Y 23.4 2.6E+02 0.0088 21.6 20.5 83 62-156 64-157 (312)
373 3lpz_A GET4 (YOR164C homolog); 23.1 2.7E+02 0.0093 21.8 14.4 91 103-197 65-160 (336)
374 2rg8_A Programmed cell death p 22.9 1.9E+02 0.0064 19.8 7.1 24 55-78 14-37 (165)
375 2obh_A Centrin-2; DNA repair c 22.8 1.6E+02 0.0053 18.9 6.7 18 191-208 80-97 (143)
376 4gq2_M Nucleoporin NUP120; bet 22.6 4.4E+02 0.015 24.0 12.2 115 23-143 816-950 (950)
377 3qye_A TBC1 domain family memb 22.6 2.6E+02 0.009 21.4 7.2 38 88-126 218-255 (331)
378 3u0k_A Rcamp; fluorescent prot 22.4 3.2E+02 0.011 22.3 8.7 49 190-242 375-423 (440)
379 1wgl_A TOLL-interacting protei 22.3 1.1E+02 0.0038 16.9 4.5 35 91-128 23-57 (59)
380 2d2s_A Exocyst complex compone 22.2 2.4E+02 0.008 20.7 8.7 91 135-240 24-118 (235)
381 3lxu_X Tripeptidyl-peptidase 2 22.2 4.1E+02 0.014 25.4 8.6 36 105-143 1296-1331(1354)
382 3rjo_A Endoplasmic reticulum a 21.8 3.1E+02 0.011 21.9 17.1 154 19-199 199-370 (419)
383 1bpo_A Protein (clathrin); cla 21.6 3.5E+02 0.012 22.5 9.8 99 88-198 356-454 (494)
384 3lpz_A GET4 (YOR164C homolog); 21.2 3E+02 0.01 21.5 21.6 168 18-240 36-214 (336)
385 2i7a_A Calpain 13; calcium-dep 21.1 2E+02 0.0069 19.5 7.6 11 190-200 115-125 (174)
386 2qq8_A TBC1 domain family memb 20.9 1.4E+02 0.0046 23.2 4.7 77 114-200 214-293 (334)
387 1q2z_A ATP-dependent DNA helic 20.7 55 0.0019 21.2 2.0 34 107-141 41-75 (120)
388 1bpo_A Protein (clathrin); cla 20.4 3.7E+02 0.013 22.3 13.3 73 8-80 352-424 (494)
389 3lxu_X Tripeptidyl-peptidase 2 20.4 4E+02 0.014 25.5 8.1 81 95-188 1236-1332(1354)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.5e-37 Score=258.78 Aligned_cols=199 Identities=12% Similarity=0.147 Sum_probs=176.1
Q ss_pred HHHHhcccCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCC---------cchHHHHH
Q 043380 6 EIVNREHWKLNT-IVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKK---------LDVTMPFN 74 (246)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~---------~~~a~~~~ 74 (246)
..+++.+..+++ .+++.+|++|++.|++++|+++|++|. +|+.||..|||+||.+|++.+. ++.|.++|
T Consensus 14 ~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf 93 (501)
T 4g26_A 14 RKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93 (501)
T ss_dssp ----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH
Confidence 345555655444 468999999999999999999999998 8999999999999999998765 57799999
Q ss_pred HHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHH
Q 043380 75 EQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALC 154 (246)
Q Consensus 75 ~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~ 154 (246)
++|... |+.||..|||+||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++ |.+
T Consensus 94 ~~M~~~-------G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~----A~~ 161 (501)
T 4g26_A 94 KQMIVD-------KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADK----AYE 161 (501)
T ss_dssp HHHHHT-------TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHH----HHH
T ss_pred HHHHHh-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHH----HHH
Confidence 999998 8999999999999999999999999999999999 9999999999999999999999999 999
Q ss_pred HHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc
Q 043380 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND 226 (246)
Q Consensus 155 ~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 226 (246)
+|++|.+. |+.||..||++||.+|++.|++++|.++|++|...+ ..|+.. ||+.++..|...
T Consensus 162 l~~~M~~~-----G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g---~~ps~~--T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVES-----EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV---RQVSKS--TFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHT-----TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SSBCHH--HHHHHHHHHHSH
T ss_pred HHHHHHhc-----CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC---CCcCHH--HHHHHHHHHhcC
Confidence 99999999 999999999999999999999999999999998654 444433 999999999864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.1e-34 Score=240.18 Aligned_cols=169 Identities=11% Similarity=0.196 Sum_probs=162.1
Q ss_pred hhhhHHHHhcccCcCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHH
Q 043380 2 FEENEIVNREHWKLNTIVMNAVIEASREAQR---------IDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTM 71 (246)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~ 71 (246)
++.+++|++.|++||..+||+||.+|++.+. +++|.++|++|. .|+.||..|||+||++|++.|++++|.
T Consensus 46 ~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~ 125 (501)
T 4g26_A 46 LRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAF 125 (501)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 4578999999999999999999999998665 789999999998 899999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhH
Q 043380 72 PFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLY 151 (246)
Q Consensus 72 ~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~ 151 (246)
++|++|.+. |+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..||++||.+|++.|++++
T Consensus 126 ~l~~~M~~~-------g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~---- 193 (501)
T 4g26_A 126 DMVKQMKAF-------GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMDTKNADK---- 193 (501)
T ss_dssp HHHHHHHHT-------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHH----
T ss_pred HHHHHHHHc-------CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhCCCHHH----
Confidence 999999998 8999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcC
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g 187 (246)
|.+++++|.+. +..|+..||+.++..|+..+
T Consensus 194 A~~ll~~Mr~~-----g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 194 VYKTLQRLRDL-----VRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHH-----TSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHh-----CCCcCHHHHHHHHHHHhcCc
Confidence 99999999999 99999999999999998754
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=183.32 Aligned_cols=161 Identities=12% Similarity=0.139 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
.-..|||+||++||+.|++++|.++|.+|.+.+ ..|+.||.+|||+||.+||+.|++++|.++|++|.+ .|+.||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~----~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PD 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR----QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH----HHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----hcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCc
Confidence 345789999999999999999999998876420 017899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhcCCh-hhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCC
Q 043380 129 RSTFTAMVDALLYSGSI-KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (246)
..|||++|.++|+.|+. ++ |.++|++|.+. |+.||..+|++++.++.+.+-++.+.++.-.+....
T Consensus 200 vvTYntLI~glcK~G~~~e~----A~~Ll~EM~~k-----G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~---- 266 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGT----IERCLEQMSQE-----GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP---- 266 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHH----HHHHHHHHHHH-----TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCC----
T ss_pred HHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHc-----CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCC----
Confidence 99999999999999985 78 99999999999 999999999999988887766665555544443321
Q ss_pred CchhhhHHHHHHHHHHHhcC
Q 043380 208 SPEVQEEAGHLLMEAALNDG 227 (246)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g 227 (246)
++....++-..|.+.|.+.+
T Consensus 267 ~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 267 QLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCCCCTTTHHHHCCCS
T ss_pred CCcccccchHHHHHHHccCC
Confidence 11111124455666676655
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=182.70 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=127.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCC
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE----KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 89 (246)
.--..|||+||++||+.|++++|.++|++|. +|+.||++|||+||++||+.|++++|.++|++|.+. |+
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-------G~ 196 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-------GL 196 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CC
Confidence 3345689999999999999999999998874 489999999999999999999999999999999998 89
Q ss_pred CccHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 90 HPDIFTYATLLMGFRHAKD-LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
.||.+|||+||.++++.|+ .++|.++|++|.+ .|+.||..+|++++.++.+.+ +++..+.+. |+
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~--------vL~~Vrkv~------P~ 261 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRAT--------VLKAVHKVK------PT 261 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHH--------HHHHHGGGC------CC
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHH--------HHHHHHHhC------cc
Confidence 9999999999999999998 5789999999999 999999999999997655543 333334441 24
Q ss_pred CCcc------hhhHHHHHHHHHhcC
Q 043380 169 LWPK------PHLYVSMMHELAARV 187 (246)
Q Consensus 169 ~~p~------~~~~~~li~~~~~~g 187 (246)
+.|+ ..+...|.+.|.+.+
T Consensus 262 f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 262 FSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred cCCCCCCcccccchHHHHHHHccCC
Confidence 5544 455566667777655
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.1e-20 Score=161.82 Aligned_cols=202 Identities=7% Similarity=0.030 Sum_probs=180.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
++++.+|+.++.+|.+.|++++|.++|+++....+.+..+|+.++.+|.+.|++++|..+++++.+. .+.+.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~ 373 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--------HPEKA 373 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CcccH
Confidence 5899999999999999999999999999987434668899999999999999999999999999975 35678
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
.+|+.+..+|.+.|++++|.++|+++.+ ..|+ ..+|+.++..|.+.|++++ |.++|+++.+. ...+
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~------~~~~ 440 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSST---MDPQFGPAWIGFAHSFAIEGEHDQ----AISAYTTAARL------FQGT 440 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHT------TTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------Cccc
Confidence 8999999999999999999999999988 3454 8899999999999999999 99999999885 3457
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
..+|..++.+|.+.|++++|.++|+++....+. +. .+|+.++..|.+.|++++|.++|+++.+.
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY----DP--LLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----Ch--HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999998754322 22 27999999999999999999999999775
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=4.7e-20 Score=158.02 Aligned_cols=210 Identities=12% Similarity=0.017 Sum_probs=132.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.++.+|+.++..|.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|.++|+++.+. .+.+.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~ 441 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--------FQGTH 441 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TTTCS
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cccch
Confidence 3456666666677777777777777776665323445666777777777777777777777776654 23355
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc-
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK- 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~- 172 (246)
.+|+.+..+|.+.|++++|.++|+++.+ . .+.+..+|+.++..|.+.|++++ |.++|+++.+.... .+..|+
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~-~~~~p~~ 514 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYA-L-FQYDPLLLNELGVVAFNKSDMQT----AINHFQNALLLVKK-TQSNEKP 514 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHH-SCCCSGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhCCHHH----HHHHHHHHHHhhhc-cccchhh
Confidence 6667777777777777777777777666 2 12236667777777777777777 77777766554110 023555
Q ss_pred -hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 173 -PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 173 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
..+|..+..+|.+.|++++|.++|+++...++ ... .+|..+..+|.+.|++++|.++|+++.+..+
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLST----NDA--NVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS----CCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 56677777777777777777777777765432 111 1566777777777777777777776665443
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.79 E-value=1.9e-16 Score=128.87 Aligned_cols=202 Identities=11% Similarity=-0.010 Sum_probs=163.1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DI 93 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~ 93 (246)
-+..+|+.+..++.+.|++++|...|+++..-.+.+...|..+...+...|++++|...|.+.... .| +.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~ 237 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHA 237 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCH
Confidence 346677777777777777777777777765333445666777777777777778887777777764 34 57
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
.++..+..+|...|++++|...|+++.+ ..|+ ..+|..+...+...|++++ |...|+++.+. .+.+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~------~p~~ 304 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAE----AEDCYNTALRL------CPTH 304 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHH----HHHHHHHHHHH------CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhh------Cccc
Confidence 7899999999999999999999999988 4465 7789999999999999999 99999999886 4567
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
..++..+...+...|++++|...++++....+ ... .++..+...|.+.|++++|.+.|+++.+..+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP----EFA--AAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT----TCH--HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 78999999999999999999999999876532 222 2789999999999999999999999876543
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.74 E-value=8.7e-16 Score=124.90 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=111.6
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
.+.++.+|..+..+|.+.|++++|.+.|+++.+-.+.+..+|..+..++...|++++|.+.|.++.+. .|+
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~ 133 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---------NPD 133 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---------CTT
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCC
Confidence 34566777777777777777777777777765322344556777777777777777777777766654 232
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC---
Q 043380 93 -IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP--- 167 (246)
Q Consensus 93 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--- 167 (246)
...+..+...+...|++++|.+.|+++.+ ..|+ ..+|..+...+...|++++ |...|+++.+.+....
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~ 206 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWL----AIHHFEKAVTLDPNFLDAY 206 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHH----HHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCcHHHH
Confidence 23344444445555555555555555544 2232 3444444444444444444 4444444433210000
Q ss_pred ------------------------CCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHH
Q 043380 168 ------------------------GLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEA 222 (246)
Q Consensus 168 ------------------------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 222 (246)
...| +..++..+..+|...|++++|...|+++....+. .+ .+|..+...
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~ 280 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FP----DAYCNLANA 280 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CH----HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CH----HHHHHHHHH
Confidence 0122 2355555666666666666666666665443211 11 145555666
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 043380 223 ALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~ 241 (246)
+.+.|++++|.++|+++.+
T Consensus 281 ~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 6666666666666655544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.74 E-value=5.3e-16 Score=128.31 Aligned_cols=205 Identities=9% Similarity=-0.045 Sum_probs=174.5
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
.+.++..+..+...+.+.|++++|..+|+.+....+.+..+|..+..++...|++++|...|+++.+. -+.+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~ 93 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMDF 93 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCc
Confidence 35677889999999999999999999999987545678999999999999999999999999999986 2345
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH----HHHHHH------------HHHHHhcCChhhhhhHHHHHH
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR----STFTAM------------VDALLYSGSIKVVGLYALCIF 156 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~l------------i~~~~~~~~~~~~~~~a~~~~ 156 (246)
..++..+..+|.+.|++++|...|+++.. ..|+. ..+..+ ...+...|++++ |..+|
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~ 166 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA----AIAFL 166 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH----HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHH
Confidence 78999999999999999999999999988 45663 555555 444899999999 99999
Q ss_pred HHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 157 ~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
+.+.+. .+.+..++..+..+|...|++++|..+|+++....+. .. .+|..+...|...|++++|.+.|
T Consensus 167 ~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 167 DKILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND----NT--EAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HHHHHH------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS----CH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHh------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CH--HHHHHHHHHHHHcCCHHHHHHHH
Confidence 999886 3456788999999999999999999999998754321 11 27999999999999999999999
Q ss_pred HHHHhhcc
Q 043380 237 SNTITRWK 244 (246)
Q Consensus 237 ~~m~~~g~ 244 (246)
+++.+..+
T Consensus 235 ~~~~~~~p 242 (450)
T 2y4t_A 235 RECLKLDQ 242 (450)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 99876543
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=2.9e-15 Score=114.41 Aligned_cols=203 Identities=9% Similarity=-0.074 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
+..|..+...+...|++++|.+.|+.+....+.+...+..+...+...|++++|.+.|+++.+. .+.+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--------DSRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHH
Confidence 6778889999999999999999999886444667889999999999999999999999999986 23467889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
..+...|...|++++|.++++++.. .+..|+ ...+..+...+...|++++ |...|++..+. ...+..+
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~------~~~~~~~ 177 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQ----AKEYFEKSLRL------NRNQPSV 177 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CSCCHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhc------CcccHHH
Confidence 9999999999999999999999987 556665 6778899999999999999 99999999886 2345788
Q ss_pred HHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 176 YVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
+..+...+...|++++|...++......+ .... .+..+...+...|++++|.++++.+.+..+
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQGGG----QNAR--SLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSC----CCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999876432 2222 688899999999999999999999987654
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=4.4e-16 Score=117.02 Aligned_cols=200 Identities=11% Similarity=0.018 Sum_probs=160.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
++++..+..+...+.+.|++++|...|+...+--+.+...+..+...+.+.|++++|...|++..+. -+.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcH
Confidence 5777889999999999999999999999987555678899999999999999999999999999986 23356
Q ss_pred HHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 94 FTYATLLMGFRHA-----------KDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 94 ~~~~~ll~~~~~~-----------~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
..+..+-.++... |++++|...|++..+ +.|+ ...+..+...|...|++++ |...|++..+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~ 146 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDK----AEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHH----HHHHHHHHHh
Confidence 7899999999999 999999999999988 5576 7889999999999999999 9999999999
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 162 RVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 162 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
. . .+...+..+..+|...|++++|...|++.....+.. . .++..+...+...|++++|++.|++...
T Consensus 147 ~-----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~----~--~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 147 L-----E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD----L--DLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp H-----C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----H--HHHHHHHHHHTC----------------
T ss_pred c-----c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----h--HHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8 5 678899999999999999999999999987654321 1 2688899999999999999999987643
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.73 E-value=1.5e-15 Score=125.55 Aligned_cols=204 Identities=12% Similarity=-0.002 Sum_probs=170.5
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
.+.+..+|..+..+|.+.|++++|...|+.+.+..+.+...+..+..+|.+.|++++|.+.|+++.+. .|+
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~ 126 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---------NPS 126 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---------CCC
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCC
Confidence 45678999999999999999999999999987444667889999999999999999999999999985 343
Q ss_pred -H---HHHHHHH------------HHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHH
Q 043380 93 -I---FTYATLL------------MGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCI 155 (246)
Q Consensus 93 -~---~~~~~ll------------~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~ 155 (246)
. ..+..+. ..+...|++++|...|+.+.+ ..| +..++..+...|...|++++ |..+
T Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~----A~~~ 199 (450)
T 2y4t_A 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELRAECFIKEGEPRK----AISD 199 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCGGG----GHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHCCCHHH----HHHH
Confidence 3 5555554 448899999999999999988 334 58889999999999999999 9999
Q ss_pred HHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHH------------HHHH
Q 043380 156 FGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLL------------MEAA 223 (246)
Q Consensus 156 ~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l------------i~~~ 223 (246)
|+.+.+. .+.+..++..+..+|...|++++|...|+++....+.. .. .+..+ ...|
T Consensus 200 ~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~--~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 200 LKAASKL------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH----KR--CFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp HHHHHHH------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh----HH--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999886 24467899999999999999999999999987543221 11 34444 8889
Q ss_pred HhcCChhHHHHHHHHHHhhcc
Q 043380 224 LNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.+.|++++|.++|+++.+..+
T Consensus 268 ~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999877543
No 13
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=5.3e-15 Score=110.64 Aligned_cols=207 Identities=7% Similarity=-0.108 Sum_probs=175.0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.++..|..+...+...|++++|.+.|+......+.+...+..+...+...|++++|.+.++++.+. .+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~ 76 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--------KPDSA 76 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCh
Confidence 3456788899999999999999999999886544667889999999999999999999999999986 24467
Q ss_pred HHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 94 FTYATLLMGFRHA-KDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 94 ~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
.++..+...+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++ |...++...+. .+.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~------~~~ 145 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGL----AEAYLKRSLAA------QPQ 145 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------STT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CCC
Confidence 7899999999999 999999999999988 555565 6788899999999999999 99999999886 233
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
+...+..+..++...|++++|..+++......+. ... ..+..+...+...|+.+.|..+++.+.+..+
T Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV---LQA--DDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---CCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 5788999999999999999999999998754320 111 1577888888999999999999999876544
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=9.5e-16 Score=123.62 Aligned_cols=206 Identities=12% Similarity=0.027 Sum_probs=166.1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.+..+|..+..+|.+.|++++|.+.|++...-.+.+..+|..+..+|...|++++|...|+++.+. .|+.
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~ 166 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ---------NPKY 166 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CHHH
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh---------Cccc
Confidence 4678899999999999999999999999886434667889999999999999999999999999875 3432
Q ss_pred -----------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 94 -----------FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 94 -----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..+..+...+...|++++|..+|+++.....-.++..++..+...|...|++++ |...|++..+.
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~ 242 (365)
T 4eqf_A 167 KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNR----AIDAFNAALTV 242 (365)
T ss_dssp HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH
T ss_pred hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHh
Confidence 233445788999999999999999999822111258899999999999999999 99999999886
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 163 VCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 163 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
.+.+..+|..+..+|...|++++|...|++.....+.. . .+|..+..+|...|++++|.+.|++..+.
T Consensus 243 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 243 ------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF----I--RSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H--HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----h--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34467899999999999999999999999987543221 1 27899999999999999999999998775
Q ss_pred cc
Q 043380 243 WK 244 (246)
Q Consensus 243 g~ 244 (246)
.+
T Consensus 311 ~~ 312 (365)
T 4eqf_A 311 QR 312 (365)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 15
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=2.3e-15 Score=114.15 Aligned_cols=206 Identities=11% Similarity=0.020 Sum_probs=156.7
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
...+...|..+...+.+.|++++|...|++.....+.+...+..+...+...|++++|...|+++.+. .+.+
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 90 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--------DSSA 90 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcc
Confidence 34566778888889999999999999999987655668889999999999999999999999999986 2346
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
...+..+...|...|++++|...+++..+ . .+.+...+..+...+...|++++ |...+++..+. ...+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~------~~~~ 158 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR-A-GMENGDLFYMLGTVLVKLEQPKL----ALPYLQRAVEL------NEND 158 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-TCCSHHHHHHHHHHHHHTSCHHH----HHHHHHHHHHH------CTTC
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHhccHHH----HHHHHHHHHHh------CCcc
Confidence 78899999999999999999999999988 2 22357889999999999999999 99999999886 3346
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
...+..+...+...|++++|...+++.....+. .. .++..+...|...|++++|.+.+++..+..+
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG----HA--DAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT----CH--HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----cH--HHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 788999999999999999999999998754321 11 2788899999999999999999999877554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.6e-14 Score=114.27 Aligned_cols=209 Identities=9% Similarity=-0.063 Sum_probs=171.5
Q ss_pred CcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 14 KLNTIVMNAVIEASREAQ-RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+.++..|..+...+...| ++++|.+.|+......+.+...|..+...+...|++++|...|+++.+. .+.+
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~ 158 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--------MKGC 158 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------TTTC
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cccc
Confidence 446778888899999999 9999999999887544567788999999999999999999999999886 2334
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC---C
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP---G 168 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~ 168 (246)
...+..+...|...|++++|...+++..+ ..|+ ...+..+...+...|++++ |...+++..+...... .
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKT----AEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHTTTSCSCT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHH----HHHHHHHHHHHhhhcccccc
Confidence 56777799999999999999999999988 3344 7889999999999999999 9999999887632111 1
Q ss_pred CCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
...+..++..+..+|...|++++|...+++.....+.. + .++..+...|...|++++|.+.|++..+..
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN--A----STYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--S----HHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc--h----HHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 13345789999999999999999999999987543221 1 278899999999999999999999876644
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=4.1e-15 Score=119.89 Aligned_cols=204 Identities=7% Similarity=-0.017 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
+...|..+...+.+.|++++|.++|+.+....+.+..+|..+...|...|++++|...|+++.+. .+.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHH
Confidence 44558889999999999999999999987545678899999999999999999999999999986 2345789
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-----------RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----------~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 164 (246)
|..+..+|...|++++|...|+++.+ ..|+ ...+..+...+...|++++ |..+|+++.+..
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~~- 207 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIK---QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG----VKELYLEAAHQN- 207 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCHHHHCC-------------------CCHHHHH----HHHHHHHHHHHS-
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHH---hCccchHHHhhhccchHHHHHHHHHHhhhhhHHH----HHHHHHHHHHhC-
Confidence 99999999999999999999999988 3344 2233445889999999999 999999999871
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 165 SNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 165 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.-.++..++..+...|...|++++|...|++.....+. .. .+|..+..+|...|++++|.+.|++..+..+
T Consensus 208 ---p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 208 ---GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE----DY--SLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp ---CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 11125789999999999999999999999998754322 12 2799999999999999999999999887554
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=3.1e-14 Score=114.54 Aligned_cols=202 Identities=12% Similarity=0.018 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
...+..+...+.+.|++++|...|+.+....+.+..+|..+..++...|++++|.+.|+++.+. .+.+..++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~ 135 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTAL 135 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHH
Confidence 3445666777777777777777777765444556667777777777777777777777777765 13356677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCC-----------------------------------------------CCC--
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCN-----------------------------------------------LIL-- 127 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----------------------------------------------~~p-- 127 (246)
..+...|...|++++|...++.+.. .. ..|
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc
Confidence 7777777777777777777766554 11 112
Q ss_pred -CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCC
Q 043380 128 -DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGT 206 (246)
Q Consensus 128 -~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 206 (246)
+..++..+...|...|++++ |...|+..... .+.+..++..+...+...|++++|...+++.....+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 283 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDK----AVDCFTAALSV------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 283 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred ccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 46778888888888999999 99999888875 2334678888888889999999999998887654321
Q ss_pred CCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 207 ISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
.. .++..+...|.+.|++++|.+.|++..+..
T Consensus 284 ---~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 284 ---YI--RSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp ---CH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---cH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 11 268888888999999999999988877644
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.3e-14 Score=108.50 Aligned_cols=204 Identities=14% Similarity=0.056 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD---- 92 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~---- 92 (246)
...|..+...+...|++++|...|+...+.. .+...|..+..++...|++++|.+.+.+..+.. ....|+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-----REMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----cccccchHHH
Confidence 5678889999999999999999999876323 888999999999999999999999999998751 001111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC------------------------CCCC-HHHHHHHHHHHHhcCChhh
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN------------------------LILD-RSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------------------~~p~-~~~~~~li~~~~~~~~~~~ 147 (246)
..+|..+...|...|++++|...|+.... .. ..|+ ...+..+...+...|++++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 57899999999999999999999999887 22 3343 5678889999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcC
Q 043380 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDG 227 (246)
Q Consensus 148 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 227 (246)
|...|+..... .+.+..++..+..+|...|++++|...++......+. .. .+|..+...+...|
T Consensus 158 ----A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~--~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 158 ----AVKAYTEMIKR------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN----FV--RAYIRKATAQIAVK 221 (258)
T ss_dssp ----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH--HHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHhc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH----HH--HHHHHHHHHHHHHh
Confidence 99999999886 3346788999999999999999999999998754322 11 27888999999999
Q ss_pred ChhHHHHHHHHHHhhc
Q 043380 228 QVDLALDKLSNTITRW 243 (246)
Q Consensus 228 ~~~~a~~~~~~m~~~g 243 (246)
++++|.+.++...+..
T Consensus 222 ~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 222 EYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999887654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=3.7e-14 Score=114.06 Aligned_cols=213 Identities=8% Similarity=-0.088 Sum_probs=168.3
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCC-----
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG----- 87 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----- 87 (246)
.+.+..+|..+..++.+.|++++|.+.|+....-.+.+..++..+...+...|++++|.+.|+++....-.....
T Consensus 94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 345778888999999999999999999988764346678889999999999999999998888877642100000
Q ss_pred -----------------------------------CCCc---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-
Q 043380 88 -----------------------------------GFHP---DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD- 128 (246)
Q Consensus 88 -----------------------------------~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~- 128 (246)
...| +..++..+...|...|++++|...|++... ..|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~ 250 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPND 250 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCC
Confidence 0122 477899999999999999999999999988 3454
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCC
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (246)
..+|..+...|...|++++ |...|+...+. .+.+..++..+..+|...|++++|...|++.....+....
T Consensus 251 ~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEE----AVAAYRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 7889999999999999999 99999999886 2345688999999999999999999999987643222111
Q ss_pred ch-----hhhHHHHHHHHHHHhcCChhHHHHHHHH
Q 043380 209 PE-----VQEEAGHLLMEAALNDGQVDLALDKLSN 238 (246)
Q Consensus 209 ~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~ 238 (246)
+. ....+|..+..+|...|++++|..++++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 10 0123799999999999999999998864
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.66 E-value=6.2e-14 Score=110.83 Aligned_cols=210 Identities=8% Similarity=0.002 Sum_probs=159.7
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK-KLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+.+...+..+..++.+.|++++|..+++++....+.+...|..+...+...| ++++|...|++..+. .+.+
T Consensus 53 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~ 124 (330)
T 3hym_B 53 PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTY 124 (330)
T ss_dssp TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTC
T ss_pred CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCcc
Confidence 3444556667778888888888888888876434556778888888888888 888899988888875 2334
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
...|..+...+...|++++|...|++... ..|+ ...+..+...|...|++++ |...++...+. .+.
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~al~~------~~~ 191 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQ---LMKGCHLPMLYIGLEYGLTNNSKL----AERFFSQALSI------APE 191 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCSHHHHHHHHHHHHTTCHHH----HHHHHHHHHTT------CTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHh------CCC
Confidence 66788888888899999999999998887 3344 5667778888899999999 99999988775 334
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCC---CCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMWPDST---GTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
+..++..+...+...|++++|...+++...... ....+.....++..+...|...|++++|.+.+++..+..+
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 568889999999999999999999988763211 1111111122788899999999999999999998876543
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=2e-14 Score=113.59 Aligned_cols=203 Identities=12% Similarity=-0.017 Sum_probs=165.8
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.+...+..+..++.+.|++++|.+.|++.....+.+..++..+...+...|++++|.+.++++.+. .|+.
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------~~~~ 122 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS---------QPQY 122 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------STTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCcc
Confidence 4578889999999999999999999999886444667889999999999999999999999999876 2322
Q ss_pred -HHHHHH--------------HH-HHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHH
Q 043380 94 -FTYATL--------------LM-GFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIF 156 (246)
Q Consensus 94 -~~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~ 156 (246)
..+..+ .. .+...|++++|...++++.+ ..| +...+..+...|...|++++ |...+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~----A~~~~ 195 (327)
T 3cv0_A 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE---MNPNDAQLHASLGVLYNLSNNYDS----AAANL 195 (327)
T ss_dssp TTC--------------------CCTTSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHH----HHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhccHHH----HHHHH
Confidence 222222 22 37788999999999999988 334 58889999999999999999 99999
Q ss_pred HHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 157 ~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
+...+. .+.+..++..+...+...|++++|...+++.....+. .. .++..+...|...|++++|.+.+
T Consensus 196 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 196 RRAVEL------RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG----YV--RVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CH--HHHHHHHHHHHHhccHHHHHHHH
Confidence 999886 2345688999999999999999999999998654321 11 27889999999999999999999
Q ss_pred HHHHhhcc
Q 043380 237 SNTITRWK 244 (246)
Q Consensus 237 ~~m~~~g~ 244 (246)
++..+..+
T Consensus 264 ~~a~~~~~ 271 (327)
T 3cv0_A 264 VRAIYMQV 271 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhCC
Confidence 98876544
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.64 E-value=1.1e-13 Score=110.57 Aligned_cols=202 Identities=8% Similarity=-0.043 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
|+..+..+...+.+.|++++|...|+.+.+..+.+..++..+...+...|++++|...|+++.+. .+-+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchH
Confidence 46678889999999999999999999986544667889999999999999999999999999986 2336688
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---C-HHHHHHH------------HHHHHhcCChhhhhhHHHHHHHHH
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL---D-RSTFTAM------------VDALLYSGSIKVVGLYALCIFGEI 159 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~-~~~~~~l------------i~~~~~~~~~~~~~~~a~~~~~~m 159 (246)
|..+...+...|++++|...|+...+ ..| + ...+..+ ...+...|++++ |..+++..
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~ 146 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA----AITFLDKI 146 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH----HHHHHHHH
Confidence 99999999999999999999999988 556 4 4445444 588999999999 99999999
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 160 VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
.+. .+.+..++..+...+...|++++|...++......+. .. .++..+...+...|++++|.+.++..
T Consensus 147 ~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~--~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 147 LEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD----NT--EAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC----CH--HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 886 3456788999999999999999999999998765422 22 27889999999999999999999988
Q ss_pred Hhhcc
Q 043380 240 ITRWK 244 (246)
Q Consensus 240 ~~~g~ 244 (246)
.+..+
T Consensus 215 ~~~~~ 219 (359)
T 3ieg_A 215 LKLDQ 219 (359)
T ss_dssp HHHCT
T ss_pred HhhCc
Confidence 76543
No 24
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=4.2e-14 Score=109.13 Aligned_cols=206 Identities=7% Similarity=-0.110 Sum_probs=166.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
.+..+|..+..++...|++++|...|++.....+.+..+|..+...+...|++++|.+.|++..+. .+.+..
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~ 112 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNY 112 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccH
Confidence 357889999999999999999999999986444667899999999999999999999999999986 233578
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
.+..+..+|...|++++|...|+.+.+ ..|+.......+..+...|++++ |...++..... ..++..
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~------~~~~~~ 179 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQ----AKEVLKQHFEK------SDKEQW 179 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHHHH------SCCCST
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHH----HHHHHHHHHhc------CCcchH
Confidence 999999999999999999999999988 45665555555566677899999 99999888776 234444
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.+ .+...+...++.++|...+...........+ ....+|..+...|...|++++|.+.|++..+..+
T Consensus 180 ~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 180 GW-NIVEFYLGNISEQTLMERLKADATDNTSLAE--HLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHhcCHHHHHHHHHHHhcccccccc--cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 44 4777888888999999999988754321100 1123788899999999999999999999877554
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=7.5e-14 Score=109.53 Aligned_cols=200 Identities=13% Similarity=0.032 Sum_probs=150.6
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEP-DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
-+|+..++..+...+...++.++|.+.++++. .+..| +...+..+-..+...|++++|.+.+++ +
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~ 127 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------G 127 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------C
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------C
Confidence 45677788888888888888889998888875 44345 455566666888888999998888876 2
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF---TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
.+...+..+...|.+.|++++|...|+.+.+ ..|+.... ..++..+...|++++ |..+|+++.+.
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~l~~a~~~l~~~~~~~~e----A~~~~~~~l~~----- 195 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQD---QDEDATLTQLATAWVSLAAGGEKLQD----AYYIFQEMADK----- 195 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCTTHHHH----HHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhCchHHHH----HHHHHHHHHHh-----
Confidence 4566888888899999999999999999988 34663221 223344445688999 99999999886
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH-HHHHHHHHHhhcc
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL-ALDKLSNTITRWK 244 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~ 244 (246)
.+.+...++.+..++...|++++|...|++....++. ... ++..++..+...|+.++ +.++++++.+..+
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----~~~--~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG----HPE--TLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3457788889999999999999999999987754422 111 67888888888898875 5788888776554
No 26
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.61 E-value=4.2e-13 Score=107.11 Aligned_cols=204 Identities=12% Similarity=-0.013 Sum_probs=167.6
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP- 91 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p- 91 (246)
.+.++..+..+..++...|++++|...|+...+..+.+...|..+...+...|++++|...|++..+. .|
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~ 103 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---------NPS 103 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS---------CCC
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc---------CCc
Confidence 34568899999999999999999999999986434557789999999999999999999999999975 45
Q ss_pred ---cHHHHHHH------------HHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHH
Q 043380 92 ---DIFTYATL------------LMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCI 155 (246)
Q Consensus 92 ---~~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~ 155 (246)
+...+..+ ...+...|++++|..+++.+.+ ..| +...+..+...+...|++++ |...
T Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----A~~~ 176 (359)
T 3ieg_A 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE---VCVWDAELRELRAECFIKEGEPRK----AISD 176 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHCCCHHH----HHHH
Confidence 44455444 5788999999999999999988 334 47889999999999999999 9999
Q ss_pred HHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHH------------HHHHHH
Q 043380 156 FGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGH------------LLMEAA 223 (246)
Q Consensus 156 ~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------~li~~~ 223 (246)
++...+. .+.+..++..+...+...|++++|...++......+... . ++. .+...+
T Consensus 177 ~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~----~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 177 LKAASKL------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK--R----CFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHHHHTT------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--H----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccch--H----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999875 345678899999999999999999999999875432211 1 222 236678
Q ss_pred HhcCChhHHHHHHHHHHhhcc
Q 043380 224 LNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.+.|++++|.+.+++..+..+
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999998876543
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.1e-13 Score=116.01 Aligned_cols=209 Identities=11% Similarity=0.006 Sum_probs=169.6
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
|+...|..+..++...|++++|.+.|+......+.+...+..+...+...|++++|...|++..+. .+.+..
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~ 339 (514)
T 2gw1_A 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIF 339 (514)
T ss_dssp CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHH
Confidence 337888888889999999999999998887545667788999999999999999999999999875 233567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.+..+...|...|++++|...++.+.+ ..| +..++..+...|...|++++ |...++.+.......+...-..
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~~ 412 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKR---KFPEAPEVPNFFAEILTDKNDFDK----ALKQYDLAIELENKLDGIYVGI 412 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHTSSSCSSCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhhhccchHHHHH
Confidence 888999999999999999999999888 334 36788899999999999999 9999999887622111111113
Q ss_pred hhHHHHHHHHHh---cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 174 HLYVSMMHELAA---RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 174 ~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.++..+..++.. .|++++|...++......+. .. .++..+...|.+.|++++|.+.|++..+..+
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPR----SE--QAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT----CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc----cH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 489999999999 99999999999998754322 11 2788899999999999999999999887654
No 28
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.2e-13 Score=113.19 Aligned_cols=213 Identities=9% Similarity=-0.113 Sum_probs=141.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCC---------
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKC--------- 84 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--------- 84 (246)
.|++..|..+..+|.+.|++++|.+.|+.+.+..+.+..+|..+..++...|++++|...|+++....-..
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 47999999999999999999999999998864346677899999999999999999999999887652000
Q ss_pred -------------------------------------CCCCC-------------------------CccHHHHHHHHHH
Q 043380 85 -------------------------------------SSGGF-------------------------HPDIFTYATLLMG 102 (246)
Q Consensus 85 -------------------------------------~~~~~-------------------------~p~~~~~~~ll~~ 102 (246)
..... +.+...+..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 00000 0112233333333
Q ss_pred HH---ccCCHHHHHHHHHHHHh-----CCCC-------CCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 103 FR---HAKDLQSLLEIVFEMKS-----CCNL-------ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 103 ~~---~~~~~~~a~~~~~~m~~-----~~~~-------~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
+. +.|++++|..+|+++.. .... ..+..++..+...+...|++++ |..+|+...+.
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~l~~----- 266 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG----AHEDIKKAIEL----- 266 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH----HHHHHHHHHHH-----
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhh-----
Confidence 33 26777777777777665 1111 1124566677777777777777 77777777665
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
.|+..++..+..++...|++++|...++......+.. + .+|..+...|...|++++|.+.+++..+..
T Consensus 267 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 267 --FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN--S----SVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp --CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC--T----HHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred --CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC--H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2336666677777777777777777777765443221 1 156666667777777777777776665543
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.58 E-value=1.4e-13 Score=116.26 Aligned_cols=211 Identities=8% Similarity=-0.010 Sum_probs=169.4
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
..|+...|..+...+...|++++|.+.|+......+.+..+|..+...+...|++++|...|++..+. .+.+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~ 343 (537)
T 3fp2_A 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPEN 343 (537)
T ss_dssp HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCC
Confidence 45668888889999999999999999998876444667888999999999999999999999999886 1334
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
...|..+...|...|++++|...+++..+ ..|+ ...+..+...+...|++++ |...|+...+.....+....
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKL---KFPTLPEVPTFFAEILTDRGDFDT----AIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHCSSCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCCHHH----HHHHHHHHHHcCCcchhhHH
Confidence 67889999999999999999999999988 3344 6788899999999999999 99999998876322222222
Q ss_pred chhhHHHHHHHHHhc----------CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 172 KPHLYVSMMHELAAR----------VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 172 ~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
....+.....++... |++++|...|++.....+.. . .++..+...|...|++++|.+.|++..+
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~--~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS----E--QAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC----H--HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC----H--HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 233355556777787 99999999999987543221 1 2789999999999999999999999877
Q ss_pred hcc
Q 043380 242 RWK 244 (246)
Q Consensus 242 ~g~ 244 (246)
..+
T Consensus 491 ~~~ 493 (537)
T 3fp2_A 491 LAR 493 (537)
T ss_dssp HC-
T ss_pred hCC
Confidence 544
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=1.6e-13 Score=108.27 Aligned_cols=202 Identities=11% Similarity=-0.026 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
+...+..+...+.+.|++++|..+|+++.+..+.+...+..+..++...|++++|...|+++.+. .+.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHH
Confidence 44456678889999999999999999986544668889999999999999999999999999986 2446789
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH-HHHHHH--------------HH-HHHhcCChhhhhhHHHHHHHHH
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR-STFTAM--------------VD-ALLYSGSIKVVGLYALCIFGEI 159 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~l--------------i~-~~~~~~~~~~~~~~a~~~~~~m 159 (246)
+..+...|...|++++|...++.... ..|+. ..+..+ .. .+...|++++ |..+++..
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~ 164 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLL---SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE----CRTLLHAA 164 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TSTTTTTC--------------------CCTTSHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH----HHHHHHHH
Confidence 99999999999999999999999988 33442 223222 22 3778889999 99999999
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 160 VKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
.+. .+.+..++..+...|...|++++|...+++.....+. .. .+|..+...+...|++++|.+.+++.
T Consensus 165 ~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 165 LEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD----DA--QLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----cH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 886 2346788999999999999999999999998754321 11 27889999999999999999999998
Q ss_pred Hhhcc
Q 043380 240 ITRWK 244 (246)
Q Consensus 240 ~~~g~ 244 (246)
.+..+
T Consensus 233 ~~~~~ 237 (327)
T 3cv0_A 233 LDINP 237 (327)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 76543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=9.9e-14 Score=108.85 Aligned_cols=192 Identities=8% Similarity=0.002 Sum_probs=155.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYA 97 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~ 97 (246)
..-.+..+|...|+++.|...++. .-+|+..++..+...+...++.++|.+.++++... +..|+ ...+.
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~-------~~~P~~~~~~~ 105 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSR-------SVDVTNTTFLL 105 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS-------CCCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-------ccCCCCHHHHH
Confidence 445678899999999999986654 24678889999999999999999999999999876 44564 55667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh--
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL-- 175 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~-- 175 (246)
.+-..+...|++++|.+.+++ ..+...+..+...|.+.|++++ |.+.|+.+.+. .|+...
T Consensus 106 ~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~----A~~~l~~~~~~-------~p~~~~~~ 167 (291)
T 3mkr_A 106 MAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDL----ARKELKKMQDQ-------DEDATLTQ 167 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------CTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhh-------CcCcHHHH
Confidence 777889999999999999987 2568889999999999999999 99999999886 355321
Q ss_pred -HHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 176 -YVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 176 -~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
....+..+...|++++|..+|+++....+ .+.. +|+.+..++.+.|++++|.+.|++..+..+
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p----~~~~--~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCS----PTLL--LLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSC----CCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHhCC----CcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 12233444556999999999999986532 2222 789999999999999999999999877654
No 32
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=2.7e-13 Score=106.21 Aligned_cols=226 Identities=8% Similarity=-0.019 Sum_probs=169.3
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK--------GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKC 84 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 84 (246)
.+.+..++..+...+...|++++|..+|++... ..+.....+..+...|...|++++|...+++......+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999988753 233356778899999999999999999999988641000
Q ss_pred CCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 85 SSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC-----NLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 85 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
..........++..+...|...|++++|...+++..+.. +-.|+ ...+..+...|...|++++ |.++++.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE----VEYYYQR 178 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH----HHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH----HHHHHHH
Confidence 000123346689999999999999999999999887721 22343 5678899999999999999 9999999
Q ss_pred HHHhhcCCC-CCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCC--------------------------------
Q 043380 159 IVKRVCSNP-GLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDST-------------------------------- 204 (246)
Q Consensus 159 m~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------------------------------- 204 (246)
..+...... +..| ...++..+..+|...|++++|...+++......
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 877421110 1123 346788999999999999999999988763100
Q ss_pred ------------CCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 205 ------------GTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 205 ------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
....| ....++..+..+|.+.|++++|.++|++..+..
T Consensus 259 ~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 00111 123378889999999999999999999887654
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2.7e-12 Score=93.27 Aligned_cols=167 Identities=10% Similarity=-0.038 Sum_probs=134.7
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
-++.+|..+-..|.+.|++++|++.|++..+--+-+...|..+..+|.+.|++++|...+...... .+-+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--------DTTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CchhHH
Confidence 367788889999999999999999998875433557788888888999999999999999888875 234566
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.+..+...+...++++.|...+..... ..|+ ...+..+...|...|++++ |++.|++..+. -+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~~l~~------~p~~~ 141 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDK----AIEAYEKTISI------KPGFI 141 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchh----HHHHHHHHHHh------cchhh
Confidence 777777888888999999999988877 3454 7778888889999999999 99999988876 23356
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCC
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPD 202 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (246)
.+|..+..+|...|++++|.+.|++..+.
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 78888888999999999999999887643
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=1.6e-12 Score=100.13 Aligned_cols=208 Identities=11% Similarity=-0.015 Sum_probs=161.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDS----LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
.+...+..+..+|.+.|++++|.+.|+.... .+++. ..|..+...+...|++++|.+.|++..+. .+
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~ 105 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DT 105 (272)
T ss_dssp CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------ST
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cc
Confidence 3455788889999999999999999998764 22333 34889999999999999999999999986 23
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
.+..+|..+...|...|++++|...|++..+ ..|+ ...+..+...+...+++++ |...|+...+. .
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~~------~ 172 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVK----ADSSFVKVLEL------K 172 (272)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------S
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh------C
Confidence 3567899999999999999999999999988 3555 6677777734445569999 99999999886 2
Q ss_pred CcchhhHHHHHHHHHhcCC---hhHHhhHHHhhCCCCCCCCC--chhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 170 WPKPHLYVSMMHELAARVD---YDIVKSPYRRMWPDSTGTIS--PEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
+.+...+..+..++...|+ +++|...+++.......... ......+|..+...|...|++++|.+.|++..+..+
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 3346778888888888888 88888888876532111011 111123788899999999999999999999876544
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=2.3e-12 Score=93.68 Aligned_cols=168 Identities=10% Similarity=-0.000 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
-+...|..+-..|...|++++|.+.|++..+. -+-+..+|..+..+|.+.|++++|...+..... ..|+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~ 71 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTT 71 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCch
Confidence 35678999999999999999999999999986 133577899999999999999999999999988 3444
Q ss_pred -HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCC
Q 043380 129 -RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207 (246)
Q Consensus 129 -~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (246)
...+..+...+...++++. |...+...... .+-+...+..+..+|...|++++|.+.|++....++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~----a~~~~~~a~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~- 140 (184)
T 3vtx_A 72 SAEAYYILGSANFMIDEKQA----AIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF- 140 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred hHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-
Confidence 7778888899999999999 99999998886 33456888999999999999999999999987654321
Q ss_pred CchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 208 SPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
. .+|..+..+|.+.|++++|++.|++..+..
T Consensus 141 ---~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 141 ---I--RAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp ---H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ---h--hHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 1 278999999999999999999999887643
No 36
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=7.8e-12 Score=98.70 Aligned_cols=209 Identities=15% Similarity=0.092 Sum_probs=165.4
Q ss_pred cCcCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 043380 13 WKLNTIVMNAVIEASRE-------AQRI-------DEAYQILESVEKGLEP-DSLSYNILISACIKTKKLDVTMPFNEQL 77 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~~~~~~~~-~~~t~~~li~~~~~~~~~~~a~~~~~~m 77 (246)
.+-++..|..+...+.. .|++ ++|..+|++....+.| +...|..+...+.+.|++++|.++|++.
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45678888888888764 4885 8999999998764445 5668999999999999999999999999
Q ss_pred HhccCCCCCCCCCcc-HH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCChhhhhhHHHH
Q 043380 78 KDNGQKCSSGGFHPD-IF-TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL-YSGSIKVVGLYALC 154 (246)
Q Consensus 78 ~~~~~~~~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~~~~~~~~~~a~~ 154 (246)
.+. .|+ .. .|..+...+.+.|++++|..+|++..+ .. +++...|........ ..|++++ |..
T Consensus 126 l~~---------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-p~~~~~~~~~a~~~~~~~~~~~~----A~~ 190 (308)
T 2ond_A 126 LAI---------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DA-RTRHHVYVTAALMEYYCSKDKSV----AFK 190 (308)
T ss_dssp HTS---------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-ST-TCCTHHHHHHHHHHHHTSCCHHH----HHH
T ss_pred Hhc---------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHHcCCHHH----HHH
Confidence 985 453 33 899999999999999999999999988 32 223455544433322 3699999 999
Q ss_pred HHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHH
Q 043380 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234 (246)
Q Consensus 155 ~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 234 (246)
+|+...+. .+-+...|..++..+.+.|++++|..+|++...... .+|......|..++..+.+.|+.+.|..
T Consensus 191 ~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 191 IFELGLKK------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHH------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999886 223568899999999999999999999999875421 2333223378899999999999999999
Q ss_pred HHHHHHhhcc
Q 043380 235 KLSNTITRWK 244 (246)
Q Consensus 235 ~~~~m~~~g~ 244 (246)
++++..+..+
T Consensus 263 ~~~~a~~~~p 272 (308)
T 2ond_A 263 VEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcc
Confidence 9999887654
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=5.2e-12 Score=96.23 Aligned_cols=170 Identities=10% Similarity=-0.094 Sum_probs=147.0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-c
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-D 92 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~ 92 (246)
+.+...+..+..+|.+.|++++|.+.|++.....+.+...+..+...|...|++++|.++|+++... +..| +
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 140 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD-------TLYPER 140 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-------TTCTTH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-------ccCccc
Confidence 4578889999999999999999999999876434567889999999999999999999999999873 2345 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++ |...++...+. ...
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~------~~~ 207 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKEREYVP----ARQYYDLFAQG------GGQ 207 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHTT------SCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CcC
Confidence 67889999999999999999999999988 3344 7889999999999999999 99999998775 345
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
+...+..+...+...|++++|.++++.+....
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 66788899999999999999999999987543
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.51 E-value=1.8e-12 Score=109.44 Aligned_cols=206 Identities=14% Similarity=0.019 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
..++..+...+...|++++|...|+.... ..|+...|..+...+...|++++|.+.|+++.+. .+.+..+|
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~ 313 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESIN-LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTY 313 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHH
Confidence 33577777888999999999999998763 2566888999999999999999999999999986 24467789
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++ |..+++...+. .+.+..+
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~------~~~~~~~ 380 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQS---LNPENVYPYIQLACLLYKQGKFTE----SEAFFNETKLK------FPTLPEV 380 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCSHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCTHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CCCChHH
Confidence 9999999999999999999999988 3354 6788999999999999999 99999999886 2345678
Q ss_pred HHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc----------CChhHHHHHHHHHHhhcc
Q 043380 176 YVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND----------GQVDLALDKLSNTITRWK 244 (246)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~ 244 (246)
+..+...+...|++++|...+++.....+...........+..+...+... |++++|...|+...+..+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999987633211111111111244455677777 999999999999877544
No 39
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=3.1e-13 Score=113.10 Aligned_cols=198 Identities=12% Similarity=-0.002 Sum_probs=171.2
Q ss_pred cCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc
Q 043380 13 WKLNTIVMNAVIEASREAQRI-DEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 91 (246)
.+.+...+..+-.++...|++ ++|++.|++..+-.+.+...|..+..+|...|++++|.+.|++..+. .|
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p 168 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---------CK 168 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------CC
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CC
Confidence 345788899999999999999 99999999876433556889999999999999999999999999986 57
Q ss_pred cHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhc--------CChhhhhhHHH
Q 043380 92 DIFTYATLLMGFRHA---------KDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYS--------GSIKVVGLYAL 153 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------~~~~~~~~~a~ 153 (246)
+...+..+-..|... |++++|...|++..+ +.|+ ...|..+..+|... |++++ |.
