Query 043381
Match_columns 286
No_of_seqs 197 out of 758
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02851 Galactose_oxidase_C_te 100.0 8E-36 1.7E-40 237.6 11.8 99 174-286 1-101 (101)
2 PF09118 DUF1929: Domain of un 100.0 1.8E-35 3.9E-40 234.8 9.4 97 179-285 1-98 (98)
3 KOG4441 Proteins containing BT 99.7 2.4E-17 5.1E-22 166.8 13.0 124 14-173 379-503 (571)
4 KOG4441 Proteins containing BT 99.7 1E-16 2.2E-21 162.1 12.5 126 14-174 331-457 (571)
5 PHA02713 hypothetical protein; 99.6 4.5E-15 9.8E-20 149.8 14.5 128 14-170 350-489 (557)
6 PHA02713 hypothetical protein; 99.6 9.2E-15 2E-19 147.5 16.4 133 15-173 303-444 (557)
7 PHA02790 Kelch-like protein; P 99.6 4.7E-15 1E-19 147.0 13.5 111 14-171 361-472 (480)
8 PHA02790 Kelch-like protein; P 99.6 9E-14 1.9E-18 137.9 15.8 116 15-172 271-387 (480)
9 PHA03098 kelch-like protein; P 99.5 1.2E-12 2.5E-17 130.6 16.4 124 15-173 294-418 (534)
10 PHA03098 kelch-like protein; P 99.5 1.4E-12 3.1E-17 129.9 16.2 127 14-173 341-468 (534)
11 TIGR03548 mutarot_permut cycli 99.4 2.8E-12 6.1E-17 120.2 14.3 120 15-172 72-197 (323)
12 PLN02153 epithiospecifier prot 99.4 4.1E-12 8.9E-17 120.1 14.9 135 15-173 85-229 (341)
13 TIGR03547 muta_rot_YjhT mutatr 99.4 8.8E-12 1.9E-16 117.6 15.3 110 14-145 16-128 (346)
14 TIGR03547 muta_rot_YjhT mutatr 99.4 3.8E-12 8.3E-17 120.1 12.3 118 14-147 199-333 (346)
15 PLN02153 epithiospecifier prot 99.3 4E-11 8.6E-16 113.4 14.8 130 14-172 31-170 (341)
16 PRK14131 N-acetylneuraminic ac 99.3 1.5E-11 3.2E-16 118.2 11.6 132 14-169 220-368 (376)
17 PLN02193 nitrile-specifier pro 99.3 7E-11 1.5E-15 117.0 15.5 122 14-173 227-355 (470)
18 TIGR03548 mutarot_permut cycli 99.2 9.5E-11 2.1E-15 109.9 13.5 133 15-173 13-151 (323)
19 PRK14131 N-acetylneuraminic ac 99.2 5E-10 1.1E-14 107.6 15.4 110 14-145 37-149 (376)
20 PLN02193 nitrile-specifier pro 99.1 7.9E-10 1.7E-14 109.5 14.7 124 14-172 174-305 (470)
21 PF13964 Kelch_6: Kelch motif 98.8 1.2E-08 2.6E-13 70.4 6.0 50 64-124 1-50 (50)
22 PF07250 Glyoxal_oxid_N: Glyox 98.8 4E-08 8.8E-13 89.9 10.1 106 14-144 76-189 (243)
23 PF07250 Glyoxal_oxid_N: Glyox 98.7 5.8E-08 1.2E-12 88.9 9.5 93 42-147 46-140 (243)
24 smart00612 Kelch Kelch domain. 98.5 1.7E-07 3.8E-12 62.3 4.9 45 77-132 1-45 (47)
25 PF01344 Kelch_1: Kelch motif; 98.4 1.9E-07 4.1E-12 63.2 2.1 47 64-121 1-47 (47)
26 KOG0379 Kelch repeat-containin 98.3 4.4E-06 9.6E-11 83.4 11.3 106 15-145 122-234 (482)
27 PF13418 Kelch_4: Galactose ox 98.2 1.2E-06 2.6E-11 59.9 3.1 48 64-121 1-48 (49)
28 KOG0379 Kelch repeat-containin 98.1 1.6E-05 3.5E-10 79.4 10.9 108 15-147 173-287 (482)
29 PF07646 Kelch_2: Kelch motif; 98.0 1.2E-05 2.5E-10 55.3 5.4 49 64-121 1-49 (49)
30 PF13415 Kelch_3: Galactose ox 97.8 3.8E-05 8.3E-10 52.7 5.3 48 75-131 1-48 (49)
31 KOG4693 Uncharacterized conser 97.7 0.0002 4.3E-09 66.7 9.3 75 61-148 75-152 (392)
32 smart00612 Kelch Kelch domain. 97.7 5.9E-05 1.3E-09 49.9 4.1 44 17-73 1-45 (47)
33 KOG4693 Uncharacterized conser 97.5 0.00028 6.1E-09 65.7 6.8 110 14-147 87-203 (392)
34 PF13964 Kelch_6: Kelch motif 97.4 0.00031 6.7E-09 48.2 4.5 40 14-65 10-50 (50)
35 PF13415 Kelch_3: Galactose ox 97.3 0.00072 1.6E-08 46.3 5.3 46 16-72 2-48 (49)
36 PLN02772 guanylate kinase 97.3 0.00097 2.1E-08 65.2 8.1 71 62-144 22-95 (398)
37 KOG1230 Protein containing rep 97.2 0.0033 7.1E-08 61.5 11.0 113 15-144 78-196 (521)
38 KOG1230 Protein containing rep 97.2 0.002 4.4E-08 63.0 9.3 116 16-147 133-254 (521)
39 PF01344 Kelch_1: Kelch motif; 96.8 0.0016 3.5E-08 43.6 3.4 38 123-171 1-38 (47)
40 COG3055 Uncharacterized protei 96.7 0.0072 1.6E-07 58.1 8.4 96 44-147 60-158 (381)
41 PF07646 Kelch_2: Kelch motif; 96.3 0.0096 2.1E-07 40.6 4.9 42 123-173 1-42 (49)
42 PF13418 Kelch_4: Galactose ox 96.1 0.0049 1.1E-07 41.8 2.6 40 123-172 1-40 (49)
43 COG3055 Uncharacterized protei 95.3 0.054 1.2E-06 52.3 7.3 121 14-147 91-240 (381)
44 KOG4152 Host cell transcriptio 95.0 0.041 8.9E-07 55.5 5.4 103 16-147 43-158 (830)
45 PF13854 Kelch_5: Kelch motif 94.1 0.055 1.2E-06 35.9 2.8 24 61-85 1-24 (42)
46 PLN02772 guanylate kinase 94.0 0.14 2.9E-06 50.4 6.6 60 14-85 33-96 (398)
47 KOG4152 Host cell transcriptio 92.5 0.23 4.9E-06 50.3 5.5 76 54-144 17-100 (830)
48 PF13854 Kelch_5: Kelch motif 91.2 0.67 1.4E-05 30.6 5.1 24 121-146 2-25 (42)
49 KOG0271 Notchless-like WD40 re 78.0 4.5 9.8E-05 39.8 5.5 57 72-146 123-179 (480)
50 PF13088 BNR_2: BNR repeat-lik 72.5 4.9 0.00011 36.1 4.1 80 50-140 190-275 (275)
51 cd02849 CGTase_C_term Cgtase ( 71.3 43 0.00092 25.4 8.6 75 179-281 2-77 (81)
52 PF15418 DUF4625: Domain of un 70.0 58 0.0013 27.1 9.6 91 177-273 12-115 (132)
53 PRK13684 Ycf48-like protein; P 68.7 29 0.00063 33.0 8.6 74 54-144 204-279 (334)
54 PRK13684 Ycf48-like protein; P 68.0 32 0.0007 32.7 8.7 81 46-144 154-234 (334)
55 TIGR02608 delta_60_rpt delta-6 66.7 9.6 0.00021 27.1 3.7 33 130-170 6-38 (55)
56 KOG0286 G-protein beta subunit 64.0 54 0.0012 31.4 9.0 92 14-145 107-208 (343)
57 KOG2437 Muskelin [Signal trans 63.7 9.9 0.00021 38.8 4.4 114 15-146 272-396 (723)
58 COG3490 Uncharacterized protei 61.8 50 0.0011 31.7 8.4 86 65-170 114-203 (366)
59 PF13088 BNR_2: BNR repeat-lik 58.8 12 0.00026 33.6 3.7 85 50-144 85-178 (275)
60 PF13540 RCC1_2: Regulator of 57.1 11 0.00024 23.0 2.3 21 125-146 8-28 (30)
61 PF10342 GPI-anchored: Ser-Thr 55.7 83 0.0018 23.3 9.0 73 188-273 6-78 (93)
62 PF03089 RAG2: Recombination a 55.7 2E+02 0.0043 27.7 13.9 84 60-148 83-177 (337)
63 PF14870 PSII_BNR: Photosynthe 54.9 1E+02 0.0022 29.2 9.5 104 54-172 176-290 (302)
64 cd00260 Sialidase Sialidases o 53.8 93 0.002 29.1 9.1 68 69-145 150-218 (351)
65 PF12768 Rax2: Cortical protei 53.4 96 0.0021 29.1 9.0 90 41-144 15-110 (281)
66 KOG1427 Uncharacterized conser 52.9 59 0.0013 31.4 7.3 188 14-240 18-215 (443)
67 COG4257 Vgb Streptogramin lyas 51.0 1.1E+02 0.0024 29.3 8.8 86 41-144 82-167 (353)
68 PF08450 SGL: SMP-30/Gluconola 49.7 81 0.0018 27.8 7.6 81 43-146 23-107 (246)
69 PRK11028 6-phosphogluconolacto 48.7 2.2E+02 0.0047 26.2 11.5 85 44-143 59-144 (330)
70 PF10670 DUF4198: Domain of un 44.7 1.8E+02 0.0039 24.9 8.9 75 181-273 137-211 (215)
71 PTZ00420 coronin; Provisional 40.1 4.2E+02 0.0092 27.5 11.9 52 42-109 148-199 (568)
72 KOG0278 Serine/threonine kinas 39.7 61 0.0013 30.6 5.1 74 69-166 189-262 (334)
73 PF00868 Transglut_N: Transglu 37.5 2.2E+02 0.0047 23.0 9.1 22 248-272 94-115 (118)
74 PRK11138 outer membrane biogen 36.8 2.5E+02 0.0053 26.8 9.2 78 44-143 306-384 (394)
75 PF10633 NPCBM_assoc: NPCBM-as 36.0 1.5E+02 0.0032 21.7 6.0 70 192-272 2-74 (78)
76 PTZ00421 coronin; Provisional 33.3 5.2E+02 0.011 26.1 12.4 26 71-109 175-200 (493)
77 PTZ00421 coronin; Provisional 32.1 3.3E+02 0.0071 27.6 9.5 61 71-143 218-278 (493)
78 PF08662 eIF2A: Eukaryotic tra 31.1 1.2E+02 0.0026 26.3 5.5 57 71-144 107-163 (194)
79 PLN00033 photosystem II stabil 30.2 3.7E+02 0.008 26.5 9.3 72 56-145 272-348 (398)
80 PF03443 Glyco_hydro_61: Glyco 29.8 2.6E+02 0.0056 25.2 7.6 79 190-271 64-155 (218)
81 PLN00181 protein SPA1-RELATED; 29.4 2.4E+02 0.0053 29.8 8.5 63 71-146 667-730 (793)
82 KOG0639 Transducin-like enhanc 28.9 1.3E+02 0.0028 31.1 5.8 23 123-145 464-486 (705)
83 PRK09774 fec operon regulator 28.6 1.4E+02 0.0031 28.1 5.9 69 129-202 119-189 (319)
84 PF07433 DUF1513: Protein of u 27.5 3.6E+02 0.0078 25.8 8.4 87 44-142 30-116 (305)
85 PF13895 Ig_2: Immunoglobulin 27.4 2.1E+02 0.0045 19.6 5.4 37 179-221 1-37 (80)
86 COG5184 ATS1 Alpha-tubulin sup 26.8 1.7E+02 0.0037 29.7 6.2 75 69-148 188-262 (476)
87 PTZ00420 coronin; Provisional 26.4 3E+02 0.0065 28.5 8.2 26 74-108 224-249 (568)
88 KOG0265 U5 snRNP-specific prot 25.7 1.5E+02 0.0032 28.6 5.3 55 71-146 54-112 (338)
89 PF03067 Chitin_bind_3: Chitin 25.4 2.5E+02 0.0054 24.0 6.5 76 188-273 78-166 (183)
90 PRK11028 6-phosphogluconolacto 25.1 5.3E+02 0.012 23.5 10.6 85 42-143 12-98 (330)
91 PF07705 CARDB: CARDB; InterP 25.0 2.8E+02 0.006 20.3 7.7 70 188-273 12-83 (101)
92 PF13360 PQQ_2: PQQ-like domai 24.7 3.6E+02 0.0078 22.9 7.5 89 43-145 87-183 (238)
93 KOG0639 Transducin-like enhanc 24.5 1.5E+02 0.0033 30.5 5.5 51 46-109 444-497 (705)
94 PF09917 DUF2147: Uncharacteri 23.9 91 0.002 24.8 3.2 29 101-143 72-100 (114)
95 cd05740 Ig_CEACAM_D4 Fourth im 23.9 2.7E+02 0.0059 20.8 5.8 86 179-285 1-90 (91)
96 KOG0271 Notchless-like WD40 re 23.8 4E+02 0.0086 26.7 8.0 64 14-109 125-189 (480)
97 PF10282 Lactonase: Lactonase, 23.2 5.9E+02 0.013 23.8 9.1 83 41-143 213-310 (345)
98 TIGR02658 TTQ_MADH_Hv methylam 23.0 7E+02 0.015 24.2 11.5 111 41-182 76-201 (352)
99 cd00604 IPT_CGTD IPT domain (d 22.8 3.4E+02 0.0073 20.4 9.0 76 180-283 1-77 (81)
100 PF12768 Rax2: Cortical protei 22.7 1.5E+02 0.0032 27.9 4.8 40 98-143 15-55 (281)
101 smart00155 PLDc Phospholipase 22.4 94 0.002 18.3 2.3 22 64-85 2-23 (28)
102 KOG0286 G-protein beta subunit 22.4 4.8E+02 0.01 25.2 8.0 74 57-144 91-165 (343)
103 KOG0266 WD40 repeat-containing 22.4 7.6E+02 0.016 24.3 10.6 59 68-144 250-308 (456)
104 PF01436 NHL: NHL repeat; Int 22.2 1.1E+02 0.0024 18.1 2.6 16 127-143 5-20 (28)
105 TIGR03866 PQQ_ABC_repeats PQQ- 22.0 5.2E+02 0.011 22.3 12.6 55 69-143 35-92 (300)
106 TIGR03437 Soli_cterm Solibacte 21.5 2.2E+02 0.0047 25.8 5.4 37 247-286 179-215 (215)
107 PF04234 CopC: CopC domain; I 20.8 1.1E+02 0.0024 23.5 3.1 70 195-282 20-92 (97)
108 TIGR03300 assembly_YfgL outer 20.7 6.3E+02 0.014 23.6 8.8 11 134-144 360-370 (377)
109 PF07679 I-set: Immunoglobulin 20.6 2.7E+02 0.0058 19.9 5.0 39 180-222 1-39 (90)
110 PF14269 Arylsulfotran_2: Aryl 20.5 6.2E+02 0.013 23.7 8.6 98 41-144 164-279 (299)
111 KOG1428 Inhibitor of type V ad 20.2 3.6E+02 0.0078 32.0 7.5 71 67-147 777-849 (3738)
112 PF14870 PSII_BNR: Photosynthe 20.1 5E+02 0.011 24.6 7.8 81 44-142 124-204 (302)
No 1
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=8e-36 Score=237.63 Aligned_cols=99 Identities=26% Similarity=0.326 Sum_probs=88.6
Q ss_pred CCCCCCCceeecCCC-ceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEE
Q 043381 174 SFASYRPSIVSKFKG-KMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVS 252 (286)
Q Consensus 174 ~~~~~RP~i~~~~~p-~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~ 252 (286)
|+++.||+|+++ | .+++||++|+|+++. .+.+|+|+|++|+||++|||||+|.|+++. ..+ .+++
T Consensus 1 g~~a~RP~I~~~--p~~~i~yG~~f~v~~~~-------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~--~~~---~~~~ 66 (101)
T cd02851 1 GTLASRPVITSA--STQTAKVGDTITVSTDS-------PISSASLVRYGSATHTVNTDQRRIPLTLFS--VGG---NSYS 66 (101)
T ss_pred CCCCCCCeeccC--CccccccCCEEEEEEec-------cceEEEEEecccccccccCCccEEEeeeEe--cCC---CEEE
Confidence 356799999999 8 899999999999972 489999999999999999999999999875 222 4677
Q ss_pred EEcCCCCCcCCCcceEEEEEc-CCCCCccEEEEeC
Q 043381 253 VTAPPTAKIAPPSFYLLFVVY-RQVPSPGTWVQIG 286 (286)
Q Consensus 253 v~~P~~~~vappG~YmLFv~~-~GvPS~a~~V~i~ 286 (286)
+++|+|++|||||||||||++ +||||+|+||+|+
T Consensus 67 v~~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 67 VQIPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred EEcCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 888999999999999999995 9999999999985
No 2
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=100.00 E-value=1.8e-35 Score=234.79 Aligned_cols=97 Identities=42% Similarity=0.757 Sum_probs=67.9
Q ss_pred CCceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEEEEcCCC
Q 043381 179 RPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPT 258 (286)
Q Consensus 179 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~ 258 (286)
||+|+++ |+.++||++|+|+++.+. ..++.+|+|+|+||+|||+|||||+|+|++.. ..+ ++++|++|+|
T Consensus 1 RP~i~~~--p~~i~yg~~~tv~~~~~~---~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~--~~~---~~~~v~~P~~ 70 (98)
T PF09118_consen 1 RPVITSA--PTTIKYGQTFTVTVTVPS---AASIVKVSLVRPGFVTHSFNMGQRMVELEFVS--GGG---NTVTVTAPPN 70 (98)
T ss_dssp ---EEES---SEEETT-EEEEEE--SS------ESEEEEEE--EEETTB-SS-EEEEE-EEE--ESS---SEEEEE--S-
T ss_pred CCccccC--CCeEecCCEEEEEEECCC---ccceEEEEEEeCCcccccccCCCCEEeeeeec--CCC---CEEEEECCCC
Confidence 9999998 999999999999998654 24789999999999999999999999999943 233 6899999999
Q ss_pred CCcCCCcceEEEEEc-CCCCCccEEEEe
Q 043381 259 AKIAPPSFYLLFVVY-RQVPSPGTWVQI 285 (286)
Q Consensus 259 ~~vappG~YmLFv~~-~GvPS~a~~V~i 285 (286)
++|+|||||||||++ +||||+|+||+|
T Consensus 71 ~~vaPPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 71 PNVAPPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp TTTS-SEEEEEEEEETTS-B---EEEEE
T ss_pred CccCCCcCEEEEEEcCCCcccccEEEEC
Confidence 999999999999999 999999999997
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=166.77 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=105.9
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWN 92 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~ 92 (286)
-.++|+++||.+ +. ..++++|+||+. .++|+.+ +|+.+|..++++++ +|+|||+||.+. .
T Consensus 379 l~g~iYavGG~d-g~----------~~l~svE~YDp~--~~~W~~va~m~~~r~~~gv~~~-~g~iYi~GG~~~-~---- 439 (571)
T KOG4441|consen 379 LDGKLYAVGGFD-GE----------KSLNSVECYDPV--TNKWTPVAPMLTRRSGHGVAVL-GGKLYIIGGGDG-S---- 439 (571)
T ss_pred ECCEEEEEeccc-cc----------cccccEEEecCC--CCcccccCCCCcceeeeEEEEE-CCEEEEEcCcCC-C----
Confidence 468999999997 22 467899999998 5999999 99999999987777 999999999762 1
Q ss_pred CCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCCC
Q 043381 93 FATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFD 172 (286)
Q Consensus 93 ~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl~ 172 (286)
.+.+.+.|+|||.++ +|+.+++|..+|.+|++|++ +|+||++||..... ...+||+|+|...-
T Consensus 440 --~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~----------~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 440 --SNCLNSVECYDPETN---TWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTS----------ALSSVERYDPETNQ 502 (571)
T ss_pred --ccccceEEEEcCCCC---ceeecCCcccccccceEEEE--CCEEEEECCccCCC----------ccceEEEEcCCCCc
Confidence 236788999999999 99999999999999999999 99999999976621 13469999999965
Q ss_pred C
Q 043381 173 E 173 (286)
Q Consensus 173 ~ 173 (286)
+
T Consensus 503 W 503 (571)
T KOG4441|consen 503 W 503 (571)
T ss_pred e
Confidence 4
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.70 E-value=1e-16 Score=162.12 Aligned_cols=126 Identities=18% Similarity=0.328 Sum_probs=107.1
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWN 92 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~ 92 (286)
.+++|+++||.+.+ ...++++++||+.. ++|+.. +|+.+|..+..++| +|+||++||.+ |.
