Query 043389
Match_columns 223
No_of_seqs 138 out of 763
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230 Vacuolar assembly/sort 100.0 2.3E-52 4.9E-57 335.4 27.2 222 1-223 1-224 (224)
2 KOG3229 Vacuolar sorting prote 100.0 3.2E-46 7E-51 302.2 23.0 219 4-222 3-227 (227)
3 KOG3231 Predicted assembly/vac 100.0 1.8E-42 3.8E-47 272.0 23.7 207 3-222 2-208 (208)
4 KOG3232 Vacuolar assembly/sort 100.0 1.6E-38 3.6E-43 251.1 25.3 199 13-223 5-203 (203)
5 PF03357 Snf7: Snf7; InterPro 99.9 6.6E-27 1.4E-31 188.9 10.5 168 17-186 1-170 (171)
6 KOG1656 Protein involved in gl 99.9 8.1E-25 1.7E-29 177.5 20.1 181 1-188 4-197 (221)
7 PTZ00464 SNF-7-like protein; P 99.9 2.4E-24 5.1E-29 179.9 21.5 186 1-189 1-195 (211)
8 PTZ00446 vacuolar sorting prot 99.9 4.7E-22 1E-26 163.1 22.0 166 1-170 1-180 (191)
9 KOG2910 Uncharacterized conser 99.9 5.6E-19 1.2E-23 142.2 23.5 178 1-190 1-182 (209)
10 KOG1655 Protein involved in va 99.8 5.2E-16 1.1E-20 125.6 21.9 170 1-173 1-176 (218)
11 COG5491 VPS24 Conserved protei 99.4 1.2E-11 2.6E-16 102.4 16.2 185 29-222 5-201 (204)
12 KOG2911 Uncharacterized conser 99.4 6.3E-11 1.4E-15 106.6 20.0 158 13-172 229-387 (439)
13 COG5491 VPS24 Conserved protei 98.4 1.4E-05 3.1E-10 66.5 15.4 132 36-176 5-149 (204)
14 PTZ00464 SNF-7-like protein; P 98.4 0.00027 5.9E-09 59.4 21.8 165 7-184 12-193 (211)
15 PTZ00446 vacuolar sorting prot 98.4 9.3E-05 2E-09 61.1 18.3 143 21-170 24-176 (191)
16 KOG3229 Vacuolar sorting prote 98.2 0.00045 9.7E-09 57.1 18.5 167 11-189 8-187 (227)
17 PRK10698 phage shock protein P 98.1 0.00097 2.1E-08 56.5 18.8 131 7-137 21-176 (222)
18 PF04012 PspA_IM30: PspA/IM30 97.7 0.01 2.3E-07 49.8 18.9 138 8-145 21-186 (221)
19 TIGR02977 phageshock_pspA phag 97.7 0.0086 1.9E-07 50.5 18.2 129 7-135 21-174 (219)
20 KOG1656 Protein involved in gl 97.6 0.019 4.1E-07 47.6 18.8 159 23-190 20-189 (221)
21 PF03357 Snf7: Snf7; InterPro 97.5 0.00039 8.5E-09 55.7 6.7 147 25-178 2-156 (171)
22 KOG3230 Vacuolar assembly/sort 97.4 0.015 3.3E-07 47.9 14.6 162 12-181 18-183 (224)
23 KOG3231 Predicted assembly/vac 97.0 0.055 1.2E-06 43.6 14.2 155 13-182 18-183 (208)
24 COG1842 PspA Phage shock prote 96.4 0.53 1.1E-05 40.0 20.7 130 8-140 22-179 (225)
25 PF03398 Ist1: Regulator of Vp 93.8 0.81 1.8E-05 36.9 9.7 153 19-174 1-164 (165)
26 KOG1655 Protein involved in va 92.8 4.9 0.00011 33.4 16.4 147 22-172 17-171 (218)
27 COG1937 Uncharacterized protei 90.7 2.1 4.5E-05 31.1 7.6 50 68-117 7-56 (89)
28 KOG2910 Uncharacterized conser 88.7 13 0.00027 30.9 18.1 95 21-126 13-116 (209)
29 PF02583 Trns_repr_metal: Meta 88.4 5.4 0.00012 28.5 8.3 77 69-166 4-81 (85)
30 PRK15039 transcriptional repre 87.5 5.7 0.00012 28.9 8.0 49 69-117 8-56 (90)
31 PF08569 Mo25: Mo25-like; Int 85.3 6 0.00013 35.6 8.7 65 1-69 1-75 (335)
32 KOG2911 Uncharacterized conser 85.1 28 0.0006 32.4 12.8 150 19-176 228-387 (439)
33 PRK11352 regulator protein Frm 83.9 11 0.00023 27.5 8.0 49 69-117 8-56 (91)
34 PF05816 TelA: Toxic anion res 80.0 44 0.00096 29.9 13.5 45 1-45 75-130 (333)
35 KOG3232 Vacuolar assembly/sort 79.1 34 0.00073 28.0 18.2 88 28-117 6-102 (203)
36 PRK09720 cybC cytochrome b562; 75.2 23 0.00049 26.3 7.3 32 46-77 68-99 (100)
37 PRK15058 cytochrome b562; Prov 71.5 30 0.00066 26.8 7.6 31 46-76 96-126 (128)
38 PRK07352 F0F1 ATP synthase sub 52.6 1.2E+02 0.0026 24.3 15.4 17 116-132 154-170 (174)
39 PF08946 Osmo_CC: Osmosensory 51.3 42 0.00091 21.2 4.1 35 11-45 6-40 (46)
40 PRK09343 prefoldin subunit bet 50.7 45 0.00098 25.3 5.2 39 18-56 79-117 (121)
41 PRK05431 seryl-tRNA synthetase 49.0 2.2E+02 0.0049 26.4 11.2 69 18-92 29-98 (425)
42 PF11068 YlqD: YlqD protein; 48.0 1.2E+02 0.0026 23.5 7.3 30 19-48 22-51 (131)
43 KOG2027 Spindle pole body prot 44.2 2.6E+02 0.0057 25.8 13.5 138 34-175 11-161 (388)
44 PF10158 LOH1CR12: Tumour supp 42.5 1.6E+02 0.0035 22.8 12.2 76 34-120 45-120 (131)
45 PF07361 Cytochrom_B562: Cytoc 42.2 1.4E+02 0.003 22.0 7.6 32 46-77 71-102 (103)
46 PF10593 Z1: Z1 domain; Inter 41.7 45 0.00097 28.5 4.4 36 1-36 172-215 (239)
47 COG3783 CybC Soluble cytochrom 41.0 1.5E+02 0.0032 21.9 7.3 30 46-75 68-97 (100)
48 CHL00019 atpF ATP synthase CF0 40.3 2E+02 0.0043 23.2 16.4 39 12-50 50-88 (184)
49 PF01452 Rota_NSP4: Rotavirus 39.2 91 0.002 25.0 5.3 43 3-48 81-125 (173)
50 PF04065 Not3: Not1 N-terminal 39.1 2.3E+02 0.005 24.2 8.2 103 28-136 46-148 (233)
51 PF10234 Cluap1: Clusterin-ass 38.8 2.7E+02 0.0058 24.4 11.8 84 12-95 164-260 (267)
52 PF11500 Cut12: Spindle pole b 36.2 2.2E+02 0.0048 22.7 9.9 67 18-92 71-137 (152)
53 PF02403 Seryl_tRNA_N: Seryl-t 35.9 1.7E+02 0.0037 21.2 10.9 68 19-92 31-99 (108)
54 PF05852 DUF848: Gammaherpesvi 35.8 2.2E+02 0.0048 22.5 10.4 34 62-95 42-75 (146)
55 COG1382 GimC Prefoldin, chaper 34.9 1.4E+02 0.003 22.9 5.7 41 12-52 72-112 (119)
56 PRK13989 cell division topolog 34.1 20 0.00044 25.6 0.9 17 1-17 4-20 (84)
57 TIGR03752 conj_TIGR03752 integ 34.1 4.2E+02 0.009 25.2 10.4 36 17-52 59-94 (472)
58 TIGR02338 gimC_beta prefoldin, 33.4 2E+02 0.0043 21.2 8.7 77 68-144 11-87 (110)
59 PF06305 DUF1049: Protein of u 32.5 83 0.0018 20.7 3.8 23 20-42 44-66 (68)
60 TIGR00414 serS seryl-tRNA synt 31.3 4.3E+02 0.0092 24.5 11.7 72 17-92 30-101 (418)
61 TIGR02978 phageshock_pspC phag 31.3 92 0.002 23.8 4.2 33 3-39 74-106 (121)
62 PF01920 Prefoldin_2: Prefoldi 30.9 1.2E+02 0.0027 21.5 4.8 30 21-50 66-95 (106)
63 PF07743 HSCB_C: HSCB C-termin 30.8 1.7E+02 0.0038 19.8 8.5 48 27-78 27-74 (78)
64 PRK07857 hypothetical protein; 30.4 2.3E+02 0.0051 21.2 6.3 37 19-55 30-66 (106)
65 PHA03162 hypothetical protein; 29.8 58 0.0013 25.4 2.8 39 6-53 4-42 (135)
66 PF04521 Viral_P18: ssRNA posi 29.6 1.7E+02 0.0036 22.4 5.2 38 25-62 73-110 (120)
67 KOG2150 CCR4-NOT transcription 28.4 1.5E+02 0.0032 28.7 5.8 29 27-59 45-73 (575)
68 PF02416 MttA_Hcf106: mttA/Hcf 28.2 1.1E+02 0.0023 19.8 3.5 32 4-40 16-47 (53)
69 PRK13455 F0F1 ATP synthase sub 27.9 3.2E+02 0.0069 21.9 17.1 39 12-50 53-91 (184)
70 PF12958 DUF3847: Protein of u 27.4 2.4E+02 0.0052 20.3 8.2 32 21-52 5-36 (86)
71 TIGR01215 minE cell division t 27.4 32 0.00069 24.4 1.0 17 1-17 4-20 (81)
72 COG0172 SerS Seryl-tRNA synthe 27.0 5.3E+02 0.012 24.2 10.7 69 18-91 30-99 (429)
73 TIGR02338 gimC_beta prefoldin, 26.6 2.2E+02 0.0048 20.9 5.6 29 21-49 71-99 (110)
74 PF04799 Fzo_mitofusin: fzo-li 26.5 3.1E+02 0.0068 22.3 6.7 24 15-38 118-141 (171)
75 PF10883 DUF2681: Protein of u 25.9 1.9E+02 0.0041 20.9 4.8 26 23-48 29-54 (87)
76 KOG1566 Conserved protein Mo25 25.8 1.3E+02 0.0029 27.0 4.7 29 1-33 1-30 (342)
77 PRK13428 F0F1 ATP synthase sub 24.9 5.7E+02 0.012 23.8 18.0 131 12-145 27-166 (445)
78 PF04508 Pox_A_type_inc: Viral 24.8 1.1E+02 0.0025 16.4 2.6 17 21-37 5-21 (23)
79 PLN03086 PRLI-interacting fact 23.7 6.9E+02 0.015 24.4 9.6 32 67-99 38-69 (567)
80 COG0851 MinE Septum formation 23.6 34 0.00074 24.7 0.5 17 1-17 4-20 (88)
81 PF08651 DASH_Duo1: DASH compl 23.5 2.7E+02 0.0058 19.5 7.7 47 99-147 20-66 (78)
82 PRK00191 tatA twin arginine tr 23.5 41 0.00088 24.2 0.9 31 4-39 18-48 (84)
83 PRK04863 mukB cell division pr 23.1 1E+03 0.022 26.2 19.8 128 4-137 429-571 (1486)
