Your job contains 1 sequence.
>043385
MSLGFSFNMFSIQSPKSQILSRTRLSSQFINQTQVKSAPYTLSDYHVNSSQPFKLSTSSK
RFNPITASTAVEATTSSFRNKNPKDINILVVGSTGYIGKFVVEELVSRGFNVIAIAREKS
GIRGRNDKEETLNQLQGASVCFSDVTNLESLEKSLENLGTSIDVVVSCLASRSGGVKDSW
KIDYEANRNSLVAGRNCGASHFVLLSAICVQKPLLEFQRAKLKFEAEMMKVAEEDSGFTY
SIVRPTAFFKSLGGQVELVKEGKPYVMFGDGKLCAYCVLSEDKINQILPIGGPGKALTPL
EQGEILFRLLGKEPKFLKVPIGIMDFAIGVLDFLVKIFPSLEDAAEFGKIGRYYAAESML
ILDPETGEYSAEKTPSYGKDTLEEFFERVLREGMAGQELGEQTIF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043385
(405 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2180019 - symbol:PCB2 "PALE-GREEN AND CHLOROPH... 1428 3.5e-146 1
UNIPROTKB|Q3Z6W4 - symbol:DET1324 "Putative uncharacteriz... 119 0.00017 1
TIGR_CMR|DET_1324 - symbol:DET_1324 "conserved hypothetic... 119 0.00017 1
TAIR|locus:2040854 - symbol:AT2G34460 species:3702 "Arabi... 118 0.00018 1
TIGR_CMR|GSU_0385 - symbol:GSU_0385 "NADH dehydrogenase s... 116 0.00034 1
TAIR|locus:2087901 - symbol:Tic62 "translocon at the inne... 120 0.00044 1
>TAIR|locus:2180019 [details] [associations]
symbol:PCB2 "PALE-GREEN AND CHLOROPHYLL B REDUCED 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA;IMP;TAS]
[GO:0051744 "3,8-divinyl protochlorophyllide a 8-vinyl reductase
activity" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0009073 "aromatic amino acid family biosynthetic
process" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0016117 "carotenoid biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0030154 "cell
differentiation" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR016040
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0009941 GO:GO:0009534 GO:GO:0015995
eggNOG:COG0702 EMBL:BT025627 IPI:IPI00539374 RefSeq:NP_197367.1
UniGene:At.21772 ProteinModelPortal:Q1H537 SMR:Q1H537 IntAct:Q1H537
STRING:Q1H537 PaxDb:Q1H537 PRIDE:Q1H537 EnsemblPlants:AT5G18660.1
GeneID:831984 KEGG:ath:AT5G18660 TAIR:At5g18660
HOGENOM:HOG000251228 InParanoid:Q1H537 OMA:ICVQKPL PhylomeDB:Q1H537
ProtClustDB:PLN02657 Genevestigator:Q1H537 GO:GO:0051744
Uniprot:Q1H537
Length = 417
Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
Identities = 291/420 (69%), Positives = 330/420 (78%)
Query: 1 MSLGFSFNMFSIQSPKSQILSRTRLSSQFINQTQVKSAPYTLSDYHVNSSQPFKLSTSSK 60
MSL SFN+F+ SPK + + + S+FI+Q QVKS+P S +H N S L
Sbjct: 1 MSLCSSFNVFASYSPKPKTIFK---DSKFISQFQVKSSPLA-STFHTNESST-SLKYKRA 55
Query: 61 RFNPIXXXXXXXXXXXX---FRNKNPKDINILVVGSTGYIGKFVVEELVSRGFNVIAIAR 117
R PI FRNK+PKDIN+LVVGSTGYIG+FVV+E++ RGFNVIA+AR
Sbjct: 56 RLKPISSLDSGISEIATSPSFRNKSPKDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAR 115
Query: 118 EKSGIRGRNDKEETLNQLQGASVCFSDVTXXXXXXXXXXXXGTSIDVVVSCLASRSGGVK 177
EKSGIRG+NDKEETL QLQGA+VCFSDVT G +DVVVSCLASR+GG+K
Sbjct: 116 EKSGIRGKNDKEETLKQLQGANVCFSDVTELDVLEKSIENLGFGVDVVVSCLASRNGGIK 175
