BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043389
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/224 (91%), Positives = 215/224 (95%), Gaps = 1/224 (0%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ +FGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKK+AKQGQMGAVK
Sbjct: 2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 62 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
SLQKIMQEFERQNEKMEMV+EVMGDAIDDALEGD+EEEETE+LV+QVLDEIGIDINQELV
Sbjct: 122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181
Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDD-GGIDSDLQARLDNLRRM 223
NAPS VA PA K KV QAEATG +D GGIDSDLQARLDNLR+M
Sbjct: 182 NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 255 bits (651), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/194 (63%), Positives = 160/194 (82%)
Query: 3 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVM 62
FLFGK+KTP E+LREN+R L+KS+REI+RER LQ QEKK+I +IKK AKQGQM + K+M
Sbjct: 2 FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIM 61
Query: 63 AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 122
AKDL+RTR+ I+KFY++K+QLQ VSLRIQTL+STQAM EAMKGVTKAM MNRQMNLP
Sbjct: 62 AKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQF 121
Query: 123 QKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNA 182
KIM EFE+Q++KM+M E+M D +D +E D EEE+++E++NQVLDEIGID+ +LV+A
Sbjct: 122 TKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDA 181
Query: 183 PSSTVAAPAVKGKV 196
P++ + A K +V
Sbjct: 182 PTTVGTSVASKHQV 195
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 224 bits (572), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/222 (54%), Positives = 172/222 (77%), Gaps = 3/222 (1%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M LFG+RKTP E+LR+N+R L++++R+++RERQ L+ QEKK+I++IKK AKQGQM AVK
Sbjct: 1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
+MAKDL+RTR ++KF +++ +Q VSL+IQTLKS +M +AMKGVTKAM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+QKIM EFERQ+E M+M E+M DAIDDA+ +D+EEE++ +V+QVLDE+G+ ++ EL
Sbjct: 121 QIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELS 180
Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
N P++ + GK A+ + T D D+DL+ RL+NLRR
Sbjct: 181 NLPATGGSLSVAAGKKAEPQPTLAD---ADADLEERLNNLRR 219
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 217 bits (552), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 171/222 (77%), Gaps = 1/222 (0%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
+MAKDL+RTR + KF +++ +Q VSL+IQTLKS +M +AMKGVTKAMG MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+QKIM EFERQ E M+M E+M DAIDDA+ +++EEE++ +V+QVLDE+G+ + EL
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180
Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
N P ST + +V +AEAT + D+DL+ RL NLRR
Sbjct: 181 NLP-STGGSLSVAAGGKKAEATASALADADADLEERLKNLRR 221
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 214 bits (546), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/185 (60%), Positives = 151/185 (81%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
+MAKDL+RTR + KF +++ +Q VSL+IQTLKS +M +AMKGVTKAMG MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+QKIM EFERQ E M+M E+M DAIDDA+ +++EEE++ +V+QVLDE+G+ + EL
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180
Query: 181 NAPSS 185
N PS+
Sbjct: 181 NLPST 185
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 214 bits (544), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/225 (56%), Positives = 172/225 (76%), Gaps = 9/225 (4%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M FLFG+RKTP E+LR+N+R L+K++RE++RERQ L+ QEKK+I++IKK AKQGQM AVK
Sbjct: 1 MEFLFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
+MAKDL+RTR ++KF +++ +Q VSL+IQTLKS +M +AMKGVTKAM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+QKIM EFE+Q+E M+M E+M DAIDDA+ +D+EEE++ +V+QVLDE+G+ + EL
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELS 180
Query: 181 NAPS---STVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
N PS S A A KG+ + A A + +DL+ RL+NLRR
Sbjct: 181 NLPSTGGSLSVAGAKKGEPSAALADAD------ADLEERLNNLRR 219
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 213 bits (543), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 126/225 (56%), Positives = 171/225 (76%), Gaps = 9/225 (4%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M FLFG+RKTP ELLR+N+R L++++RE++RERQ L+ QEKK+I++IKK AKQGQM AVK
Sbjct: 1 MEFLFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