84 PHA02562 46 endonuclease subun 22.9 6.4E+02 0.014 23.7 15.4 27 22-48 172-198 (562)
85 PRK13988 cell division topolog 21.8 39 0.00084 24.9 0.6 15 2-16 8-22 (97)
86 PRK14474 F0F1 ATP synthase sub 20.5 5.4E+02 0.012 21.9 17.2 79 57-138 83-162 (250)
No 1
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-52 Score=335.41 Aligned_cols=222 Identities=64% Similarity=0.897 Sum_probs=202.9
Q ss_pred CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLK 80 (223)
Q Consensus 1 ~~~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~ 80 (223)
|. +||+++||.|.+|+++|.|.+++|+|+|+..+++.++|++..+||+.+|.|+..++||+|+++||.|+|+.+++.++
T Consensus 1 m~-lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~k 79 (224)
T KOG3230|consen 1 MD-LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMK 79 (224)
T ss_pred CC-cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHH
Q 043389 81 SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEET 160 (223)
Q Consensus 81 ~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~ 160 (223)
++|.+|+.++++.+++..++.+|++++++|..||+.||||+++++|.+|++|++.|++.+|||+++++++++++++|||.
T Consensus 80 aqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEt 159 (224)
T KOG3230|consen 80 AQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEET 159 (224)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHhcchhhhhhccCCCCCCCccccch-hhhhhhccC-CCCCCcHHHHHHHHHHhhcC
Q 043389 161 EELVNQVLDEIGIDINQELVNAPSSTVAAPAVKG-KVAQAEATG-NDDGGIDSDLQARLDNLRRM 223 (223)
Q Consensus 161 d~l~~qvldE~~~~~~~~l~~~P~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~l~~RL~~Lr~~ 223 (223)
|++|+|||||+|++++.+|.++|.+...+|.... ...+++.++ ++....+|||++||++||+.
T Consensus 160 d~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk~ 224 (224)
T KOG3230|consen 160 DDLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRKD 224 (224)
T ss_pred HHHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhcC
Confidence 9999999999999999999999996665554321 111222222 12246799999999999974
No 2
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-46 Score=302.23 Aligned_cols=219 Identities=26% Similarity=0.443 Sum_probs=190.0
Q ss_pred ccCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 4 LFGK--RKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKS 81 (223)
Q Consensus 4 ~Fg~--~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~ 81 (223)
+||+ +|+|+|++|+|++.||+..|.|||+++.+++++++.+..||+++|+||..+|++||+++++.|+.+.+||..++
T Consensus 3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA 82 (227)
T KOG3229|consen 3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA 82 (227)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4554 38999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHH
Q 043389 82 QLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETE 161 (223)
Q Consensus 82 ~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d 161 (223)
+|+||.++|..+.++..++++|++++.+|+.+|+++.+|++..||.+|+++|++.|+|+||++++|+++.|.+++++++|
T Consensus 83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d 162 (227)
T KOG3229|consen 83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD 162 (227)
T ss_pred HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHhcchhhhhhccCCCCC----CCccccchhhhhhhccCCCCCCcHHHHHHHHHHhhc
Q 043389 162 ELVNQVLDEIGIDINQELVNAPSST----VAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222 (223)
Q Consensus 162 ~l~~qvldE~~~~~~~~l~~~P~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~ 222 (223)
++|++||.+|...-.+.+|.+|+.. .+.++.++....++..+.+..++..++..||++||+
T Consensus 163 eEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs 227 (227)
T KOG3229|consen 163 EEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS 227 (227)
T ss_pred HHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence 9999999999877666666666544 122222222111111111112456788889999995
No 3
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-42 Score=272.00 Aligned_cols=207 Identities=39% Similarity=0.585 Sum_probs=194.5
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 3 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQ 82 (223)
Q Consensus 3 ~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~ 82 (223)
+|||| |||+|..|++.|.||++.|.|+|+.++++++|++|+.+||+.++.||.++||+||+++|..|++..+-+...++
T Consensus 2 niF~K-ktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~k 80 (208)
T KOG3231|consen 2 NIFKK-KTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSK 80 (208)
T ss_pred CcccC-CCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 68987 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHH
Q 043389 83 LQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEE 162 (223)
Q Consensus 83 L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~ 162 (223)
+.+++.|-..+.++.+++++|...++.|+.+|+.|+|+++..+|.+|+...++|++.+|||+|++++.+|..++++|.++
T Consensus 81 i~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~a 160 (208)
T KOG3231|consen 81 ITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQA 160 (208)
T ss_pred hhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhhhhccCCCCCCCccccchhhhhhhccCCCCCCcHHHHHHHHHHhhc
Q 043389 163 LVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222 (223)
Q Consensus 163 l~~qvldE~~~~~~~~l~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~ 222 (223)
+|++||||+|+++++++.++|+....+.++++ ....+||++.|++||.
T Consensus 161 iVNqVLDEIGIEisgKma~~P~a~s~~~~st~------------kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 161 IVNQVLDEIGIEISGKMAKAPSARSLPSASTS------------KATISDIERQLAALRS 208 (208)
T ss_pred HHHHHHHHhhhhhcchhccCCccCCCCccccC------------CCcHHHHHHHHHHhcC
Confidence 99999999999999999999974433322221 2568889999999984
No 4
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-38 Score=251.05 Aligned_cols=199 Identities=27% Similarity=0.445 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 13 ELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT 92 (223)
Q Consensus 13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~ 92 (223)
..+....|+|+++.++|.|+..+|+++||.++.++|+|+++||.+.|||||.++||+|++..+|+++.+++|+|..++++
T Consensus 5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT 84 (203)
T KOG3232|consen 5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT 84 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhc
Q 043389 93 LKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIG 172 (223)
Q Consensus 93 a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~ 172 (223)
|..+..++++|.++++.|....+.||+++|..+|+.|+.+|+++++..+.|.++|+++..-+.|.++||.|+++|+||+|
T Consensus 85 avtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaG 164 (203)
T KOG3232|consen 85 AVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAG 164 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999887777899999999999999999
Q ss_pred chhhhhhccCCCCCCCccccchhhhhhhccCCCCCCcHHHHHHHHHHhhcC
Q 043389 173 IDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRRM 223 (223)
Q Consensus 173 ~~~~~~l~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~~ 223 (223)
++++..||....++.+.+ ++ ++ ..++|+|.+||++||..