Query: 178 DSWKIDYEANRNSLVAGRNCGASHFVLLSAICVQKPLLEFQRAKLKFEAEMMKVAEE-DS 236
DSWKIDYEA +NSLVAG+ GA HFVLLSAICVQKPLLEFQRAKLKFEAE+M +AE+ DS
Sbjct: 176 DSWKIDYEATKNSLVAGKKFGAKHFVLLSAICVQKPLLEFQRAKLKFEAELMDLAEQQDS 235
Query: 237 GFTYSIVRPTAFFKSLGGQVELVKEGKPYVMFGDGKLCAY--------------CVLSED 282
FTYSIVRPTAFFKSLGGQVE+VK+GKPYVMFGDGKLCA CVL E+
Sbjct: 236 SFTYSIVRPTAFFKSLGGQVEIVKDGKPYVMFGDGKLCACKPISEQDLAAFIADCVLEEN 295
Query: 283 KINQILPIGGPGKALTPLEQGEILFRLLGKEPKFLKVPIGIMDFAIGVLDFLVKIFPSLE 342
KINQ+LPIGGPGKALTPLEQGEILF++LG+EPKFLKVPI IMDF IGVLD + KIFPS+
Sbjct: 296 KINQVLPIGGPGKALTPLEQGEILFKILGREPKFLKVPIEIMDFVIGVLDSIAKIFPSVG 355
Query: 343 DAAEFGKIGRYYAAESMLILDPETGEYSAEKTPSYGKDTLEEFFERVLREGMAGQELGEQ 402
+AAEFGKIGRYYAAESMLILDPETGEYS EKTPSYGKDTLE+FF +V+REGMAGQELGEQ
Sbjct: 356 EAAEFGKIGRYYAAESMLILDPETGEYSEEKTPSYGKDTLEDFFAKVIREGMAGQELGEQ 415
>UNIPROTKB|Q3Z6W4 [details] [associations]
symbol:DET1324 "Putative uncharacterized protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0702 KO:K00356
HOGENOM:HOG000168008 KO:K00329 OMA:VKRFIHM RefSeq:YP_182035.1
ProteinModelPortal:Q3Z6W4 STRING:Q3Z6W4 GeneID:3229421
KEGG:det:DET1324 PATRIC:21609677 ProtClustDB:CLSK935576
BioCyc:DETH243164:GJNF-1325-MONOMER Uniprot:Q3Z6W4
Length = 302
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 58/256 (22%), Positives = 102/256 (39%)
Query: 88 ILVVGSTGYIGKFVVEELVSRGFNVIAIAREKSGIRGRNDKEETLNQLQGASVCFSDVTX 147
+ V G +G++G ++ L GF + + N+ E + G + V
Sbjct: 5 VFVSGGSGFVGGHLLPRLAENGFKIRLLVM--------NEAEAKRVKTPGVEFVYGTVND 56
Query: 148 XXXXXXXXXXXGTSIDVVVSCLASRSGGVKDSWKIDYEANRNSLVAGRNCGASHFVLLSA 207
I +V ++ + K++ E +N L A G F+ +
Sbjct: 57 LPVLMESMKDIFAVIHLVAILRENKDITFE---KVNIEGTKNMLAAADQNGVKRFIHMGI 113
Query: 208 ICVQK-PLLEFQRAKLKFEAEMMKVAEEDSGFTYSIVRPTAFFKSLGGQVE-LVKEGKPY 265
+ P + +K E + K SG YSI++P+ F G + L++ KPY
Sbjct: 114 LGASADPRFTYLHSKYLAEEAVSK-----SGLDYSILKPSVMFGQGAGFITALIRSFKPY 168
Query: 266 VMF----GDGKL------------CAYCVLSEDKINQILPIGGPGKALTPLEQGEILFRL 309
+ G+GK C +L +KI+Q + IGGP + T E + +
Sbjct: 169 PLLAPVAGNGKTRLQPIWVEDVVSCLLKMLDGEKIHQSVQIGGP-RIFTYDEVLLAVMQA 227
Query: 310 LG-KEPKFLKVPIGIM 324
+G K+P+ L VP+G+M
Sbjct: 228 MGVKKPR-LHVPVGLM 242
>TIGR_CMR|DET_1324 [details] [associations]
symbol:DET_1324 "conserved hypothetical protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0702 KO:K00356
HOGENOM:HOG000168008 KO:K00329 OMA:VKRFIHM RefSeq:YP_182035.1
ProteinModelPortal:Q3Z6W4 STRING:Q3Z6W4 GeneID:3229421
KEGG:det:DET1324 PATRIC:21609677 ProtClustDB:CLSK935576
BioCyc:DETH243164:GJNF-1325-MONOMER Uniprot:Q3Z6W4
Length = 302
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 58/256 (22%), Positives = 102/256 (39%)
Query: 88 ILVVGSTGYIGKFVVEELVSRGFNVIAIAREKSGIRGRNDKEETLNQLQGASVCFSDVTX 147
+ V G +G++G ++ L GF + + N+ E + G + V