T Consensus 169 ~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~----A~ 241 (474)
T 4abn_A 169 NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ----AL 241 (474)
T ss_dssp CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH----HH
T ss_pred CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHH----HH
Confidence 788999999999999 999999999999988 4565 88899999999998 99999 99
Q ss_pred HHHHHHHHhhcCCCCCCc----chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCCh
Q 043380 154 CIFGEIVKRVCSNPGLWP----KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV 229 (246)
Q Consensus 154 ~~~~~m~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (246)
..|++..+. .| +...|..+..+|...|++++|...|++.....+.. + .++..+...+...|++
T Consensus 242 ~~~~~al~~-------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~----~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 242 SAYAQAEKV-------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW--P----EPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHH-------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHHHH
Confidence 999999886 34 67899999999999999999999999987544322 1 2688899999999999
Q ss_pred hHHHHHHHHH
Q 043380 230 DLALDKLSNT 239 (246)
Q Consensus 230 ~~a~~~~~~m 239 (246)
++|.+.+..+
T Consensus 309 ~eAi~~~~~~ 318 (474)
T 4abn_A 309 TSLLESKGKT 318 (474)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhccc
Confidence 9999876554
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=7e-12 Score=94.75 Aligned_cols=169 Identities=9% Similarity=-0.036 Sum_probs=148.1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.+...+..+..++.+.|++++|.+.|+......+.+...+..+...+...|++++|.++++++.+. .+.+.
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~ 125 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENG 125 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCCSH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCH
Confidence 4568889999999999999999999999886444567889999999999999999999999999986 24467
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
..+..+...+...|++++|...+++..+ ..| +...+..+...+...|++++ |...|+...+. ...+
T Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~------~~~~ 192 (243)
T 2q7f_A 126 DLFYMLGTVLVKLEQPKLALPYLQRAVE---LNENDTEARFQFGMCLANEGMLDE----ALSQFAAVTEQ------DPGH 192 (243)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHH----HHHHHHHHHHH------CTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------Cccc
Confidence 7899999999999999999999999988 334 47889999999999999999 99999999886 2345
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
..++..+..+|...|++++|...+++.....
T Consensus 193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 193 ADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7889999999999999999999999987543
No 41
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.50 E-value=1.3e-14 Score=118.23 Aligned_cols=145 Identities=12% Similarity=0.151 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
+++.+|..|..++.+.|++++|++.|.. .+|..+|..++.++...|++++|..+++..++. .++..
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik-----a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---------~~~~~ 95 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---------ARESY 95 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------Cccch
Confidence 4445888888888888888888888854 356668888888888888888888866666553 34455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|++++ |..+|..+ .
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yee----A~~~Y~~a--------------~ 149 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDA----AKLLYNNV--------------S 149 (449)
T ss_dssp -------------CHHHHTTTTT--------CC----------------CTTT----HHHHHHHT--------------T
T ss_pred hHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHH----HHHHHHHh--------------h
Confidence 66666667777776666665553 1444566666666666666666 66666543 1
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
.|..+..++.+.|++++|.+.+.+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc
Confidence 3444444444444444444444444
No 42
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=7.4e-12 Score=90.34 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
...|..+...+...|++++|.+.|+.+....+.+...+..+...+...|++++|...++++.+. .+.+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--------APDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHH
Confidence 3456667777888888888888888776444556777888888888888888888888888775 23456677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhH
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~ 176 (246)
..+...+...|++++|.+.++.... . .+.+...+..+...+...|++++ |...++...+. ...+..++
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~------~~~~~~~~ 147 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAE-A-NPINFNVRFRLGVALDNLGRFDE----AIDSFKIALGL------RPNEGKVH 147 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh-c-CcHhHHHHHHHHHHHHHcCcHHH----HHHHHHHHHhc------CccchHHH
Confidence 7788888888888888888888777 2 22346677778888888888888 88888887775 23345677
Q ss_pred HHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 177 VSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
..+...+...|++++|...++....
T Consensus 148 ~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 148 RAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888888888877653
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=3.2e-12 Score=95.78 Aligned_cols=166 Identities=8% Similarity=-0.015 Sum_probs=133.1
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-----------CCcchHHHHHHHHHhcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKT-----------KKLDVTMPFNEQLKDNG 81 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~ 81 (246)
.+.++..|..+..++.+.|++++|...|++..+--+.+...+..+...+... |++++|...|++..+.
T Consensus 35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~- 113 (217)
T 2pl2_A 35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV- 113 (217)
T ss_dssp SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-
Confidence 4567888999999999999999999999987643466788899999999999 9999999999999986
Q ss_pred CCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHH
Q 043380 82 QKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIV 160 (246)
Q Consensus 82 ~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~ 160 (246)
.| +...|..+-.+|...|++++|...|++..+ .. .+...+..+...|...|++++ |...|+...
T Consensus 114 --------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~----A~~~~~~al 178 (217)
T 2pl2_A 114 --------NPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDE----ALAQYAKAL 178 (217)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHH----HHHHHHHHH
T ss_pred --------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHH----HHHHHHHHH
Confidence 44 567899999999999999999999999998 55 678899999999999999999 999999998
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 161 KRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 161 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
+. -+.+...+..+..++...|++++|...+++..
T Consensus 179 ~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 179 EQ------APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HH------STTCHHHHHHHHHHHTC---------------
T ss_pred Hh------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 86 23356788999999999999999999988753
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=5.2e-11 Score=92.01 Aligned_cols=194 Identities=9% Similarity=-0.003 Sum_probs=135.1
Q ss_pred cCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHhccCCCCC
Q 043380 15 LNTIVMNAVIEASRE----AQRIDEAYQILESVEKGLEPDSLSYNILISACIK----TKKLDVTMPFNEQLKDNGQKCSS 86 (246)
Q Consensus 15 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~ 86 (246)
-++..+..+...|.. .+++++|.+.|++... ..+...+..+-..|.. .+++++|..+|++..+.
T Consensus 36 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------ 107 (273)
T 1ouv_A 36 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL------ 107 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc------
Confidence 345566677777777 7777777777776642 1266677777777777 77777777777777765
Q ss_pred CCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChhhhhhHHHHHHHH
Q 043380 87 GGFHPDIFTYATLLMGFRH----AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY----SGSIKVVGLYALCIFGE 158 (246)
Q Consensus 87 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~~a~~~~~~ 158 (246)
+ +...+..+-..|.. .+++++|...|++..+ .+ +...+..+...|.. .+++++ |...|+.
T Consensus 108 -~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~----A~~~~~~ 175 (273)
T 1ouv_A 108 -K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKK----ALASYDK 175 (273)
T ss_dssp -T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHH----HHHHHHH
T ss_pred -C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHH----HHHHHHH
Confidence 2 55667777777777 7778888887777777 43 45566667777776 777777 8877777
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHHh----cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh----cCChh
Q 043380 159 IVKRVCSNPGLWPKPHLYVSMMHELAA----RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN----DGQVD 230 (246)
Q Consensus 159 m~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 230 (246)
..+. + +...+..+-..|.. .+++++|...|++....+. +. ++..+...|.. .++++
T Consensus 176 a~~~-----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----~~----a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 176 ACDL-----K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----GG----GCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp HHHT-----T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----HH----HHHHHHHHHHTTSSSSCCST
T ss_pred HHHC-----C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----HH----HHHHHHHHHHcCCCcccCHH
Confidence 7664 2 34566677777777 7788888888877654421 11 56667777777 77888
Q ss_pred HHHHHHHHHHhhcc
Q 043380 231 LALDKLSNTITRWK 244 (246)
Q Consensus 231 ~a~~~~~~m~~~g~ 244 (246)
+|.++|+...+.|+
T Consensus 240 ~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 240 QAIENFKKGCKLGA 253 (273)
T ss_dssp THHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 88888877776654
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=1.2e-11 Score=92.24 Aligned_cols=169 Identities=8% Similarity=-0.071 Sum_probs=145.7
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHhccCCCCCCCCCc-
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKT-KKLDVTMPFNEQLKDNGQKCSSGGFHP- 91 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~p- 91 (246)
+.+...|..+..+|...|++++|.+.|+....-.+.+..++..+...+... |++++|...++++.+. ...|
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~ 111 (225)
T 2vq2_A 39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-------PTYPT 111 (225)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-------TTCSC
T ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-------cCCcc
Confidence 456888999999999999999999999988644466788999999999999 9999999999999883 2234
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
+...+..+..++...|++++|...++++.+ ..|+ ...+..+...+...|++++ |..+++...+. .+
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~~~------~~ 178 (225)
T 2vq2_A 112 PYIANLNKGICSAKQGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGD----ADYYFKKYQSR------VE 178 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH------HC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CC
Confidence 467899999999999999999999999988 3454 7889999999999999999 99999999886 22
Q ss_pred -cchhhHHHHHHHHHhcCChhHHhhHHHhhCCC
Q 043380 171 -PKPHLYVSMMHELAARVDYDIVKSPYRRMWPD 202 (246)
Q Consensus 171 -p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (246)
.+...+..+...+...|+.+.+..+++.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 179 VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 46677888888899999999999999998643
No 46
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.48 E-value=9.1e-14 Score=113.19 Aligned_cols=188 Identities=12% Similarity=0.054 Sum_probs=90.8
Q ss_pred hhHHHHhcc-cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccC
Q 043380 4 ENEIVNREH-WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQ 82 (246)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 82 (246)
.++++++.+ -.+|..+|..++.++...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++
T Consensus 47 ~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------- 118 (449)
T 1b89_A 47 MVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN------- 118 (449)
T ss_dssp ---------------------------------------------------------------CHHHHTTTTT-------
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------
Confidence 445555555 3578889999999999999999999977776653 5668889999999999999999887763
Q ss_pred CCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 83 KCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 83 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.|+..+|+.+...|...|++++|...|..+. .|..+..++.+.|++++ |.+.+....
T Consensus 119 -------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA~~L~~Lg~yq~----AVea~~KA~-- 175 (449)
T 1b89_A 119 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQA----AVDGARKAN-- 175 (449)
T ss_dssp -------CC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHH----HHHHHHHHT--
T ss_pred -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHHHHHHHhccHHH----HHHHHHHcC--
Confidence 2677799999999999999999999999763 49999999999999999 999998771
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 163 VCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 163 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
++.+|..++.+|...|+++.|......+. ..|+. ...++..|.+.|++++|..+++.-..
T Consensus 176 ---------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~----l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 176 ---------STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADE----LEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHH----HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ---------CchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhh----HHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 57899999999999999999976666543 33332 34588999999999999999987653
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.1e-10 Score=90.10 Aligned_cols=193 Identities=10% Similarity=-0.035 Sum_probs=166.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIK----TKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
-++..+..+-..|.+.|++++|.+.|++... +.+...+..+...|.. .+++++|..+|++..+. +
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~-- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------N-- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-------C--
Confidence 3567788889999999999999999998765 4566788889999999 99999999999999986 3
Q ss_pred ccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChhhhhhHHHHHHHHHHHh
Q 043380 91 PDIFTYATLLMGFRH----AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY----SGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 91 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+...+..+-..|.. .+++++|...|++..+ .+ +...+..+...|.. .+++++ |...|+...+.
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~----A~~~~~~a~~~ 143 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKK----AVEYFTKACDL 143 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHH----HHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHH----HHHHHHHHHhc
Confidence 67788899999999 9999999999999998 54 67889999999999 999999 99999999886
Q ss_pred hcCCCCCCcchhhHHHHHHHHHh----cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh----cCChhHHHH
Q 043380 163 VCSNPGLWPKPHLYVSMMHELAA----RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN----DGQVDLALD 234 (246)
Q Consensus 163 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 234 (246)
+ +...+..+-..|.. .+++++|...|++....+ .+. ++..+...|.. .+++++|.+
T Consensus 144 -----~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~----a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 144 -----N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSP----GCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp -----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH----HHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred -----C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH----HHHHHHHHHHcCCCCCccHHHHHH
Confidence 4 56677888888888 999999999999987553 222 67889999999 999999999
Q ss_pred HHHHHHhhc
Q 043380 235 KLSNTITRW 243 (246)
Q Consensus 235 ~~~~m~~~g 243 (246)
+|+...+.+
T Consensus 208 ~~~~a~~~~ 216 (273)
T 1ouv_A 208 RYSKACELE 216 (273)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 999887655
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=5.8e-12 Score=90.88 Aligned_cols=167 Identities=10% Similarity=-0.028 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CH
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DR 129 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~ 129 (246)
...|..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++...+ ..| +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---DAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCH
Confidence 355777888899999999999999998875 344678899999999999999999999999988 334 47
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCc
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISP 209 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 209 (246)
..+..+...+...|++++ |.+.++...+. .+.+...+..+...+...|++++|...+++.....+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---- 142 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDL----AVPLLIKVAEA------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---- 142 (186)
T ss_dssp HHHHHHHHHHHHHTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHHhcCHHH----HHHHHHHHHhc------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc----
Confidence 888999999999999999 99999999886 3456788899999999999999999999998754322
Q ss_pred hhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 210 EVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.. .++..+...+...|++++|.+++++..+..+
T Consensus 143 ~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 143 EG--KVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 11 2788999999999999999999999876543
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.9e-11 Score=93.05 Aligned_cols=183 Identities=14% Similarity=0.064 Sum_probs=147.0
Q ss_pred hhHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHHhcCCcchHHHHHHH
Q 043380 4 ENEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEK---GLEPD----SLSYNILISACIKTKKLDVTMPFNEQ 76 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~----~~t~~~li~~~~~~~~~~~a~~~~~~ 76 (246)
.++.+.+.. .++..|..+..++...|++++|.+.|+.... ...|+ ..+|..+...+...|++++|...|++
T Consensus 27 ~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 104 (258)
T 3uq3_A 27 HYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104 (258)
T ss_dssp HHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 344555555 7888999999999999999999999988642 12222 57889999999999999999999999
Q ss_pred HHhccCCCC-----------------CCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHH
Q 043380 77 LKDNGQKCS-----------------SGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVD 137 (246)
Q Consensus 77 m~~~~~~~~-----------------~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 137 (246)
.....-... .....| +...|..+...+...|++++|...|+.... ..| +..+|..+..
T Consensus 105 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~ 181 (258)
T 3uq3_A 105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAA 181 (258)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHH
Confidence 987310000 000233 355788899999999999999999999988 334 4788999999
Q ss_pred HHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 138 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
.|...|++++ |...|+...+. .+.+..++..+..++...|++++|...++....
T Consensus 182 ~~~~~~~~~~----A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 182 ALAKLMSFPE----AIADCNKAIEK------DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHTTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHH----HHHHHHHHHHh------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999 99999999886 234578899999999999999999999998764
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=7.9e-12 Score=96.24 Aligned_cols=201 Identities=9% Similarity=-0.003 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHH
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYA 97 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 97 (246)
..+......+.+.|++++|+..|+...+..+.+...+..+..+|...|++++|.+.+++..+.. .........|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~ 78 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-----NATKAKSADFE 78 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CTTTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----CchhHHHHHHH
Confidence 3455677888999999999999999865445566689999999999999999999999999851 01122345689
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhH
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~ 176 (246)
.+...|...|++++|...|+...+ ..|+ ..++..+...|...|++++ |...|++..+. .+.+..++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~al~~------~~~~~~~~ 145 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSYFYNKGNFPL----AIQYMEKQIRP------TTTDPKVF 145 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHH----HHHHHGGGCCS------SCCCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHccCHHH----HHHHHHHHhhc------CCCcHHHH
Confidence 999999999999999999999988 3444 6789999999999999999 99999988764 22345667
Q ss_pred HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCC---hhHHHHHHHHHHhh
Q 043380 177 VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ---VDLALDKLSNTITR 242 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~ 242 (246)
..+...+...+++++|...|++.....+.. . ..+..+...+...|+ +++|...+++..+.
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELKPNI----Y--IGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----H--HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccc----h--HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 777734445669999999999987654322 1 167778888888888 88888888877654
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=3.2e-11 Score=98.01 Aligned_cols=199 Identities=11% Similarity=0.005 Sum_probs=162.1
Q ss_pred CcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 14 KLNTIVMNAVIEASREAQR-IDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
+-+...|+.+..++.+.|+ +++|+..|++...--+.+...|+.+-.++...|++++|+..|+++++. -+-+
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~ 199 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKN 199 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTC
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccC
Confidence 4567889999999999997 999999999876444668889999999999999999999999999986 2346
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHh-cCChhhhhhHH-----HHHHHHHHHhhcC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLY-SGSIKVVGLYA-----LCIFGEIVKRVCS 165 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~-~~~~~~~~~~a-----~~~~~~m~~~~~~ 165 (246)
...|..+-.++.+.|++++|+..|+++.+ +.|+ ...|+.+...+.. .|..++ | +..|+.....
T Consensus 200 ~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~e----A~~~~el~~~~~Al~l--- 269 (382)
T 2h6f_A 200 YHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR----AVLEREVQYTLEMIKL--- 269 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH----HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchH----HHHHHHHHHHHHHHHH---
Confidence 77999999999999999999999999998 5565 7889999999999 666577 7 5888888776
Q ss_pred CCCCCc-chhhHHHHHHHHHhcC--ChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcC---------ChhHHH
Q 043380 166 NPGLWP-KPHLYVSMMHELAARV--DYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDG---------QVDLAL 233 (246)
Q Consensus 166 ~~~~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~ 233 (246)
.| +...|..+..++...| ++++|.+.+.++ +..+ ... .++..+...|.+.| .+++|.
T Consensus 270 ----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p----~~~--~al~~La~~~~~~~~~~~~~~~~~~~~A~ 338 (382)
T 2h6f_A 270 ----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH----SSP--YLIAFLVDIYEDMLENQCDNKEDILNKAL 338 (382)
T ss_dssp ----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC----CCH--HHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC----CCH--HHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 34 4578888888999988 689999999988 3322 111 26788888888864 358999
Q ss_pred HHHHHH-Hh
Q 043380 234 DKLSNT-IT 241 (246)
Q Consensus 234 ~~~~~m-~~ 241 (246)
++|+++ .+
T Consensus 339 ~~~~~l~~~ 347 (382)
T 2h6f_A 339 ELCEILAKE 347 (382)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998 44
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=1.5e-11 Score=99.98 Aligned_cols=197 Identities=10% Similarity=0.002 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK-LDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
+...|+.+-..+.+.|++++|++.|++...--+-+...|+.+..++...|+ +++|+..|++.+.. -+-+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~ 167 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHH
Confidence 356788888899999999999999998764346678899999999999997 99999999999986 233677
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.|+.+-.++...|++++|+..|++..+ +.|+ ...|..+..++...|++++ |+..|+.+.+. -.-+.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~---ldP~~~~a~~~lg~~~~~~g~~~e----Al~~~~~al~l------~P~~~ 234 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDN----ELQYVDQLLKE------DVRNN 234 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTT----HHHHHHHHHHH------CTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHh------CCCCH
Confidence 999999999999999999999999998 5565 8889999999999999999 99999999987 23356
Q ss_pred hhHHHHHHHHHh-cCChhHH-----hhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcC--ChhHHHHHHHHH
Q 043380 174 HLYVSMMHELAA-RVDYDIV-----KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDG--QVDLALDKLSNT 239 (246)
Q Consensus 174 ~~~~~li~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m 239 (246)
..|+.+..++.. .|..++| ...+++....++.. ..+|..+...+...| ++++|++.+.++
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~------~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 889999999999 6665777 47777766543221 127888888898888 689999988876
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=1.9e-11 Score=94.17 Aligned_cols=219 Identities=12% Similarity=0.007 Sum_probs=150.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCC
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-------GL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS 85 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~-~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 85 (246)
+....++..+...|...|++++|...|++... +- +....++..+...|...|++++|.+.|.+......+..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 44577889999999999999999999988642 11 23456789999999999999999999999886410000
Q ss_pred CCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 86 SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC------NLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 86 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
....+....++..+...|...|++++|...+++... . +-.|+ ..++..+...|...|++++ |..++++
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~ 194 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE-IYATRLGPDDPNVAKTKNNLASCYLKQGKYQD----AETLYKE 194 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH----HHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH----HHHHHHH
Confidence 001233466899999999999999999999999877 2 11343 5678899999999999999 9999999
Q ss_pred HHHhhcC--CCCCCcch-hhHHHHHHHHHhcCChhHH------hhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCCh
Q 043380 159 IVKRVCS--NPGLWPKP-HLYVSMMHELAARVDYDIV------KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV 229 (246)
Q Consensus 159 m~~~~~~--~~~~~p~~-~~~~~li~~~~~~g~~~~a------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (246)
..+.... .....|.. ..+..+...+...+....+ ...+..... ..+. ...++..+...|...|++
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~la~~~~~~g~~ 268 (283)
T 3edt_B 195 ILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-----DSPT-VNTTLRSLGALYRRQGKL 268 (283)
T ss_dssp HHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-----CCHH-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-----CCHH-HHHHHHHHHHHHHHcCCH
Confidence 8764110 00123333 3333333343333333322 222222211 1122 233788899999999999
Q ss_pred hHHHHHHHHHHhhc
Q 043380 230 DLALDKLSNTITRW 243 (246)
Q Consensus 230 ~~a~~~~~~m~~~g 243 (246)
++|.++|++..+..
T Consensus 269 ~~A~~~~~~al~~~ 282 (283)
T 3edt_B 269 EAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=1.5e-11 Score=102.93 Aligned_cols=188 Identities=9% Similarity=-0.081 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHH
Q 043380 33 IDEAYQILESVEKGLEPDSLSYNILISACIKTKKL-DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQS 111 (246)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 111 (246)
++++...++......+.+...+..+-..+...|++ ++|.+.|++..+. -+-+...|..+-.+|...|++++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 55666667666544455788899999999999999 9999999999986 13347899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---------CChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 043380 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYS---------GSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182 (246)
Q Consensus 112 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---------~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~ 182 (246)
|...|++..+ +.|+...+..+...|... |++++ |...|++..+. -.-+...|..+..+
T Consensus 156 A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~----A~~~~~~al~~------~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 156 AHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMD----SVRQAKLAVQM------DVLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHH----HHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHH----HHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 9999999998 568888899999999999 99999 99999999886 23456889999999
Q ss_pred HHhc--------CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 183 LAAR--------VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 183 ~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
|... |++++|...|++....++. .+.. ..+|..+..+|...|++++|.+.|++..+..+
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999 9999999999998754320 0012 22789999999999999999999999876544
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=7.9e-12 Score=96.25 Aligned_cols=195 Identities=12% Similarity=-0.082 Sum_probs=148.8
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.+..+|..+..+|...|++++|.+.|+......+.+...+..+...|...|++++|...|+++.+. .|+.
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------~~~~ 144 (275)
T 1xnf_A 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---------DPND 144 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCC
Confidence 4568899999999999999999999999987544567889999999999999999999999999986 4555
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-c
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-K 172 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~ 172 (246)
..+...+..+...|++++|...++.... . ..++...+ .++..+...++.++ |...++....... ...| +
T Consensus 145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~----a~~~~~~~~~~~~---~~~~~~ 214 (275)
T 1xnf_A 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFE-K-SDKEQWGW-NIVEFYLGNISEQT----LMERLKADATDNT---SLAEHL 214 (275)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHH-H-SCCCSTHH-HHHHHHTTSSCHHH----HHHHHHHHCCSHH---HHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCcchHHH-HHHHHHHHhcCHHH----HHHHHHHHhcccc---cccccc
Confidence 5555566666778999999999988777 2 22334444 47777888888888 9999988755310 1111 2
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
..++..+...|...|++++|...|++....++. .+.....++...|++++|++.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH---------NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT---------TCHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch---------hHHHHHHHHHHHHHHHhhHHHH
Confidence 578899999999999999999999998765422 1333456777888999888776
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=3.7e-11 Score=105.04 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=144.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DI 93 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~ 93 (246)
-++..|+.|-..|.+.|++++|++.|++..+-.+-+...|+.+-.+|.+.|++++|.+.|++.++. .| +.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---------~P~~~ 77 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---------SPTFA 77 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCH
Confidence 346789999999999999999999999876433556889999999999999999999999999986 45 47
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP- 171 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p- 171 (246)
..|+.+-.+|...|++++|.+.|++..+ +.|+ ...|+.+...|...|++++ |++.|++..+. .|
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~e----Ai~~~~~Al~l-------~P~ 143 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPE----AIASYRTALKL-------KPD 143 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------CSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-------CCC
Confidence 7999999999999999999999999988 5676 7889999999999999999 99999999886 34
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
+...+..+..++...|++++|.+.+++..
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 45889999999999999999998888754
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=2e-11 Score=106.70 Aligned_cols=164 Identities=11% Similarity=0.016 Sum_probs=144.7
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
-+...|+.|-..|.+.|++++|++.|++.++. .| +..+|+.|-.+|.+.|++++|...|++..+ +.|
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P 74 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISP 74 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCC
Confidence 35678999999999999999999999999986 45 477999999999999999999999999988 567
Q ss_pred C-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC
Q 043380 128 D-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG 205 (246)
Q Consensus 128 ~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (246)
+ ...|..+...|...|++++ |++.|++..+. .| +..+|..+..+|...|++++|...|++..+.++.
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~----A~~~~~kAl~l-------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQG----ALQCYTRAIQI-------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7 8899999999999999999 99999999886 34 4688999999999999999999999998765432
Q ss_pred CCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 206 TISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
. . .+|..+..+|...|++++|.+.+++..+
T Consensus 144 ~----~--~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 144 F----P--DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp C----H--HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred C----h--HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 2 1 2789999999999999999999988765
No 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=4.3e-10 Score=95.24 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=162.8
Q ss_pred cCcCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 043380 13 WKLNTIVMNAVIEASRE-------AQRID-------EAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFNEQL 77 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~-~~~~~t~~~li~~~~~~~~~~~a~~~~~~m 77 (246)
.+-++..|..+...+.+ .|+++ +|..+|++..+.+ +.+...|..+...+.+.|++++|..+|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34578888888888876 68977 8999999987533 446888999999999999999999999999
Q ss_pred HhccCCCCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHH-HHHhcCChhhhhhHHH
Q 043380 78 KDNGQKCSSGGFHPD--IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVD-ALLYSGSIKVVGLYAL 153 (246)
Q Consensus 78 ~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~-~~~~~~~~~~~~~~a~ 153 (246)
.+. .|+ ...|..+...+.+.|++++|.++|++..+ . .|+ ...|..... .+...|++++ |.
T Consensus 348 l~~---------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~--~~~~~~~~~~~a~~~~~~~~~~~~----A~ 411 (530)
T 2ooe_A 348 LAI---------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D--ARTRHHVYVTAALMEYYCSKDKSV----AF 411 (530)
T ss_dssp HHS---------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-C--TTCCTHHHHHHHHHHHHHTCCHHH----HH
T ss_pred hCc---------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c--cCCchHHHHHHHHHHHHHcCChhH----HH
Confidence 985 453 35899999999999999999999999988 3 333 333332222 2346899999 99
Q ss_pred HHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHH
Q 043380 154 CIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233 (246)
Q Consensus 154 ~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 233 (246)
.+|+...+. .+-+...|..++..+.+.|+.++|..+|++.....+ .+|......|...+......|+.+.+.
T Consensus 412 ~~~e~al~~------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 412 KIFELGLKK------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHH------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHH------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998886 223568899999999999999999999999875432 334322336888888888999999999
Q ss_pred HHHHHHHhh
Q 043380 234 DKLSNTITR 242 (246)
Q Consensus 234 ~~~~~m~~~ 242 (246)
++++++.+.
T Consensus 484 ~~~~r~~~~ 492 (530)
T 2ooe_A 484 KVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=1.6e-10 Score=86.85 Aligned_cols=173 Identities=12% Similarity=0.009 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
..|+..+......+...|++++|...|++..+. ...++...+..+..++...|++++|...|++..+ ..|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p 73 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNY 73 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTC
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCc
Confidence 346678888888999999999999999999986 2226777887899999999999999999999988 556
Q ss_pred C-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-------hhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 128 D-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-------HLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 128 ~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
+ ...|..+...|...|++++ |...+++..+. .+.+. ..|..+-..+...|++++|...|++.
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 74 NLANAYIGKSAAYRDMKNNQE----YIATLTEGIKA------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp SHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHH----HHHHHHHHHHH------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 6 6778899999999999999 99999999886 12233 45788888899999999999999998
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhcCCh---------------------------hHHHHHHHHHHhhcc
Q 043380 200 WPDSTGTISPEVQEEAGHLLMEAALNDGQV---------------------------DLALDKLSNTITRWK 244 (246)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---------------------------~~a~~~~~~m~~~g~ 244 (246)
...+ |.+....+|..+..+|...|+. ++|...|++..+..+
T Consensus 144 l~~~----p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 144 TDVT----SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp TTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcC----CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 7643 2200122688888888888887 889999888776544
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=2e-10 Score=90.51 Aligned_cols=199 Identities=9% Similarity=-0.017 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-------cCCc-------chHHHHH
Q 043380 17 TIVMNAVIEASREA----QRI----DEAYQILESVEKGLEPDSLSYNILISACIK-------TKKL-------DVTMPFN 74 (246)
Q Consensus 17 ~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~t~~~li~~~~~-------~~~~-------~~a~~~~ 74 (246)
...|...+...-+. ++. ++|..+|++.....+.+...|..+...+.. .|++ ++|..+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 45666666665443 233 788899988764446788889888888763 5886 8999999
Q ss_pred HHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HH-HHHHHHHHHHhcCChhhhhhH
Q 043380 75 EQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RS-TFTAMVDALLYSGSIKVVGLY 151 (246)
Q Consensus 75 ~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~~~~~~~~~~ 151 (246)
++.... +.| +...|..+...+.+.|++++|..+|++..+ +.|+ .. .|..+...+.+.|++++
T Consensus 88 ~rAl~~--------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~---- 152 (308)
T 2ond_A 88 ERAIST--------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKS---- 152 (308)
T ss_dssp HHHHTT--------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHH----
T ss_pred HHHHHH--------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHH----
Confidence 999983 355 456899999999999999999999999998 5565 33 89999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHH-hcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChh
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELA-ARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVD 230 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (246)
|..+|++..+. -.++...|........ ..|++++|..+|+......+. .. ..|..++..+.+.|+++
T Consensus 153 A~~~~~~a~~~------~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~----~~--~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 153 GRMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD----IP--EYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHHHHTS------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT----CH--HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhc------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cH--HHHHHHHHHHHHCCCHH
Confidence 99999999875 1233455554443322 379999999999998754322 12 27899999999999999
Q ss_pred HHHHHHHHHHhh
Q 043380 231 LALDKLSNTITR 242 (246)
Q Consensus 231 ~a~~~~~~m~~~ 242 (246)
+|..+|++....
T Consensus 221 ~A~~~~~~al~~ 232 (308)
T 2ond_A 221 NTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=3.9e-11 Score=97.94 Aligned_cols=219 Identities=10% Similarity=-0.012 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDS----LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
...+..+...+...|++++|...|++...-.+.+. ..|..+...|...|++++|...|++..+..... ......
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHH
Confidence 34455566788899999999999998763223333 478889999999999999999999987641000 011234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCC-----------------hhhhhhH
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGS-----------------IKVVGLY 151 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~-----------------~~~~~~~ 151 (246)
..++..+...|...|++++|...+++.... .+-.|. ..++..+...|...|+ +++
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~---- 201 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR---- 201 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH----
Confidence 568889999999999999999999987661 111233 5578889999999999 999
Q ss_pred HHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChh
Q 043380 152 ALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVD 230 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (246)
|.+.+++..+..... +-.| ...++..+...|...|++++|...+++..........+.....++..+...|...|+++
T Consensus 202 A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 202 AVEFYQENLKLMRDL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 999988865531100 1112 23578888999999999999999999876322111111222236788899999999999
Q ss_pred HHHHHHHHHHhh
Q 043380 231 LALDKLSNTITR 242 (246)
Q Consensus 231 ~a~~~~~~m~~~ 242 (246)
+|.+++++..+.
T Consensus 281 ~A~~~~~~al~~ 292 (411)
T 4a1s_A 281 DAAEHYKRTLAL 292 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=8e-11 Score=95.53 Aligned_cols=221 Identities=10% Similarity=0.005 Sum_probs=161.0
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD----SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 88 (246)
..+....+...-..+.+.|++++|...|++...-.+.+ ...|..+...+...|++++|...+++....... .+
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~ 81 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART---IG 81 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cc
Confidence 34566777788889999999999999999876322333 357888999999999999999999987653100 01
Q ss_pred CCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCC-------------------
Q 043380 89 FHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAMVDALLYSGS------------------- 144 (246)
Q Consensus 89 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~------------------- 144 (246)
-.| ...++..+...|...|++++|...+++......-.++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 122 3557888999999999999999999987661111112 4478889999999999
Q ss_pred -hhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHH
Q 043380 145 -IKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEA 222 (246)
Q Consensus 145 -~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 222 (246)
+++ |...++......... +-.| ...++..+...|...|++++|...+++..........+.....++..+...
T Consensus 162 ~~~~----A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 162 ALQA----AVDFYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHH----HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999 999998865531111 1112 235788889999999999999999998763221112222223368888999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 043380 223 ALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~ 241 (246)
|...|++++|.+++++..+
T Consensus 237 ~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHH
Confidence 9999999999999988764
No 63
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=3.3e-10 Score=88.65 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC-
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEK-----GLEPD-SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH- 90 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~- 90 (246)
..|+.....|...|++++|.+.|++... +-+++ ..+|+.+..+|...|++++|...|++..+..... |-.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~ 114 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR---GQFR 114 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHH
Confidence 3677788889999999999999987531 22222 5689999999999999999999999988641000 101
Q ss_pred ccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 91 PDIFTYATLLMGFRHA-KDLQSLLEIVFEMKSCCNLILD-------RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.-..+|+.+-..|... |++++|...|++..+ +.|+ ..++..+...|...|++++ |...|++....
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~ 187 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGE---WYAQDQSVALSNKCFIKCADLKALDGQYIE----ASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---HHHhCCChHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHH
Confidence 1145888999999996 999999999998876 2221 3568889999999999999 99999999886
Q ss_pred hcCCCCCCcch-----hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHH--hcCChhHHHHH
Q 043380 163 VCSNPGLWPKP-----HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAAL--NDGQVDLALDK 235 (246)
Q Consensus 163 ~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~ 235 (246)
.. .. +.. ..|..+..++...|++++|...|++.....+...... ....+..++.+|. ..+++++|++.
T Consensus 188 ~~---~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 188 SM---GN-RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp TS---SC-TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred Hh---cC-CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 11 111 2577888899999999999999999876544332211 1113445666664 45678888888
Q ss_pred HHHHH
Q 043380 236 LSNTI 240 (246)
Q Consensus 236 ~~~m~ 240 (246)
|+.+.
T Consensus 263 ~~~~~ 267 (292)
T 1qqe_A 263 FDNFM 267 (292)
T ss_dssp HTTSS
T ss_pred hccCC
Confidence 86653
No 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.29 E-value=5e-10 Score=76.11 Aligned_cols=130 Identities=11% Similarity=0.031 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
.|..+...+...|++++|.++|+.+.+..+.+...+..+...+...|++++|..+++++... .+.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCchHHHHH
Confidence 57788999999999999999999886434567888999999999999999999999999886 2446778899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+...+...|++++|...++++.. . .+.+...+..+...+...|++++ |...++.+...
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALE-L-DPRSAEAWYNLGNAYYKQGDYDE----AIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHHccHHH----HHHHHHHHHcc
Confidence 99999999999999999999988 3 22347788899999999999999 99999998775
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=3.3e-11 Score=98.35 Aligned_cols=223 Identities=13% Similarity=-0.014 Sum_probs=159.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----C-CCCCHHHHHHHHHHHHhcCC-----------------cchH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-----G-LEPDSLSYNILISACIKTKK-----------------LDVT 70 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~t~~~li~~~~~~~~-----------------~~~a 70 (246)
+....++..+...|...|++++|...|++... + .+....++..+...|...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 34456788888889999999999999887532 1 12234578888889999999 9999
Q ss_pred HHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChh
Q 043380 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAMVDALLYSGSIK 146 (246)
Q Consensus 71 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~ 146 (246)
.+.+.+..+..... ........++..+...|...|++++|...+++..+...-.++ ..++..+...|...|+++
T Consensus 203 ~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 203 VEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 99988876531000 011123458888999999999999999999988761100112 237888999999999999
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc
Q 043380 147 VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND 226 (246)
Q Consensus 147 ~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 226 (246)
+ |...+++................++..+...|...|++++|...+++..........+.....++..+...|...
T Consensus 281 ~----A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 281 D----AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp H----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 9 999999887752111011122577888999999999999999999987632111111122233788899999999
Q ss_pred CChhHHHHHHHHHHhh
Q 043380 227 GQVDLALDKLSNTITR 242 (246)
Q Consensus 227 g~~~~a~~~~~~m~~~ 242 (246)
|++++|.+++++..+-
T Consensus 357 g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 357 GGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999987653
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=4.3e-10 Score=84.42 Aligned_cols=153 Identities=11% Similarity=-0.023 Sum_probs=129.7
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLE-PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
.|+..+......+.+.|++++|...|+....-.+ ++...+..+..++...|++++|...|++..+. -+-+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~ 76 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------NYNLA 76 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCSHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CcchH
Confidence 4678888999999999999999999998764334 78888888999999999999999999999986 23356
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-H-------HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-R-------STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (246)
..|..+..+|...|++++|...|++..+ ..|+ . ..|..+...+...|++++ |.+.|+...+.
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~--- 146 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEK----AEENYKHATDV--- 146 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHTTS---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHH----HHHHHHHHHhc---
Confidence 7899999999999999999999999988 4455 4 458888889999999999 99999998764
Q ss_pred CCCCCcc---hhhHHHHHHHHHhcCCh
Q 043380 166 NPGLWPK---PHLYVSMMHELAARVDY 189 (246)
Q Consensus 166 ~~~~~p~---~~~~~~li~~~~~~g~~ 189 (246)
.|+ ...+..+..+|...|+.
T Consensus 147 ----~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 147 ----TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHH
Confidence 565 57788888888887776
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=7.7e-11 Score=95.63 Aligned_cols=220 Identities=9% Similarity=-0.021 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEK-----GLEP-DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
..+|..+...|...|++++|...|++... +..| ...++..+...|...|++++|...+.+..+...+. ....
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~ 124 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKV 124 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--cccc
Confidence 46788899999999999999999987531 1112 25568888899999999999999999887641000 0001
Q ss_pred ccHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCChh
Q 043380 91 PDIFTYATLLMGFRHAKD--------------------LQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGSIK 146 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~ 146 (246)
....++..+...|...|+ +++|...+++.... .+-.|. ..++..+...|...|+++
T Consensus 125 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 204 (406)
T 3sf4_A 125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 204 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHH
Confidence 124488889999999999 99999998876541 222222 457888999999999999
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc
Q 043380 147 VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND 226 (246)
Q Consensus 147 ~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 226 (246)
+ |...+++..+.....+.......++..+...|...|++++|...+++..........+.....++..+...|...
T Consensus 205 ~----A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 280 (406)
T 3sf4_A 205 D----AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280 (406)
T ss_dssp H----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh
Confidence 9 999999987652111111112347888999999999999999999986532111112222233788899999999
Q ss_pred CChhHHHHHHHHHHhh
Q 043380 227 GQVDLALDKLSNTITR 242 (246)
Q Consensus 227 g~~~~a~~~~~~m~~~ 242 (246)
|++++|.+.+++..+.
T Consensus 281 g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 281 QDYEKAIDYHLKHLAI 296 (406)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999999887653
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=7.8e-11 Score=92.78 Aligned_cols=217 Identities=10% Similarity=0.014 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC-c
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPD----SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH-P 91 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-p 91 (246)
...+......+...|++++|...|++..+-.+.+ ...+..+...+...|++++|.+.+++........ +.. .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 81 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---GDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---cccHH
Confidence 3445566778889999999999999876322333 4678889999999999999999999876531000 112 2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCC--------------------hhh
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAMVDALLYSGS--------------------IKV 147 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~ 147 (246)
...++..+...|...|++++|...+++..+...-.++ ..++..+...|...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 3557888999999999999999999987651111122 3478889999999999 899
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc
Q 043380 148 VGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND 226 (246)
Q Consensus 148 ~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 226 (246)
|.+.+++........ +..| ...++..+...+...|++++|...+++..........+.....++..+...+...
T Consensus 162 ----A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 162 ----AVDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp ----HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence 999988765431100 1112 2357888889999999999999999986532111112222223678888899999
Q ss_pred CChhHHHHHHHHHHh
Q 043380 227 GQVDLALDKLSNTIT 241 (246)
Q Consensus 227 g~~~~a~~~~~~m~~ 241 (246)
|++++|.+++++..+
T Consensus 237 g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 237 GEFETASEYYKKTLL 251 (338)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987764
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.27 E-value=4.2e-10 Score=86.38 Aligned_cols=201 Identities=10% Similarity=-0.066 Sum_probs=146.5
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD---SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 89 (246)
-+.++..+-.+...+.+.|++++|...|+.+....+.+ ...+..+..+|.+.|++++|...|++..+.. .+.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~ 85 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QID 85 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCC
Confidence 34566777788889999999999999999987533434 6778889999999999999999999999861 001
Q ss_pred CccHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCC-HHHH-----------------HHHHHHHHhcC
Q 043380 90 HPDIFTYATLLMGFRH--------AKDLQSLLEIVFEMKSCCNLILD-RSTF-----------------TAMVDALLYSG 143 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~~~~~~ 143 (246)
+.....+..+..++.. .|++++|...|++..+ ..|+ .... ..+...|...|
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH---HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH---HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1224567778888888 9999999999999988 3344 2223 55688899999
Q ss_pred ChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc----------CChhHHhhHHHhhCCCCCCCCCchhhh
Q 043380 144 SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR----------VDYDIVKSPYRRMWPDSTGTISPEVQE 213 (246)
Q Consensus 144 ~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (246)
++++ |...|+...+.. |.-......+..+..+|... |++++|...++.+....+..... .
T Consensus 163 ~~~~----A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~ 232 (261)
T 3qky_A 163 LYEA----AAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL---R 232 (261)
T ss_dssp CHHH----HHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH---H
T ss_pred CHHH----HHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH---H
Confidence 9999 999999998861 11112346778888888876 88999999999987654322111 1
Q ss_pred HHHHHHHHHHHhcCChhH
Q 043380 214 EAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 214 ~~~~~li~~~~~~g~~~~ 231 (246)
.+...+-..+...+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 144445555555554443
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=4.4e-11 Score=94.23 Aligned_cols=221 Identities=11% Similarity=-0.026 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCC--------------------cchH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEK--GLEPD----SLSYNILISACIKTKK--------------------LDVT 70 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~----~~t~~~li~~~~~~~~--------------------~~~a 70 (246)
..++..+...|...|++++|...|++... .-.++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 55677777778888888888888776431 01122 3367777788888888 8888
Q ss_pred HHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChh
Q 043380 71 MPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAMVDALLYSGSIK 146 (246)
Q Consensus 71 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~ 146 (246)
.+.+++........ ........++..+...+...|++++|...+++..+...-.++ ..++..+...+...|+++
T Consensus 163 ~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 163 VDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 88887765420000 011122447888889999999999999999987651111112 347888999999999999
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc
Q 043380 147 VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND 226 (246)
Q Consensus 147 ~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 226 (246)
+ |...+++................++..+...|...|++++|...+++..........+.....++..+...|...
T Consensus 241 ~----A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 241 T----ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp H----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9 999999887652111011111467888999999999999999999987532111111222233688899999999
Q ss_pred CChhHHHHHHHHHHhhc
Q 043380 227 GQVDLALDKLSNTITRW 243 (246)
Q Consensus 227 g~~~~a~~~~~~m~~~g 243 (246)
|++++|.+++++..+-.
T Consensus 317 g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp TCHHHHHHHHHHHHHC-
T ss_pred CChHHHHHHHHHHHHHH
Confidence 99999999999887644
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=1.1e-09 Score=88.85 Aligned_cols=215 Identities=6% Similarity=-0.087 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC----CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCC
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEK---GLE----PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~----~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 88 (246)
...+|..+..+|...|++++|...+++... ... ....+++.+...|...|++++|.+.|.+..+...+. ..
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 219 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CC
Confidence 356888899999999999999999987532 111 124578888999999999999999999988641000 00
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc
Q 043380 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 164 (246)
......++..+-.+|...|++++|...|++..+. .+..|+ ..++..+...|...|++++ |...+++......
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~~~ 295 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDK----AHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHH
Confidence 1112348889999999999999999999987651 133244 6778999999999999999 9999998766411
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCC---hhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 165 SNPGLWPKPHLYVSMMHELAARVD---YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 165 ~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.. +-......+..+-..|...|+ +++|..++++.. ..+.. ..++..+...|...|++++|.++++...+
T Consensus 296 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~------~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 296 KA-GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM------LYADL-EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HH-TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT------CHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc------CHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 111122346678888888898 888888888773 12221 23678899999999999999999998876
Q ss_pred hcc
Q 043380 242 RWK 244 (246)
Q Consensus 242 ~g~ 244 (246)
-.+
T Consensus 368 ~~~ 370 (383)
T 3ulq_A 368 VRQ 370 (383)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=3.5e-10 Score=88.37 Aligned_cols=183 Identities=11% Similarity=0.028 Sum_probs=138.3
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEK-------GL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKC 84 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~-~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 84 (246)
.+....++..+...|...|++++|...|++... +- +....++..+...|...|++++|...|++..+...+.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 344567788899999999999999999987642 11 2345678899999999999999999999998741000
Q ss_pred CCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHH
Q 043380 85 SSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC------NLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFG 157 (246)
Q Consensus 85 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 157 (246)
...........+..+...|...|++++|.+++++... . +-.|+ ..++..+...|...|++++ |...++
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~ 219 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE-IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQ----AETLYK 219 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHH----HHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHH----HHHHHH
Confidence 0001233456788999999999999999999999877 2 22344 5678899999999999999 999999
Q ss_pred HHHHhhcC----------------------------------------C--CCCCc-chhhHHHHHHHHHhcCChhHHhh
Q 043380 158 EIVKRVCS----------------------------------------N--PGLWP-KPHLYVSMMHELAARVDYDIVKS 194 (246)
Q Consensus 158 ~m~~~~~~----------------------------------------~--~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 194 (246)
+..+.... . ....| +..++..+..+|...|++++|.+
T Consensus 220 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 220 EILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 98763100 0 00122 34778899999999999999999
Q ss_pred HHHhhC
Q 043380 195 PYRRMW 200 (246)
Q Consensus 195 ~~~~~~ 200 (246)
+|++..
T Consensus 300 ~~~~al 305 (311)
T 3nf1_A 300 LEEAAM 305 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=1e-09 Score=74.50 Aligned_cols=126 Identities=11% Similarity=0.091 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT 133 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 133 (246)
|..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++.. .+ +.+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~ 73 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HC-CCchHHHH
Confidence 444445555555555555555555443 122344445555555555555555555555544 11 11244444
Q ss_pred HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 134 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
.+...+...|++++ |.+.++.+.+. .+.+..++..+...+...|++++|...++++
T Consensus 74 ~l~~~~~~~~~~~~----A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 74 NLGNAYYKQGDYDE----AIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHTTTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHH----HHHHHHHHHHh------CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 55555555555555 55555555443 1123344444445555555555555554443
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=2.6e-09 Score=81.95 Aligned_cols=174 Identities=9% Similarity=0.003 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 043380 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD----IFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 123 (246)
+.+...+-.+...+.+.|++++|...|+++.+. .|+ ...+..+..+|.+.|++++|...|+...+..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 345677777888899999999999999999986 343 6788899999999999999999999998822
Q ss_pred CCCCC-HHHHHHHHHHHHh--------cCChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhH-----------------
Q 043380 124 NLILD-RSTFTAMVDALLY--------SGSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLY----------------- 176 (246)
Q Consensus 124 ~~~p~-~~~~~~li~~~~~--------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~----------------- 176 (246)
.-.|. ...+..+..++.. .|++++ |...|++..+. .|+ ....
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~----A~~~~~~~l~~-------~p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRK----AIEAFQLFIDR-------YPNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH----HHHHHHHHHHH-------CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHH----HHHHHHHHHHH-------CcCchhHHHHHHHHHHHHHHHHHHH
Confidence 11223 4567778888888 999999 99999999987 232 2333
Q ss_pred HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc----------CChhHHHHHHHHHHhhcc
Q 043380 177 VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND----------GQVDLALDKLSNTITRWK 244 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~ 244 (246)
..+...|...|++++|...|+.+....+.... . ..++..+..+|... |++++|.+.|+.+.+.-+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~--~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPW-A--DDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-H--HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCch-H--HHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 55678899999999999999998765433221 1 12677788888866 889999999999887544
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=1.7e-08 Score=81.29 Aligned_cols=214 Identities=8% Similarity=-0.071 Sum_probs=148.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC--
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEK--GLEPDS----LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH-- 90 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-- 90 (246)
.++.+...+...|++++|...+++... .-.++. .+++.+...+...|++++|...+++..+..... +..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---~~~~~ 131 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ---HLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCTTS
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---ccccC
Confidence 566777888899999999999987532 111222 335677788899999999999999987641100 111
Q ss_pred c-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-C-CC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 91 P-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN-L-IL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 91 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~-~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
| ....+..+-..+...|++++|...+++...... . .+ ...++..+...+...|++++ |...+++.......