T Consensus 165 lElnq~lp~~~~~a~~~~--t~----~~------~~e~d~L~qRLaaLR~~ 203 (203)
T KOG3232|consen 165 LELNQELPQNVVPAISVK--TS----AV------VDEEDDLTQRLAALRAR 203 (203)
T ss_pred hhhhhcCCCCCCCCcCCC--Cc----cc------cchhhHHHHHHHHHhcC
Confidence 999988875321111111 11 11 23459999999999974
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.94 E-value=6.6e-27 Score=188.88 Aligned_cols=168 Identities=33% Similarity=0.489 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 17 ENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKST 96 (223)
Q Consensus 17 ~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~ 96 (223)
++++.|+.+++.|++.+.+|+.+.+++..+|++++++|+...|++|++..++.+++..+++....+|+++..+|+++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhcchh-
Q 043389 97 QAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDI- 175 (223)
Q Consensus 97 ~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~~~~- 175 (223)
..++.+|+.++++|+.+|+.+++++|..+|++|.++++.+++++++|++.++.. ++++++|++++++++++|++.+.
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~ 158 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE 158 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999988654 23466789999999999999988
Q ss_pred -hhhhccCCCCC
Q 043389 176 -NQELVNAPSST 186 (223)
Q Consensus 176 -~~~l~~~P~~~ 186 (223)
...||++|+++
T Consensus 159 ~~~~lp~~P~~~ 170 (171)
T PF03357_consen 159 EKQQLPSVPSTE 170 (171)
T ss_dssp -SS-SS---HH-
T ss_pred ccccCCcCCCCC
Confidence 77888888764
No 6
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.1e-25 Score=177.50 Aligned_cols=181 Identities=22% Similarity=0.367 Sum_probs=142.7
Q ss_pred CccccCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 043389 1 MSFLFGKR-----KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEK 75 (223)
Q Consensus 1 ~~~~Fg~~-----~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~ 75 (223)
|++|||+. +||++.+. .||.+...|++ +-+..++++..++...+++.-..+-|...+++-|+|.+..+
T Consensus 4 ~~~~FG~~k~~~~~t~~eaI~----kLrEteemL~K---Kqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~q 76 (221)
T KOG1656|consen 4 FSRLFGGMKQEAKPTPQEAIQ----KLRETEEMLEK---KQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQ 76 (221)
T ss_pred HHHHhCcccccCCCChHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 68999974 56766665 69999999864 55555666777766645544444445544555666666778
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhc--cc
Q 043389 76 FYKLKSQLQGVSLR---IQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAID--DA 150 (223)
Q Consensus 76 l~~~~~~L~~v~~q---l~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~--~~ 150 (223)
|.+....|.+|..| |++|+.+..|..+|+.++++||.+++.||+++|+.+|+++.+|.+.+..|+++|+.+++ ..
T Consensus 77 L~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~ 156 (221)
T KOG1656|consen 77 LAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGAD 156 (221)
T ss_pred HHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 88999999999988 77899999999999999999999999999999999999999999999999999999986 45
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcchhhh---hhccCCCCCCC
Q 043389 151 LEGDDEEEETEELVNQVLDEIGIDINQ---ELVNAPSSTVA 188 (223)
Q Consensus 151 ~d~~~~eee~d~l~~qvldE~~~~~~~---~l~~~P~~~~~ 188 (223)
+|++++..|+|+|-+..|+.-.+++.. .||++|+...|
T Consensus 157 ~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~~lP 197 (221)
T KOG1656|consen 157 FDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPSIALP 197 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccC
Confidence 888888888888888888877666543 35555554443
No 7
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.93 E-value=2.4e-24 Score=179.93 Aligned_cols=186 Identities=18% Similarity=0.303 Sum_probs=147.6
Q ss_pred CccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH----H
Q 043389 1 MSFLFGKRK-TPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE----K 75 (223)
Q Consensus 1 ~~~~Fg~~~-~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~----~ 75 (223)
|++|||+++ .|+..++++...+|.....|++.+.+|+.+..+.+..+++....+. .+.|..|..++|+||.++ +
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~ 79 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDM 79 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999864 6778888998999999999999999999988888877776543222 346778889999999765 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCC
Q 043389 76 FYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDD 155 (223)
Q Consensus 76 l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~ 155 (223)
+.....+|+.+.+.|+++..+..|+.+|+.++++|+.+|+.|++++|+.+|+++.++++..+.|+++|+.+++.. ++.
T Consensus 80 l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~ 157 (211)
T PTZ00464 80 MMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDI 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCC
Confidence 667777888888999999999999999999999999999999999999999999999999999999999876522 123
Q ss_pred cHHHHHHHHHHHHHHhcchh----hhhhccCCCCCCCc
Q 043389 156 EEEETEELVNQVLDEIGIDI----NQELVNAPSSTVAA 189 (223)
Q Consensus 156 ~eee~d~l~~qvldE~~~~~----~~~l~~~P~~~~~~ 189 (223)
+++|++++++.+..|...+. -...|++|+..+|.
T Consensus 158 DEdELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~ 195 (211)
T PTZ00464 158 DEDEMLGELDALDFDMEKEADASYLADALAVPGTKLPD 195 (211)
T ss_pred CHHHHHHHHHHHHHHHhccccchhhhccccCCCCCCCC
Confidence 45566666666665543322 23456666665543
No 8
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.91 E-value=4.7e-22 Score=163.06 Aligned_cols=166 Identities=18% Similarity=0.322 Sum_probs=133.6
Q ss_pred CccccCCCC-Ch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 043389 1 MSFLFGKRK-TP---------AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTR 70 (223)
Q Consensus 1 ~~~~Fg~~~-~p---------~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~r 70 (223)
|+|||||++ .| .+.+.+++..||.++..|++...+|+....++...+|+++++|+... |..++|+|
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrK 76 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRK 76 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHH
Confidence 789999863 34 13577888999999999999999999999999999999999998554 55577777
Q ss_pred HHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhh
Q 043389 71 HQIE-KFYKLKSQLQGV---SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDA 146 (223)
Q Consensus 71 k~~~-~l~~~~~~L~~v---~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~ 146 (223)
|++. ++.++.+++..+ ...|++++.+..|+.+|+.++++|+.+|+.|++++|+.+|+++.++++..+.|+++++.+
T Consensus 77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~ 156 (191)
T PTZ00446 77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFN 156 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7664 444555555555 556889999999999999999999999999999999999999999999999999999976
Q ss_pred hcccCCCCCcHHHHHHHHHHHHHH
Q 043389 147 IDDALEGDDEEEETEELVNQVLDE 170 (223)
Q Consensus 147 l~~~~d~~~~eee~d~l~~qvldE 170 (223)
+.+..|+++.++|++++.+.-+++
T Consensus 157 ~~~~~DEdELe~ELe~Le~e~l~~ 180 (191)
T PTZ00446 157 LLNNVDDDEIDKELDLLKEQTMEE 180 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 544455555555555555544443
No 9
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=99.85 E-value=5.6e-19 Score=142.23 Aligned_cols=178 Identities=15% Similarity=0.279 Sum_probs=150.4
Q ss_pred CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-HH
Q 043389 1 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFY-KL 79 (223)
Q Consensus 1 ~~~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~-~~ 79 (223)
||.+|||+ .+-.-...++..|+.+-+.|.+..+++++.....+..+|++++.|....|+. ++++++++..|+ ++
T Consensus 1 MG~lfsK~-~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAll----lLKkKryQE~Ll~qt 75 (209)
T KOG2910|consen 1 MGNLFSKK-SRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALL----LLKKKRYQEELLTQT 75 (209)
T ss_pred CCccccCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH----HHHHHHHHHHHHHHH
Confidence 89999983 3444456678899999999999999999999999999999999999888776 689999988775 77
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCc
Q 043389 80 KSQLQGVS---LRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDE 156 (223)
Q Consensus 80 ~~~L~~v~---~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~ 156 (223)
..+|..++ +.|+.+.....|+.+++.++.+++++|+.|+++.|+.+|++-.+.+++.+.|++|+++.|.. ++
T Consensus 76 ~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~d 150 (209)
T KOG2910|consen 76 DNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----ED 150 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----cc
Confidence 77777766 45778999999999999999999999999999999999999999999999999999999984 34
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhccCCCCCCCcc
Q 043389 157 EEETEELVNQVLDEIGIDINQELVNAPSSTVAAP 190 (223)
Q Consensus 157 eee~d~l~~qvldE~~~~~~~~l~~~P~~~~~~~ 190 (223)
++++.++++.+..|...+ .++|.+|+..++.|
T Consensus 151 Eddi~~EldaLese~~~e--~e~PevPs~ep~lP 182 (209)
T KOG2910|consen 151 EDDILAELDALESELEVE--AELPEVPSTEPELP 182 (209)
T ss_pred HHHHHHHHHHHHHHhhhh--hhcCCCCCCCCCcc
Confidence 566777777777666443 66899998854433
No 10
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.2e-16 Score=125.64 Aligned_cols=170 Identities=21% Similarity=0.346 Sum_probs=152.6
Q ss_pred CccccCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH----
Q 043389 1 MSFLFGKR--KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE---- 74 (223)
Q Consensus 1 ~~~~Fg~~--~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~---- 74 (223)
|++|||++ +.|-..+.+|+..+.+....++..|.+|+.+--+++.+|++.-...-..+.|.-|-.+++.||+++
T Consensus 1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d 80 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKD 80 (218)
T ss_pred CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999975 457889999999999999999999999999999999999999666667888999999999999765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCC
Q 043389 75 KFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGD 154 (223)
Q Consensus 75 ~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~ 154 (223)
.|.+....|+.+.+..++...+..++.+|+.+++.|+...+.+++++|+.+-+++..-|+..++|+|+++..++.. +
T Consensus 81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p---e 157 (218)
T KOG1655|consen 81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP---D 157 (218)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---C
Confidence 6778888999999999999999999999999999999999999999999999999999999999999999988754 2
Q ss_pred CcHHHHHHHHHHHHHHhcc
Q 043389 155 DEEEETEELVNQVLDEIGI 173 (223)
Q Consensus 155 ~~eee~d~l~~qvldE~~~ 173 (223)
.++++++.+++.+.+|...