T Consensus 331 ~~~~lYv~GG~~~~----------~~~l~~ve~YD~~~--~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~d-g~---- 392 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSG----------SDRLSSVERYDPRT--NQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFD-GE---- 392 (571)
T ss_pred ECCEEEEEccccCC----------CcccceEEEecCCC--CceeccCCccCccccceeEEE-CCEEEEEeccc-cc----
Confidence 46789999998721 24789999999974 789998 99999999997888 99999999987 32
Q ss_pred CCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCCC
Q 043381 93 FATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFD 172 (286)
Q Consensus 93 ~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl~ 172 (286)
....+.|.|||.++ +|+.+++|..+|..|+++++ +|+||++||.++... ...++|+|+|..-.
T Consensus 393 ---~~l~svE~YDp~~~---~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~---------~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 393 ---KSLNSVECYDPVTN---KWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSN---------CLNSVECYDPETNT 455 (571)
T ss_pred ---cccccEEEecCCCC---cccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCcc---------ccceEEEEcCCCCc
Confidence 34558999999999 99999999999999999999 999999999776641 13489999999976
Q ss_pred CC
Q 043381 173 ES 174 (286)
Q Consensus 173 ~~ 174 (286)
+.
T Consensus 456 W~ 457 (571)
T KOG4441|consen 456 WT 457 (571)
T ss_pred ee
Confidence 54
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.62 E-value=4.5e-15 Score=149.78 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=99.9
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWN 92 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~ 92 (286)
.+++|+++||.+.. ..++++++||+. .++|+.. +|+.+|..+.++++ +|+|||+||.+. ...|.
T Consensus 350 ~~g~IYviGG~~~~-----------~~~~sve~Ydp~--~~~W~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~-~~~~~ 414 (557)
T PHA02713 350 IDDTIYAIGGQNGT-----------NVERTIECYTMG--DDKWKMLPDMPIALSSYGMCVL-DQYIYIIGGRTE-HIDYT 414 (557)
T ss_pred ECCEEEEECCcCCC-----------CCCceEEEEECC--CCeEEECCCCCcccccccEEEE-CCEEEEEeCCCc-ccccc
Confidence 47899999997521 246789999997 4899998 99999999988877 999999999752 11110
Q ss_pred -----------CCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCccc
Q 043381 93 -----------FATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTEL 161 (286)
Q Consensus 93 -----------~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~ 161 (286)
.......+.|.|||.++ +|+.+++|..+|..|+.|++ +|+|||+||...... . ..
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~-------~--~~ 480 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKN-------V--KT 480 (557)
T ss_pred cccccccccccccccccceEEEECCCCC---eEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCc-------c--ce
Confidence 00112456899999999 99999999999999999988 999999999643210 1 23
Q ss_pred EEEEEeCCC
Q 043381 162 RIEKFYPPY 170 (286)
Q Consensus 162 ~vE~y~Ppy 170 (286)
.+|+|+|..
T Consensus 481 ~ve~Ydp~~ 489 (557)
T PHA02713 481 CIFRYNTNT 489 (557)
T ss_pred eEEEecCCC
Confidence 589999998
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.62 E-value=9.2e-15 Score=147.53 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=100.5
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCccC
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNF 93 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~ 93 (286)
+++|+++||...+. ..++++++||+. +++|+.. +|+.+|..+.++.+ +|+||++||.+ +.
T Consensus 303 ~~~IYviGG~~~~~----------~~~~~v~~Yd~~--~n~W~~~~~m~~~R~~~~~~~~-~g~IYviGG~~-~~----- 363 (557)
T PHA02713 303 DNEIIIAGGYNFNN----------PSLNKVYKINIE--NKIHVELPPMIKNRCRFSLAVI-DDTIYAIGGQN-GT----- 363 (557)
T ss_pred CCEEEEEcCCCCCC----------CccceEEEEECC--CCeEeeCCCCcchhhceeEEEE-CCEEEEECCcC-CC-----
Confidence 67899999974111 246889999987 4889988 99999999987777 99999999975 21
Q ss_pred CCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCC---C-----CCCCcccEEEE
Q 043381 94 ATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTS---G-----SKYPTELRIEK 165 (286)
Q Consensus 94 ~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~---~-----~~~p~~~~vE~ 165 (286)
....+.|+|||.++ +|+.+++|+.+|..|+.+++ +|+|||.||.......... + .......++|+
T Consensus 364 --~~~~sve~Ydp~~~---~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ 436 (557)
T PHA02713 364 --NVERTIECYTMGDD---KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIR 436 (557)
T ss_pred --CCCceEEEEECCCC---eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEE
Confidence 12457899999999 99999999999999998887 9999999996532100000 0 00001347999
Q ss_pred EeCCCCCC
Q 043381 166 FYPPYFDE 173 (286)
Q Consensus 166 y~Ppyl~~ 173 (286)
|+|..--+
T Consensus 437 YDP~td~W 444 (557)
T PHA02713 437 YDTVNNIW 444 (557)
T ss_pred ECCCCCeE
Confidence 99998644
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=99.61 E-value=4.7e-15 Score=147.00 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=93.2
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWN 92 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~ 92 (286)
.+++|+++||.. . ..+++++|||. .++|+.. +|+.+|..+.++++ +|+|||+||.
T Consensus 361 ~~g~IYviGG~~--~-----------~~~~ve~ydp~--~~~W~~~~~m~~~r~~~~~~~~-~~~IYv~GG~-------- 416 (480)
T PHA02790 361 INNVIYVIGGHS--E-----------TDTTTEYLLPN--HDQWQFGPSTYYPHYKSCALVF-GRRLFLVGRN-------- 416 (480)
T ss_pred ECCEEEEecCcC--C-----------CCccEEEEeCC--CCEEEeCCCCCCccccceEEEE-CCEEEEECCc--------
Confidence 478999999974 1 12578999987 5899998 99999999987777 9999999983
Q ss_pred CCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCC
Q 043381 93 FATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYF 171 (286)
Q Consensus 93 ~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl 171 (286)
.|+|||+++ +|+.+++|+.+|..|+.+++ +|+|||+||.....+ ...+|+|+|..-
T Consensus 417 --------~e~ydp~~~---~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~----------~~~ve~Yd~~~~ 472 (480)
T PHA02790 417 --------AEFYCESSN---TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSY----------IDTIEVYNNRTY 472 (480)
T ss_pred --------eEEecCCCC---cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcc----------cceEEEEECCCC
Confidence 389999999 99999999999999998888 999999999643211 237999999863
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=99.55 E-value=9e-14 Score=137.88 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=95.2
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCccC
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNF 93 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~ 93 (286)
.++|+++||.+. . ..++++++||+. .++|... +|+.+|..+.++.+ ||+||++||...
T Consensus 271 ~~~lyviGG~~~-~----------~~~~~v~~Ydp~--~~~W~~~~~m~~~r~~~~~v~~-~~~iYviGG~~~------- 329 (480)
T PHA02790 271 GEVVYLIGGWMN-N----------EIHNNAIAVNYI--SNNWIPIPPMNSPRLYASGVPA-NNKLYVVGGLPN------- 329 (480)
T ss_pred CCEEEEEcCCCC-C----------CcCCeEEEEECC--CCEEEECCCCCchhhcceEEEE-CCEEEEECCcCC-------
Confidence 457899999752 1 246789999997 4889988 99999999987776 999999999641
Q ss_pred CCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCCC
Q 043381 94 ATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFD 172 (286)
Q Consensus 94 ~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl~ 172 (286)
..+.|.|||.++ +|+.+++|+.+|..|+.+++ +|+|||+||.... ...+|+|+|..-.
T Consensus 330 ----~~sve~ydp~~n---~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~------------~~~ve~ydp~~~~ 387 (480)
T PHA02790 330 ----PTSVERWFHGDA---AWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSET------------DTTTEYLLPNHDQ 387 (480)
T ss_pred ----CCceEEEECCCC---eEEECCCCCCCCcccEEEEE--CCEEEEecCcCCC------------CccEEEEeCCCCE
Confidence 125799999999 99999999999999998888 9999999995321 1369999998643
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.47 E-value=1.2e-12 Score=130.58 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=98.0
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCccC
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNF 93 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~ 93 (286)
.++|+++||..... ..++++.+||+. +++|+.. +|+.+|..+.++.+ +|+|||+||...+
T Consensus 294 ~~~lyv~GG~~~~~----------~~~~~v~~yd~~--~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~------ 354 (534)
T PHA03098 294 NNVIYFIGGMNKNN----------LSVNSVVSYDTK--TKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNS------ 354 (534)
T ss_pred CCEEEEECCCcCCC----------CeeccEEEEeCC--CCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCC------
Confidence 57899999986211 235678899987 5899987 99999999987777 9999999997521
Q ss_pred CCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCCCC
Q 043381 94 ATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDE 173 (286)
Q Consensus 94 ~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl~~ 173 (286)
....+.+.|||.++ +|+.+++|+.+|..|+++++ +|+|||.||...... . ...+|+|+|...-+
T Consensus 355 --~~~~~v~~yd~~~~---~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~-------~--~~~v~~yd~~t~~W 418 (534)
T PHA03098 355 --ISLNTVESWKPGES---KWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDE-------L--LKTVECFSLNTNKW 418 (534)
T ss_pred --EecceEEEEcCCCC---ceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCc-------c--cceEEEEeCCCCee
Confidence 23446799999999 99999999999999988877 999999999543321 0 23799999987543
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.46 E-value=1.4e-12 Score=129.90 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=99.3
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWN 92 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~ 92 (286)
.+++|+++||...+ ..++++++||+. .++|+.. +|+.+|..++++.+ +|+|||+||...+.
T Consensus 341 ~~~~lyv~GG~~~~-----------~~~~~v~~yd~~--~~~W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~---- 402 (534)
T PHA03098 341 FNNRIYVIGGIYNS-----------ISLNTVESWKPG--ESKWREEPPLIFPRYNPCVVNV-NNLIYVIGGISKND---- 402 (534)
T ss_pred ECCEEEEEeCCCCC-----------EecceEEEEcCC--CCceeeCCCcCcCCccceEEEE-CCEEEEECCcCCCC----
Confidence 36899999997511 356789999987 5899998 99999999987766 99999999965211
Q ss_pred CCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCCC
Q 043381 93 FATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFD 172 (286)
Q Consensus 93 ~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl~ 172 (286)
....+.+.|||.++ +|+.+++++.+|..|+++++ +++|||.||....... .. ...+|+|+|..--
T Consensus 403 ---~~~~~v~~yd~~t~---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~----~~---~~~v~~yd~~~~~ 467 (534)
T PHA03098 403 ---ELLKTVECFSLNTN---KWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNI----KV---YNIVESYNPVTNK 467 (534)
T ss_pred ---cccceEEEEeCCCC---eeeecCCCCccccCceEEEE--CCEEEEECCccCCCCC----cc---cceEEEecCCCCc
Confidence 22456799999999 99999999999999987776 9999999996543210 01 1259999998754
Q ss_pred C
Q 043381 173 E 173 (286)
Q Consensus 173 ~ 173 (286)
+
T Consensus 468 W 468 (534)
T PHA03098 468 W 468 (534)
T ss_pred e
Confidence 3
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.42 E-value=2.8e-12 Score=120.21 Aligned_cols=120 Identities=16% Similarity=0.255 Sum_probs=92.7
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCe----Eee-cCCCCccccceEEeCCCcEEEEcCccCCCC
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATW----QRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTA 89 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W----~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~a 89 (286)
..+|+++||.... ..++++++||+.. .+| +.. +||.+|..|.++++ +|+|||+||...+
T Consensus 72 ~~~lyviGG~~~~-----------~~~~~v~~~d~~~--~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~-- 135 (323)
T TIGR03548 72 ENGIYYIGGSNSS-----------ERFSSVYRITLDE--SKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNG-- 135 (323)
T ss_pred CCEEEEEcCCCCC-----------CCceeEEEEEEcC--CceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCC--
Confidence 5789999997521 2467899999974 566 555 89999998887776 9999999996422
Q ss_pred CccCCCCCCCccEEecCCCCCCCceEEcCCCC-CCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeC
Q 043381 90 GWNFATDPNTTPVLYEPNDPINERFSELTPTS-KPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYP 168 (286)
Q Consensus 90 g~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~-~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~P 168 (286)
....+.++|||.++ +|+.+++|+ .+|..|+.+++ +++|||.||..... ..++|+|+|
T Consensus 136 ------~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~--~~~iYv~GG~~~~~-----------~~~~~~yd~ 193 (323)
T TIGR03548 136 ------KPSNKSYLFNLETQ---EWFELPDFPGEPRVQPVCVKL--QNELYVFGGGSNIA-----------YTDGYKYSP 193 (323)
T ss_pred ------ccCceEEEEcCCCC---CeeECCCCCCCCCCcceEEEE--CCEEEEEcCCCCcc-----------ccceEEEec
Confidence 12346789999999 999999987 48888877666 89999999964321 125799999
Q ss_pred CCCC
Q 043381 169 PYFD 172 (286)
Q Consensus 169 pyl~ 172 (286)
..--
T Consensus 194 ~~~~ 197 (323)
T TIGR03548 194 KKNQ 197 (323)
T ss_pred CCCe
Confidence 9754
No 12
>PLN02153 epithiospecifier protein
Probab=99.41 E-value=4.1e-12 Score=120.08 Aligned_cols=135 Identities=22% Similarity=0.284 Sum_probs=96.7
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cC-----CCCccccceEEeCCCcEEEEcCccCCC
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MM-----PSPRVMGEMLLLPTGDVLIINGAKKGT 88 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M-----~~~R~~~~~v~LpdG~VlvvGG~~~g~ 88 (286)
.++|+++||.... ..+++.++||+. +++|+.. +| |.+|..|.++++ +++|||+||...+
T Consensus 85 ~~~iyv~GG~~~~-----------~~~~~v~~yd~~--t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~- 149 (341)
T PLN02153 85 GTKLYIFGGRDEK-----------REFSDFYSYDTV--KNEWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKG- 149 (341)
T ss_pred CCEEEEECCCCCC-----------CccCcEEEEECC--CCEEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCC-
Confidence 6799999997521 235788999987 5899976 77 889999987776 9999999998632
Q ss_pred CCccCCCCCCCccEEecCCCCCCCceEEcCCCC---CCCccceeeEEcCCCcEEEeCCCCCCCcccCCC-CCCCcccEEE
Q 043381 89 AGWNFATDPNTTPVLYEPNDPINERFSELTPTS---KPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSG-SKYPTELRIE 164 (286)
Q Consensus 89 ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~---~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~-~~~p~~~~vE 164 (286)
+.........+.++|||+++ +|+.++++. .+|..|+.+++ +|+|||.||...... . +| ..+ ....+|
T Consensus 150 -~~~~~~~~~~~v~~yd~~~~---~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~-~-gG~~~~-~~~~v~ 220 (341)
T PLN02153 150 -GLMKTPERFRTIEAYNIADG---KWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSIL-P-GGKSDY-ESNAVQ 220 (341)
T ss_pred -CccCCCcccceEEEEECCCC---eEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccc-c-CCccce-ecCceE
Confidence 11111112345789999999 999998875 78999987776 999999998643210 0 00 001 123699
Q ss_pred EEeCCCCCC
Q 043381 165 KFYPPYFDE 173 (286)
Q Consensus 165 ~y~Ppyl~~ 173 (286)
+|+|.....
T Consensus 221 ~yd~~~~~W 229 (341)
T PLN02153 221 FFDPASGKW 229 (341)
T ss_pred EEEcCCCcE
Confidence 999998654
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.39 E-value=8.8e-12 Score=117.65 Aligned_cols=110 Identities=16% Similarity=0.279 Sum_probs=80.5
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCC-CCccccceEEeCCCcEEEEcCccCCCCCc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMP-SPRVMGEMLLLPTGDVLIINGAKKGTAGW 91 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~-~~R~~~~~v~LpdG~VlvvGG~~~g~ag~ 91 (286)
...+|+|+||.. .+++.++|+....++|+.. +|+ .+|..+.++.+ ||+|||+||......
T Consensus 16 ~~~~vyv~GG~~---------------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~-~~~iYv~GG~~~~~~-- 77 (346)
T TIGR03547 16 IGDKVYVGLGSA---------------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI-DGKLYVFGGIGKANS-- 77 (346)
T ss_pred ECCEEEEEcccc---------------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEE-CCEEEEEeCCCCCCC--
Confidence 367899999963 1456789986667899988 998 58998887776 999999999752110
Q ss_pred cCCCCCCCccEEecCCCCCCCceEEcC-CCCCCCccceeeEEcCCCcEEEeCCCC
Q 043381 92 NFATDPNTTPVLYEPNDPINERFSELT-PTSKPRMCHSTSVVLPDGKILVAGSNP 145 (286)
Q Consensus 92 ~~~~~~~~~~e~YdP~t~~g~~wt~~a-~~~~~R~yHS~A~LLpDGrVlv~GG~~ 145 (286)
......+.+.|.|||.++ +|+.++ +++.+|..|+.+.+ -+|+|||.||..
T Consensus 78 ~~~~~~~~~v~~Yd~~~~---~W~~~~~~~p~~~~~~~~~~~-~~g~IYviGG~~ 128 (346)
T TIGR03547 78 EGSPQVFDDVYRYDPKKN---SWQKLDTRSPVGLLGASGFSL-HNGQAYFTGGVN 128 (346)
T ss_pred CCcceecccEEEEECCCC---EEecCCCCCCCcccceeEEEE-eCCEEEEEcCcC
Confidence 000113457899999999 999997 45666666654422 299999999964
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.38 E-value=3.8e-12 Score=120.11 Aligned_cols=118 Identities=13% Similarity=0.180 Sum_probs=81.9
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCcc-------ccceEEeCCCcEEEEcCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRV-------MGEMLLLPTGDVLIINGAK 85 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~-------~~~~v~LpdG~VlvvGG~~ 85 (286)
..++|+|+||..... ..+..+..+|+....++|+.. +|+.+|. .|.++++ +|+|||+||..
T Consensus 199 ~~~~iyv~GG~~~~~----------~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~-~~~Iyv~GG~~ 267 (346)
T TIGR03547 199 KGNKLLLINGEIKPG----------LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGIS-NGVLLVAGGAN 267 (346)
T ss_pred ECCEEEEEeeeeCCC----------ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEE-CCEEEEeecCC
Confidence 367999999975211 112345567765445799987 9988763 3334555 99999999975
Q ss_pred CCCC--------CccC-CCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCC
Q 043381 86 KGTA--------GWNF-ATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHS 147 (286)
Q Consensus 86 ~g~a--------g~~~-~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~ 147 (286)
.... -+.. ....+.+.|+|||+++ +|+.+++|+.+|.+|+++++ +++|||.||....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~~~~ 333 (346)
T TIGR03547 268 FPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKLPQGLAYGVSVSW--NNGVLLIGGENSG 333 (346)
T ss_pred CCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCCCCCceeeEEEEc--CCEEEEEeccCCC
Confidence 2100 0000 0112346899999999 99999999999999876666 9999999997554
No 15
>PLN02153 epithiospecifier protein
Probab=99.31 E-value=4e-11 Score=113.38 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=91.9
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCC-CCcc---ccceEEeCCCcEEEEcCccCCC
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMP-SPRV---MGEMLLLPTGDVLIINGAKKGT 88 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~-~~R~---~~~~v~LpdG~VlvvGG~~~g~ 88 (286)
...+|+|+||..... ...++...+||+. ..+|+.. +|. .+|. .+.++++ +++|||+||....
