BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043381
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1
Length = 680
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 65 RVMGEMLLLPTGDVLIINGAKKGTAGWNFA-TDPNTTPVLYEPNDPINERFSELTPTSKP 123
R ++LP G I G ++G F + P TP +Y P + F + P S
Sbjct: 480 RTFHTSVVLPDGSTFITGGQRRGIP---FEDSTPVFTPEIYVPEQ---DTFYKQNPNSIV 533
Query: 124 RMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFA--SYRPS 181
R+ HS S++LPDG++ G G + F P Y S + RP
Sbjct: 534 RVYHSISLLLPDGRVFNGGGG-------LCGDCTTNHFDAQIFTPNYLYNSNGNLATRPK 586
Query: 182 IVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKEL 241
I ++ + VK G I + S++ + Y TH V+ QR + L L
Sbjct: 587 I-TRTSTQSVKVGGRITI-----STDSSISKASLIRYGT--ATHTVNTDQRRIPLT---L 635
Query: 242 IDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQ-VPSPGTWVQI 285
+ G + V P + +A P +++LFV+ VPS + +++
Sbjct: 636 TNNGGNSYSFQV--PSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
Length = 680
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 29/211 (13%)
Query: 65 RVMGEMLLLPTGDVLIINGAKKGTAGWNFA-TDPNTTPVLYEPNDPINERFSELTPTSKP 123
R ++LP G I G ++G F + P TP +Y P + F + P S
Sbjct: 480 RTFHTSVVLPDGSTFITGGQRRGIP---FEDSTPVFTPEIYVPEQ---DTFYKQNPNSIV 533
Query: 124 RMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFA--SYRPS 181
R+ HS S++LPDG++ G G + F P Y S + RP
Sbjct: 534 RVYHSISLLLPDGRVFNGGGG-------LCGDCTTNHFDAQIFTPNYLYNSNGNLATRPK 586
Query: 182 IVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKEL 241
I ++ + VK G I + S+ + Y TH V+ QR + L L
Sbjct: 587 I-TRTSTQSVKVGGRITI-----STDSSITKASLIRYGT--ATHTVNTDQRRIPLT---L 635
Query: 242 IDVGSGIFQVSVTAPPTAKIAPPSFYLLFVV 272
+ G + V P + +A P +++LFV+
Sbjct: 636 TNNGGNSYSFQV--PSDSGVALPGYWMLFVM 664
>sp|Q8CA72|GAN_MOUSE Gigaxonin OS=Mus musculus GN=Gan PE=1 SV=2
Length = 597
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 103 LYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELR 162
LY+PN + + EL P S PR+ H V+ +G + V G ++ L+SG KY +
Sbjct: 298 LYDPNRQL---WIELAPLSMPRINHG--VLSAEGFLFVLGGQDENKQTLSSGEKYDPDAN 352
Query: 163 IEKFYPP 169
PP
Sbjct: 353 TWTALPP 359
>sp|Q9H2C0|GAN_HUMAN Gigaxonin OS=Homo sapiens GN=GAN PE=1 SV=1
Length = 597
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 103 LYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELR 162
LY+PN + + EL P S PR+ H V+ +G + V G ++ L+SG KY +
Sbjct: 298 LYDPNRQL---WIELAPLSMPRINHG--VLSAEGFLFVFGGQDENKQTLSSGEKYDPDAN 352
Query: 163 IEKFYPP 169
PP
Sbjct: 353 TWTALPP 359
>sp|Q6Q7X9|KLH31_DANRE Kelch-like protein 31 OS=Danio rerio GN=klhl31 PE=2 SV=1
Length = 635
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 109 PINERFSELTPTSKPRMCHSTSVVLPDGKILVAG---SNPHSR 148
P + ++ P PR CH++SV+ DGKILV+G +N +SR
Sbjct: 442 PSSNQWQMKAPMEVPRCCHASSVI--DGKILVSGGYINNAYSR 482
>sp|P37367|ATA1_SYNY3 Cation-transporting ATPase pma1 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=pma1 PE=3 SV=2
Length = 905
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 66/170 (38%), Gaps = 24/170 (14%)
Query: 110 INERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNP---HSRYNLTSGSKYPTELRIEKF 166
I E +E S + + + VL DG+ L S +L SG K P +LR+ K
Sbjct: 104 IQEAKAEGAIASLAKAVTTEATVLRDGQNLRIPSQDLVIGDIVSLASGDKVPADLRLLKV 163
Query: 167 YPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHG 226
DES + V K +L E L + YA F T G
Sbjct: 164 RNLQVDESALTGEAVPVEK--------------AVELLPEETPLAERLNMAYAGSFVTFG 209
Query: 227 VSMGQRLLVLATKELIDVG----SGIFQVSVTAPPTAKIAPPSFYLLFVV 272
G +V+AT ++G S QVS+ P T K A S LL+V+
Sbjct: 210 QGTG---VVVATANATEMGQISQSMEKQVSLMTPLTRKFAKFSHTLLYVI 256
>sp|P22047|NCAP_PHV Nucleoprotein OS=Prospect Hill virus GN=N PE=3 SV=1
Length = 433
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 24 AKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIING 83
A+P G AG+ EF++++ R + N+ A +P + E L +GD + +
Sbjct: 249 AEPRPGQPAGEAEFLSSI----RAYLMNRQAVLDETHLPDIDALVE--LAASGDPTLPDS 302
Query: 84 AKKGTAGWNFATDPNTTP 101
+ A W FA P+ P
Sbjct: 303 LENPHAAWVFACAPDRCP 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,107,352
Number of Sequences: 539616
Number of extensions: 4944058
Number of successful extensions: 10709
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10700
Number of HSP's gapped (non-prelim): 11
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)