T Consensus 158 ide~dL~aELdaL~~E~d~ 176 (218)
T KOG1655|consen 158 IDEADLDAELDALGQELDM 176 (218)
T ss_pred cCHHHHHHHHHHHHhHhhc
Confidence 4677888888888777643
No 11
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.42 E-value=1.2e-11 Score=102.41 Aligned_cols=185 Identities=25% Similarity=0.327 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 29 IERERQGLQTQEKKLISEIKKSAKQ--GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGV 106 (223)
Q Consensus 29 Ldr~~~~le~~ekkl~~~iK~a~k~--g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~ 106 (223)
+++++.++-.+.+...+......++ ......+++++.+++.++++.+|...+++|.++...+.....+..+++.|..+
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a 84 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKA 84 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 5555666666655555555544432 25677888889999888888888888888887777777666666665555555
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHHHHHhHhHH---HHHhhhhcccC--CCCCcHHHHHHHHHHHHHHhcchhhhhhc
Q 043389 107 TKAMGQMNRQMN-LPSLQKIMQEFERQNEKMEMVT---EVMGDAIDDAL--EGDDEEEETEELVNQVLDEIGIDINQELV 180 (223)
Q Consensus 107 ~~~mk~~n~~m~-~~kv~~~M~ef~~e~~~~~~~~---e~m~~~l~~~~--d~~~~eee~d~l~~qvldE~~~~~~~~l~ 180 (223)
+. .|+ ++.|.++|+.|..++..++... +.|.+.++... +..++.+++|++++.|++|+|+++.....
T Consensus 85 ~~-------~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~ 157 (204)
T COG5491 85 AM-------YMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ 157 (204)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence 44 455 6778888888888888777777 56655444444 34468889999999999999999986555
Q ss_pred cCCCCCCC---ccccchhhhhhhccCC-CCCCcHHHHHHHHHHhhc
Q 043389 181 NAPSSTVA---APAVKGKVAQAEATGN-DDGGIDSDLQARLDNLRR 222 (223)
Q Consensus 181 ~~P~~~~~---~~~~~~~~~~~~~~~~-~~~~~~d~l~~RL~~Lr~ 222 (223)
++|...+. .|+..+ +++..... .....++.|..||..|+.
T Consensus 158 ~~~~~~~~~~~~~a~~~--~ea~~ileea~~~aE~~l~e~~~~L~~ 201 (204)
T COG5491 158 SLPANVVENGSVPAAVS--PEARKILEEAEKIAEDRLQERLRELPA 201 (204)
T ss_pred cchhhhhcccccccccC--hhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence 55542111 111000 01110000 012458999999999985
No 12
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=6.3e-11 Score=106.64 Aligned_cols=158 Identities=11% Similarity=0.147 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 13 ELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT 92 (223)
Q Consensus 13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~ 92 (223)
-.+.-....|..+.-.|.|++..|+.+-++...+++.+.+.|....|..|++.-.+.-|-..++.....+|.+|-.+|.+
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~ 308 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDN 308 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34455667899999999999999999999999999999999998888888777777777788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHh
Q 043389 93 LKSTQAMGEAMKGVTKAMGQMNR-QMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEI 171 (223)
Q Consensus 93 a~~~~~~~~am~~~~~~mk~~n~-~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~ 171 (223)
+.++.-|..|++.++.+||.++. ...+++|..+|+++.+-++...+++++|+.+.-+..| ..+++++.+++.+..+.
T Consensus 309 s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d--~~de~lEkEL~~L~~D~ 386 (439)
T KOG2911|consen 309 SQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNID--FEDEDLEKELEDLEADE 386 (439)
T ss_pred hcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCc--cchHHHHHHHHHHHhcc
Confidence 99999999999999999999998 6789999999999999999999999999998766543 24566777766666554
Q ss_pred c
Q 043389 172 G 172 (223)
Q Consensus 172 ~ 172 (223)
.
T Consensus 387 ~ 387 (439)
T KOG2911|consen 387 K 387 (439)
T ss_pred c
Confidence 3
No 13
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=98.45 E-value=1.4e-05 Score=66.46 Aligned_cols=132 Identities=26% Similarity=0.304 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 36 LQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE--KFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113 (223)
Q Consensus 36 le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~--~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~ 113 (223)
+++..++.....|...++|.....++-.+.-+++|.... ++....++|+.+..+|++...+....-+|..++..
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~---- 80 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGD---- 80 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 677788888888888888877766665566666776666 77899999999999999988877766666654433
Q ss_pred HhcCChhHHHHHHHHHHH------HHHHhHhHHHHHh---hhhcccCCCCC--cHHHHHHHHHHHHHHhcchhh
Q 043389 114 NRQMNLPSLQKIMQEFER------QNEKMEMVTEVMG---DAIDDALEGDD--EEEETEELVNQVLDEIGIDIN 176 (223)
Q Consensus 114 n~~m~~~kv~~~M~ef~~------e~~~~~~~~e~m~---~~l~~~~d~~~--~eee~d~l~~qvldE~~~~~~ 176 (223)
+ ..-..+|+++.. .++.+...=|.+- +++....+... +..+.++.++..+..+.-+++
T Consensus 81 ---~--~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~ 149 (204)
T COG5491 81 ---M--AKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIG 149 (204)
T ss_pred ---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhh
Confidence 3 445555554443 3333333333333 34433343333 233444444555544433333
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=98.38 E-value=0.00027 Score=59.40 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=108.6
Q ss_pred CCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 043389 7 KRKTPAELLRE---NKRMLDKSIREIERERQGLQTQEKKL--------ISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEK 75 (223)
Q Consensus 7 ~~~~p~e~~r~---~~~~lr~~~r~Ldr~~~~le~~ekkl--------~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~ 75 (223)
+++++.+.+.. -...|.+.+..|+++..++.+.-++. +..++.++++. |.|=+++-+.-.+..+
T Consensus 12 p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~K-----K~~E~ql~~l~~q~~n 86 (211)
T PTZ00464 12 PKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQK-----RMYQNQQDMMMQQQFN 86 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 55777666554 44557777778888877776555433 55556666544 5566667788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHhHhHHHHHh--hhhcccCC
Q 043389 76 FYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFE-RQNEKMEMVTEVMG--DAIDDALE 152 (223)
Q Consensus 76 l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~-~e~~~~~~~~e~m~--~~l~~~~d 152 (223)
|......++.+........++..-+.+|+...+-| ..=+++.+..-|.+.. .+-+..++++.-+. +.++
T Consensus 87 leq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i----~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~D---- 158 (211)
T PTZ00464 87 MDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL----NVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDID---- 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC----
Confidence 99999999999999999999999999999966655 2344566654444444 44444467766553 3333
Q ss_pred CCCcHHHHHHHHHHHHHHhc---chhhhhhccCCC
Q 043389 153 GDDEEEETEELVNQVLDEIG---IDINQELVNAPS 184 (223)
Q Consensus 153 ~~~~eee~d~l~~qvldE~~---~~~~~~l~~~P~ 184 (223)
+++.++|++++...+..|.. ++-...+|+.+.
T Consensus 159 EdELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~ 193 (211)
T PTZ00464 159 EDEMLGELDALDFDMEKEADASYLADALAVPGTKL 193 (211)
T ss_pred HHHHHHHHHHHHHHHhccccchhhhccccCCCCCC
Confidence 35688889988887654433 333334555433
No 15
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=98.37 E-value=9.3e-05 Score=61.14 Aligned_cols=143 Identities=11% Similarity=0.098 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 21 MLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAK-----DLIRTRHQIEKFYKLKSQLQGVSLRIQTLKS 95 (223)
Q Consensus 21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak-----~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~ 95 (223)
....+|-.|...+..|++.++.+..+|.+... .||.+++ .+++.=+....|.....++++....|+.+..
T Consensus 24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~-----~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~ 98 (191)
T PTZ00446 24 EIYKAILKNREAIDALEKKQVQVEKKIKQLEI-----EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999977653 2333221 1222223344555667777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHH--HHHH---HHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 043389 96 TQAMGEAMKGVTKAMGQMNRQMNLPSLQKIM--QEFE---RQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDE 170 (223)
Q Consensus 96 ~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M--~ef~---~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE 170 (223)
+.+.+..=..+..+|+..++.+ .++.+-| ++++ .++...-..++=|+++++....++.+++|++++++.+..|
T Consensus 99 ~iE~a~~~~ev~~aLk~g~~aL--K~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e 176 (191)
T PTZ00446 99 NLENMHLHKIAVNALSYAANTH--KKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 8777777777888999998887 5555433 3333 3444444445566778886644567999999999988775
No 16
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00045 Score=57.15 Aligned_cols=167 Identities=18% Similarity=0.222 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 043389 11 PAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKS---QLQGVS 87 (223)
Q Consensus 11 p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~---~L~~v~ 87 (223)
|..-+++..+.+++-+|+=-|++.+.=+.-+.++.++++++|..-..+=+. -.|-....+.+..- +|-.-.