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~l~~a~~~~~~- 206 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN----ARSQLNRLENLLGN- 206 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHhc-
Confidence 3 345677788889999999999999998766111 1 11 24678888999999999999 99999998765110
Q ss_pred CCCCcchhhH--HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 167 PGLWPKPHLY--VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 167 ~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
++..+..... ...+..+...|++++|...++.......+. +......+..+...+...|++++|.+.+++....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 207 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN--NHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT--CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0111111111 123345779999999999999987544321 1111124677888999999999999999887543
No 76
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=5.2e-09 Score=86.89 Aligned_cols=212 Identities=9% Similarity=-0.058 Sum_probs=147.1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCC
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK---------GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKC 84 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 84 (246)
+.....||.|-..+...|+.++|++.|++... ..+....+|+.+-.+|...|++++|...+++..+...+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 44467899999999999999999999976421 123356789999999999999999999999887532111
Q ss_pred CCCCCCccHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHH---HHhcCChhhhhhHHHHHHHH
Q 043380 85 SSGGFHPDIFTYATLLMGFRH--AKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDA---LLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 85 ~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~---~~~~~~~~~~~~~a~~~~~~ 158 (246)
..........+++.+-.++.. .+++++|.+.|++..+ +.|+ ...+..+... +...++.++ |++.+++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~---~~p~~~~~~~~~~~~~~~l~~~~~~~~----al~~~~~ 200 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE---KKPKNPEFTSGLAIASYRLDNWPPSQN----AIDPLRQ 200 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHSCCCCC----THHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCchHHHH----HHHHHHH
Confidence 111111234566666555544 4579999999999988 5576 5555555444 445677888 9999998
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHHh----cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHH
Q 043380 159 IVKRVCSNPGLWPKPHLYVSMMHELAA----RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234 (246)
Q Consensus 159 m~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 234 (246)
..+. -+.+..++..+...+.. .|++++|.+++++.....+. . . .++..+...|...|++++|.+
T Consensus 201 al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~--~--~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 201 AIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--V--T--DVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp HHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--C--H--HHHHHHHHHHHHTTCHHHHHH
T ss_pred Hhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--H--H--HHHHHHHHHHHHcCchHHHHH
Confidence 8776 12344556555555544 46778999999987654321 1 1 168889999999999999999
Q ss_pred HHHHHHhhcc
Q 043380 235 KLSNTITRWK 244 (246)
Q Consensus 235 ~~~~m~~~g~ 244 (246)
.+++..+..+
T Consensus 269 ~~~~al~~~p 278 (472)
T 4g1t_A 269 LLKKALEYIP 278 (472)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHhCC
Confidence 9998876543
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=2.8e-09 Score=83.20 Aligned_cols=168 Identities=7% Similarity=-0.093 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 043380 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 126 (246)
+.+...+..+-..+...|++++|...|++..+. .| +...+..+...+.+.|++++|...+++... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~ 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QD 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GG
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hh
Confidence 445566677777778888888888888888775 34 456777788888888888888888887766 44
Q ss_pred CCHHHHH-HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC
Q 043380 127 LDRSTFT-AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG 205 (246)
Q Consensus 127 p~~~~~~-~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (246)
|+..... .....+...++.+. |...+++.... -+.+...+..+...+...|++++|...|.++...+++
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~----a~~~l~~al~~------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTP----EIQQLQQQVAE------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHhhcccCc----cHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 6643332 33334666777777 88888877775 2334577788888888888888888888887766543
Q ss_pred CCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 206 TISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
...+. ++..+...|...|+.++|...+++-..
T Consensus 252 ~~~~~----a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQ----TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGGH----HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccch----HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 32222 678888888888888888888776553
No 78
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=4.2e-09 Score=82.27 Aligned_cols=184 Identities=10% Similarity=0.028 Sum_probs=131.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCC-CccHHHHHHHHHHHHccCCHHHHHH
Q 043380 36 AYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF-HPDIFTYATLLMGFRHAKDLQSLLE 114 (246)
Q Consensus 36 a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 114 (246)
|+..|++....-.++..++..+..++...|++++|++++.+.+.. +- .-+...+..++..+.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-------~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-------DEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-------SCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 566666654322566677778889999999999999999998765 22 2367788899999999999999999
Q ss_pred HHHHHHhCCCCCC-----CHHHHHHHHHH--HHhcC--ChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHh
Q 043380 115 IVFEMKSCCNLIL-----DRSTFTAMVDA--LLYSG--SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185 (246)
Q Consensus 115 ~~~~m~~~~~~~p-----~~~~~~~li~~--~~~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~ 185 (246)
.++.|.+ ..| +..+...+..+ ....| +... |..+|+++.+. .|+..+-..++.++.+
T Consensus 158 ~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~----A~~~f~El~~~-------~p~~~~~~lLln~~~~ 223 (310)
T 3mv2_B 158 IFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATS----NFYYYEELSQT-------FPTWKTQLGLLNLHLQ 223 (310)
T ss_dssp HHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH----HHHHHHHHHTT-------SCSHHHHHHHHHHHHH
T ss_pred HHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHH----HHHHHHHHHHh-------CCCcccHHHHHHHHHH
Confidence 9999988 567 35555556655 33334 8999 99999998765 4553344455558999
Q ss_pred cCChhHHhhHHHhhCCCCCCC------CCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 186 RVDYDIVKSPYRRMWPDSTGT------ISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
.|++++|++.++.+....+.. -+.+.. +...+|......|+ +|.++++++++..+
T Consensus 224 ~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~--~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 224 QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT--FLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH--HHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhcccccccccCCCCCHH--HHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 999999999999765431000 022222 55455555555676 88999998887543
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=2.3e-09 Score=80.51 Aligned_cols=172 Identities=13% Similarity=0.041 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 129 (246)
...+..+...+.+.|++++|...|+++.+.. .-.| ....+..+..+|.+.|++++|...|++..+ ..|+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~---~~P~~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR---LNPTH 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCC
Confidence 3455566677888899999999999988751 0011 235777888889999999999999999887 33432
Q ss_pred ----HHHHHHHHHHHh------------------cCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhH----------
Q 043380 130 ----STFTAMVDALLY------------------SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLY---------- 176 (246)
Q Consensus 130 ----~~~~~li~~~~~------------------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~---------- 176 (246)
..+..+..++.. .|++++ |...|+.+.+. -|+. .++
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~l~~-------~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARA----AFSDFSKLVRG-------YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHH----HHHHHHHHHTT-------CTTCTTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH----HHHHHHHHHHH-------CcCChhHHHHHHHHHHHH
Confidence 234444444443 578899 99999999886 2333 222
Q ss_pred -------HHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhccC
Q 043380 177 -------VSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKG 245 (246)
Q Consensus 177 -------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 245 (246)
..+...|...|++++|...|+.+....+.. + ....++..+..+|.+.|++++|.+.++.+...++.
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~-~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT--Q-ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS--H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC--C-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 245567889999999999999987654332 1 11226888999999999999999999999887653
No 80
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=5.2e-09 Score=81.66 Aligned_cols=175 Identities=10% Similarity=-0.036 Sum_probs=139.9
Q ss_pred hHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCC
Q 043380 5 NEIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKC 84 (246)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 84 (246)
+........+.+...+..+...+.+.|++++|...|++....-+-+...+..+...+...|++++|...+++....
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG----
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh----
Confidence 3444444456667778888889999999999999999986444667888999999999999999999999998875
Q ss_pred CCCCCCccHHHHHH-HHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 85 SSGGFHPDIFTYAT-LLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 85 ~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.|+...... ....+...++.++|...+++... ..|+ ...+..+...+...|++++ |...|.+..+.
T Consensus 181 -----~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~----A~~~l~~~l~~ 248 (287)
T 3qou_A 181 -----DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEE----ALELLFGHLRX 248 (287)
T ss_dssp -----GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred -----hcchHHHHHHHHHHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHH----HHHHHHHHHhc
Confidence 465543333 23336677888889999999888 4465 7889999999999999999 99999999987
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 163 VCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 163 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
. | -..+...+..+...+...|+.++|...+++.
T Consensus 249 ~---p-~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 249 D---L-TAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp C---T-TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred c---c-ccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 1 1 1123678999999999999999999888764
No 81
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=5.6e-09 Score=78.38 Aligned_cols=173 Identities=9% Similarity=0.008 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD---SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
++..+..+...+.+.|++++|...|+.+....+.+ ...+..+..+|.+.|++++|...|+++.+. .|+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---------~P~ 73 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---------NPT 73 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------CcC
Confidence 45566677888999999999999999986422222 356788889999999999999999999986 333
Q ss_pred H----HHHHHHHHHHH------------------ccCCHHHHHHHHHHHHhCCCCCCCH-HHH-----------------
Q 043380 93 I----FTYATLLMGFR------------------HAKDLQSLLEIVFEMKSCCNLILDR-STF----------------- 132 (246)
Q Consensus 93 ~----~~~~~ll~~~~------------------~~~~~~~a~~~~~~m~~~~~~~p~~-~~~----------------- 132 (246)
. ..+..+..++. ..|++++|...|+++.+ ..|+. ..+
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 2 23444444443 36789999999999988 34552 222
Q ss_pred HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCC
Q 043380 133 TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI 207 (246)
Q Consensus 133 ~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 207 (246)
..+...|.+.|+++. |...|+.+.+.. |+-......+..+..+|.+.|+.++|.+.++.+....+...
T Consensus 151 ~~~a~~~~~~~~~~~----A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 151 YSVAEYYTERGAWVA----VVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHTCHHH----HHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHcCcHHH----HHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 245667889999999 999999999871 11111236788999999999999999999999876654433
No 82
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.12 E-value=1.4e-08 Score=85.95 Aligned_cols=199 Identities=8% Similarity=-0.031 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-------cCCcc-------hHHHHHH
Q 043380 18 IVMNAVIEASREA----QRI----DEAYQILESVEKGLEPDSLSYNILISACIK-------TKKLD-------VTMPFNE 75 (246)
Q Consensus 18 ~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~t~~~li~~~~~-------~~~~~-------~a~~~~~ 75 (246)
..|...+...-.. ++. ++|..+|++.....+.+...|..+...+.+ .|+++ +|..+|+
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 5666666443332 222 477888988764446678889888888876 68887 8999999
Q ss_pred HHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-H-HHHHHHHHHHHhcCChhhhhhHH
Q 043380 76 QLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-R-STFTAMVDALLYSGSIKVVGLYA 152 (246)
Q Consensus 76 ~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~-~~~~~li~~~~~~~~~~~~~~~a 152 (246)
+..+. +.| +...|..+...+.+.|++++|..+|+...+ +.|+ . ..|..++..+.+.|++++ |
T Consensus 311 ~Al~~--------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~----A 375 (530)
T 2ooe_A 311 RAIST--------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKS----G 375 (530)
T ss_dssp HHTTT--------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHH--------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHH----H
Confidence 99862 244 578999999999999999999999999998 5565 3 579999999999999999 9
Q ss_pred HHHHHHHHHhhcCCCCCCcchhhHHHHHHH-HHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHE-LAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 153 ~~~~~~m~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
..+|+...+. ...+...|...... +...|+.++|..+|+...+..+ ... ..|..++..+.+.|+.++
T Consensus 376 ~~~~~~Al~~------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p----~~~--~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 376 RMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG----DIP--EYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHTC------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT----TCH--HHHHHHHHHHTTTTCHHH
T ss_pred HHHHHHHHhc------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC----CCH--HHHHHHHHHHHhCCCHhh
Confidence 9999998875 11223333332222 3468999999999998765432 112 278999999999999999
Q ss_pred HHHHHHHHHhhc
Q 043380 232 ALDKLSNTITRW 243 (246)
Q Consensus 232 a~~~~~~m~~~g 243 (246)
|..+|++.....
T Consensus 444 Ar~~~~~al~~~ 455 (530)
T 2ooe_A 444 TRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcc
Confidence 999999987753
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.9e-08 Score=78.61 Aligned_cols=169 Identities=9% Similarity=-0.007 Sum_probs=128.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE-KGL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~-~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 91 (246)
.++..++..+..++...|++++|++++.+.. .+- .-+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---------~~ 167 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---------IE 167 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------SC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------Cc
Confidence 4666666788899999999999999998864 321 246778889999999999999999999999875 67
Q ss_pred -----cHHHHHHHHHHH--HccC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 92 -----DIFTYATLLMGF--RHAK--DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 92 -----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+..+...|..++ ...| +..+|..+|+++.. -.|+..+-..++.++...|++++ |.+.++.+.+.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~e----Ae~~L~~l~~~ 240 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAE----AQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHH----HHHHHHHHHSH
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHH----HHHHHHHHHHh
Confidence 356666777663 3334 89999999999977 34663344445558999999999 99999977653
Q ss_pred hcCCCCC-------CcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 163 VCSNPGL-------WPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 163 ~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
. |.+ .-|+.++..+|......|+ +|.++++++....
T Consensus 241 ~---p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 Y---YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp H---HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred c---ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 1 011 3356777677777777787 8899999998654
No 84
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=4.9e-09 Score=75.56 Aligned_cols=163 Identities=10% Similarity=0.010 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF 132 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 132 (246)
.+..+...+...|++++|...|++..+. -+-+...+..+...+...|++++|...|+.... ..|+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~ 76 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYK 76 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHH
Confidence 3455566778888999999999888765 133566788888888899999999999888776 33444333
Q ss_pred HHHHHH-HHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCch
Q 043380 133 TAMVDA-LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210 (246)
Q Consensus 133 ~~li~~-~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (246)
..+... +...+.... |...++...+. .| +...+..+..++...|++++|...|+++....+....+.
T Consensus 77 ~~~~~~~~~~~~~~~~----a~~~~~~al~~-------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 77 SLIAKLELHQQAAESP----ELKRLEQELAA-------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp HHHHHHHHHHHHTSCH----HHHHHHHHHHH-------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred HHHHHHHHHhhcccch----HHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence 222211 222233455 78888887775 34 467888888889999999999999998876543322222
Q ss_pred hhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 211 VQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.+..+...+...|+.++|...|++...
T Consensus 146 ----a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 ----VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ----HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 577888889999999999998887654
No 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.08 E-value=3e-09 Score=86.22 Aligned_cols=209 Identities=9% Similarity=-0.054 Sum_probs=149.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh---CCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCC-CCccHHH
Q 043380 23 VIEASREAQRIDEAYQILESVEK---GLEP---DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG-FHPDIFT 95 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~---~~~~---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~p~~~~ 95 (246)
....+...|++++|...|++... ..+. ...++..+...|...|++++|...+.+..+.-.+. .+ ......+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH--EAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--STTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--ccchHHHHHH
Confidence 44567788999999999988753 1221 34678889999999999999999999987641000 01 1122458
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCC-C
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL-W 170 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~ 170 (246)
++.+-..|...|++++|...|++..+. .+-.+. ..++..+...|...|++++ |.+.+++..+..... +. .
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~----A~~~~~~al~~~~~~-~~~~ 261 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED----AIPYFKRAIAVFEES-NILP 261 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHT-TCGG
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHhh-ccch
Confidence 889999999999999999999987651 111111 3478899999999999999 999999987731100 12 2
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCC---hhHHHHHHHHH
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ---VDLALDKLSNT 239 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m 239 (246)
....++..+..+|...|++++|...+++........-.+.. ...+..+...|...|+ +++|..++++.
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY-LSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 33578899999999999999999999986632111111221 1236678888888998 78888887765
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=8.4e-09 Score=76.49 Aligned_cols=164 Identities=10% Similarity=-0.038 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHH----------------HHHHHHhcCCcchHHHHHHHHHhcc
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNI----------------LISACIKTKKLDVTMPFNEQLKDNG 81 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~ 81 (246)
..+-.....+.+.|++++|...|+......+-+...|.. +..+|.+.|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 334445567788999999999999876422334556666 888999999999999999999986
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCh--hhhhhHHHHHHHH
Q 043380 82 QKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSI--KVVGLYALCIFGE 158 (246)
Q Consensus 82 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~--~~~~~~a~~~~~~ 158 (246)
-+-+...|..+-.+|...|++++|...|++..+ +.|+ ..++..+...|...|+. .. +...++.
T Consensus 84 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~----~~~~~~~ 149 (208)
T 3urz_A 84 -------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKK----LETDYKK 149 (208)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHH----HHHHHC-
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHH----HHHHHHH
Confidence 233577899999999999999999999999988 5576 77888888887666543 33 4555544
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 159 IVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 159 m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
... ..|....+...-.++...|++++|...|++.....
T Consensus 150 ~~~-------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 150 LSS-------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp --C-------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HhC-------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 422 23434445556666777899999999999987654
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=4e-08 Score=79.49 Aligned_cols=212 Identities=10% Similarity=-0.001 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hCCC---C-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCC
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVE---KGLE---P-DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~---~-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 88 (246)
...++..+..+|...|+++.|...+++.. .... + ...+++.+...|...|++++|.+.|.+..+...+ .+
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---~~ 216 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---IQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---cC
Confidence 35678888999999999999999998753 1111 1 2557888999999999999999999998764100 01
Q ss_pred CC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc
Q 043380 89 FH-PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164 (246)
Q Consensus 89 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 164 (246)
-. ....+++.+-.+|...|++++|...|++.... .+.+....++..+...|.+.|++++ |...+++..+...
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~ 292 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK----AFQFIEEGLDHIT 292 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHH
Confidence 11 12457888999999999999999999987651 1222236778899999999999999 9999999888621
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCC---hhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 165 SNPGLWPKPHLYVSMMHELAARVD---YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 165 ~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.. +-......+..+-..+...++ +.+|..+++... ..+.. ...+..+...|...|++++|.+.|+...+
T Consensus 293 ~~-~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~------~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 293 AR-SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN------LHAYI-EACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TT-CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT------CHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC------ChhHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 10 111223456666677777888 788888888742 12222 22677899999999999999999998865
Q ss_pred h
Q 043380 242 R 242 (246)
Q Consensus 242 ~ 242 (246)
-
T Consensus 365 ~ 365 (378)
T 3q15_A 365 A 365 (378)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=5.6e-09 Score=89.18 Aligned_cols=132 Identities=7% Similarity=-0.094 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
+...|..+...+.+.|++++|.+.|++..+-.+.+...+..+..+|...|++++|.+.|++..+. -+.+...
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 93 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGI 93 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHH
Confidence 35566666666666666666666666655333445566666666666666666666666666654 1223456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhc---CChhhhhhHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYS---GSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~---~~~~~~~~~a~~~~~~m~~~ 162 (246)
+..+..+|...|++++|.+.|++..+ ..|+ ...+..+...+... |+.++ |.+.+++..+.
T Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~----A~~~~~~al~~ 157 (568)
T 2vsy_A 94 ALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDV----LSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHH----HHHHHHHHHhc
Confidence 66666666666666666666666655 2333 55566666666666 66666 66666666554
No 89
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=2.6e-08 Score=78.43 Aligned_cols=206 Identities=10% Similarity=0.026 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC-CC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC-
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEK---GL-EP--DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH- 90 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~-~~--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~- 90 (246)
..|+.....|...|++++|.+.|.+... .. .+ -..+|+.+...|...|++++|...|++..+.... .|-.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~---~g~~~ 113 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE---NGTPD 113 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT---TTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCHH
Confidence 3688888889999999999999987531 11 11 1457888999999999999999999988754100 0111
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
.-..+++.+-..|.. |++++|...|++.... .+-.+. ..+++.+...|...|++++ |...|++........
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE----AAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHc
Confidence 124688889999988 9999999999987661 111111 4678889999999999999 999999987752111
Q ss_pred CCCCcc-hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHH
Q 043380 167 PGLWPK-PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDK 235 (246)
Q Consensus 167 ~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 235 (246)
+..+. ..++..+..++...|++++|...|++.. ..+...... .......++.++ ..|+.+.+.++
T Consensus 189 -~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~-e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 189 -ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE-DCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH-HHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred -CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH-HHHHHHHHHHHH-HhcCHHHHHHH
Confidence 11122 2367777788888899999999999987 554433222 112345566666 56777666553
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=7.1e-09 Score=88.53 Aligned_cols=155 Identities=10% Similarity=-0.041 Sum_probs=113.9
Q ss_pred cCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhc
Q 043380 64 TKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYS 142 (246)
Q Consensus 64 ~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 142 (246)
.|++++|.+.|++..+. -+-+...|..+...|...|++++|.+.|++..+ ..|+ ...+..+...|...
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC
Confidence 46789999999998875 233577899999999999999999999999988 4565 78889999999999
Q ss_pred CChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHH
Q 043380 143 GSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEA 222 (246)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 222 (246)
|++++ |.+.+++..+. -..+...+..+..+|...|++++|.+.+++.....+.. . .++..+...
T Consensus 71 g~~~~----A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~--~~~~~l~~~ 134 (568)
T 2vsy_A 71 QRHAE----AAVLLQQASDA------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----P--YITAQLLNW 134 (568)
T ss_dssp TCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H--HHHHHHHHH
T ss_pred CCHHH----HHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H--HHHHHHHHH
Confidence 99999 99999999886 23356788999999999999999999999987543221 1 268889999
Q ss_pred HHhc---CChhHHHHHHHHHHhhccC
Q 043380 223 ALND---GQVDLALDKLSNTITRWKG 245 (246)
Q Consensus 223 ~~~~---g~~~~a~~~~~~m~~~g~~ 245 (246)
+... |+.++|.+.+++..+.++.
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHhhccccHHHHHHHHHHHHhcCCc
Confidence 9999 9999999999998876653
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=3.6e-09 Score=74.33 Aligned_cols=142 Identities=10% Similarity=0.059 Sum_probs=111.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHH
Q 043380 25 EASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104 (246)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~ 104 (246)
..+...|++++|++.++......+-+...+-.+-..|.+.|++++|.+.|++..+. -+-+..+|..+-.+|.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFLGLLYE 76 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence 34556788999999998875322334556777889999999999999999999986 2336789999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHH-HHHHHhhcCCCCCCc-chhhHHHHHH
Q 043380 105 HAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIF-GEIVKRVCSNPGLWP-KPHLYVSMMH 181 (246)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~p-~~~~~~~li~ 181 (246)
..|++++|...|+...+ +.|+ ..+|..+...|...|++++ |.+.| +...+. .| ++.+|.....
T Consensus 77 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~----aa~~~~~~al~l-------~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDG----RAKYWVERAAKL-------FPGSPAVYKLKEQ 142 (150)
T ss_dssp HTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSS----HHHHHHHHHHHH-------STTCHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHh-------CcCCHHHHHHHHH
Confidence 99999999999999988 5676 7889999999999999988 77664 777665 34 4466766666
Q ss_pred HHHhcCC
Q 043380 182 ELAARVD 188 (246)
Q Consensus 182 ~~~~~g~ 188 (246)
.+...|+
T Consensus 143 ll~~~G~ 149 (150)
T 4ga2_A 143 LLDCEGE 149 (150)
T ss_dssp HHHTCCC
T ss_pred HHHHhCc
Confidence 6666654
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=3.2e-09 Score=81.56 Aligned_cols=176 Identities=13% Similarity=0.019 Sum_probs=127.6
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCC-HHHHHHH
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC-----NLILD-RSTFTAM 135 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~l 135 (246)
...|++++|..+|++..+.-.+......+....++..+...|...|++++|...+++..+.. +-.|. ..++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45678888888888877631100001223346689999999999999999999999987621 22333 6678999
Q ss_pred HHHHHhcCChhhhhhHHHHHHHHHHHhhcCC--CCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC---CCCCCch
Q 043380 136 VDALLYSGSIKVVGLYALCIFGEIVKRVCSN--PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS---TGTISPE 210 (246)
Q Consensus 136 i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 210 (246)
...|...|++++ |...|++........ +.-.....++..+...|...|++++|..++++..... .+...|.
T Consensus 92 ~~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 92 AVLYGKRGKYKE----AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHTTTCHHH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHhccHHH----HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999 999999987651100 0112345788999999999999999999999876430 0111222
Q ss_pred hhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 211 VQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
...++..+...|...|++++|.+++++..+.
T Consensus 168 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 168 -VAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2237888999999999999999999988764
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=8.1e-09 Score=90.16 Aligned_cols=183 Identities=8% Similarity=-0.081 Sum_probs=142.5
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHH
Q 043380 28 REAQRIDEAYQILESVE--------KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99 (246)
Q Consensus 28 ~~~g~~~~a~~~~~~~~--------~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 99 (246)
...|++++|++.|++.. ...+.+...+..+..++...|++++|.+.|++..+. -+-+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence 67899999999999876 444556788999999999999999999999999986 23467789999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHH
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 178 (246)
-.+|...|++++|...|++..+ +.|+ ...|..+...|...|++++ ...|++..+. -.-+...|..
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-----~~~~~~al~~------~P~~~~a~~~ 539 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-----HKFYQTVWST------NDGVISAAFG 539 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-----TCHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-----HHHHHHHHHh------CCchHHHHHH
Confidence 9999999999999999999988 5565 7788899999999999876 4556666664 1235578999
Q ss_pred HHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCC--------hhHHHHHHHH
Q 043380 179 MMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ--------VDLALDKLSN 238 (246)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~ 238 (246)
+..++...|++++|...|++....++. .. .+|..+..++...++ +++|.+.+..
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~P~----~~--~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTSRH----FT--TARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTSTT----HH--HHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCcc----cH--HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999998765422 12 267777777766554 4555555543
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=5.9e-09 Score=75.14 Aligned_cols=157 Identities=12% Similarity=0.041 Sum_probs=123.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHH
Q 043380 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 99 (246)
+..+...+.+.|++++|...|++..+.-+.+...+..+...+...|++++|...|++.... .|+...+..+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---------~p~~~~~~~~ 79 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---------YQDNSYKSLI 79 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---------GCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---------cCChHHHHHH
Confidence 4456678889999999999999865333567888999999999999999999999998875 3444333322
Q ss_pred HHH-HHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc---hh
Q 043380 100 LMG-FRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK---PH 174 (246)
Q Consensus 100 l~~-~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~---~~ 174 (246)
... +...++..+|...+++..+ ..|+ ...+..+...+...|++++ |...|+...+. .|+ ..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~-------~p~~~~~~ 145 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEE----ALELLWNILKV-------NLGAQDGE 145 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHTT-------CTTTTTTH
T ss_pred HHHHHHhhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHH----HHHHHHHHHHh-------CcccChHH
Confidence 211 2222333457888888887 5565 7889999999999999999 99999998875 343 56
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
.+..+..++...|+.++|...|++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 8899999999999999999998865
No 95
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.01 E-value=4.1e-07 Score=76.13 Aligned_cols=113 Identities=8% Similarity=-0.045 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHH
Q 043380 106 AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY----SGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMH 181 (246)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~ 181 (246)
.+++++|.+.|++..+ .| +...+..+...|.. .++.++ |.+.|+...+. + +..++..+..
T Consensus 164 ~~d~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~----A~~~~~~a~~~-----~---~~~a~~~lg~ 227 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAE-QG---NVWSCNQLGYMYSRGLGVERNDAI----SAQWYRKSATS-----G---DELGQLHLAD 227 (490)
T ss_dssp CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHH----HHHHHHHHHHT-----T---CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhcCCCCCcCHHH----HHHHHHHHHHC-----C---CHHHHHHHHH
Confidence 4445555555554444 22 34444444444444 455555 55555554443 1 2334444444
Q ss_pred HHHh----cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh----cCChhHHHHHHHHHHhh
Q 043380 182 ELAA----RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN----DGQVDLALDKLSNTITR 242 (246)
Q Consensus 182 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 242 (246)
.|.. .+++++|...|++....+ .+. ++..|-..|.. .+++++|.++|+...+.
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~----a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQG----NSI----AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTTT----CHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC----CHH----HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 4443 455555555555544321 111 34445555555 56666666666655443
No 96
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=4e-08 Score=76.68 Aligned_cols=175 Identities=10% Similarity=-0.032 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCC
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF----TYATLLMGFRHAKDLQSLLEIVFEMKSCCNL-ILD 128 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~ 128 (246)
+...+..+...+++++|..++++..+.. ...|+.. .+..+...+...+++++|...|+.... ... .++
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~ 150 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE------EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGID 150 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccc------cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-Hhccccc
Confidence 3344777889999999999999998751 2334422 344577777888899999999999987 322 233
Q ss_pred ----HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 129 ----RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 129 ----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
..+|+.+...|...|+++. |...|++..+.....++..|.. .++..+...|...|++++|...+++.....
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKK----GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3469999999999999999 9999999886422111222332 588999999999999999999999765211
Q ss_pred --CCCCCchhhhHHHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 043380 204 --TGTISPEVQEEAGHLLMEAALNDGQ-VDLALDKLSNTIT 241 (246)
Q Consensus 204 --~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 241 (246)
.+..... ..+|..+..+|.+.|+ +++|.+.+++...
T Consensus 227 ~~~~~~~~~--~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 227 CRINSMALI--GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTBCTTH--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHcCcHHHH--HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1111111 2278899999999995 6999999987654
No 97
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.00 E-value=6.6e-07 Score=74.89 Aligned_cols=191 Identities=7% Similarity=0.038 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHhccCCCCCCC
Q 043380 17 TIVMNAVIEASRE----AQRIDEAYQILESVEKGLEPDSLSYNILISACIK----TKKLDVTMPFNEQLKDNGQKCSSGG 88 (246)
Q Consensus 17 ~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 88 (246)
+..+..|-..|.. .+++++|.+.|+.... .-+...+..+-..|.. .+++++|.++|++..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------
Confidence 3344444444444 4455555555544431 1233444444444444 44555555555555543
Q ss_pred CCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChhhhhhHHHHHHHHHH
Q 043380 89 FHPDIFTYATLLMGFRH----AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY----SGSIKVVGLYALCIFGEIV 160 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~~a~~~~~~m~ 160 (246)
-+...+..|-..|.. .++.++|...|+...+ .| +...+..+...|.. .+++++ |...|+...
T Consensus 181 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~----A~~~~~~a~ 250 (490)
T 2xm6_A 181 --GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQ----SRVLFSQSA 250 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHH----HHHHHHHHH
T ss_pred --CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHH----HHHHHHHHH
Confidence 134455556666655 6667777777776666 32 34555556666655 566666 776666665
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHh----cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc-----CChhH
Q 043380 161 KRVCSNPGLWPKPHLYVSMMHELAA----RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND-----GQVDL 231 (246)
Q Consensus 161 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~ 231 (246)
+. + +...+..+-..|.. .++.++|...|++....+ .+. ++..|...|... +++++
T Consensus 251 ~~-----~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~----a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 251 EQ-----G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSD----GQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp TT-----T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHH----HHHHHHHHHHHCBTTBCCCHHH
T ss_pred HC-----C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHH----HHHHHHHHHHcCCCCCcCCHHH
Confidence 53 2 33455555555555 666777777776654331 111 455566666665 66777
Q ss_pred HHHHHHHHHhhc
Q 043380 232 ALDKLSNTITRW 243 (246)
Q Consensus 232 a~~~~~~m~~~g 243 (246)
|.++|+...+.|
T Consensus 315 A~~~~~~a~~~~ 326 (490)
T 2xm6_A 315 AISWYTKSAEQG 326 (490)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC
Confidence 777776665543
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=4.1e-08 Score=72.77 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHH----------------HHHHHHccCCHHHHHHH
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYAT----------------LLMGFRHAKDLQSLLEI 115 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~ 115 (246)
.+-.....+...|++++|...|++..+. .|+ ...|.. +-.+|.+.|++++|...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL---------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344455677899999999999999986 454 446666 88899999999999999
Q ss_pred HHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCC--hhHH
Q 043380 116 VFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD--YDIV 192 (246)
Q Consensus 116 ~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a 192 (246)
|++..+ +.|+ ...+..+...|...|++++ |...|++..+. -+-+..++..+..+|...|+ ...+
T Consensus 77 ~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 77 YKELLQ---KAPNNVDCLEACAEMQVCRGQEKD----ALRMYEKILQL------EADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc------CCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 999988 5565 7889999999999999999 99999999986 22345788888888776654 3455
Q ss_pred hhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 193 KSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
...+..... .+|. ...+..+-.++...|++++|...|++..+..+
T Consensus 144 ~~~~~~~~~-----~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 144 ETDYKKLSS-----PTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHC---C-----CCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhC-----CCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 666665532 1221 22445556677778999999999998876543
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=2.8e-08 Score=77.64 Aligned_cols=188 Identities=11% Similarity=0.005 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHccCCHH
Q 043380 32 RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQ 110 (246)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~ 110 (246)
++++|.+.|++. ...|...|++++|.+.|.+..+...+ .+-.++ ..+|+.+-.+|...|+++
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKK---AGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477777777665 44677899999999999988764100 011222 568999999999999999
Q ss_pred HHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhc-CChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhHHHHHHHHH
Q 043380 111 SLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYS-GSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLYVSMMHELA 184 (246)
Q Consensus 111 ~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~li~~~~ 184 (246)
+|...|++.... .|-.+. ..+++.+...|... |++++ |+..|++..+..... +-.+. ..++..+...+.
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~----A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK----AIDCYELAGEWYAQD-QSVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH----HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHH
Confidence 999999987661 111111 45788999999996 99999 999999987752100 00011 357888999999
Q ss_pred hcCChhHHhhHHHhhCCCCCCCCCch-hhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 185 ARVDYDIVKSPYRRMWPDSTGTISPE-VQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 185 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
..|++++|...|++.....+...... ....+|..+..++...|++++|.+.|++..+
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999875443221110 1111567788889999999999999987654
No 100
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.97 E-value=5.5e-08 Score=78.30 Aligned_cols=214 Identities=10% Similarity=-0.044 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC--C-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCC
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEK-----GLE--P-DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~--~-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 89 (246)
.+++.+...+...|++++|...+++... +.. | ....+..+...+...|++++|...+++.....-.. +.
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 170 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QP 170 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---Cc
Confidence 3466778889999999999999987531 221 2 23456778888999999999999999988652110 11
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHH----HHHHHHHhcCChhhhhhHHHHHHHHHHHhhc
Q 043380 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFT----AMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~----~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 164 (246)
.....+|..+...+...|++++|...+++......-..+ ..... ..+..+...|++++ |...++......
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----A~~~~~~a~~~~- 245 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA----AANWLRHTAKPE- 245 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHSCCCC-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH----HHHHHHhCCCCC-
Confidence 113457888889999999999999999988651111111 11111 23345779999999 999998876531
Q ss_pred CCCCC-CcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 165 SNPGL-WPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 165 ~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
++. ......+..+...+...|++++|...++.........-.+.....++..+..++...|+.++|.+.+++...
T Consensus 246 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 246 --FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp --CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 110 111235677888999999999999999987532111011111112566778889999999999999988764
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=7.1e-09 Score=81.65 Aligned_cols=202 Identities=10% Similarity=0.009 Sum_probs=140.0
Q ss_pred cCCHHHHHHHHHHHHh-------CCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC-ccHHHHH
Q 043380 30 AQRIDEAYQILESVEK-------GLEPDS----LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH-PDIFTYA 97 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~~-------~~~~~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-p~~~~~~ 97 (246)
.|++++|.+++++..+ +..++. ..|+.....|...|++++|...|.+..+...+. +-. .-..+|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~a~~~~ 80 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN---RSLFHAAKAFE 80 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH
Confidence 4667788888776532 112332 256777788889999999999999887641000 111 1245899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-c
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-K 172 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~ 172 (246)
.+...|...|++++|...|++..+. .|-... ..+++.+...|.. |++++ |+..|++........ +-.+ .
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~----A~~~~~~Al~~~~~~-~~~~~~ 154 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK----AVHLYQQAAAVFENE-ERLRQA 154 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH----HHHHHHHHHHHHHHT-TCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH----HHHHHHHHHHHHHhC-CChhHH
Confidence 9999999999999999999976551 121111 4578888889988 99999 999999887652100 1111 1
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
..++..+...|...|++++|...|++................++..+..++...|++++|.+.|++..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 46788899999999999999999998764211111111112256677778888899999999999875
No 102
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.93 E-value=6.6e-08 Score=64.50 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
...|..+...+.+.|++++|.+.|+++.+..+.+..++..+...+...|++++|..+|+++... .+.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHH
Confidence 6778889999999999999999999886434567888999999999999999999999999885 24467788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHh
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLY 141 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 141 (246)
..+...|...|++++|...|+++.. ..|+ ...+..+...+..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999988 3354 5556555555544
No 103
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.93 E-value=2.5e-08 Score=72.99 Aligned_cols=167 Identities=11% Similarity=-0.024 Sum_probs=118.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHc
Q 043380 27 SREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRH 105 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~ 105 (246)
....|++++|.++++.+..........+..+-..+...|++++|...+++..+.... .+..| ...++..+-..|..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK---SGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHH
Confidence 356799999999666665322345678899999999999999999999998873100 01222 34578889999999
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCC-C-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHH
Q 043380 106 AKDLQSLLEIVFEMKSC---CNLIL-D-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180 (246)
Q Consensus 106 ~~~~~~a~~~~~~m~~~---~~~~p-~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li 180 (246)
.|++++|...+++.... .+-.| . ...+..+...+...|++++ |...+++.............-..++..+.
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAG----ARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999987662 12122 1 4567888999999999999 99999987654110001111234567888
Q ss_pred HHHHhcCChhHHhhHHHhhC
Q 043380 181 HELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~~~ 200 (246)
.++...|++++|...+++..
T Consensus 155 ~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHH
Confidence 89999999999999888765
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=2e-07 Score=68.77 Aligned_cols=130 Identities=9% Similarity=-0.077 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHH
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYA 97 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 97 (246)
..+..+...+...|++++|...|++.. .|+...|..+...|...|++++|.+.|++.... .+.+...|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~ 75 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHH
Confidence 345677788889999999999998774 678899999999999999999999999999986 244677899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC-------------CCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCN-------------LILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+..+|...|++++|...|+...+... ..|+ ...+..+...|...|++++ |...|+...+.
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~ 150 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK----AEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH----HHHHHHHHHHc
Confidence 999999999999999999999988211 1122 3778899999999999999 99999998875
No 105
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.92 E-value=1.7e-07 Score=75.76 Aligned_cols=208 Identities=13% Similarity=-0.049 Sum_probs=147.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHH
Q 043380 23 VIEASREAQRIDEAYQILESVEKG--LEPD----SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFT 95 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~ 95 (246)
.-..+...|++++|...|++...- ..++ ..++..+...|...|+++.|...+.+..+...+. .+..+ ...+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 184 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH--PLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--TTCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--CCchhhHHHH
Confidence 344567889999999999887521 1233 4568888999999999999999999987641000 01122 2458
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
++.+-.+|...|++++|.+.|++..+. .+-.+. ..+++.+...|...|++++ |.+.|++........ +.+.
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~----A~~~~~~al~~~~~~-~~~~ 259 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM----AVEHFQKAAKVSREK-VPDL 259 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHH-CGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHhh-CChh
Confidence 889999999999999999999887651 111111 4578889999999999999 999999987721000 1122
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ---VDLALDKLSN 238 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~ 238 (246)
...++..+..+|.+.|++++|...+++........-.+.. ...+..+-..|...|+ +++|..+++.
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-KELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH-HHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 3578889999999999999999999986642211111111 1246677777778888 7888887765
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=5e-07 Score=70.40 Aligned_cols=173 Identities=9% Similarity=0.014 Sum_probs=123.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 22 AVIEASREAQRIDEAYQILESVEKGL--EPDS----LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
..+..+.+.|++++|.++++...... .|+. ..+..+...+...+++++|...|.+......+. ....-...+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--ccHHHHHHH
Confidence 34678889999999999999876422 2231 123346666777789999999999998741100 000011347
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC---C-CCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSC---C-NLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---~-~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
|+.+...|...|++++|...|++..+. . +..+. ..+|..+...|...|++++ |...+++..+.........
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~----A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE----SLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHcCcHH
Confidence 999999999999999999999988731 1 22233 3478899999999999999 9999998776421111111
Q ss_pred cchhhHHHHHHHHHhcCC-hhHHhhHHHhhC
Q 043380 171 PKPHLYVSMMHELAARVD-YDIVKSPYRRMW 200 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~ 200 (246)
.-..+|..+-.+|.+.|+ +++|.+.+++..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 225788999999999995 688888887654
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=1.2e-07 Score=69.92 Aligned_cols=136 Identities=10% Similarity=-0.077 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
..+..+...+...|++++|...|++.. .|+...|..+...|...|++++ |...|+...+. ...+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~------~~~~~ 71 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTE----AEKAFTRSINR------DKHLA 71 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------Cccch
Confidence 345667777889999999999998764 3678899999999999999999 99999998886 23456
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCC----------CchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTI----------SPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
..+..+..+|...|++++|...|++.....+... .......++..+..+|...|++++|.+.|+...+..
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7889999999999999999999998775433211 000111368889999999999999999999887654
Q ss_pred c
Q 043380 244 K 244 (246)
Q Consensus 244 ~ 244 (246)
+
T Consensus 152 p 152 (213)
T 1hh8_A 152 S 152 (213)
T ss_dssp C
T ss_pred c
Confidence 4
No 108
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.88 E-value=6.7e-07 Score=77.65 Aligned_cols=216 Identities=9% Similarity=-0.024 Sum_probs=158.8
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCC--CCC
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAY-QILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS--GGF 89 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~ 89 (246)
.+-+...|-.....+.+.|+.++|. ++|+.....++.+...|-..+...-+.|+++.|.++|+++.+....... ..-
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3457778888888888899999996 9999876556667777888888888999999999999999874000000 000
Q ss_pred Cc------------cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-C-CCCCHHHHHHHHHHHHhcCChhhhhhHHHHH
Q 043380 90 HP------------DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC-N-LILDRSTFTAMVDALLYSGSIKVVGLYALCI 155 (246)
Q Consensus 90 ~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~-~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~ 155 (246)
.| ....|...+....+.|+.+.|..+|..... . + ..+......+.+...+ .++.+. |..+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~~-~~d~e~----Ar~i 492 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYHI-SKDTKT----ACKV 492 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHTT-TSCCHH----HHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHh-CCCHHH----HHHH
Confidence 13 234688888888899999999999999988 4 2 2233333334443222 345899 9999
Q ss_pred HHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHH
Q 043380 156 FGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDK 235 (246)
Q Consensus 156 ~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 235 (246)
|+...+. ..-+...|...+......|+.+.|..+|+........ +.-....|...+..-.+.|+.+.+.++
T Consensus 493 fe~~Lk~------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 493 LELGLKY------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp HHHHHHH------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHH------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999886 3335566778888888899999999999998765321 111223799999999999999999999
Q ss_pred HHHHHhhc
Q 043380 236 LSNTITRW 243 (246)
Q Consensus 236 ~~~m~~~g 243 (246)
.+++.+.-
T Consensus 564 ~~R~~~~~ 571 (679)
T 4e6h_A 564 EKRFFEKF 571 (679)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99998654
No 109
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.87 E-value=5.9e-07 Score=74.41 Aligned_cols=132 Identities=7% Similarity=-0.106 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 16 NTIVMNAVIEASREA--QRIDEAYQILESVEKGLEPDSLSYNILISA---CIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 16 ~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~t~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
.+.+++.+-.++.+. +++++|.+.|++...--+-+...+..+..+ +...++.++|.+.+++..+. -+
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p 206 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NP 206 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CS
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CC
Confidence 355666666666654 468999999998753223445555554444 34567888999999988875 13
Q ss_pred ccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 91 PDIFTYATLLMGFRH----AKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 91 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+..++..+...+.. .+++++|.+++++... ..|+ ..++..+...|...|++++ |...+++..+.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~---~~~~~~~~~~~lg~~~~~~~~~~~----A~~~~~~al~~ 276 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE---KAPGVTDVLRSAAKFYRRKDEPDK----AIELLKKALEY 276 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHcCchHH----HHHHHHHHHHh
Confidence 345566555555443 4677889999998877 3454 7788889999999999999 99999887765
No 110
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.87 E-value=9.9e-08 Score=64.19 Aligned_cols=121 Identities=7% Similarity=-0.085 Sum_probs=102.0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
+.+...+..+...+...|++++|...|+......+.+...+..+...+...|++++|...+.+.... .+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~ 80 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--------DPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--------CccCH
Confidence 3456788888999999999999999999876434567888999999999999999999999999986 23457
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCh
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSI 145 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~ 145 (246)
..+..+...+...|++++|...|++..+ ..| +...+..+...+...|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKALE---LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999988 345 467788888888877765
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=1.5e-07 Score=66.28 Aligned_cols=131 Identities=7% Similarity=-0.056 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
...+..+...+...|++++|...|+......+.+...+..+...+...|++++|...+.+.... .+.+...|
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHH
Confidence 4567788889999999999999999876444667889999999999999999999999999986 24467789
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHH--HHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTF--TAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~--~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..+..++...|++++|...|++... ..|+ ...+ ..+...+...|++++ |...+......
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~ 146 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFER----AIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH----HHHcccchHHH
Confidence 9999999999999999999999988 3343 4444 344445778899999 99999876553
No 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=2.2e-07 Score=72.43 Aligned_cols=177 Identities=9% Similarity=-0.040 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD----IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN-- 124 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-- 124 (246)
...+...+..+...|++++|.+.+.+..+.. ...++ ...+..+...+...|++++|...++.......
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE------EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc------cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 3456667888899999999999999888751 11111 12344566677889999999999999875111
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc--chhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 125 LILD--RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP--KPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 125 ~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
..+. ..+|+.+...|...|++++ |...|++..+..... +..+ ...++..+..+|...|++++|...+++..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~----A~~~~~kal~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKK----GIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHhc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 1122 4588999999999999999 999999987431101 1111 22688999999999999999999999865
Q ss_pred CCC--CCCCCchhhhHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043380 201 PDS--TGTISPEVQEEAGHLLMEAALNDGQVDLA-LDKLSNTI 240 (246)
Q Consensus 201 ~~~--~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 240 (246)
... .+.... ...+|..+...|.+.|++++| ...++...
T Consensus 224 ~~~~~~~~~~~--~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 224 EISCRINSMAL--IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTBCSS--HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCcHHH--HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 321 111111 123788899999999999999 77777654
No 113
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=5.8e-08 Score=70.97 Aligned_cols=167 Identities=8% Similarity=-0.102 Sum_probs=119.0
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHH
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVD 137 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~ 137 (246)
...|++++|.++++.+... ......++..+-..+...|++++|...+++.... .+..|. ..++..+..
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4678999999966555442 2345678999999999999999999999876551 223333 567888999
Q ss_pred HHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc--chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHH
Q 043380 138 ALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP--KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEA 215 (246)
Q Consensus 138 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 215 (246)
.|...|++++ |.+.+++........ +-.| ...++..+...+...|++++|...+++........-.+.....+
T Consensus 75 ~~~~~g~~~~----A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 75 VERMAGNWDA----ARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHTTCHHH----HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHH----HHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999 999999876642110 1112 23568888899999999999999999865321111122222235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 216 GHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 216 ~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+..+...+...|++++|.+.+++..+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 78888999999999999999988765
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=5e-07 Score=70.40 Aligned_cols=175 Identities=10% Similarity=0.048 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDS------LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP 91 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 91 (246)
..+...+..+...|++++|.+.++......+... ..+..+...+...|++++|...+.+......+ ...+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~ 151 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT----GIDV 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC----SSCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc----CCch
Confidence 3445667788899999999999987653222222 22344556677888999999999998764110 1122
Q ss_pred c--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhc
Q 043380 92 D--IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-----RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVC 164 (246)
Q Consensus 92 ~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 164 (246)
. ..+|+.+-..|...|++++|...|++........|+ ..+|+.+...|...|++++ |...+++..+...
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~----Al~~~~kal~~~~ 227 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE----SLYQVNKAIEISC 227 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHH----HHHHHHHHHHHHH
Confidence 2 458999999999999999999999988731011222 2588999999999999999 9999999876521
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCChhHH-hhHHHhhC
Q 043380 165 SNPGLWPKPHLYVSMMHELAARVDYDIV-KSPYRRMW 200 (246)
Q Consensus 165 ~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 200 (246)
.......-..+|..+..+|...|++++| ...+++..
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0001111257889999999999999999 77677643
No 115
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.84 E-value=5.8e-07 Score=82.35 Aligned_cols=181 Identities=12% Similarity=0.168 Sum_probs=119.1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
-++.+|..+-.++...|++++|.+-|... .|...|..++.+|.+.|++++|.+++...++. .++..
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---------~~e~~ 1168 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---------ARESY 1168 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------ccccc
Confidence 34677888889999999999999888553 56677888899999999999999988877765 23333
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
..+.+..+|++.+++++...+. .. |+...|..+...|-..|++++ |..+|....
T Consensus 1169 Idt~LafaYAKl~rleele~fI---~~-----~n~ad~~~iGd~le~eg~Yee----A~~~Y~kA~-------------- 1222 (1630)
T 1xi4_A 1169 VETELIFALAKTNRLAELEEFI---NG-----PNNAHIQQVGDRCYDEKMYDA----AKLLYNNVS-------------- 1222 (1630)
T ss_pred ccHHHHHHHHhhcCHHHHHHHH---hC-----CCHHHHHHHHHHHHhcCCHHH----HHHHHHhhh--------------
Confidence 3334777777777776533332 11 344555566666777777777 776666641
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHhhCCCCC--------------------C---CCCchhhhHHHHHHHHHHHhcCChhH
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRRMWPDST--------------------G---TISPEVQEEAGHLLMEAALNDGQVDL 231 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--------------------~---~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (246)
.|..+..+|.+.|++++|.+.+++...... + ...++ .+..++..|.+.|.+++
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~d----eLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD----ELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHH----HHHHHHHHHHHcCCHHH
Confidence 456666666666666666666665532210 0 00111 35567777788888888
Q ss_pred HHHHHHHH
Q 043380 232 ALDKLSNT 239 (246)
Q Consensus 232 a~~~~~~m 239 (246)
|+++++.-
T Consensus 1299 AI~LlE~a 1306 (1630)
T 1xi4_A 1299 LITMLEAA 1306 (1630)
T ss_pred HHHHHHHH
Confidence 88887654
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.84 E-value=1.1e-08 Score=71.87 Aligned_cols=141 Identities=10% Similarity=-0.026 Sum_probs=108.6
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMV 136 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 136 (246)
..+...|++++|.+.+...... .|+ ...+..+-..|.+.|++++|.+.|++..+ +.|+ ..+|..+.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg 72 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLG 72 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3445567889999998887764 444 44677888999999999999999999988 5576 88899999
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhH-HHhhCCCCCCCCCchhhhH
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSP-YRRMWPDSTGTISPEVQEE 214 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 214 (246)
..|...|++++ |...|+...+. .| +..++..+...|...|++++|.+. +++..+.++.. +.