T Consensus 31 ~~~~iyv~GG~~~~~---------~~~~~~~~~yd~~--~~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~- 97 (341)
T PLN02153 31 VGDKLYSFGGELKPN---------EHIDKDLYVFDFN--THTWSIAPANGDVPRISCLGVRMVAV-GTKLYIFGGRDEK- 97 (341)
T ss_pred ECCEEEEECCccCCC---------CceeCcEEEEECC--CCEEEEcCccCCCCCCccCceEEEEE-CCEEEEECCCCCC-
Confidence 367999999975211 1235688999987 4789987 663 4543 4555555 9999999997521
Q ss_pred CCccCCCCCCCccEEecCCCCCCCceEEcCCC-----CCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEE
Q 043381 89 AGWNFATDPNTTPVLYEPNDPINERFSELTPT-----SKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRI 163 (286)
Q Consensus 89 ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~-----~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~v 163 (286)
......++|||.++ +|+.+++| +.+|..|+.+++ +++|||.||......... .. ....+
T Consensus 98 -------~~~~~v~~yd~~t~---~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~--~~--~~~~v 161 (341)
T PLN02153 98 -------REFSDFYSYDTVKN---EWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKT--PE--RFRTI 161 (341)
T ss_pred -------CccCcEEEEECCCC---EEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCC--Cc--ccceE
Confidence 12346789999999 99999887 789999988776 899999999654321100 00 12369
Q ss_pred EEEeCCCCC
Q 043381 164 EKFYPPYFD 172 (286)
Q Consensus 164 E~y~Ppyl~ 172 (286)
|+|+|..--
T Consensus 162 ~~yd~~~~~ 170 (341)
T PLN02153 162 EAYNIADGK 170 (341)
T ss_pred EEEECCCCe
Confidence 999998753
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.30 E-value=1.5e-11 Score=118.20 Aligned_cols=132 Identities=11% Similarity=0.137 Sum_probs=87.2
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccc-------cceEEeCCCcEEEEcCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVM-------GEMLLLPTGDVLIINGAK 85 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~-------~~~v~LpdG~VlvvGG~~ 85 (286)
.+++|+|+||..... ..+..+..+++.....+|+.. +|+.+|.. +.++++.+|+|||+||..
T Consensus 220 ~~~~iYv~GG~~~~~----------~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 220 KGNKLWLINGEIKPG----------LRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred ECCEEEEEeeeECCC----------cCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccC
Confidence 467999999974211 112233334443335899988 99988742 222344599999999975
Q ss_pred CCCC------C--cc-CCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCC
Q 043381 86 KGTA------G--WN-FATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSK 156 (286)
Q Consensus 86 ~g~a------g--~~-~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~ 156 (286)
.... + +. .....+...|+|||+++ +|+.+++|+.+|.+|+++++ +++|||.||......
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~r~~~~av~~--~~~iyv~GG~~~~~~------- 357 (376)
T PRK14131 290 FPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGELPQGLAYGVSVSW--NNGVLLIGGETAGGK------- 357 (376)
T ss_pred CCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcCCCCccceEEEEe--CCEEEEEcCCCCCCc-------
Confidence 2100 0 00 00112345799999999 99999999999999976555 999999999654321
Q ss_pred CCcccEEEEEeCC
Q 043381 157 YPTELRIEKFYPP 169 (286)
Q Consensus 157 ~p~~~~vE~y~Pp 169 (286)
...+|+.|.|.
T Consensus 358 --~~~~v~~~~~~ 368 (376)
T PRK14131 358 --AVSDVTLLSWD 368 (376)
T ss_pred --EeeeEEEEEEc
Confidence 13378888886
No 17
>PLN02193 nitrile-specifier protein
Probab=99.29 E-value=7e-11 Score=117.00 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=94.9
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cC---CCCccccceEEeCCCcEEEEcCccCCCC
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MM---PSPRVMGEMLLLPTGDVLIINGAKKGTA 89 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M---~~~R~~~~~v~LpdG~VlvvGG~~~g~a 89 (286)
..++|+|+||.... ..++++++||+. +++|+.. +| |.+|..|.++++ +++|||+||... .
T Consensus 227 ~~~~lYvfGG~~~~-----------~~~ndv~~yD~~--t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~-~- 290 (470)
T PLN02193 227 IGSTLYVFGGRDAS-----------RQYNGFYSFDTT--TNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSA-T- 290 (470)
T ss_pred ECCEEEEECCCCCC-----------CCCccEEEEECC--CCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCC-C-
Confidence 36789999997521 246789999987 5899987 77 889999987776 999999999752 1
Q ss_pred CccCCCCCCCccEEecCCCCCCCceEEcCC---CCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEE
Q 043381 90 GWNFATDPNTTPVLYEPNDPINERFSELTP---TSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKF 166 (286)
Q Consensus 90 g~~~~~~~~~~~e~YdP~t~~g~~wt~~a~---~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y 166 (286)
......+.|||.++ +|+.+++ +..+|..|+.+++ +++||+.||..... ...+++|
T Consensus 291 ------~~~~~~~~yd~~t~---~W~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~-----------~~dv~~y 348 (470)
T PLN02193 291 ------ARLKTLDSYNIVDK---KWFHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCE-----------VDDVHYY 348 (470)
T ss_pred ------CCcceEEEEECCCC---EEEeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCc-----------cCceEEE
Confidence 12345689999999 9998875 6788999987776 99999999953221 2369999
Q ss_pred eCCCCCC
Q 043381 167 YPPYFDE 173 (286)
Q Consensus 167 ~Ppyl~~ 173 (286)
+|....+
T Consensus 349 D~~t~~W 355 (470)
T PLN02193 349 DPVQDKW 355 (470)
T ss_pred ECCCCEE
Confidence 9998644
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.25 E-value=9.5e-11 Score=109.87 Aligned_cols=133 Identities=13% Similarity=0.147 Sum_probs=92.8
Q ss_pred ccEEEEEcCCCCCCCcccCC-CccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCcc
Q 043381 15 RAEVLICGGAKPEAGMLAGK-GEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWN 92 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~-~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~ 92 (286)
...++|+||.+... .+.. .......+.+.+++....+.+|... +||.+|..+.++.+ +++||++||...
T Consensus 13 ~~~l~v~GG~~~~~--~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~-~~~lyviGG~~~------ 83 (323)
T TIGR03548 13 GDYILVAGGCNFPE--DPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSV-ENGIYYIGGSNS------ 83 (323)
T ss_pred CCEEEEeeccCCCC--CchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEE-CCEEEEEcCCCC------
Confidence 56899999986221 0000 0011234556666521112369888 99999998887777 899999999652
Q ss_pred CCCCCCCccEEecCCCCCCCce----EEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeC
Q 043381 93 FATDPNTTPVLYEPNDPINERF----SELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYP 168 (286)
Q Consensus 93 ~~~~~~~~~e~YdP~t~~g~~w----t~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~P 168 (286)
.....+.+.||+.++ +| +.+++|+.+|..|+.+++ +++|||.||..... . ..++|+|+|
T Consensus 84 --~~~~~~v~~~d~~~~---~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~--------~--~~~v~~yd~ 146 (323)
T TIGR03548 84 --SERFSSVYRITLDES---KEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGK--------P--SNKSYLFNL 146 (323)
T ss_pred --CCCceeEEEEEEcCC---ceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCc--------c--CceEEEEcC
Confidence 122446789999998 77 789999999999988877 99999999963221 1 237999999
Q ss_pred CCCCC
Q 043381 169 PYFDE 173 (286)
Q Consensus 169 pyl~~ 173 (286)
....+
T Consensus 147 ~~~~W 151 (323)
T TIGR03548 147 ETQEW 151 (323)
T ss_pred CCCCe
Confidence 87543
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.19 E-value=5e-10 Score=107.58 Aligned_cols=110 Identities=15% Similarity=0.288 Sum_probs=79.8
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCC-CCccccceEEeCCCcEEEEcCccCCCCCc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMP-SPRVMGEMLLLPTGDVLIINGAKKGTAGW 91 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~-~~R~~~~~v~LpdG~VlvvGG~~~g~ag~ 91 (286)
...+|+|+||... +.+.++|+....+.|+.. +|+ .+|..+.++.+ +++|||+||.......
T Consensus 37 ~~~~iyv~gG~~~---------------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~-~~~IYV~GG~~~~~~~- 99 (376)
T PRK14131 37 DNNTVYVGLGSAG---------------TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI-DGKLYVFGGIGKTNSE- 99 (376)
T ss_pred ECCEEEEEeCCCC---------------CeEEEEECCCCCCCeEECCcCCCCCcccceEEEE-CCEEEEEcCCCCCCCC-
Confidence 3679999999631 236789987656899987 897 48988876666 9999999997521100
Q ss_pred cCCCCCCCccEEecCCCCCCCceEEcCC-CCCCCccceeeEEcCCCcEEEeCCCC
Q 043381 92 NFATDPNTTPVLYEPNDPINERFSELTP-TSKPRMCHSTSVVLPDGKILVAGSNP 145 (286)
Q Consensus 92 ~~~~~~~~~~e~YdP~t~~g~~wt~~a~-~~~~R~yHS~A~LLpDGrVlv~GG~~ 145 (286)
.....+.+.+.|||.++ +|+.+++ ++.+|..|+.+++ -|++|||.||..
T Consensus 100 -~~~~~~~~v~~YD~~~n---~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~ 149 (376)
T PRK14131 100 -GSPQVFDDVYKYDPKTN---SWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVN 149 (376)
T ss_pred -CceeEcccEEEEeCCCC---EEEeCCCCCCCcccceEEEEe-eCCEEEEECCCC
Confidence 00122446789999999 9999986 4666777765552 399999999964
No 20
>PLN02193 nitrile-specifier protein
Probab=99.14 E-value=7.9e-10 Score=109.53 Aligned_cols=124 Identities=13% Similarity=0.206 Sum_probs=90.4
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-c---CCCC-ccccceEEeCCCcEEEEcCccCCC
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-M---MPSP-RVMGEMLLLPTGDVLIINGAKKGT 88 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~---M~~~-R~~~~~v~LpdG~VlvvGG~~~g~ 88 (286)
...+|+++||..... ....+++++||+. ..+|+.. . +|.. |..|+++++ +++|||+||... .
T Consensus 174 ~~~~iyv~GG~~~~~---------~~~~~~v~~yD~~--~~~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~-~ 240 (470)
T PLN02193 174 VGNKIYSFGGEFTPN---------QPIDKHLYVFDLE--TRTWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDA-S 240 (470)
T ss_pred ECCEEEEECCcCCCC---------CCeeCcEEEEECC--CCEEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCC-C
Confidence 357899999974211 1234679999987 4899975 3 4443 456666666 999999999752 1
Q ss_pred CCccCCCCCCCccEEecCCCCCCCceEEcCCC---CCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEE
Q 043381 89 AGWNFATDPNTTPVLYEPNDPINERFSELTPT---SKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEK 165 (286)
Q Consensus 89 ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~---~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~ 165 (286)
......++|||.++ +|+.++++ +.+|.+|++++. +++|||.||.....+ ...+++
T Consensus 241 -------~~~ndv~~yD~~t~---~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~----------~~~~~~ 298 (470)
T PLN02193 241 -------RQYNGFYSFDTTTN---EWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATAR----------LKTLDS 298 (470)
T ss_pred -------CCCccEEEEECCCC---EEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCC----------cceEEE
Confidence 12345789999999 99999988 789999987776 899999999644321 236899
Q ss_pred EeCCCCC
Q 043381 166 FYPPYFD 172 (286)
Q Consensus 166 y~Ppyl~ 172 (286)
|+|....
T Consensus 299 yd~~t~~ 305 (470)
T PLN02193 299 YNIVDKK 305 (470)
T ss_pred EECCCCE
Confidence 9987753
No 21
>PF13964 Kelch_6: Kelch motif
Probab=98.80 E-value=1.2e-08 Score=70.43 Aligned_cols=50 Identities=20% Similarity=0.468 Sum_probs=42.3
Q ss_pred CccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCC
Q 043381 64 PRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPR 124 (286)
Q Consensus 64 ~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R 124 (286)
+|..|.++++ +|+|||+||.... .......++|||+++ +|+.+++|+.||
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence 5888987776 9999999998631 234567899999999 999999999998
No 22
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.77 E-value=4e-08 Score=89.94 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=72.6
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecC--CCCCeEee--cCCCCccccceEEeCCCcEEEEcCccCCCC
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITN--KSATWQRE--MMPSPRVMGEMLLLPTGDVLIINGAKKGTA 89 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~--~~~~W~~~--~M~~~R~~~~~v~LpdG~VlvvGG~~~g~a 89 (286)
.+|++|+.||...| .+....+++.. ....|... .|..+|++.++++||||+|+|+||...
T Consensus 76 ~dG~ll~tGG~~~G-------------~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~--- 139 (243)
T PF07250_consen 76 PDGRLLQTGGDNDG-------------NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN--- 139 (243)
T ss_pred CCCCEEEeCCCCcc-------------ccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC---
Confidence 47999999997532 23344556532 24579876 699999999999999999999999751
Q ss_pred CccCCCCCCCccEEecCCCCCC--CceEEcCC--CCCCCccceeeEEcCCCcEEEeCCC
Q 043381 90 GWNFATDPNTTPVLYEPNDPIN--ERFSELTP--TSKPRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 90 g~~~~~~~~~~~e~YdP~t~~g--~~wt~~a~--~~~~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
+ +-|+|.+..... .+|..+.. ...+..+.-...|||||+||+.+..
T Consensus 140 -------~--t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 140 -------P--TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred -------C--cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 2 347776643321 13333332 1344554446888999999999875
No 23
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.72 E-value=5.8e-08 Score=88.94 Aligned_cols=93 Identities=17% Similarity=0.328 Sum_probs=69.5
Q ss_pred CcEEEEEecCCCCCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCC-CCCCceEEcC-C
Q 043381 42 QDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPND-PINERFSELT-P 119 (286)
Q Consensus 42 ~s~~~id~~~~~~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t-~~g~~wt~~a-~ 119 (286)
.-+..||+. +++++...+..-=.++..++|+||+++++||...|. ....+|+|.. +....|.+.. .
T Consensus 46 a~s~~yD~~--tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~----------~~ir~~~p~~~~~~~~w~e~~~~ 113 (243)
T PF07250_consen 46 AHSVEYDPN--TNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGN----------KAIRIFTPCTSDGTCDWTESPND 113 (243)
T ss_pred EEEEEEecC--CCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccc----------cceEEEecCCCCCCCCceECccc
Confidence 344567776 377776555555667777999999999999976432 2456888877 3344898875 5
Q ss_pred CCCCCccceeeEEcCCCcEEEeCCCCCC
Q 043381 120 TSKPRMCHSTSVVLPDGKILVAGSNPHS 147 (286)
Q Consensus 120 ~~~~R~yHS~A~LLpDGrVlv~GG~~~~ 147 (286)
|..+|.|.+ +..|+||+|+|+||....
T Consensus 114 m~~~RWYpT-~~~L~DG~vlIvGG~~~~ 140 (243)
T PF07250_consen 114 MQSGRWYPT-ATTLPDGRVLIVGGSNNP 140 (243)
T ss_pred ccCCCcccc-ceECCCCCEEEEeCcCCC
Confidence 999999985 788899999999997644
No 24
>smart00612 Kelch Kelch domain.
Probab=98.52 E-value=1.7e-07 Score=62.32 Aligned_cols=45 Identities=18% Similarity=0.462 Sum_probs=37.6
Q ss_pred cEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEE
Q 043381 77 DVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVV 132 (286)
Q Consensus 77 ~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~L 132 (286)
+|||+||... .....+.++|||.++ +|+.+++|+.+|.+|+.+++
T Consensus 1 ~iyv~GG~~~--------~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDG--------GQRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCC--------CceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence 6899999752 123456899999999 99999999999999987776
No 25
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.37 E-value=1.9e-07 Score=63.16 Aligned_cols=47 Identities=21% Similarity=0.507 Sum_probs=38.3
Q ss_pred CccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCC
Q 043381 64 PRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTS 121 (286)
Q Consensus 64 ~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~ 121 (286)
+|..+.++++ +++|||+||... ......+.|.|||.++ +|+.+++|+
T Consensus 1 pR~~~~~~~~-~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVV-GNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEE-TTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred CCccCEEEEE-CCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence 5888987777 999999999873 1235567899999999 999998874
No 26
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.31 E-value=4.4e-06 Score=83.41 Aligned_cols=106 Identities=21% Similarity=0.372 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee----cCCCCccccceEEeCCCcEEEEcCccCCCCC
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE----MMPSPRVMGEMLLLPTGDVLIINGAKKGTAG 90 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag 90 (286)
..+++++||... .+ .-++....+|+. +.+|+.. .+|.+|..|.+++. +-+|||.||....
T Consensus 122 ~~~l~lfGG~~~-~~---------~~~~~l~~~d~~--t~~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~--- 185 (482)
T KOG0379|consen 122 GDKLYLFGGTDK-KY---------RNLNELHSLDLS--TRTWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGT--- 185 (482)
T ss_pred CCeEEEEccccC-CC---------CChhheEeccCC--CCcEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCc---
Confidence 358999999873 11 226778888886 5899864 68999999997776 7999999997621
Q ss_pred ccCCCCCCCccEEecCCCCCCCceEE---cCCCCCCCccceeeEEcCCCcEEEeCCCC
Q 043381 91 WNFATDPNTTPVLYEPNDPINERFSE---LTPTSKPRMCHSTSVVLPDGKILVAGSNP 145 (286)
Q Consensus 91 ~~~~~~~~~~~e~YdP~t~~g~~wt~---~a~~~~~R~yHS~A~LLpDGrVlv~GG~~ 145 (286)
.+-+....+||+++. +|.. ..+.+.||..|++++. +.+.|+.||..
T Consensus 186 ----~~~~ndl~i~d~~~~---~W~~~~~~g~~P~pR~gH~~~~~--~~~~~v~gG~~ 234 (482)
T KOG0379|consen 186 ----GDSLNDLHIYDLETS---TWSELDTQGEAPSPRYGHAMVVV--GNKLLVFGGGD 234 (482)
T ss_pred ----ccceeeeeeeccccc---cceecccCCCCCCCCCCceEEEE--CCeEEEEeccc
Confidence 123446779999999 9986 4567889999998888 89999998877
No 27
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.20 E-value=1.2e-06 Score=59.94 Aligned_cols=48 Identities=10% Similarity=0.275 Sum_probs=30.1
Q ss_pred CccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCC
Q 043381 64 PRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTS 121 (286)
Q Consensus 64 ~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~ 121 (286)
+|..|.++.+.|++|||+||.... .......++||++++ +|+.+++|+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence 699999999999999999998731 124556789999999 999997764
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.14 E-value=1.6e-05 Score=79.41 Aligned_cols=108 Identities=20% Similarity=0.370 Sum_probs=80.5
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee----cCCCCccccceEEeCCCcEEEEcCccCCCCC
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE----MMPSPRVMGEMLLLPTGDVLIINGAKKGTAG 90 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag 90 (286)
.-+++|+||..... ..++++.++|+.. .+|... +-|.||..|.+++. +.++||+||...+...
T Consensus 173 g~~l~vfGG~~~~~----------~~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 173 GTKLVVFGGIGGTG----------DSLNDLHIYDLET--STWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVY 239 (482)
T ss_pred CCEEEEECCccCcc----------cceeeeeeecccc--ccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCce
Confidence 46899999986211 2679999999985 779864 67889999998888 8888888886522221
Q ss_pred ccCCCCCCCccEEecCCCCCCCceEEc---CCCCCCCccceeeEEcCCCcEEEeCCCCCC
Q 043381 91 WNFATDPNTTPVLYEPNDPINERFSEL---TPTSKPRMCHSTSVVLPDGKILVAGSNPHS 147 (286)
Q Consensus 91 ~~~~~~~~~~~e~YdP~t~~g~~wt~~---a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~ 147 (286)
....-++|=.+- +|..+ ...+.+|++|+.++. .-++++.||....
T Consensus 240 -------l~D~~~ldl~~~---~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 240 -------LNDVHILDLSTW---EWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred -------ecceEeeecccc---eeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 224568888887 99854 457899999998855 6778888886664
No 29
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.03 E-value=1.2e-05 Score=55.33 Aligned_cols=49 Identities=16% Similarity=0.424 Sum_probs=35.6
Q ss_pred CccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCC
Q 043381 64 PRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTS 121 (286)
Q Consensus 64 ~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~ 121 (286)
+|..|.++++ |+||||+||...+. ...-....++||++++ +|+.+++|.