+MAKDL+RTR ++KF +++ +Q VSL+IQTLKS +M +AMKGVTKAM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+QKIM EFE+Q+E M+M E+M DAIDDA+ +D+EEE++ +V+QVLDE+G+ + EL
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELS 180
Query: 181 NAPS---STVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222
N PS S A A KG+ A A + +DL+ RL+NLRR
Sbjct: 181 NLPSTGGSLSVAGAKKGEATAALADAD------ADLEERLNNLRR 219
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/185 (57%), Positives = 144/185 (77%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M LFG+RKTP ELLR+N+R L +++RE++RERQ L+ QEKK+I +IKK AKQGQM AVK
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVK 60
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
+MAKDL+RTR ++KF +++ +Q VSL+IQTLKS +M AMKGVTKAM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLP 120
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+QKIM EFE+Q M+M E+M DAIDDA+ +D+EEE++ +V+QVLDE+G+++ EL
Sbjct: 121 QIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELA 180
Query: 181 NAPSS 185
P
Sbjct: 181 TLPPP 185
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 156/225 (69%), Gaps = 5/225 (2%)
Query: 3 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVM 62
++FGK TP E L++N+R L+++ RE+ERE++ L+ Q+KKL+SEIKKSAK GQ+ A KV
Sbjct: 6 WVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQ 65
Query: 63 AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 122
AKDL+RTR+ I+KF +K+QLQ +SLRIQ ++S+ M +M T + MNR MNLP L
Sbjct: 66 AKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQL 125
Query: 123 QKIMQEFERQNEKMEMVTEVMGDAIDDAL-EGDDEEEETEELVNQVLDEIGIDINQELVN 181
Q+I EFE+Q++ M E M +AID+ + + DE+EE +E+VN+VLDEIG+D+N +L +
Sbjct: 126 QRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQS 185
Query: 182 APSSTVA-APAVKGKVAQAEATGNDD---GGIDSDLQARLDNLRR 222
P + V+ AP + + E G G D DLQARL+ L++
Sbjct: 186 TPQNLVSNAPIAETAMGIPEPIGAGSEFHGNPDDDLQARLNTLKK 230
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 143/218 (65%), Gaps = 10/218 (4%)
Query: 4 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMA 63
+F K+ P E+LRE+KR + ++ R IE+E LQ++EKKL+ EIK++AK G GA K++A
Sbjct: 3 IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILA 62
Query: 64 KDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQ 123
+ LIR R QI ++Q++G++ Q + + ++ M+G TKAM M++ M+
Sbjct: 63 RQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQA 122
Query: 124 KIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAP 183
K+M+EF++Q+ +M+M TE+M D+IDDAL+ D+ E+ETE+L NQVLDEIGIDI +L +AP
Sbjct: 123 KVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAP 182
Query: 184 SSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 221
KGK+ +A GID +L+ RL LR
Sbjct: 183 ---------KGKIGGKKAEDVGSSGID-ELEKRLAALR 210
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 138/220 (62%)
Query: 4 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMA 63
+F K+ TP + LR +KR + + R IERE LQ +EK+L++EIKK+AK G A K++A
Sbjct: 3 IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILA 62
Query: 64 KDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQ 123
+ L+R R QI ++Q++GV+ Q L ++ ++ MKG TKAM MN+QM
Sbjct: 63 RQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQA 122
Query: 124 KIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAP 183
K++++F++Q+ +++M E+M +AID+ L+ D+ EEETE+L NQVLDEIG+ + +L +AP
Sbjct: 123 KVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAP 182
Query: 184 SSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223
+A + A N + +L+ RL +LRR+
Sbjct: 183 KGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLRRI 222
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 147/219 (67%), Gaps = 16/219 (7%)
Query: 2 SFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
S+LFG K+P E LR ++R L ++ RE++RER L +E+ LI EIK SAK G GA ++
Sbjct: 5 SWLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARI 64
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
A+DL+R R+ +K K+QLQ +SLR+QT+++++ M ++M+G T+ + MN+ MN+P+
Sbjct: 65 QARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPA 124
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVN 181
+ +I Q+FER+NE ME E++ + +DDALE +D+EEE +ELVN+VLDEIG+D++Q L +
Sbjct: 125 MARITQQFERENEIMEQRQEMIDENMDDALE-EDDEEEADELVNKVLDEIGVDLSQGLPD 183
Query: 182 APSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNL 220
A + P +K + +LQARLD L
Sbjct: 184 AATQIGTVPELK---------------TEDNLQARLDEL 207