T Consensus 8 ~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~------t~~iLAKEiv~srk~v~Rly~sK 81 (227)
T KOG3229|consen 8 PGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKD------TCRILAKEIVQSRKAVKRLYESK 81 (227)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHHhH
Confidence 566788888999999999888888888888999999999998544333332 23333334444333 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH------H---HHHHHhHhHHHHHhhhhcccCCCCCcHH
Q 043389 88 LRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEF------E---RQNEKMEMVTEVMGDAIDDALEGDDEEE 158 (223)
Q Consensus 88 ~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef------~---~e~~~~~~~~e~m~~~l~~~~d~~~~ee 158 (223)
.+|.+.. -.|+..-..+.-.+.+-+-..|-+.|+.+ . .++.+-=+...+|.+.++..++..++.+
T Consensus 82 AqlnSv~------M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~e 155 (227)
T KOG3229|consen 82 AQLNSVS------MQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSE 155 (227)
T ss_pred HHHhhHH------HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 4444422 23333333333333333333333333332 2 2233333455778888899999888888
Q ss_pred HHHHHHHHHHHHhcchhhh-hhccCCCCCCCc
Q 043389 159 ETEELVNQVLDEIGIDINQ-ELVNAPSSTVAA 189 (223)
Q Consensus 159 e~d~l~~qvldE~~~~~~~-~l~~~P~~~~~~ 189 (223)
|.++.++.-.+.+...+.+ .++.+|.+.-..
T Consensus 156 emeEe~deEVdkIL~~it~~~~~~~p~a~~~~ 187 (227)
T KOG3229|consen 156 EMEEEADEEVDKILTEITGEKAGEAPLAVTAT 187 (227)
T ss_pred hHHHHHHHHHHHHHHHHhccccccCCcchHHH
Confidence 9999999999999877753 466666554433
No 17
>PRK10698 phage shock protein PspA; Provisional
Probab=98.07 E-value=0.00097 Score=56.51 Aligned_cols=131 Identities=11% Similarity=0.250 Sum_probs=97.3
Q ss_pred CCCChHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH-------HHHH
Q 043389 7 KRKTPAELLRENKRMLDKS--------------IREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKV-------MAKD 65 (223)
Q Consensus 7 ~~~~p~e~~r~~~~~lr~~--------------~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari-------~Ak~ 65 (223)
+-.+|...++...++|+.. .+.++|++..++....+...++..|+.+|+-+-||. |+..
T Consensus 21 kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~ 100 (222)
T PRK10698 21 KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDL 100 (222)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3468876666666555543 467888888888889999999999999999998887 6666
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhH
Q 043389 66 LIRTRHQIE----KFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKME 137 (223)
Q Consensus 66 ~vr~rk~~~----~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~ 137 (223)
+-..+.++. .+..+..++..+...|..+.+-..+..+=..++.+..++|..+.--.....|..|++--++.+
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~ 176 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRID 176 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 666666554 334667777778888888888888888888888888888888766666666666655444443
No 18
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.69 E-value=0.01 Score=49.80 Aligned_cols=138 Identities=20% Similarity=0.299 Sum_probs=88.3
Q ss_pred CCChHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 043389 8 RKTPAELLRENKRMLDKSI--------------REIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQI 73 (223)
Q Consensus 8 ~~~p~e~~r~~~~~lr~~~--------------r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~ 73 (223)
-.+|...++..++++...+ +.+++++..++....+...++..|+++|+-+.|+.++..........
T Consensus 21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~ 100 (221)
T PF04012_consen 21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA 100 (221)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3678766666655554443 66777788888888888889999999999999988766666655543
Q ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHhHhH
Q 043389 74 E-----------KFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM---NLPSLQKIMQEFERQNEKMEMV 139 (223)
Q Consensus 74 ~-----------~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m---~~~kv~~~M~ef~~e~~~~~~~ 139 (223)
. .+..++.++..+..+|..+..-..+..+-..++.+-..+|..+ ++......++.++...+.+.-.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~ 180 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEAR 180 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHH
Confidence 2 3334445555566667777777777777666666666666544 4444444444444444444444
Q ss_pred HHHHhh
Q 043389 140 TEVMGD 145 (223)
Q Consensus 140 ~e~m~~ 145 (223)
.+.+.+
T Consensus 181 a~a~~e 186 (221)
T PF04012_consen 181 AEASAE 186 (221)
T ss_pred HHHHHH
Confidence 444444
No 19
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.68 E-value=0.0086 Score=50.53 Aligned_cols=129 Identities=14% Similarity=0.246 Sum_probs=81.5
Q ss_pred CCCChHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-----
Q 043389 7 KRKTPAELLRENKRMLDKSI--------------REIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLI----- 67 (223)
Q Consensus 7 ~~~~p~e~~r~~~~~lr~~~--------------r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~v----- 67 (223)
+-.+|...++...++++..+ +.+++++..++....+...+++.|+++|+-+-||-.+..-.
T Consensus 21 k~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~ 100 (219)
T TIGR02977 21 KAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQEL 100 (219)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 44688767776666665444 56778888888888888889999999999887765432211
Q ss_pred --HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 043389 68 --RTRHQI----EKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 135 (223)
Q Consensus 68 --r~rk~~----~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~ 135 (223)
+...++ ..+..+..+|..+..+|+.+.+...+..+=..++.+...+|..+.--.+...+..|++-.++
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 111111 23345555666666667777777776666566677766776665444445555565554444
No 20
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.019 Score=47.59 Aligned_cols=159 Identities=17% Similarity=0.299 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 23 DKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKD----LIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQA 98 (223)
Q Consensus 23 r~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~----~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~ 98 (223)
..+|..|.--..-|++++.-++.+|-..+..+ |+.|..- ++..=+...+|.+.-++++++...|+.+..+.+
T Consensus 20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~----A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE 95 (221)
T KOG1656|consen 20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVENN----ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34677777777788888888888888776642 4554433 333444456777888899999999998888777
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHH--HHHHHHHH---HhHhHHHHHhhhhcccCC--CCCcHHHHHHHHHHHHHHh
Q 043389 99 MGEAMKGVTKAMGQMNRQMNLPSLQKIM--QEFERQNE---KMEMVTEVMGDAIDDALE--GDDEEEETEELVNQVLDEI 171 (223)
Q Consensus 99 ~~~am~~~~~~mk~~n~~m~~~kv~~~M--~ef~~e~~---~~~~~~e~m~~~l~~~~d--~~~~eee~d~l~~qvldE~ 171 (223)
-++.=-.+-.+|+..-+.| ..++..| |+..+-|+ ....+.+=|+++++.-+. .+.+++|+..+++.+-+|.
T Consensus 96 nA~~n~Evl~~m~~~A~Am--K~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee 173 (221)
T KOG1656|consen 96 NANTNTEVLDAMGSAAKAM--KAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE 173 (221)
T ss_pred cccccHHHHHHHHHHHHHH--HHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence 7666666777788888777 4444333 34444444 444455667788988886 3468999999999888876
Q ss_pred cchhhhhhccCCCCCCCcc
Q 043389 172 GIDINQELVNAPSSTVAAP 190 (223)
Q Consensus 172 ~~~~~~~l~~~P~~~~~~~ 190 (223)
+..++-.++.+++++|
T Consensus 174 ---ld~~ll~~~~p~v~LP 189 (221)
T KOG1656|consen 174 ---LDKELLDIRAPPVPLP 189 (221)
T ss_pred ---HHHHHhccCCCCCCCC
Confidence 3344444333334333
No 21
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.45 E-value=0.00039 Score=55.66 Aligned_cols=147 Identities=20% Similarity=0.312 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 25 SIREIERERQGLQTQEKKLISEIKKS---AKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGE 101 (223)
Q Consensus 25 ~~r~Ldr~~~~le~~ekkl~~~iK~a---~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~ 101 (223)
++..|...+.+|++..+++..+|++. +++--..+-+..|+.++|.++.+.+. ..++.....+|+........+.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~---~~~~~~~~~~l~~~~~~ie~a~ 78 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQ---LEKLLNQLSNLESVLLQIETAQ 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999854 33444556678888888877765443 4566677778888888888888
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHH--HHHHHHHHhHhHHH---HHhhhhcccCCCCCcHHHHHHHHHHHHHHhcchhh
Q 043389 102 AMKGVTKAMGQMNRQMNLPSLQKIMQ--EFERQNEKMEMVTE---VMGDAIDDALEGDDEEEETEELVNQVLDEIGIDIN 176 (223)
Q Consensus 102 am~~~~~~mk~~n~~m~~~kv~~~M~--ef~~e~~~~~~~~e---~m~~~l~~~~d~~~~eee~d~l~~qvldE~~~~~~ 176 (223)
....+..+|+..++.| .++...|+ ++..-++.+....+ .++++|++.+ +.....-|++++..|+++.-+..
