BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043382
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 182 LYTGNDRSILRTTAYFVVAGEAL--KTHITALGPLVLPVSEQLLFIATSVGRKIFKMKIK 239
L GN ++ T ++ G L KT + A L V E F+ V R +K
Sbjct: 225 LCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFVK 284
Query: 240 QY---PSRV-TLY-RFRNTSSSLVWYELAYAEAKRRIPKGDRICQIGFGAGFNCN--TVV 292
+ P++V T++ N + V L+ + R+ KGDRI +G G+G NC+ VV
Sbjct: 285 SFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVV 344
Query: 293 W 293
W
Sbjct: 345 W 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 182 LYTGNDRSILRTTAYFVVAGEAL--KTHITALGPLVLPVSEQLLFIATSVGRKIFKMKIK 239
L GN ++ T ++ G L KT + A L V E F+ V R +K
Sbjct: 224 LCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFVK 283
Query: 240 QY---PSRV-TLY-RFRNTSSSLVWYELAYAEAKRRIPKGDRICQIGFGAGFNCN--TVV 292
+ P++V T++ N + V L+ + R+ KGDRI +G G+G NC+ VV
Sbjct: 284 SFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVV 343
Query: 293 W 293
W
Sbjct: 344 W 344
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 182 LYTGNDRSILRTTAYFVVAGEAL--KTHITALGPLVLPVSEQLLFIATSVGRKIFKMKIK 239
L GN ++ T ++ G L KT + A L V E F+ V R +K
Sbjct: 218 LCRGNLDRMVTDTRLLLIEGIKLAQKTFLAARQVLGWAVDELDQFVIHQVSRPHTAAFVK 277
Query: 240 QY---PSRV-TLY-RFRNTSSSLVWYELAYAEAKRRIPKGDRICQIGFGAGFNCN--TVV 292
+ P++V T++ N + V L+ + R+ KGDRI +G G+G NC+ VV
Sbjct: 278 SFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVV 337
Query: 293 W 293
W
Sbjct: 338 W 338
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 235 KMKIKQYPSRVTLYRFRNTSSSLVWYELAYAEAKRRIPKGDRICQIGFGAGFN 287
KMKI ++ V + NT SS + L A + +G R+ +GFG G++
Sbjct: 305 KMKIPEHKFPVLMEHCGNTVSSTLPLALETMRANGTLARGMRLMLLGFGVGYS 357
>pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|H Chain H, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|I Chain I, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|J Chain J, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|K Chain K, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|L Chain L, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|M Chain M, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|N Chain N, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|O Chain O, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|P Chain P, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|Q Chain Q, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|R Chain R, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3K|A Chain A, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|B Chain B, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|C Chain C, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|A Chain A, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1JJW|B Chain B, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1JJW|C Chain C, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1KYI|G Chain G, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|H Chain H, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|I Chain I, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|J Chain J, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|K Chain K, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|L Chain L, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|M Chain M, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|N Chain N, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|O Chain O, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|P Chain P, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|Q Chain Q, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|R Chain R, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1OFH|G Chain G, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|H Chain H, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|I Chain I, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|L Chain L, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|M Chain M, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|N Chain N, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|G Chain G, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|H Chain H, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|I Chain I, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|L Chain L, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|M Chain M, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|N Chain N, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 174
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 187 DRSILRTTAYFVVAGEALKTHITALGPLVLPVSEQLLFIATS 228
DR++ + A +VA E IT +G +V P +Q+L I +