T Consensus 1 ~r~~hs~~~~-~~kiyv~GG~~~~~-----~~~~~~~v~~~d~~t~---~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVL-DGKIYVFGGYGTDN-----GGSSSNDVWVFDTETN---QWTELSPMG 49 (49)
T ss_pred CccceEEEEE-CCEEEEECCcccCC-----CCcccceeEEEECCCC---EEeecCCCC
Confidence 5788875555 99999999982111 1123345789999999 999998873
No 30
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.85 E-value=3.8e-05 Score=52.70 Aligned_cols=48 Identities=10% Similarity=0.269 Sum_probs=37.9
Q ss_pred CCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeE
Q 043381 75 TGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSV 131 (286)
Q Consensus 75 dG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~ 131 (286)
+++|||.||.... ......+...||+.++ +|+++++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~------~~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDD------GGTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCC------CCCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence 5789999997621 1223446779999999 9999999999999998654
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.71 E-value=0.0002 Score=66.67 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=55.8
Q ss_pred CCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEE---cCCCCCCCccceeeEEcCCCc
Q 043381 61 MPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSE---LTPTSKPRMCHSTSVVLPDGK 137 (286)
Q Consensus 61 M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~---~a~~~~~R~yHS~A~LLpDGr 137 (286)
.|..|+.|+ |++-++|+||-||... ..+....--.|||+++ +|.. ..-.+-+|-.||..++ ...
T Consensus 75 VPyqRYGHt-vV~y~d~~yvWGGRND-------~egaCN~Ly~fDp~t~---~W~~p~v~G~vPgaRDGHsAcV~--gn~ 141 (392)
T KOG4693|consen 75 VPYQRYGHT-VVEYQDKAYVWGGRND-------DEGACNLLYEFDPETN---VWKKPEVEGFVPGARDGHSACVW--GNQ 141 (392)
T ss_pred cchhhcCce-EEEEcceEEEEcCccC-------cccccceeeeeccccc---cccccceeeecCCccCCceeeEE--CcE
Confidence 467799998 6666999999999752 1122233458999999 9974 3457788999987776 778
Q ss_pred EEEeCCCCCCC
Q 043381 138 ILVAGSNPHSR 148 (286)
Q Consensus 138 Vlv~GG~~~~~ 148 (286)
.||.||.....
T Consensus 142 MyiFGGye~~a 152 (392)
T KOG4693|consen 142 MYIFGGYEEDA 152 (392)
T ss_pred EEEecChHHHH
Confidence 89999976553
No 32
>smart00612 Kelch Kelch domain.
Probab=97.68 E-value=5.9e-05 Score=49.86 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEEe
Q 043381 17 EVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLLL 73 (286)
Q Consensus 17 ~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~L 73 (286)
+|+|+||.... ..++++++||+. +++|+.. +|+.+|..+.++++
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYDPE--TNKWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEECCC--CCeEccCCCCCCccccceEEEe
Confidence 58999997521 347889999987 4899988 99999999987776
No 33
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.48 E-value=0.00028 Score=65.66 Aligned_cols=110 Identities=15% Similarity=0.305 Sum_probs=81.4
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEe---e-cCCCCccccceEEeCCCcEEEEcCccCCCC
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQR---E-MMPSPRVMGEMLLLPTGDVLIINGAKKGTA 89 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~---~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~a 89 (286)
++.++++-||-+. .+ .+.+.-.-+|++ .++|.. + -.|-+|-.|.++++ ...+||.||......
T Consensus 87 y~d~~yvWGGRND-~e---------gaCN~Ly~fDp~--t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 87 YQDKAYVWGGRND-DE---------GACNLLYEFDPE--TNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQ 153 (392)
T ss_pred EcceEEEEcCccC-cc---------cccceeeeeccc--cccccccceeeecCCccCCceeeEE-CcEEEEecChHHHHH
Confidence 4889999999862 22 356777778887 489974 3 68999999999999 889999999874332
Q ss_pred CccCCCCCCCccEEecCCCCCCCceEEcC---CCCCCCccceeeEEcCCCcEEEeCCCCCC
Q 043381 90 GWNFATDPNTTPVLYEPNDPINERFSELT---PTSKPRMCHSTSVVLPDGKILVAGSNPHS 147 (286)
Q Consensus 90 g~~~~~~~~~~~e~YdP~t~~g~~wt~~a---~~~~~R~yHS~A~LLpDGrVlv~GG~~~~ 147 (286)
-|+ ...-.+|=+|- +|+.+- ..+.-|-.|+..++ |++.||.||-...
T Consensus 154 ~FS------~d~h~ld~~Tm---tWr~~~Tkg~PprwRDFH~a~~~--~~~MYiFGGR~D~ 203 (392)
T KOG4693|consen 154 RFS------QDTHVLDFATM---TWREMHTKGDPPRWRDFHTASVI--DGMMYIFGGRSDE 203 (392)
T ss_pred hhh------ccceeEeccce---eeeehhccCCCchhhhhhhhhhc--cceEEEecccccc
Confidence 222 23447788888 999764 34555779976666 8999999995443
No 34
>PF13964 Kelch_6: Kelch motif
Probab=97.38 E-value=0.00031 Score=48.17 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=33.4
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPR 65 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R 65 (286)
..++|+|+||.... ...++++++||+. +.+|+.. +|+.+|
T Consensus 10 ~~~~iyv~GG~~~~----------~~~~~~v~~yd~~--t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 10 VGGKIYVFGGYDNS----------GKYSNDVERYDPE--TNTWEQLPPMPTPR 50 (50)
T ss_pred ECCEEEEECCCCCC----------CCccccEEEEcCC--CCcEEECCCCCCCC
Confidence 47899999998621 2568999999998 5899998 999998
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.27 E-value=0.00072 Score=46.29 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee-cCCCCccccceEE
Q 043381 16 AEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE-MMPSPRVMGEMLL 72 (286)
Q Consensus 16 ~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~ 72 (286)
.+|+|+||.... ....++++.++|+. +.+|+.. ++|.+|..|.+++
T Consensus 2 ~~~~vfGG~~~~---------~~~~~nd~~~~~~~--~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 2 NKLYVFGGYDDD---------GGTRLNDVWVFDLD--TNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CEEEEECCcCCC---------CCCEecCEEEEECC--CCEEEECCCCCCCccceEEEE
Confidence 579999998721 12567999999996 5899988 9999999998765
No 36
>PLN02772 guanylate kinase
Probab=97.26 E-value=0.00097 Score=65.19 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=55.2
Q ss_pred CCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEE---cCCCCCCCccceeeEEcCCCcE
Q 043381 62 PSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSE---LTPTSKPRMCHSTSVVLPDGKI 138 (286)
Q Consensus 62 ~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~---~a~~~~~R~yHS~A~LLpDGrV 138 (286)
..+|..++++.. +.|+||+||.... + ......-+||+.+. +|+. +..-+-+|-.|| |+++.|.||
T Consensus 22 ~~~~~~~tav~i-gdk~yv~GG~~d~----~---~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhS-a~v~~~~ri 89 (398)
T PLN02772 22 VKPKNRETSVTI-GDKTYVIGGNHEG----N---TLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYS-AVVLNKDRI 89 (398)
T ss_pred CCCCCcceeEEE-CCEEEEEcccCCC----c---cccceEEEEECCCC---cEecccccCCCCCCCCcce-EEEECCceE
Confidence 347888987777 8999999996521 0 01234569999999 9984 678899999997 777889999
Q ss_pred EEeCCC
Q 043381 139 LVAGSN 144 (286)
Q Consensus 139 lv~GG~ 144 (286)
||.++.
T Consensus 90 lv~~~~ 95 (398)
T PLN02772 90 LVIKKG 95 (398)
T ss_pred EEEeCC
Confidence 999764
No 37
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.21 E-value=0.0033 Score=61.55 Aligned_cols=113 Identities=15% Similarity=0.287 Sum_probs=81.2
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee---cCCCCccccceEEeCCCcEEEEcCccCCCCCc
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE---MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGW 91 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~---~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~ 91 (286)
.-+++++||-- |. +.-+..-+.-.+|+.. ++.|... .-|.+|+.|.+|+.|.|.+|+.||--..-.+
T Consensus 78 keELilfGGEf---~n----gqkT~vYndLy~Yn~k--~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq- 147 (521)
T KOG1230|consen 78 KEELILFGGEF---YN----GQKTHVYNDLYSYNTK--KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQ- 147 (521)
T ss_pred cceeEEeccee---ec----ceeEEEeeeeeEEecc--ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcch-
Confidence 34889999952 22 1223344666777765 6999976 5688899999999999999999996421100
Q ss_pred cCCCCCCC-ccEEecCCCCCCCceEEcC--CCCCCCccceeeEEcCCCcEEEeCCC
Q 043381 92 NFATDPNT-TPVLYEPNDPINERFSELT--PTSKPRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 92 ~~~~~~~~-~~e~YdP~t~~g~~wt~~a--~~~~~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
..--.+ .-.++|-.++ +|+.++ -.+.+|..|-+.+. --++++.||.
T Consensus 148 --~qF~HYkD~W~fd~~tr---kweql~~~g~PS~RSGHRMvaw--K~~lilFGGF 196 (521)
T KOG1230|consen 148 --EQFHHYKDLWLFDLKTR---KWEQLEFGGGPSPRSGHRMVAW--KRQLILFGGF 196 (521)
T ss_pred --hhhhhhhheeeeeeccc---hheeeccCCCCCCCccceeEEe--eeeEEEEcce
Confidence 000012 2458999999 999865 47889999998888 7899999994
No 38
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.19 E-value=0.002 Score=62.99 Aligned_cols=116 Identities=20% Similarity=0.385 Sum_probs=84.0
Q ss_pred cEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee---cCCCCccccceEEeCCCcEEEEcCccCCCCCcc
Q 043381 16 AEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE---MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWN 92 (286)
Q Consensus 16 ~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~---~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~ 92 (286)
+..+++||-- ..+...-+ .--+....+|+. ..+|+.. .=|.+|+.|.||+- --+++|.||+..-...|.
T Consensus 133 ~~l~~fGGEf----aSPnq~qF-~HYkD~W~fd~~--trkweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~ 204 (521)
T KOG1230|consen 133 NILWLFGGEF----ASPNQEQF-HHYKDLWLFDLK--TRKWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYI 204 (521)
T ss_pred CeEEEecccc----CCcchhhh-hhhhheeeeeec--cchheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceE
Confidence 5788999953 22211222 234566788886 5899976 56999999998887 789999999974333332
Q ss_pred CCCCCCCccEEecCCCCCCCceEEcCCC---CCCCccceeeEEcCCCcEEEeCCCCCC
Q 043381 93 FATDPNTTPVLYEPNDPINERFSELTPT---SKPRMCHSTSVVLPDGKILVAGSNPHS 147 (286)
Q Consensus 93 ~~~~~~~~~e~YdP~t~~g~~wt~~a~~---~~~R~yHS~A~LLpDGrVlv~GG~~~~ 147 (286)
. ....-+||-++= +|+.+.+. +.||..|..++ -|+|.|+|-||.+..
T Consensus 205 Y----yNDvy~FdLdty---kW~Klepsga~PtpRSGcq~~v-tpqg~i~vyGGYsK~ 254 (521)
T KOG1230|consen 205 Y----YNDVYAFDLDTY---KWSKLEPSGAGPTPRSGCQFSV-TPQGGIVVYGGYSKQ 254 (521)
T ss_pred E----eeeeEEEeccce---eeeeccCCCCCCCCCCcceEEe-cCCCcEEEEcchhHh
Confidence 1 123458999999 99987664 68999998777 589999999997654
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.77 E-value=0.0016 Score=43.60 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=29.0
Q ss_pred CCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCC
Q 043381 123 PRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYF 171 (286)
Q Consensus 123 ~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl 171 (286)
||.+|+++++ +++|||+||...... ...++|+|+|..-
T Consensus 1 pR~~~~~~~~--~~~iyv~GG~~~~~~---------~~~~v~~yd~~~~ 38 (47)
T PF01344_consen 1 PRSGHAAVVV--GNKIYVIGGYDGNNQ---------PTNSVEVYDPETN 38 (47)
T ss_dssp -BBSEEEEEE--TTEEEEEEEBESTSS---------BEEEEEEEETTTT
T ss_pred CCccCEEEEE--CCEEEEEeeecccCc---------eeeeEEEEeCCCC
Confidence 6899998888 999999999655211 1458999999864
No 40
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.0072 Score=58.14 Aligned_cols=96 Identities=15% Similarity=0.242 Sum_probs=66.3
Q ss_pred EEEEEecCCCCCeEee-cCCC-CccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCC-
Q 043381 44 CGRIEITNKSATWQRE-MMPS-PRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPT- 120 (286)
Q Consensus 44 ~~~id~~~~~~~W~~~-~M~~-~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~- 120 (286)
--.+|+.+++..|+.. ..|- +|-...++++ +|++|+.||...-.... -.-....-.|||.+| +|+.+...
T Consensus 60 fy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~-~~kLyvFgG~Gk~~~~~---~~~~nd~Y~y~p~~n---sW~kl~t~s 132 (381)
T COG3055 60 FYVLDLKKPGKGWTKIADFPGGARNQAVAAVI-GGKLYVFGGYGKSVSSS---PQVFNDAYRYDPSTN---SWHKLDTRS 132 (381)
T ss_pred ceehhhhcCCCCceEcccCCCcccccchheee-CCeEEEeeccccCCCCC---ceEeeeeEEecCCCC---hhheecccc
Confidence 3478888888999987 6655 4888887777 99999999976322110 011223458999999 99987543
Q ss_pred CCCCccceeeEEcCCCcEEEeCCCCCC
Q 043381 121 SKPRMCHSTSVVLPDGKILVAGSNPHS 147 (286)
Q Consensus 121 ~~~R~yHS~A~LLpDGrVlv~GG~~~~ 147 (286)
+..-.-|+++.+ .+.+|++.||....
T Consensus 133 P~gl~G~~~~~~-~~~~i~f~GGvn~~ 158 (381)
T COG3055 133 PTGLVGASTFSL-NGTKIYFFGGVNQN 158 (381)
T ss_pred ccccccceeEec-CCceEEEEccccHH
Confidence 333446766665 45599999996553
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.29 E-value=0.0096 Score=40.61 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCCCC
Q 043381 123 PRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDE 173 (286)
Q Consensus 123 ~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl~~ 173 (286)
||..|+++++ |++|||.||...... ..+ ..++++|++...-.
T Consensus 1 ~r~~hs~~~~--~~kiyv~GG~~~~~~-----~~~--~~~v~~~d~~t~~W 42 (49)
T PF07646_consen 1 PRYGHSAVVL--DGKIYVFGGYGTDNG-----GSS--SNDVWVFDTETNQW 42 (49)
T ss_pred CccceEEEEE--CCEEEEECCcccCCC-----Ccc--cceeEEEECCCCEE
Confidence 6888987766 999999999811110 122 34799999987643
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.11 E-value=0.0049 Score=41.80 Aligned_cols=40 Identities=28% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCCC
Q 043381 123 PRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFD 172 (286)
Q Consensus 123 ~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl~ 172 (286)
||.+|+ ++++.|++|++.||....... ...+++|++....
T Consensus 1 pR~~h~-~~~~~~~~i~v~GG~~~~~~~---------~~d~~~~d~~~~~ 40 (49)
T PF13418_consen 1 PRYGHS-AVSIGDNSIYVFGGRDSSGSP---------LNDLWIFDIETNT 40 (49)
T ss_dssp --BS-E-EEEE-TTEEEEE--EEE-TEE------------EEEEETTTTE
T ss_pred CcceEE-EEEEeCCeEEEECCCCCCCcc---------cCCEEEEECCCCE
Confidence 699997 555678999999996554211 2368999987653
No 43
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=0.054 Score=52.25 Aligned_cols=121 Identities=16% Similarity=0.271 Sum_probs=80.0
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee--cCCCCccccceEEeCCCcEEEEcCccCCC-CC
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE--MMPSPRVMGEMLLLPTGDVLIINGAKKGT-AG 90 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~--~M~~~R~~~~~v~LpdG~VlvvGG~~~g~-ag 90 (286)
..++++++||..... + ......+++.+||+. .++|+.. .-|..-..+.++.|.+.+|++.||...-. .+
T Consensus 91 ~~~kLyvFgG~Gk~~-----~-~~~~~~nd~Y~y~p~--~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~ 162 (381)
T COG3055 91 IGGKLYVFGGYGKSV-----S-SSPQVFNDAYRYDPS--TNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNG 162 (381)
T ss_pred eCCeEEEeeccccCC-----C-CCceEeeeeEEecCC--CChhheeccccccccccceeEecCCceEEEEccccHHhhhh
Confidence 478999999985321 1 234567899999987 4999987 34545555666777666999999986321 11
Q ss_pred cc-----------------------CCCCCCC--ccEEecCCCCCCCceEEcCCCCC-CCccceeeEEcCCCcEEEeCCC
Q 043381 91 WN-----------------------FATDPNT--TPVLYEPNDPINERFSELTPTSK-PRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 91 ~~-----------------------~~~~~~~--~~e~YdP~t~~g~~wt~~a~~~~-~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
|- ...+-.. ....|||.++ +|+.+...+. ++.. +|+..-+.+++++=|.
T Consensus 163 yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n---~W~~~G~~pf~~~aG--sa~~~~~n~~~lInGE 237 (381)
T COG3055 163 YFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN---QWRNLGENPFYGNAG--SAVVIKGNKLTLINGE 237 (381)
T ss_pred hHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc---hhhhcCcCcccCccC--cceeecCCeEEEEcce
Confidence 20 0111122 3448999999 9999885544 4443 4676668888888886
Q ss_pred CCC
Q 043381 145 PHS 147 (286)
Q Consensus 145 ~~~ 147 (286)
-..
T Consensus 238 iKp 240 (381)
T COG3055 238 IKP 240 (381)
T ss_pred ecC
Confidence 544
No 44
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.96 E-value=0.041 Score=55.47 Aligned_cols=103 Identities=20% Similarity=0.345 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee----cCCCCccccceEEeCCCcEEEEcCccCCCCCc
Q 043381 16 AEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE----MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGW 91 (286)
Q Consensus 16 ~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~ 91 (286)
--|.|+||.+.|- .+.-+.|+- ..++|..- +.|.+-.-+.+|.+ .-|||++||... |
T Consensus 43 ELiviFGGGNEGi------------iDELHvYNT--atnqWf~PavrGDiPpgcAA~Gfvcd-GtrilvFGGMvE----Y 103 (830)
T KOG4152|consen 43 ELIVIFGGGNEGI------------IDELHVYNT--ATNQWFAPAVRGDIPPGCAAFGFVCD-GTRILVFGGMVE----Y 103 (830)
T ss_pred eeEEEecCCcccc------------hhhhhhhcc--ccceeecchhcCCCCCchhhcceEec-CceEEEEccEee----e
Confidence 3478889987432 233344543 36899852 77777666665444 559999999862 3
Q ss_pred cCCCCCCCccEEecCCCCCCCceE--Ec-------CCCCCCCccceeeEEcCCCcEEEeCCCCCC
Q 043381 92 NFATDPNTTPVLYEPNDPINERFS--EL-------TPTSKPRMCHSTSVVLPDGKILVAGSNPHS 147 (286)
Q Consensus 92 ~~~~~~~~~~e~YdP~t~~g~~wt--~~-------a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~ 147 (286)
+ .++-++|.-.+. ||. .+ .+.+.||..||..+. .-+-|+.||-.++
T Consensus 104 G-----kYsNdLYELQas---RWeWkrlkp~~p~nG~pPCPRlGHSFsl~--gnKcYlFGGLaNd 158 (830)
T KOG4152|consen 104 G-----KYSNDLYELQAS---RWEWKRLKPKTPKNGPPPCPRLGHSFSLV--GNKCYLFGGLAND 158 (830)
T ss_pred c-----cccchHHHhhhh---hhhHhhcCCCCCCCCCCCCCccCceeEEe--ccEeEEecccccc
Confidence 2 345678888777 775 22 467889999998887 6899999995554
No 45
>PF13854 Kelch_5: Kelch motif
Probab=94.05 E-value=0.055 Score=35.86 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.7
Q ss_pred CCCCccccceEEeCCCcEEEEcCcc
Q 043381 61 MPSPRVMGEMLLLPTGDVLIINGAK 85 (286)
Q Consensus 61 M~~~R~~~~~v~LpdG~VlvvGG~~ 85 (286)
+|.+|..|++++. +++|||.||..