T Consensus 73 ~~~~~~~~~~~----A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~--~~---- 135 (150)
T 4ga2_A 73 LLYELEENTDK----AVECYRRSVEL-------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS--PA---- 135 (150)
T ss_dssp HHHHHTTCHHH----HHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC--HH----
T ss_pred HHHHHcCchHH----HHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC--HH----
Confidence 99999999999 99999999886 34 467899999999999999876654 56655433221 11
Q ss_pred HHHHHHHHHHhcCC
Q 043380 215 AGHLLMEAALNDGQ 228 (246)
Q Consensus 215 ~~~~li~~~~~~g~ 228 (246)
+|......+...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 57766666666664
No 117
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=3.2e-08 Score=86.42 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=129.4
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALL 140 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 140 (246)
...+++++|.+.+++..+..........+.+...+..+..+|...|++++|...|++..+ ..|+ ...|..+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHHHH
Confidence 678999999999999982100000001234567888999999999999999999999988 4565 788999999999
Q ss_pred hcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHH
Q 043380 141 YSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLL 219 (246)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (246)
..|++++ |...|++..+. .| +...+..+..+|...|++++ ...|++....++.. . .+|..+
T Consensus 479 ~~g~~~~----A~~~~~~al~l-------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~----~--~a~~~l 540 (681)
T 2pzi_A 479 LTGDYDS----ATKHFTEVLDT-------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV----I--SAAFGL 540 (681)
T ss_dssp HHTCHHH----HHHHHHHHHHH-------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC----H--HHHHHH
T ss_pred HcCCHHH----HHHHHHHHHHh-------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch----H--HHHHHH
Confidence 9999999 99999999886 34 45788999999999999999 99999987654322 1 278899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhc
Q 043380 220 MEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 220 i~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
..++.+.|++++|.+.|++..+..
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTS 564 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred HHHHHHcCCHHHHHHHHHhhcccC
Confidence 999999999999999999876543
No 118
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=1.7e-07 Score=63.38 Aligned_cols=120 Identities=9% Similarity=-0.007 Sum_probs=97.1
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
.+.++..|..+...+.+.|++++|...|+......+.+...+..+...+...|++++|...+++..+. .+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~ 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--------EPTF 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCc
Confidence 45677888889999999999999999999876544557888999999999999999999999999885 2345
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSG 143 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~ 143 (246)
...+..+..++...|++++|.+.|++..+ ..|+ ...+..+...+...|
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALD---LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCGGGTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhc
Confidence 77888899999999999999999999887 3344 455666666665544
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=1e-06 Score=65.42 Aligned_cols=175 Identities=10% Similarity=-0.032 Sum_probs=103.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccC----CHHH
Q 043380 36 AYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK----DLQS 111 (246)
Q Consensus 36 a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~ 111 (246)
|.+.|+..-. .-+...+..+-..|...+++++|..+|++..+. + +...+..|-..|.. + ++++
T Consensus 5 A~~~~~~aa~--~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g---~~~a~~~lg~~y~~-~g~~~~~~~ 71 (212)
T 3rjv_A 5 PGSQYQQQAE--AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------G---DGDALALLAQLKIR-NPQQADYPQ 71 (212)
T ss_dssp TTHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHTTS-STTSCCHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------C---CHHHHHHHHHHHHc-CCCCCCHHH
Confidence 4555555432 245566666666666677777777777776664 2 34455556666655 5 6777
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChhhhhhHHHHHHHHHHHhhcCCCCCC-cchhhHHHHHHHHHh-
Q 043380 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLY----SGSIKVVGLYALCIFGEIVKRVCSNPGLW-PKPHLYVSMMHELAA- 185 (246)
Q Consensus 112 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-p~~~~~~~li~~~~~- 185 (246)
|.+.|+...+ .| +...+..|-..|.. .+++++ |...|+...+. +.. .+...+..|-..|..
T Consensus 72 A~~~~~~A~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~----A~~~~~~A~~~-----~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 72 ARQLAEKAVE-AG---SKSGEIVLARVLVNRQAGATDVAH----AITLLQDAARD-----SESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHHHHHHHH-TT---CHHHHHHHHHHHTCGGGSSCCHHH----HHHHHHHHTSS-----TTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCccCHHH----HHHHHHHHHHc-----CCCcchHHHHHHHHHHHHcC
Confidence 7777777666 33 45556666666665 666777 77777766554 211 014566666666666
Q ss_pred ---cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhhc
Q 043380 186 ---RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND-G-----QVDLALDKLSNTITRW 243 (246)
Q Consensus 186 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 243 (246)
.+++++|...|++..... + . +. ++..|-..|... | ++++|.++|+.-.+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~-~-~-~~----a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLS-R-T-GY----AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTS-C-T-TH----HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcC-C-C-HH----HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666777777777764331 1 1 11 345555555543 2 6777777777666554
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.78 E-value=5.6e-07 Score=60.74 Aligned_cols=119 Identities=12% Similarity=-0.001 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
+.+...|..+...+...|++++|...|++..+. .+.+...+..+..+|...|++++|...+++..+ ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~ 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ---LEP 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---HCT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCC
Confidence 456677889999999999999999999999875 234678899999999999999999999999988 334
Q ss_pred C-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcC
Q 043380 128 D-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV 187 (246)
Q Consensus 128 ~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g 187 (246)
+ ...+..+...+...|++++ |.+.|++..+. ..-+...+..+..++...|
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTK----AMDVYQKALDL------DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CGGGTHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhHHH----HHHHHHHHHHh------CCCchHHHHHHHHHHHHhc
Confidence 4 7889999999999999999 99999999886 1223456666666666554
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=4.7e-07 Score=60.25 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHH
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 130 (246)
...|..+...+...|++++|.++|+++... .+.+..++..+...+...|++++|...++++.. . .+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~ 78 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPNNAE 78 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-h-CCccHH
Confidence 567888899999999999999999999886 234677899999999999999999999999988 3 223578
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHh
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA 185 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~ 185 (246)
++..+...|...|++++ |...|+...+. .+.+...+..+...+..
T Consensus 79 ~~~~la~~~~~~~~~~~----A~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDE----AIEYYQKALEL------DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHH----HHHHHHHHHHh------CCCcHHHHHHHHHHHHh
Confidence 88999999999999999 99999999886 12334555555555443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.78 E-value=4.9e-07 Score=63.63 Aligned_cols=127 Identities=9% Similarity=0.038 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HH
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RS 130 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~ 130 (246)
..+..+...+...|++++|...|.+..+. .+.+..++..+..++...|++++|...+++... ..|+ ..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~ 82 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIK 82 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHH
Confidence 45667777788888888888888888875 233577788888888888888888888888877 3343 67
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhH--HHHHHHHHhcCChhHHhhHHHhh
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY--VSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
.+..+...+...|++++ |...|++..+. ...+...+ ..+...+...|++++|...+...
T Consensus 83 ~~~~~a~~~~~~~~~~~----A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 83 GYYRRAASNMALGKFRA----ALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHTTCHHH----HHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHH----HHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 78888888888888888 88888888775 11233333 33444467778888888777754
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=4e-07 Score=61.78 Aligned_cols=108 Identities=6% Similarity=-0.107 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
...+...-..|.+.|++++|++.|++..+-.+.+...|..+..+|.+.|++++|...|++.++. -+.+...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--------DSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--------hhhhhHHH
Confidence 3567778889999999999999998875434667888999999999999999999999999885 23457789
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHH
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAM 135 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 135 (246)
..+-.+|...|++++|.+.|+...+ +.|+ ...+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~---l~P~~~~a~~~l 121 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQ---VDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH---HCcCCHHHHHHH
Confidence 9999999999999999999999988 5676 4444444
No 124
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.77 E-value=9.1e-07 Score=81.11 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=136.1
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 25 EASR-EAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 25 ~~~~-~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
..+. ..+++++|.++.++.. +..+|..+-.++...|++++|.+.|.+. -|...|..++.+|
T Consensus 1083 ~VLie~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1083 QVLIEHIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAA 1144 (1630)
T ss_pred HHHHHHHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHH
Confidence 3344 7789999999998663 3678999999999999999999999553 4566888899999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~ 183 (246)
.+.|++++|.+.+...++ . .+++...+.++.+|++.+++++ ...+. + .|+...|..+-..|
T Consensus 1145 ~~lGkyEEAIeyL~mArk-~--~~e~~Idt~LafaYAKl~rlee----le~fI----~--------~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAE----LEEFI----N--------GPNNAHIQQVGDRC 1205 (1630)
T ss_pred HHcCCHHHHHHHHHHHHh-h--cccccccHHHHHHHHhhcCHHH----HHHHH----h--------CCCHHHHHHHHHHH
Confidence 999999999999998877 3 3555555569999999988877 55442 2 24566777899999
Q ss_pred HhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 184 AARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
...|++++|..+|.... .|..+..+|++.|++++|.+.++.-.
T Consensus 1206 e~eg~YeeA~~~Y~kA~--------------ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNVS--------------NFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HhcCCHHHHHHHHHhhh--------------HHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 99999999999999962 58999999999999999999987653
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=1.5e-07 Score=66.17 Aligned_cols=104 Identities=9% Similarity=-0.227 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
+...+..+-..+.+.|++++|...|+....--+.+...|..+-.+|...|++++|...|++.... -+-+...
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--------~P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--------GKNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------CCCCcHH
Confidence 44566677778888888888888888876433557778888888888888888888888888875 1234567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHH
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 130 (246)
|..+-.+|...|++++|...|+...+ +.|+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~---l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQ---HSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCHH
Confidence 88888888888888888888888887 456654
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.76 E-value=4.7e-08 Score=75.99 Aligned_cols=195 Identities=8% Similarity=-0.049 Sum_probs=129.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
.+...+..+...+.+.|++++|...|+......+.+...|..+..+|.+.|++++|...+++..+. -+-+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~ 73 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------DGQSVK 73 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CTTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHH
Confidence 456778888999999999999999999876433557888999999999999999999999999875 234577
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR-STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.+..+..+|...|++++|...|+...+ +.|+. ..+...+....+ ... + .-+...... ....+.
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~---~~~----~-~~~~~~~~~-----~~~~~~ 137 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALR---IAK----K-KRWNSIEER-----RIHQES 137 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHH---HHH----H-HHHHHHHHT-----CCCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHH---HHH----H-HHHHHHHHH-----HHhhhH
Confidence 899999999999999999999998877 22321 111111211111 111 1 112222232 233343
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALND-GQVDLALDKLSNTIT 241 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 241 (246)
.....+ ..+ ..|+.++|.+.++......++ +. .....+-..+.+. +.+++|.++|....+
T Consensus 138 ~i~~~l-~~l-~~~~~~~A~~~~~~al~~~p~----~~--~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 138 ELHSYL-TRL-IAAERERELEECQRNHEGHED----DG--HIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHH-HHH-HHHHHHHHHTTTSGGGTTTSC----HH--HHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHH-HHH-HHHHHHHHHHHHHhhhccccc----hh--hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333 333 368889999888887654321 11 1333444444444 668889999887654
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=8e-06 Score=60.49 Aligned_cols=161 Identities=6% Similarity=-0.123 Sum_probs=130.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHhccCCCCCCCCC
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK----KLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
-++..+..|-..|...+++++|.+.|+..-. .-+...+..|-..|.. + ++++|..+|++..+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---------- 82 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---------- 82 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------
Confidence 5777888999999999999999999998753 2466777788888877 6 899999999999875
Q ss_pred ccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh----cCChhhhhhHHHHHHHHH
Q 043380 91 PDIFTYATLLMGFRH----AKDLQSLLEIVFEMKSCCNLILD---RSTFTAMVDALLY----SGSIKVVGLYALCIFGEI 159 (246)
Q Consensus 91 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~~~~~~~~~~a~~~~~~m 159 (246)
-+...+..|-..|.. .+++++|.+.|++..+ .| |+ ...+..|-..|.. .+++++ |...|+..
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~----A~~~~~~A 155 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DS--ESDAAVDAQMLLGLIYASGVHGPEDDVK----ASEYFKGS 155 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-ST--TSHHHHHHHHHHHHHHHHTSSSSCCHHH----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cC--CCcchHHHHHHHHHHHHcCCCCCCCHHH----HHHHHHHH
Confidence 256677888888877 8899999999999988 44 43 6778888888988 888999 99999998
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHhc-C-----ChhHHhhHHHhhCCC
Q 043380 160 VKRVCSNPGLWPKPHLYVSMMHELAAR-V-----DYDIVKSPYRRMWPD 202 (246)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~ 202 (246)
.+. .++...+..|-..|... | +.++|...|+.....
T Consensus 156 ~~~-------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL-------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT-------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc-------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 774 23455677777777653 3 889999999887543
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=6.1e-07 Score=60.19 Aligned_cols=117 Identities=5% Similarity=-0.041 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-H
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-R 129 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~ 129 (246)
...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...++.... ..|+ .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 80 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC---IDPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---cCccCH
Confidence 344555555666666666666666666553 122445556666666666666666666666555 2233 5
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCC
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD 188 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 188 (246)
..+..+...|...|++++ |...|+...+. .+.+...+..+..++...|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVE----AVAYYKKALEL------DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHH----HHHHHHHHHhc------CccchHHHHHHHHHHHHHhc
Confidence 555566666666666666 66666665554 11233445555555555444
No 129
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.73 E-value=3e-07 Score=61.83 Aligned_cols=116 Identities=7% Similarity=0.008 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD---- 92 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~---- 92 (246)
...|..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++..... ....++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-----RENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-----cccchhHHHH
Confidence 46788889999999999999999998764446678889999999999999999999999998761 000111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALL 140 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 140 (246)
..+|..+..++...|++++|.+.|+...+ ..|+......+.....
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLA---EHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 67889999999999999999999999988 4467665555544433
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=1.9e-07 Score=67.01 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=63.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH-HHccC
Q 043380 29 EAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG-FRHAK 107 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~ 107 (246)
..|++++|...|+......+.+...|..+...|...|++++|...|++..+. .+.+...+..+..+ +...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAALATVLYYQAS 93 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcC
Confidence 3455556666665543222445555666666666666666666666666554 12234455555555 55556
Q ss_pred CH--HHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 108 DL--QSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 108 ~~--~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
++ ++|...|+.... ..|+ ...+..+...|...|++++ |...|+...+.
T Consensus 94 ~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~ 144 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALA---LDSNEITALMLLASDAFMQANYAQ----AIELWQKVMDL 144 (177)
T ss_dssp TCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcccHHH----HHHHHHHHHhh
Confidence 65 666666666555 2233 4555556666666666666 66666665553
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=5.1e-07 Score=71.97 Aligned_cols=132 Identities=8% Similarity=-0.031 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD---------------SLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
+...|..+-..|.+.|++++|...|++...-.+.+ ...|..+..+|.+.|++++|...|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678889999999999999999999875322333 588999999999999999999999999986
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHH-HHHHHH
Q 043380 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYA-LCIFGE 158 (246)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a-~~~~~~ 158 (246)
-+.+...|..+-.+|...|++++|...|++..+ +.|+ ...+..+...+...|+.++ | ...|+.
T Consensus 226 --------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~----a~~~~~~~ 290 (336)
T 1p5q_A 226 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLA----REKKLYAN 290 (336)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred --------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 234678999999999999999999999999988 5565 7788899999999999998 7 456666
Q ss_pred HHHh
Q 043380 159 IVKR 162 (246)
Q Consensus 159 m~~~ 162 (246)
|...
T Consensus 291 ~~~~ 294 (336)
T 1p5q_A 291 MFER 294 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 132
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.3e-06 Score=71.60 Aligned_cols=208 Identities=8% Similarity=-0.062 Sum_probs=145.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCC
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPD-----------------SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 86 (246)
...+.+.|++++|++.|..+.+..+.+ ...+..+...|...|++++|.+++.++...-
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~----- 85 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM----- 85 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-----
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Confidence 456788999999999998875311111 1247789999999999999999999887641
Q ss_pred CCCCccH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHH
Q 043380 87 GGFHPDI----FTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 87 ~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
+-.++. .+.+.+-..+...|+.+.|..++...... .+..+. ..++..+...|...|++++ |..++++
T Consensus 86 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~l~~ 160 (434)
T 4b4t_Q 86 -MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKD----SLALIND 160 (434)
T ss_dssp -HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHH----HHHHHHH
T ss_pred -HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHH----HHHHHHH
Confidence 111222 23334444455678999999998876431 233344 5678899999999999999 9999999
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC-CCCchhhhHHHHHHHHHHHhcCChhHHHHHHH
Q 043380 159 IVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG-TISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237 (246)
Q Consensus 159 m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 237 (246)
..........-.....++..++..|...|++++|..++++....... ..++......+..+...+...|++++|...|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 87652211111122467899999999999999999999876532111 12333333467778888889999999999887
Q ss_pred HHHh
Q 043380 238 NTIT 241 (246)
Q Consensus 238 ~m~~ 241 (246)
+..+
T Consensus 241 ~a~~ 244 (434)
T 4b4t_Q 241 ESFE 244 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 133
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=1.6e-06 Score=57.02 Aligned_cols=109 Identities=10% Similarity=-0.074 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
++..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++..+. .+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CcccHHH
Confidence 45678888999999999999999999876444567888999999999999999999999999886 2335778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHH
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAM 135 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 135 (246)
+..+..++...|++++|.+.++...+ ..|+ ...+..+
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l 112 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLK---HEANNPQLKEGL 112 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH---cCCCCHHHHHHH
Confidence 89999999999999999999999988 4455 4444443
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.9e-06 Score=66.43 Aligned_cols=198 Identities=7% Similarity=-0.132 Sum_probs=140.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHhcCCcchHHHHHHHHHhccCCCC------C-CC----CC
Q 043380 29 EAQRIDEAYQILESVEKGLEPDSLSYNIL-------ISACIKTKKLDVTMPFNEQLKDNGQKCS------S-GG----FH 90 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~~~~~~~t~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~~~------~-~~----~~ 90 (246)
+.++.+.|.+.|.+...--+-....|..+ ...+.+.++..++...+..-.+. .+. . .| +.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccccc
Confidence 68999999999999864445667888877 56666666666776666665542 110 0 11 11
Q ss_pred c----cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 91 P----DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 91 p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
+ -...+-.+...+...|++++|.++|+.+.. . .|+......+...+.+.+++++ |+..|+.....
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-~--~p~~~~~~~~a~l~~~~~r~~d----A~~~l~~a~~~---- 164 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-A--GSEHLVAWMKAVVYGAAERWTD----VIDQVKSAGKW---- 164 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-T--TCHHHHHHHHHHHHHHTTCHHH----HHHHHTTGGGC----
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCchHHHHHHHHHHHHcCCHHH----HHHHHHHhhcc----
Confidence 0 122445567778889999999999999887 3 3764466677779999999999 99999844332
Q ss_pred CCCCcc--hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 167 PGLWPK--PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 167 ~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
. .|. ...+..+-.++...|++++|...|++..... ..|............++.+.|+.++|..+|+++....+
T Consensus 165 -~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~---~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 165 -P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP---AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp -S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST---TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred -C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 1 121 2467888899999999999999999986322 21221122566788889999999999999999987654
No 135
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.68 E-value=1.6e-07 Score=65.59 Aligned_cols=147 Identities=10% Similarity=-0.028 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD----RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
..++..+-..|...|++++|...+++......-.++ ..++..+...+...|++++ |.+.++...........
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFET----ASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhCC
Confidence 457888888999999999999999987761111112 2478889999999999999 99999997765211111
Q ss_pred CCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
......++..+...+...|++++|...+++........-.+.....++..+...+...|++++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 111246788888999999999999999988653211111122223368889999999999999999999877643
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.66 E-value=5e-07 Score=72.02 Aligned_cols=129 Identities=11% Similarity=-0.005 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----------------HHHHHHHHHHHHccCCHHHHH
Q 043380 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD----------------IFTYATLLMGFRHAKDLQSLL 113 (246)
Q Consensus 50 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~ 113 (246)
+...|..+-..|.+.|++++|...|++.... .|+ ...|..+-.+|.+.|++++|.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 216 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW---------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4667888999999999999999999999986 333 479999999999999999999
Q ss_pred HHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHH
Q 043380 114 EIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIV 192 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 192 (246)
..|++..+ +.|+ ...|..+..+|...|++++ |...|+...+. -+-+..++..+..++...|+.++|
T Consensus 217 ~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~----A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 217 ESCNKALE---LDSNNEKGLSRRGEAHLAVNDFEL----ARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hCCCcHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 4455 8889999999999999999 99999999886 233567888999999999999988
Q ss_pred -hhHHHhhC
Q 043380 193 -KSPYRRMW 200 (246)
Q Consensus 193 -~~~~~~~~ 200 (246)
..++..|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44555543
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1.7e-06 Score=58.62 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-H
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-R 129 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~ 129 (246)
...+......|.+.|++++|.+.|++.++. -+.+...|..+-.+|.+.|++++|...|+...+ +.|+ .
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhh
Confidence 356778889999999999999999999986 244678999999999999999999999999988 5566 7
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..|..+..+|...|++++ |.+.|+...+.
T Consensus 82 ~a~~~lg~~~~~~~~~~~----A~~~~~~al~l 110 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSK----AQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHH----HHHHHHHHHHH
Confidence 889999999999999999 99999999886
No 138
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=3e-05 Score=60.81 Aligned_cols=206 Identities=7% Similarity=-0.072 Sum_probs=156.6
Q ss_pred CcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----Hhc---CCcchHHHHHHHHHhccCCC
Q 043380 14 KLNTIVMNAVIEASREAQ--RIDEAYQILESVEKGLEPDSLSYNILISAC----IKT---KKLDVTMPFNEQLKDNGQKC 84 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~t~~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~~ 84 (246)
+-+...||.--.++...| +++++++.++.+....+-+...|+.--..+ ... +++++++++++++.+.
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~---- 139 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS---- 139 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----
Confidence 345567888777888888 999999999988654466777887655555 555 7899999999999986
Q ss_pred CCCCCCccHHHHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC------hhhhhhHHHHHH
Q 043380 85 SSGGFHPDIFTYATLLMGFRHAKDLQ--SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS------IKVVGLYALCIF 156 (246)
Q Consensus 85 ~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~------~~~~~~~a~~~~ 156 (246)
-+-|..+|+.---.+.+.|+++ ++++.++.+.+ ... -|-..|+.-...+...+. +++ +++.+
T Consensus 140 ----~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e----El~~~ 209 (306)
T 3dra_A 140 ----DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-TDL-KNNSAWSHRFFLLFSKKHLATDNTIDE----ELNYV 209 (306)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH----HHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHhccccchhhhHHH----HHHHH
Confidence 3457788888888888888888 99999999998 322 346777766666666666 788 99999
Q ss_pred HHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChh-HHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHH
Q 043380 157 GEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD-IVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDK 235 (246)
Q Consensus 157 ~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 235 (246)
+..... -.-|...|+-+-..+.+.|+.. .+..+..++...+..... ...++..+.+.|.+.|+.++|.++
T Consensus 210 ~~aI~~------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 210 KDKIVK------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT---SSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHH------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHccCCHHHHHHH
Confidence 999887 3456788999988998888854 455677776543211111 122788899999999999999999
Q ss_pred HHHHHhh
Q 043380 236 LSNTITR 242 (246)
Q Consensus 236 ~~~m~~~ 242 (246)
++.+.++
T Consensus 281 ~~~l~~~ 287 (306)
T 3dra_A 281 YDLLKSK 287 (306)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998763
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.7e-06 Score=58.25 Aligned_cols=98 Identities=11% Similarity=-0.021 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
+...|..+-..+.+.|++++|...|++..+-.+.+...|..+..++.+.|++++|...|++..+. -+.+...
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHH
Confidence 35567788889999999999999998876434667888999999999999999999999999986 2335778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
|..+-.++...|++++|...|++..+
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 89999999999999999999999887
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=9e-07 Score=63.38 Aligned_cols=123 Identities=6% Similarity=-0.009 Sum_probs=99.1
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHH-H
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDA-L 139 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~ 139 (246)
...|++++|...+++..+. .+.+...|..+...|...|++++|...|+.... ..| +...+..+... +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ---LRGENAELYAALATVLY 89 (177)
T ss_dssp C-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 4568899999999998876 244678999999999999999999999999988 445 46778888888 7
Q ss_pred HhcCCh--hhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC
Q 043380 140 LYSGSI--KVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG 205 (246)
Q Consensus 140 ~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (246)
...|++ ++ |...++...+. -+.+...+..+...|...|++++|...|+......+.
T Consensus 90 ~~~~~~~~~~----A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 90 YQASQHMTAQ----TRAMIDKALAL------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHTTTCCCHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HhcCCcchHH----HHHHHHHHHHh------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 789998 99 99999999886 2334678888999999999999999999998765443
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=8.1e-07 Score=62.32 Aligned_cols=98 Identities=8% Similarity=-0.098 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-
Q 043380 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD- 128 (246)
Q Consensus 50 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~- 128 (246)
+...+..+-..+.+.|++++|...|++.... -+-+...|..+-.+|...|++++|...|++..+ +.|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~ 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKND 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCC
Confidence 4567888888999999999999999999986 234678999999999999999999999999998 5566
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...|..+..+|...|++++ |...|+...+.
T Consensus 104 ~~~~~~lg~~~~~lg~~~e----A~~~~~~al~l 133 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLK----AKECFELVIQH 133 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh
Confidence 7788999999999999999 99999999986
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=1.2e-06 Score=59.35 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD---- 92 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~---- 92 (246)
...+..+-..+.+.|++++|++.|++...-.+.+...|+.+-.+|...|++++|++.+++.++.. ....++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-----RETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-----cccchhhHHH
Confidence 45677889999999999999999998764335678889999999999999999999999988641 001111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTA 134 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 134 (246)
..+|..+-.++...|++++|.+.|++... ..||..+...
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~~~~~~~~~ 121 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLS---EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcCHHHHHH
Confidence 24788888899999999999999999887 4577655443
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=9.5e-08 Score=70.01 Aligned_cols=161 Identities=8% Similarity=-0.032 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc---------
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP--------- 91 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p--------- 91 (246)
+....+....|+++++.+.|+.-..........+..+...+...|++++|...|.+..... .-.|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~ 81 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF------IHTEEWDDQILLD 81 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------TTCTTCCCHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------hcccccchhhHHH
Confidence 3344455556677777766654322112345667788888899999999999999998751 0111
Q ss_pred -----cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC
Q 043380 92 -----DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165 (246)
Q Consensus 92 -----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (246)
....|..+..+|...|++++|...++.... +.|+ ...+..+..+|...|++++ |...|+...+.
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~----A~~~~~~al~~--- 151 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEE----AKENLYKAASL--- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcccHHH----HHHHHHHHHHH---
Confidence 127888899999999999999999999988 3454 7888899999999999999 99999998876
Q ss_pred CCCCCcchhhHHHHHHHHHhcCChhHHh-hHHHhhC
Q 043380 166 NPGLWPKPHLYVSMMHELAARVDYDIVK-SPYRRMW 200 (246)
Q Consensus 166 ~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~~~ 200 (246)
-+-+...+..+..++...++.+++. ..+..+.
T Consensus 152 ---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 152 ---NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp ---STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2234577788888888888777766 5555554
No 144
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.58 E-value=2.7e-05 Score=64.53 Aligned_cols=192 Identities=9% Similarity=-0.022 Sum_probs=123.5
Q ss_pred cCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHhccCCCCCC
Q 043380 15 LNTIVMNAVIEASREAQ---RIDEAYQILESVEKGLEPDSLSYNILISACIKT----KKLDVTMPFNEQLKDNGQKCSSG 87 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~ 87 (246)
.++..+..|-..|.+.| +.++|++.|+..-..-.++...+..+-..|... +++++|..+|++.. .
T Consensus 174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~------- 245 (452)
T 3e4b_A 174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P------- 245 (452)
T ss_dssp TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-------
T ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-------
Confidence 33446777777777788 778888888776533356666556666666554 57788888888776 4
Q ss_pred CCCccHHHHHHHHHH-H--HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-----ChhhhhhHHHHHHHHH
Q 043380 88 GFHPDIFTYATLLMG-F--RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG-----SIKVVGLYALCIFGEI 159 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~-----~~~~~~~~a~~~~~~m 159 (246)
| +...+..|-.. | ...+++++|.+.|++..+ .| +...+..|-..|. .| ++++ |.+.|+..
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~----A~~~~~~A 313 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKA----AEAHFEKA 313 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHH----HHHHHHTT
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHH----HHHHHHHH
Confidence 2 22334444444 3 457788888888888877 55 5666666666666 44 7777 88777766
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHh----cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh----cCChhH
Q 043380 160 VKRVCSNPGLWPKPHLYVSMMHELAA----RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN----DGQVDL 231 (246)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 231 (246)
. . | +...+..|-..|.. ..++++|...|+.....+ ... +...|-..|.. ..++++
T Consensus 314 a-~-----g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~------A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 314 V-G-----R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNS------ADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp T-T-----T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTT------HHHHHHHHHHSCTTBCCCHHH
T ss_pred h-C-----C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHH------HHHHHHHHHHhCCCCCCCHHH
Confidence 4 3 2 44556666666555 337888888888776543 111 45556666653 457788
Q ss_pred HHHHHHHHHhhc
Q 043380 232 ALDKLSNTITRW 243 (246)
Q Consensus 232 a~~~~~~m~~~g 243 (246)
|..+|+.-.+.|
T Consensus 377 A~~~~~~A~~~g 388 (452)
T 3e4b_A 377 AYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 888887766655
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=9.9e-07 Score=61.58 Aligned_cols=98 Identities=9% Similarity=-0.137 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-
Q 043380 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD- 128 (246)
Q Consensus 50 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~- 128 (246)
+...+..+...+...|++++|...|++.... -+.+...|..+-.+|...|++++|...|++... +.|+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~ 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXE 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTC
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCC
Confidence 4445566666677777777777777777664 133556666677777777777777777777766 3344
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...+..+..+|...|++++ |...|+...+.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~ 118 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAE----AESGLFLAQEL 118 (148)
T ss_dssp THHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHH----HHHHHHHHHHH
Confidence 5566667777777777777 77777776654
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=1e-06 Score=61.57 Aligned_cols=99 Identities=7% Similarity=-0.133 Sum_probs=85.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
.+...+..+...+.+.|++++|...|+.....-+.+...|..+-.+|...|++++|...|++.... -+.+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~ 90 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--------DIXEPR 90 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCch
Confidence 355667778889999999999999999876444668889999999999999999999999999986 233567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
.|..+-.+|...|++++|...|+...+
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999999999999999887
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=2.3e-06 Score=60.46 Aligned_cols=100 Identities=7% Similarity=-0.097 Sum_probs=87.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccH
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
..+...|..+...+.+.|++++|++.|++...-.+.+...|..+..+|...|++++|...|++..+. -+-+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 79 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--------DPKYS 79 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCH
Confidence 3456778889999999999999999999876434568889999999999999999999999999986 23357
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
..|..+-.+|...|++++|...|++..+
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7899999999999999999999999988
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=9.7e-07 Score=57.55 Aligned_cols=97 Identities=8% Similarity=-0.085 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc--cHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP--DIF 94 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~ 94 (246)
...|..+...+.+.|++++|...|+...+..+.+...|..+...+...|++++|...|++..+. .+. +..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~ 77 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------IEDEYNKD 77 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------SCCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccchHH
Confidence 4455666667777777777777777765333455666777777777777777777777777764 122 466
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHA-KDLQSLLEIVFEMKS 121 (246)
Q Consensus 95 ~~~~ll~~~~~~-~~~~~a~~~~~~m~~ 121 (246)
.+..+..++... |++++|.+.++....
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 777777777777 777777777777766
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.54 E-value=2.9e-06 Score=61.98 Aligned_cols=132 Identities=10% Similarity=-0.035 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDS----------------LSYNILISACIKTKKLDVTMPFNEQLKD 79 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~t~~~li~~~~~~~~~~~a~~~~~~m~~ 79 (246)
....+..+...+.+.|++++|...|++...-.+.+. ..|..+..+|...|++++|...+++..+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345677788889999999999999998764223333 7888899999999999999999999998
Q ss_pred ccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHH-HHHH
Q 043380 80 NGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYAL-CIFG 157 (246)
Q Consensus 80 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~-~~~~ 157 (246)
. -+.+...|..+..+|...|++++|...|+...+ +.|+ ...+..+...+...++..+ +. ..|.
T Consensus 117 ~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~----~~~~~~~ 181 (198)
T 2fbn_A 117 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYELCVNKLKEARK----KDKLTFG 181 (198)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred h--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 6 244677899999999999999999999999988 4565 6778888888888887777 65 5555
Q ss_pred HHHHh
Q 043380 158 EIVKR 162 (246)
Q Consensus 158 ~m~~~ 162 (246)
.+...
T Consensus 182 ~~f~~ 186 (198)
T 2fbn_A 182 GMFDK 186 (198)
T ss_dssp -----
T ss_pred HHhcc
Confidence 55443
No 150
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.54 E-value=1e-06 Score=61.38 Aligned_cols=143 Identities=8% Similarity=-0.082 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCC
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC---CNLILD 128 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~ 128 (246)
.++..+...+...|++++|...+.+..+...+. .....-..++..+...+...|++++|...+++.... .+-.+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 457777888888999999999998887641000 000011247888999999999999999999987651 111111
Q ss_pred -HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 129 -RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 129 -~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
...+..+...+...|++++ |...+++..+.............++..+...+...|++++|.+.+++..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEK----AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4567888899999999999 9999998765421110111124678888899999999999999998764
No 151
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=2.9e-06 Score=70.90 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=108.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 043380 58 ISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMV 136 (246)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 136 (246)
...+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|.+.+++..+ +.|+ ...|..+.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg 81 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRA 81 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 34456789999999999999986 233578999999999999999999999999998 4565 78899999
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-chhhHHHHHHH--HHhcCChhHHhhHHH-----------hhCCC
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP-KPHLYVSMMHE--LAARVDYDIVKSPYR-----------RMWPD 202 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~a~~~~~-----------~~~~~ 202 (246)
.+|...|++++ |.+.|++..+. .| +...+..+..+ +.+.|++++|.+.++ +....
T Consensus 82 ~~~~~~g~~~e----A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~ 150 (477)
T 1wao_1 82 ASNMALGKFRA----ALRDYETVVKV-------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTI 150 (477)
T ss_dssp HHHHHHTCHHH----HHHHHHHHHHH-------STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCC
T ss_pred HHHHHcCCHHH----HHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccc
Confidence 99999999999 99999999886 23 33455555555 888899999999998 33322
Q ss_pred CCCCCCch-----hhhHHHHHHHHHHHhcCChh
Q 043380 203 STGTISPE-----VQEEAGHLLMEAALNDGQVD 230 (246)
Q Consensus 203 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~~ 230 (246)
......+. ........++..+...+.+.
T Consensus 151 ~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~ 183 (477)
T 1wao_1 151 EDEYSGPKLEDGKVTISFMKELMQWYKDQKKLH 183 (477)
T ss_dssp CTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCC
T ss_pred cccccccccccccccHHHHHHHHHHHHcCCCCC
Confidence 22222221 11224566777777776654
No 152
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.53 E-value=1.6e-06 Score=58.19 Aligned_cols=113 Identities=11% Similarity=0.099 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCC
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL--ILD 128 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~p~ 128 (246)
...|..+...+...|++++|...|.+.... .+.+...+..+...|...|++++|...++.... ..- .++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ 74 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hccccchh
Confidence 356777778888888899999998888875 234567788888888888999999888888776 211 112
Q ss_pred ----HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 043380 129 ----RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183 (246)
Q Consensus 129 ----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~ 183 (246)
..++..+...|...|++++ |.+.|+...+. .|+......+..+.
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~~~-------~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKD----AIHFYNKSLAE-------HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHh-------CCCHHHHHHHHHHH
Confidence 5677788888888889888 88888888776 34555444444433
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=9e-07 Score=61.15 Aligned_cols=98 Identities=9% Similarity=-0.132 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
+...+..+...+.+.|++++|...|+.....-+.+...|..+..+|...|++++|...|++.... -+.+...
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--------DINEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCcHH
Confidence 34455566677888888888888888875433557777888888888888888888888888875 1334567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
|..+-.+|...|++++|...|+...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888888888888888888777
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.52 E-value=4.1e-06 Score=56.97 Aligned_cols=99 Identities=6% Similarity=-0.121 Sum_probs=61.9
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 15 LNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
.++..|..+...+.+.|++++|...|+....-.+.+...|..+..++...|++++|...+++.... .+.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------DGQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CchhHH
Confidence 455666666666667777777777766654323445566666666666667777777766666654 122455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
.|..+..+|...|++++|...|+...+
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666666666555
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=4.5e-06 Score=56.08 Aligned_cols=97 Identities=5% Similarity=-0.049 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-H
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-R 129 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~ 129 (246)
...|..+-..+.+.|++++|...|++..+. -+.+...|..+..+|.+.|++++|...|+...+ +.|+ .
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~ 72 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcH
Confidence 456778888899999999999999999986 244678999999999999999999999999988 4565 7
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..|..+..++...|++++ |...|+...+.
T Consensus 73 ~~~~~lg~~~~~~~~~~~----A~~~~~~al~~ 101 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYAS----ALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHH----HHHHHHHHHHh
Confidence 889999999999999999 99999998876
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=6.7e-06 Score=56.45 Aligned_cols=111 Identities=7% Similarity=-0.090 Sum_probs=90.1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCC
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD----SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF 89 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 89 (246)
+.+...+..+...+.+.|++++|.+.|+...+. .|+ ...|..+..+|...+++++|...+++..+. .
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 95 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------D 95 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------T
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------C
Confidence 457788889999999999999999999987643 455 678888899999999999999999999875 2
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 043380 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMV 136 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 136 (246)
+.+...+..+..+|...|++++|...|++... ..|+ ...+..+.
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~ 140 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS---LEPKNKVFQEALR 140 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCSSCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHH
Confidence 33577888899999999999999999999988 4465 44444333
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=9e-06 Score=55.79 Aligned_cols=99 Identities=9% Similarity=-0.111 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 043380 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD----IFTYATLLMGFRHAKDLQSLLEIVFEMKSCC 123 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 123 (246)
+.+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|...++....
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-- 93 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-- 93 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--
Confidence 346778888999999999999999999999975 465 67888999999999999999999999888
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 124 NLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 124 ~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..| +...+..+...|...|++++ |...|++....
T Consensus 94 -~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~ 128 (148)
T 2dba_A 94 -KDGGDVKALYRRSQALEKLGRLDQ----AVLDLQRCVSL 128 (148)
T ss_dssp -HTSCCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH
T ss_pred -hCccCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc
Confidence 345 47788899999999999999 99999999886
No 158
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.49 E-value=2.7e-05 Score=64.61 Aligned_cols=189 Identities=11% Similarity=0.028 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhcCCHH----HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHhccCCCCCCCC
Q 043380 17 TIVMNAVIEASREAQRID----EAYQILESVEKGLEPDSLSYNILISACIKTK---KLDVTMPFNEQLKDNGQKCSSGGF 89 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~----~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~ 89 (246)
+..+..|...|...+.++ .+..+++.... .+...+..|-..|...| +.++|.++|++..+.|
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------- 209 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------- 209 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--------
Confidence 334555666666666444 44444444432 33348888888999999 9999999999999873
Q ss_pred CccHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-H--HhcCChhhhhhHHHHHHHHHHHh
Q 043380 90 HPDIFTYATLLMGFRHA----KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDA-L--LYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~--~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.++...+..|-..|... +++++|...|+.... -+...+..|-.. | ...+++++ |.+.|+...+.
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~-----g~~~a~~~Lg~~~~~~~~~~d~~~----A~~~~~~Aa~~ 280 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAP-----GYPASWVSLAQLLYDFPELGDVEQ----MMKYLDNGRAA 280 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGG-----GSTHHHHHHHHHHHHSGGGCCHHH----HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHC
Confidence 55666666777777554 799999999998761 245566666665 3 56899999 99999998876
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcC-----ChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh----cCChhHHH
Q 043380 163 VCSNPGLWPKPHLYVSMMHELAARV-----DYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN----DGQVDLAL 233 (246)
Q Consensus 163 ~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 233 (246)
| +...+..|-..|. .| ++++|.+.|++.. . +. +. ++..|-..|.. ..++++|.
T Consensus 281 -----g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~--g~--~~----A~~~Lg~~y~~G~g~~~d~~~A~ 342 (452)
T 3e4b_A 281 -----D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G--RE--VA----ADYYLGQIYRRGYLGKVYPQKAL 342 (452)
T ss_dssp -----T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T--TC--HH----HHHHHHHHHHTTTTSSCCHHHHH
T ss_pred -----C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C--CC--HH----HHHHHHHHHHCCCCCCcCHHHHH
Confidence 4 5667777777776 55 9999999999986 2 22 11 56667777766 34899999
Q ss_pred HHHHHHHhhc
Q 043380 234 DKLSNTITRW 243 (246)
Q Consensus 234 ~~~~~m~~~g 243 (246)
++|+.-.+.|
T Consensus 343 ~~~~~Aa~~g 352 (452)
T 3e4b_A 343 DHLLTAARNG 352 (452)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHhhC
Confidence 9999887765
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=4.2e-06 Score=56.92 Aligned_cols=100 Identities=8% Similarity=-0.070 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 043380 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL 127 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 127 (246)
+.+...|..+...+...|++++|...|.+.... .+.+...|..+..++...|++++|...++...+ +.|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p 74 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDG 74 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCT
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCc
Confidence 346677888888888888888888888888875 233567888888888888888888888888877 335
Q ss_pred C-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 128 D-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 128 ~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+ ...+..+...|...|++++ |...|+.....
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~~ 106 (137)
T 3q49_B 75 QSVKAHFFLGQCQLEMESYDE----AIANLQRAYSL 106 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHH
Confidence 4 6778888888888888888 88888887765
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.49 E-value=2.8e-06 Score=57.60 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC--
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-- 128 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-- 128 (246)
...+..+...+.+.|++++|++.|.+.++. -+-+...|+.+-.+|...|++++|.+.++...+ +.|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~ 76 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccc
Confidence 346778889999999999999999999986 234577899999999999999999999998876 2222
Q ss_pred ------HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHH
Q 043380 129 ------RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178 (246)
Q Consensus 129 ------~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 178 (246)
..+|..+...+...|++++ |++.|+..... .||..+...
T Consensus 77 ~~~~~~a~~~~~lg~~~~~~~~~~~----A~~~~~kal~~-------~~~~~~~~~ 121 (127)
T 4gcn_A 77 ADYKLIAKAMSRAGNAFQKQNDLSL----AVQWFHRSLSE-------FRDPELVKK 121 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------SCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhh-------CcCHHHHHH
Confidence 2467888889999999999 99999998775 466554443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=4.5e-06 Score=58.98 Aligned_cols=99 Identities=9% Similarity=-0.021 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
.+...|..+...+...|++++|...|++..+. .+-+...|..+..+|.+.|++++|...|++..+ +.|+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~ 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCC
Confidence 35667888889999999999999999999986 233678899999999999999999999999988 4465
Q ss_pred -HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 129 -RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 129 -~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...|..+...|...|++++ |...|++..+.
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~ 108 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKG----AKEAYEKGIEA 108 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHH----HHHHHHHHHHh
Confidence 7889999999999999999 99999998886
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=7.7e-06 Score=53.58 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-
Q 043380 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD- 128 (246)
Q Consensus 50 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~- 128 (246)
+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++... ..|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---hCccc
Confidence 4567788888999999999999999999886 234677889999999999999999999999988 3454
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...+..+...+...|++++ |.+.++...+.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~ 101 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEE----AKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHH----HHHHHHHHHHc
Confidence 7888999999999999999 99999998765
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.6e-06 Score=71.07 Aligned_cols=179 Identities=9% Similarity=-0.028 Sum_probs=121.2
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCCC---------ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH---------PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---------p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 129 (246)
+.+.+.|++++|.+.|.++.+..-...+.... .....+..+...|...|++++|.+++.......+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45677899999999999998763111100000 011357889999999999999999999876622222332
Q ss_pred H----HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC
Q 043380 130 S----TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG 205 (246)
Q Consensus 130 ~----~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 205 (246)
. +.+.+-..+...|+++. |..+++..............-..++..+...|...|++++|..+++++...-.+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDD----QIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHH----HHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 2 23334444555788999 999998876642211112223467888999999999999999999976522111
Q ss_pred CCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 206 TISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.........+|..++..|...|++++|..+++....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 112222234789999999999999999999987764
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=3e-06 Score=55.12 Aligned_cols=98 Identities=8% Similarity=-0.061 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
...+..+...+...|++++|...|++..+ ..| +...+..+...+...|++++ |...|++..+. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~a~~~------~~~ 72 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ---LDPEESKYWLMKGKALYNLERYEE----AVDCYNYVINV------IED 72 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHT------SCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHh------Ccc
Confidence 34556666677777777777777777766 223 35667777777777777777 77777777664 112
Q ss_pred --chhhHHHHHHHHHhc-CChhHHhhHHHhhCCCC
Q 043380 172 --KPHLYVSMMHELAAR-VDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 172 --~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~ 203 (246)
+...+..+..++... |++++|.+.++......
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 456677777777777 77777777777766443
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.43 E-value=2.6e-06 Score=66.02 Aligned_cols=99 Identities=8% Similarity=-0.071 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
.+...+..+...+...|++++|...|.+.... .+.+...|..+..+|.+.|++++|...++...+ +.|+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~ 70 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQ 70 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCC
Confidence 35677888889999999999999999999986 233678899999999999999999999999988 4565
Q ss_pred -HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 129 -RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 129 -~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...+..+..+|...|++++ |...|+...+.
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~l 101 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDE----AIANLQRAYSL 101 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh
Confidence 7888999999999999999 99999998776
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=7.2e-06 Score=56.49 Aligned_cols=98 Identities=12% Similarity=-0.130 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-
Q 043380 50 DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD- 128 (246)
Q Consensus 50 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~- 128 (246)
+...+..+...+.+.|++++|...|++.... -+.+...|..+-.+|.+.|++++|...|+.... +.|+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~ 85 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL---MDINE 85 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCC
Confidence 4455667778889999999999999999986 234677899999999999999999999999988 4455
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...+..+..+|...|++++ |...|+...+.
T Consensus 86 ~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~ 115 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDG----AESGFYSARAL 115 (142)
T ss_dssp THHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh
Confidence 6778889999999999999 99999998876
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=0.00025 Score=56.44 Aligned_cols=209 Identities=11% Similarity=-0.031 Sum_probs=147.8
Q ss_pred CcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-CcchHHHHHHHHHhccCCCCCCCCC
Q 043380 14 KLNTIVMNAVIEASREAQ-RIDEAYQILESVEKGLEPDSLSYNILISACIKT-K-KLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
+-+..+||.--.++...| .+++++++++.+....+.+...|+.--..+.+. + ++++++++++++.+. -+
T Consensus 85 P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dp 156 (349)
T 3q7a_A 85 PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DP 156 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CT
T ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CC
Confidence 345667888777777788 599999999998765677888999887777776 6 889999999999985 34
Q ss_pred ccHHHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-------hhhhhhHHHHH
Q 043380 91 PDIFTYATLLMGFRHAKDLQ--------SLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS-------IKVVGLYALCI 155 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-------~~~~~~~a~~~ 155 (246)
-|...|+----.+.+.|.++ ++++.++.+.+ .. .-|...|+.....+.+.+. +++ +++.
T Consensus 157 kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~-~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e----ELe~ 230 (349)
T 3q7a_A 157 KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR-VD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD----ELIY 230 (349)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH----HHHH
T ss_pred CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHhccccccchHHHHH----HHHH
Confidence 46777777666665555555 89999999988 32 2347788888887777776 577 8999
Q ss_pred HHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCCh--------------------hHHhhHHHhhCCCCCCCCCchhhhHH
Q 043380 156 FGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDY--------------------DIVKSPYRRMWPDSTGTISPEVQEEA 215 (246)
Q Consensus 156 ~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~~~~~~~~~~~~~ 215 (246)
+++.... -.-|...|+-+-..+.+.|+. ........++.....+........++
T Consensus 231 ~~~aI~~------~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 231 ILKSIHL------IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHH------CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHh------CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 9988886 334667787777777776654 34444444544322110001112237
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 216 GHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 216 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
...|.+.|...|+.++|.++++.+.++
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 888999999999999999999998754
No 168
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.38 E-value=3.7e-05 Score=66.85 Aligned_cols=202 Identities=4% Similarity=-0.047 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHH-HHHHHHHhccCCCCCCCC
Q 043380 18 IVMNAVIEASREAQ-------RIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTM-PFNEQLKDNGQKCSSGGF 89 (246)
Q Consensus 18 ~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~ 89 (246)
..|...+..--..+ ..+++..+|++...-++-+...|-....-+...|+.++|. ++|++.... +
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~ 374 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------I 374 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------C
Confidence 45666665433332 1345667888876556778888988888888999999997 999999875 4
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---------CCCC------------HHHHHHHHHHHHhcCChhhh
Q 043380 90 HPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN---------LILD------------RSTFTAMVDALLYSGSIKVV 148 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------~~p~------------~~~~~~li~~~~~~~~~~~~ 148 (246)
+.+...|-..+...-+.|+++.|.++|+.+.. .. -.|+ ..+|...+....+.|+.+.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~-~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~- 452 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCID-RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAA- 452 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHH-
Confidence 55666788888888999999999999999886 21 0142 3367888888888899999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc-CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcC
Q 043380 149 GLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR-VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDG 227 (246)
Q Consensus 149 ~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 227 (246)
|..+|....+. .-.+....|......-.+. ++.+.|.++|+...+.. +.... .|...++.....|
T Consensus 453 ---AR~vf~~A~~~-----~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~----p~~~~--~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 453 ---SRKIFGKCRRL-----KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF----ATDGE--YINKYLDFLIYVN 518 (679)
T ss_dssp ---HHHHHHHHHHT-----GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH----TTCHH--HHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHh-----cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----CCchH--HHHHHHHHHHhCC
Confidence 99999998774 0111233444333333344 45999999999887542 22221 4677888888899
Q ss_pred ChhHHHHHHHHHHhhc
Q 043380 228 QVDLALDKLSNTITRW 243 (246)
Q Consensus 228 ~~~~a~~~~~~m~~~g 243 (246)
+.+.|..+|++.....
T Consensus 519 ~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 519 EESQVKSLFESSIDKI 534 (679)
T ss_dssp CHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=1.8e-05 Score=53.12 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc----H
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPDS---LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD----I 93 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~ 93 (246)
-.+...+.+.|++++|...|+...+..+.+. ..+..+..++...|++++|...|++.... .|+ .