Sbjct: 85 DRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSG 126
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 245 VTLYRFRNTSSSLVWYELAYAEAKRRIPKGDRICQIGFGAGFNCNTVV 292
V + R+ NTS++ + L A RI +GD + + FGAG V
Sbjct: 269 VNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGAGLTWAAAV 316
>pdb|2BAZ|A Chain A, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2BAZ|B Chain B, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2BAZ|C Chain C, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2XX6|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XY3|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|E Chain E, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|F Chain F, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2Y1T|A Chain A, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|B Chain B, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|C Chain C, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|D Chain D, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|E Chain E, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|F Chain F, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
Length = 142
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 259 WYELAYAEAKRRIPKGDRICQ 279
W+ AYA +I KGDRICQ
Sbjct: 90 WFFPAYALRDTKIKKGDRICQ 110
>pdb|2XCD|A Chain A, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|B Chain B, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|C Chain C, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|D Chain D, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|E Chain E, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|F Chain F, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCE|A Chain A, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|B Chain B, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|C Chain C, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|D Chain D, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|E Chain E, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|F Chain F, Structure Of Yncf In Complex With Dupnhpp
Length = 144
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 259 WYELAYAEAKRRIPKGDRICQ 279
W+ AYA I KGDRICQ
Sbjct: 92 WFFPAYALRDTEIKKGDRICQ 112
>pdb|2VWD|A Chain A, Nipah Virus Attachment Glycoprotein
pdb|2VWD|B Chain B, Nipah Virus Attachment Glycoprotein
Length = 420
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 64 LKLLERSRIGN-MTYGPKSLMDNPAENRHMKEAKKETDDVIIGAIDERLAKTGFKHKDIG 122
L+ +E+ R M YGP + K+ D + A+ L +T FK+ D
Sbjct: 155 LRSIEKGRYDKVMPYGPSGI--------------KQGDTLYFPAVG-FLVRTEFKYNDSN 199
Query: 123 ILVVNSSLFNPTP---SLSAFIVNHYKLRSNILSYNLGALQSAQV 164
+ P S+ +HY LRS +L YNL ++ +V
Sbjct: 200 CPITKCQYSKPENCRLSMGIRPNSHYILRSGLLKYNLSDGENPKV 244
>pdb|2VSM|A Chain A, Nipah Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 416
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 64 LKLLERSRIGN-MTYGPKSLMDNPAENRHMKEAKKETDDVIIGAIDERLAKTGFKHKDIG 122
L+ +E+ R M YGP + K+ D + A+ L +T FK+ D
Sbjct: 150 LRSIEKGRYDKVMPYGPSGI--------------KQGDTLYFPAVG-FLVRTEFKYNDSN 194
Query: 123 ILVVNSSLFNPTP---SLSAFIVNHYKLRSNILSYNLGALQSAQV 164
+ P S+ +HY LRS +L YNL ++ +V
Sbjct: 195 CPITKCQYSKPENCRLSMGIRPNSHYILRSGLLKYNLSDGENPKV 239
>pdb|3D11|A Chain A, Crystal Structures Of The Nipah G Attachment Glycoprotein
pdb|3D12|A Chain A, Crystal Structures Of Nipah Virus G Attachment
Glycoprotein In Complex With Its Receptor Ephrin-B3
pdb|3D12|D Chain D, Crystal Structures Of Nipah Virus G Attachment
Glycoprotein In Complex With Its Receptor Ephrin-B3
Length = 428
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 64 LKLLERSRIGN-MTYGPKSLMDNPAENRHMKEAKKETDDVIIGAIDERLAKTGFKHKDIG 122
L+ +E+ R M YGP + K+ D + A+ L +T FK+ D
Sbjct: 162 LRSIEKGRYDKVMPYGPSGI--------------KQGDTLYFPAVG-FLVRTEFKYNDSN 206
Query: 123 ILVVNSSLFNPTP---SLSAFIVNHYKLRSNILSYNLGALQSAQV 164
+ P S+ +HY LRS +L YNL ++ +V
Sbjct: 207 CPITKCQYSKPENCRLSMGIRPNSHYILRSGLLKYNLSDGENPKV 251
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 271 IPKGDRICQIGFGAGFNCNTVVWPVLK 297
+ GDR+ G GAG+ C V +L+
Sbjct: 314 VQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1FOU|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1FOU|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1FOU|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1FOU|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1FOU|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1FOU|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1FOU|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1FOU|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1FOU|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1FOU|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1FOU|L Chain L, Connector Protein From Bacteriophage Phi29