T Consensus 79 ~~~~v~~al~~~~~~L--k~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~--~~~~~~dd~ele~eL~~l~~e~~ 154 (171)
T PF03357_consen 79 SNQQVVKALKQSSKAL--KKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSM--DQVDDVDDEELEEELEQLEDEIE 154 (171)
T ss_dssp HHHHHSSS----SHHH--HHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCHHHHHHHHHHHHHHHh
Confidence 8899888999888876 45555544 44444444433222 3333443321 11156677788888888866554
Q ss_pred hh
Q 043389 177 QE 178 (223)
Q Consensus 177 ~~ 178 (223)
..
T Consensus 155 ~~ 156 (171)
T PF03357_consen 155 EE 156 (171)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 22
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.015 Score=47.90 Aligned_cols=162 Identities=12% Similarity=0.240 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 12 AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKS---AKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSL 88 (223)
Q Consensus 12 ~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a---~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ 88 (223)
+-.+..+.|.|.+....|+-+-++|=.+.|+.-.+=... +-..+.-..|.|.+.+...| .++.....++.++.+
T Consensus 18 qRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~k---aqiqaVSl~iQtlks 94 (224)
T KOG3230|consen 18 QRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMK---AQIQAVSLRIQTLKS 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 345556777788888888888887777776654422111 11234444566655555444 456666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH-HhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHH
Q 043389 89 RIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE-KMEMVTEVMGDAIDDALEGDDEEEETEELVNQV 167 (223)
Q Consensus 89 ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~-~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qv 167 (223)
.-.-+.++.-++++|...++-|. .-.+.+|-.-...-.+.|+ ..+++++.|+|+|+..-|+++-++=+...++.|
T Consensus 95 s~sma~aMkGaTkam~~MNrqmn----lpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEi 170 (224)
T KOG3230|consen 95 STSMAQAMKGATKAMAGMNRQMN----LPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEI 170 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 77788888888888887665542 2223333333333333333 346788999999987777777777788888888
Q ss_pred HHHhcchhhhhhcc
Q 043389 168 LDEIGIDINQELVN 181 (223)
Q Consensus 168 ldE~~~~~~~~l~~ 181 (223)
-=.++-++++ +|+
T Consensus 171 Gvdl~~qL~~-~P~ 183 (224)
T KOG3230|consen 171 GVDLASQLSS-LPS 183 (224)
T ss_pred cccHHHHhcc-Ccc
Confidence 7777665544 444
No 23
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.055 Score=43.55 Aligned_cols=155 Identities=16% Similarity=0.264 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 13 ELLRENKRMLDKSIREIERERQGLQTQEKKLIS---------EIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQL 83 (223)
Q Consensus 13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~---------~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L 83 (223)
-.+|...|.|-+.-|.++++-++|+.+.++.-. .+|+.+.-.+ ...|.||- ..++..+..|=
T Consensus 18 ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRk-QKtrt~a~--------s~ki~s~~~Qn 88 (208)
T KOG3231|consen 18 RELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRK-QKTRTFAV--------SSKITSMSTQN 88 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH-hhhhhhhh--------hhhhhhhHHHH
Confidence 356778888888889999999999888887643 2222221111 11122221 12333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHH
Q 043389 84 QGVSLRIQTLKSTQAMGEAMKGVTKAMG--QMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETE 161 (223)
Q Consensus 84 ~~v~~ql~~a~~~~~~~~am~~~~~~mk--~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d 161 (223)
-.+.+++..+.++-.+++.|+..++.|. ++...| -.++..-.. .+ ..-++|++.+++.|+..-|+++.++-|.
T Consensus 89 K~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tm--r~FQ~anmK--Me-mTeEMiNDTLDdild~sgDeeEs~aiVN 163 (208)
T KOG3231|consen 89 KVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTM--RNFQKANMK--ME-MTEEMINDTLDDILDGSGDEEESQAIVN 163 (208)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHH--HHHHHHHHH--hh-hHHHHHHhhHHHHhcCCCcHHHHHHHHH
Confidence 4455566666666666667776666653 222222 333322111 11 1236788999999998888888889999
Q ss_pred HHHHHHHHHhcchhhhhhccC
Q 043389 162 ELVNQVLDEIGIDINQELVNA 182 (223)
Q Consensus 162 ~l~~qvldE~~~~~~~~l~~~ 182 (223)
..++.|-=|+...+.. .|++
T Consensus 164 qVLDEIGIEisgKma~-~P~a 183 (208)
T KOG3231|consen 164 QVLDEIGIEISGKMAK-APSA 183 (208)
T ss_pred HHHHHhhhhhcchhcc-CCcc
Confidence 9999999999887754 6654
No 24
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.37 E-value=0.53 Score=40.02 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=78.2
Q ss_pred CCChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 043389 8 RKTPAELLRENKRMLDK--------------SIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQI 73 (223)
Q Consensus 8 ~~~p~e~~r~~~~~lr~--------------~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~ 73 (223)
-.+|+..+...++++.. ..+.++++..++.....+++.+++.|+.+|+..-|+-.+...-..-+..
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~ 101 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA 101 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 36787666655555433 3478888999999999999999999999999776665433332222211
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCChhHHHHHHHHHHHHHHHhHhH
Q 043389 74 -----------EKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMG---QMNRQMNLPSLQKIMQEFERQNEKMEMV 139 (223)
Q Consensus 74 -----------~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk---~~n~~m~~~kv~~~M~ef~~e~~~~~~~ 139 (223)
.....++.++..+..+|.....-..+..+=..++++-. .+...++. ...|..|++.-++.+..
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kiee~ 178 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIEER 178 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHHHH
Confidence 23344555555566665555555555555444444444 44444555 56666666555444433
Q ss_pred H
Q 043389 140 T 140 (223)
Q Consensus 140 ~ 140 (223)
+
T Consensus 179 e 179 (225)
T COG1842 179 E 179 (225)
T ss_pred H
Confidence 3
No 25
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=93.78 E-value=0.81 Score=36.95 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 19 KRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQA 98 (223)
Q Consensus 19 ~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~ 98 (223)
+..|+.++..|.-...+.....+....+|-..++.|+.+.|++-+..+++-.+...=|.-+..-.+-+..++........
T Consensus 1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~ 80 (165)
T PF03398_consen 1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKE 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 34688888888888889999999999999999999999999999999999999988777777777777766665444433
Q ss_pred HHHHHHHHHHHHHHHHhc-CChhHHHHHHHHH----HHHHHHh------HhHHHHHhhhhcccCCCCCcHHHHHHHHHHH
Q 043389 99 MGEAMKGVTKAMGQMNRQ-MNLPSLQKIMQEF----ERQNEKM------EMVTEVMGDAIDDALEGDDEEEETEELVNQV 167 (223)
Q Consensus 99 ~~~am~~~~~~mk~~n~~-m~~~kv~~~M~ef----~~e~~~~------~~~~e~m~~~l~~~~d~~~~eee~d~l~~qv 167 (223)
.-..++.+...+=-...- -+++.+..+-.-| .+++... +.++..+-.-++... -.++.++..+..|
T Consensus 81 ~p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~---p~~~~v~~~L~eI 157 (165)
T PF03398_consen 81 CPPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKP---PSEELVEKYLKEI 157 (165)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S------CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCC---cCHHHHHHHHHHH
Confidence 333344333333333333 4667666554433 3444222 111222212222111 1234677777777
Q ss_pred HHHhcch
Q 043389 168 LDEIGID 174 (223)
Q Consensus 168 ldE~~~~ 174 (223)
+.|+|++
T Consensus 158 A~e~~i~ 164 (165)
T PF03398_consen 158 AKEYGIP 164 (165)
T ss_dssp HHHCT-S
T ss_pred HHHcCCC
Confidence 7777764
No 26
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.82 E-value=4.9 Score=33.39 Aligned_cols=147 Identities=15% Similarity=0.267 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 22 LDKSIREIERERQGLQTQEKKLISEIKKS---AKQGQMGAVKV-MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQ 97 (223)
Q Consensus 22 lr~~~r~Ldr~~~~le~~ekkl~~~iK~a---~k~g~~~~ari-~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~ 97 (223)
|.-.+..+++-...++.+..+|..++.+. +++=...-++. +=+.++|.=|+...|...+-+|.+-.+.++.++-+.