Sbjct: 5 VFVSGGSGFVGGHLLPRLAENGFKIRLLVM--------NEAEAKRVKTPGVEFVYGTVND 56
Query: 148 XXXXXXXXXXXGTSIDVVVSCLASRSGGVKDSWKIDYEANRNSLVAGRNCGASHFVLLSA 207
I +V ++ + K++ E +N L A G F+ +
Sbjct: 57 LPVLMESMKDIFAVIHLVAILRENKDITFE---KVNIEGTKNMLAAADQNGVKRFIHMGI 113
Query: 208 ICVQK-PLLEFQRAKLKFEAEMMKVAEEDSGFTYSIVRPTAFFKSLGGQVE-LVKEGKPY 265
+ P + +K E + K SG YSI++P+ F G + L++ KPY
Sbjct: 114 LGASADPRFTYLHSKYLAEEAVSK-----SGLDYSILKPSVMFGQGAGFITALIRSFKPY 168
Query: 266 VMF----GDGKL------------CAYCVLSEDKINQILPIGGPGKALTPLEQGEILFRL 309
+ G+GK C +L +KI+Q + IGGP + T E + +
Sbjct: 169 PLLAPVAGNGKTRLQPIWVEDVVSCLLKMLDGEKIHQSVQIGGP-RIFTYDEVLLAVMQA 227
Query: 310 LG-KEPKFLKVPIGIM 324
+G K+P+ L VP+G+M
Sbjct: 228 MGVKKPR-LHVPVGLM 242
>TAIR|locus:2040854 [details] [associations]
symbol:AT2G34460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] InterPro:IPR016040
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 eggNOG:COG0702 EMBL:AY034977
EMBL:AY056425 EMBL:BT000884 IPI:IPI00536241 PIR:T02333
RefSeq:NP_565789.2 UniGene:At.48549 UniGene:At.60259
ProteinModelPortal:Q8H124 SMR:Q8H124 IntAct:Q8H124 STRING:Q8H124
PaxDb:Q8H124 PRIDE:Q8H124 EnsemblPlants:AT2G34460.1 GeneID:818009
KEGG:ath:AT2G34460 TAIR:At2g34460 HOGENOM:HOG000262433
InParanoid:Q8H124 OMA:NFRAVEL PhylomeDB:Q8H124 ProtClustDB:PLN00141
Genevestigator:Q8H124 Uniprot:Q8H124
Length = 280
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 49/173 (28%), Positives = 70/173 (40%)
Query: 84 KDINILVVGSTGYIGKFVVEELVSRGFNVIAIAREKSGIRGRNDKEETLNQLQGASVCFS 143
K + V G+TG GK +VE+L+SRGF V K+G+R + + + +
Sbjct: 45 KTKKVFVAGATGQTGKRIVEQLLSRGFAV------KAGVRDVEKAKTSFKDDPSLQIVRA 98
Query: 144 DVTXXXXXXXXXXXXGTSIDVVVSCLASRSG-GVKDSWKIDYEANRNSLVAGRNCGASHF 202
DVT G V+ R G + WK+D N + A R G F
Sbjct: 99 DVTEGPDKLAEVI--GDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKF 156
Query: 203 VLLSAICVQ--------KPLLEFQRA-KLKFEAEMMKVAE-EDSGFTYSIVRP 245
VL+S+I V P F L A++ + SG Y+IVRP
Sbjct: 157 VLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRP 209
>TIGR_CMR|GSU_0385 [details] [associations]
symbol:GSU_0385 "NADH dehydrogenase subunit, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003954 "NADH
dehydrogenase activity" evidence=ISS] [GO:0008137 "NADH
dehydrogenase (ubiquinone) activity" evidence=ISS]
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AE017180
GenomeReviews:AE017180_GR KO:K00356 HOGENOM:HOG000168008 KO:K00329
OMA:VKRFIHM RefSeq:NP_951444.1 ProteinModelPortal:Q74G63
GeneID:2686648 KEGG:gsu:GSU0385 PATRIC:22023514
ProtClustDB:CLSK827793 BioCyc:GSUL243231:GH27-410-MONOMER
Uniprot:Q74G63
Length = 294
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 68/279 (24%), Positives = 120/279 (43%)
Query: 86 INILVVGSTGYIGKFVVEELVSRGFNVIAIAREKS-GIRGRNDKEETLNQLQGASVCFSD 144
+ I V G TG++G V L+ RG ++ + ++S G+ E + Q++G D