Length = 309
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 116 FKHKDIGILVVNSSL-FNPTPSLSAFIVNHYKLRSNILSYNLGALQSAQVQPNSYTLVVS 174
K +D+G+++ N+ + F TP+L F +L+ I+S N Q+AQ P L+ +
Sbjct: 112 MKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKE-IISVN----QNAQKTP---VLIRA 163
Query: 175 TENITLGL------YTGNDRSILRTTAYFVVAGEALKT 206
+N L L Y GN I A + E KT
Sbjct: 164 NDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKT 201
>pdb|2DSN|A Chain A, Crystal Structure Of T1 Lipase
pdb|2DSN|B Chain B, Crystal Structure Of T1 Lipase
Length = 387
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 160 QSAQVQPNSYTLVVSTENITLGLYTGNDRSILRTTAYFVV 199
Q Q PN+Y L STE G TGN L A+ V
Sbjct: 253 QWVQASPNTYYLSFSTERTYRGALTGNHYPELGMNAFSAV 292
>pdb|1IJG|A Chain A, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|B Chain B, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|C Chain C, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|D Chain D, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|E Chain E, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|F Chain F, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|G Chain G, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|H Chain H, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|I Chain I, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|J Chain J, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|K Chain K, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|L Chain L, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1JNB|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1JNB|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1JNB|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1JNB|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1JNB|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1JNB|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1JNB|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1JNB|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1JNB|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1JNB|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1JNB|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1JNB|L Chain L, Connector Protein From Bacteriophage Phi29
pdb|1H5W|A Chain A, 2.1a Bacteriophage Phi-29 Connector
pdb|1H5W|B Chain B, 2.1a Bacteriophage Phi-29 Connector
pdb|1H5W|C Chain C, 2.1a Bacteriophage Phi-29 Connector
Length = 309
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 116 FKHKDIGILVVNSSL-FNPTPSLSAFIVNHYKLRSNILSYNLGALQSAQVQPNSYTLVVS 174
K +D+G+++ N+ + F TP+L F +L+ I+S N Q+AQ P L+ +
Sbjct: 112 MKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKE-IISVN----QNAQKTP---VLIRA 163
Query: 175 TENITLGL------YTGNDRSILRTTAYFVVAGEALKT 206
+N L L Y GN I A + E KT
Sbjct: 164 NDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKT 201
>pdb|1JI3|A Chain A, Crystal Structure Of The First Thermostable Bacterial
Lipase From Bacillus Stearothermophilus
pdb|1JI3|B Chain B, Crystal Structure Of The First Thermostable Bacterial
Lipase From Bacillus Stearothermophilus
Length = 388
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 160 QSAQVQPNSYTLVVSTENITLGLYTGNDRSILRTTAYFVV 199
Q Q PN+Y L STE G TGN L A+ V
Sbjct: 254 QWVQASPNTYYLSFSTERTYRGALTGNHYPELGMNAFSAV 293
>pdb|2Z5G|A Chain A, Crystal Structure Of T1 Lipase F16l Mutant
pdb|2Z5G|B Chain B, Crystal Structure Of T1 Lipase F16l Mutant
Length = 387
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 160 QSAQVQPNSYTLVVSTENITLGLYTGNDRSILRTTAYFVV 199
Q Q PN+Y L STE G TGN L A+ V
Sbjct: 253 QWVQASPNTYYLSFSTERTYRGALTGNHYPELGMNAFSAV 292
>pdb|3UMJ|A Chain A, Crystal Structure Of D311e Lipase
pdb|3UMJ|B Chain B, Crystal Structure Of D311e Lipase
Length = 387
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 160 QSAQVQPNSYTLVVSTENITLGLYTGNDRSILRTTAYFVV 199
Q Q PN+Y L STE G TGN L A+ V
Sbjct: 253 QWVQASPNTYYLSFSTERTYRGALTGNHYPELGMNAFSAV 292
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 271 IPKGDRICQIGFGAGFNCNTVVWPVLK 297
+ GDR+ G GAG+ C V +L+
Sbjct: 314 VQPGDRVLLFGGGAGYTCTAAVVEILR 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,283,479
Number of Sequences: 62578
Number of extensions: 360602
Number of successful extensions: 820
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 22
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)