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 131/220 (59%), Gaps = 9/220 (4%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT ++++E + L + R+I R+R L+ QEK+L EIKK AK G A K
Sbjct: 1 MTSLF-KKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACK 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L++ R Q + Y + S++ +S + + + S M AM TK M +N++M+
Sbjct: 60 VLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPK 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ +Q F+++ KM+M E+M D +D+ E +EEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNL 220
+APS+ P+ AT DG D D++ +L L
Sbjct: 180 HAPSAARKTPSA--------ATAKADGISDEDIERQLKAL 211
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 130/215 (60%), Gaps = 5/215 (2%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT +++RE + L + R I R+R L+ QEK+L EIKK AK G A +
Sbjct: 1 MASLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACR 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L++ R Q + Y + S++ +S + + + S M AM K M +N++M+
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ MQ F+++N KMEM E++ D +DD + D+EEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 215
APS+ P+ ++++G D I+ L+A
Sbjct: 180 KAPSAAKGLPSTSA----SKSSGISDEEIERQLKA 210
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 130/215 (60%), Gaps = 5/215 (2%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT ++++E R L + R I R+R L+ QE++L EIKK AK G A K
Sbjct: 1 MASLF-KKKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACK 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L++ R Q + Y + S++ +S + + + S M AM K M +N++M+
Sbjct: 60 VLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ MQ F+++N KMEM E++ D +DD + DEEEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 215
APS+ P+ + ++A+ D I+ L+A
Sbjct: 180 KAPSAARGLPS----ASTSKASTISDEEIERQLKA 210
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 129/215 (60%), Gaps = 5/215 (2%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT +++RE + L + R I R+R L+ QEK+L EIKK AK G A +
Sbjct: 1 MASLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACR 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L++ R Q + Y + S++ +S + + + S M AM K M +N++M+
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ MQ F+++N KMEM E++ D +DD + ++EEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 215
APS+ P+ A++ G D I+ L+A
Sbjct: 180 KAPSAAKGLPSTSA----AKSKGISDEEIERQLKA 210
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT ++++E R L + R I R+R L+ QEK+L EIKK AK G A K
Sbjct: 1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L+ R Q + + + S++ +S + + + S M AM K M +N++M+
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ MQ F+++N KMEM E++ D +DD +G D+EEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPA 191
APS+ + P+
Sbjct: 180 KAPSAARSLPS 190
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT ++++E R L + R I R+R L+ QEK+L EIKK AK G A K
Sbjct: 1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L+ R Q + + + S++ +S + + + S M AM K M +N++M+
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ MQ F+++N KMEM E++ D +DD +G D+EEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPA 191
APS+ + P+
Sbjct: 180 KAPSAARSLPS 190
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 129/215 (60%), Gaps = 5/215 (2%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT +++++ + L R I R+R L+ QEK+L EIKK AK G A K
Sbjct: 1 MASLF-KKKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACK 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L++ R Q + Y + S++ +S + + + S M AM K M +N++M+
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ MQ F+++N KMEM E++ D +DD + ++EEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 215
APS+ P+ +++TG D I+ L+A
Sbjct: 180 KAPSAAKGLPSASA----SKSTGISDEEIERQLKA 210
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT ++++E R L + R I R+R L+ QEK+L EIKK AK G A +
Sbjct: 1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L+ R Q + + + S++ +S + + + S M AM K M +N++M+
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ MQ F+++N KMEM E++ D +DD +G D+EEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPA 191
APS+ + P+
Sbjct: 180 KAPSAARSLPS 190
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
M+ LF K+KT ++++E R L + R I R+R L+ QEK+L EIKK AK G A +
Sbjct: 1 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
V+AK L+ R Q + + + S++ +S + + + S M AM K M +N++M+
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