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~ 76 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---------YPTHDKAA 76 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTSTTHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------CCCCcccH
Confidence 3456678889999999999998764333334 47788888999999999999999999886 233 5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 129 (246)
..+..+..++...|++++|...|+.... ..|+.
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~ 109 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVAT---QYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCC
Confidence 6788888999999999999999999988 34653
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=6e-06 Score=55.40 Aligned_cols=93 Identities=13% Similarity=0.011 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHH
Q 043380 20 MNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYAT 98 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ 98 (246)
+..+...+.+.|++++|...|+...+.-+.+...|..+-.++...|++++|...|++..+. .| +...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~P~~~~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------DPKDIAVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHH
Confidence 3445566777777777777777765433556677777777777777777777777777765 33 4556777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
+..+|...|++++|...|++..+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777766
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.30 E-value=6e-06 Score=54.87 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=70.6
Q ss_pred hcCCcchHHHHHHHHHhccCCCCCCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHH
Q 043380 63 KTKKLDVTMPFNEQLKDNGQKCSSGG--FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDAL 139 (246)
Q Consensus 63 ~~~~~~~a~~~~~~m~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 139 (246)
..|++++|...|++..+. + -+-+...|..+..+|...|++++|...|++..+ ..|+ ...+..+..++
T Consensus 2 ~~g~~~~A~~~~~~al~~-------~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK---QFPNHQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHH
Confidence 468899999999999975 2 133456899999999999999999999999988 4465 78888999999
Q ss_pred HhcCChhhhhhHHHHHHHHHHHh
Q 043380 140 LYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...|++++ |...|+.....
T Consensus 72 ~~~g~~~~----A~~~~~~al~~ 90 (117)
T 3k9i_A 72 YNLGRYEQ----GVELLLKIIAE 90 (117)
T ss_dssp HHHTCHHH----HHHHHHHHHHH
T ss_pred HHcCCHHH----HHHHHHHHHHh
Confidence 99999999 99999998876
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.30 E-value=1e-05 Score=67.17 Aligned_cols=147 Identities=5% Similarity=-0.097 Sum_probs=113.5
Q ss_pred CcchHHHHHHHHHhccCCCCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC----------------
Q 043380 66 KLDVTMPFNEQLKDNGQKCSSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD---------------- 128 (246)
Q Consensus 66 ~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---------------- 128 (246)
++++|.+.|+...+. .| ....|..+-..|.+.|++++|...|++..+ +.|+
T Consensus 249 ~~~~A~~~~~~~~~~---------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~ 316 (457)
T 1kt0_A 249 SFEKAKESWEMDTKE---------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS---WLEMEYGLSEKESKASESFL 316 (457)
T ss_dssp EEECCCCGGGSCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTTCCSCCHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHH---------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HhcccccCChHHHHHHHHHH
Confidence 445565555444332 23 345788889999999999999999999887 3344
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCC
Q 043380 129 RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 208 (246)
...|..+..+|.+.|++++ |+..++...+. -..+...|..+-.+|...|++++|...|++.....+....
T Consensus 317 ~~~~~nla~~~~~~g~~~~----A~~~~~~al~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTK----AVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HHHHHHHHHHHHHhcCHHH----HHHHHHHHHhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 4789999999999999999 99999999886 2345788999999999999999999999998765433221
Q ss_pred chhhhHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 043380 209 PEVQEEAGHLLMEAALNDGQVDLALD-KLSNTI 240 (246)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 240 (246)
++..+..++.+.|+.++|.+ .++.|.
T Consensus 387 ------a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 387 ------ARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999887764 455553
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.29 E-value=1.8e-05 Score=65.80 Aligned_cols=131 Identities=6% Similarity=-0.075 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD---------------SLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
....|..+-..|.+.|++++|...|++..+-.+.+ ...|..+-.+|.+.+++++|...|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34578888899999999999999998875322333 588999999999999999999999999986
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHH-HHHHH
Q 043380 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYAL-CIFGE 158 (246)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~-~~~~~ 158 (246)
-+.+...|..+-.+|...|++++|...|++..+ +.|+ ...+..+...+...++.++ +. ..+..
T Consensus 347 --------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~----a~~~~~~~ 411 (457)
T 1kt0_A 347 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNE----RDRRIYAN 411 (457)
T ss_dssp --------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred --------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 234678899999999999999999999999998 5565 6678888888888888887 55 34444
Q ss_pred HHH
Q 043380 159 IVK 161 (246)
Q Consensus 159 m~~ 161 (246)
|..
T Consensus 412 ~f~ 414 (457)
T 1kt0_A 412 MFK 414 (457)
T ss_dssp C--
T ss_pred HHh
Confidence 443
No 174
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=2.8e-05 Score=59.96 Aligned_cols=130 Identities=7% Similarity=-0.093 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc--HHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD--IFTY 96 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~ 96 (246)
.+-.+...+...|++++|.++|+.+..+ .|+......+-..+.+.+++++|+..|+..... ..|. ...+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--------~d~~~~~~a~ 174 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--------PDKFLAGAAG 174 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--------SCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--------CCcccHHHHH
Confidence 3445677888999999999999988643 354436566666889999999999999866543 1221 3478
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD--RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..+-.++...|++++|+..|++... ....|. .........++.+.|+.++ |..+|+++...
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~de----A~~~l~~a~a~ 237 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESA----AVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhc
Confidence 8889999999999999999999986 444354 3466778889999999999 99999999987
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=3.5e-06 Score=70.43 Aligned_cols=120 Identities=8% Similarity=-0.038 Sum_probs=94.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHH
Q 043380 23 VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMG 102 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~ 102 (246)
+...+.+.|++++|.+.|++..+-.+.+...|..+..+|.+.|++++|.+.+++..+. -+-+...|..+-.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 3445677899999999999876434567899999999999999999999999999986 23457789999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHH--HHhcCChhhhhhHHHHHHH
Q 043380 103 FRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDA--LLYSGSIKVVGLYALCIFG 157 (246)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~~~~~~~~~~a~~~~~ 157 (246)
|...|++++|.+.|++..+ +.|+ ...+..+..+ +.+.|++++ |.+.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~g~~~~----A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFER----AIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHH---HSTTCTTHHHHHHHHHHHHHHHHHCC----C-----
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH----Hhcccc
Confidence 9999999999999999988 3344 3445555544 888899999 999988
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.24 E-value=3.1e-05 Score=62.52 Aligned_cols=129 Identities=5% Similarity=-0.030 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCC-------CCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKC-------SSGGFHP-DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN 124 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 124 (246)
.+..+-..+.+.|++++|.+.|++.++.--.. ......| +...|..+..+|.+.|++++|...+++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---
Confidence 35555666667777777777777666510000 0000123 456888899999999999999999999988
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhh
Q 043380 125 LILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKS 194 (246)
Q Consensus 125 ~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 194 (246)
+.|+ ...|..+..+|...|++++ |...|+...+. -.-+...+..+..++...++.+++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~e----A~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQ----ALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHH----HHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4465 7788889999999999999 99999998886 12245677777777777777766653
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=4.2e-05 Score=51.22 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-H---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC--
Q 043380 55 NILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-I---FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-- 128 (246)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-- 128 (246)
..+...+...|++++|...|++..+. .|+ . ..+..+..++...|++++|...|+.... ..|+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~---~~p~~~ 73 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS---RYPTHD 73 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTST
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH---HCCCCc
Confidence 34566778899999999999999886 232 2 5788888999999999999999999988 3344
Q ss_pred --HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 129 --RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 129 --~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...+..+..++...|++++ |...|+.....
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTE----AQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHH
Confidence 5678889999999999999 99999999886
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=1e-05 Score=64.43 Aligned_cols=132 Identities=7% Similarity=-0.059 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHH------------------HHHHHHHHHHhcCChhhhhhHHHH
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS------------------TFTAMVDALLYSGSIKVVGLYALC 154 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~------------------~~~~li~~~~~~~~~~~~~~~a~~ 154 (246)
...+..+-..+.+.|++++|...|++... +.|+.. .|..+..+|.+.|++++ |..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~----A~~ 251 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE----AIG 251 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHH----HHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHH
Confidence 34677788888999999999999999887 446643 78899999999999999 999
Q ss_pred HHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHH-HHhcCChhHHH
Q 043380 155 IFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEA-ALNDGQVDLAL 233 (246)
Q Consensus 155 ~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~ 233 (246)
.++...+. -..+...|..+..+|...|++++|...|++.....+.... ++..|... ....+..+++.
T Consensus 252 ~~~~al~~------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~------a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 252 HCNIVLTE------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA------IRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHHHHHHHH
Confidence 99999886 2346688999999999999999999999998765432211 45555554 34467778888
Q ss_pred HHHHHHHhhc
Q 043380 234 DKLSNTITRW 243 (246)
Q Consensus 234 ~~~~~m~~~g 243 (246)
++|+.|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8998887654
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.22 E-value=2e-05 Score=63.61 Aligned_cols=120 Identities=7% Similarity=-0.061 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEK----------------GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
...+..+-..+.+.|++++|++.|++..+ ..+.+...|..+..+|.+.+++++|.+.+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34578888899999999999999987643 22235678889999999999999999999999985
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhh
Q 043380 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~ 147 (246)
-+.+...|..+-.+|...|++++|...|++..+ +.|+ ...+..+...+...++.++
T Consensus 303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---IAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 233577899999999999999999999999988 4565 6667777777777777666
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=2.8e-05 Score=54.68 Aligned_cols=103 Identities=7% Similarity=-0.118 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKG------------------LEPDSLSYNILISACIKTKKLDVTMPFNEQLK 78 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 78 (246)
+..+...-..+.+.|++++|...|.....- .+.+...|..+..+|.+.|++++|...+.+.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999876431 12234678889999999999999999999999
Q ss_pred hccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHH
Q 043380 79 DNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS 130 (246)
Q Consensus 79 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 130 (246)
.. -+.+...|..+-.+|...|++++|...|+.... +.|+..
T Consensus 91 ~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~---l~p~~~ 131 (162)
T 3rkv_A 91 KR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR---NHPAAA 131 (162)
T ss_dssp HH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCGGGH
T ss_pred hc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh---cCCCCH
Confidence 86 234577899999999999999999999999988 557643
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=1.9e-05 Score=52.88 Aligned_cols=96 Identities=3% Similarity=-0.128 Sum_probs=75.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
.+..+...+.+.|++++|...|++..+ ..|+ ...|..+..++...|++++ |+..|++..+. -+-+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~----A~~~~~~al~l------~P~~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGL----AIIALNHARML------DPKDI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CTTCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------CCCCH
Confidence 455666778888999999999998887 4564 7778888888999999999 99999988876 12245
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
..+..+..++...|++++|...+++....+
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 678888888899999999999998876543
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.20 E-value=1.7e-05 Score=66.30 Aligned_cols=138 Identities=7% Similarity=-0.071 Sum_probs=101.6
Q ss_pred HHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCC-HHHHH
Q 043380 60 ACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC----CN-LILD-RSTFT 133 (246)
Q Consensus 60 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~p~-~~~~~ 133 (246)
.+...|++++|+.++++..+...+......+-...+++.|...|...|++++|..++++.... .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999988765332222222334569999999999999999999998886551 11 2344 56799
Q ss_pred HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC-CCcch-hhHHHHHHHHHhcCChhHHhhHHHhhCC
Q 043380 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG-LWPKP-HLYVSMMHELAARVDYDIVKSPYRRMWP 201 (246)
Q Consensus 134 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 201 (246)
.|...|...|++++ |+.++++.........| -.|+. .+...+-.++...+.+++|+.++..+.+
T Consensus 398 nLa~~~~~~G~~~e----A~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEV----GHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHH----HHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHH----HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999987654221111 12333 5566777888889999999999998863
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=7.9e-05 Score=52.26 Aligned_cols=116 Identities=13% Similarity=0.004 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-------------HHHHHHHHHHHHccCCHHHHHHHHHH
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-------------IFTYATLLMGFRHAKDLQSLLEIVFE 118 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~ 118 (246)
..+...-..+.+.|++++|...|++.++. .|+ ...|+.+-.++.+.|++++|+..+++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---------~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI---------SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---------CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34556667788899999999999999876 333 33899999999999999999999999
Q ss_pred HHhC----CCCCCC-HHHH----HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHH
Q 043380 119 MKSC----CNLILD-RSTF----TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180 (246)
Q Consensus 119 m~~~----~~~~p~-~~~~----~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li 180 (246)
..+. ..+.|+ ...| .....++...|++++ |+..|+...+....+.++.+........+
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eE----Al~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE----AMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHH----HHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 8881 012787 6678 899999999999999 99999999887444446666555444444
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=7.5e-05 Score=52.43 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCC---CCC-------CCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043380 51 SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS---SGG-------FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMK 120 (246)
Q Consensus 51 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~-------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 120 (246)
...+...-..+.+.|++++|...|.+.+..--... ... -+.+...|..+..+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45677788889999999999999999887400000 000 12234689999999999999999999999998
Q ss_pred hCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 121 SCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 121 ~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+ +.|+ ...|..+..+|...|++++ |...|+.....
T Consensus 91 ~---~~p~~~~a~~~~g~~~~~~g~~~~----A~~~~~~al~l 126 (162)
T 3rkv_A 91 K---REETNEKALFRRAKARIAAWKLDE----AEEDLKLLLRN 126 (162)
T ss_dssp H---HSTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred h---cCCcchHHHHHHHHHHHHHhcHHH----HHHHHHHHHhc
Confidence 8 4566 7889999999999999999 99999999886
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=4.8e-06 Score=55.34 Aligned_cols=85 Identities=9% Similarity=-0.078 Sum_probs=66.2
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHc
Q 043380 29 EAQRIDEAYQILESVEKG---LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH 105 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~---~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 105 (246)
..|++++|+..|++...- -+.+...+..+..+|...|++++|...|++..+. .+-+...+..+..++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAMVLYN 73 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHH
Confidence 457888999999887642 2335677888889999999999999999999886 23356788889999999
Q ss_pred cCCHHHHHHHHHHHHh
Q 043380 106 AKDLQSLLEIVFEMKS 121 (246)
Q Consensus 106 ~~~~~~a~~~~~~m~~ 121 (246)
.|++++|...|++...
T Consensus 74 ~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIA 89 (117)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998877
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=2e-05 Score=65.96 Aligned_cols=131 Identities=5% Similarity=-0.057 Sum_probs=97.7
Q ss_pred HHhcCCHHHHHHHHHHHH----hCCCC----CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHH
Q 043380 27 SREAQRIDEAYQILESVE----KGLEP----DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYA 97 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~----~~~~~----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~ 97 (246)
+-..|++++|+.++++.. +-..| ...+++.|..+|...|++++|+.++++..+...+... .-.|+ ..+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 456899999999998753 22222 3467899999999999999999999988754211111 22344 56899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSC----CNL-ILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.|-..|...|++++|+.++++.... .|- .|+ ..+.+.+-.++...+.++. |+.+|..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~----ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ----NEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 9999999999999999998876541 121 233 3456777788888999999 99999999876
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=1.2e-05 Score=64.16 Aligned_cols=129 Identities=13% Similarity=0.014 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH------------------HHHHHHHHHHccCCHHHHH
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF------------------TYATLLMGFRHAKDLQSLL 113 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~------------------~~~~ll~~~~~~~~~~~a~ 113 (246)
..+..+-..+.+.|++++|...|.+.... .|+.. .|..+-.+|.+.|++++|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44666777778899999999999998875 45443 7889999999999999999
Q ss_pred HHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc-hhhHHHHHHH-HHhcCChh
Q 043380 114 EIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK-PHLYVSMMHE-LAARVDYD 190 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~ 190 (246)
..++...+ +.|+ ...|..+..+|...|++++ |...|+...+. .|+ ...+..+... ....+..+
T Consensus 251 ~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~----A~~~l~~al~l-------~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 251 GHCNIVLT---EEEKNPKALFRRGKAKAELGQMDS----ARDDFRKAQKY-------APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHH----HHHHHHHTTC-------------------------------
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999988 4464 7889999999999999999 99999988654 343 3444444444 23455677
Q ss_pred HHhhHHHhhCCCC
Q 043380 191 IVKSPYRRMWPDS 203 (246)
Q Consensus 191 ~a~~~~~~~~~~~ 203 (246)
++..+|..+....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8888888876543
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=2.3e-05 Score=50.94 Aligned_cols=96 Identities=7% Similarity=-0.066 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
++...|..+-..+...|++++|...|++..+ ..|+ ...+..+..+|...|++++ |...++...+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~------- 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLIT---AQPQNPVGYSNKAMALIKLGEYTQ----AIQMCQQGLRY------- 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHTS-------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHh-------
Confidence 4566788888899999999999999999888 3454 7788899999999999999 99999998764
Q ss_pred Ccc-------hhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 170 WPK-------PHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 170 ~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
.|+ ...+..+..++...|+.+.|...++++.
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 344 4556667777777777777777666553
No 189
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.95 E-value=0.0019 Score=54.11 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=128.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCC--CCC---
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS--SGG--- 88 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~--- 88 (246)
+.++..|-..+..+.+.|+++.|.++|++.... +.+...|. .|+.....++. ++.+.+.-.... ..+
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------C
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhc
Confidence 455778888888889999999999999987744 44433332 23332222222 333333200000 000
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFT--AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
.......|...+....+.++.+.|..+|+.... .+ .+...|. +.+.... .++.+. |..+|+...+.
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~-~~--~~~~v~i~~A~lE~~~-~~d~~~----ar~ife~al~~---- 349 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIELGN-EG--VGPHVFIYCAFIEYYA-TGSRAT----PYNIFSSGLLK---- 349 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-SC--CCHHHHHHHHHHHHHH-HCCSHH----HHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhC-CC--CChHHHHHHHHHHHHH-CCChHH----HHHHHHHHHHH----
Confidence 011234677777777788899999999999933 32 2444444 3333322 336899 99999999886
Q ss_pred CCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 167 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
..-+...+...++.....|+.+.|..+|+.+.+ . ...|...+..-...|+.+.+.+++++...
T Consensus 350 --~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k------~----~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 --HPDSTLLKEEFFLFLLRIGDEENARALFKRLEK------T----SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC------B----HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------H----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222234456677777889999999999999842 1 11688888887888999999999988764
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.2e-05 Score=51.08 Aligned_cols=88 Identities=9% Similarity=-0.019 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
++...|..+...+...|++++|.+.|++..+. .+.+...|..+-.++...|++++|...+++..+ +.|+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~ 70 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTST 70 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCC
Confidence 35567888888999999999999999999886 234677899999999999999999999999988 4555
Q ss_pred -------HHHHHHHHHHHHhcCChhh
Q 043380 129 -------RSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 129 -------~~~~~~li~~~~~~~~~~~ 147 (246)
...+..+..++...|+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4456666667777777666
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.94 E-value=0.0024 Score=50.49 Aligned_cols=204 Identities=9% Similarity=-0.087 Sum_probs=139.0
Q ss_pred cCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHhccC
Q 043380 15 LNTIVMNAVIEASREAQR----------IDEAYQILESVEKGLEPDSLSYNILISACIKTKK--LDVTMPFNEQLKDNGQ 82 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~~~ 82 (246)
-+..+||.--......+. +++++.+++.+....+.+..+|+.-.-.+.+.++ +++++++++++.+.
T Consensus 62 ~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-- 139 (331)
T 3dss_A 62 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-- 139 (331)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--
Confidence 345556655444444333 6788888888765457788999988888888774 78999999999986
Q ss_pred CCCCCCCCccHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------------CChhh
Q 043380 83 KCSSGGFHPDIFTYATLLMGFRHAKD-LQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYS--------------GSIKV 147 (246)
Q Consensus 83 ~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------------~~~~~ 147 (246)
-+-|...|+.---.+...|. ++++++.++.+.+ .. +-|...|+.....+... +.+++
T Consensus 140 ------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~-~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~e 211 (331)
T 3dss_A 140 ------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 211 (331)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHH
Confidence 24577788888878888888 6999999999988 32 23466777666555554 34677
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc-----------CChhHHhhHHHhhCCCCCCCCCchhhhHHH
Q 043380 148 VGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR-----------VDYDIVKSPYRRMWPDSTGTISPEVQEEAG 216 (246)
Q Consensus 148 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 216 (246)
+++.++..... -+-|...|+-+-..+.+. +.++++.+.++++....+.....-. +.
T Consensus 212 ----Ele~~~~ai~~------~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~---~~ 278 (331)
T 3dss_A 212 ----ELELVQNAFFT------DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL---TI 278 (331)
T ss_dssp ----HHHHHHHHHHH------STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH---HH
T ss_pred ----HHHHHHHHHHh------CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH---HH
Confidence 99999998886 234567776555555554 4567888888888765443221111 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 217 HLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 217 ~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
..++.+.-..|..+++..++.++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHH
Confidence 2222233346778888889888865
No 192
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.91 E-value=0.0034 Score=49.12 Aligned_cols=184 Identities=8% Similarity=-0.064 Sum_probs=135.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH----
Q 043380 30 AQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK--KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF---- 103 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~---- 103 (246)
....++|+++++.+..--+-+...|+.--..+...+ ++++++++++.+... .+-+..+|+.--..+
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHHHHH
Confidence 344578999999876433456677898888888888 999999999999986 233445566544444
Q ss_pred Hcc---CCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChh--hhhhHHHHHHHHHHHhhcCCCCCCcchhhHH
Q 043380 104 RHA---KDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIK--VVGLYALCIFGEIVKRVCSNPGLWPKPHLYV 177 (246)
Q Consensus 104 ~~~---~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 177 (246)
... +++++++.+++.+.+ ..| +-.+|+.-.-.+...|.++ + +++.++.+.+. -.-|...|+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~---~~pkny~aW~~R~~vl~~l~~~~~~~----EL~~~~~~i~~------d~~N~sAW~ 184 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLS---SDPKNHHVWSYRKWLVDTFDLHNDAK----ELSFVDKVIDT------DLKNNSAWS 184 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHH------CTTCHHHHH
T ss_pred HhccccCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcccChHH----HHHHHHHHHHh------CCCCHHHHH
Confidence 444 789999999999998 334 4778887777888888888 8 99999999987 234668888
Q ss_pred HHHHHHHhcCC------hhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhH-HHHHHHHHH
Q 043380 178 SMMHELAARVD------YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDL-ALDKLSNTI 240 (246)
Q Consensus 178 ~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~ 240 (246)
.-...+...++ ++++.+.++.....++.. .++|+.+-..+.+.|+... +..+...+.
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------PSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC------ccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 87777777777 888999988877554322 2278888888888887544 444555443
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.81 E-value=0.00026 Score=46.42 Aligned_cols=80 Identities=9% Similarity=-0.036 Sum_probs=66.6
Q ss_pred chHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChh
Q 043380 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIK 146 (246)
Q Consensus 68 ~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~ 146 (246)
++|.+.|++..+. -+.+...+..+...|...|++++|...|++... ..|+ ...|..+...|...|+++
T Consensus 2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD---FDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHcCCHH
Confidence 4677888888875 234677888999999999999999999999888 3455 778888999999999999
Q ss_pred hhhhHHHHHHHHHHHh
Q 043380 147 VVGLYALCIFGEIVKR 162 (246)
Q Consensus 147 ~~~~~a~~~~~~m~~~ 162 (246)
+ |...|+...+.
T Consensus 71 ~----A~~~~~~al~~ 82 (115)
T 2kat_A 71 G----ARQAWESGLAA 82 (115)
T ss_dssp H----HHHHHHHHHHH
T ss_pred H----HHHHHHHHHHh
Confidence 9 99999988765
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.78 E-value=0.00013 Score=48.00 Aligned_cols=79 Identities=11% Similarity=-0.046 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHH
Q 043380 35 EAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE 114 (246)
Q Consensus 35 ~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 114 (246)
.|++.|+...+..+.+...+..+...|...|++++|...|++..+. -+.+...|..+..+|...|++++|..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566676665434556777888888888888888888888888875 13346677888888888888888888
Q ss_pred HHHHHHh
Q 043380 115 IVFEMKS 121 (246)
Q Consensus 115 ~~~~m~~ 121 (246)
.|+....
T Consensus 75 ~~~~al~ 81 (115)
T 2kat_A 75 AWESGLA 81 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887766
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.77 E-value=0.00034 Score=43.40 Aligned_cols=82 Identities=11% Similarity=-0.020 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
+...+..+...+.+.|++++|...|++.....+.+...+..+..++...|++++|...|++..+. .+.+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~ 79 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCHHH
Confidence 45678888899999999999999999876434567788999999999999999999999999886 1234556
Q ss_pred HHHHHHHHHc
Q 043380 96 YATLLMGFRH 105 (246)
Q Consensus 96 ~~~ll~~~~~ 105 (246)
+..+-.++.+
T Consensus 80 ~~~l~~~~~~ 89 (91)
T 1na3_A 80 KQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666544
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.75 E-value=0.0008 Score=47.12 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------CH-----HHHHHHHHHHHhcCCcchHHHHHHHHHhc----
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEP--------DS-----LSYNILISACIKTKKLDVTMPFNEQLKDN---- 80 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--------~~-----~t~~~li~~~~~~~~~~~a~~~~~~m~~~---- 80 (246)
..+...-..+.+.|++++|++.|+.... +.| +. ..|+.+-.++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4456677788899999999999987642 122 23 38999999999999999999999999873
Q ss_pred cCCCCCCCCCcc-HHHH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 81 GQKCSSGGFHPD-IFTY----ATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 81 ~~~~~~~~~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
+ .+.|+ ...| ...-.++...|++++|+..|+...+
T Consensus 91 ~------e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 G------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp C------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c------cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 12565 4578 8999999999999999999998866
No 197
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.68 E-value=0.0097 Score=47.00 Aligned_cols=202 Identities=6% Similarity=-0.090 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHH---hcCCH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHHHhcc
Q 043380 16 NTIVMNAVIEASR---EAQRI-DEAYQILESVEKGLEPDSLSYNILISACIKTKK----------LDVTMPFNEQLKDNG 81 (246)
Q Consensus 16 ~~~~~~~li~~~~---~~g~~-~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~----------~~~a~~~~~~m~~~~ 81 (246)
-+..|..++..+. +.|.. ++|+++++.+..--+-+...|+.--..+...+. +++++.+++.+...
T Consensus 25 ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~- 103 (331)
T 3dss_A 25 KLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV- 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-
Confidence 3456666655443 45665 479999998875334456667754444433332 67899999999885
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCC-hhhhhhHHHHHHH
Q 043380 82 QKCSSGGFHPDIFTYATLLMGFRHAK--DLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGS-IKVVGLYALCIFG 157 (246)
Q Consensus 82 ~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~-~~~~~~~a~~~~~ 157 (246)
-+-+..+|+.--..+.+.+ ++++++.+++.+.+ ..| |-.+|+.-.-.+...|. +++ +++.++
T Consensus 104 -------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~---~dprNy~AW~~R~~vl~~l~~~~~e----el~~~~ 169 (331)
T 3dss_A 104 -------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAE----ELAFTD 169 (331)
T ss_dssp -------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHH----HHHHHH
T ss_pred -------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCcCHHH----HHHHHH
Confidence 2446778888777777777 48999999999998 334 47778777777777888 588 999999
Q ss_pred HHHHhhcCCCCCCcchhhHHHHHHHHHhc--------------CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHH
Q 043380 158 EIVKRVCSNPGLWPKPHLYVSMMHELAAR--------------VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAA 223 (246)
Q Consensus 158 ~m~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 223 (246)
.+.+. -.-|..+|+.....+... +.++++.+.+.......+.. .++|+.+-..+
T Consensus 170 ~~I~~------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d------~SaW~Y~r~ll 237 (331)
T 3dss_A 170 SLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLL 237 (331)
T ss_dssp HHHHH------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHH
T ss_pred HHHHH------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Confidence 99987 234667787777766665 45778888888876543322 22676665555
Q ss_pred Hhc-----------CChhHHHHHHHHHHhhcc
Q 043380 224 LND-----------GQVDLALDKLSNTITRWK 244 (246)
Q Consensus 224 ~~~-----------g~~~~a~~~~~~m~~~g~ 244 (246)
.+. +.++++++.++++.+..+
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 554 457899999988876544
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.62 E-value=0.00031 Score=44.99 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=57.9
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
+-++..+..+..+|.+.|++++|+..|+...+-.+.+...|..+-.+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3467788999999999999999999999876434557788999999999999999999999998864
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.0013 Score=40.60 Aligned_cols=82 Identities=9% Similarity=0.032 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCC
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLW 170 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 170 (246)
+...+..+-..+...|++++|...|++..+ ..| +...+..+...+...|++++ |...|++..+. -+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~~------~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAWYNLGNAYYKQGDYDE----AIEYYQKALEL------DP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------CT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHhhHHH----HHHHHHHHHhc------CC
Confidence 456788888999999999999999999988 334 47788899999999999999 99999999886 12
Q ss_pred cchhhHHHHHHHHHhc
Q 043380 171 PKPHLYVSMMHELAAR 186 (246)
Q Consensus 171 p~~~~~~~li~~~~~~ 186 (246)
.+...+..+-.++...
T Consensus 75 ~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 75 NNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 3455666666655543
No 200
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.62 E-value=0.013 Score=46.64 Aligned_cols=177 Identities=8% Similarity=-0.084 Sum_probs=129.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHH
Q 043380 26 ASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTK-KLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104 (246)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~ 104 (246)
...+.+..++|+++++.+..-.+-+...|+.--..+...+ .+++++++++.+... .+-+..+|+.--..+.
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHH
Confidence 3344455678999999886433567777888888888888 599999999999986 3446678888777776
Q ss_pred cc-C-CHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChh--------hhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 105 HA-K-DLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSGSIK--------VVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 105 ~~-~-~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
+. + ++++++++++.+.+ ..| +-.+|+.-.-.+...+.++ + +++.++.+.+. -.-|.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~---~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e----ELe~~~k~I~~------dp~N~ 201 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLL---PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS----ELDWCNEMLRV------DGRNN 201 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTS---SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH----HHHHHHHHHHH------CTTCH
T ss_pred HhcCCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhccccccchhhHHH----HHHHHHHHHHh------CCCCH
Confidence 66 6 88999999999988 334 4667776665666666666 7 99999999987 23467
Q ss_pred hhHHHHHHHHHhcCC-------hhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCCh
Q 043380 174 HLYVSMMHELAARVD-------YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQV 229 (246)
Q Consensus 174 ~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (246)
..|+.--..+.+.++ ++++.+.+++....++.. .++|+.+-..+.+.|+.
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n------~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN------VSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCC
Confidence 889888888888876 678888887766543322 22677776666666654
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.55 E-value=0.0012 Score=54.24 Aligned_cols=102 Identities=7% Similarity=-0.132 Sum_probs=78.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCCC-HH
Q 043380 57 LISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC----C-NLILD-RS 130 (246)
Q Consensus 57 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~p~-~~ 130 (246)
.+..+.+.|++++|++++++..+...+...........+++.|..+|...|++++|+.++++.... . .-.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566789999999999999875333323333334569999999999999999999999977651 1 23344 56
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+++.|...|...|++++ |+.++++..+.
T Consensus 373 ~l~nLa~~~~~~g~~~e----A~~~~~~Al~i 400 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQ----AMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTTCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHHH
Confidence 79999999999999999 99999987664
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.54 E-value=0.00022 Score=58.67 Aligned_cols=91 Identities=8% Similarity=0.038 Sum_probs=68.9
Q ss_pred cCCHHHHHHHHHHHH----hCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHH
Q 043380 30 AQRIDEAYQILESVE----KGLEPD----SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLL 100 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~----~~~~~~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll 100 (246)
.|++++|+.++++.. +-..|+ ..+++.|..+|...|++++|+.++++..+...+... .-.|+ ..+|+.|-
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-VYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHH
Confidence 578999999998753 222232 467899999999999999999999998753111111 22444 45899999
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 043380 101 MGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~ 121 (246)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987665
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.53 E-value=0.00043 Score=56.97 Aligned_cols=96 Identities=6% Similarity=-0.091 Sum_probs=73.6
Q ss_pred hcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCC-HHHHHHHH
Q 043380 63 KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC----CN-LILD-RSTFTAMV 136 (246)
Q Consensus 63 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~p~-~~~~~~li 136 (246)
..|++++|+.++++..+...+......+-...+++.|..+|...|++++|+.++++.... .| -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999988764322222222233568999999999999999999999987651 12 2355 56799999
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..|...|++++ |+.++++..+.
T Consensus 390 ~~~~~qg~~~e----A~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAA----GEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHH----HHHHHHHHHHH
T ss_pred HHHHhccCHHH----HHHHHHHHHHH
Confidence 99999999999 99999987664
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.53 E-value=0.00038 Score=44.57 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 48 EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
+-+...+..+...|...|++++|...|++..+. -+.+...|..+-.+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346778888999999999999999999999886 123466889999999999999999999998776
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.50 E-value=0.00055 Score=56.30 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=74.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CCCC----CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc-
Q 043380 22 AVIEASREAQRIDEAYQILESVEK----GLEP----DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD- 92 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~~----~~~~----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 92 (246)
..+..+.+.|++++|++++++... -..| -..+++.+..+|...|++++|+.++++..+...+... .-.|+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~ 370 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVR 370 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHH
Confidence 345566778999999999988642 1223 2467899999999999999999999988753111111 23344
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
..+++.|-..|...|++++|+.++++..+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 46899999999999999999999887655
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=0.00044 Score=48.36 Aligned_cols=99 Identities=7% Similarity=-0.038 Sum_probs=79.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCc----------chHHHHHHHHHhccCCCCCCCCCc-cHHHH
Q 043380 28 REAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKL----------DVTMPFNEQLKDNGQKCSSGGFHP-DIFTY 96 (246)
Q Consensus 28 ~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~ 96 (246)
.+.+.+++|.+.++....--+.+...|+.+-.++...+++ ++|+..|++.++. .| +...|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------dP~~~~A~ 83 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------DPKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------CTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------CcCcHHHH
Confidence 4567789999999887543466888899888888888765 5999999999986 55 46789
Q ss_pred HHHHHHHHccC-----------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 043380 97 ATLLMGFRHAK-----------DLQSLLEIVFEMKSCCNLILDRSTFTAMVDA 138 (246)
Q Consensus 97 ~~ll~~~~~~~-----------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 138 (246)
..+-.+|...| ++++|.+.|++..+ +.|+...|..-+..
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 99999998764 89999999999999 77887766555543
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.45 E-value=0.006 Score=52.01 Aligned_cols=186 Identities=7% Similarity=-0.091 Sum_probs=133.7
Q ss_pred HHHHHHHHHHH---hcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHHHhccCC
Q 043380 18 IVMNAVIEASR---EAQR-IDEAYQILESVEKGLEPDSLSYNILISACIKTKK----------LDVTMPFNEQLKDNGQK 83 (246)
Q Consensus 18 ~~~~~li~~~~---~~g~-~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~ 83 (246)
..|..++..+. +.|. -++|++.++.+..--+-+...|+.--.++...++ ++++.++++++.+.
T Consensus 26 ~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--- 102 (567)
T 1dce_A 26 KLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--- 102 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---
Confidence 34444444332 3344 5678999988764335566778877666666666 89999999999986
Q ss_pred CCCCCCCccHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcC-ChhhhhhHHHHHHHHH
Q 043380 84 CSSGGFHPDIFTYATLLMGFRHAK--DLQSLLEIVFEMKSCCNLIL-DRSTFTAMVDALLYSG-SIKVVGLYALCIFGEI 159 (246)
Q Consensus 84 ~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~-~~~~~~~~a~~~~~~m 159 (246)
-+-+..+|+.--..+.+.+ +++++++.++.+.+ ..| +-.+|+.-...+...| .+++ +++.++.+
T Consensus 103 -----~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~----el~~~~~~ 170 (567)
T 1dce_A 103 -----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAE----ELAFTDSL 170 (567)
T ss_dssp -----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHH----HHHHHHTT
T ss_pred -----CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHH----HHHHHHHH
Confidence 2446778988888888889 77999999999999 334 4778888888888888 8888 99999998
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHhc--------------CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh
Q 043380 160 VKRVCSNPGLWPKPHLYVSMMHELAAR--------------VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN 225 (246)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 225 (246)
.+. -.-|..+|+.....+.+. +.++++.+.++.....++.. ..+|..+-..+.+
T Consensus 171 I~~------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~------~saW~y~~~ll~~ 238 (567)
T 1dce_A 171 ITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGR 238 (567)
T ss_dssp TTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC------SHHHHHHHHHHSC
T ss_pred HHH------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHhc
Confidence 875 234667888877777663 45688888888766443222 2268777777766
Q ss_pred cCChh
Q 043380 226 DGQVD 230 (246)
Q Consensus 226 ~g~~~ 230 (246)
.+..+
T Consensus 239 ~~~~~ 243 (567)
T 1dce_A 239 AEPHD 243 (567)
T ss_dssp CCCCS
T ss_pred CCCcc
Confidence 66533
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.0071 Score=41.14 Aligned_cols=110 Identities=12% Similarity=-0.040 Sum_probs=88.2
Q ss_pred cCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHc---
Q 043380 30 AQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRH--- 105 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~--- 105 (246)
.++.++|.+.|+..- .+ .|+.. |-..|...+..++|.++|++..+. -+...+..|-..|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHcCCC
Confidence 356889999998875 44 44443 666677777888899999999886 355677788888877
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChhhhhhHHHHHHHHHHHh
Q 043380 106 -AKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLY----SGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 106 -~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+++++|.+.|+...+ .| +...+..|-..|.. .+++++ |...|+...+.
T Consensus 73 ~~~d~~~A~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~----A~~~~~~Aa~~ 126 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACG-LN---DQDGCLILGYKQYAGKGVVKNEKQ----AVKTFEKACRL 126 (138)
T ss_dssp SCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHH----HHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHCCCCCCcCHHH----HHHHHHHHHHC
Confidence 8899999999999988 54 57778888888888 889999 99999998886
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.34 E-value=0.023 Score=48.47 Aligned_cols=151 Identities=9% Similarity=-0.064 Sum_probs=115.4
Q ss_pred CCcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCC-HHHH
Q 043380 65 KKLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRHAKD----------LQSLLEIVFEMKSCCNLILD-RSTF 132 (246)
Q Consensus 65 ~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~p~-~~~~ 132 (246)
...++|.+.++++... .|+ ...|+.--.++...|+ ++++++.++.+.+ ..|. ..+|
T Consensus 43 ~~~eeal~~~~~~l~~---------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW 110 (567)
T 1dce_A 43 ELDESVLELTSQILGA---------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTW 110 (567)
T ss_dssp CCSHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHH---------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHH
Confidence 3456789999999986 454 5567766666666666 8999999999998 4455 7788
Q ss_pred HHHHHHHHhcC--ChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcC-ChhHHhhHHHhhCCCCCCCCCc
Q 043380 133 TAMVDALLYSG--SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV-DYDIVKSPYRRMWPDSTGTISP 209 (246)
Q Consensus 133 ~~li~~~~~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~ 209 (246)
+.---.+.+.+ ++++ +++.++.+.+. -.-|.++|+.--.++...| .++++.+.++++...++...
T Consensus 111 ~hR~w~l~~l~~~~~~~----el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~-- 178 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWAR----ELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-- 178 (567)
T ss_dssp HHHHHHHHTCSSCCHHH----HHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH--
T ss_pred HHHHHHHHHcccccHHH----HHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc--
Confidence 88888888888 6799 99999999997 2346788999888888999 89999999999887654322
Q ss_pred hhhhHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhhc
Q 043380 210 EVQEEAGHLLMEAALND--------------GQVDLALDKLSNTITRW 243 (246)
Q Consensus 210 ~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g 243 (246)
++|+.....+.+. +.++++.+++++.....
T Consensus 179 ----saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 179 ----SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp ----HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ----cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC
Confidence 2677766666552 55788988888776544
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0056 Score=41.66 Aligned_cols=111 Identities=7% Similarity=-0.063 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHh-
Q 043380 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAA- 185 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~- 185 (246)
.++++|.+.|++..+ .| .|+.. |-..|...+.++. |.+.|+...+. | +...+..|-..|..
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~----A~~~~~~Aa~~-----g---~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQK----LFQYLSKACEL-----N---SGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHH----HHHHHHHHHHT-----T---CHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHH----HHHHHHHHHcC-----C---CHHHHHHHHHHHHcC
Confidence 468899999999988 66 34433 6677777788888 99999998876 3 56777788888887
Q ss_pred ---cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh----cCChhHHHHHHHHHHhhc
Q 043380 186 ---RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN----DGQVDLALDKLSNTITRW 243 (246)
Q Consensus 186 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 243 (246)
.+++++|.+.|++....+ . +. ++..|-..|.. .+++++|.++|+.-.+.|
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~g--~--~~----a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGLN--D--QD----GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT--C--HH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHHcCC--C--HH----HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 789999999999986542 1 11 57778888888 899999999999887766
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.23 E-value=0.0013 Score=58.20 Aligned_cols=84 Identities=6% Similarity=-0.056 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc
Q 043380 92 DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP 171 (246)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p 171 (246)
+...|..|-..+.+.++++.|.+.|..+.. |..+...|...|+.+. ..++-+..... |
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~----~~~~~~~a~~~-----~--- 737 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEG----LVTLAKDAETT-----G--- 737 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHH----HHHHHHHHHHT-----T---
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHH----HHHHHHHHHHc-----C---
Confidence 334555555555555555555555555544 3344444444555444 33333333332 1
Q ss_pred chhhHHHHHHHHHhcCChhHHhhHHHhhC
Q 043380 172 KPHLYVSMMHELAARVDYDIVKSPYRRMW 200 (246)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 200 (246)
-++.-..+|...|++++|.+++.++.
T Consensus 738 ---~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 ---KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ---chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 12333344455566666666655553
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.16 E-value=0.0012 Score=46.10 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=78.9
Q ss_pred HhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCH----------HHHHHHHHHHHhCCCCCCC-HH
Q 043380 62 IKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL----------QSLLEIVFEMKSCCNLILD-RS 130 (246)
Q Consensus 62 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~~p~-~~ 130 (246)
.+.+.+++|.+.+++..+. -+-+...|+.+-.++...+++ ++|...|++..+ +.|+ ..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHH
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHH
Confidence 3455688999999999986 234677888888888887764 599999999998 7787 78
Q ss_pred HHHHHHHHHHhcC-----------ChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 043380 131 TFTAMVDALLYSG-----------SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182 (246)
Q Consensus 131 ~~~~li~~~~~~~-----------~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~ 182 (246)
+|..+-.+|...| ++++ |.+.|++..+. .|+...|..-+..
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~e----A~~~~~kAl~l-------~P~~~~y~~al~~ 133 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDL----ATQFFQQAVDE-------QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHH----HHHHHHHHHHH-------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHH----HHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence 8999999998874 8999 99999999885 6777666555543
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.09 E-value=0.063 Score=47.31 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=95.9
Q ss_pred HHHHhcCCHHHHHH-HHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 25 EASREAQRIDEAYQ-ILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 25 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
......+++++|.+ ++..+ |+......++..+.+.|.+++|.++.+. |... ....
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~~--------------~~~~-----f~~~ 662 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISPD--------------QDQK-----FELA 662 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCCC--------------HHHH-----HHHH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCCC--------------cchh-----eehh
Confidence 34456789999877 55222 2122337778888888988888765532 2111 2334
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~ 183 (246)
...|+++.|.++.+.+ .+...|..+...+.+.++++. |.++|..+..- ..+...|
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~----A~~~y~~~~d~--------------~~l~~l~ 717 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKL----AIEAFTNAHDL--------------ESLFLLH 717 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHH----HHHHHHHHTCH--------------HHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHH----HHHHHHHccCh--------------hhhHHHH
Confidence 5679999999985443 357889999999999999999 99999987542 3344444
Q ss_pred HhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 184 AARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 184 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
...|+.+...++.+.....+ -++....+|.+.|++++|++++.++
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~-----------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTG-----------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC-----------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55555555544444433221 1333334444455555555555443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.016 Score=46.34 Aligned_cols=147 Identities=6% Similarity=-0.041 Sum_probs=98.4
Q ss_pred cccCcCHHHHHHHHHHHHh--cCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh---cCCc--chHHH---HHHHH
Q 043380 11 EHWKLNTIVMNAVIEASRE--AQR---IDEAYQILESVEKGLEPDSLSYNILISACIK---TKKL--DVTMP---FNEQL 77 (246)
Q Consensus 11 ~~~~~~~~~~~~li~~~~~--~g~---~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~---~~~~--~~a~~---~~~~m 77 (246)
...+.+...|...+.+... .++ ..+|..+|++..+--+-....|..+.-+|.- .+.. ..... -+...
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3466778888888876553 333 5789999998764223344555544444431 1111 11111 11111
Q ss_pred HhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHH
Q 043380 78 KDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFG 157 (246)
Q Consensus 78 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 157 (246)
... ..-+.+..+|..+...+...|++++|...+++... . .|+...|..+-..+...|++++ |.+.|+
T Consensus 268 ~a~------~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-L--n~s~~a~~llG~~~~~~G~~~e----A~e~~~ 334 (372)
T 3ly7_A 268 VTL------PELNNLSIIYQIKAVSALVKGKTDESYQAINTGID-L--EMSWLNYVLLGKVYEMKGMNRE----AADAYL 334 (372)
T ss_dssp HTC------GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHHTTCHHH----HHHHHH
T ss_pred Hhc------ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHCCCHHH----HHHHHH
Confidence 111 12356778888887777778999999999999999 3 4888888888899999999999 999999
Q ss_pred HHHHhhcCCCCCCcchhhHH
Q 043380 158 EIVKRVCSNPGLWPKPHLYV 177 (246)
Q Consensus 158 ~m~~~~~~~~~~~p~~~~~~ 177 (246)
+.... .|...||.
T Consensus 335 ~AlrL-------~P~~~t~~ 347 (372)
T 3ly7_A 335 TAFNL-------RPGANTLY 347 (372)
T ss_dssp HHHHH-------SCSHHHHH
T ss_pred HHHhc-------CCCcChHH
Confidence 98875 56666544
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.0056 Score=38.50 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 23 VIEASREAQRIDEAYQILESVEKGLEPDSL-SYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
....+.+.|++++|.+.|+...+..+.+.. .|..+-.+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345667788888888888876543344566 7778888888888888888888888875
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.73 E-value=0.0048 Score=38.81 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=45.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HH-HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RS-TFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
....+.+.|++++|...|+...+ ..|+ .. .+..+..+|...|++++ |...|+...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~----A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQK----ALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhc
Confidence 34556778899999999998887 3454 56 78888888888999999 99999988876
No 217
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.68 E-value=0.066 Score=44.77 Aligned_cols=126 Identities=5% Similarity=0.020 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHH--HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 17 TIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYN--ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
..+|-..+....+.+.++.|..+|+..+ .-..+...|- +.+.... .++.+.|.++|+...+. .+-+..
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~--------~~~~~~ 355 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLK--------HPDSTL 355 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHH--------CTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHH--------CCCCHH
Confidence 3567777777778899999999999883 1112333443 3333322 33699999999999886 222344
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.+...+....+.|+.+.|..+|++... ....|...+..-...|+.+. +..++++....
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~----~r~v~~~~~~~ 413 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMEL----FRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHH
Confidence 566677777889999999999999733 57788888888888899999 99989888764
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.64 E-value=0.051 Score=43.39 Aligned_cols=138 Identities=10% Similarity=-0.035 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---CcchHHHHHHHHHhccCCCCCCCCCcc-HHHHHHHHHHHHc----cC-C---HHH
Q 043380 46 GLEPDSLSYNILISACIKT--K---KLDVTMPFNEQLKDNGQKCSSGGFHPD-IFTYATLLMGFRH----AK-D---LQS 111 (246)
Q Consensus 46 ~~~~~~~t~~~li~~~~~~--~---~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ll~~~~~----~~-~---~~~ 111 (246)
+.+.+...|...+++.... + ...+|..+|++.++. .|+ ...|..+.-+|.. .+ . ...
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---------SPEFTYARAEKALVDIVRHSQHPLDEKQLAA 259 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHhccCCCchhhHHH
Confidence 3467788898888776542 2 357899999999986 676 3445544444421 11 1 111
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 112 LLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 112 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
....+........-..+..+|..+...+...|++++ |...+++.... + |+...|..+-..+.-.|++++
T Consensus 260 l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~----A~~~l~rAl~L-----n--~s~~a~~llG~~~~~~G~~~e 328 (372)
T 3ly7_A 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDE----SYQAINTGIDL-----E--MSWLNYVLLGKVYEMKGMNRE 328 (372)
T ss_dssp HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH-----C--CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHhc-----C--CCHHHHHHHHHHHHHCCCHHH
Confidence 112222222211124458888888888888899999 99999999997 4 788888888899999999999
Q ss_pred HhhHHHhhCCCC
Q 043380 192 VKSPYRRMWPDS 203 (246)
Q Consensus 192 a~~~~~~~~~~~ 203 (246)
|.+.+++....+
T Consensus 329 A~e~~~~AlrL~ 340 (372)
T 3ly7_A 329 AADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC
Confidence 999999876543
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.043 Score=38.92 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=31.1
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
...|+++.|.++.+.+. +...|..|.......|+++- |.++|.....