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 56677778888888888888888776644 44444444443 334466666777888888888888888888877766
Q ss_pred HHHHHHHHHHHHHHHHHhcCChh----HHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhc
Q 043389 98 AMGEAMKGVTKAMGQMNRQMNLP----SLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIG 172 (223)
Q Consensus 98 ~~~~am~~~~~~mk~~n~~m~~~----kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~ 172 (223)
+-.+--.....+|+..|+.|.-. .|+ -+++++.+|+.+=....=|.++|+... ..++-..+ .++.-|+-++
T Consensus 97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId-~IedlQDem~Dlmd~a~EiQE~Lgr~y--~~peide~-dL~aELdaL~ 171 (218)
T KOG1655|consen 97 ESLKDTQATVAAMKDTNKEMKKQYKKVNID-KIEDLQDEMEDLMDQADEIQEVLGRNY--NTPDIDEA-DLDAELDALG 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcCHH-HHHHHHHHHH
Confidence 66555556667888888877332 222 345666666665444444566666543 55663333 3344444443
No 27
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.74 E-value=2.1 Score=31.12 Aligned_cols=50 Identities=10% Similarity=0.304 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389 68 RTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM 117 (223)
Q Consensus 68 r~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m 117 (223)
.+++...+|.+...|+.+|..-|+.-.-...+...+..+..++..+...+
T Consensus 7 ~kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~v 56 (89)
T COG1937 7 EKKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMREV 56 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999998888888888888888887776544
No 28
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=88.74 E-value=13 Score=30.91 Aligned_cols=95 Identities=22% Similarity=0.360 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-H-------HHHH-HHHHHHHHHHHHHH
Q 043389 21 MLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQ-I-------EKFY-KLKSQLQGVSLRIQ 91 (223)
Q Consensus 21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~-~-------~~l~-~~~~~L~~v~~ql~ 91 (223)
+-.++|-.|.++..+|-+..+++.+.+- .=|.+|+.+||...- . .+|+ .+-.|-+.--..|+
T Consensus 13 d~DrAIL~lK~QRdkl~qyqkR~e~~le---------~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlE 83 (209)
T KOG2910|consen 13 DQDRAILSLKTQRDKLKQYQKRLEKQLE---------AERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLE 83 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888777653 346788888884332 1 2332 34444444445577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 043389 92 TLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIM 126 (223)
Q Consensus 92 ~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M 126 (223)
.+.+..+.+..=+.+..+++.-|..+ .+++..|
T Consensus 84 qmvsdiEft~vqk~V~~gLk~GN~~l--kkl~~~~ 116 (209)
T KOG2910|consen 84 QMVSDIEFTQVQKKVMEGLKQGNEAL--KKLQQEF 116 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 88888888888889999999999877 5666554
No 29
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=88.36 E-value=5.4 Score=28.48 Aligned_cols=77 Identities=16% Similarity=0.402 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhc
Q 043389 69 TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAID 148 (223)
Q Consensus 69 ~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~ 148 (223)
+++-..+|.+...|+.+|..-++.-....++...+..+-.+|..+...+ +.+.+...+.
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~v---------------------l~~hl~~c~~ 62 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKLV---------------------LEDHLEHCLV 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Confidence 3455678999999999999999988888888888888888888777554 4445555554
Q ss_pred ccCCC-CCcHHHHHHHHHH
Q 043389 149 DALEG-DDEEEETEELVNQ 166 (223)
Q Consensus 149 ~~~d~-~~~eee~d~l~~q 166 (223)
....+ .+.++.+++++.-
T Consensus 63 ~~~~~~~~~~~~i~el~~~ 81 (85)
T PF02583_consen 63 EAIQDEEDREEAIEELIKL 81 (85)
T ss_dssp CHCCTCCCHHHHHHHHHHH
T ss_pred hHhcCcccHHHHHHHHHHH
Confidence 44333 3455666665543
No 30
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=87.52 E-value=5.7 Score=28.88 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389 69 TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM 117 (223)
Q Consensus 69 ~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m 117 (223)
+++...+|.+..+|+.+|..-++.-.....+...+..+-.++..+...+
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~v 56 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREV 56 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556779999999999999999887777788888887777777665544
No 31
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=85.28 E-value=6 Score=35.64 Aligned_cols=65 Identities=32% Similarity=0.566 Sum_probs=32.8
Q ss_pred CccccCCC-CChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHH
Q 043389 1 MSFLFGKR-KTPAELLRENKRMLDKSIREI----ERERQGLQTQEKKLISEIKKSAKQG-----QMGAVKVMAKDLIRT 69 (223)
Q Consensus 1 ~~~~Fg~~-~~p~e~~r~~~~~lr~~~r~L----dr~~~~le~~ekkl~~~iK~a~k~g-----~~~~ari~Ak~~vr~ 69 (223)
|++|||++ ++|.|.+|. ++.....| ++...+...+-.+.-.+||.-+-.. +.+.+..+|.++.+.
T Consensus 1 M~FlF~k~~KtP~ElVr~----l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~ 75 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRS----LREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS 75 (335)
T ss_dssp -----------HHHHHHH----HHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHH----HHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 78999975 789998884 66666666 3445555555555555666655522 234456777887764
No 32
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.14 E-value=28 Score=32.40 Aligned_cols=150 Identities=20% Similarity=0.201 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 043389 19 KRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQ---MGAVKVMAKDLIRTRHQIE-KFYKLKSQLQGVSLRIQTLK 94 (223)
Q Consensus 19 ~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~---~~~ari~Ak~~vr~rk~~~-~l~~~~~~L~~v~~ql~~a~ 94 (223)
...+.-.+-.|-+-..+|.++-..+..+|+++-.+-. .++-|..|...+|.|+-.+ .+.+..+.++.++ +..
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~----~vl 303 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLE----TVL 303 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHH
Confidence 3467788889999999999999999999998765443 2455678888888887654 5556666655554 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHh------hhhcccCCCCCcHHHHHHHHHHHH
Q 043389 95 STQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMG------DAIDDALEGDDEEEETEELVNQVL 168 (223)
Q Consensus 95 ~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~------~~l~~~~d~~~~eee~d~l~~qvl 168 (223)
++...+..=+-+-.+++.-+..++.-.. .+-..++--+.++.+.+.++ ++|.+.. ....+.-|+.+++-|
T Consensus 304 ~~Id~s~~nkvvl~AyksGs~alK~il~--~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~--~~~~d~~de~lEkEL 379 (439)
T KOG2911|consen 304 SQIDNSQTNKVVLQAYKSGSEALKAILA--QGGSTEKVEDVLDEVNETLDRQEEVEDALASYN--VNNIDFEDEDLEKEL 379 (439)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHHHh--ccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCC--CCCCccchHHHHHHH
Confidence 4444444456666778888777644333 23344444445555555554 4454432 234477888999999
Q ss_pred HHhcchhh
Q 043389 169 DEIGIDIN 176 (223)
Q Consensus 169 dE~~~~~~ 176 (223)
+++..|..
T Consensus 380 ~~L~~D~~ 387 (439)
T KOG2911|consen 380 EDLEADEK 387 (439)
T ss_pred HHHHhccc
Confidence 99876654
No 33
>PRK11352 regulator protein FrmR; Provisional
Probab=83.88 E-value=11 Score=27.46 Aligned_cols=49 Identities=8% Similarity=0.220 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389 69 TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM 117 (223)
Q Consensus 69 ~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m 117 (223)
+++...+|.+...|+.+|..-|+.-.....+...+..+..++..+...+
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~~i 56 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAEV 56 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556679999999999999999988888888888888888877665444
No 34
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=80.00 E-value=44 Score=29.88 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=25.5
Q ss_pred CccccCCCCChH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 1 MSFLFGKRKTPA-----------ELLRENKRMLDKSIREIERERQGLQTQEKKLIS 45 (223)
Q Consensus 1 ~~~~Fg~~~~p~-----------e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~ 45 (223)
|++|||+-++|. .++......|......|.+.+..|+....+...
T Consensus 75 l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~ 130 (333)
T PF05816_consen 75 LGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWE 130 (333)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888644443 444445555666666666666666655555444
No 35
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.13 E-value=34 Score=28.02 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 043389 28 EIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRT-RHQIEKFY--------KLKSQLQGVSLRIQTLKSTQA 98 (223)
Q Consensus 28 ~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~-rk~~~~l~--------~~~~~L~~v~~ql~~a~~~~~ 98 (223)
.|++.+..|..-.|.|....++|-|.-..+.+++ +.+|.+ ...+.++| +-.-++--+..++....+-.+
T Consensus 6 ~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~--kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvq 83 (203)
T KOG3232|consen 6 KLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKL--KKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQ 83 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554433343332 333333 11122221 111122223444555444444
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 043389 99 MGEAMKGVTKAMGQMNRQM 117 (223)
Q Consensus 99 ~~~am~~~~~~mk~~n~~m 117 (223)
+.-.|+.+++-|..+-+.|
T Consensus 84 Tavtmr~Vt~sM~gVvK~m 102 (203)
T KOG3232|consen 84 TAVTMRKVTKSMAGVVKSM 102 (203)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444
No 36
>PRK09720 cybC cytochrome b562; Provisional
Probab=75.16 E-value=23 Score=26.30 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=26.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 043389 46 EIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFY 77 (223)
Q Consensus 46 ~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~ 77 (223)
.+...+..|+.+.|+..|+++...|+.+-+-+
T Consensus 68 ~A~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 68 DALKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567889999999999999999999876543
No 37
>PRK15058 cytochrome b562; Provisional
Probab=71.55 E-value=30 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=26.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Q 043389 46 EIKKSAKQGQMGAVKVMAKDLIRTRHQIEKF 76 (223)
Q Consensus 46 ~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l 76 (223)
++...+..|+.+.|+..++++...|+++-+-
T Consensus 96 ~a~~la~~GkL~eAK~~a~~l~~lR~eYHkk 126 (128)
T PRK15058 96 GALKLANEGKVKEAQAAAEQLKTTRNAYHKK 126 (128)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788999999999999999999987643
No 38
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=52.60 E-value=1.2e+02 Score=24.25 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=7.9
Q ss_pred cCChhHHHHHHHHHHHH
Q 043389 116 QMNLPSLQKIMQEFERQ 132 (223)
Q Consensus 116 ~m~~~kv~~~M~ef~~e 132 (223)
.++...-.+++++|-.+
T Consensus 154 ~l~~~~~~~li~~~i~~ 170 (174)
T PRK07352 154 RLDEDAQQRLIDRSIAN 170 (174)
T ss_pred HcCHHHHHHHHHHHHHh
Confidence 34444444555554443
No 39
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=51.26 E-value=42 Score=21.18 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 11 PAELLRENKRMLDKSIREIERERQGLQTQEKKLIS 45 (223)
Q Consensus 11 p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~ 45 (223)
.++.+.+.--.|-..+..|+.+|..|+.+...|..