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYS 24 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCcc
Confidence 5889999998887 89999999987
No 46
>PLN02772 guanylate kinase
Probab=94.02 E-value=0.14 Score=50.42 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=47.9
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee----cCCCCccccceEEeCCCcEEEEcCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE----MMPSPRVMGEMLLLPTGDVLIINGAK 85 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~M~~~R~~~~~v~LpdG~VlvvGG~~ 85 (286)
+..+++|.||.+. +. .+++...++|.. +.+|..- .-|.+|-.|.++++.|+++||+++..
T Consensus 33 igdk~yv~GG~~d--~~--------~~~~~v~i~D~~--t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 33 IGDKTYVIGGNHE--GN--------TLSIGVQILDKI--TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred ECCEEEEEcccCC--Cc--------cccceEEEEECC--CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 3678999999762 11 356777888876 5899852 78999999999999999999999854
No 47
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.46 E-value=0.23 Score=50.32 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=57.3
Q ss_pred CCeEee-----cCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEE---cCCCCCCCc
Q 043381 54 ATWQRE-----MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSE---LTPTSKPRM 125 (286)
Q Consensus 54 ~~W~~~-----~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~---~a~~~~~R~ 125 (286)
..|+.+ +-|.+|..|.+|.+ --.|.|+||...|.. .+-..||-.++ +|.. ....+-+..
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVai-kELiviFGGGNEGii---------DELHvYNTatn---qWf~PavrGDiPpgcA 83 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAI-KELIVIFGGGNEGII---------DELHVYNTATN---QWFAPAVRGDIPPGCA 83 (830)
T ss_pred cceEEEecccCCCCCccccchheee-eeeEEEecCCcccch---------hhhhhhccccc---eeecchhcCCCCCchh
Confidence 578754 78999999999998 677888899776553 23358999999 9984 345666666
Q ss_pred cceeeEEcCCCcEEEeCCC
Q 043381 126 CHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 126 yHS~A~LLpDGrVlv~GG~ 144 (286)
-|+..++ .-|||+.||-
T Consensus 84 A~Gfvcd--GtrilvFGGM 100 (830)
T KOG4152|consen 84 AFGFVCD--GTRILVFGGM 100 (830)
T ss_pred hcceEec--CceEEEEccE
Confidence 7776664 5699999994
No 48
>PF13854 Kelch_5: Kelch motif
Probab=91.17 E-value=0.67 Score=30.55 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=20.8
Q ss_pred CCCCccceeeEEcCCCcEEEeCCCCC
Q 043381 121 SKPRMCHSTSVVLPDGKILVAGSNPH 146 (286)
Q Consensus 121 ~~~R~yHS~A~LLpDGrVlv~GG~~~ 146 (286)
+.+|..|++++. +++||+.||...
T Consensus 2 P~~R~~hs~~~~--~~~iyi~GG~~~ 25 (42)
T PF13854_consen 2 PSPRYGHSAVVV--GNNIYIFGGYSG 25 (42)
T ss_pred CCCccceEEEEE--CCEEEEEcCccC
Confidence 578999998877 899999999874
No 49
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=78.03 E-value=4.5 Score=39.79 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=40.1
Q ss_pred EeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCC
Q 043381 72 LLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPH 146 (286)
Q Consensus 72 ~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~ 146 (286)
.-|||+.++.|+.+. +.-+||+.|. +++..+.--+.+-.....-|||+.++.|+-.+
T Consensus 123 fsp~g~~l~tGsGD~-------------TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 123 FSPTGSRLVTGSGDT-------------TVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred ecCCCceEEecCCCc-------------eEEeeccCCC-----CcceeecCCccEEEEEEECCCcchhhccccCC
Confidence 348999999998652 5679999987 23333333444445566679999999998544
No 50
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=72.50 E-value=4.9 Score=36.09 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=49.5
Q ss_pred cCCCCCeEee---cCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCC---
Q 043381 50 TNKSATWQRE---MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKP--- 123 (286)
Q Consensus 50 ~~~~~~W~~~---~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~--- 123 (286)
.|...+|+.. .++........+.|+||+++++.....+ +.+ + ...+ ..+.|++|+........
T Consensus 190 ~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------r~~-l-~l~~--S~D~g~tW~~~~~i~~~~~~ 258 (275)
T PF13088_consen 190 TDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG-------RSN-L-SLYV--SEDGGKTWSRPKTIDDGPNG 258 (275)
T ss_dssp SSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSST-------SEE-E-EEEE--ECTTCEEEEEEEEEEEEE-C
T ss_pred CCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCC-------CCc-e-EEEE--EeCCCCcCCccEEEeCCCCC
Confidence 3446789853 7788888777888999999998873211 111 1 1122 23336699864433332
Q ss_pred CccceeeEEcCCCcEEE
Q 043381 124 RMCHSTSVVLPDGKILV 140 (286)
Q Consensus 124 R~yHS~A~LLpDGrVlv 140 (286)
....+..+.++||+|+|
T Consensus 259 ~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 259 DSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEEEEETTEEEE
T ss_pred cEECCeeEEeCCCcCCC
Confidence 34456788889999986
No 51
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=71.30 E-value=43 Score=25.43 Aligned_cols=75 Identities=20% Similarity=0.039 Sum_probs=48.7
Q ss_pred CCceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEEEEcCCC
Q 043381 179 RPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPT 258 (286)
Q Consensus 179 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~ 258 (286)
-|.|.+++ |..-..|++++|+-+.-.. ...+|.+= + ...++..++ . ..|++++|..
T Consensus 2 ~P~I~~i~-P~~g~~G~~VtI~G~gFg~----~~~~V~~g-----------~---~~a~v~s~s--d---t~I~~~vP~~ 57 (81)
T cd02849 2 TPLIGHVG-PMMGKAGNTVTISGEGFGS----APGTVYFG-----------T---TAATVISWS--D---TRIVVTVPNV 57 (81)
T ss_pred CCEEeeEc-CCCCCCCCEEEEEEECCCC----CCcEEEEC-----------C---EEeEEEEEC--C---CEEEEEeCCC
Confidence 48899887 8888899998887553221 12222111 1 333444432 2 4789999953
Q ss_pred CCcCCCcceEEEEEc-CCCCCccE
Q 043381 259 AKIAPPSFYLLFVVY-RQVPSPGT 281 (286)
Q Consensus 259 ~~vappG~YmLFv~~-~GvPS~a~ 281 (286)
++|.|-++|.. +|.=|.+.
T Consensus 58 ----~aG~~~V~V~~~~G~~Sn~~ 77 (81)
T cd02849 58 ----PAGNYDVTVKTADGATSNGY 77 (81)
T ss_pred ----CCceEEEEEEeCCCcccCcE
Confidence 89999999997 68777654
No 52
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=69.99 E-value=58 Score=27.14 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=46.6
Q ss_pred CCCCceeecC---CC---ceeecCCEEEEEEEecccccccCcEEEEEE-cCCccccccCCCcc--eEEecceee-ee-cC
Q 043381 177 SYRPSIVSKF---KG---KMVKYGQNFVIQFKLDELEVSLNDLKVTMY-APPFTTHGVSMGQR--LLVLATKEL-ID-VG 245 (286)
Q Consensus 177 ~~RP~i~~~~---~p---~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~-~~~~~THs~n~~QR--~v~L~~~~~-~~-~g 245 (286)
...|+|+... .| ..+..|+.|.+++...+ ...+.++.+- -.-|-.|+-...-+ .....+... .. .|
T Consensus 12 ~~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d---~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g 88 (132)
T PF15418_consen 12 TEKPVITLNEIGAFPENCKVATRGDDIHFEADISD---NSAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYGG 88 (132)
T ss_pred cCCCEEEeeecccCCCCCeEEecCCcEEEEEEEEc---ccceeEEEEEEecCcCcccccccccccccCcEEEEEEcccCC
Confidence 4688888661 13 45889999998877544 2334443332 12233333222110 111111100 00 11
Q ss_pred --CceEEEEEEcCCCCCcCCCcceEEEEEc
Q 043381 246 --SGIFQVSVTAPPTAKIAPPSFYLLFVVY 273 (286)
Q Consensus 246 --~~~~~~~v~~P~~~~vappG~YmLFv~~ 273 (286)
+......+++|.+ |+||-|-+++..
T Consensus 89 ~~~~~~h~~i~IPa~---a~~G~YH~~i~V 115 (132)
T PF15418_consen 89 KKNYDFHEHIDIPAD---APAGDYHFMITV 115 (132)
T ss_pred cccEeEEEeeeCCCC---CCCcceEEEEEE
Confidence 1124556789988 999999877764
No 53
>PRK13684 Ycf48-like protein; Provisional
Probab=68.70 E-value=29 Score=32.98 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=46.4
Q ss_pred CCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCcc--ceeeE
Q 043381 54 ATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMC--HSTSV 131 (286)
Q Consensus 54 ~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~y--HS~A~ 131 (286)
.+|+..+-+..+...++...++|+++++|... . .++. .++.|.+|+..........+ ++.+
T Consensus 204 ~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G--~-------------~~~~-s~d~G~sW~~~~~~~~~~~~~l~~v~- 266 (334)
T PRK13684 204 TAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG--Q-------------IRFN-DPDDLESWSKPIIPEITNGYGYLDLA- 266 (334)
T ss_pred CeEEEeeCCCcccceeeeEcCCCCEEEEecCC--E-------------EEEc-cCCCCCccccccCCccccccceeeEE-
Confidence 46987766677777777888999999987632 1 1221 35667799965322121222 3333
Q ss_pred EcCCCcEEEeCCC
Q 043381 132 VLPDGKILVAGSN 144 (286)
Q Consensus 132 LLpDGrVlv~GG~ 144 (286)
..++++++++|..
T Consensus 267 ~~~~~~~~~~G~~ 279 (334)
T PRK13684 267 YRTPGEIWAGGGN 279 (334)
T ss_pred EcCCCCEEEEcCC
Confidence 3568899998864
No 54
>PRK13684 Ycf48-like protein; Provisional
Probab=67.97 E-value=32 Score=32.66 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=47.6
Q ss_pred EEEecCCCCCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCc
Q 043381 46 RIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRM 125 (286)
Q Consensus 46 ~id~~~~~~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~ 125 (286)
++.-.|...+|+....+..-...+....+||.++++|... .+|--..+.+++|+.+.. ...+.
T Consensus 154 i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G----------------~i~~s~~~gg~tW~~~~~-~~~~~ 216 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRG----------------NFYSTWEPGQTAWTPHQR-NSSRR 216 (334)
T ss_pred EEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCc----------------eEEEEcCCCCCeEEEeeC-CCccc
Confidence 3444444579997633334455666788898877776532 122111122348998754 44455
Q ss_pred cceeeEEcCCCcEEEeCCC
Q 043381 126 CHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 126 yHS~A~LLpDGrVlv~GG~ 144 (286)
.++. ...++|+++++|..
T Consensus 217 l~~i-~~~~~g~~~~vg~~ 234 (334)
T PRK13684 217 LQSM-GFQPDGNLWMLARG 234 (334)
T ss_pred ceee-eEcCCCCEEEEecC
Confidence 5553 45689999888764
No 55
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=66.69 E-value=9.6 Score=27.10 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCC
Q 043381 130 SVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPY 170 (286)
Q Consensus 130 A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppy 170 (286)
..++|||||+++|........ ....+-+|.|+=
T Consensus 6 ~~~q~DGkIlv~G~~~~~~~~--------~~~~l~Rln~DG 38 (55)
T TIGR02608 6 VAVQSDGKILVAGYVDNSSGN--------NDFVLARLNADG 38 (55)
T ss_pred EEECCCCcEEEEEEeecCCCc--------ccEEEEEECCCC
Confidence 455799999999975433110 133566676654
No 56
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=63.98 E-value=54 Score=31.41 Aligned_cols=92 Identities=16% Similarity=0.298 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCC--CCCeEee-c-CCCCccccceEEeCCCcEEEEcCccCCCC
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNK--SATWQRE-M-MPSPRVMGEMLLLPTGDVLIINGAKKGTA 89 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~--~~~W~~~-~-M~~~R~~~~~v~LpdG~VlvvGG~~~g~a 89 (286)
..+....|||-+ +.|.+|++... .+.-... . +-+.=++.+---|.|+.|+..-|-.
T Consensus 107 PSg~~VAcGGLd----------------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~---- 166 (343)
T KOG0286|consen 107 PSGNFVACGGLD----------------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDM---- 166 (343)
T ss_pred CCCCeEEecCcC----------------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCc----
Confidence 356677788764 57899998743 1222222 2 2333445555677788887655532
Q ss_pred CccCCCCCCCccEEecCCCCCCCceE-EcCCCCCCCcccee----eEEcC-CCcEEEeCCCC
Q 043381 90 GWNFATDPNTTPVLYEPNDPINERFS-ELTPTSKPRMCHST----SVVLP-DGKILVAGSNP 145 (286)
Q Consensus 90 g~~~~~~~~~~~e~YdP~t~~g~~wt-~~a~~~~~R~yHS~----A~LLp-DGrVlv~GG~~ 145 (286)
++-+||-++. +-+ ... .|+. -.|.| |++-||.||-+
T Consensus 167 ----------TCalWDie~g---~~~~~f~-------GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 167 ----------TCALWDIETG---QQTQVFH-------GHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred ----------eEEEEEcccc---eEEEEec-------CCcccEEEEecCCCCCCeEEecccc
Confidence 6789998887 332 221 2221 23456 99999999843
No 57
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=63.74 E-value=9.9 Score=38.84 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=71.1
Q ss_pred ccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEee----cCCCCccccceEEeCC-CcEEEEcCccCCCC
Q 043381 15 RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE----MMPSPRVMGEMLLLPT-GDVLIINGAKKGTA 89 (286)
Q Consensus 15 ~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~M~~~R~~~~~v~Lpd-G~VlvvGG~~~g~a 89 (286)
+..|+..||++ | +..++.-..|... .+.|+.+ .-|-.|++|.||+--. -|+|+.|-.- +..
T Consensus 272 ~~CiYLYGGWd-G----------~~~l~DFW~Y~v~--e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~-~sS 337 (723)
T KOG2437|consen 272 TECVYLYGGWD-G----------TQDLADFWAYSVK--ENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYL-DSS 337 (723)
T ss_pred CcEEEEecCcc-c----------chhHHHHHhhcCC--cceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcc-ccc
Confidence 45799999997 2 1334555566644 4789975 4788899999987633 3788887653 111
Q ss_pred CccCCCCCCCccEEecCCCCCCCceEEcCCCCC------CCccceeeEEcCCCcEEEeCCCCC
Q 043381 90 GWNFATDPNTTPVLYEPNDPINERFSELTPTSK------PRMCHSTSVVLPDGKILVAGSNPH 146 (286)
Q Consensus 90 g~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~------~R~yHS~A~LLpDGrVlv~GG~~~ 146 (286)
- ...-+.-..-..||-.++ .|+.+.--.. .-.-|.+.+--.-|-|+|.||-..
T Consensus 338 ~-r~~~s~RsDfW~FDi~~~---~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 338 V-RNSKSLRSDFWRFDIDTN---TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred c-ccccccccceEEEecCCc---eeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 0 000011112347899999 9997754333 223688777644445999999433
No 58
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.80 E-value=50 Score=31.73 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=51.6
Q ss_pred ccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCcc-EEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCC
Q 043381 65 RVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTP-VLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGS 143 (286)
Q Consensus 65 R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~-e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG 143 (286)
..++-.|--|||++|-.-=.+ .++..-. -+||-. . .|+....-..--+.-.--+|++|||.+|+-+
T Consensus 114 HfyGHGvfs~dG~~LYATEnd---------fd~~rGViGvYd~r-~---~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATEND---------FDPNRGVIGVYDAR-E---GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred eeecccccCCCCcEEEeecCC---------CCCCCceEEEEecc-c---ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 345566899999987642111 1122222 489987 4 6776665444333333678899999988754
Q ss_pred C---CCCCcccCCCCCCCcccEEEEEeCCC
Q 043381 144 N---PHSRYNLTSGSKYPTELRIEKFYPPY 170 (286)
Q Consensus 144 ~---~~~~~~~~~~~~~p~~~~vE~y~Ppy 170 (286)
+ .+.++. -+++++|..-|.+
T Consensus 181 GGIethpdfg-------R~~lNldsMePSl 203 (366)
T COG3490 181 GGIETHPDFG-------RTELNLDSMEPSL 203 (366)
T ss_pred CceecccccC-------ccccchhhcCccE
Confidence 4 332221 1467788888877
No 59
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=58.77 E-value=12 Score=33.60 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=49.7
Q ss_pred cCCCCCeEee-cCCCC-----ccccc--eEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCC-
Q 043381 50 TNKSATWQRE-MMPSP-----RVMGE--MLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPT- 120 (286)
Q Consensus 50 ~~~~~~W~~~-~M~~~-----R~~~~--~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~- 120 (286)
.|...+|+.. .++.. ..... .+.++||++++. .... .. .......+|. .+.|++|+.....
T Consensus 85 ~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~-~~------~~~~~~~~~S--~D~G~tW~~~~~~~ 154 (275)
T PF13088_consen 85 TDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHE-SG------GSFSAFVYYS--DDGGKTWSSGSPIP 154 (275)
T ss_dssp SSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEE-SS------CEEEEEEEEE--SSTTSSEEEEEECE
T ss_pred CCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-Eeec-cc------cCcceEEEEe--CCCCceeecccccc
Confidence 4446799975 43322 22222 378899999998 1111 00 0001122343 3445699987776
Q ss_pred CCCCccceeeEEcCCCcEEEeCCC
Q 043381 121 SKPRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 121 ~~~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
...+..+.+.+.++||++++.--.
T Consensus 155 ~~~~~~e~~~~~~~dG~l~~~~R~ 178 (275)
T PF13088_consen 155 DGQGECEPSIVELPDGRLLAVFRT 178 (275)
T ss_dssp CSEEEEEEEEEEETTSEEEEEEEE
T ss_pred ccCCcceeEEEECCCCcEEEEEEc
Confidence 555777877777899999988643
No 60
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=57.08 E-value=11 Score=23.02 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=13.7
Q ss_pred ccceeeEEcCCCcEEEeCCCCC
Q 043381 125 MCHSTSVVLPDGKILVAGSNPH 146 (286)
Q Consensus 125 ~yHS~A~LLpDGrVlv~GG~~~ 146 (286)
.+|+ .+|+.||+|+.-|.|.+
T Consensus 8 ~~ht-~al~~~g~v~~wG~n~~ 28 (30)
T PF13540_consen 8 GYHT-CALTSDGEVYCWGDNNY 28 (30)
T ss_dssp SSEE-EEEE-TTEEEEEE--TT
T ss_pred CCEE-EEEEcCCCEEEEcCCcC
Confidence 4786 55567999999998754
No 61
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=55.67 E-value=83 Score=23.34 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=43.2
Q ss_pred CceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEEEEcCCCCCcCCCcce
Q 043381 188 GKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFY 267 (286)
Q Consensus 188 p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~~~vappG~Y 267 (286)
.+.+..|+.++|+-+.... ..+...+.|+.... +. . +-...|.-. ..... .++++++|++ +.+-+.|
T Consensus 6 ~~~~~~g~~~~I~W~~~~~--~~~~~~I~L~~g~~-~~---~-~~~~~ia~~--v~~~~--gs~~~~~p~~--l~~~~~Y 72 (93)
T PF10342_consen 6 GTVWTAGQPITITWTSDGT--DPGNVTIYLCNGNN-TN---L-NFVQTIASN--VSNSD--GSYTWTIPSD--LPSGGDY 72 (93)
T ss_pred CCEEECCCcEEEEEeCCCC--CCcEEEEEEEcCCC-CC---c-ceeEEEEec--ccCCC--CEEEEEcCCC--CCCCCcE
Confidence 3679999999999875432 24678888887776 11 1 111222211 11111 3566777764 6666677
Q ss_pred EEEEEc
Q 043381 268 LLFVVY 273 (286)
Q Consensus 268 mLFv~~ 273 (286)
.|-+++
T Consensus 73 ~i~~~~ 78 (93)
T PF10342_consen 73 FIQIVN 78 (93)
T ss_pred EEEEEE
Confidence 777766
No 62
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=55.66 E-value=2e+02 Score=27.67 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=52.6
Q ss_pred cCCCCccccce-EEeCCCc--EEEEcCccCCCC------CccCCCCCCCccEEecCCCCCCCceE--EcCCCCCCCccce
Q 043381 60 MMPSPRVMGEM-LLLPTGD--VLIINGAKKGTA------GWNFATDPNTTPVLYEPNDPINERFS--ELTPTSKPRMCHS 128 (286)
Q Consensus 60 ~M~~~R~~~~~-v~LpdG~--VlvvGG~~~g~a------g~~~~~~~~~~~e~YdP~t~~g~~wt--~~a~~~~~R~yHS 128 (286)
+.|.+|+.|.+ |+.--|| +.++||..+--. .|..--+.....-+.|.+-. ..+ .+..+.-....|-
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG---C~tah~lpEl~dG~SFHv 159 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG---CCTAHTLPELQDGQSFHV 159 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc---ccccccchhhcCCeEEEE
Confidence 89999999975 4455564 455677653211 13211122223346677766 665 4777888888883
Q ss_pred eeEEcCCCcEEEeCCCCCCC
Q 043381 129 TSVVLPDGKILVAGSNPHSR 148 (286)
Q Consensus 129 ~A~LLpDGrVlv~GG~~~~~ 148 (286)
| |-.+..||+.||.....