+ MQ F+++N KMEM E++ D +DD +G D+EEE++++VNQVLDEIGI+I+ ++
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 NAPSSTVAAPA 191
APS+ + P+
Sbjct: 180 KAPSAARSLPS 190
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 115/184 (62%), Gaps = 7/184 (3%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVK 60
MSF G +KTP + L+++KR L K RE++RE L+ E++ I +IK+ AK G+ K
Sbjct: 1 MSFFGGNKKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAK 60
Query: 61 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
MA DL++ R Q+E+ K+ L VS + T+K+ Q M AM TKAM MN+Q +L
Sbjct: 61 RMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASATKAMSTMNKQTDLV 120
Query: 121 SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELV 180
LQK M E+E+Q +++EM E+M D E D+ +EE ++++++V+DE+ +D Q++
Sbjct: 121 QLQKTMMEYEKQTQRVEMTEEMM----QDMFEDDEVDEEADDILSKVVDEVCLDNYQKM- 175
Query: 181 NAPS 184
PS
Sbjct: 176 --PS 177
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 121/216 (56%), Gaps = 6/216 (2%)
Query: 11 PAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTR 70
P +LLR+ +R L + R IER+ + +Q +E+ + IK++AK+ M + K +AK+++ +R
Sbjct: 14 PKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSR 73
Query: 71 HQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEF 129
+ + Y+ K+Q+ +S+ + +++ + +G K + M +N M P + MQEF
Sbjct: 74 RTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPQMAATMQEF 132
Query: 130 ERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQEL-VNAPSSTVA 188
++ K ++ E + +AID+AL+ +D EEE +E V++VL I + EL V +
Sbjct: 133 SKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIK 192
Query: 189 APAVKGKVAQAE---ATGNDDGGIDSDLQARLDNLR 221
PA K ++ E A G DD +++ARL +R
Sbjct: 193 VPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVR 228
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 106/189 (56%), Gaps = 12/189 (6%)
Query: 3 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVM 62
F F K+ TP EL+++ KR L + R ++ + + + QEKK + IK+ K G + K +
Sbjct: 2 FSFLKKPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTL 61
Query: 63 AKDLIRTRHQIEKFYKLKSQLQGVSLRIQT-LKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
AK+++ +R E+ Y K+Q+ VS+++Q+ L T+ G K T+ M MN + LP
Sbjct: 62 AKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKS-TEIMKMMNDLIKLPE 120
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVN 181
L K+M + K ++ E++ D D ++G+D EEE E VN+++DEI LV+
Sbjct: 121 LNKVMMAMGSEMTKAGIMEEMISDVFD--MQGEDLEEEAEMEVNKIMDEI-------LVS 171
Query: 182 APSSTVAAP 190
P + +AP
Sbjct: 172 GPQVS-SAP 179
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 10/224 (4%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVV 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
+Q M+E ++ K ++ E+ ++D E D++EE EE +D I +I L
Sbjct: 123 IQATMRELSKEMMKAGIIEEM----LEDTFESMDDQEEMEEAAEMEIDRILFEITAGALG 178
Query: 181 NAPSSTVAA---PAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 221
APS A P G +A +E DD +Q+RL LR
Sbjct: 179 KAPSKVTDALPEPEPAGAMAASEGDEEDDEEDLEAMQSRLATLR 222
>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=did2 PE=3 SV=2
Length = 200
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 46 EIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKG 105
++KK+ +G ++ A + IR + + KL S++ VS R+QT + +A+ M G
Sbjct: 35 KVKKAITKGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAG 94
Query: 106 VTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVN 165
V + M + + MNL + ++M +FE Q + + + T M A+ D +E+ + L+
Sbjct: 95 VVRGMDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQ 154
Query: 166 QVLDEIGIDINQELVN---APSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 221
V DE G++ NQ + N P+++V PA + D +LQ RL LR
Sbjct: 155 TVADEAGLEFNQNMNNNLSVPAASVPTPAAPVE--------------DDNLQERLRALR 199
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 7/190 (3%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK K P +L+ E + K +R I+R+ + +Q +E+K+ IK +AK+GQ +
Sbjct: 3 LFGKTQEKPPKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCII 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK++I+++ I K Y K+Q+ V L ++ S + A++ T+ M M + +P
Sbjct: 63 LAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
+Q M++ ++ K ++ E++ +D LEG D+EEE EE +D+I +I L
Sbjct: 123 IQATMRDLSKEMMKAGIIEEML----EDTLEGMDDEEEMEEAAEAEVDKILFEITAGALG 178
Query: 181 NAPSSTVAAP 190
APS P
Sbjct: 179 KAPSKVTDLP 188
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 95/161 (59%)
Query: 27 REIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV 86