T Consensus 16 L~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~l----Ae~cy~~~~D 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASL----AEMIYQTQHS 62 (177)
T ss_dssp HHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHH----HHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHH----HHHHHHHhCC
Confidence 44577777777765541 46667777777777777777 7777766543
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.38 E-value=0.038 Score=35.35 Aligned_cols=76 Identities=12% Similarity=-0.060 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 49 PDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
.+..-+-.|...+.+.++++.|..+|+...+.-... ...-.+....+..|..+|.+.|+++.|..++++..+ +.|+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~-~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~---l~P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE---LDPE 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc-CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCC
Confidence 355566778888889999999999999887641000 001134567899999999999999999999999988 6676
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.32 E-value=0.026 Score=35.48 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=56.5
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 14 KLNTIVMNAVIEASREAQR---IDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
+.|+..+..+..++...++ .++|..+|++..+--+-++.....+-..+...|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888888888876555 799999999876444667888889999999999999999999999987
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.25 E-value=0.049 Score=37.65 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHhccCCCCCCCCCc--cHHHHHHHHHHHHccC
Q 043380 33 IDEAYQILESVEKGLEPDSLSYNILISACIKTK---KLDVTMPFNEQLKDNGQKCSSGGFHP--DIFTYATLLMGFRHAK 107 (246)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~ 107 (246)
+..+++-|.+....-.++..+.-.+--++++++ +.+++..++++..+. . .| +...+-.|--+|.+.|
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~-~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------G-SKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------S-CHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------C-CccchHHHHHHHHHHHHHcc
Confidence 455566665543222466666666667777777 556888888888876 2 24 2445555666678888
Q ss_pred CHHHHHHHHHHHHhCCCCCCC
Q 043380 108 DLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~p~ 128 (246)
++++|.+.++.+.+ +.|+
T Consensus 86 ~Y~~A~~y~~~lL~---ieP~ 103 (152)
T 1pc2_A 86 EYEKALKYVRGLLQ---TEPQ 103 (152)
T ss_dssp CHHHHHHHHHHHHH---HCTT
T ss_pred CHHHHHHHHHHHHh---cCCC
Confidence 88888888888888 6675
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.15 E-value=0.049 Score=37.63 Aligned_cols=84 Identities=13% Similarity=-0.022 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcC---ChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCC
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARV---DYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ 228 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 228 (246)
+.+-|.+..+. + .++..+...+-.++++++ +++++..+|+.+.+.. .|...+..+-.|.-+|.+.|+
T Consensus 17 ~~~~y~~e~~~-----~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 17 FEKKFQSEKAA-----G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHT-----T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcc-----C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccC
Confidence 66666666554 3 378888888888999988 6779999999987643 232223366677788899999
Q ss_pred hhHHHHHHHHHHhhccC
Q 043380 229 VDLALDKLSNTITRWKG 245 (246)
Q Consensus 229 ~~~a~~~~~~m~~~g~~ 245 (246)
+++|.++++.+.+..|+
T Consensus 87 Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999876553
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.10 E-value=0.095 Score=32.84 Aligned_cols=66 Identities=6% Similarity=-0.035 Sum_probs=54.4
Q ss_pred CccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 90 HPDIFTYATLLMGFRHAKD---LQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+.|...+..+-.++...++ .++|..++++... ..|+ ......+...+...|++++ |...|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~rA~~~lg~~~~~~g~y~~----Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNEAALSLIANDHFISFRFQE----AIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhh
Confidence 3456677777777754444 7999999999998 6677 7788888999999999999 99999999886
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.66 E-value=0.11 Score=33.05 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=55.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEK-------GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
..++.-+-.|-..+.+.|+++.|...|+...+ .-.+....+..+..++.+.|+++.|...+++..+.
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35666777899999999999999999987532 11345677899999999999999999999999875
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.60 E-value=0.18 Score=38.84 Aligned_cols=79 Identities=10% Similarity=-0.007 Sum_probs=66.9
Q ss_pred chHHHHHHHHHhccCCCCCCCCCcc---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHH
Q 043380 68 DVTMPFNEQLKDNGQKCSSGGFHPD---IFTYATLLMGFRHA-----KDLQSLLEIVFEMKSCCNLILD--RSTFTAMVD 137 (246)
Q Consensus 68 ~~a~~~~~~m~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~ 137 (246)
..|...+++.++. .|+ ...|..|...|.+. |+.++|.+.|++..+ +.|+ ..++.....
T Consensus 180 ~~A~a~lerAleL---------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~ 247 (301)
T 3u64_A 180 HAAVMMLERACDL---------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHH---------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHH
Confidence 5677777777765 676 56899999999985 999999999999999 6673 677888889
Q ss_pred HHHhc-CChhhhhhHHHHHHHHHHHh
Q 043380 138 ALLYS-GSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 138 ~~~~~-~~~~~~~~~a~~~~~~m~~~ 162 (246)
.++.. |+.+. +.+.+++..+.
T Consensus 248 ~l~~~~gd~~~----a~~~L~kAL~a 269 (301)
T 3u64_A 248 ALCIPLNNRAG----FDEALDRALAI 269 (301)
T ss_dssp HTTTTTTCHHH----HHHHHHHHHHC
T ss_pred HHHHhcCCHHH----HHHHHHHHHcC
Confidence 99885 99999 99999999886
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.39 Score=33.99 Aligned_cols=131 Identities=17% Similarity=0.156 Sum_probs=95.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGF 103 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~ 103 (246)
.......|+++.|.++.+.+ .+...|..|-......|+++-|++.|.+...- ..|.-.|
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~~L~~Ly 70 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------DKLSFLY 70 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------HHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------HHHHHHH
Confidence 34556789999999998876 35678999999999999999999999997653 4666777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 043380 104 RHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183 (246)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~ 183 (246)
...|+.++...+-+.... .|- ++.-...+...|++++ +.++|.+. |..|....+ .
T Consensus 71 ~~tg~~e~L~kla~iA~~-~g~------~n~af~~~l~lGdv~~----~i~lL~~~--------~r~~eA~~~------A 125 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQT-RED------FGSMLLNTFYNNSTKE----RSSIFAEG--------GSLPLAYAV------A 125 (177)
T ss_dssp HHHTCHHHHHHHHHHHHH-TTC------HHHHHHHHHHHTCHHH----HHHHHHHT--------TCHHHHHHH------H
T ss_pred HHhCCHHHHHHHHHHHHH-Ccc------HHHHHHHHHHcCCHHH----HHHHHHHC--------CChHHHHHH------H
Confidence 778988887766655555 331 5666666777899999 99888554 333432211 1
Q ss_pred HhcCChhHHhhHHHhhC
Q 043380 184 AARVDYDIVKSPYRRMW 200 (246)
Q Consensus 184 ~~~g~~~~a~~~~~~~~ 200 (246)
...|..+.|.++.+++.
T Consensus 126 ~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 126 KANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHTTCHHHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHHhC
Confidence 23667788888888764
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.14 E-value=0.41 Score=31.79 Aligned_cols=84 Identities=13% Similarity=-0.038 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH---HhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCC
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI---VKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ 228 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 228 (246)
+.+-|...... |. |+..+-..+..++.++.+... +..+++.+...+ .|...+...-.|.-++.+.|+
T Consensus 20 ~~~~y~~e~~~-----~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 20 FEKKFQSEKAA-----GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHH-----SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcc-----CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhh
Confidence 66666666554 33 777777788888888887665 999999987652 232333356667788999999
Q ss_pred hhHHHHHHHHHHhhccC
Q 043380 229 VDLALDKLSNTITRWKG 245 (246)
Q Consensus 229 ~~~a~~~~~~m~~~g~~ 245 (246)
+++|.++++.+.+..++
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999876653
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.00 E-value=0.5 Score=31.99 Aligned_cols=62 Identities=23% Similarity=0.083 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
..+...+..+...|.-++-.+++..+.. +-.|++...-.+..+|.+.|+..+ |.+++.+.-+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~----a~eLl~~AC~ 153 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERD----ATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhh----HHHHHHHHHH
Confidence 3445555666666666666666666432 134555555566666666666666 6666655544
No 230
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.87 E-value=0.14 Score=32.44 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=38.6
Q ss_pred HhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 043380 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS 59 (246)
Q Consensus 9 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~ 59 (246)
....+-|++.+..+.+.+|-|.+++..|.++|+-++..+.+....|..++.
T Consensus 37 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 37 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 334478888888999999999999999999998887445555556776654
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.58 E-value=0.66 Score=31.40 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=96.3
Q ss_pred HHHHHHH--HHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH
Q 043380 54 YNILISA--CIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131 (246)
Q Consensus 54 ~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 131 (246)
...||.+ ..-.|..++..++..+.... .+..-||.+|--....-+=+-..++++.+-+...+.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s----------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----- 72 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS----------STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----- 72 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG-----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC----------CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH-----
Confidence 3444444 23467888888888888775 456677777777777777777777777776633222
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchh
Q 043380 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEV 211 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 211 (246)
.+|++.. ....+-.+. .+..-+..-++.+..+|+-|+..++...+..... +.|.
T Consensus 73 ---------~C~NlKr----Vi~C~~~~n----------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~--~~~~- 126 (172)
T 1wy6_A 73 ---------KCQNLKS----VVECGVINN----------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNE--VSAS- 126 (172)
T ss_dssp ---------GCSCTHH----HHHHHHHTT----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC--SCHH-
T ss_pred ---------hhhcHHH----HHHHHHHhc----------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCC--CChH-
Confidence 2455555 444443331 1334455566777788888888888888654321 3333
Q ss_pred hhHHHHHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 212 QEEAGHLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
..-.+..+|.+.|+..+|.+++.+..++|.
T Consensus 127 ---~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 127 ---ILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 356678888899999999999888888773
No 232
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.54 E-value=0.51 Score=29.95 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=57.3
Q ss_pred HHHHHccC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHH
Q 043380 100 LMGFRHAK-DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178 (246)
Q Consensus 100 l~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 178 (246)
..-+.+.. |.-++.+-++.+.. ..+.|++....+.+++|.+.+++.. |.++|+.++.+ ..+...+|..
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~al----AVR~lE~iK~K------~~~~~~iY~~ 84 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFAS----AVRILEVVKDK------AGPHKEIYPY 84 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------TTTCTTHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHH----HHHHHHHHHHH------hcCchhhHHH
Confidence 33344555 66778888888888 8899999999999999999999999 99999999987 4444556777
Q ss_pred HHHH
Q 043380 179 MMHE 182 (246)
Q Consensus 179 li~~ 182 (246)
++.-
T Consensus 85 ~lqE 88 (109)
T 1v54_E 85 VIQE 88 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.02 E-value=1.8 Score=34.89 Aligned_cols=101 Identities=7% Similarity=0.004 Sum_probs=51.6
Q ss_pred HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC-CCCchhh
Q 043380 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG-TISPEVQ 212 (246)
Q Consensus 134 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~ 212 (246)
-+...|...|++.+ |..++..+.+....-..-.--...+..-+..|...+++.++...+......... ..+|.+.
T Consensus 104 kL~~l~~~~~~y~~----a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 104 RLIALYFDTALYTE----ALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHTTCHHH----HHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhhhHHH----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 46667777777777 777777776641100000011134555666677777777777777655421111 1333332
Q ss_pred hHHHHHHHHHHH-hcCChhHHHHHHHH
Q 043380 213 EEAGHLLMEAAL-NDGQVDLALDKLSN 238 (246)
Q Consensus 213 ~~~~~~li~~~~-~~g~~~~a~~~~~~ 238 (246)
......--..+. ..+++..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 222222222344 56777777666544
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.83 E-value=1 Score=34.76 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=83.4
Q ss_pred hHHHHhccc--CcCHHHHHHHHH-HHHhc--CC------HHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhc-----C
Q 043380 5 NEIVNREHW--KLNTIVMNAVIE-ASREA--QR------IDEAYQILESVEKGLEPD---SLSYNILISACIKT-----K 65 (246)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~li~-~~~~~--g~------~~~a~~~~~~~~~~~~~~---~~t~~~li~~~~~~-----~ 65 (246)
++.+....- .+....|..++. .++.. |. ...|..++++... +.|+ ...|..+...|.+. |
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle-LDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD-LWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH-hCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 344444442 233445665554 33432 32 4556666666542 3555 56899999999995 9
Q ss_pred CcchHHHHHHHHHhccCCCCCCCCCc--cHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCC--CCHHHHHHHH
Q 043380 66 KLDVTMPFNEQLKDNGQKCSSGGFHP--DIFTYATLLMGFRHA-KDLQSLLEIVFEMKSCCNLI--LDRSTFTAMV 136 (246)
Q Consensus 66 ~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~--p~~~~~~~li 136 (246)
+.++|.+.|++.++. .| +..++...-..+++. |+.+++.+.+++... .... |+....+.+-
T Consensus 219 d~ekA~~~ferAL~L---------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~-a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 219 GMEKAHTAFEHLTRY---------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALA-IDPESVPHNKLLVILS 284 (301)
T ss_dssp CHHHHHHHHHHHHHH---------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-CCGGGCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCCCCCCChhHHHHHH
Confidence 999999999999986 56 367888888888884 999999999999999 6665 6655555443
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.82 E-value=0.36 Score=38.92 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=80.8
Q ss_pred cCcCHHHHHHHHHHHH---hcCCHHHHHHHHHHHH---hCC-CCCH------H------------HHHHHHHHHHhcCCc
Q 043380 13 WKLNTIVMNAVIEASR---EAQRIDEAYQILESVE---KGL-EPDS------L------------SYNILISACIKTKKL 67 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~~~---~~~-~~~~------~------------t~~~li~~~~~~~~~ 67 (246)
...|...|..++.... ..|+.+.|.+.+++.. +|- -++. . ....++.++...|++
T Consensus 108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA 187 (388)
T ss_dssp GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 3456777777776543 3578888888887753 221 1111 1 123455667788999
Q ss_pred chHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCCHHHH
Q 043380 68 DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS----CCNLILDRSTF 132 (246)
Q Consensus 68 ~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~p~~~~~ 132 (246)
++|......+... -+-+...|..+|.++.+.|+..+|++.|+...+ ..|+.|+..+-
T Consensus 188 ~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 188 SAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 9999999998875 355788999999999999999999999998654 25899987653
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.46 E-value=0.85 Score=30.27 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=53.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHhccCCCCCCCCCc--cHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV---TMPFNEQLKDNGQKCSSGGFHP--DIFTYA 97 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~p--~~~~~~ 97 (246)
+..-.....+..+.+-|.... .+ .|+..+--.+--++.++...+. +..+++++... + .| .....-
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~-~p~~~Rd~lY 78 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------G-SKEEQRDYVF 78 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------S-CHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------C-CcchHHHHHH
Confidence 333333444555555565443 33 3555554444555566665544 77777777764 2 23 233444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
.|--++.+.|++++|.+.++.+.+ +.|+
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~---~eP~ 106 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQ---TEPQ 106 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH---hCCC
Confidence 455566778888888888888877 5564
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.43 E-value=0.48 Score=38.20 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
....++..+...|+.++|...+..+....+-+...|..+|.++.+.|+..+|++.|++....= ..+.|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L--~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL--ADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--HHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHHhCCCCCHHH
Confidence 344567778889999999999988764457788999999999999999999999999876420 001277887765
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.41 E-value=2.8 Score=34.44 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHh------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH--HHHHHHHH
Q 043380 31 QRIDEAYQILESVEK------GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF--TYATLLMG 102 (246)
Q Consensus 31 g~~~~a~~~~~~~~~------~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~--~~~~ll~~ 102 (246)
|+++.|++.+-.+.+ ...........++..|...++++...+.+.-+... +|-.+... ..+.++..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk------r~qlk~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK------HGQLKLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT------TTTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHH
Confidence 678888887766542 23344566788999999999999998888776654 24333332 23333443
Q ss_pred HHccCCHHH--HHHHHHHHHhC--CCCCC---CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc---
Q 043380 103 FRHAKDLQS--LLEIVFEMKSC--CNLIL---DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK--- 172 (246)
Q Consensus 103 ~~~~~~~~~--a~~~~~~m~~~--~~~~p---~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~--- 172 (246)
.......+. -..+.+..... ..+.. .......|...|-..|++.+ |.+++..+..... +..+.
T Consensus 104 l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~e----A~~iL~~l~~Et~---~~~~~~~k 176 (445)
T 4b4t_P 104 LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDE----AADILCELQVETY---GSMEMSEK 176 (445)
T ss_dssp HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHC---SSSCHHHH
T ss_pred HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHHHH---hcccHHHH
Confidence 333333332 22233222210 11212 22345678889999999999 9999999875411 11111
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCC-CCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWP-DSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
...+..-++.|...+++.+|..++.++.. ......+|.....-|...+..+...+++.+|.+.|.+..+
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 25677788999999999999999998742 1112244555445678888888899999999988887643
No 239
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.25 E-value=0.4 Score=32.19 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=36.2
Q ss_pred hcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 043380 10 REHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILIS 59 (246)
Q Consensus 10 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~ 59 (246)
...+-|++.+..+.+.+|-|.+++..|.++|+-++..+.+....|..++.
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33477888888888888888888888888888887445555556666554
No 240
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.25 E-value=1.2 Score=29.87 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=54.0
Q ss_pred HccC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 043380 104 RHAK-DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHE 182 (246)
Q Consensus 104 ~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~ 182 (246)
.+.. |.-+..+-++.+.. ..+.|++....+-+++|.+.+++.. |.++|+.++.+ ..+...+|..+++-
T Consensus 63 ~~~~iD~wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfal----AVR~lE~vK~K------~~~~~~iY~y~lqE 131 (152)
T 2y69_E 63 NKPDIDAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFAS----AVRILEVVKDK------AGPHKEIYPYVIQE 131 (152)
T ss_dssp TCTTCCHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------TTTCTTHHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHH----HHHHHHHHHHh------cCCchhhHHHHHHH
Confidence 3444 55567777888888 8899999999999999999999999 99999999887 45555667776643
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.75 E-value=1.6 Score=29.98 Aligned_cols=116 Identities=12% Similarity=0.160 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHhccCCCCCCCCCccHH----HHHHHHHH---HHccCCHHHHHH
Q 043380 48 EPDSLSYNILISACIKTKKL------DVTMPFNEQLKDNGQKCSSGGFHPDIF----TYATLLMG---FRHAKDLQSLLE 114 (246)
Q Consensus 48 ~~~~~t~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~~~~p~~~----~~~~ll~~---~~~~~~~~~a~~ 114 (246)
+-|..+|=..+...-+.|++ +...++|++.... ++|+.. .|--|.-- +...+|+++|.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--------~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~ 81 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--------LPPDKYGQNESFARIQVRFAELKAIQEPDDARD 81 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--------SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--------CCccccccHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44667777777777777888 8888999988885 666531 11111111 123489999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 043380 115 IVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL 183 (246)
Q Consensus 115 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~ 183 (246)
+|+.+.+ .+-.. ...|-....--.+.|++.. |.+++...... +-+|. ..+.+.|..+
T Consensus 82 vy~~a~~-~hKkF-AKiwi~~AqFEiRqgnl~k----ARkILg~AiG~-----~~k~~-~~le~a~~nl 138 (161)
T 4h7y_A 82 YFQMARA-NCKKF-AFVHISFAQFELSQGNVKK----SKQLLQKAVER-----GAVPL-EMLEIALRNL 138 (161)
T ss_dssp HHHHHHH-HCTTB-HHHHHHHHHHHHHTTCHHH----HHHHHHHHHHT-----TCBCH-HHHHHHHHHH
T ss_pred HHHHHHH-HhHHH-HHHHHHHHHHHHHcccHHH----HHHHHHHHhcc-----CCCcH-HHHHHHHHhh
Confidence 9999977 33333 7778788888888999999 99999999886 44443 4445555443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.62 E-value=1.1 Score=39.44 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCC-cchHHHHHHHHHhccCCCCCCCCCccHHH--HHHHHHHHHccCC-HHHHHHHHHHHHhC-----CCC
Q 043380 55 NILISACIKTKK-LDVTMPFNEQLKDNGQKCSSGGFHPDIFT--YATLLMGFRHAKD-LQSLLEIVFEMKSC-----CNL 125 (246)
Q Consensus 55 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~-~~~a~~~~~~m~~~-----~~~ 125 (246)
..+++.+...++ .+.|..+|+++... .|...+ ...++..+...++ --+|.+++.+..+. ...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---------~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l 322 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---------DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDL 322 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---------CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---------CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhh
Confidence 445555555666 58899999999886 453332 2334444333332 23344444443220 011
Q ss_pred CCC-H----------HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch-hhHHHHHHHHHhcCChhHHh
Q 043380 126 ILD-R----------STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP-HLYVSMMHELAARVDYDIVK 193 (246)
Q Consensus 126 ~p~-~----------~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~ 193 (246)
.+. . ...+.-..-|...|+++. |+.+-++.... .|+. .+|..|..+|...|+++.|.
T Consensus 323 ~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~el----AL~~Ak~AV~~-------aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 323 PPRDADSARLMNCMSDLLNIQTNFLLNRGDYEL----ALGVSNTSTEL-------ALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------CSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccccccCcchHHHHHHHHHHhccCcHHH----HHHHHHHHHhc-------CchhhHHHHHHHHHHHHhccHHHHH
Confidence 111 1 122223445667899999 99999998775 5664 89999999999999999999
Q ss_pred hHHHhhC
Q 043380 194 SPYRRMW 200 (246)
Q Consensus 194 ~~~~~~~ 200 (246)
-.++.+-
T Consensus 392 LtLNScP 398 (754)
T 4gns_B 392 FAINSMP 398 (754)
T ss_dssp HHHHHSC
T ss_pred HHHhcCC
Confidence 9999884
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.61 E-value=1.9 Score=38.00 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=75.9
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCH-HHHHH-HHHHHHhcC-CcchHHHHHHHHHhccCCCCCCCCCc-cH---
Q 043380 22 AVIEASREAQR-IDEAYQILESVEKGLEPDS-LSYNI-LISACIKTK-KLDVTMPFNEQLKDNGQKCSSGGFHP-DI--- 93 (246)
Q Consensus 22 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~-~t~~~-li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~p-~~--- 93 (246)
.++..+...++ ++.|..+|+.+... .|.. ..+.. ++..+...+ +--+|..++.+..+.-.... ....+ +.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~-~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~-~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK-DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLL-NDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHH-HTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh-hhhcccccccc
Confidence 34444444556 68899999998743 3433 33332 333222222 12234444444432100000 00111 11
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHH
Q 043380 94 -------FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEI 159 (246)
Q Consensus 94 -------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m 159 (246)
...+.-..-+...|+++-|+.+-++... +.|+ -.+|..|..+|...|+++. |+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~----ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEK----ALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHH----HHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHH----HHHHHhcC
Confidence 1111222335678999999999999888 6788 6789999999999999999 99999887
No 244
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.18 E-value=1.6 Score=35.61 Aligned_cols=101 Identities=12% Similarity=-0.135 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCCHH
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSC--CNLILDRS 130 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~ 130 (246)
+...+...|.+.|++++|.+.|.++.... .+...-...+-.+++.+...+|+..+...++..... .+-.|+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-----~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-----ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-----TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 56678888999999999999999998752 122334568889999999999999999999887552 22223321
Q ss_pred H--HHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 131 T--FTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 131 ~--~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
. ...-...+...+++.. |-..|-+....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~----Aa~~f~e~~~t 237 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKE----AAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHH----HHHHHHHHhcc
Confidence 1 1122223456788999 88888887665
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.22 E-value=9 Score=35.60 Aligned_cols=198 Identities=10% Similarity=-0.004 Sum_probs=116.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCC--------------
Q 043380 22 AVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSG-------------- 87 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------------- 87 (246)
.++..+.+.+..+.|.++.... +.+...--.+-.+|...|++++|..+|.+.-.. +.....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhccccccccc
Confidence 4555666677777666654443 334444445566788899999999999875321 100000
Q ss_pred --CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-C--HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 88 --GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-D--RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 88 --~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
....-..-|..++..+-+.+.++.+.++-....+..+-.+ + ...|+.+..++...|++++ |...+-.+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~----Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA----AHVALMVLSTT 967 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG----GGHHHHHHHHS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH----HHHHHHhCCCH
Confidence 0011123477888889999999988887766554122211 1 1258899999999999999 99888877664
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCCh------------hHHhhHHHhhCCC--CCCCCCchhhhHHHHHHHHHHHhcCC
Q 043380 163 VCSNPGLWPKPHLYVSMMHELAARVDY------------DIVKSPYRRMWPD--STGTISPEVQEEAGHLLMEAALNDGQ 228 (246)
Q Consensus 163 ~~~~~~~~p~~~~~~~li~~~~~~g~~------------~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~ 228 (246)
..+ ......||...|..|.. +++.+++..--.. ... -.|. -|..|-..+...|+
T Consensus 968 -----~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~-~~p~----Yy~iLYs~ri~r~d 1035 (1139)
T 4fhn_B 968 -----PLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVE-SQPC----WYNILFSWRYKHQN 1035 (1139)
T ss_dssp -----SSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHC-CSTH----HHHHHHHHHHHHHT
T ss_pred -----HHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccc-cCCC----HHHHhHhhhhccCC
Confidence 332 34455666666666544 3444444332110 001 1111 24555555677788
Q ss_pred hhHHHHH-HHHHH
Q 043380 229 VDLALDK-LSNTI 240 (246)
Q Consensus 229 ~~~a~~~-~~~m~ 240 (246)
+.+|-.+ |+...
T Consensus 1036 yR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1036 YRDAAAIIYEKLS 1048 (1139)
T ss_dssp TSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8766555 45443
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.02 E-value=1.8 Score=35.31 Aligned_cols=104 Identities=11% Similarity=-0.044 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCc
Q 043380 130 STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISP 209 (246)
Q Consensus 130 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 209 (246)
.+...+...|.+.|+++. |.+++.++.... . +..--...+-.+|..+...+++..+...+.+..........+
T Consensus 132 ~~~~~la~~~~~~Gd~~~----A~~~~~~~~~~~-~--~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~ 204 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDN----AEKTLGKSLSKA-I--STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW 204 (429)
T ss_dssp SCCHHHHHHHHHHCCCTT----HHHHHHHHHHHH-T--CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhc-C--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence 357778999999999999 999999998862 1 222334678889999999999999999999875211111122
Q ss_pred hhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 210 EVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
.........-...+...+++..|.+.|-+..
T Consensus 205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 2211111122223456788999988887653
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.37 E-value=16 Score=33.96 Aligned_cols=150 Identities=9% Similarity=-0.014 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL-------- 127 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-------- 127 (246)
.++..+...+.++.+.++.... +-+...--.+-.+|...|++++|.+.|.+... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~ 882 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVL 882 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhh
Confidence 3445555666666665544322 22333334566778899999999999987532 2211
Q ss_pred ---------------CHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc--hhhHHHHHHHHHhcCChh
Q 043380 128 ---------------DRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK--PHLYVSMMHELAARVDYD 190 (246)
Q Consensus 128 ---------------~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~ 190 (246)
-..=|..++..+-+.+.++. +.++-+...+... .-.++ ...|..+.+++...|+++
T Consensus 883 ~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~----vi~fa~lAi~~~~---~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 883 REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID----ALEFSLLADASKE---TDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH----HHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred cccccccccccccccHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcc---CCChhhHHHHHHHHHHHHHhhCCHH
Confidence 11236678888888999998 7777776665410 11122 236889999999999999
Q ss_pred HHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHH
Q 043380 191 IVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLAL 233 (246)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 233 (246)
+|...+-.+.... ... .....|+..++..|..+.-.
T Consensus 956 ~Ay~aL~~~pd~~---~r~----~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 956 AAHVALMVLSTTP---LKK----SCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGGHHHHHHHHSS---SCH----HHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHhCCCHH---HHH----HHHHHHHHHHHhCCChhhhh
Confidence 9999998875322 121 25677777777777665543
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.14 E-value=9.7 Score=31.20 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-h--CCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVE-K--GLEPD---SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~-~--~~~~~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
....|...|-..|++.+|.+++..+. . +..+. ...+..-++.|...+++..|..++.+....... ....|+
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~---~~~~~~ 215 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK---NPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---SSCCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc---cCCcHH
Confidence 34567888999999999999999885 2 22121 345777888999999999999999987532100 022333
Q ss_pred --HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 93 --IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTF----TAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 93 --~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~----~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
...|...+..+...+++.+|-..|.+........-|...+ ..++....-.+.... -.++.......
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~----~~~ll~~~~~~---- 287 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNL----QNDLIHKIQND---- 287 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSST----THHHHHSHHHH----
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHhhc----
Confidence 2467777788888999999988888776522222233222 222222222333333 34445555444
Q ss_pred CCCCcchhhHHHHHHHHHhc--CChhHHhhHHHhhCCC
Q 043380 167 PGLWPKPHLYVSMMHELAAR--VDYDIVKSPYRRMWPD 202 (246)
Q Consensus 167 ~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~ 202 (246)
...++...|..++.+|... .+++.+.+.|......
T Consensus 288 -~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 288 -NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred -ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 3346778899999998764 4567777777665433
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.03 E-value=5.7 Score=27.33 Aligned_cols=114 Identities=7% Similarity=0.002 Sum_probs=79.7
Q ss_pred CcCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCHHH-HHHHHHH---H---HhcCCcchHHHHHHHHHhc
Q 043380 14 KLNTIVMNAVIEASREAQRI------DEAYQILESVEKGLEPDSLS-YNILISA---C---IKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~t-~~~li~~---~---~~~~~~~~a~~~~~~m~~~ 80 (246)
+-|..+|=..+...-+.|++ ++.+++|++.-..++|+... |..-+.. | ...+++++|.++|+.++..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45778888888888888999 89999999887667776421 1111111 1 2347999999999999875
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 043380 81 GQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVD 137 (246)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 137 (246)
+ ..+ ...|.....--.+.|+.+.|.+++..... .+-.| .......|+
T Consensus 90 h-----KkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 90 C-----KKF---AFVHISFAQFELSQGNVKKSKQLLQKAVE-RGAVP-LEMLEIALR 136 (161)
T ss_dssp C-----TTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBC-HHHHHHHHH
T ss_pred h-----HHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCc-HHHHHHHHH
Confidence 1 123 66666666667899999999999999988 55444 333444443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.93 E-value=6.1 Score=27.53 Aligned_cols=69 Identities=7% Similarity=-0.067 Sum_probs=45.6
Q ss_pred ccCcCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH--hCCCCCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 12 HWKLNTIVMNA--VIEASREAQRIDEAYQILESVE--KGLEPDS-------LSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 12 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~~~--~~~~~~~-------~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
|..|....|+. -+..+...|.++.|+-+.+.+. .+..|+. .++..+.+++...+++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34444444433 3777888999999998887753 2234442 35677888899999999999999997654
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.01 E-value=4.9 Score=30.48 Aligned_cols=118 Identities=10% Similarity=-0.016 Sum_probs=79.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHH
Q 043380 25 EASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR 104 (246)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~ 104 (246)
....+.|++++|++....-.+..+-|...-..++..+|-.|+++.|.+-++...+.. ....|...+|-.+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-----p~~~~~a~~yr~lI~aE- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-----PEYLPGASQLRHLVKAA- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhhHHHHHHHHHHHHH-
Confidence 456788999999998866544457788889999999999999999999888887751 12233444566666552
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHh--cCChhhhhhHHHHHHHHHHHh
Q 043380 105 HAKDLQSLLEIVFEMKSCCNLIL-----DRSTFTAMVDALLY--SGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~--~~~~~~~~~~a~~~~~~m~~~ 162 (246)
..=.+... .+-.| ...-...++.+... .|+.+. |.++-.+..+.
T Consensus 79 ---------~~R~~vfa-G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~----A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ---------QARKDFAQ-GAATAKVLGENEELTKSLVSFNLSMVSQDYEQ----VSELALQIEEL 129 (273)
T ss_dssp ---------HHHHHHTT-SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH
T ss_pred ---------HHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHH----HHHHHHHHHhc
Confidence 22222222 22222 23334556665554 589999 99888888776
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.33 E-value=6.5 Score=26.29 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=51.4
Q ss_pred CcchhhHHHHHHHHHhcCCh---hHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhccC
Q 043380 170 WPKPHLYVSMMHELAARVDY---DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRWKG 245 (246)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 245 (246)
.|+..|--....++.++.+. .++..+++++...+ |...+...-.|.-++.+.|++++|.++.+.+.+..++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 45666666666677777654 57888888887543 3223336677888999999999999999999876553
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.60 E-value=6.2 Score=27.50 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=53.1
Q ss_pred CCCcch--hhHHHHHHHHHhcCChhHHhhHHHhhC---CCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 168 GLWPKP--HLYVSMMHELAARVDYDIVKSPYRRMW---PDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 168 ~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
|+.|-. .++-.=+..+...|.++.|+-+.+.+. ..+....+|.....+...+.+++...|++.+|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 555554 344555677788889998887777644 333344567766667888999999999999999999997665
Q ss_pred cc
Q 043380 243 WK 244 (246)
Q Consensus 243 g~ 244 (246)
.+
T Consensus 93 ~k 94 (167)
T 3ffl_A 93 KK 94 (167)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.51 E-value=29 Score=31.58 Aligned_cols=196 Identities=10% Similarity=-0.023 Sum_probs=87.6
Q ss_pred HHhcCCHHHHHHHHHHHH-hCCCCCHHHHH--HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCC--CccHHHHHHHHH
Q 043380 27 SREAQRIDEAYQILESVE-KGLEPDSLSYN--ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGF--HPDIFTYATLLM 101 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~p~~~~~~~ll~ 101 (246)
....|++++++.++.... .+...+..+-. .+--+....|..+++.+++.......... .|- .+....-.++--
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~--~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGT--SGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSC--CSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccc--ccccccHHHHHHHHHHH
Confidence 334555555555554432 11012223222 22233445565566777777666531000 000 122223333333
Q ss_pred HHHccCC-HHHHHHHHHHHHhCCCCCCCHHHHHH--HHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHH
Q 043380 102 GFRHAKD-LQSLLEIVFEMKSCCNLILDRSTFTA--MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVS 178 (246)
Q Consensus 102 ~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~--li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 178 (246)
+++-.|. -+++.+.+..+..... +......+ |...++..|+-+. ...+++.+.+. ..-+..-...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~a----i~~LL~~~~e~------~~e~vrR~aa 529 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEA----IHDMFTYSQET------QHGNITRGLA 529 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHH----HHHHHHHHHHC------SCHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHH----HHHHHHHHhcc------CcHHHHHHHH
Confidence 3333332 2344555555444121 11111222 2333445666666 66666665553 1111122222
Q ss_pred HHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 179 MMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
+--++...|+.+.+..+.+.+... ..|.+...+-.++.-+|+..|+.....++++.+.
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLAS----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHhhhCCChHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 333334667777777777776543 2233321123344556677777766666666554
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.47 E-value=18 Score=29.18 Aligned_cols=143 Identities=8% Similarity=0.012 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCC-hhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD---RSTFTAMVDALLYSGS-IKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
.....|...|.+.|+.++..+++...+.-.+..|- ......++..+....+ .+. -.++..+..+-...+..+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~r~ 95 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGI----EVQLCKDCIEWAKQEKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHH----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHH----HHHHHHHHHHHHHHHHHH
Confidence 36678889999999999999999987762222232 2346678888877543 333 344444433320000000
Q ss_pred CcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 170 WPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
-.....=..+...|...|++.+|.+++..+...-...-.+......|-.-+..|...+++.++...+..-.
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 01111223689999999999999888887663211111123333467778888999999999998887654
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.50 E-value=13 Score=28.18 Aligned_cols=122 Identities=16% Similarity=0.077 Sum_probs=78.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHH
Q 043380 101 MGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMM 180 (246)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li 180 (246)
....+.|+++++++....-.+ . -+-|...=..++..+|-.|+|++ |..-++...+. .|...|-..+|..+|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR-~-~P~da~~R~~LfqLLcv~G~w~R----A~~QL~~~a~l---~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK-A-SPKDASLRSSFIELLCIDGDFER----ADEQLMQSIKL---FPEYLPGASQLRHLV 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH-T-CTTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH---CGGGHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH-h-CCcCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHh---CchhhHHHHHHHHHH
Confidence 456688999999998887777 2 23346667789999999999999 99999888776 233444455666666
Q ss_pred HHHHhcCChhHHhhHHHh-hCCCCCCCCCchhhhHHHHHHHHHHH--hcCChhHHHHHHHHHHhh
Q 043380 181 HELAARVDYDIVKSPYRR-MWPDSTGTISPEVQEEAGHLLMEAAL--NDGQVDLALDKLSNTITR 242 (246)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 242 (246)
.+-.... ++|.- ..+.-.+ .|.. -...|+.+.. ..|+.++|.++-....+.
T Consensus 76 ~aE~~R~------~vfaG~~~P~~~g--~~~~---w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 76 KAAQARK------DFAQGAATAKVLG--ENEE---LTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHH------HHTTSCCCEECCC--SCHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHcCCCCCCCCC--CCHH---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 6543321 12221 1111111 1111 3455666654 469999998887776544
No 257
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=77.40 E-value=23 Score=27.42 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCC--hhHHHHHHHHHHhhc
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ--VDLALDKLSNTITRW 243 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g 243 (246)
.....++.-|...|+.++|.+.++++.. |.......+..+..++-+.++ .+.+.+++..+.+.|
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~------p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEV------PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCC------GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCC------CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 3467888999999999999999999973 222222245566666665433 456778888887655
No 258
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=75.73 E-value=0.019 Score=47.52 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHH
Q 043380 52 LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRST 131 (246)
Q Consensus 52 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 131 (246)
..|.-|-.+..+.++..+|.+-|-+. -|...|..++.+..+.|.+++-...+...++ .. -++..
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA-------------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~--ke~~I 118 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYV 118 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC-------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TC--CSTTT
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC-------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hh--ccccc
Confidence 45666666666666665554433221 2333555666666666666666666555544 22 22333
Q ss_pred HHHHHHHHHhcCChhh
Q 043380 132 FTAMVDALLYSGSIKV 147 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~ 147 (246)
=+.|+.+|++.++..+
T Consensus 119 DteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 119 ETELIFALAKTNRLAE 134 (624)
T ss_dssp THHHHHHHHTSCSSST
T ss_pred HHHHHHHHHhhCcHHH
Confidence 3456666666666555
No 259
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=74.55 E-value=14 Score=28.55 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043380 20 MNAVIEASREAQRIDEAYQILESVE 44 (246)
Q Consensus 20 ~~~li~~~~~~g~~~~a~~~~~~~~ 44 (246)
...+|.-|...|++++|..-++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4678999999999999999999886
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.65 E-value=17 Score=23.08 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 24 IEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
+..+...|++++|+.+.+.+. -||...|-+|-. .+.|-.+++...+.++-.+| .|....|..
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~la~sg--------~p~~q~Fa~ 108 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ--------DPRIQTFVN 108 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC--------CHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC--------CHHHHHHHH
Confidence 345566777777777766554 788888877655 46666677777776776653 455555544
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.39 E-value=21 Score=23.81 Aligned_cols=75 Identities=9% Similarity=0.011 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 124 NLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 124 ~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
+-.|+..+--.+.-+++++.+... ..+++.+++.+.+. +-.-....+--|.-++.+.|++++|.++.+.+....
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d-~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVND-ERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHH-HHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHH-HHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344565554455666666665543 22388888888776 311124556667788889999999999999887654
Q ss_pred C
Q 043380 204 T 204 (246)
Q Consensus 204 ~ 204 (246)
+
T Consensus 109 P 109 (134)
T 3o48_A 109 R 109 (134)
T ss_dssp T
T ss_pred C
Confidence 3
No 262
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=69.83 E-value=6.7 Score=28.21 Aligned_cols=58 Identities=7% Similarity=-0.083 Sum_probs=29.6
Q ss_pred HHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 179 MMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
.+...+..|+.+-+..+++.-...+. .. . .-.+-+....+.|+.+-+..+++.-.+.+
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~-~----~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEAGANVDA--QN-I----KGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTC--BC-T----TSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCC--cC-C----CCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 45555678888877777765321110 00 0 01123445567788777776666544443
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.75 E-value=15 Score=23.25 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=40.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHH
Q 043380 25 EASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATL 99 (246)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 99 (246)
..+...|++++|+.+.+.+. -||...|-+|-. .+.|-.+++...+.++-.+| .|....|..=
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~la~sg--------~p~~q~Fa~g 108 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP---WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS--------DPALADFAAG 108 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS--------SHHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC--------CHHHHHHHHH
Confidence 34556677777776655554 788888877754 46777777777777777763 5555555443
No 264
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.38 E-value=28 Score=23.73 Aligned_cols=69 Identities=9% Similarity=0.182 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCCHHH
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD--LQSLLEIVFEMKSCCNLILDRST 131 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~ 131 (246)
.+.+|.-|...++.++|...++++..- . -....+...+..++-+.++ .+.+..++..+.. .|+.+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p-------~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~-~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP-------H-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-------G-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC-------c-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-CCCcCHHHH
Confidence 456777788888888888888887532 1 2234455566666665432 4557777777776 555444433
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.73 E-value=32 Score=24.20 Aligned_cols=158 Identities=10% Similarity=-0.041 Sum_probs=87.3
Q ss_pred HhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCC
Q 043380 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGG 88 (246)
Q Consensus 9 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 88 (246)
.+..-.+|..+-...+..+.+.|..+....+.+.+. .+|...-...+.++.+.+.. .+...+.++..
T Consensus 25 ~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~--------- 91 (211)
T 3ltm_A 25 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK--------- 91 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---------
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---------
Confidence 333345666666666777777766433333334343 45666666667777777754 34444444443
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
.++...-...+.++.+.++.+....+.+ +.. .++..+-...+.++...+..+. ...+..+..
T Consensus 92 -~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~----d~~~~vr~~a~~aL~~~~~~~~-----~~~L~~~l~------- 153 (211)
T 3ltm_A 92 -DEDGWVRQSAAVALGQIGDERAVEPLIK-ALK----DEDWFVRIAAAFALGEIGDERA-----VEPLIKALK------- 153 (211)
T ss_dssp -CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT----CSSHHHHHHHHHHHHHHCCGGG-----HHHHHHHTT-------
T ss_pred -CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHh----CCCHHHHHHHHHHHHHcCCHHH-----HHHHHHHHc-------
Confidence 2555566666777777776544433333 333 1566666666777777766443 344444433
Q ss_pred CCcchhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 169 LWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
.++..+-...+.++.+.+..+ +...+..+
T Consensus 154 -d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~ 182 (211)
T 3ltm_A 154 -DEDGWVRQSAADALGEIGGER-VRAAMEKL 182 (211)
T ss_dssp -CSSHHHHHHHHHHHHHHCSHH-HHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCchh-HHHHHHHH
Confidence 245566666677777776633 33333333
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.58 E-value=35 Score=24.56 Aligned_cols=75 Identities=8% Similarity=-0.040 Sum_probs=57.2
Q ss_pred CCCccHHH---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhh
Q 043380 88 GFHPDIFT---YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV 163 (246)
Q Consensus 88 ~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~ 163 (246)
...-|..- |-..+..+ .+++..++.++|..|.. .|+--. +.-|-.....+...|++.+ |.++|+.-.+.
T Consensus 72 rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~----A~~Vy~~GI~~- 144 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLE----AKVLLELGAEN- 144 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHT-
T ss_pred cccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc-
Confidence 34456553 33333333 25557899999999999 888766 6778899999999999999 99999999888
Q ss_pred cCCCCCCcch
Q 043380 164 CSNPGLWPKP 173 (246)
Q Consensus 164 ~~~~~~~p~~ 173 (246)
+-+|-.
T Consensus 145 ----~A~P~~ 150 (202)
T 3esl_A 145 ----NCRPYN 150 (202)
T ss_dssp ----TCBSHH
T ss_pred ----CCccHH
Confidence 677754
No 267
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.09 E-value=39 Score=24.94 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH---hCCCC----CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH
Q 043380 22 AVIEASREAQRIDEAYQILESVE---KGLEP----DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF 94 (246)
Q Consensus 22 ~li~~~~~~g~~~~a~~~~~~~~---~~~~~----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 94 (246)
--++.+....++++|.+++++.+ .+.++ ........++.-.....-.-+..+.+++.. .++..
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----------~~~~~ 92 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----------SNEIV 92 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CSSHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCHH
Confidence 45778899999999999998764 23332 112223334444444444445555555532 34566
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
.-...+..+.+.|+.++|.++|=+...
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 667777888999999999998866544
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.56 E-value=51 Score=26.11 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCC--hhHHHHHHHHHHhhc
Q 043380 174 HLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQ--VDLALDKLSNTITRW 243 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g 243 (246)
.....++.-|...|+.++|.+.++++... ...+.+ ....+..++-+.++ .+.+.+++..+...|
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p---~fhhe~---V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVP---HFHHEL---VYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCT---TCHHHH---HHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCC---cchHHH---HHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 45788999999999999999999999632 122222 45556666665443 356777777776654
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.96 E-value=53 Score=26.04 Aligned_cols=171 Identities=9% Similarity=0.019 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCCHHH
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD--LQSLLEIVFEMKSCCNLILDRST 131 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~ 131 (246)
...+|.-|...++.++|...++++... ...|. ....++......++ -+.+-.++..+.. ++.+....
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p-------~~~~~--~v~~~I~~aLdr~~~erE~~s~LLs~L~~--~~ls~~~i 125 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLG-------EMKSG--VPVLAVSLALEGKASHREMTSKLLSDLCG--TVMSTNDV 125 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCC-------GGGGG--HHHHHHHHHTTSCHHHHHHHHHHHHTTTT--TSCCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCc-------hhHHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHh--CCCCHHHH
Confidence 467788888899999998888887643 22222 22233333222222 2335555555553 44444444
Q ss_pred HHHHHHHHHhcCC----hhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCC--hhHHhhHH---------
Q 043380 132 FTAMVDALLYSGS----IKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVD--YDIVKSPY--------- 196 (246)
Q Consensus 132 ~~~li~~~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~--------- 196 (246)
...+...+....+ ... |..++-.+..+.-....+.|.... ...-..-+..|. .+.|..++
T Consensus 126 ~~gf~~lle~ldDl~lDiP~----a~~~la~flaRaV~d~~l~~~~l~-~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~ 200 (358)
T 3eiq_C 126 EKSFDKLLKDLPELALDTPR----APQLVGQFIARAVGDGILCNTYID-SYKGTVDCVQARAALDKATVLLSMSKGGKRK 200 (358)
T ss_dssp HHHHHHHHHTHHHHHHHCTT----HHHHHHHHHHHHHHTTCSCSSTTG-GGC---CCHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHhhhhhcccccc----HHHHHHHHHHHHHHhCCCCHHHHH-HHhhcccchHHHHHHHHHHHHHhccchHHHH
Confidence 4444444444333 333 455554444431111122222110 000000000000 12222222
Q ss_pred HhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 197 RRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
+...-.+.+..+..--....+.++.-|...|+.++|.+.++++.
T Consensus 201 ~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 201 DSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp --CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHcc
Confidence 22222222222222222256889999999999999999999884
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.37 E-value=37 Score=23.67 Aligned_cols=161 Identities=11% Similarity=0.010 Sum_probs=96.3
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCC
Q 043380 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCS 85 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 85 (246)
..+.+..-.+|..+-...+.++.+.+..+....+.+.+. .++...-...+.++...+..+ +...+..+..
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~------ 86 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK------ 86 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc------
Confidence 344444556777777777777777776544444444444 466666667777777777653 4444444444
Q ss_pred CCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC
Q 043380 86 SGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS 165 (246)
Q Consensus 86 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (246)
.++...-...+.++.+.++.+....+...+.. ++..+-...+.++...++.+. ...+..+...
T Consensus 87 ----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~~~~~~-----~~~L~~~l~d--- 149 (201)
T 3ltj_A 87 ----DEDGWVRQSAAVALGQIGDERAVEPLIKALKD-----EDWFVRIAAAFALGEIGDERA-----VEPLIKALKD--- 149 (201)
T ss_dssp ----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-----SSHHHHHHHHHHHHHHTCGGG-----HHHHHHHTTC---
T ss_pred ----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhCCHHH-----HHHHHHHHcC---
Confidence 25666667777777777776544444443322 566666667777777776543 4444444332
Q ss_pred CCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 166 NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 166 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
++..+-...+.++...|..+ +...+..+
T Consensus 150 -----~~~~vr~~A~~aL~~~~~~~-~~~~L~~~ 177 (201)
T 3ltj_A 150 -----EDGWVRQSAADALGEIGGER-VRAAMEKL 177 (201)
T ss_dssp -----SSHHHHHHHHHHHHHHCSHH-HHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHhCchh-HHHHHHHH
Confidence 56666677777777777644 33333333
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.29 E-value=30 Score=22.73 Aligned_cols=69 Identities=10% Similarity=0.216 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCCHHH
Q 043380 54 YNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD--LQSLLEIVFEMKSCCNLILDRST 131 (246)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~ 131 (246)
.+.++.-|...|+.++|...++++..- .+ ....+...+..++-+.++ .+.+..++..+.. .|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p-------~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~-~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP-------HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-------GG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-------cc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-CCCcCHHHH
Confidence 456777777778888888887777532 12 233455555566655432 3566777777776 555444433
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.48 E-value=26 Score=25.04 Aligned_cols=151 Identities=12% Similarity=0.032 Sum_probs=76.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-hCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHH
Q 043380 23 VIEASREAQRIDEAYQILESVE-KGLEPDS---LSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYAT 98 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~-~~~~~~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 98 (246)
.+...++.|+.+.+..+++.+. .+..++. .-++. +...+..|+.+ +++.+.+.|..+.. ++..-. +
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~----~~~~g~-t 81 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPS----VVRLLVTAGASPMA----LDRHGQ-T 81 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTC----CCTTSC-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHH----HHHHHHHcCCCccc----cCCCCC-C
Confidence 4556678899999888888664 4444432 22333 34445666654 44555555322111 111112 2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh-
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILD---RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH- 174 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~- 174 (246)
.+...+..|+.+-+..+++.-.. .++.++ ....+. +...+..|+.+- +. .+.+. |..++..
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~g~t~-L~~A~~~~~~~~----~~----~Ll~~-----g~~~~~~~ 146 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAP-GTLDLEARNYDGLTA-LHVAVNTECQET----VQ----LLLER-----GADIDAVD 146 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCT-TSCCTTCCCTTSCCH-HHHHHHHTCHHH----HH----HHHHT-----TCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-ccccccccCcCCCcH-HHHHHHcCCHHH----HH----HHHHc-----CCCccccc
Confidence 34444567888777777666432 112221 111222 233344555554 43 34444 3333321
Q ss_pred --hHHHHHHHHHhcCChhHHhhHHHh
Q 043380 175 --LYVSMMHELAARVDYDIVKSPYRR 198 (246)
Q Consensus 175 --~~~~li~~~~~~g~~~~a~~~~~~ 198 (246)
.-.+.+...+..|+.+-+..+++.