Sbjct: 1 MKIFVTGGTGFVGGHVRRALLERGHSLRLLVHQRSEGV------EAGIEQVEG------D 48
Query: 145 VTXXXXXXXXXXXXGTSIDVVVSCLASRSGGVKDSWKIDYEANRNSLVAGRNCGASHFVL 204
VT ++++V G+ K+ EA RN + A R G +
Sbjct: 49 VTRPDTFAGAVAGCDATVNLVGIIREFPGRGITFE-KLHVEATRNVVEAARAAGIRRHLQ 107
Query: 205 LSAICVQKPLLE-FQRAKLKFEAEMMKVAEEDSGFTYSIVRPTAFFKSLGGQVEL----V 259
+SA+ + + R K + E E+++ +E D ++I RP+ F G V++ V
Sbjct: 108 MSALATRPDATAAYHRTKWRAE-EVVRQSELD----WTIFRPSLIFGPKGAFVDMLAGFV 162
Query: 260 KEGKPYVMFGDG--KL-------CAYC-VLSEDK---INQILPIGGPGKALTPLEQGEIL 306
+ + GDG +L A C L+ D Q + GP + LT E +I+
Sbjct: 163 RRFPAVPVVGDGTYRLQPVSVDDVARCFALALDMPETFGQTYELCGPDR-LTYNEVLDII 221
Query: 307 FRLLGKEPKFLKVP--IGIMDFAIGVLDFLVKIFPSLED 343
R+LGK +K+P +G++ + ++ FP D
Sbjct: 222 GRVLGKG-HVVKIPQPLGLLKLVVPIMQGF-SFFPLTMD 258
>TAIR|locus:2087901 [details] [associations]
symbol:Tic62 "translocon at the inner envelope membrane
of chloroplasts 62" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0010103
"stomatal complex morphogenesis" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019684 "photosynthesis, light
reaction" evidence=RCA] InterPro:IPR016040 GO:GO:0009570
EMBL:CP002686 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0015031
GO:GO:0009941 GO:GO:0009706 GO:GO:0009535 eggNOG:COG0702
EMBL:AP002039 EMBL:BT002039 EMBL:BT008403 IPI:IPI00530638
RefSeq:NP_188519.2 UniGene:At.27605 ProteinModelPortal:Q8H0U5
STRING:Q8H0U5 PaxDb:Q8H0U5 PRIDE:Q8H0U5 EnsemblPlants:AT3G18890.1
GeneID:821422 KEGG:ath:AT3G18890 TAIR:At3g18890
HOGENOM:HOG000090541 InParanoid:Q8H0U5 OMA:ICCIGAS PhylomeDB:Q8H0U5
ProtClustDB:PLN03209 Genevestigator:Q8H0U5 Uniprot:Q8H0U5
Length = 641
Score = 120 (47.3 bits), Expect = 0.00044, P = 0.00044
Identities = 53/210 (25%), Positives = 90/210 (42%)
Query: 50 SQPFKLSTSSKRFNPIXXXXXXXXXXXXFRNKNPKDINILVVGSTGYIGKFVVEELVSRG 109
S+ F LS + PI N +D+ + V G+TG +G V EL+ G
Sbjct: 49 SRSFDLSLRAS--GPIRASSVVTEASPTNLNSKEEDL-VFVAGATGKVGSRTVRELLKLG 105
Query: 110 FNVIAIAR--EKSGIRGRNDKEETL-NQLQGASVC--FSDVTXXXXXXXXXXXXGTSIDV 164
F V A R +++G ++ KE L N +G V + V
Sbjct: 106 FRVRAGVRSAQRAGSLVQSVKEMKLQNTDEGTQPVEKLEIVECDLEKKDSIQPALGNASV 165
Query: 165 VVSCLASRSGGVKD---SWKIDYEANRNSLVAGRNCGASHFVLLSAICVQKPLLEFQRAK 221
++ C+ + + D ++IDY A +N + A + ++F+L++++ K F A
Sbjct: 166 IICCIGASEKEISDITGPYRIDYLATKNLVDAATSAKVNNFILVTSLGTNK--FGFPAAI 223
Query: 222 LKFEAEMM---KVAEE---DSGFTYSIVRP 245
L ++ + AEE +SG Y+IVRP
Sbjct: 224 LNLFWGVLCWKRKAEEALIESGLNYAIVRP 253
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 405 381 0.00090 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 604 (64 KB)
Total size of DFA: 215 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.51u 0.10s 27.61t Elapsed: 00:00:01
Total cpu time: 27.52u 0.10s 27.62t Elapsed: 00:00:01
Start: Fri May 10 00:22:29 2013 End: Fri May 10 00:22:30 2013