+++E++ + + EK ++KK+ +QG M ++ A++ IR ++Q + +L S++ V
Sbjct: 13 KQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAV 72
Query: 87 SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDA 146
+ R++T +++ +M + K+M + R M+L + ++M +FERQ E +++ + + +A
Sbjct: 73 ASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENA 132
Query: 147 IDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAPSSTV 187
++ ++ + L++QV DE G+++ ++ +APS V
Sbjct: 133 MNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKV 173
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK + P +L+ E + K +R I+R+ + +Q +++K+ IK+SAK+G A +
Sbjct: 3 LFGKTQERPPKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVI 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK++++++ + K Y K+ + V + ++ + + +++ T+ M M + LP
Sbjct: 63 LAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
+Q M+E ++ K ++ E+ ++D EG ++++E EE +D I ++ L
Sbjct: 123 IQATMRELSKEMMKAGIIEEM----LEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALG 178
Query: 181 NAPSSTVAA---PAVKG 194
APS A P + G
Sbjct: 179 KAPSKVTDALPEPEITG 195
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
+Q M+E ++ K ++ E+ ++D E D++EE EE +D I +I L
Sbjct: 123 IQATMRELSKEMMKAGIIEEM----LEDTFESMDDQEEMEEAAEMEIDRILFEITAGALG 178
Query: 181 NAPSSTVAA 189
APS A
Sbjct: 179 KAPSKVTDA 187
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
+Q M+E ++ K ++ E+ ++D E D++EE EE +D I +I L
Sbjct: 123 IQATMRELSKEMMKAGIIEEM----LEDTFESMDDQEEMEEEAEMEIDRILFEITAGALG 178
Query: 181 NAPSSTVAA 189
APS A
Sbjct: 179 KAPSKVTDA 187
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 11/225 (4%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVV 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
+Q M+E ++ K ++ E+ ++D E D++EE EE +D I +I L
Sbjct: 123 IQATMRELSKEMMKAGIIEEM----LEDTFESMDDQEEMEEAAEMEIDRILFEITAGALG 178
Query: 181 NAPSSTVAA---PAVKGKVAQAEATGNDDGGIDSD-LQARLDNLR 221
APS A P G +A +E ++ D + +Q+RL LR
Sbjct: 179 KAPSKVTDALPEPEPAGAMAASEEGEEEEDEEDLEAMQSRLATLR 223
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
+Q M+E ++ K ++ E++ +D E D++EE EE +D I +I L
Sbjct: 123 IQATMRELSKEMMKAGIIEEML----EDTFESMDDQEEMEEEAEMEIDRILFEITAGALG 178
Query: 181 NAPSSTVAA 189
APS A
Sbjct: 179 KAPSKVTDA 187
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 103/197 (52%), Gaps = 10/197 (5%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK + P +L+ E + K +R I+R+ + +Q +++K+ IK+SAK+G A +
Sbjct: 3 LFGKTQERPPKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVI 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK+++ ++ + K Y K+ + V + ++ + + +++ T+ M M + +P
Sbjct: 63 LAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
+Q M++ ++ K ++ E++ +D EG ++++E EE +D I +I L
Sbjct: 123 IQATMRDLSKEMMKAGIIEEML----EDTFEGMEDQDEMEEQAEMEIDRILFEITAGALG 178
Query: 181 NAPSSTVAA---PAVKG 194
APS A P + G
Sbjct: 179 KAPSKVTDALPEPEITG 195
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query: 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV 61
LFGK K P EL+ E + K +R ++R+ + +Q +E+K+ +K +AK+GQ V
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 121
+AK++IR+R + K Y K+ + V + ++ + + +++ T+ M M + +P
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 LQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDINQ-ELV 180
++ M+E ++ K ++ E+ ++D E D++EE EE +D I +I L
Sbjct: 123 IRATMRELSKEMMKAGIIEEM----LEDTFESMDDQEEMEEAAEMEIDRILFEITAGALG 178
Query: 181 NAPSSTVAA 189
APS A
Sbjct: 179 KAPSKVTDA 187
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B
PE=2 SV=1
Length = 199
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 54 GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113
G M ++ A++ IR ++Q F ++ +++ V+ R+QT + + ++M GV K+M
Sbjct: 43 GNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 114 NRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI 173
+ MNL + +M +FE Q E +++ T+ M + + + + + + L+ ++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 174 DINQELVNAPSSTVAAPAVKGKVAQAE 200
D+N EL + +V VA AE
Sbjct: 163 DLNMELPQGQTGSVGTS-----VASAE 184
>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b
PE=2 SV=1
Length = 199
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 52 KQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMG 111
++G M ++ A++ IR ++Q F ++ +++ V+ R+QT + + ++M GV K M
Sbjct: 41 QKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMD 100
Query: 112 QMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEI 171