T Consensus 147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 147 IKSGRSPLIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 122344555678888887777765
No 273
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=60.02 E-value=0.05 Score=45.14 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 94 FTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
..|..|-.+....++..+|.+-|-+. -|+..|..+|.+..+.|.+++ -.+++...++. .-++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~ed----Lv~yL~MaRk~-------~ke~ 116 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEE----LVKYLQMARKK-------ARES 116 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTT----HHHHHHTTSTT-------CCST
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHH----HHHHHHHHHHH-------hccc
Confidence 37888888888888887776654322 245558888999999999999 77777666554 2233
Q ss_pred hhHHHHHHHHHhcCChhHHh
Q 043380 174 HLYVSMMHELAARVDYDIVK 193 (246)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~ 193 (246)
..=+.|+-+|++.++..+.+
T Consensus 117 ~IDteLi~ayAk~~rL~elE 136 (624)
T 3lvg_A 117 YVETELIFALAKTNRLAELE 136 (624)
T ss_dssp TTTHHHHHHHHTSCSSSTTT
T ss_pred ccHHHHHHHHHhhCcHHHHH
Confidence 44456777777776655433
No 274
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.60 E-value=40 Score=22.93 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHhc
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK--LDVTMPFNEQLKDN 80 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~ 80 (246)
..+.++.-|...|++++|..-++++....-........+..++-+.++ .+.+..++..+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~ 74 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 456789999999999999999999972111122333444444444322 34566777777765
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.44 E-value=92 Score=27.04 Aligned_cols=44 Identities=23% Similarity=0.170 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIK 63 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~ 63 (246)
+| ++|-.|.|+|++++|.++.++....+..-...|...+..|+.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 67 788899999999999999988764333333566677777764
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.18 E-value=49 Score=24.16 Aligned_cols=85 Identities=12% Similarity=-0.000 Sum_probs=47.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh--
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILD---RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH-- 174 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~-- 174 (246)
+...+..|+.+-+..+++. .|..++ ....+.+ ...+..++... ..++++.+.+. |..++..
T Consensus 152 L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~l-~~a~~~~~~~~----~~~i~~~Ll~~-----g~~~~~~~~ 217 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE----MGADVNACDNMGRNAL-IHALLSSDDSD----VEAITHLLLDH-----GADVNVRGE 217 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT----SCCCTTCCCTTSCCHH-HHHHHCSCTTT----HHHHHHHHHHT-----TCCSSCCCT
T ss_pred HHHHHHcCCHHHHHHHHHh----cCCCCCccCCCCCCHH-HHHHHccccch----HHHHHHHHHHc-----CCCCCCcCC
Confidence 3344456666555554443 233332 2222233 33445666666 67778888877 5555432
Q ss_pred hHHHHHHHHHhcCChhHHhhHHHh
Q 043380 175 LYVSMMHELAARVDYDIVKSPYRR 198 (246)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~ 198 (246)
.-.+.+...+..|+.+-+..+++.
T Consensus 218 ~g~t~L~~A~~~~~~~~v~~Ll~~ 241 (285)
T 1wdy_A 218 RGKTPLILAVEKKHLGLVQRLLEQ 241 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhc
Confidence 122345556778898888888873
No 277
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.93 E-value=35 Score=24.99 Aligned_cols=72 Identities=7% Similarity=0.023 Sum_probs=53.4
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
..-|..-...-|..--. .+.+.++|..|.. .|+--. +..|-.....+-..|++.+ |..+|+.-.+.
T Consensus 113 YknD~RyLklWl~Ya~~---~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~----A~~Vy~~Gi~~----- 179 (223)
T 4aez_C 113 YKDDVRYLRIWMQYVNY---IDEPVELFSFLAH-HHIGQESSIFYEEYANYFESRGLFQK----ADEVYQKGKRM----- 179 (223)
T ss_dssp GTTCHHHHHHHHHHHTT---CSCHHHHHHHHHH-TTCSTTBHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----
T ss_pred ccCCHHHHHHHHHHHHc---cCCHHHHHHHHHH-CCcchhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc-----
Confidence 34455543333333222 2466799999999 888776 6778899999999999999 99999998888
Q ss_pred CCCcch
Q 043380 168 GLWPKP 173 (246)
Q Consensus 168 ~~~p~~ 173 (246)
+-+|-.
T Consensus 180 ~A~P~~ 185 (223)
T 4aez_C 180 KAKPFL 185 (223)
T ss_dssp TCBSHH
T ss_pred CCccHH
Confidence 677743
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=54.72 E-value=52 Score=23.29 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=55.2
Q ss_pred HHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCC------------C
Q 043380 139 LLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTG------------T 206 (246)
Q Consensus 139 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------~ 206 (246)
+--.|.+.+ ++-++.... ..++.-|..| +|-+..++..|...++.+...... +
T Consensus 43 LyyngEY~R----~Lf~L~~lN---------T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 43 LYLNGEYTR----ALFHLHKLN---------TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp HHHTTCHHH----HHHHHHTCC---------BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred hhhcchHhH----HHHHHHhcc---------hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 344677777 665543321 1122223332 567788999999999988743322 2
Q ss_pred CCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 207 ISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
+.|.-..+-|+.+...|...|+.++|+..+..-
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 233333446888888999999999999998753
No 279
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.43 E-value=47 Score=22.44 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCC
Q 043380 126 ILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDS 203 (246)
Q Consensus 126 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 203 (246)
.|+..+--.+.-+++++.+... ..+++.+++.+... +-.-...-..-|.-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~d-i~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVND-ERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHH-HHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4555554445556666665443 22377777777665 211123444556667777888888888777776543
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.98 E-value=54 Score=22.98 Aligned_cols=126 Identities=11% Similarity=0.016 Sum_probs=81.3
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
-.+|..+-...+.++.+.+..+....+.+.+. .++...-...+.++.+.++.+ +...+.++.. .++
T Consensus 60 ~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----------d~~ 125 (211)
T 3ltm_A 60 KDEDAWVRRAAADALGQIGDERAVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK----------DED 125 (211)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----------CSS
T ss_pred cCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh----------CCC
Confidence 45677777777778888777544433444443 577777788888888888754 4555555554 366
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
...-...+.++.+.++.+. ...+..+.. . ++..+-...+.++...+.. . +...+..+.+.
T Consensus 126 ~~vr~~a~~aL~~~~~~~~-~~~L~~~l~-d---~~~~vr~~a~~aL~~~~~~-~----~~~~L~~~l~d 185 (211)
T 3ltm_A 126 WFVRIAAAFALGEIGDERA-VEPLIKALK-D---EDGWVRQSAADALGEIGGE-R----VRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGG-HHHHHHHTT-C---SSHHHHHHHHHHHHHHCSH-H----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHc-C---CCHHHHHHHHHHHHHhCch-h----HHHHHHHHHhC
Confidence 6676777888887777554 344444444 1 5666667777788877763 4 56666666654
No 281
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=53.76 E-value=27 Score=29.60 Aligned_cols=62 Identities=8% Similarity=-0.039 Sum_probs=25.8
Q ss_pred HHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchH
Q 043380 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVT 70 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a 70 (246)
...+-.--+..--.-++..|++.|-.+.|.++++.+-....-+...| ..|..|+++|+++.+
T Consensus 507 lLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 507 LLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred HhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 33333444455566778888888888888888887764334444455 556677777777654
No 282
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=52.62 E-value=65 Score=23.51 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCCCHHH---H-----HHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 33 IDEAYQILESVEKGLEPDSLS---Y-----NILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~t---~-----~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
++.|+.+|+.++.....+... . -..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 688999999997433322221 1 13455678899999999999999875
No 283
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=51.87 E-value=41 Score=21.01 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 043380 110 QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGS 144 (246)
Q Consensus 110 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 144 (246)
-.|.++.++... .|+.|+..+..-++..|...+-
T Consensus 26 Vsae~L~eEfde-fGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 26 ASAQQLAEELQI-FGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CCHHHHHHHHHH-HTCBCCHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCC
Confidence 346788888888 9999999888888888887764
No 284
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=51.29 E-value=1.5e+02 Score=27.17 Aligned_cols=154 Identities=6% Similarity=-0.070 Sum_probs=78.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHH--HHHHHHHcc
Q 043380 29 EAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYA--TLLMGFRHA 106 (246)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~ 106 (246)
-.|+.+....++..+.....-+..-+..+--++...|+.+.+..+.+.+... ..|....-. ++.-+|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--------~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--------DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTS
T ss_pred ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHhcCC
Confidence 3455555566665554321111122222222333567777777777777653 233333222 333456677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhc
Q 043380 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAAR 186 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~ 186 (246)
|+.....+++..+.+ . ...+......+.-++...|+.+. +.++++.+.+. ..|...--..+.-+....
T Consensus 574 Gn~~aIq~LL~~~~~-d-~~d~VRraAViaLGlI~~g~~e~----v~rlv~~L~~~------~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 574 GNNSAVKRLLHVAVS-D-SNDDVRRAAVIALGFVLLRDYTT----VPRIVQLLSKS------HNAHVRCGTAFALGIACA 641 (963)
T ss_dssp CCHHHHHHHHHHHHH-C-SCHHHHHHHHHHHHHHTSSSCSS----HHHHTTTGGGC------SCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcc-C-CcHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhc------CCHHHHHHHHHHHHHhcc
Confidence 777777777777766 2 11223333334445555666666 77777665543 234444444444444444
Q ss_pred CCh-hHHhhHHHhhCCC
Q 043380 187 VDY-DIVKSPYRRMWPD 202 (246)
Q Consensus 187 g~~-~~a~~~~~~~~~~ 202 (246)
|+. .++..++..+..+
T Consensus 642 Gn~~~~aid~L~~L~~D 658 (963)
T 4ady_A 642 GKGLQSAIDVLDPLTKD 658 (963)
T ss_dssp SSCCHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHccC
Confidence 443 3566666666543
No 285
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.40 E-value=76 Score=24.76 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCc
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISP 209 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 209 (246)
......++..+.+....+.+..+|..-.-+-..+.|+
T Consensus 141 ~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~l~~f~P~ 177 (339)
T 1ug3_A 141 ASLLLEILGLLCKSMGPKKVGTLWREAGLSWKEFLPE 177 (339)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHTTCCGGGTSCT
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHcCCCHHHhCCC
Confidence 3456667777777778888888888654433334443
No 286
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=49.98 E-value=57 Score=22.11 Aligned_cols=134 Identities=10% Similarity=0.055 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCC
Q 043380 91 PDIFTYATLLMGFRHA-KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGL 169 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 169 (246)
.+..-+..++..+... ...+.+..+|..+-....-..+..-|..++.........+. ...+|+.+-.. . .-
T Consensus 36 i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~----~~~~f~~~D~d---~-~G 107 (183)
T 1s6c_A 36 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEK----LRWTFNLYDIN---K-DG 107 (183)
T ss_dssp ECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHH----HHHHHHHHCTT---C-SS
T ss_pred CCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHH----HHHHHHHhCCC---C-CC
Confidence 4445555555555433 34556677777775522233444445555554444444445 66666655332 1 11
Q ss_pred CcchhhHHHHHHHHH-hcCC-----------hhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHH
Q 043380 170 WPKPHLYVSMMHELA-ARVD-----------YDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLS 237 (246)
Q Consensus 170 ~p~~~~~~~li~~~~-~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 237 (246)
..+..-+..++.... ..|. .+.+..+|..+..++.|.+ +|.-++..+.+...+-++...|+
T Consensus 108 ~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i-------~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 108 YINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV-------TLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp CEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEE-------CHHHHHHHTTSCCHHHHHHHHHH
T ss_pred eEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcE-------eHHHHHHHHhcChHHHHHHHHhh
Confidence 233333333333321 1132 2678888998876665654 46677877777777777777776
Q ss_pred HH
Q 043380 238 NT 239 (246)
Q Consensus 238 ~m 239 (246)
.+
T Consensus 181 ~~ 182 (183)
T 1s6c_A 181 NV 182 (183)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 287
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=49.61 E-value=74 Score=23.30 Aligned_cols=135 Identities=11% Similarity=0.048 Sum_probs=75.3
Q ss_pred CccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCC
Q 043380 90 HPDIFTYATLLMGFRHA-KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPG 168 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 168 (246)
..+..-+..++..+... .....+..+|..+.....-..+..-|..++..+......+. ...+|+.+-.. . .
T Consensus 108 ~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~----l~~~F~~~D~d---~-d 179 (256)
T 2jul_A 108 LVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEK----LKWAFNLYDIN---K-D 179 (256)
T ss_dssp SEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHH----HHHHHHHTCCS---S-S
T ss_pred cCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHH----HHHHHHHhCCC---C-C
Confidence 34555666666665432 23455677777775522223343344444444443333344 55566544221 1 1
Q ss_pred CCcchhhHHHHHHHHHh-cC-----------ChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 169 LWPKPHLYVSMMHELAA-RV-----------DYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 169 ~~p~~~~~~~li~~~~~-~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
-..+..-+..++..+.. .| .-+.+..+|..+..++.|.+ +|.-++..+.+...+-++...|
T Consensus 180 G~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I-------s~~Ef~~~~~~~~~l~~~l~~~ 252 (256)
T 2jul_A 180 GCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVV-------TIDEFLETCQKDENIMNSMQLF 252 (256)
T ss_dssp SCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCSTTCSB-------CHHHHHHHHHHCSSHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCCCCcE-------eHHHHHHHHHhCHHHHHHHHhh
Confidence 12333334444433321 13 34678889999877766665 4677888888888888888888
Q ss_pred HHH
Q 043380 237 SNT 239 (246)
Q Consensus 237 ~~m 239 (246)
+.+
T Consensus 253 d~~ 255 (256)
T 2jul_A 253 ENV 255 (256)
T ss_dssp HHH
T ss_pred ccc
Confidence 765
No 288
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=48.58 E-value=60 Score=21.93 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=49.9
Q ss_pred CccHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 90 HPDIFTYATLLMGFRHAKDL---QSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 90 ~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
.|+..+--.+..++.+..+. .++..+++.+.+ .+-.-.......|.-++.+.|++++ |.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~----Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSM----AKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHH----HHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHH----HHHHHHHHHhc
Confidence 56766666666677776654 568888888887 3221123445567889999999999 99999999985
No 289
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=48.09 E-value=54 Score=21.58 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=42.9
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcc
Q 043380 6 EIVNREHWKLNTIVMNAVIEASREAQ-RIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~ 68 (246)
+.+++.|.+++..-. .++..+...+ ..-.|.++++.++ ++...+..|..--|+.+...|-..
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 346677888887654 5666666666 6778999999987 444556777666677777776543
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.46 E-value=57 Score=21.37 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHhc
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKK--LDVTMPFNEQLKDN 80 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~ 80 (246)
..+.++.-|...|+.++|..-++++....-........+..++-+.+. .+.+..++..+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~ 72 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 356789999999999999999999972111122333444444444322 35577777777765
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.33 E-value=53 Score=24.07 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHH
Q 043380 153 LCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLA 232 (246)
Q Consensus 153 ~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 232 (246)
..++++........+..+-|.. |-.+.--|+.. .+.+..+|..|...+.|..... -|......+-..|++++|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~R-yLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~Al----fYe~wA~~lE~~g~~~~A 169 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVR-YLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSI----FYEEYANYFESRGLFQKA 169 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHH-HHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHH----HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcccccccCCHH-HHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHH----HHHHHHHHHHHcCCHHHH
Confidence 4455554444222223344443 33333344442 3577889999988887754433 588888889999999999
Q ss_pred HHHHHHHHhhc
Q 043380 233 LDKLSNTITRW 243 (246)
Q Consensus 233 ~~~~~~m~~~g 243 (246)
.++|+.=++++
T Consensus 170 ~~Vy~~Gi~~~ 180 (223)
T 4aez_C 170 DEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 99998765543
No 292
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.65 E-value=1.1e+02 Score=24.43 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=58.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-----------------CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCC
Q 043380 24 IEASREAQRIDEAYQILESVEKGL-----------------EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSS 86 (246)
Q Consensus 24 i~~~~~~g~~~~a~~~~~~~~~~~-----------------~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 86 (246)
+.++....+.++|.+.++.+...+ .+-......+...|...++.++|..++++....=.. .
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~--~ 160 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDK--K 160 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--S
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--c
Confidence 445556788999999998764211 222344566777788899999999999888642000 0
Q ss_pred CCCCcc--HHHHHHHHHHHHccCCHHHHHHH
Q 043380 87 GGFHPD--IFTYATLLMGFRHAKDLQSLLEI 115 (246)
Q Consensus 87 ~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~ 115 (246)
.++.|. ...|......|.+.+++..+...
T Consensus 161 ~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~ 191 (393)
T 4b4t_O 161 DSIPLRITNSFYSTNSQYFKFKNDFNSFYYT 191 (393)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 134443 34566777777888888765544
No 293
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.46 E-value=59 Score=21.22 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCH
Q 043380 56 ILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109 (246)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 109 (246)
.++..+...+..-.|.++++.+.+. +...+..|...-|+.+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~-------~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRR-------GENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHT-------TCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-------CCCCCHhhHHHHHHHHHHCCCE
Confidence 4566666677788999999999887 5566777777777888777754
No 294
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=46.18 E-value=46 Score=19.96 Aligned_cols=72 Identities=8% Similarity=-0.062 Sum_probs=38.7
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
++.++..-...+..........++..++|..+..++.|.+...- +..++..+...-..+++.++++.+-..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~E----l~~~l~~~g~~~~~~e~~~l~~~~D~d~ 78 (94)
T 2kz2_A 7 HHHGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAE----LRHVMTNLGEKLTDEEVDEMIREADIDG 78 (94)
T ss_dssp CSCCSSCCTHHHHHHHCCCSCHHHHHHHHHHHCTTCCSCBCHHH----HHHHHHHHTCCCCHHHHHHHHHHHCTTC
T ss_pred cccCcccHHHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcCCHHH----HHHHHHHhCCCCCHHHHHHHHHHhCCCC
Confidence 33444433344444444455667788888888777767666442 3333333332234456667776664333
No 295
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.02 E-value=81 Score=22.69 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=42.7
Q ss_pred cCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 186 RVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 186 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
.++...+..+|..|...+.|..... -|......+-..|++++|.++|+.=++++
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~Al----fYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSL----FYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3447799999999988887754433 58888889999999999999998766544
No 296
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.72 E-value=74 Score=24.54 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=48.7
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPD---SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
..|..-++. +...+..|+.+.+..+++. |..++ ..-++.| ...+..|+.+-+ +.+.+.| ..
T Consensus 15 ~~d~~g~t~-L~~Aa~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L-~~A~~~g~~~~v----~~Ll~~g-------~~ 78 (364)
T 3ljn_A 15 KSDDENMEK-IHVAARKGQTDEVRRLIET---GVSPTIQNRFGCTAL-HLACKFGCVDTA----KYLASVG-------EV 78 (364)
T ss_dssp -CCHHHHHH-HHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHH-HHHHHHCCHHHH----HHHHHHC-------CC
T ss_pred ccCCCCCCH-HHHHHHcCCHHHHHHHHHc---CCCccccCCCCCcHH-HHHHHcCCHHHH----HHHHHCC-------CC
Confidence 345554544 4555678998887777754 33333 2223344 344556766444 4444442 22
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
++...-.+.+...+..|+.+-+..+++.-..
T Consensus 79 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 79 HSLWHGQKPIHLAVMANKTDLVVALVEGAKE 109 (364)
T ss_dssp CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHhccc
Confidence 2221112334445567888888888777544
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.66 E-value=69 Score=21.83 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=54.1
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 89 FHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 89 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
..-|..-...-|.---...+ +.++|..|.. .|+--. +.-|-.....+-..|++.+ |.++|+.-.+.
T Consensus 64 YknD~RyLklWl~ya~~~~d---p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~----A~~Vy~~Gi~~----- 130 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNSD---LHQFFEFLYN-HGIGTLSSPLYIAWAGHLEAQGELQH----ASAVLQRGIQN----- 130 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBSC---HHHHHHHHHT-TTTTTTBHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHT-----
T ss_pred ccCCHHHHHHHHHHHHhcCC---HHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc-----
Confidence 45566544444443333333 7999999999 888766 6778899999999999999 99999998887
Q ss_pred CCCcch
Q 043380 168 GLWPKP 173 (246)
Q Consensus 168 ~~~p~~ 173 (246)
+-+|-.
T Consensus 131 ~A~P~~ 136 (152)
T 4a1g_A 131 QAEPRE 136 (152)
T ss_dssp TCBSHH
T ss_pred CCccHH
Confidence 677744
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.07 E-value=1.4e+02 Score=25.10 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=47.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hCCCCCH--HHHH-HHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 14 KLNTIVMNAVIEASREAQRIDEAYQILESVE--KGLEPDS--LSYN-ILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~--~t~~-~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
..-...+|.++..|...+.++.|..+..... ....+|. .+|. .+...+.-.+++.+|.+.+......
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3446789999999999999999999999875 1111221 2232 2345556688999999999887764
No 299
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=44.69 E-value=25 Score=24.91 Aligned_cols=177 Identities=12% Similarity=0.054 Sum_probs=81.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC----ccHHHHH
Q 043380 23 VIEASREAQRIDEAYQILESVEKGL-EPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH----PDIFTYA 97 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----p~~~~~~ 97 (246)
.+...++.|+.+.+..+++.-.... ..|..-++.+..+ +..|+.+- ++.+.+.|. ... ++..-++
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~----v~~Ll~~~~-----~~~~~~~~~~~g~t 74 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHEI----TSFLLSKME-----NVNLDDYPDDSGWT 74 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH-HHTTCHHH----HHHHHHTCT-----TCCGGGCCCTTSCC
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH-HHcCCHHH----HHHHHhccc-----cccccccCCCCCCC
Confidence 3556678899888888887643211 2343334444443 55666544 444444420 011 1222223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC--CCCC---HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 98 TLLMGFRHAKDLQSLLEIVFEMKSCCN--LILD---RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~---~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
.| ...+..|+.+-+.. +.+ .| ..++ ..-.+. +...+..|+.+- +.. +.+. |..++
T Consensus 75 ~L-~~A~~~~~~~~~~~----Ll~-~g~~~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~----Ll~~-----g~~~~ 134 (228)
T 2dzn_A 75 PF-HIACSVGNLEVVKS----LYD-RPLKPDLNKITNQGVTC-LHLAVGKKWFEV----SQF----LIEN-----GASVR 134 (228)
T ss_dssp HH-HHHHHHCCHHHHHH----HHS-SSSCCCTTCCCTTCCCH-HHHHHHTTCHHH----HHH----HHHT-----TCCSC
T ss_pred HH-HHHHHcCCHHHHHH----HHh-CCCCcccccCCcCCCCH-HHHHHHcCCHhH----HHH----HHHc-----CCCcc
Confidence 33 33345566654444 444 33 2111 112222 333445566555 443 3343 33333
Q ss_pred hh--hHHHHHHHHHhcCChhHHhhHHHhh-CCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHH
Q 043380 173 PH--LYVSMMHELAARVDYDIVKSPYRRM-WPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKL 236 (246)
Q Consensus 173 ~~--~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 236 (246)
.. .-.+.+...+..|+.+-+..+++.- ...+ .... .-.+.+...+..|+.+-+..++
T Consensus 135 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~d~----~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN---WQDK----QGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC---CCCT----TSCCHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc---CcCC----CCCCHHHHHHHcCCHHHHHHHH
Confidence 21 1122345556778887777776654 1111 0100 0112334445677776666555
No 300
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.02 E-value=49 Score=21.46 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=31.3
Q ss_pred HHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 73 FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 73 ~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
+|+.+... .+.|+...--.-|..+...+|++.|.+++-.+..
T Consensus 48 LfdkLn~~-------~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGG-------KLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHT-------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666665 6777766555556666788999999999988877
No 301
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.91 E-value=49 Score=21.94 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCH
Q 043380 55 NILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109 (246)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 109 (246)
..++..+...+..-.|.++++.+.+. +...+..|...-|+.+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~-------~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHK-------GDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHT-------TCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHh-------CCCCCHHHHHHHHHHHHHCCCE
Confidence 45666666777788899999999887 5667777777777888777754
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.79 E-value=58 Score=21.93 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=45.6
Q ss_pred hHHHHhcccCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcch
Q 043380 5 NEIVNREHWKLNTIVMNAVIEASREAQ-RIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLDV 69 (246)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~~ 69 (246)
.+.+++.|++++..-. .++..+...+ ..-.|.++++.++ ++...+..|.---|+.+...|-+..
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3457778888888755 5666666666 6778999999997 4445577777767788887775543
No 303
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.61 E-value=46 Score=23.55 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 23 VIEASREAQRIDEAYQILESVEK-GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
.+...++.|+++....+++.-.. -..++...++.|..+ +..|+.+ +++.+.+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~ 62 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQL 62 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHT
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHh
Confidence 35666778888888888876431 112333333444333 4555544 33444444
No 304
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.36 E-value=66 Score=20.95 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=37.9
Q ss_pred HHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 134 AMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 134 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
.++..+...+..-. |.++++.+.+. +-..+..|..-.+..+...|-+.+
T Consensus 15 ~Il~~l~~~~~~~s----a~ei~~~l~~~-----~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRS----AQELHDELRRR-----GENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEE----HHHHHHHHHHT-----TCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHh-----CCCCCHhhHHHHHHHHHHCCCEEE
Confidence 35566666777778 99999999887 556677888888899998886543
No 305
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.49 E-value=57 Score=21.62 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 123 CNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 123 ~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
.|++++..= ..++..+...+..-. |.++++.+.+. +-..+..|..--+..+...|-+.+
T Consensus 8 ~g~r~T~qR-~~Il~~L~~~~~h~s----a~eI~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 8 VKGRATRQR-AAVSAALQEVEEFRS----AQELHDMLKHK-----GDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp --CHHHHHH-HHHHHHHTTCSSCEE----HHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCccCHHH-HHHHHHHHhCCCCCC----HHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 455444322 345666667777788 99999999887 556778888888899999987654
No 306
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=41.44 E-value=68 Score=20.52 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=10.3
Q ss_pred hHHhhHHHhhCCCCCCCCCc
Q 043380 190 DIVKSPYRRMWPDSTGTISP 209 (246)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~ 209 (246)
+....+|..+-.++.|.+..
T Consensus 84 ~~~~~~F~~~D~d~~G~i~~ 103 (147)
T 4ds7_A 84 QELLEAFKVFDKNGDGLISA 103 (147)
T ss_dssp HHHHHHHHHHCTTCSSEECH
T ss_pred HHHHHHHHHhCCCCCCeECH
Confidence 34455566665555455443
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.33 E-value=75 Score=22.99 Aligned_cols=124 Identities=9% Similarity=-0.064 Sum_probs=65.8
Q ss_pred HHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHH--ccCCHHHHHHHHHHHHhCCC---------CC-
Q 043380 59 SACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFR--HAKDLQSLLEIVFEMKSCCN---------LI- 126 (246)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~---------~~- 126 (246)
...++.|+.+....+++.+.+.|..+.......+..-.+.|..+.. +.|+.+-+..+++.-.. .+ +.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK-TGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH-TTCHHHHHTCCBCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc-ccchHhhhcccccc
Confidence 3446778899888888888777433222221111223345555442 56888777777776433 11 10
Q ss_pred CCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh----------------HHHHHHHHHhcCChh
Q 043380 127 LDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL----------------YVSMMHELAARVDYD 190 (246)
Q Consensus 127 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~----------------~~~li~~~~~~g~~~ 190 (246)
.|..-.+. +...+..|+.+- +..++ +. |..++... -.+.+...+..|+.+
T Consensus 89 ~d~~g~t~-L~~A~~~g~~~~----v~~Ll----~~-----ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 154 (260)
T 3jxi_A 89 VYYRGQTA-LHIAIERRCKHY----VELLV----EK-----GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154 (260)
T ss_dssp SSEESBCH-HHHHHHTTCHHH----HHHHH----HT-----TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred cccCCCCH-HHHHHHcCCHHH----HHHHH----hC-----CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence 01111222 333445677666 54444 34 33333321 223445557788988
Q ss_pred HHhhHHH
Q 043380 191 IVKSPYR 197 (246)
Q Consensus 191 ~a~~~~~ 197 (246)
-+..+++
T Consensus 155 ~v~~Ll~ 161 (260)
T 3jxi_A 155 IVHYLTE 161 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888887
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.64 E-value=79 Score=21.07 Aligned_cols=63 Identities=11% Similarity=-0.048 Sum_probs=43.9
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 117 FEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 117 ~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
+.+++ .|++++..=-. ++..+...+ .-. |.++++.+.+. +...+..|..--+..+...|-+.+
T Consensus 8 ~~L~~-~g~r~T~qR~~-Il~~l~~~~-h~t----a~ei~~~l~~~-----~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 8 SDLRQ-RGYRLTPQRQL-VLEAVDTLE-HAT----PDDILGEVRKT-----ASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHT-TTCCCCHHHHH-HHHHHHHHS-SBC----HHHHHHHHHTT-----CTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHH-cCCCcCHHHHH-HHHHHHhcC-CCC----HHHHHHHHHhh-----CCCCCHhHHHHHHHHHHHCCcEEE
Confidence 34555 88888864332 344444555 667 99999999887 556677888888888888886543
No 309
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=40.36 E-value=75 Score=20.73 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=23.8
Q ss_pred ChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 188 DYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
..+....+|..+-.++.|.+...- +..++..+...-..+++..+++.+-
T Consensus 89 ~~~~~~~~F~~~D~d~~G~I~~~e----l~~~l~~~g~~~~~~~~~~~~~~~D 137 (158)
T 2jnf_A 89 MQQELREAFRLYDKEGNGYISTDV----MREILAELDETLSSEDLDAMIDEID 137 (158)
T ss_dssp TSSTHHHHHHHHCSSSSSSEEHHH----HHHHHHHHCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHH----HHHHHHHhCCcCCHHHHHHHHHHhC
Confidence 344566677777666656554332 2223332221123455666666553
No 310
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=40.21 E-value=72 Score=20.45 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=12.9
Q ss_pred hhHHhhHHHhhCCCCCCCCCch
Q 043380 189 YDIVKSPYRRMWPDSTGTISPE 210 (246)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~~~ 210 (246)
.+....+|..+-.++.|.+...
T Consensus 84 ~~~~~~~F~~~D~d~~G~i~~~ 105 (149)
T 2mys_C 84 FEDFVEGLRVFDKEGNGTVMGA 105 (149)
T ss_pred HHHHHHHHHHhCCCCCceEcHH
Confidence 3556666776666655655543
No 311
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=39.76 E-value=1.3e+02 Score=23.28 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 043380 108 DLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143 (246)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 143 (246)
++++++++|-+.-. +..+......+...++..|
T Consensus 184 dv~~~Ld~Yf~qCS---i~vt~~dLA~~~a~LAn~G 216 (310)
T 1u60_A 184 DAMEACDVYTRQCS---TLLNTIELATLGATLAAGG 216 (310)
T ss_dssp CHHHHHHHHHHHTT---EEECHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhc---ccccHHHHHHHHHHHhCCC
Confidence 55555555555444 4445444544444444444
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.67 E-value=82 Score=20.98 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=43.2
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCcc
Q 043380 6 EIVNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-KGLEPDSLSYNILISACIKTKKLD 68 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~t~~~li~~~~~~~~~~ 68 (246)
+.+++.|.+++..-- .++..+...+ .-.|.++++.++ ++...+..|.---|+.+...|-..
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 456677888888654 5566666666 678999999997 444557777666677777777543
No 313
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.46 E-value=58 Score=25.46 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=54.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPH 174 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~ 174 (246)
....++.-|...||.++|...++++.. .... ...+...+..++-+ ++-+ ...+..++..+.+. ++-+...
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~-p~~~-~~~v~~~i~~~le~-~~~~--re~~~~Ll~~L~~~-----~~is~~~ 82 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELAS-PSLL-FIFVRHGVESTLER-SAIA--REHMGQLLHQLLCA-----GHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC-GGGH-HHHHHHHHHHHTTT-CHHH--HHHHHHHHHHHHHT-----TSSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-cccH-HHHHHHHHHHHhCC-CHHH--HHHHHHHHHHHHHC-----CCCCHHH
Confidence 356788889999999999999998865 2221 12333333333333 2211 23377888888776 5544443
Q ss_pred hHHHHHHHHHhcC----ChhHHhhHHHhhC
Q 043380 175 LYVSMMHELAARV----DYDIVKSPYRRMW 200 (246)
Q Consensus 175 ~~~~li~~~~~~g----~~~~a~~~~~~~~ 200 (246)
....+-..+.... |+..|...+..+.
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v 112 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELV 112 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHH
Confidence 3333333333322 4456666666554
No 314
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.28 E-value=1.3e+02 Score=24.04 Aligned_cols=96 Identities=6% Similarity=-0.066 Sum_probs=58.8
Q ss_pred HHHHHHhcCChhhhhhHHHHHHHHHHHh----hcCC-------CCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCC--
Q 043380 135 MVDALLYSGSIKVVGLYALCIFGEIVKR----VCSN-------PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWP-- 201 (246)
Q Consensus 135 li~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-- 201 (246)
++.......+.++ +.+.++.+... +... ....+-......+...|...|+.+.|..++++...
T Consensus 82 ~~~~~~~~~d~~~----al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l 157 (393)
T 4b4t_O 82 LLASLKDSKDFDE----SLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTL 157 (393)
T ss_dssp THHHHHHTTCHHH----HHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHH----HHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4555666777888 88888776432 0000 01122334556677888899999999999988762
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhcCChhHHHH
Q 043380 202 DSTGTISPEVQEEAGHLLMEAALNDGQVDLALD 234 (246)
Q Consensus 202 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 234 (246)
...+.+.+.+....|......|...+++..+..
T Consensus 158 ~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 158 DKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp HHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccCCccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 112335555554456666666777777665443
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.20 E-value=84 Score=20.91 Aligned_cols=64 Identities=8% Similarity=-0.064 Sum_probs=46.3
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 117 FEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 117 ~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
+.+++ .|++++..=.. ++..+...+..-. |.++++.+.+. +...+..|..--+..+...|-+.+
T Consensus 11 ~~l~~-~g~r~T~qR~~-Il~~L~~~~~~~s----a~ei~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKE-TGVRITPQRHA-ILEYLVNSMAHPT----ADDIYKALEGK-----FPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHH-TTCCCCHHHHH-HHHHHHHCSSCCC----HHHHHHHHGGG-----CTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHH-cCCCCCHHHHH-HHHHHHhCCCCCC----HHHHHHHHHHh-----CCCCChhhHHHHHHHHHHCCCEEE
Confidence 44666 88888865433 4555555677778 99999999887 556677888888888888886643
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.93 E-value=94 Score=21.41 Aligned_cols=62 Identities=5% Similarity=-0.107 Sum_probs=46.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHH------HHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 95 TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLIL--DRSTFTAMVD------ALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~------~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+|..-+..|-. |++-+|.++++..=. ..-.+ ....|..||. ...+.|+... |..++.+....
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~-~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~G----A~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWY-NYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDG----MRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTT-TTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHH
Confidence 45555555655 999999999999877 44445 4566777777 3455899999 99999998764
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.65 E-value=88 Score=20.99 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=45.9
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 116 VFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 116 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
-+.+++ .|++++..=. .++..+...+..-. |.++++.+.+. +...+..|..-.+..+...|-+.+
T Consensus 15 ~~~l~~-~g~r~T~qR~-~IL~~l~~~~~~~s----a~ei~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 15 RMSIKK-NGLKNSKQRE-EVVSVLYRSGTHLS----PEEITHSIRQK-----DKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHH-CC--CHHHHH-HHHHHHHHCSSCBC----HHHHHHHHHHH-----STTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHH-cCCCCCHHHH-HHHHHHHhCCCCCC----HHHHHHHHHHh-----CCCCCHhhHHHHHHHHHHCCcEEE
Confidence 344666 8887775433 35555666677788 99999999987 556677888888889999887643
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.64 E-value=91 Score=22.03 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=16.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
|...++.|+.+.+..+++.+.+ .|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQ-GGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-TTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCCCC
Confidence 3444566777777777776655 444433
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.60 E-value=67 Score=19.77 Aligned_cols=40 Identities=18% Similarity=0.016 Sum_probs=30.9
Q ss_pred CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHH
Q 043380 187 VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDK 235 (246)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 235 (246)
.+.++|.++++.+...++. +|..++.++...|+..-|..+
T Consensus 51 t~~~~ar~Lld~L~~rG~~---------Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQ---------ALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTT---------HHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChH---------HHHHHHHHHHHcCcHHHHHHH
Confidence 5789999999999876421 799999999877876655443
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.55 E-value=86 Score=20.86 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=42.1
Q ss_pred HHH-hCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCH
Q 043380 42 SVE-KGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDL 109 (246)
Q Consensus 42 ~~~-~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 109 (246)
.++ +|.+++.. --.++..+...+..-.|.++++.+.+. +...+..|...-|+.+...|-.
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~-------~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGK-------FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGG-------CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHh-------CCCCChhhHHHHHHHHHHCCCE
Confidence 344 56666644 344566666677788899999999887 5566777777777777777754
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.53 E-value=82 Score=20.64 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=45.0
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcC-ChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 118 EMKSCCNLILDRSTFTAMVDALLYSG-SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 118 ~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
.+++ .|++++..=.. ++..+...+ ..-. |.++++.+.+. +...+..|..--+..+...|-+.+
T Consensus 8 ~l~~-~g~r~T~qR~~-Il~~L~~~~~~~~s----a~ei~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRK-AGLKVTLPRVK-ILQMLDSAEQRHMS----AEDVYKALMEA-----GEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHH-TTCCCCHHHHH-HHHHHHCC-CCSBC----HHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHH-CCCCCCHHHHH-HHHHHHhCCCCCCC----HHHHHHHHHhh-----CCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4566 88888765443 455555555 6777 99999999887 556677888888888888887653
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.28 E-value=89 Score=20.96 Aligned_cols=64 Identities=8% Similarity=0.035 Sum_probs=46.3
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcC-ChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhH
Q 043380 117 FEMKSCCNLILDRSTFTAMVDALLYSG-SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDI 191 (246)
Q Consensus 117 ~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 191 (246)
+.+++ .|++++..=.. ++..+...+ ..-. |.++++.+.+. +...+..|..--+..+...|-+.+
T Consensus 6 ~~l~~-~g~r~T~qR~~-Il~~L~~~~~~h~s----a~ei~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 6 QALKD-AGLKVTLPRLK-ILEVLQQPECQHIS----AEELYKKLIDL-----GEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHH-TTCCCCHHHHH-HHHHHTSGGGSSEE----HHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHH-cCCCCCHHHHH-HHHHHHhCCCCCCC----HHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHCCcEEE
Confidence 44666 88888865443 445555555 6777 99999999887 556677888888888888887653
No 323
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.70 E-value=29 Score=26.05 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=4.9
Q ss_pred HHHhcCChhh
Q 043380 138 ALLYSGSIKV 147 (246)
Q Consensus 138 ~~~~~~~~~~ 147 (246)
..+..|+.+-
T Consensus 167 ~A~~~g~~~~ 176 (285)
T 3kea_A 167 ITIKNGHVDM 176 (285)
T ss_dssp HHHHTTCHHH
T ss_pred HHHHcChHHH
Confidence 3344555555
No 324
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.21 E-value=1e+02 Score=21.28 Aligned_cols=142 Identities=11% Similarity=0.004 Sum_probs=88.2
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 13 WKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 13 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
-.++..+-...+.++++.|..+....+.+.+. .++...-...+.++.+.++.+ +...+..+.. .++
T Consensus 55 ~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----------d~~ 120 (201)
T 3ltj_A 55 KDEDAWVRRAAADALGQIGDERAVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK----------DED 120 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----------CSS
T ss_pred cCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc----------CCC
Confidence 45677666777777777777544444444443 577778888888888888754 4454555554 356
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcc
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPK 172 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~ 172 (246)
...-...+.++.+.++.+. ...+..+.. . ++..+-...+.++...|.. . +...+..+.+. ++
T Consensus 121 ~~vr~~a~~aL~~~~~~~~-~~~L~~~l~-d---~~~~vr~~A~~aL~~~~~~-~----~~~~L~~~l~d--------~~ 182 (201)
T 3ltj_A 121 WFVRIAAAFALGEIGDERA-VEPLIKALK-D---EDGWVRQSAADALGEIGGE-R----VRAAMEKLAET--------GT 182 (201)
T ss_dssp HHHHHHHHHHHHHHTCGGG-HHHHHHHTT-C---SSHHHHHHHHHHHHHHCSH-H----HHHHHHHHHHH--------CC
T ss_pred HHHHHHHHHHHHHhCCHHH-HHHHHHHHc-C---CCHHHHHHHHHHHHHhCch-h----HHHHHHHHHhC--------CC
Confidence 6666677778877777543 444444444 2 5666777777888887764 4 56666666654 34
Q ss_pred hhhHHHHHHHHHhc
Q 043380 173 PHLYVSMMHELAAR 186 (246)
Q Consensus 173 ~~~~~~li~~~~~~ 186 (246)
...-...+.++.+.
T Consensus 183 ~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 183 GFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 325
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=37.13 E-value=2e+02 Score=24.70 Aligned_cols=208 Identities=12% Similarity=-0.010 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHH--HHHHHHHhccCC---------C
Q 043380 16 NTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTM--PFNEQLKDNGQK---------C 84 (246)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~--~~~~~m~~~~~~---------~ 84 (246)
+...--....+....|+.++|......+...-......+..++..+.+.|.+.... .=++.+...|.. +
T Consensus 101 ~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l 180 (618)
T 1qsa_A 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM 180 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444455667777888888888777776333455567777777777666443321 111111111100 0
Q ss_pred C---------------C--------CCCCccHH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHH--HHHHHH
Q 043380 85 S---------------S--------GGFHPDIF---TYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS--TFTAMV 136 (246)
Q Consensus 85 ~---------------~--------~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~li 136 (246)
. + ..+.|+.. .+...+.-+.+ .+.+.|...|........+.+... ....+.
T Consensus 181 ~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia 259 (618)
T 1qsa_A 181 PADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVA 259 (618)
T ss_dssp CGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHH
Confidence 0 0 00011111 11112223333 377888888888865233322221 222333
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHH
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAG 216 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 216 (246)
......+...+ +...+...... .++.....-.+....+.|+++.|...|..|..... ..+. ..
T Consensus 260 ~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~--~~~r----~~ 322 (618)
T 1qsa_A 260 WRLMGNDVTDE----QAKWRDDAIMR-------SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK--EKDE----WR 322 (618)
T ss_dssp HTSCSTTCCHH----HHHHHHHHHHT-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG--GSHH----HH
T ss_pred HHHHHcCCChH----HHHHHHhcccc-------CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc--ccHh----HH
Confidence 33334443445 66666665443 23443445555666688999999999999865321 1111 12
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 217 HLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 217 ~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
-=+..++...|+.++|..+|+.+..
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2255577789999999999998764
No 326
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=37.13 E-value=2e+02 Score=24.70 Aligned_cols=117 Identities=11% Similarity=-0.009 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH----hcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHcc
Q 043380 31 QRIDEAYQILESVEKGLEPDSLSYNILISACI----KTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHA 106 (246)
Q Consensus 31 g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 106 (246)
.+.+.|..+|....+....+......+-...+ ..+...++...+...... .++.......+....+.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---------SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---------CCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---------CCChHHHHHHHHHHHHC
Confidence 47899999998875322344444443333333 233355677777775554 23333344444555678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 107 KDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
|+++.|...|+.|.. ... ....-.--+.+++...|+.++ |..+|..+...
T Consensus 299 ~d~~~a~~~~~~l~~-~~~-~~~r~~YW~~ra~~~~g~~~~----a~~~~~~~a~~ 348 (618)
T 1qsa_A 299 GDRRGLNTWLARLPM-EAK-EKDEWRYWQADLLLERGREAE----AKEILHQLMQQ 348 (618)
T ss_dssp TCHHHHHHHHHHSCT-TGG-GSHHHHHHHHHHHHHTTCHHH----HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHccc-ccc-ccHhHHHHHHHHHHHcCCHHH----HHHHHHHHhcC
Confidence 999999999999876 322 234434457778888999999 99999988653
No 327
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=36.88 E-value=12 Score=27.76 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=66.3
Q ss_pred cchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccC---------CHHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 043380 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAK---------DLQSLLEIVFEMKSCCNLILD-RSTFTAMV 136 (246)
Q Consensus 67 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 136 (246)
.+.|..++.+|-...++.+.-+=.-...-|..+..+|++.| +.+...++++...+ .|++-= +..|+++|
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~-aGv~~viPHIYsSII 248 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALE-ANVEQVIPHVYSSII 248 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHH-TTCSCBCCEECGGGB
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHH-cCCCeecccccceec
Confidence 36678888888665444433333445667889999999887 34667788888888 887533 55688999
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+--...-++++ +.+++..+++.
T Consensus 249 Dk~TG~Trped----V~~ll~~~K~l 270 (275)
T 3m6y_A 249 DKETGNTKVEA----VRELLAVVKKL 270 (275)
T ss_dssp CTTTCCBCHHH----HHHHHHHHHHH
T ss_pred cCCCCCCCHHH----HHHHHHHHHHH
Confidence 87777778888 88888888764
No 328
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=36.23 E-value=89 Score=20.36 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=8.2
Q ss_pred hHHhhHHHhhCCCCCCCCC
Q 043380 190 DIVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~ 208 (246)
+....+|+.+-.++.|.+.
T Consensus 96 ~~~~~~F~~~D~d~~G~i~ 114 (161)
T 3fwb_A 96 DEIKRAFQLFDDDHTGKIS 114 (161)
T ss_dssp HHHHHHHHHHCTTCSSEEC
T ss_pred HHHHHHHHHHcCCCCCeEe
Confidence 3344444444444434433
No 329
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=36.16 E-value=90 Score=20.38 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=8.3
Q ss_pred HHhhHHHhhCCCCCCCCC
Q 043380 191 IVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~ 208 (246)
....+|..+-.++.|.+.
T Consensus 97 ~~~~~F~~~D~d~~G~I~ 114 (162)
T 1top_A 97 ELANCFRIFDKNADGFID 114 (162)
T ss_dssp HHHHHHHHHCTTCSSCBC
T ss_pred HHHHHHHHhCCCCCCcCc
Confidence 344455555444444443
No 330
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.77 E-value=1.2e+02 Score=21.87 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHH
Q 043380 21 NAVIEASREAQRIDEAYQILESVEKGLEPD----SLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTY 96 (246)
Q Consensus 21 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 96 (246)
++.+...++.|+++.+..+++. |..++ ..-++ .+...+..|+.+ +++.+.+.|..+.. +|..-.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~ 73 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEG---GANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVL----RKKNGA 73 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTC----CCTTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHc---CCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcc----cCCCCC
Confidence 4566677888998877777654 22222 22223 344446667654 44455555322111 111112
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcch
Q 043380 97 ATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR---STFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKP 173 (246)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~ 173 (246)
+.+...+..|+.+-+ +.+.+ .|..++. ..++ .+...+..|+.+- +.. +.+. |..++.
T Consensus 74 -t~L~~A~~~~~~~~v----~~Ll~-~g~~~~~~~~~g~t-~L~~A~~~~~~~~----~~~----Ll~~-----g~~~~~ 133 (285)
T 1wdy_A 74 -TPFLLAAIAGSVKLL----KLFLS-KGADVNECDFYGFT-AFMEAAVYGKVKA----LKF----LYKR-----GANVNL 133 (285)
T ss_dssp -CHHHHHHHHTCHHHH----HHHHH-TTCCTTCBCTTCCB-HHHHHHHTTCHHH----HHH----HHHT-----TCCTTC
T ss_pred -CHHHHHHHcCCHHHH----HHHHH-cCCCCCccCcccCC-HHHHHHHhCCHHH----HHH----HHHh-----CCCccc
Confidence 223334455665544 44444 4444331 1122 2333445566555 433 3333 332221
Q ss_pred h------------hHHHHHHHHHhcCChhHHhhHHHh
Q 043380 174 H------------LYVSMMHELAARVDYDIVKSPYRR 198 (246)
Q Consensus 174 ~------------~~~~li~~~~~~g~~~~a~~~~~~ 198 (246)
. .-.+.+...+..|+.+-+..+++.
T Consensus 134 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp CCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred ccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 1 011344455667888777777765
No 331
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=35.76 E-value=11 Score=27.57 Aligned_cols=91 Identities=8% Similarity=0.001 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC---------HHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 043380 67 LDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD---------LQSLLEIVFEMKSCCNLILD-RSTFTAMV 136 (246)
Q Consensus 67 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~p~-~~~~~~li 136 (246)
.+.|..++.+|-...++.+.-+=.-...-|..+..+|++.|- .+...++++...+ .|+.-= ++.|+++|
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~-aGv~~viPHIYssII 225 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALD-AGVSKIIPHIYSSII 225 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHH-HTCSCBCCBCCGGGB
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHH-cCCCeecccccceec
Confidence 366777888776654444333334456678899999999873 4667777777777 776433 45688899
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHh
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKR 162 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~ 162 (246)
+--...-++++ +.+++..+++.
T Consensus 226 Dk~TG~Trped----V~~ll~~~K~l 247 (249)
T 3m0z_A 226 DKASGNTRPAD----VRQLLEMTKQL 247 (249)
T ss_dssp CTTTCCBCHHH----HHHHHHHHHHH
T ss_pred cCCCCCCCHHH----HHHHHHHHHHh
Confidence 87777778888 89998888763
No 332
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.74 E-value=66 Score=18.71 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=44.0
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcC-ChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChh
Q 043380 117 FEMKSCCNLILDRSTFTAMVDALLYSG-SIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYD 190 (246)
Q Consensus 117 ~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 190 (246)
+.+.+ .|+.++..-. .++..+...+ ..-. +.++++.+.+. +...+..|....+..+...|-+.