T Consensus 160 -s-lar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 160 -S-LARNDCVYILGGHSLES 177 (337)
T ss_pred -E-EecCceEEEEccEEccC
Confidence 3 34589999999976654
No 63
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=54.87 E-value=1e+02 Score=29.24 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=48.5
Q ss_pred CCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCcc-ceeeEE
Q 043381 54 ATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMC-HSTSVV 132 (286)
Q Consensus 54 ~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~y-HS~A~L 132 (286)
..|+.-..+..|..-+|-.-|||.++++. + |.. ..+....+.+++|+.-..-...+.| +-....
T Consensus 176 ~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~-Gg~------------~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 176 TTWQPHNRNSSRRIQSMGFSPDGNLWMLA--R-GGQ------------IQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp SS-EEEE--SSS-EEEEEE-TTS-EEEEE--T-TTE------------EEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred ccceEEccCccceehhceecCCCCEEEEe--C-CcE------------EEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 46998877777777778888999998764 2 211 1122223333477762211123333 334455
Q ss_pred cCCCcEEEeCCCCCCCcccCCC---------CCCC-cccEEEEEeCCCCC
Q 043381 133 LPDGKILVAGSNPHSRYNLTSG---------SKYP-TELRIEKFYPPYFD 172 (286)
Q Consensus 133 LpDGrVlv~GG~~~~~~~~~~~---------~~~p-~~~~vE~y~Ppyl~ 172 (286)
-+++.|+++||...-.++..+| ...| +.++|+.+.|..-|
T Consensus 241 ~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 241 RPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp SSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred cCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 6899999999965432222211 1233 46788888886543
No 64
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=53.77 E-value=93 Score=29.05 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=40.7
Q ss_pred ceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCC-CCccceeeEEcCCCcEEEeCCCC
Q 043381 69 EMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSK-PRMCHSTSVVLPDGKILVAGSNP 145 (286)
Q Consensus 69 ~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~-~R~yHS~A~LLpDGrVlv~GG~~ 145 (286)
..+.|.||++++.-=..... .......+|-.+ .|++|+....... .....+..+.|+||++++.-...
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~-------~~~~~~~~~S~D--~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~ 218 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAG-------GRVSSAIIYSDD--SGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDN 218 (351)
T ss_pred CeEEecCCcEEEEEEEEcCC-------CCEEEEEEEECC--CCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeC
Confidence 45888899987653211100 011233455443 3669987554443 45567788889999999875543
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.43 E-value=96 Score=29.13 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=51.4
Q ss_pred cCcEEEEEecCCCCCeEee--cCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcC
Q 043381 41 LQDCGRIEITNKSATWQRE--MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELT 118 (286)
Q Consensus 41 ~~s~~~id~~~~~~~W~~~--~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a 118 (286)
.....+||+. +.+|... . -..-+ ..+..-+++-++++|.=+ .. ......-..||.++. +|+.+.
T Consensus 15 C~~lC~yd~~--~~qW~~~g~~-i~G~V--~~l~~~~~~~Llv~G~ft-~~-----~~~~~~la~yd~~~~---~w~~~~ 80 (281)
T PF12768_consen 15 CPGLCLYDTD--NSQWSSPGNG-ISGTV--TDLQWASNNQLLVGGNFT-LN-----GTNSSNLATYDFKNQ---TWSSLG 80 (281)
T ss_pred CCEEEEEECC--CCEeecCCCC-ceEEE--EEEEEecCCEEEEEEeeE-EC-----CCCceeEEEEecCCC---eeeecC
Confidence 3444578876 5899965 4 22222 223333555555556321 11 112234569999999 999877
Q ss_pred CC---CCCCccceeeEEcCCC-cEEEeCCC
Q 043381 119 PT---SKPRMCHSTSVVLPDG-KILVAGSN 144 (286)
Q Consensus 119 ~~---~~~R~yHS~A~LLpDG-rVlv~GG~ 144 (286)
.. .++---....+...|+ +++++|..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRS 110 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEecee
Confidence 62 4665545555555566 57777764
No 66
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=52.92 E-value=59 Score=31.43 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCC--CCcccCCCccccccCcEEEEEecCCCCCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCc
Q 043381 14 IRAEVLICGGAKPE--AGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGW 91 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~--~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~ 91 (286)
..|+.|+||=...+ .+.. .....-|-+-+|+.+.. .-..+.+ ..-+-..|+..+--+||.|-.|=...|--|-
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd---~~~~~NL~sphR~~~l~-gv~iR~V-asG~~aaH~vli~megk~~~wGRNekGQLGh 92 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRD---GAMEGNLVSPHRLRPLV-GVNIRFV-ASGCAAAHCVLIDMEGKCYTWGRNEKGQLGH 92 (443)
T ss_pred CCccEEEeccchhhhhcccc---cccccccccceeccccc-cceEEEE-ecccchhhEEEEecccceeecccCccCccCc
Confidence 47899999876421 1111 11112234445555431 1112222 1122345666666799999887766554443
Q ss_pred cCCCCCCCccEEecCCCCCCCceE----EcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEe
Q 043381 92 NFATDPNTTPVLYEPNDPINERFS----ELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFY 167 (286)
Q Consensus 92 ~~~~~~~~~~e~YdP~t~~g~~wt----~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~ 167 (286)
++ +---+.+ ++. ...-+..+-..|.+-+|-.+|.||..|=|..+.+... ....|+|+
T Consensus 93 gD---------~k~~e~P---tvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlg-------n~~~~v~s 153 (443)
T KOG1427|consen 93 GD---------MKQRERP---TVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLG-------NAKNEVES 153 (443)
T ss_pred cc---------hhhccCC---chhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccc-------cccccccc
Confidence 31 0001122 222 1122333445566888899999999998776654321 12458888
Q ss_pred CCCCCCCCCCCCCceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCCcccccc----CCCcceEEeccee
Q 043381 168 PPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGV----SMGQRLLVLATKE 240 (286)
Q Consensus 168 Ppyl~~~~~~~RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~----n~~QR~v~L~~~~ 240 (286)
||-..-- -|.|+ .+..|..|+|-++.. ..+..+-|-..|---|.. ||+.-.|.|.+..
T Consensus 154 ~~~~~~~----~~~v~------~v~cga~ftv~l~~~-----~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 154 TPLPCVV----SDEVT------NVACGADFTVWLSST-----ESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred CCCcccc----Cccce------eeccccceEEEeecc-----cceeecCCccccccccCcchhhccccccceeeeec
Confidence 8875421 23333 368999999988753 346677777777666664 6777777776643
No 67
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=51.01 E-value=1.1e+02 Score=29.29 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=59.0
Q ss_pred cCcEEEEEecCCCCCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCC
Q 043381 41 LQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPT 120 (286)
Q Consensus 41 ~~s~~~id~~~~~~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~ 120 (286)
.....++||. +++-+..++...-.-|.-++=|||..+|+-+.. + -..+||++-.-++|..-..+
T Consensus 82 ~gaiGhLdP~--tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-a-------------I~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 82 TGAIGHLDPA--TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-A-------------IGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred cccceecCCC--CCceEEEecCCCCCCceEEECCCCCeeEecCcc-e-------------eEEecCcccceEEeeccccc
Confidence 4555667765 345555588888777888899999999987753 1 24678877644466655444
Q ss_pred CCCCccceeeEEcCCCcEEEeCCC
Q 043381 121 SKPRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 121 ~~~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
.-.-+ -++++-++|+++..|-.
T Consensus 146 a~~nl--et~vfD~~G~lWFt~q~ 167 (353)
T COG4257 146 ADANL--ETAVFDPWGNLWFTGQI 167 (353)
T ss_pred CCCcc--cceeeCCCccEEEeecc
Confidence 44443 36889999999998873
No 68
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=49.73 E-value=81 Score=27.81 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=46.3
Q ss_pred cEEEEEecCCCCCeEeecCCCCccccceEEe-CCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCC
Q 043381 43 DCGRIEITNKSATWQREMMPSPRVMGEMLLL-PTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTS 121 (286)
Q Consensus 43 s~~~id~~~~~~~W~~~~M~~~R~~~~~v~L-pdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~ 121 (286)
...++|+.. ..-+....+. ...+++. +||++||..... -.++|+.+. +++.+....
T Consensus 23 ~i~~~~~~~--~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~---------------~~~~d~~~g---~~~~~~~~~ 79 (246)
T PF08450_consen 23 RIYRVDPDT--GEVEVIDLPG---PNGMAFDRPDGRLYVADSGG---------------IAVVDPDTG---KVTVLADLP 79 (246)
T ss_dssp EEEEEETTT--TEEEEEESSS---EEEEEEECTTSEEEEEETTC---------------EEEEETTTT---EEEEEEEEE
T ss_pred EEEEEECCC--CeEEEEecCC---CceEEEEccCCEEEEEEcCc---------------eEEEecCCC---cEEEEeecc
Confidence 445666542 3333224444 3334555 899999987632 246799998 888766552
Q ss_pred ---CCCccceeeEEcCCCcEEEeCCCCC
Q 043381 122 ---KPRMCHSTSVVLPDGKILVAGSNPH 146 (286)
Q Consensus 122 ---~~R~yHS~A~LLpDGrVlv~GG~~~ 146 (286)
.+...---.+..+||++|+.-....
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~ 107 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGG 107 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCB
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCC
Confidence 1222222356679999999865433
No 69
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=48.72 E-value=2.2e+02 Score=26.16 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCC
Q 043381 44 CGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSK 122 (286)
Q Consensus 44 ~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~ 122 (286)
...|++. .+..++.. ..+.+-.-...+.-|||+.+++.....+ ...+||.+++ |...+.......
T Consensus 59 i~~~~~~-~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~------------~v~v~~~~~~-g~~~~~~~~~~~ 124 (330)
T PRK11028 59 VLSYRIA-DDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNAN------------CVSVSPLDKD-GIPVAPIQIIEG 124 (330)
T ss_pred EEEEEEC-CCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCC------------eEEEEEECCC-CCCCCceeeccC
Confidence 3446665 24566644 2222222234567899986666543211 2346776543 111122211111
Q ss_pred CCccceeeEEcCCCcEEEeCC
Q 043381 123 PRMCHSTSVVLPDGKILVAGS 143 (286)
Q Consensus 123 ~R~yHS~A~LLpDGrVlv~GG 143 (286)
...-|+ +.+-|||+.+.+.+
T Consensus 125 ~~~~~~-~~~~p~g~~l~v~~ 144 (330)
T PRK11028 125 LEGCHS-ANIDPDNRTLWVPC 144 (330)
T ss_pred CCcccE-eEeCCCCCEEEEee
Confidence 223465 44678997665433
No 70
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=44.67 E-value=1.8e+02 Score=24.90 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=45.8
Q ss_pred ceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEEEEcCCCCC
Q 043381 181 SIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAK 260 (286)
Q Consensus 181 ~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~~~ 260 (286)
.|.-...|..++.|+.|++++-..+. -....+|.+...+........ ....++ +.+| .+++++|
T Consensus 137 EIvPl~~P~~l~~g~~~~~~vl~~Gk--Pl~~a~V~~~~~~~~~~~~~~-----~~~~~T---D~~G--~~~~~~~---- 200 (215)
T PF10670_consen 137 EIVPLTNPYKLKAGDPLPFQVLFDGK--PLAGAEVEAFSPGGWYDVEHE-----AKTLKT---DANG--RATFTLP---- 200 (215)
T ss_pred EEEECcCcccccCCCEEEEEEEECCe--EcccEEEEEEECCCccccccc-----eEEEEE---CCCC--EEEEecC----
Confidence 44443337778999999888765443 123478888888776544333 222222 2222 5666655
Q ss_pred cCCCcceEEEEEc
Q 043381 261 IAPPSFYLLFVVY 273 (286)
Q Consensus 261 vappG~YmLFv~~ 273 (286)
-||.|||-+.+
T Consensus 201 --~~G~wli~a~~ 211 (215)
T PF10670_consen 201 --RPGLWLIRASH 211 (215)
T ss_pred --CCEEEEEEEEE
Confidence 47999998875
No 71
>PTZ00420 coronin; Provisional
Probab=40.11 E-value=4.2e+02 Score=27.46 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=30.0
Q ss_pred CcEEEEEecCCCCCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCC
Q 043381 42 QDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDP 109 (286)
Q Consensus 42 ~s~~~id~~~~~~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~ 109 (286)
.++.++|+......++.. ......+...-|||+++++++.+. ...+||+.+.
T Consensus 148 gtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~D~-------------~IrIwD~Rsg 199 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCVGK-------------HMHIIDPRKQ 199 (568)
T ss_pred CeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEecCC-------------EEEEEECCCC
Confidence 345567775422222221 122233445668999999877541 3579999875
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=39.70 E-value=61 Score=30.58 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=48.7
Q ss_pred ceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCC
Q 043381 69 EMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSR 148 (286)
Q Consensus 69 ~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~ 148 (286)
.+-+-+||+++.+--.. +.-+||+. .|..+..-..|..-- +|.|-|+-.+||+||+.--.
T Consensus 189 SlEvs~dG~ilTia~gs--------------sV~Fwdak-----sf~~lKs~k~P~nV~-SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGS--------------SVKFWDAK-----SFGLLKSYKMPCNVE-SASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred ceeeccCCCEEEEecCc--------------eeEEeccc-----cccceeeccCccccc-cccccCCCceEEecCcceEE
Confidence 44577899999874322 23567764 456666666666555 48899999999999987765
Q ss_pred cccCCCCCCCcccEEEEE
Q 043381 149 YNLTSGSKYPTELRIEKF 166 (286)
Q Consensus 149 ~~~~~~~~~p~~~~vE~y 166 (286)
+.| .|.|--.+|.|
T Consensus 249 ~kf----Dy~TgeEi~~~ 262 (334)
T KOG0278|consen 249 YKF----DYNTGEEIGSY 262 (334)
T ss_pred EEE----eccCCceeeec
Confidence 544 34344455553
No 73
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=37.52 E-value=2.2e+02 Score=22.97 Aligned_cols=22 Identities=45% Similarity=0.502 Sum_probs=13.6
Q ss_pred eEEEEEEcCCCCCcCCCcceEEEEE
Q 043381 248 IFQVSVTAPPTAKIAPPSFYLLFVV 272 (286)
Q Consensus 248 ~~~~~v~~P~~~~vappG~YmLFv~ 272 (286)
.-+|.|+.|++ ||=|.|-|-|-
T Consensus 94 ~~tv~V~spa~---A~VG~y~l~v~ 115 (118)
T PF00868_consen 94 SVTVSVTSPAN---APVGRYKLSVE 115 (118)
T ss_dssp EEEEEEE--TT---S--EEEEEEEE
T ss_pred EEEEEEECCCC---CceEEEEEEEE
Confidence 46777888876 67799998764
No 74
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=36.76 E-value=2.5e+02 Score=26.84 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=38.9
Q ss_pred EEEEEecCCCCCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEE-cCCCCC
Q 043381 44 CGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSE-LTPTSK 122 (286)
Q Consensus 44 ~~~id~~~~~~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~-~a~~~~ 122 (286)
...+|+.+....|+...+. .|.....++ -+|+||+.... | .-.++|+.+.. -.|+. +. -
T Consensus 306 l~ald~~tG~~~W~~~~~~-~~~~~sp~v-~~g~l~v~~~~--G------------~l~~ld~~tG~-~~~~~~~~---~ 365 (394)
T PRK11138 306 VYALDTRGGVELWSQSDLL-HRLLTAPVL-YNGYLVVGDSE--G------------YLHWINREDGR-FVAQQKVD---S 365 (394)
T ss_pred EEEEECCCCcEEEcccccC-CCcccCCEE-ECCEEEEEeCC--C------------EEEEEECCCCC-EEEEEEcC---C
Confidence 3345554444568654322 234444344 48888874331 1 12457877641 14543 21 1
Q ss_pred CCccceeeEEcCCCcEEEeCC
Q 043381 123 PRMCHSTSVVLPDGKILVAGS 143 (286)
Q Consensus 123 ~R~yHS~A~LLpDGrVlv~GG 143 (286)
...+.+-++. |++|||..-
T Consensus 366 ~~~~s~P~~~--~~~l~v~t~ 384 (394)
T PRK11138 366 SGFLSEPVVA--DDKLLIQAR 384 (394)
T ss_pred CcceeCCEEE--CCEEEEEeC
Confidence 1234444444 889888744
No 75
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=36.04 E-value=1.5e+02 Score=21.65 Aligned_cols=70 Identities=19% Similarity=0.349 Sum_probs=29.8
Q ss_pred ecCCEEEEEEEeccc-ccccCcEEEEEEcC-CccccccCCCcceEEecceeeeecCCc-eEEEEEEcCCCCCcCCCcceE
Q 043381 192 KYGQNFVIQFKLDEL-EVSLNDLKVTMYAP-PFTTHGVSMGQRLLVLATKELIDVGSG-IFQVSVTAPPTAKIAPPSFYL 268 (286)
Q Consensus 192 ~~g~~~~v~~~~~~~-~~~~~~~~v~L~~~-~~~THs~n~~QR~v~L~~~~~~~~g~~-~~~~~v~~P~~~~vappG~Ym 268 (286)
..|++++++++.... .......+++|-.| |+. ...-.++.-.|+- |.. ..+++|+.|.+ ++||-|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~--~~~~~~~~~~l~p------G~s~~~~~~V~vp~~---a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT--VSASPASVPSLPP------GESVTVTFTVTVPAD---AAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE-----EEEEE--B-T------TSEEEEEEEEEE-TT-----SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc--ccCCccccccCCC------CCEEEEEEEEECCCC---CCCceEE
Confidence 467766666554221 01123456666656 333 1112233333332 221 35777788876 6799998
Q ss_pred EEEE
Q 043381 269 LFVV 272 (286)
Q Consensus 269 LFv~ 272 (286)
|-+.
T Consensus 71 v~~~ 74 (78)
T PF10633_consen 71 VTVT 74 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8664
No 76
>PTZ00421 coronin; Provisional
Probab=33.30 E-value=5.2e+02 Score=26.10 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=19.9
Q ss_pred EEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCC
Q 043381 71 LLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDP 109 (286)
Q Consensus 71 v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~ 109 (286)
..-|||+++++++.+. ..-+||+.+.
T Consensus 175 a~spdG~lLatgs~Dg-------------~IrIwD~rsg 200 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDK-------------KLNIIDPRDG 200 (493)
T ss_pred EEECCCCEEEEecCCC-------------EEEEEECCCC
Confidence 4568999999988652 3469999876
No 77
>PTZ00421 coronin; Provisional
Probab=32.14 E-value=3.3e+02 Score=27.56 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=29.7
Q ss_pred EEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCC
Q 043381 71 LLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGS 143 (286)
Q Consensus 71 v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG 143 (286)
+..+++..+++.|..... --+.-+||..+.. +.......- . .........-+|++++++||
T Consensus 218 ~w~~~~~~ivt~G~s~s~---------Dr~VklWDlr~~~-~p~~~~~~d-~-~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQ---------QRQIMLWDTRKMA-SPYSTVDLD-Q-SSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEcCCCCeEEEEecCCCC---------CCeEEEEeCCCCC-CceeEeccC-C-CCceEEEEEcCCCCEEEEEE
Confidence 456777777766654111 1145689986531 122221100 0 01112233457898888776
No 78
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=31.09 E-value=1.2e+02 Score=26.34 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=37.6
Q ss_pred EEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCC
Q 043381 71 LLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 71 v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
.--|+|+.++++|... ..| ..++||-.+ ++.+....... .+....-||||-+++...