+ MNL + +M++FERQ E +++ T M D++ + + + L+ ++ DE
Sbjct: 101 ATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEA 160
Query: 172 GIDINQELVNAPSSTVAAPAVKGKVAQAE 200
G+D+N EL + +V VA AE
Sbjct: 161 GLDLNMELPQGQTGSVGTS-----VASAE 184
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2
PE=2 SV=2
Length = 199
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 73/137 (53%)
Query: 54 GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113
G ++ A++ IR ++Q F ++ +++ V+ R+QT + + ++M GV K+M
Sbjct: 43 GNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 114 NRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI 173
R MNL + +M +FE Q E +++ T+ M D + + + + L+ ++ DE G+
Sbjct: 103 LRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 174 DINQELVNAPSSTVAAP 190
D+N EL + +V A
Sbjct: 163 DLNMELPQGQTGSVGAS 179
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B
PE=1 SV=1
Length = 199
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 54 GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113
G M ++ A++ IR ++Q F ++ +++ V+ R+QT + + ++M GV K+M
Sbjct: 43 GNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 114 NRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI 173
+ MNL + +M +FE Q E +++ T+ M D + + + + L+ ++ DE G+
Sbjct: 103 LKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 174 DINQELVNAPSSTVAAPAVKGKVAQAE 200
D+N EL + +V VA AE
Sbjct: 163 DLNMELPQGQTGSVGTS-----VASAE 184
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis
GN=chmp1b PE=2 SV=1
Length = 199
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 74/134 (55%)
Query: 54 GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113
G ++ A++ IR ++Q F ++ +++ V+ R+QT + + ++M GV K+M
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTT 102
Query: 114 NRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI 173
+ MNL + +M +FE Q E +++ T+ M D + + + + + L++++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 174 DINQELVNAPSSTV 187
D+N EL + +V
Sbjct: 163 DLNMELPQGQTGSV 176
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2
SV=1
Length = 199
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 54 GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113
G M ++ A++ IR ++Q F ++ +++ V+ R+QT + + ++M GV K+M
Sbjct: 43 GNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 114 NRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI 173
+ MNL + +M +FE Q E +++ T+ M D + + + + L+ ++ DE G+
Sbjct: 103 LKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGL 162
Query: 174 DINQELVNAPSSTVAAPAVKGKVAQAE 200
D+N EL + +V VA AE
Sbjct: 163 DLNMELPQGQTGSVGTS-----VASAE 184
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1
PE=1 SV=1
Length = 199
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 54 GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113
G M ++ A++ IR ++Q F ++ +++ V+ R+QT + + ++M GV K+M
Sbjct: 43 GNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 114 NRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI 173
+ MNL + +M +FE Q E +++ T+ M D + + + + L+ ++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 174 DINQELVNAPSSTVAAPAVKGKVAQAE 200
D+N EL + +V VA AE
Sbjct: 163 DLNMELPQGQTGSVGTS-----VASAE 184
>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a
PE=2 SV=1
Length = 198
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 83/144 (57%)
Query: 45 SEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMK 104
+++KK+ +Q + +V A++ IR +++ + ++ S++ V+ ++QT + + + + M
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMT 90
Query: 105 GVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELV 164
VTKA+ + M+L + +M +FE Q + +++ T VM D++ A +++ ++L+
Sbjct: 91 QVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLI 150
Query: 165 NQVLDEIGIDINQELVNAPSSTVA 188
Q+ +E G+++ +L P+ A
Sbjct: 151 LQIAEESGLEVEDQLSQLPAGASA 174
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b
PE=2 SV=1
Length = 199
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 74/134 (55%)
Query: 54 GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113
G ++ A++ IR ++Q F ++ +++ V+ R+QT + + ++M GV K+M
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 114 NRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI 173
+ MNL + +M +FE Q E +++ T+ M D + + + + + L++++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 174 DINQELVNAPSSTV 187
D++ EL + +V
Sbjct: 163 DLSMELPQGQTGSV 176
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a