T Consensus 6 ~~l~~-~g~~~t~~r~-~IL~~l~~~~~~~~s----~~el~~~l~~~-----~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKK-AGLKVTLPRL-KILEVLQEPDNHHVS----AEDLYKRLIDM-----GEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHH-TTCCCCHHHH-HHHHHHTSGGGSSBC----HHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHH-cCCCcCHHHH-HHHHHHHhCCCCCCC----HHHHHHHHHHh-----CCCCCHhhHHHHHHHHHHCCCeE
Confidence 34566 7887776553 4556665554 5666 88999999876 55567778888888888887653
No 333
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.72 E-value=1e+02 Score=20.96 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=39.4
Q ss_pred hHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 190 DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
+.+..+|..|...+.|..... -|......+-..|++++|.++|+.=++++
T Consensus 82 ~dp~~if~~L~~~~IG~~~Al----fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSP----LYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 458899999988887754433 58888888999999999999998765543
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.66 E-value=91 Score=21.30 Aligned_cols=56 Identities=4% Similarity=-0.003 Sum_probs=23.6
Q ss_pred HhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-h--CCCCCHHHHHHHHHHHHhcC
Q 043380 9 NREHWKLNTIVMNAVIEASREAQRIDEAYQILESVE-K--GLEPDSLSYNILISACIKTK 65 (246)
Q Consensus 9 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~--~~~~~~~t~~~li~~~~~~~ 65 (246)
++.|.+++..- ..++..+...+..-.|.++++.++ . +...+..|.---|+.+...|
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33344444432 233444444444444555555544 2 22334444333344444444
No 335
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.58 E-value=59 Score=18.14 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH-HhcCCh
Q 043380 152 ALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL-AARVDY 189 (246)
Q Consensus 152 a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~ 189 (246)
|.+.|.+|.+. .-.+..-||.-.|+.. +.-.++
T Consensus 5 ae~aF~~lL~~-----~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 5 AEKEFITMLKE-----NQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp HHHHHHHHHHH-----TTCCSSCCHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHH-----cCCCCCCcHHHHHHHhccCCCcc
Confidence 89999999888 4445567888888887 555443
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.62 E-value=2.3e+02 Score=25.82 Aligned_cols=112 Identities=14% Similarity=0.025 Sum_probs=64.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc-------
Q 043380 99 LLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP------- 171 (246)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p------- 171 (246)
++..+...+..+-|.++... +.-++..--.+.++|...|++++ |.++|++.-. |+.+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~----A~~~F~kAA~------gl~~~~~~~~~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVK----AVRCFKTTSL------VLYSHTSQFAV 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHH----HHHHHHTCCC------TTCSSCCSCGG
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHH----HHHHHHHHhh------hcccCcccccc
Confidence 44555556666655543322 22344443467889999999999 9999986432 1111
Q ss_pred ----------------chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcC
Q 043380 172 ----------------KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDG 227 (246)
Q Consensus 172 ----------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 227 (246)
...=|.+++..+-..+-++.+.++-+.....- ..-.+......|+.++++.+..|
T Consensus 880 ~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~-~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHhhCC
Confidence 11246777777777887777766666544221 11223333336777777766544
No 337
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional protein, transcripti repressor, shuttling, dimer, oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli} SCOP: a.176.1.1 c.1.23.2
Probab=34.12 E-value=2e+02 Score=25.06 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=62.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHL 175 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 175 (246)
+..+|.-|+-...-.-++..|-+..- -.||..|-..||.-=...++|.+ .+... +..-++..|
T Consensus 148 ~~~~l~e~~ls~~egv~Lm~laeaLl---riPd~~t~d~li~dk~~~~~w~~----------h~~~s----~s~~~~ast 210 (669)
T 1k87_A 148 VQGLLQEFSLSSQEGVALMCLAEALL---RIPDKATRDALIRDKISNGNWQS----------HIGRS----PSLFVNAAT 210 (669)
T ss_dssp HHHHHHTTTCCTTHHHHHHHHHHHHH---TSSCHHHHHHHHHHTTTTTC----------------CC----CTTTTSTTH
T ss_pred HHHHHHHhcCCChHHhHHHHHHHHHh---cCCChhhHHHHHHhhcchhhHHH----------HhCCC----chhhHhHHH
Confidence 55666666555444333333333332 23676666666665555666655 33222 245677788
Q ss_pred HHHHHHHHHh-cCChhHHhhHHHhhCCCCCCCCCchhhhHHH----HHHHHHHHhcCChhHHHHHHHHHHhhcc
Q 043380 176 YVSMMHELAA-RVDYDIVKSPYRRMWPDSTGTISPEVQEEAG----HLLMEAALNDGQVDLALDKLSNTITRWK 244 (246)
Q Consensus 176 ~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~ 244 (246)
|..++.+-.- ....+.....+..+.... ..|-+. .+. ..+..-|+-....++|.+..+++.++|.
T Consensus 211 w~L~~t~~v~~~~~~~~~~~~l~~ll~~~---~~p~ir-~~v~~~mr~~~~qFVaGet~~ea~~~i~~L~~~G~ 280 (669)
T 1k87_A 211 WGLLFTGKLVSTHNEASLSRSLNRIIGKS---GEPLIR-KGVDMAMRLMGEQFVTGETIAEALANARKLEEKGF 280 (669)
T ss_dssp HHHHSCC------CHHHHHHHHHHHTTTT---CHHHHH-HHHHHHHHHHHGGGCSBSSHHHHHHHHHHHHTTTC
T ss_pred HHHHHhhhhhhccccccHHHHHHHHHHhc---ccHHHH-HHHHHHHHHhhCeeeCCCCHHHHHHHHHHHHhCCC
Confidence 8765322111 112334455555555332 112111 111 1223345556778999999999988774
No 338
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=33.81 E-value=1.8e+02 Score=23.17 Aligned_cols=65 Identities=14% Similarity=-0.001 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhcCCc--chHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 49 PDSLSYNILISACIKTKKL--DVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 49 ~~~~t~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
++..||..+|+-.....++ +++..+++.+.. |-.++...=..|+..+.+--..++...+.+-|++
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~--------G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~ 87 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQIMT--------GNARPAQIAAFAVAMTMKAPTADEVGELAGVMLS 87 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHHHT--------TCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4556899999998887754 789999999998 4456666655566666676678887777777765
No 339
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=33.08 E-value=1e+02 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=10.0
Q ss_pred hhHHhhHHHhhCCCCCCCCC
Q 043380 189 YDIVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~ 208 (246)
.+....+|..+-.++.|.+.
T Consensus 94 ~~~~~~~F~~~D~d~~G~i~ 113 (161)
T 1dtl_A 94 EEELSDLFRMFDKNADGYID 113 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEEE
T ss_pred HHHHHHHHHHhCCCCCCcCc
Confidence 34455556655544444443
No 340
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=32.98 E-value=1.9e+02 Score=23.09 Aligned_cols=68 Identities=6% Similarity=0.050 Sum_probs=52.5
Q ss_pred cCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccC
Q 043380 15 LNTIVMNAVIEASREAQR--IDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQ 82 (246)
Q Consensus 15 ~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 82 (246)
++..+|-.+|.....-.+ .+++..+++.+-+|-.++...=..|+..+.+....++...+.+.|.+.+.
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~ 90 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAH 90 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCC
Confidence 344579999998887766 47899999999888777777777777777777788888888888987763
No 341
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.44 E-value=2e+02 Score=24.50 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChhhhhhHHHHHHHHHHH
Q 043380 132 FTAMVDALLYSGSIKVVGLYALCIFGEIVK 161 (246)
Q Consensus 132 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 161 (246)
-.-++..|++.|-.+. |.++++.+-.
T Consensus 519 ~e~vL~iCa~l~L~~~----ar~I~k~~g~ 544 (570)
T 3f3f_C 519 IEWMLSICVEWRLPEI----AKEIYTTLGN 544 (570)
T ss_dssp HHHHHHHHHHHTCHHH----HHHHHHHHHC
T ss_pred HHHHHHHHHHCCChHH----HHHHHHHHHH
Confidence 3444555555555555 5555555443
No 342
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.37 E-value=1.4e+02 Score=21.47 Aligned_cols=51 Identities=8% Similarity=0.115 Sum_probs=28.3
Q ss_pred hHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 190 DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
+.|..+|+.+..... ........-.-...+-.|.++|.+++|.++|++...
T Consensus 95 ESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 95 ESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 457777777764431 011111100122345568889999999999888543
No 343
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=31.90 E-value=52 Score=22.46 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHh
Q 043380 107 KDLQSLLEIVFEMKSCCNLI-LDRSTFTAMVDALLY 141 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~ 141 (246)
.++++|.+.+..|++ .-+. -.+..||.+|..+..
T Consensus 72 ~~y~KA~ecL~~lR~-~~i~~~ep~~yN~Fl~~LK~ 106 (152)
T 1rw2_A 72 PYFMKSIDCIRAFRE-EAIKFSEEQRFNNFLKALQE 106 (152)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHTCSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-HHHhccChHHHHHHHHHHHH
Confidence 467889999998887 3232 246679988887653
No 344
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=31.51 E-value=55 Score=24.09 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHH-h-------CCCCCHHHHHHHHHHHHhcC---------CcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 33 IDEAYQILESVE-K-------GLEPDSLSYNILISACIKTK---------KLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 33 ~~~a~~~~~~~~-~-------~~~~~~~t~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
++.|..++.+|- + +-.....-|..+-.+|.+.| +.+.-.++++-.++.|++ .+-| ..
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~----~viP--HI 220 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVS----KIIP--HI 220 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCS----CBCC--BC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCC----eecc--cc
Confidence 688999999885 3 22345677899999999987 457788888888888432 2223 46
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
|+++|+--.-.-+++++.++|..+++
T Consensus 221 YssIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 221 YSSIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp CGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred cceeccCCCCCCCHHHHHHHHHHHHH
Confidence 77888776667789999999988876
No 345
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.39 E-value=1.8e+02 Score=22.46 Aligned_cols=162 Identities=10% Similarity=-0.041 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCCHHHHHH----HHHHHHhCCCCCCC
Q 043380 53 SYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKDLQSLLE----IVFEMKSCCNLILD 128 (246)
Q Consensus 53 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~p~ 128 (246)
.|.++..=|.+.+++++|.+++..--. .+.+.|+...|-+ +.+-..+ .++.+|
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------------~ll~~~Q~~sa~DLa~llvev~~~-~~~~~~ 91 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL----------------------SFLKAKQGGSGTDLIFYLLEVYDL-AEVKVD 91 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------HHHHCCCcchHHHHHHHHHHHHHH-cCCCCC
Confidence 344445556666777777666544221 1223455444333 4555555 677777
Q ss_pred HHHHHHHHHHHHhcCChh-hhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhC-------
Q 043380 129 RSTFTAMVDALLYSGSIK-VVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMW------- 200 (246)
Q Consensus 129 ~~~~~~li~~~~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~------- 200 (246)
.....-++..+.....-+ .......+....-.+.+. .-.-++.....+-..|.+.|++.+|+..|-.-.
T Consensus 92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~---~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~ 168 (312)
T 2wpv_A 92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE---YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKY 168 (312)
T ss_dssp HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS---CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHH
Confidence 777777777666643221 101112233333333210 112355666777788888888888887664211
Q ss_pred --------CCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043380 201 --------PDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 201 --------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
...+...+.+.+.+ ..-.+-.|...|++..|..+|+...+
T Consensus 169 a~~l~~w~~~~~~~~~~e~dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 169 VDLLWDWLCQVDDIEDSTVAEF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 00000012222211 22234456677888888888877654
No 346
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.22 E-value=1.3e+02 Score=20.76 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=54.8
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD-RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
...-|..-...-|.---.+++ +.++|..|.. .|+--. +..|-.....+-..|++.. |.++|+.-.+.
T Consensus 58 ~YknD~RyLklWl~ya~~~~~---p~~if~~L~~-~~IG~~~AlfY~~wA~~lE~~~~~~~----A~~Iy~~Gi~~---- 125 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHN-QGIGVSLAQFYISWAEEYEARENFRK----ADAIFQEGIQQ---- 125 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHH-TTSSTTBHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHT----
T ss_pred hhccCHHHHHHHHHHHHhcCC---HHHHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc----
Confidence 345566544444433222344 6789999999 888776 6778889999999999999 99999999988
Q ss_pred CCCCcchh
Q 043380 167 PGLWPKPH 174 (246)
Q Consensus 167 ~~~~p~~~ 174 (246)
+-.|-..
T Consensus 126 -~A~P~~~ 132 (164)
T 2wvi_A 126 -KAEPLER 132 (164)
T ss_dssp -TCBSHHH
T ss_pred -CCCcHHH
Confidence 7778653
No 347
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=30.84 E-value=61 Score=24.13 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHH-h-------CCCCCHHHHHHHHHHHHhcC---------CcchHHHHHHHHHhccCCCCCCCCCccHHH
Q 043380 33 IDEAYQILESVE-K-------GLEPDSLSYNILISACIKTK---------KLDVTMPFNEQLKDNGQKCSSGGFHPDIFT 95 (246)
Q Consensus 33 ~~~a~~~~~~~~-~-------~~~~~~~t~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 95 (246)
++.|..++.+|- + +-.....-|..+-.+|.+.| +.+.-.++++-.++.|++ .+-| ..
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~----~viP--HI 243 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVE----QVIP--HV 243 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCS----CBCC--EE
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCC----eecc--cc
Confidence 688999999985 3 22345677899999999987 557788888888888532 2223 46
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 043380 96 YATLLMGFRHAKDLQSLLEIVFEMKS 121 (246)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (246)
|+++|+--.-.-+++++.+++..+++
T Consensus 244 YsSIIDk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 244 YSSIIDKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp CGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred cceeccCCCCCCCHHHHHHHHHHHHH
Confidence 77888776666788999999988876
No 348
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.67 E-value=35 Score=19.01 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=18.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCH
Q 043380 105 HAKDLQSLLEIVFEMKSCCNLILDR 129 (246)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~p~~ 129 (246)
..-|++.|...|..++....++|+.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3569999999999998734455543
No 349
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.53 E-value=1.3e+02 Score=21.06 Aligned_cols=156 Identities=6% Similarity=-0.016 Sum_probs=76.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC-------
Q 043380 23 VIEASREAQRIDEAYQILESVEKG-----LEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH------- 90 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------- 90 (246)
.+...+..|+.+-+..+++.-..- ...|..-++.|..+ +..|+.+ +.+.+.+.|..+......
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~ 114 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA-VINQNVN----LVRALLARGASVSARATGSVFHYRP 114 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCT
T ss_pred HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH-HHcCCHH----HHHHHHhCCCCCCcccCCcceeecc
Confidence 445556778888777777653210 11122333444433 5556654 444444553322111100
Q ss_pred --ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 91 --PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRS--TFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 91 --p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
.|..-. +.+...+..|+.+-+..++ + .|..++.. .-.+-+...+..|+.+. +..+++.+.+.
T Consensus 115 ~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~-~ga~~~~~d~~g~t~L~~A~~~~~~~~----~~~i~~~Ll~~---- 180 (232)
T 2rfa_A 115 HNLIYYGE-HPLSFAACVGSEEIVRLLI----E-HGADIRAQDSLGNTVLHILILQPNKTF----ACQMYNLLLSY---- 180 (232)
T ss_dssp TCSCCCCS-SHHHHHHHHTCHHHHHHHH----H-TTCCTTCCCTTSCCHHHHHHTCSCHHH----HHHHHHHHHHT----
T ss_pred cccccCCC-CHHHHHHHcCCHHHHHHHH----H-CCCCCCCCCCCCCCHHHHHHHcCChHH----HHHHHHHHHhc----
Confidence 000112 2333444566665444444 4 45444321 11234455567788888 87888888876
Q ss_pred CCCCc---------chhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 167 PGLWP---------KPHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 167 ~~~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
|..+ |..-.+ -+...+..|+.+-+..+++.-
T Consensus 181 -g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 181 -DGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp -TCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHH
T ss_pred -CCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcC
Confidence 4322 222222 234445677777776666654
No 350
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.42 E-value=1.7e+02 Score=24.60 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHH-HHHHHHHhcCChhHHHHHHHHHHh
Q 043380 173 PHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGH-LLMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
...++.+++.|...+.++.|.++..+..-.... .+ +...-+|. .+...+.-.+++.+|.+.+..-..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~-~s-n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTD-VS-SSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTT-SC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCccc-CC-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 477899999999999999999999998632211 11 11111232 245567779999999998876543
No 351
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=29.35 E-value=1.2e+02 Score=19.90 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=8.2
Q ss_pred HHhhHHHhhCCCCCCCCC
Q 043380 191 IVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~ 208 (246)
....+|+.+-.++.|.+.
T Consensus 102 ~~~~~F~~~D~d~~G~i~ 119 (169)
T 3qrx_A 102 EILKAFRLFDDDNSGTIT 119 (169)
T ss_dssp HHHHHHHHHCTTCSSSBC
T ss_pred HHHHHHHHhCCCCCCcCC
Confidence 344445555444444443
No 352
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.59 E-value=1e+02 Score=21.02 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=43.5
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHhcCChhh
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCC--NLILDRSTFTAMVDALLYSGSIKV 147 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~~~~~~ 147 (246)
|+.++.. =..++..+...++.-.|.++++.+.+ . +...+..|..--+..+...|-+.+
T Consensus 28 g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~-~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 28 GLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQ-AEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp TCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHH-HCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 6776553 34567777777888899999999988 5 556676666667788888888776
No 353
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.49 E-value=1.5e+02 Score=20.49 Aligned_cols=49 Identities=10% Similarity=-0.044 Sum_probs=31.5
Q ss_pred hHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 190 DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
+.+..+|..|...+.|.-... -|......+-..|++.+|.++|+.=+++
T Consensus 77 ~~p~~if~~L~~~~IG~~~Al----fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQ----FYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhhHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345667777776665543332 4666667777777888887777665544
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.15 E-value=1.5e+02 Score=20.42 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=40.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-CC--CHHHHHHHHH-H-----HHhcCCcchHHHHHHHHHhc
Q 043380 27 SREAQRIDEAYQILESVEKGL-EP--DSLSYNILIS-A-----CIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 27 ~~~~g~~~~a~~~~~~~~~~~-~~--~~~t~~~li~-~-----~~~~~~~~~a~~~~~~m~~~ 80 (246)
+...|++=+|.++|+...+.. .+ ....|..||. . ..+.|+...|..++.+....
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334599999999999997433 34 4566777777 2 34579999999999988764
No 355
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=27.59 E-value=1.2e+02 Score=19.28 Aligned_cols=61 Identities=11% Similarity=-0.039 Sum_probs=36.4
Q ss_pred HHhcCChhHHhhHHHhhC----------------CCCCCCCCchh-hhHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 043380 183 LAARVDYDIVKSPYRRMW----------------PDSTGTISPEV-QEEAGHLLMEAALNDGQVDLALDKLSNTITRW 243 (246)
Q Consensus 183 ~~~~g~~~~a~~~~~~~~----------------~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 243 (246)
.++.|++++|.+.+++.. ..+....+.++ ...+-..|+.+..-..-.++-+.+|+++..+|
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~~l~~AH~~QT~Liq~Ea~g~~~~~slLlvHAQDhLMta~~~~~la~e~I~lyk~~~~~~ 109 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKEAINEAHHFQTELIQSEARGEKTEISVLLIHAQDHLMNAITVKELAAEFIDLYKKLEAKG 109 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 467889998888887554 11112233332 22234456666666666777777887776554
No 356
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=26.98 E-value=1.3e+02 Score=19.36 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=8.5
Q ss_pred HHhhHHHhhCCCCCCCCC
Q 043380 191 IVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~ 208 (246)
.....|..+-.++.|.+.
T Consensus 84 ~l~~~F~~~D~d~~G~I~ 101 (148)
T 1exr_A 84 ELIEAFKVFDRDGNGLIS 101 (148)
T ss_dssp HHHHHHHHHSTTCSSCBC
T ss_pred HHHHHHHHhCCCCCCcCC
Confidence 344455555444444444
No 357
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.43 E-value=37 Score=22.28 Aligned_cols=15 Identities=7% Similarity=-0.124 Sum_probs=8.1
Q ss_pred HhcCChhHHhhHHHh
Q 043380 184 AARVDYDIVKSPYRR 198 (246)
Q Consensus 184 ~~~g~~~~a~~~~~~ 198 (246)
+..|+.+-+..+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 445555555555554
No 358
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=25.73 E-value=64 Score=22.87 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=12.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 043380 219 LMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 219 li~~~~~~g~~~~a~~~~~~m~ 240 (246)
+|.++...|++++|.+++.++.
T Consensus 38 vI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 38 LIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555556666666666555544
No 359
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=25.64 E-value=2.2e+02 Score=21.49 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=45.6
Q ss_pred HHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCC
Q 043380 137 DALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPD 202 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 202 (246)
..|....++.. ...++..|...- .-.|+......++++|.+.-+-.+|.+.+....++
T Consensus 181 YiC~t~eRF~a----v~~vL~~mV~~l----~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~ 238 (268)
T 2fv2_A 181 YICQTYERFSH----VAMILGKMVLQL----SKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPD 238 (268)
T ss_dssp HHTSSHHHHHH----HHHHHHHHHHHT----TTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCG
T ss_pred HHHccHHHHHH----HHHHHHHHHHHH----hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcH
Confidence 34444556666 777888888761 34689999999999999999999999999987654
No 360
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.43 E-value=3.8e+02 Score=24.24 Aligned_cols=149 Identities=7% Similarity=-0.022 Sum_probs=84.5
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCcc
Q 043380 21 NAVIEASREAQR---IDEAYQILESVEK-----GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPD 92 (246)
Q Consensus 21 ~~li~~~~~~g~---~~~a~~~~~~~~~-----~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 92 (246)
..++...|+.|. .+.|.+.|+.... .++||.. ..+...-.+.|..++-..+++..... .+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~----------~~ 757 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA----------QL 757 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC----------CS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc----------CC
Confidence 446677777776 5678888877542 2456543 23333334567666666677777664 34
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhh-cCCCCCC
Q 043380 93 IFTYATLLMGFRHAKDLQSLLEIVFEMKSCCN-LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRV-CSNPGLW 170 (246)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~ 170 (246)
..--..++.+++...+.+...++++.... .. +++.. .. .++.+.+. +... -..+|+-+.+.- .......
T Consensus 758 ~~ek~~ll~aL~~~~d~~~l~~~L~~~l~-~~~ir~qd-~~-~~~~~v~~--n~~g----~~~~~~f~~~n~~~l~~~~~ 828 (909)
T 4fke_A 758 VNEADKLRSALACSNEVWLLNRYLGYTLN-PDLIRKQD-AT-STINSIAS--NVIG----QPLAWDFVQSNWKKLFQDYG 828 (909)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHTTC-TTTSCGGG-HH-HHHHHHHH--STTH----HHHHHHHHHHHCTTTTTSSS
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhC-CCCCchhh-HH-HHHHHHhc--ChHH----HHHHHHHHHHHHHHHHHHhC
Confidence 44456789999999999999999988876 33 44432 22 23333333 2233 233344443321 0111233
Q ss_pred cchhhHHHHHHHHHhcCChh
Q 043380 171 PKPHLYVSMMHELAARVDYD 190 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~ 190 (246)
.....+..+|...+..-..+
T Consensus 829 ~~~~~~~~~i~~~~~~~~t~ 848 (909)
T 4fke_A 829 GGSFSFSNLIQGVTRRFSSE 848 (909)
T ss_dssp SCCCCHHHHHHHHHTTCCSH
T ss_pred CCchHHHHHHHHHHHhcCCH
Confidence 44456788887776654433
No 361
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.20 E-value=1.3e+02 Score=23.10 Aligned_cols=77 Identities=5% Similarity=0.003 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH----HhcCCh
Q 043380 114 EIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL----AARVDY 189 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~ 189 (246)
++++.+.+ .|+.|...++.-++..+++.=.++. +.++|+.+... |...-.....+++..+ ....++
T Consensus 209 ~L~~hL~~-~~i~~~~~~~~W~l~lF~~~lp~~~----~lrlwD~~l~~-----g~~~l~~valaiL~~~~~~ll~~~~~ 278 (331)
T 3qye_A 209 DLYNHLEE-HEIGPSLYAAPWFLTMFASQFPLGF----VARVFDMIFLQ-----GTEVIFKVALSLLGSHKPLILQHENL 278 (331)
T ss_dssp HHHHHHHH-TTCCGGGTSHHHHHSTTTTTSCHHH----HHHHHHHHHHH-----CTTHHHHHHHHHHHHTHHHHHTCCSH
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHhhhhCCHHH----HHHHHHHHHHC-----CcHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 45666777 7888888888888888888777888 99999998887 5442222223333322 223477
Q ss_pred hHHhhHHHhhC
Q 043380 190 DIVKSPYRRMW 200 (246)
Q Consensus 190 ~~a~~~~~~~~ 200 (246)
++...+++...
T Consensus 279 ~~il~~l~~~~ 289 (331)
T 3qye_A 279 ETIVDFIKSTL 289 (331)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhC
Confidence 77777777743
No 362
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=25.11 E-value=63 Score=15.47 Aligned_cols=23 Identities=13% Similarity=-0.044 Sum_probs=17.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 043380 219 LMEAALNDGQVDLALDKLSNTIT 241 (246)
Q Consensus 219 li~~~~~~g~~~~a~~~~~~m~~ 241 (246)
.++-|...|..++|..+-.+++.
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 56777888888888888776653
No 363
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=25.08 E-value=1.9e+02 Score=20.53 Aligned_cols=58 Identities=7% Similarity=-0.035 Sum_probs=33.2
Q ss_pred cchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043380 171 PKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNT 239 (246)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 239 (246)
.+..-+..++..+...-..+++..++..+. ++.|.+ .|.-++..+.+.. ...++|+..
T Consensus 134 I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~dg~I-------~~~eF~~~~~~l~---~~~~~F~~~ 191 (220)
T 3sjs_A 134 LEPHEILPALQQLGFYINQRTSLLLHRLFA-RGMAFC-------DLNCWIAICAFAA---QTRSAYQMI 191 (220)
T ss_dssp ECHHHHHHHHHHHTCCCCHHHHHHHHHHHC---CCSE-------EHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CCCCcC-------cHHHHHHHHHHHH---HHHHHHHHh
Confidence 344444445554444445567888888887 554544 3666776666543 566666666
No 364
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=25.01 E-value=1.4e+02 Score=20.44 Aligned_cols=19 Identities=5% Similarity=0.302 Sum_probs=12.5
Q ss_pred hHHhhHHHhhCC-CCCCCCC
Q 043380 190 DIVKSPYRRMWP-DSTGTIS 208 (246)
Q Consensus 190 ~~a~~~~~~~~~-~~~~~~~ 208 (246)
+.+..+|..+.. ++.|.+.
T Consensus 152 ~~~~~~~~~~D~~d~dg~Is 171 (204)
T 3e3r_A 152 EVLRRFLDNFDSSEKDGQVT 171 (204)
T ss_dssp HHHHHHHHHHSCSSCCSCEE
T ss_pred HHHHHHHHHhhccCCCCcCc
Confidence 457788888875 6556554
No 365
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=24.88 E-value=1.6e+02 Score=19.63 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcC---ChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHh
Q 043380 175 LYVSMMHELAARV---DYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALN 225 (246)
Q Consensus 175 ~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 225 (246)
+..-+...+...| .-+++..++..+..++.|.+ +|.-++..+..
T Consensus 102 ~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i-------~~~eF~~~~~~ 148 (179)
T 2f2o_A 102 SAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV-------NYEEFVQMMTA 148 (179)
T ss_dssp CHHHHHHHHHHC--CCCHHHHHHHHHHHCTTCSSSE-------EHHHHHHHSCC
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcC-------cHHHHHHHHHH
Confidence 3333444443333 44567777777765544443 35555555543
No 366
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.87 E-value=1.4e+02 Score=22.59 Aligned_cols=143 Identities=18% Similarity=0.145 Sum_probs=62.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCccHH--HHHHH
Q 043380 25 EASREAQRIDEAYQILESVEKGLEP---DSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHPDIF--TYATL 99 (246)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~~~~---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~--~~~~l 99 (246)
...++.|+.+-+..++++. |..+ |....+.+..+... +.......+.+-+.+.| ..++.. .-.+.
T Consensus 173 ~~A~~~g~~~~v~~LL~~~--gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~g-------ad~n~~d~~g~t~ 242 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEM--GADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHG-------ADVNVRGERGKTP 242 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHS--CCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTT-------CCTTCCCGGGCCH
T ss_pred HHHHHCCCHHHHHHHHhcc--CCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCC-------CCCCCcCCCCCCH
Confidence 3345667776665555442 2222 22222333333222 22333444555556663 333211 11123
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhH
Q 043380 100 LMGFRHAKDLQSLLEIVFEMKSCCNLILD---RSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLY 176 (246)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~ 176 (246)
|...+..|..+.+..++.. .|..++ ..-.+.|..+ +..|+.+- +. .+.+. |..||..+
T Consensus 243 L~~a~~~~~~~~v~~Ll~~----~~~~vn~~d~~G~TpL~~A-~~~g~~~i----v~----~Ll~~-----GAd~n~~~- 303 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTALLLA-VELKLKKI----AE----LLCKR-----GASTDCGD- 303 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTS----TTCCTTCBCTTSCBHHHHH-HHTTCHHH----HH----HHHTT-----SCSSTTCC-
T ss_pred HHHHHHhhhhHHHHHHHHh----cCCcccCcCCCCCCHHHHH-HHcCCHHH----HH----HHHHC-----CCCCCCCC-
Confidence 3444566776665554432 232222 1112233332 34555544 33 33444 56666544
Q ss_pred HHHHHHHHhcCChhHHhhHHHh
Q 043380 177 VSMMHELAARVDYDIVKSPYRR 198 (246)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~ 198 (246)
.+...++.|+.+-+.-+++.
T Consensus 304 --~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 304 --LVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp --HHHHHHHTTCHHHHHHHHHT
T ss_pred --HHHHHHHcCCHHHHHHHHHC
Confidence 34444566776655555543
No 367
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=24.38 E-value=84 Score=18.70 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=21.6
Q ss_pred CCCCCcchhhHHHHHHHHHhcCChhHHhhHHHhh
Q 043380 166 NPGLWPKPHLYVSMMHELAARVDYDIVKSPYRRM 199 (246)
Q Consensus 166 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 199 (246)
-|++.|+..||+-+...+-+..-..+++.+..++
T Consensus 29 IPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3577888888888777655554444555555443
No 368
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=24.35 E-value=43 Score=18.50 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCH
Q 043380 30 AQRIDEAYQILESVEKGLEPDS 51 (246)
Q Consensus 30 ~g~~~~a~~~~~~~~~~~~~~~ 51 (246)
.-+++.|...|...+..++|+.
T Consensus 32 ~Wd~~~A~~~F~~~~~~IP~eA 53 (57)
T 2jp7_A 32 NWNYEVAIKGFQSSMNGIPREA 53 (57)
T ss_dssp TTCSHHHHHHHHHSTTTSCHHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHH
Confidence 5668888888888755555544
No 369
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=23.87 E-value=1.4e+02 Score=18.80 Aligned_cols=47 Identities=30% Similarity=0.355 Sum_probs=25.7
Q ss_pred CChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcC---ChhHHHHHHHHHH
Q 043380 187 VDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDG---QVDLALDKLSNTI 240 (246)
Q Consensus 187 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~ 240 (246)
...+....+|..+-.++.|.+... -+...+...| ..+++.++++.+-
T Consensus 76 ~~~~~~~~~F~~~D~d~~G~i~~~-------el~~~l~~~g~~~~~~~~~~~~~~~d 125 (142)
T 2bl0_C 76 TSEDILRQAFRTFDPEGTGYIPKA-------ALQDALLNLGDRLKPHEFAEFLGITE 125 (142)
T ss_dssp CCHHHHHHHHHHTCCSSCSCEEHH-------HHHHHHHHSSSCCCHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHCCCCCCcCcHH-------HHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 345667777777766666655433 2333333333 3355666666554
No 370
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=23.85 E-value=1e+02 Score=19.56 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=4.7
Q ss_pred hHHhhHHHhhC
Q 043380 190 DIVKSPYRRMW 200 (246)
Q Consensus 190 ~~a~~~~~~~~ 200 (246)
+++..++..+.
T Consensus 112 ~~~~~~~~~~d 122 (145)
T 2bl0_B 112 SEVEELMKEVS 122 (145)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHcC
Confidence 34444444443
No 371
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.62 E-value=54 Score=21.44 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 043380 19 VMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPF 73 (246)
Q Consensus 19 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~ 73 (246)
.|--.|...+.+++.+-|+++++-+.. .-+...|.+++-.|-..=++|-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe--~g~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQ--EEKRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTT--SCSHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH--cCchHHHHHHHHHHHhccChHHHHHH
Confidence 345567777888999999999988763 34667788888888877777777664
No 372
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=23.41 E-value=2.6e+02 Score=21.59 Aligned_cols=83 Identities=13% Similarity=-0.030 Sum_probs=50.1
Q ss_pred HhcCCcchHHH----HHHHHHhccCCCCCCCCCccHHHHHHHHHHHHccCC-----HHHHHHHHHHHHhCCC--CCCCHH
Q 043380 62 IKTKKLDVTMP----FNEQLKDNGQKCSSGGFHPDIFTYATLLMGFRHAKD-----LQSLLEIVFEMKSCCN--LILDRS 130 (246)
Q Consensus 62 ~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~--~~p~~~ 130 (246)
.+.|....|-+ +.+-..+. +.+++......++..+..... .+-..+....-.+ .| -.-|+.
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~-------~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~-~g~~~~Gdp~ 135 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLA-------EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIK-FSEYKFGDPY 135 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT-------TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHH-TSSCTTCCHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhh-cCCCCCCCHH
Confidence 34555544444 34555555 677788787778777765432 1223333344443 22 223577
Q ss_pred HHHHHHHHHHhcCChhhhhhHHHHHH
Q 043380 131 TFTAMVDALLYSGSIKVVGLYALCIF 156 (246)
Q Consensus 131 ~~~~li~~~~~~~~~~~~~~~a~~~~ 156 (246)
....+...|.+.+++.+ |+.-|
T Consensus 136 LH~~~a~~~~~e~~~~~----A~~H~ 157 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYE----AERYF 157 (312)
T ss_dssp HHHHHHHHHHHTTCHHH----HHHHH
T ss_pred HHHHHHHHHhhcCCHHH----HHHHH
Confidence 78888889999999888 77655
No 373
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=23.07 E-value=2.7e+02 Score=21.76 Aligned_cols=91 Identities=9% Similarity=-0.014 Sum_probs=52.7
Q ss_pred HHccCCHHHHHHH----HHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcC-CCCCCcchhhHH
Q 043380 103 FRHAKDLQSLLEI----VFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCS-NPGLWPKPHLYV 177 (246)
Q Consensus 103 ~~~~~~~~~a~~~----~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~p~~~~~~ 177 (246)
+.+.|+...|-++ ++-..+ .++.+|.....-++..+.....-+.. =.++.+.+.+=+.. ...-.-|+..-.
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~rL~~L~~~~~~~~p~---r~~fi~~ai~WS~~~g~~~~Gdp~LH~ 140 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGKLLGCLRLFQPGEPV---RKRFVKEMIDWSKKFGDYPAGDPELHH 140 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSCTTCHH---HHHHHHHHHHHHHHHSSCTTCCHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHHhhcCCCCCCCHHHHH
Confidence 3455555443333 344555 67778887777888877776654430 12233332221110 011234567777
Q ss_pred HHHHHHHhcCChhHHhhHHH
Q 043380 178 SMMHELAARVDYDIVKSPYR 197 (246)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~ 197 (246)
.+-..|.+.+++.+|+..|-
T Consensus 141 ~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 141 VVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 78888899999999988884
No 374
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.88 E-value=1.9e+02 Score=19.83 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHH
Q 043380 55 NILISACIKTKKLDVTMPFNEQLK 78 (246)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~m~ 78 (246)
..+|.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555666666666666666654
No 375
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=22.85 E-value=1.6e+02 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=8.8
Q ss_pred HHhhHHHhhCCCCCCCCC
Q 043380 191 IVKSPYRRMWPDSTGTIS 208 (246)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~ 208 (246)
.....|..+-.++.|.+.
T Consensus 80 ~l~~~F~~~D~d~~G~I~ 97 (143)
T 2obh_A 80 EILKAFKLFDDDETGKIS 97 (143)
T ss_dssp HHHHHHHHHCTTCSSSBC
T ss_pred HHHHHHHHhCCCCCCcCc
Confidence 344455555444445444
No 376
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.65 E-value=4.4e+02 Score=23.97 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCCc-----------
Q 043380 23 VIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFHP----------- 91 (246)
Q Consensus 23 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p----------- 91 (246)
++..|...|..+-|.++.... +.+...--.+-.+|...|++++|...|++.-. |+........+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhhc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcc
Confidence 666777778777666544333 33444334567778889999999999987642 22111111111
Q ss_pred -----cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcC
Q 043380 92 -----DIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDR----STFTAMVDALLYSG 143 (246)
Q Consensus 92 -----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~ 143 (246)
...-|..++..+-+.+-++-+.++-+...+ .--.-|. ..|+.+.++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~-~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA-SKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHhhCC
Confidence 112467777777888888877777666655 2111122 24566666655443
No 377
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.59 E-value=2.6e+02 Score=21.40 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=33.1
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLI 126 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 126 (246)
|+.|...++..++..+++.=.++.+..+|+.+.. .|..
T Consensus 218 ~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~-~g~~ 255 (331)
T 3qye_A 218 EIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFL-QGTE 255 (331)
T ss_dssp TCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHH-HCTT
T ss_pred CCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHH-CCcH
Confidence 7888888899999999988889999999999988 6643
No 378
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=22.40 E-value=3.2e+02 Score=22.33 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=22.9
Q ss_pred hHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 043380 190 DIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTITR 242 (246)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 242 (246)
++..++|+.+..++.|.+...- ...++..+...=.-+++.++++++-..
T Consensus 375 eeLreAFk~fDkDgdG~IS~eE----Lr~vL~~lGe~LSdeEIdeLfke~D~D 423 (440)
T 3u0k_A 375 EEIREAFRVFDKDGNGYISAAE----LRHVMTNLGEKLTDEEVDEMIREADID 423 (440)
T ss_dssp HHHHHHHHHHCTTCSSEECHHH----HHHHHHHHTCCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCCcCcCCHHH----HHHHHHHhCCCCCHHHHHHHHHHhCCC
Confidence 4455566666666656665432 222222222222234555666655433
No 379
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.29 E-value=1.1e+02 Score=16.93 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCC
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILD 128 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 128 (246)
.|..+...++.+ ..|+.+.|...+-.|.. .+..|+
T Consensus 23 ld~~~I~~vL~a--~~gdvd~aI~~LL~m~~-~~~~~~ 57 (59)
T 1wgl_A 23 MDQEVIRSVLEA--QRGNKDAAINSLLQMGE-EPSGPS 57 (59)
T ss_dssp SCHHHHHHHHTT--TTTCHHHHHHHHHHSSC-CCCSCC
T ss_pred CCHHHHHHHHHH--cCCCHHHHHHHHHcCcC-CCCCCC
Confidence 444444444444 46889999999988887 666665
No 380
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.22 E-value=2.4e+02 Score=20.70 Aligned_cols=91 Identities=13% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCc----chhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCch
Q 043380 135 MVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWP----KPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPE 210 (246)
Q Consensus 135 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 210 (246)
-++.+....++++ |..++++..+... ++++ +.......+..-.....-..+..+.+++.. . ..+.
T Consensus 24 eLDv~IA~r~fee----Av~lle~~~~~l~---~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~---~~~~ 92 (235)
T 2d2s_A 24 EIDIELARLRFES----AVETLLDIESQLE---DLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-S---NEIV 92 (235)
T ss_dssp HHHHHHHTTCHHH----HHHHHHHHHHHHH---HTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-C---SSHH
T ss_pred HHHHHHHHHhHHH----HHHHHHHHHHHHH---hCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CCHH
Confidence 4556666677777 7666666554421 1111 112223334333344444445555555532 1 2222
Q ss_pred hhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 211 VQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
.-...+..+.+.|+.++|.++|=+.+
T Consensus 93 ----~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 93 ----HLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 23445566677777777777764443
No 381
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.18 E-value=4.1e+02 Score=25.44 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=19.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 043380 105 HAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSG 143 (246)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 143 (246)
+.+++-.|++++..+.+ . .|+...|..++..+...|
T Consensus 1296 ~~~~~g~~~k~l~k~~~-~--k~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIE-E--KRTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHTCHHHHHHHHHHHHH-H--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHcC
Confidence 45566666666666655 2 145555555555554444
No 382
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.85 E-value=3.1e+02 Score=21.91 Aligned_cols=154 Identities=6% Similarity=-0.007 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHH-h----CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhccCCCCCCCCC
Q 043380 19 VMNAVIEASREAQR---IDEAYQILESVE-K----GLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDNGQKCSSGGFH 90 (246)
Q Consensus 19 ~~~~li~~~~~~g~---~~~a~~~~~~~~-~----~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 90 (246)
.-..++...|..|+ ++.|.+.|+... . .++||.... +... + .+..++-..+++.....
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~-~-~~~~~~~~~l~~~y~~s---------- 264 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAV-G-AQSTEGWDFLYSKYQFS---------- 264 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHH-H-TTSHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EEee-e-eCCHHHHHHHHHHHhcC----------
Confidence 34466777778777 567888887754 2 255554321 1111 1 12233334455555543
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcC-ChhhhhhHHHHHHH----HHHHhhc
Q 043380 91 PDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNL-ILDRSTFTAMVDALLYSG-SIKVVGLYALCIFG----EIVKRVC 164 (246)
Q Consensus 91 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~-~~~~~~~~a~~~~~----~m~~~~~ 164 (246)
.+..--..++.+++...+.+...++++.... ..+ ++.. .. .++.+.+... -.+. |++.+. .+.+.
T Consensus 265 ~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~-~~~ir~qD-~~-~~~~~v~~n~~g~~~----aw~fl~~nw~~l~~~-- 335 (419)
T 3rjo_A 265 LSSTEKSQIEFALCRTQNKEKLQWLLDESFK-GDKIKTQE-FP-QILTLIGRNPVGYPL----AWQFLRKNWNKLVQK-- 335 (419)
T ss_dssp CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-TSSSCGGG-HH-HHHHHHHTSTTTHHH----HHHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHHHhC-CCCCchhH-HH-HHHHHHhcCcchHHH----HHHHHHHHHHHHHHH--
Confidence 4555677899999999999999999998887 443 4332 22 2344444322 1233 555544 34443
Q ss_pred CCCCCCcchhhHHHHHHHHHhc----CChhHHhhHHHhh
Q 043380 165 SNPGLWPKPHLYVSMMHELAAR----VDYDIVKSPYRRM 199 (246)
Q Consensus 165 ~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~ 199 (246)
+.+....+..+|.+.... .+.++.+..|+.-
T Consensus 336 ----~~~~~~~~~~~i~~~~~~~~t~~~l~e~~~Ff~~~ 370 (419)
T 3rjo_A 336 ----FELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSL 370 (419)
T ss_dssp ----HCTTCHHHHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred ----hCcCchhHHHHHHHHhhcCCCHHHHHHHHHHHHhC
Confidence 333446677777765543 3345566666544
No 383
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.56 E-value=3.5e+02 Score=22.45 Aligned_cols=99 Identities=7% Similarity=0.069 Sum_probs=68.4
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCC
Q 043380 88 GFHPDIFTYATLLMGFRHAKDLQSLLEIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNP 167 (246)
Q Consensus 88 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 167 (246)
|++--...|.--.+.+...|++++|-.+-..-.. |+--+..|.+-+-..-...|...- -+.+|..+.+.
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~sp----lL~YF~~Ll~~----- 424 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSP----LLQYFGILLDQ----- 424 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCH----HHHHHHHHHHH-----
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCH----HHHHHHHHhcc-----
Confidence 4444445566667778888999999888766544 566677777777666666677777 88888888887
Q ss_pred CCCcchhhHHHHHHHHHhcCChhHHhhHHHh
Q 043380 168 GLWPKPHLYVSMMHELAARVDYDIVKSPYRR 198 (246)
Q Consensus 168 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (246)
| +.+..----+++.-...|+.+..++.+.+
T Consensus 425 g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 425 G-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp S-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 3 34554444566666677777776666655
No 384
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=21.17 E-value=3e+02 Score=21.53 Aligned_cols=168 Identities=14% Similarity=0.003 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcch----HHHHHHHHHhccCCCCCCCCCccH
Q 043380 18 IVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDV----TMPFNEQLKDNGQKCSSGGFHPDI 93 (246)
Q Consensus 18 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~p~~ 93 (246)
.+|.++..-|.+.+++++|.+++-.- ...+.+.|.... +.-+++-..+. ++++|.
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~-------~~~~~~ 94 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQA-------GQRVDG 94 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCCCCH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHc-------CCCCCH
Confidence 34555666666666666666665331 111223333333 32333444444 566777
Q ss_pred HHHHHHHHHHHccCCHH-HHHHHH----HHHHhCCC--CCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCC
Q 043380 94 FTYATLLMGFRHAKDLQ-SLLEIV----FEMKSCCN--LILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSN 166 (246)
Q Consensus 94 ~~~~~ll~~~~~~~~~~-~a~~~~----~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 166 (246)
.....|+..+.....-+ .=..+. ..-.+ .| -.-|+.....+...|.+.+++.+ |..-| + .
T Consensus 95 ~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~----Ae~H~--i--l---- 161 (336)
T 3lpz_A 95 ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEA----AEKHL--V--L---- 161 (336)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHH----HHHHH--T--T----
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHH----HHHHH--H--h----
Confidence 77777777766554311 111122 22222 22 23356667778888888898888 87665 2 1
Q ss_pred CCCCcchhhHHHHHHHHHhcCChhHHhhHHHhhCCCCCCCCCchhhhHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043380 167 PGLWPKPHLYVSMMHELAARVDYDIVKSPYRRMWPDSTGTISPEVQEEAGHLLMEAALNDGQVDLALDKLSNTI 240 (246)
Q Consensus 167 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 240 (246)
|..+...++..|+.-+...+...++--+ ..-.+-.|...+++..|..+++...
T Consensus 162 -g~~~s~~~~a~mL~ew~~~~~~~e~dlf--------------------iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 162 -GTKESPEVLARMEYEWYKQDESHTAPLY--------------------CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -SCTTHHHHHHHHHHHHHHTSCGGGHHHH--------------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -cCCchHHHHHHHHHHHHHhcCCccHHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444556777777666555442221111 2223334555667777776665544
No 385
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=21.10 E-value=2e+02 Score=19.52 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=6.0
Q ss_pred hHHhhHHHhhC
Q 043380 190 DIVKSPYRRMW 200 (246)
Q Consensus 190 ~~a~~~~~~~~ 200 (246)
+++..++..+.
T Consensus 115 ~~~~~l~~~~d 125 (174)
T 2i7a_A 115 ELLHLVTLRYS 125 (174)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHc
Confidence 44555555554
No 386
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.92 E-value=1.4e+02 Score=23.21 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=50.6
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhhhhhHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH---HhcCChh
Q 043380 114 EIVFEMKSCCNLILDRSTFTAMVDALLYSGSIKVVGLYALCIFGEIVKRVCSNPGLWPKPHLYVSMMHEL---AARVDYD 190 (246)
Q Consensus 114 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~ 190 (246)
++++.+.+ .|+.|...++.-++..+++.=.++. +.++|+.+... |...-..+..+++..+ .-..+++
T Consensus 214 ~L~~hL~~-~~i~~~~~~~~W~ltlF~~~lp~~~----~lriWD~~l~e-----g~~~l~~valaiL~~~~~~Ll~~d~~ 283 (334)
T 2qq8_A 214 KLFAHFKK-NNLTPDIYLIDWIFTLYSKSLPLDL----ACRIWDVFCRD-----GEEFLFRTALGILKLFEDILTKMDFI 283 (334)
T ss_dssp HHHHHHHH-TTCCGGGTHHHHHHTTTTTTSCHHH----HHHHHHHHHHH-----CHHHHHHHHHHHHHHTHHHHHTCCHH
T ss_pred HHHHHHHH-cCCCccchHHHHHHHHhcccCCHHH----HHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 35666777 8899998888889998888888899 99999999887 4221111122222221 1234667
Q ss_pred HHhhHHHhhC
Q 043380 191 IVKSPYRRMW 200 (246)
Q Consensus 191 ~a~~~~~~~~ 200 (246)
+...+++.+.
T Consensus 284 ~il~~L~~lp 293 (334)
T 2qq8_A 284 HMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHHhCC
Confidence 7777776653
No 387
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.66 E-value=55 Score=21.24 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHh
Q 043380 107 KDLQSLLEIVFEMKSCCNLI-LDRSTFTAMVDALLY 141 (246)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~ 141 (246)
.++++|.+.+..|++ .-+. -.+..||.+|..+..
T Consensus 41 ~~y~ka~ecl~~~R~-~~i~~~ep~~yN~Fl~~Lk~ 75 (120)
T 1q2z_A 41 PYFMKSIDCIRAFRE-EAIKFSEEQRFNNFLKALQE 75 (120)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-HHHhccChHHHHHHHHHHHH
Confidence 478899999999987 3333 357789999887754
No 388
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.41 E-value=3.7e+02 Score=22.31 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=39.8
Q ss_pred HHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 043380 8 VNREHWKLNTIVMNAVIEASREAQRIDEAYQILESVEKGLEPDSLSYNILISACIKTKKLDVTMPFNEQLKDN 80 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 80 (246)
+.+.+++--...|---.+.+...|++++|-++-....+|+-.+..|.+.+-..=...|...--+.+|.-+.+.
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~ 424 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQ 424 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhcc
Confidence 3344444444445555556666666666666666666666666666655444333344455555555555554
No 389
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.41 E-value=4e+02 Score=25.51 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=54.0
Q ss_pred HHHHHHHHHHccC---------------CHHHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHhcCChhhhhhHHHHHHHH
Q 043380 95 TYATLLMGFRHAK---------------DLQSLLEIVFEMKSCCNLILDRSTFTAM-VDALLYSGSIKVVGLYALCIFGE 158 (246)
Q Consensus 95 ~~~~ll~~~~~~~---------------~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~~~~~~~~~~a~~~~~~ 158 (246)
.=+.|+.++++.| ..++..+.|.++.+ . +.++..-+..+ +..-...+++.. |++++..
T Consensus 1236 ~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k-~-~d~~d~k~~~~~~~~~~~~~~~g~----~~k~l~k 1309 (1354)
T 3lxu_X 1236 QKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIK-F-VDANDSKAIQFALWHAYAHGHYGR----MYKYVVK 1309 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTT-S-SCTTSTTTHHHHHHHHHHHTCHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh-h-cccCCceeehhHHHHHHHHHHHHH----HHHHHHH
Confidence 4677888887743 24556667777776 3 33332222223 333336899999 9999999
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHHhcCC
Q 043380 159 IVKRVCSNPGLWPKPHLYVSMMHELAARVD 188 (246)
Q Consensus 159 m~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 188 (246)
+.+. +|+...|..++..+...|-
T Consensus 1310 ~~~~-------k~~~~~~~~~~~~~~~l~w 1332 (1354)
T 3lxu_X 1310 LIEE-------KRTRDHFVELAAINGALGH 1332 (1354)
T ss_dssp HHHH-------TCCHHHHHHHHHHHHHHSC
T ss_pred HHhc-------cccHHHHHHHHHHHHHcCC
Confidence 9987 4788888888888766654
Done!