T Consensus 107 ~wsP~G~~l~~~g~~n-~~G---------~l~~wd~~~-----~~~i~~~~~~~--~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 107 SWSPDGRFLVLAGFGN-LNG---------DLEFWDVRK-----KKKISTFEHSD--ATDVEWSPDGRYLATATT 163 (194)
T ss_pred EECCCCCEEEEEEccC-CCc---------EEEEEECCC-----CEEeeccccCc--EEEEEEcCCCCEEEEEEe
Confidence 4569999999999752 211 457999874 34444333333 345677899999998763
No 79
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=30.24 E-value=3.7e+02 Score=26.50 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=43.1
Q ss_pred eEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCc-----eEEcCCCCCCCccceee
Q 043381 56 WQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINER-----FSELTPTSKPRMCHSTS 130 (286)
Q Consensus 56 W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~-----wt~~a~~~~~R~yHS~A 130 (286)
|+..+.+..+....+...+||.++++|... ..-++ ++.|+. |..+.-........+ .
T Consensus 272 W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G--~l~~S---------------~d~G~~~~~~~f~~~~~~~~~~~l~~-v 333 (398)
T PLN00033 272 WQPHNRASARRIQNMGWRADGGLWLLTRGG--GLYVS---------------KGTGLTEEDFDFEEADIKSRGFGILD-V 333 (398)
T ss_pred eEEecCCCccceeeeeEcCCCCEEEEeCCc--eEEEe---------------cCCCCcccccceeecccCCCCcceEE-E
Confidence 888877777777777788999999987642 11111 222333 444332212222333 4
Q ss_pred EEcCCCcEEEeCCCC
Q 043381 131 VVLPDGKILVAGSNP 145 (286)
Q Consensus 131 ~LLpDGrVlv~GG~~ 145 (286)
...+|+.++++|...
T Consensus 334 ~~~~d~~~~a~G~~G 348 (398)
T PLN00033 334 GYRSKKEAWAAGGSG 348 (398)
T ss_pred EEcCCCcEEEEECCC
Confidence 456799999998753
No 80
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=29.75 E-value=2.6e+02 Score=25.17 Aligned_cols=79 Identities=19% Similarity=0.130 Sum_probs=39.2
Q ss_pred eeecCCEEEEEEEecccc-cccCcEEEEEEcC-CccccccCCCcceEEecceeeeecCC-----------ceEEEEEEcC
Q 043381 190 MVKYGQNFVIQFKLDELE-VSLNDLKVTMYAP-PFTTHGVSMGQRLLVLATKELIDVGS-----------GIFQVSVTAP 256 (286)
Q Consensus 190 ~~~~g~~~~v~~~~~~~~-~~~~~~~v~L~~~-~~~THs~n~~QR~v~L~~~~~~~~g~-----------~~~~~~v~~P 256 (286)
+|+.|+++++........ .-.+-+.+=|-+- +...-.-..+++-..+.-......+. .....++++|
T Consensus 64 ~V~AG~~I~f~w~~~~~~~~H~GP~~~Yma~~~~~~~~~d~~~~~WFKI~e~g~~~~~~~~~W~~~~l~~~~~~~~~~IP 143 (218)
T PF03443_consen 64 TVAAGDTITFEWHHGGWPHSHPGPVLVYMAKCPGDCATWDGSGLDWFKIYEDGLDDGGGKPGWATDKLIANNGSWTFTIP 143 (218)
T ss_dssp EEETTSEEEEEEESST-ETTSSS-EEEEEEE-TSTTTT--CCCCEEEEEEEE-BCTTSSE-BBCCHHHHTTTCEEEEE--
T ss_pred EeCCCCEEEEEEEecccCcCCCcceEEEeecCCcccccccCCCCeEEEEeeecccCCCCccceecchhhccCCceEEEeC
Confidence 588999999988732110 0124455555554 23222223344555543222111110 1247889999
Q ss_pred CCCCcCCCcceEEEE
Q 043381 257 PTAKIAPPSFYLLFV 271 (286)
Q Consensus 257 ~~~~vappG~YmLFv 271 (286)
++ +|||.|+|-.
T Consensus 144 ~~---l~~G~YLlR~ 155 (218)
T PF03443_consen 144 KN---LPPGQYLLRH 155 (218)
T ss_dssp TT---BBSEEEEEEE
T ss_pred CC---CCCCCceEEe
Confidence 77 8999999853
No 81
>PLN00181 protein SPA1-RELATED; Provisional
Probab=29.38 E-value=2.4e+02 Score=29.81 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=33.7
Q ss_pred EEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCC-CCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCC
Q 043381 71 LLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPI-NERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPH 146 (286)
Q Consensus 71 v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~-g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~ 146 (286)
+...|+..+++++.+. +.-+||..+.. +..|..+....--........+-++|+.+++|+.+.
T Consensus 667 v~f~~~~~lvs~s~D~-------------~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 667 VRFVDSSTLVSSSTDN-------------TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred EEEeCCCEEEEEECCC-------------EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 4445888888888652 34688876431 112322211111011112344667899999998533
No 82
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=28.92 E-value=1.3e+02 Score=31.05 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=19.4
Q ss_pred CCccceeeEEcCCCcEEEeCCCC
Q 043381 123 PRMCHSTSVVLPDGKILVAGSNP 145 (286)
Q Consensus 123 ~R~yHS~A~LLpDGrVlv~GG~~ 145 (286)
+-.|--+..|+||||-|++||..
T Consensus 464 rdnyiRSckL~pdgrtLivGGea 486 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEA 486 (705)
T ss_pred cccceeeeEecCCCceEEecccc
Confidence 44577789999999999999973
No 83
>PRK09774 fec operon regulator FecR; Reviewed
Probab=28.59 E-value=1.4e+02 Score=28.14 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=39.8
Q ss_pred eeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCCCCCC-CCCC-CCCceeecCCCceeecCCEEEEEEE
Q 043381 129 TSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDE-SFAS-YRPSIVSKFKGKMVKYGQNFVIQFK 202 (286)
Q Consensus 129 ~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Ppyl~~-~~~~-~RP~i~~~~~p~~~~~g~~~~v~~~ 202 (286)
-.+.||||..+....++--.+.+.. .+.+|+.-.=.-+|. ..+. .||-+.....-..--.|..|.|...
T Consensus 119 r~v~L~DGS~v~Ln~~S~l~~~~~~-----~~R~v~L~~Gea~F~Va~d~~~rPF~V~t~~~~v~vlGT~F~V~~~ 189 (319)
T PRK09774 119 SRQRLEDGSLLTLNTQSAVDVRFDA-----HQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTALGTEFTVRQQ 189 (319)
T ss_pred EEEEcCCCCEEEEcCCCeEEEeecC-----CeeEEEEeccEEEEEEcCCCCCCCEEEEeCCcEEEEeeeEEEEEEc
Confidence 3677999999998887665444321 122233322222232 2234 4999988732233458889998764
No 84
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.45 E-value=3.6e+02 Score=25.80 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred EEEEEecCCCCCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCC
Q 043381 44 CGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKP 123 (286)
Q Consensus 44 ~~~id~~~~~~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~ 123 (286)
..+||+......=....=+...-++-++..+||+.|.+-=.+. ..+.+ ---+||.. . ++..+.....-
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~-~~g~G-------~IgVyd~~-~---~~~ri~E~~s~ 97 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY-ETGRG-------VIGVYDAA-R---GYRRIGEFPSH 97 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc-CCCcE-------EEEEEECc-C---CcEEEeEecCC
Q ss_pred CccceeeEEcCCCcEEEeC
Q 043381 124 RMCHSTSVVLPDGKILVAG 142 (286)
Q Consensus 124 R~yHS~A~LLpDGrVlv~G 142 (286)
=..-.-.+|+|||+-||++
T Consensus 98 GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 98 GIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CcChhhEEEcCCCCEEEEE
No 85
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=27.40 E-value=2.1e+02 Score=19.60 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=26.7
Q ss_pred CCceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCC
Q 043381 179 RPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPP 221 (286)
Q Consensus 179 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~ 221 (286)
.|+|+.- +..+..|+.++|+=...+ ....++.+.+.+
T Consensus 1 kP~l~~~--~~~v~~g~~~~l~C~~~~----~p~~~~~w~~~~ 37 (80)
T PF13895_consen 1 KPVLSSS--PQSVEEGDSVTLTCSVSG----NPPPQVQWYKNG 37 (80)
T ss_dssp --EEEEE--SSEEETTSEEEEEEEEES----SSSSEEEEEETT
T ss_pred CcEEEcc--ceEEeCCCcEEEEEEEEc----ccceeeeeeeee
Confidence 3888877 888999999999876543 123678888765
No 86
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.83 E-value=1.7e+02 Score=29.69 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=41.7
Q ss_pred ceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCC
Q 043381 69 EMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSR 148 (286)
Q Consensus 69 ~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~ 148 (286)
.+++-.||+||..|....+.-+.++..+..-..+.|.|.....+....+++ ..|+..+|-.+|+||..|.+....
T Consensus 188 svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~-----G~dh~i~lt~~G~vy~~Gs~qkgq 262 (476)
T COG5184 188 SVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAA-----GADHLIALTNEGKVYGWGSNQKGQ 262 (476)
T ss_pred EEEEccCCcEEEecCccccccccccccccccceeeeeeeecCchheeeecc-----CCceEEEEecCCcEEEecCCcccc
Confidence 456778999999998653332222111222223344444332123333333 234467778999999888876643
No 87
>PTZ00420 coronin; Provisional
Probab=26.37 E-value=3e+02 Score=28.53 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=16.9
Q ss_pred CCCcEEEEcCccCCCCCccCCCCCCCccEEecCCC
Q 043381 74 PTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPND 108 (286)
Q Consensus 74 pdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t 108 (286)
+|++.++++|.+... ..+.-+||...
T Consensus 224 ~d~~~IlTtG~d~~~---------~R~VkLWDlr~ 249 (568)
T PTZ00420 224 GDDNYILSTGFSKNN---------MREMKLWDLKN 249 (568)
T ss_pred CCCCEEEEEEcCCCC---------ccEEEEEECCC
Confidence 788888888865210 11356899774
No 88
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=25.75 E-value=1.5e+02 Score=28.59 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=36.7
Q ss_pred EEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEE----cCCCcEEEeCCCCC
Q 043381 71 LLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVV----LPDGKILVAGSNPH 146 (286)
Q Consensus 71 v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~L----LpDGrVlv~GG~~~ 146 (286)
--.|||..|+.||.+.- -.+|+-..+..+-|... .||.|++ ..|+++++.-|.+.
T Consensus 54 ~F~P~gs~~aSgG~Dr~-------------I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRA-------------IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred EECCCCCeEeecCCcce-------------EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCCc
Confidence 45799999999998742 23554333322267654 7888886 57888887766444
No 89
>PF03067 Chitin_bind_3: Chitin binding domain; InterPro: IPR004302 Entomopoxviruses are a class of insect viruses whose virions are embedded in cytoplasmic occlusion bodies. The major component of these protective complexes is a protein called spheroidin/spindolin. Intermolecular disulphide bonds have been shown to play major roles in the formation and structure of these viral occlusion bodies [] some of which are spindle body proteins.; GO: 0019028 viral capsid; PDB: 3UAM_E 2XWX_A 2LHS_A 2BEM_B 2BEN_B 4A02_A.
Probab=25.37 E-value=2.5e+02 Score=24.00 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=36.2
Q ss_pred CceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcce-----EEec-ceeee---e----cCCceEEEEEE
Q 043381 188 GKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRL-----LVLA-TKELI---D----VGSGIFQVSVT 254 (286)
Q Consensus 188 p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~-----v~L~-~~~~~---~----~g~~~~~~~v~ 254 (286)
...|+.|+.|+|++.....= ..+-.++.|-++++ +-+++. +++. +.... . .....++++|+
T Consensus 78 ~~~v~~G~~i~~~~~~ta~H-~~g~~~~~itk~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 151 (183)
T PF03067_consen 78 KTTVTPGQTIDFKWNITAPH-GTGYFEFYITKPGW-----DPTEPCLTWDDLELIPFCQYDNPGQDPGPADQTNYTMSVT 151 (183)
T ss_dssp -EEEESE-EEEEEEEESS-S--EEEEEEEEB-TT-------TTS----GGGBESSESEEEEEEEEHHHSSSEEEE--EEE
T ss_pred ceeeCCCCeEEEEEEEeccc-CCeeEEEEEcCCCC-----CcCccccchhhccccCceeecCCCcCcCCCCCceEEEEEE
Confidence 34578898888887754320 13455666666555 455552 2221 11100 0 12224666999
Q ss_pred cCCCCCcCCCcceEEEEEc
Q 043381 255 APPTAKIAPPSFYLLFVVY 273 (286)
Q Consensus 255 ~P~~~~vappG~YmLFv~~ 273 (286)
+|.+ ..|+..|+.+-
T Consensus 152 lP~~----~~g~~Vl~~~W 166 (183)
T PF03067_consen 152 LPDG----RCGHCVLQWRW 166 (183)
T ss_dssp E-TT------EEEEEEEEE
T ss_pred CCCC----CcCCEEEEEEE
Confidence 9988 89999998874
No 90
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=25.11 E-value=5.3e+02 Score=23.55 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=45.0
Q ss_pred CcEEEEEecCCCCCeEee-cCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCC-CCCCCceEEcCC
Q 043381 42 QDCGRIEITNKSATWQRE-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPN-DPINERFSELTP 119 (286)
Q Consensus 42 ~s~~~id~~~~~~~W~~~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~-t~~g~~wt~~a~ 119 (286)
++...||+.. +.+++.. ..+....-+...+-|||+.|.+++... .....|+.. +. +++....
T Consensus 12 ~~I~~~~~~~-~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~------------~~i~~~~~~~~g---~l~~~~~ 75 (330)
T PRK11028 12 QQIHVWNLNH-EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE------------FRVLSYRIADDG---ALTFAAE 75 (330)
T ss_pred CCEEEEEECC-CCceeeeeEEecCCCCccEEECCCCCEEEEEECCC------------CcEEEEEECCCC---ceEEeee
Confidence 4556778743 4677654 444333344556779999776654321 123456664 33 5655443
Q ss_pred CCCCCccceeeEEcCCCcEEEeCC
Q 043381 120 TSKPRMCHSTSVVLPDGKILVAGS 143 (286)
Q Consensus 120 ~~~~R~yHS~A~LLpDGrVlv~GG 143 (286)
...+..-+. ..+.|||+.+.+.+
T Consensus 76 ~~~~~~p~~-i~~~~~g~~l~v~~ 98 (330)
T PRK11028 76 SPLPGSPTH-ISTDHQGRFLFSAS 98 (330)
T ss_pred ecCCCCceE-EEECCCCCEEEEEE
Confidence 333323333 44568888555544
No 91
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=25.05 E-value=2.8e+02 Score=20.28 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=38.4
Q ss_pred CceeecCCEEEEEEEeccc-ccccCcEEEEEEcCCccccccCCCcceE-EecceeeeecCCceEEEEEEcCCCCCcCCCc
Q 043381 188 GKMVKYGQNFVIQFKLDEL-EVSLNDLKVTMYAPPFTTHGVSMGQRLL-VLATKELIDVGSGIFQVSVTAPPTAKIAPPS 265 (286)
Q Consensus 188 p~~~~~g~~~~v~~~~~~~-~~~~~~~~v~L~~~~~~THs~n~~QR~v-~L~~~~~~~~g~~~~~~~v~~P~~~~vappG 265 (286)
|..+..|+.++|++..... ........|.+..-+... +++.| .|.. | ...+++++..+. .+|
T Consensus 12 ~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----~~~~i~~L~~------g-~~~~v~~~~~~~----~~G 75 (101)
T PF07705_consen 12 PSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV-----STVTIPSLAP------G-ESETVTFTWTPP----SPG 75 (101)
T ss_dssp -SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----EEEEESEB-T------T-EEEEEEEEEE-S----S-C
T ss_pred CCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee-----ccEEECCcCC------C-cEEEEEEEEEeC----CCC
Confidence 8889999988887764211 012345677777666655 44444 3322 2 234555554433 678
Q ss_pred ceEEEEEc
Q 043381 266 FYLLFVVY 273 (286)
Q Consensus 266 ~YmLFv~~ 273 (286)
.|-|.++.
T Consensus 76 ~~~i~~~i 83 (101)
T PF07705_consen 76 SYTIRVVI 83 (101)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 88777764
No 92
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=24.72 E-value=3.6e+02 Score=22.92 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=46.2
Q ss_pred cEEEEEecCCCCCeEe-e-cCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCC
Q 043381 43 DCGRIEITNKSATWQR-E-MMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPT 120 (286)
Q Consensus 43 s~~~id~~~~~~~W~~-~-~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~ 120 (286)
....+|..+.+..|+. . .-+..+....+....+|+.++++.... ....+|+.+.. ..|+.-...
T Consensus 87 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------~l~~~d~~tG~-~~w~~~~~~ 152 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG-------------KLVALDPKTGK-LLWKYPVGE 152 (238)
T ss_dssp EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS-------------EEEEEETTTTE-EEEEEESST
T ss_pred eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC-------------cEEEEecCCCc-EEEEeecCC
Confidence 5667887776788994 4 333434333333333455555554321 23588888651 167653332
Q ss_pred CC-CCcc-----ceeeEEcCCCcEEEeCCCC
Q 043381 121 SK-PRMC-----HSTSVVLPDGKILVAGSNP 145 (286)
Q Consensus 121 ~~-~R~y-----HS~A~LLpDGrVlv~GG~~ 145 (286)
.. .-.+ .....++.+|+|+++.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred CCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 11 1101 1245556678999988754
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=24.54 E-value=1.5e+02 Score=30.53 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=30.7
Q ss_pred EEEecCCCCCeEee--c-CCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCC
Q 043381 46 RIEITNKSATWQRE--M-MPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDP 109 (286)
Q Consensus 46 ~id~~~~~~~W~~~--~-M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~ 109 (286)
++|+..+.++--+. + +...-+.-..-++|||+-||+||... +..|||-.++
T Consensus 444 VWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas-------------tlsiWDLAap 497 (705)
T KOG0639|consen 444 VWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS-------------TLSIWDLAAP 497 (705)
T ss_pred EeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc-------------eeeeeeccCC
Confidence 45655543333222 2 22333444457899999999999631 4468887776
No 94
>PF09917 DUF2147: Uncharacterized protein conserved in bacteria (DUF2147); InterPro: IPR019223 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.87 E-value=91 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=23.6
Q ss_pred cEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCC
Q 043381 101 PVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGS 143 (286)
Q Consensus 101 ~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG 143 (286)
-.+|||+.. +.||+...|..++++-+-|.
T Consensus 72 G~iydP~~G--------------ktY~~~i~l~~~~~L~v~G~ 100 (114)
T PF09917_consen 72 GKIYDPEDG--------------KTYSAKITLSGNDTLKVRGC 100 (114)
T ss_pred cEEEeCCCC--------------CEEEEEEEECCCCEEEEEEE
Confidence 579999986 77999888877777777775
No 95
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=23.86 E-value=2.7e+02 Score=20.83 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=45.1
Q ss_pred CCceeecCCCc--eeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEEEEcC
Q 043381 179 RPSIVSKFKGK--MVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAP 256 (286)
Q Consensus 179 RP~i~~~~~p~--~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P 256 (286)
||+|++-..+. .+..|+++++.-...+ . .-.+...+-+..-+ +.| +.+.. .+ .+|++.