PE=1 SV=1
Length = 196
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 45 SEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMK 104
+++KK+ +Q + +V A++ IR +++ + ++ S++ V+ ++QT + + + + M
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 105 GVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELV 164
VTKA+ + M+L + +M FE+Q + +++ T VM D++ A +E+ + L+
Sbjct: 91 QVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLI 150
Query: 165 NQVLDEIGIDINQELVNAP--SSTVAAPAVKGK 195
Q+ +E G+++ +L P +S V +V+ +
Sbjct: 151 VQIAEENGLEVLDQLSQLPEGASAVGESSVRSQ 183
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 97/177 (54%), Gaps = 8/177 (4%)
Query: 14 LLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQI 73
+LR+N R ++KS+RE+ LQ + ++LI KKSAK+ + V++ AK+L + Q
Sbjct: 23 VLRKNGRNIEKSLREL----TVLQNKTQQLI---KKSAKKNDVRTVRLYAKELYQINKQY 75
Query: 74 EKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQN 133
++ Y ++QL V ++I + M M ++N + LP L+ M E E++
Sbjct: 76 DRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKEL 135
Query: 134 EKMEMVTEVMGDAIDDALE-GDDEEEETEELVNQVLDEIGIDINQELVNAPSSTVAA 189
K +++E++ D ++ + G++ +E +E VN+++++ + + + P+ +AA
Sbjct: 136 MKSGIISEMVDDTMESVGDVGEEMDEAVDEEVNKIVEQYTNEKFKNVDQVPTVELAA 192
>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A
PE=2 SV=1
Length = 196
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
Query: 45 SEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMK 104
+++KK+ Q + +V A++ IR +++ + ++ S++ V+ ++QT + + + + M
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 105 GVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELV 164
VTKA+ + M+L + +M FE+Q + +++ T VM D++ A +E+ + L+
Sbjct: 91 QVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLI 150
Query: 165 NQVLDEIGIDINQELVNAP--SSTVAAPAVKGK 195
Q+ +E G+++ +L P +S V +V+ +
Sbjct: 151 MQIAEENGLEVLDQLSQLPEGASAVGESSVRSQ 183
>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A
PE=1 SV=1
Length = 196
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
Query: 45 SEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMK 104
+++KK+ Q + +V A++ IR +++ + ++ S++ V+ ++QT + + + + M
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 105 GVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELV 164
VTKA+ + M+L + +M FE+Q + +++ T VM D++ A +E+ + L+
Sbjct: 91 QVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLI 150
Query: 165 NQVLDEIGIDINQELVNAP--SSTVAAPAVKGK 195
Q+ +E G+++ +L P +S V +V+ +
Sbjct: 151 MQIAEENGLEVLDQLSQLPEGASAVGESSVRSQ 183
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a
PE=2 SV=1
Length = 196
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 82/139 (58%)
Query: 45 SEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMK 104
+++KK+ +Q + +V A++ IR +++ + ++ S++ V+ ++QT + + + + M
Sbjct: 31 AKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 105 GVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELV 164
VTKA+ + M+L + +M +F++Q + +++ T VM D++ A+ +E+ + L+
Sbjct: 91 QVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLI 150
Query: 165 NQVLDEIGIDINQELVNAP 183
Q+ +E G+++ +L P
Sbjct: 151 VQIAEENGLEVMDQLNQLP 169
>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2
OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1
Length = 200
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 23/206 (11%)
Query: 26 IREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQG 85
+ +IERE E+ + IK S K+ + K +A++++ +R +++ Y+ K+Q+
Sbjct: 7 LSDIERE-------ERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNS 59
Query: 86 VSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMG 144
+S+ + +++ + +G K + M +N M P + MQ F ++ K ++ E +
Sbjct: 60 ISMHLGESIATAVTVGNLSKS-GEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVS 118
Query: 145 DAIDDALEGDDEEEETEELVNQVLDEIGIDINQELVNAP-SSTVAAPAVKGKVAQAEATG 203
DA+D+AL+ +D EEE EE V++VL I + EL A + PA K AE
Sbjct: 119 DAVDNALDSEDIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQK-----AETLH 173
Query: 204 NDDG---GIDSD-----LQARLDNLR 221
+D G+D++ ++ RL N+R
Sbjct: 174 GEDAIVEGVDAEEELEAIRYRLANVR 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,177,704
Number of Sequences: 539616
Number of extensions: 2869742
Number of successful extensions: 19550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 551
Number of HSP's that attempted gapping in prelim test: 18935
Number of HSP's gapped (non-prelim): 1086
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)