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g----~-~p~i~W~kng~~l~----~~~-~~~~~-----~~---~~L~I~-- 60 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEG----Q-ATYIWWVNNGSLLV----PPR-LQLSN-----DN---RTLTFN-- 60 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCC----C-CCEEEEEECCEECC----CCC-EEEeC-----CC---CEEEEC--
Confidence 78997652121 5888999998876443 2 55677777654322 122 11111 11 244442
Q ss_pred CCCCcCCCcceEEEEEc-CC-CCCccEEEEe
Q 043381 257 PTAKIAPPSFYLLFVVY-RQ-VPSPGTWVQI 285 (286)
Q Consensus 257 ~~~~vappG~YmLFv~~-~G-vPS~a~~V~i 285 (286)
+-..-=-|.|.-.+.| -| +=|...++.|
T Consensus 61 -~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 61 -NVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred -cCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 1122234888888887 34 3344554444
No 96
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=23.82 E-value=4e+02 Score=26.68 Aligned_cols=64 Identities=11% Similarity=0.208 Sum_probs=36.1
Q ss_pred CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCCCCCeEeecCCCCccc-cceEEeCCCcEEEEcCccCCCCCcc
Q 043381 14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVM-GEMLLLPTGDVLIINGAKKGTAGWN 92 (286)
Q Consensus 14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R~~-~~~v~LpdG~VlvvGG~~~g~ag~~ 92 (286)
.+++.|+.|+.+ .++-..|+....+..+ +..-+.+ -+...-|||+.+..|--+ |
T Consensus 125 p~g~~l~tGsGD----------------~TvR~WD~~TeTp~~t---~KgH~~WVlcvawsPDgk~iASG~~d-g----- 179 (480)
T KOG0271|consen 125 PTGSRLVTGSGD----------------TTVRLWDLDTETPLFT---CKGHKNWVLCVAWSPDGKKIASGSKD-G----- 179 (480)
T ss_pred CCCceEEecCCC----------------ceEEeeccCCCCccee---ecCCccEEEEEEECCCcchhhccccC-C-----
Confidence 467777777754 2445567654222222 1111111 244467999998765543 2
Q ss_pred CCCCCCCccEEecCCCC
Q 043381 93 FATDPNTTPVLYEPNDP 109 (286)
Q Consensus 93 ~~~~~~~~~e~YdP~t~ 109 (286)
+-.+|||++.
T Consensus 180 -------~I~lwdpktg 189 (480)
T KOG0271|consen 180 -------SIRLWDPKTG 189 (480)
T ss_pred -------eEEEecCCCC
Confidence 3469999986
No 97
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=23.17 E-value=5.9e+02 Score=23.84 Aligned_cols=83 Identities=13% Similarity=0.269 Sum_probs=43.1
Q ss_pred cCcEEEEEecCCCCCeEee----cCCCC---c-cccceEEeCCCc-EEEEcCccCCCCCccCCCCCCCccEEecC--CCC
Q 043381 41 LQDCGRIEITNKSATWQRE----MMPSP---R-VMGEMLLLPTGD-VLIINGAKKGTAGWNFATDPNTTPVLYEP--NDP 109 (286)
Q Consensus 41 ~~s~~~id~~~~~~~W~~~----~M~~~---R-~~~~~v~LpdG~-VlvvGG~~~g~ag~~~~~~~~~~~e~YdP--~t~ 109 (286)
.++...|++...+..|+.. .++.. . .-+...+-|||+ +||.+-... +-.+|+- ++.
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~-------------sI~vf~~d~~~g 279 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN-------------SISVFDLDPATG 279 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT-------------EEEEEEECTTTT
T ss_pred CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC-------------EEEEEEEecCCC
Confidence 4566677776445566532 33322 2 344556888997 566554321 2346664 433
Q ss_pred CCCceEEcCC----CCCCCccceeeEEcCCCcEEEeCC
Q 043381 110 INERFSELTP----TSKPRMCHSTSVVLPDGKILVAGS 143 (286)
Q Consensus 110 ~g~~wt~~a~----~~~~R~yHS~A~LLpDGrVlv~GG 143 (286)
+.+.+.. -..|| . -.+-|||+.|++++
T Consensus 280 ---~l~~~~~~~~~G~~Pr---~-~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 280 ---TLTLVQTVPTGGKFPR---H-FAFSPDGRYLYVAN 310 (345)
T ss_dssp ---TEEEEEEEEESSSSEE---E-EEE-TTSSEEEEEE
T ss_pred ---ceEEEEEEeCCCCCcc---E-EEEeCCCCEEEEEe
Confidence 4443322 23355 2 33478999887765
No 98
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.00 E-value=7e+02 Score=24.19 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=56.6
Q ss_pred cCcEEEEEecCCCCCeEeecC-CCCc-----cccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCce
Q 043381 41 LQDCGRIEITNKSATWQREMM-PSPR-----VMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERF 114 (286)
Q Consensus 41 ~~s~~~id~~~~~~~W~~~~M-~~~R-----~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~w 114 (286)
.+....||+..-....+. ++ +.|| .-+...+-||||.+.+--. +|.....+.|-++. +.
T Consensus 76 ~d~V~v~D~~t~~~~~~i-~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-----------~p~~~V~VvD~~~~---kv 140 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADI-ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-----------SPSPAVGVVDLEGK---AF 140 (352)
T ss_pred CCEEEEEECccCcEEeEE-ccCCCchhhccCccceEEECCCCCEEEEecC-----------CCCCEEEEEECCCC---cE
Confidence 466778887542222222 33 3335 3345678999985544221 12235568888776 44
Q ss_pred EEcCCCCCCCccceee-------EEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeC--CCCCCCCCCCCCce
Q 043381 115 SELTPTSKPRMCHSTS-------VVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYP--PYFDESFASYRPSI 182 (286)
Q Consensus 115 t~~a~~~~~R~yHS~A-------~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~P--pyl~~~~~~~RP~i 182 (286)
.. ...+|-++|-.. ++-.||+.+...-+..+.. ...+.++|++ .++| .||..
T Consensus 141 v~--ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~---------~~~~~~vf~~~~~~v~-----~rP~~ 201 (352)
T TIGR02658 141 VR--MMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP---------KIKPTEVFHPEDEYLI-----NHPAY 201 (352)
T ss_pred EE--EEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce---------EEeeeeeecCCccccc-----cCCce
Confidence 32 122233332222 2234777777555433321 1346788888 5565 47743
No 99
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=22.84 E-value=3.4e+02 Score=20.44 Aligned_cols=76 Identities=21% Similarity=0.055 Sum_probs=47.1
Q ss_pred CceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEEEEcCCCC
Q 043381 180 PSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTA 259 (286)
Q Consensus 180 P~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~~ 259 (286)
|.|.+.. |..-..|++++|.=+.-. ....+|.+ + - ...++..++ . ..|++++|..
T Consensus 1 P~I~~i~-P~~g~pG~~VtI~G~gFg----~~~~~V~~---g---------~--~~a~v~s~s--d---t~I~~~VP~~- 55 (81)
T cd00604 1 PLIGSVG-PVMGKPGNTVTISGEGFG----STGGTVYF---G---------G--TAAEVLSWS--D---TSIVVEVPRV- 55 (81)
T ss_pred CeEeeEc-CCCCCCCCEEEEEEECCC----CCccEEEE---C---------C--EEEEEEEEC--C---CEEEEEeCCC-
Confidence 6787776 888889999888754221 11122211 1 1 223444432 2 5788999853
Q ss_pred CcCCCcceEEEEEc-CCCCCccEEE
Q 043381 260 KIAPPSFYLLFVVY-RQVPSPGTWV 283 (286)
Q Consensus 260 ~vappG~YmLFv~~-~GvPS~a~~V 283 (286)
++|.|-+.|.. +|.=|.+--.
T Consensus 56 ---~~g~~~i~V~~~~G~~Sn~~~f 77 (81)
T cd00604 56 ---APGNYNISVTTVDGVTSNGYNF 77 (81)
T ss_pred ---CCCceEEEEEECCCcccCcEeE
Confidence 68999999986 8887776443
No 100
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.74 E-value=1.5e+02 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=25.1
Q ss_pred CCccEEecCCCCCCCceEEcCCCCCCCccceeeEEc-CCCcEEEeCC
Q 043381 98 NTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVL-PDGKILVAGS 143 (286)
Q Consensus 98 ~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LL-pDGrVlv~GG 143 (286)
....-+||++.. +|+....-...-. .++.. .+.++|++|.
T Consensus 15 C~~lC~yd~~~~---qW~~~g~~i~G~V---~~l~~~~~~~Llv~G~ 55 (281)
T PF12768_consen 15 CPGLCLYDTDNS---QWSSPGNGISGTV---TDLQWASNNQLLVGGN 55 (281)
T ss_pred CCEEEEEECCCC---EeecCCCCceEEE---EEEEEecCCEEEEEEe
Confidence 344569999999 9998877633332 23333 3556666664
No 101
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=22.44 E-value=94 Score=18.33 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=16.5
Q ss_pred CccccceEEeCCCcEEEEcCcc
Q 043381 64 PRVMGEMLLLPTGDVLIINGAK 85 (286)
Q Consensus 64 ~R~~~~~v~LpdG~VlvvGG~~ 85 (286)
.+.+|.=+++-|++..++|++.
T Consensus 2 ~~~~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 2 DGVLHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred CCcEEeEEEEEcCCEEEEeCcc
Confidence 3556666677799988899975
No 102
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=22.40 E-value=4.8e+02 Score=25.19 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=52.3
Q ss_pred EeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcC-CCCCCCccceeeEEcCC
Q 043381 57 QREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELT-PTSKPRMCHSTSVVLPD 135 (286)
Q Consensus 57 ~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a-~~~~~R~yHS~A~LLpD 135 (286)
...+|+..=+|.+ ..-|.|+....||-++ .+.+|+-.+...+--..+. .+.--+.|-|..-.|+|
T Consensus 91 haipl~s~WVMtC-A~sPSg~~VAcGGLdN-------------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 91 HAIPLPSSWVMTC-AYSPSGNFVACGGLDN-------------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred eEEecCceeEEEE-EECCCCCeEEecCcCc-------------eeEEEecccccccccceeeeeecCccceeEEEEEcCC
Confidence 3348998888988 6789999999999763 4678987754111111222 23445679999999999
Q ss_pred CcEEEeCCC
Q 043381 136 GKILVAGSN 144 (286)
Q Consensus 136 GrVlv~GG~ 144 (286)
+.|+.+-|+
T Consensus 157 ~~ilT~SGD 165 (343)
T KOG0286|consen 157 NHILTGSGD 165 (343)
T ss_pred CceEecCCC
Confidence 999887764
No 103
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.38 E-value=7.6e+02 Score=24.33 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=38.5
Q ss_pred cceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCC
Q 043381 68 GEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 68 ~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
.+...-|+|+.++.|+.+. +.-+||..+. +.-..++...- . -+....=+||+++++++.
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~-------------tvriWd~~~~--~~~~~l~~hs~-~--is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDG-------------TVRIWDVRTG--ECVRKLKGHSD-G--ISGLAFSPDGNLLVSASY 308 (456)
T ss_pred EEEEecCCCCEEEEecCCC-------------cEEEEeccCC--eEEEeeeccCC-c--eEEEEECCCCCEEEEcCC
Confidence 4556788999999999762 4679999884 23333332222 2 133455689999999974
No 104
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.19 E-value=1.1e+02 Score=18.06 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=12.9
Q ss_pred ceeeEEcCCCcEEEeCC
Q 043381 127 HSTSVVLPDGKILVAGS 143 (286)
Q Consensus 127 HS~A~LLpDGrVlv~GG 143 (286)
|+.|+- ++|+|||+=.
T Consensus 5 ~gvav~-~~g~i~VaD~ 20 (28)
T PF01436_consen 5 HGVAVD-SDGNIYVADS 20 (28)
T ss_dssp EEEEEE-TTSEEEEEEC
T ss_pred cEEEEe-CCCCEEEEEC
Confidence 566776 9999999874
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=22.00 E-value=5.2e+02 Score=22.27 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=30.1
Q ss_pred ceEEeCCCcEE-EEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEE-cCCCCCCCccceeeEEcCCCcEE-EeCC
Q 043381 69 EMLLLPTGDVL-IINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSE-LTPTSKPRMCHSTSVVLPDGKIL-VAGS 143 (286)
Q Consensus 69 ~~v~LpdG~Vl-vvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~-~a~~~~~R~yHS~A~LLpDGrVl-v~GG 143 (286)
.....|||+.+ ++++.+ + ...+||..+. +... +....-+ +. ..+.|||+.+ ++++
T Consensus 35 ~l~~~~dg~~l~~~~~~~-~------------~v~~~d~~~~---~~~~~~~~~~~~---~~-~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDS-D------------TIQVIDLATG---EVIGTLPSGPDP---EL-FALHPNGKILYIANE 92 (300)
T ss_pred ceEECCCCCEEEEEECCC-C------------eEEEEECCCC---cEEEeccCCCCc---cE-EEECCCCCEEEEEcC
Confidence 35677999855 555432 1 3458998876 5543 2221111 22 3457899855 4443
No 106
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=21.50 E-value=2.2e+02 Score=25.80 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=30.7
Q ss_pred ceEEEEEEcCCCCCcCCCcceEEEEEcCCCCCccEEEEeC
Q 043381 247 GIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQIG 286 (286)
Q Consensus 247 ~~~~~~v~~P~~~~vappG~YmLFv~~~GvPS~a~~V~i~ 286 (286)
|-+.+.+++|.+ +++|.+=|.+..+|+.|.+..|.|+
T Consensus 179 Gl~QvNv~vP~~---~~~G~~~v~itvgg~~S~~~~i~v~ 215 (215)
T TIGR03437 179 GLYQVNVRVPAG---LATGAVPVVITVGGVTSNAVTIAVQ 215 (215)
T ss_pred ceEEEEEEcCCC---CCCCcEeEEEEECCccCCcEEEEeC
Confidence 468999999976 3679888888889999998877663
No 107
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=20.83 E-value=1.1e+02 Score=23.53 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=37.1
Q ss_pred CEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEEEEcCCCCCcCCCcceEEEE--E
Q 043381 195 QNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFV--V 272 (286)
Q Consensus 195 ~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~~~vappG~YmLFv--~ 272 (286)
+.++|+|+.+. .....++.|+.+.- +.+.+........+ .++++.+|+. ++||-|.+-- +
T Consensus 20 ~~v~L~F~e~v---~~~~s~v~v~~~~g---------~~v~~~~~~~~~~~---~~~~~~l~~~---l~~G~YtV~wrvv 81 (97)
T PF04234_consen 20 EEVTLTFSEPV---EPGFSSVTVTDPDG---------KRVDLGEPTVDGDG---KTLTVPLPPP---LPPGTYTVSWRVV 81 (97)
T ss_dssp SSEEEEESS------CCC-EEEEEEEEE---------TTSCTCEEEEEEST---TEEEEEESS------SEEEEEEEEEE
T ss_pred CEEEEEeCCCC---ccCccEEEEEcCCC---------ceeecCcceecCCc---eEEEEECCCC---CCCceEEEEEEEE
Confidence 45777887543 23466777774432 33333333222212 4778888764 8889998753 3
Q ss_pred c-CCCCCccEE
Q 043381 273 Y-RQVPSPGTW 282 (286)
Q Consensus 273 ~-~GvPS~a~~ 282 (286)
. ||=|..|.+
T Consensus 82 s~DGH~~~G~~ 92 (97)
T PF04234_consen 82 SADGHPVSGSF 92 (97)
T ss_dssp ETTSCEEEEEE
T ss_pred ecCCCCcCCEE
Confidence 3 787777665
No 108
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=20.71 E-value=6.3e+02 Score=23.60 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=7.8
Q ss_pred CCCcEEEeCCC
Q 043381 134 PDGKILVAGSN 144 (286)
Q Consensus 134 pDGrVlv~GG~ 144 (286)
.|+++|+++.+
T Consensus 360 ~~~~l~v~~~d 370 (377)
T TIGR03300 360 VGDGLLVQTRD 370 (377)
T ss_pred ECCEEEEEeCC
Confidence 38888877653
No 109
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=20.61 E-value=2.7e+02 Score=19.90 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=24.2
Q ss_pred CceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCCc
Q 043381 180 PSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPF 222 (286)
Q Consensus 180 P~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~ 222 (286)
|+|......-.+..|+.++|+....+ .....+.+.+.+.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~----~p~~~v~W~~~~~ 39 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSG----NPPPTVTWYKNGR 39 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEE----SSSSEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEe----CCCCccccccccc
Confidence 56666621345789999888876443 1345677777643
No 110
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=20.50 E-value=6.2e+02 Score=23.73 Aligned_cols=98 Identities=14% Similarity=0.262 Sum_probs=56.6
Q ss_pred cCcEEEEEecCCCCCeEee-c------CC--CCccccceEEe----CCCcEEEEcCccCCCCCccCCCCCCCccEEecCC
Q 043381 41 LQDCGRIEITNKSATWQRE-M------MP--SPRVMGEMLLL----PTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPN 107 (286)
Q Consensus 41 ~~s~~~id~~~~~~~W~~~-~------M~--~~R~~~~~v~L----pdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~ 107 (286)
+.+...||..+.+-.|+.. + |+ .=...|++-.+ .+|.|.+..=...+..+ ....--....+||.
T Consensus 164 ~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~---~~~s~~~v~~ld~~ 240 (299)
T PF14269_consen 164 TSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNG---TEPSRGLVLELDPE 240 (299)
T ss_pred cCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCC---CcCCCceEEEEECC
Confidence 4455556665555678865 4 21 12567888888 89999887663211111 11111123578888
Q ss_pred CCCCCceEEcC-----CCCCCCccceeeEEcCCCcEEEeCCC
Q 043381 108 DPINERFSELT-----PTSKPRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 108 t~~g~~wt~~a-----~~~~~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
+. +.+.+. +-.+--..-+.+=+||+|.+||.=|.
T Consensus 241 ~~---~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~ 279 (299)
T PF14269_consen 241 TM---TVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN 279 (299)
T ss_pred CC---EEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC
Confidence 66 544322 33333334456778999999998664
No 111
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=20.22 E-value=3.6e+02 Score=31.99 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=42.7
Q ss_pred ccceEEeCCCcEEEEcCccCCCCCccCCCCCCCcc--EEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCC
Q 043381 67 MGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTP--VLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSN 144 (286)
Q Consensus 67 ~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~--e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~ 144 (286)
+|..++.-|++||..|-...|--|-++ .....+| .+--|.+. -..+ .+-..| +++++.||.||..|..
T Consensus 777 ~HtVlL~sd~~VfTFG~~~HGQLG~GD-t~Sk~~Pq~V~~~~~t~----~vQV----aAGSNH-T~l~~~DGsVFTFGaF 846 (3738)
T KOG1428|consen 777 FHTVLLASDRRVFTFGSNCHGQLGVGD-TLSKNTPQQVILPSDTV----IVQV----AAGSNH-TILRANDGSVFTFGAF 846 (3738)
T ss_pred ceEEEEecCCcEEEecCCcccccCcCc-cccCCCcceEEcCCCCc----eEEE----ecCCCc-eEEEecCCcEEEeccc
Confidence 577778889999999977666555442 1111112 23333333 1111 122356 7999999999999986
Q ss_pred CCC
Q 043381 145 PHS 147 (286)
Q Consensus 145 ~~~ 147 (286)
..+
T Consensus 847 ~KG 849 (3738)
T KOG1428|consen 847 GKG 849 (3738)
T ss_pred cCc
Confidence 544
No 112
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=20.07 E-value=5e+02 Score=24.59 Aligned_cols=81 Identities=15% Similarity=0.302 Sum_probs=41.5
Q ss_pred EEEEEecCCCCCeEeecCCCCccccceEEeCCCcEEEEcCccCCCCCccCCCCCCCccEEecCCCCCCCceEEcCCCCCC
Q 043381 44 CGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKP 123 (286)
Q Consensus 44 ~~~id~~~~~~~W~~~~M~~~R~~~~~v~LpdG~VlvvGG~~~g~ag~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~ 123 (286)
-.+|.-.|...+|+...-...-..-+...++||++++++-.. . -| .-+||-.. .|+.-......
T Consensus 124 G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G--~-~~----------~s~~~G~~---~w~~~~r~~~~ 187 (302)
T PF14870_consen 124 GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG--N-FY----------SSWDPGQT---TWQPHNRNSSR 187 (302)
T ss_dssp --EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS--S-EE----------EEE-TT-S---S-EEEE--SSS
T ss_pred CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc--c-EE----------EEecCCCc---cceEEccCccc
Confidence 345555566689997633333555667789999988887532 1 01 35677776 89887666555
Q ss_pred CccceeeEEcCCCcEEEeC
Q 043381 124 RMCHSTSVVLPDGKILVAG 142 (286)
Q Consensus 124 R~yHS~A~LLpDGrVlv~G 142 (286)
|. .+++ .-||+.++++.
T Consensus 188 ri-q~~g-f~~~~~lw~~~ 204 (302)
T PF14870_consen 188 RI-QSMG-FSPDGNLWMLA 204 (302)
T ss_dssp -E-EEEE-E-TTS-EEEEE
T ss_pred ee-hhce-ecCCCCEEEEe
Confidence 54 3444 45899997765
Done!