T Consensus 6 AkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 6 AKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp ---------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777888889999999888877666554
No 40
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.72 E-value=45 Score=25.33 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 043389 18 NKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQM 56 (223)
Q Consensus 18 ~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~ 56 (223)
-.--+...+..|+++...+++.-+.+...++.++..+..
T Consensus 79 r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 79 RKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334466677777777777777777777778787777654
No 41
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.95 E-value=2.2e+02 Score=26.36 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 18 NKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQG-QMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT 92 (223)
Q Consensus 18 ~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g-~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~ 92 (223)
....+...-|++..++..|..+.+.+.++|++..+.+ +.+..+ .+.+....++..+..++..++.++..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~------~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALI------AEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999998866655 322222 12233334455555555555555443
No 42
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=48.03 E-value=1.2e+02 Score=23.51 Aligned_cols=30 Identities=37% Similarity=0.556 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 19 KRMLDKSIREIERERQGLQTQEKKLISEIK 48 (223)
Q Consensus 19 ~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK 48 (223)
...+..++..+|++...|+.+.++...+++
T Consensus 22 ~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 22 LQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888899999999999998888776654
No 43
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=44.16 E-value=2.6e+02 Score=25.80 Aligned_cols=138 Identities=16% Similarity=0.240 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 043389 34 QGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTK-AMGQ 112 (223)
Q Consensus 34 ~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~-~mk~ 112 (223)
++=+...+++..+|-..++.|....|++-+..+||-.+...-|.-+-.=.+-|-.++.....+...-..++.+.. +|=.
T Consensus 11 nKk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifA 90 (388)
T KOG2027|consen 11 NKKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFA 90 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHH
Confidence 344456677888999999999999999999999999998776655555556666666655555555555554433 3333
Q ss_pred HHhcCChhHHHHHHHHHHH----HHHHhH--------hHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhcchh
Q 043389 113 MNRQMNLPSLQKIMQEFER----QNEKME--------MVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGIDI 175 (223)
Q Consensus 113 ~n~~m~~~kv~~~M~ef~~----e~~~~~--------~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~~~~ 175 (223)
.-+.-+++.+..+-+-|-. ++...- +...+|.. |... .-..+-+..++-.|+.|+++.+
T Consensus 91 A~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiek-Ls~~---~P~~e~k~k~lkEIA~ey~v~~ 161 (388)
T KOG2027|consen 91 APRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEK-LSVE---APPKELKEKYLKEIAKEYNVNW 161 (388)
T ss_pred hccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHH-hcCC---CCcHHHHHHHHHHHHHHhCCCc
Confidence 3444568888877666654 222221 11112222 1111 1133445778888888888744
No 44
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=42.51 E-value=1.6e+02 Score=22.82 Aligned_cols=76 Identities=12% Similarity=0.255 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 34 QGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 113 (223)
Q Consensus 34 ~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~ 113 (223)
..+-.++..+-..||. =+...++++ .++...++...++...-.+++.+..+|..-+. .|......|..+
T Consensus 45 ~~Va~~Q~~L~~riKe----vd~~~~~l~-~~~~erqk~~~k~ae~L~kv~els~~L~~~~~------lL~~~v~~ie~L 113 (131)
T PF10158_consen 45 EAVAFDQNALAKRIKE----VDQEIAKLL-QQMVERQKRFAKFAEQLEKVNELSQQLSRCQS------LLNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3333344444444443 344566665 44555556666666666678887777776555 677777788888
Q ss_pred HhcCChh
Q 043389 114 NRQMNLP 120 (223)
Q Consensus 114 n~~m~~~ 120 (223)
|..+..+
T Consensus 114 N~~LP~~ 120 (131)
T PF10158_consen 114 NEILPEE 120 (131)
T ss_pred HhhCChh
Confidence 8777543
No 45
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=42.16 E-value=1.4e+02 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 043389 46 EIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFY 77 (223)
Q Consensus 46 ~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~ 77 (223)
.+...+..|+.+.|+..++.+--.|+.+-+.+
T Consensus 71 ~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 71 KAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 56678999999999999999999999876654
No 46
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=41.67 E-value=45 Score=28.46 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=20.1
Q ss_pred CccccCCCCCh--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 1 MSFLFGKRKTP--------AELLRENKRMLDKSIREIERERQGL 36 (223)
Q Consensus 1 ~~~~Fg~~~~p--------~e~~r~~~~~lr~~~r~Ldr~~~~l 36 (223)
|++|||.++.= .+.+.+|=+.+-.....|..++...
T Consensus 172 mgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e~lr~~i~~~ 215 (239)
T PF10593_consen 172 MGRWFGYRPGYEDLCRIYMPEELYDWFRHIAEAEEELREEIKEM 215 (239)
T ss_pred HhhcccCCcccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999987641 2444455445555555554444333
No 47
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=40.97 E-value=1.5e+02 Score=21.93 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=26.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 043389 46 EIKKSAKQGQMGAVKVMAKDLIRTRHQIEK 75 (223)
Q Consensus 46 ~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~ 75 (223)
++.+.+..||.+.|+.-|+.+.-.|+.+-+
T Consensus 68 ~a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 68 KADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999997753
No 48
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=40.34 E-value=2e+02 Score=23.23 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 12 AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKS 50 (223)
Q Consensus 12 ~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a 50 (223)
...+.+=+..+.......++.....+......+.++..+
T Consensus 50 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A 88 (184)
T CHL00019 50 SDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQA 88 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444334455555555444444444444444444433
No 49
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=39.20 E-value=91 Score=25.03 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=17.5
Q ss_pred cccCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 3 FLFGKR--KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIK 48 (223)
Q Consensus 3 ~~Fg~~--~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK 48 (223)
++||.| -++++.+.. .+.+-+++++|+..-+++.-+++..+++
T Consensus 81 klaGykeqittkDeie~---qmdrivkemrrQlemidkLTtREiEQVe 125 (173)
T PF01452_consen 81 KLAGYKEQITTKDEIEK---QMDRIVKEMRRQLEMIDKLTTREIEQVE 125 (173)
T ss_dssp --------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccCCcHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 578876 355555554 4555566666666666665555554443
No 50
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.06 E-value=2.3e+02 Score=24.24 Aligned_cols=103 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 28 EIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVT 107 (223)
Q Consensus 28 ~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~ 107 (223)
.|.++|++|+| +..+||..+..+++.....|..+=-..-....++...--..-+=++-=+.-.....+--.=+.-.
T Consensus 46 DLKkEIKKLQR----~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~ 121 (233)
T PF04065_consen 46 DLKKEIKKLQR----LRDQIKTWLSSNDIKDKKKLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKE 121 (233)
T ss_pred HHHHHHHHHHH----HHHHHHHHccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 043389 108 KAMGQMNRQMNLPSLQKIMQEFERQNEKM 136 (223)
Q Consensus 108 ~~mk~~n~~m~~~kv~~~M~ef~~e~~~~ 136 (223)
.+...++..+ +.+...++.|+-+++.+
T Consensus 122 e~~~wl~~~I--d~L~~QiE~~E~E~E~L 148 (233)
T PF04065_consen 122 EARDWLKDSI--DELNRQIEQLEAEIESL 148 (233)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH
No 51
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.77 E-value=2.7e+02 Score=24.36 Aligned_cols=84 Identities=12% Similarity=0.238 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------------HHHHHHHHHH
Q 043389 12 AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIR-------------TRHQIEKFYK 78 (223)
Q Consensus 12 ~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr-------------~rk~~~~l~~ 78 (223)
...++.....+...+..+.+++..+...+..+..+|++--.-=+....|..+-+.|| .++.+..|..
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~ 243 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVE 243 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888999999999999999999999999755432222233333333333 3444555544
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043389 79 LKSQLQGVSLRIQTLKS 95 (223)
Q Consensus 79 ~~~~L~~v~~ql~~a~~ 95 (223)
---.|+-++.+|+.-+.
T Consensus 244 kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 244 KFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 44466777777665443
No 52
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=36.25 E-value=2.2e+02 Score=22.70 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 18 NKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT 92 (223)
Q Consensus 18 ~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~ 92 (223)
|+.....-....++++.+|-+ .+.-+|..+++.+.++.++. -+.|....+...+..++..+..++.+
T Consensus 71 WK~eFe~Y~~~a~~Em~KLi~----yk~~aKsyAkkKD~Ea~~L~----~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 71 WKEEFESYHEKAEKEMEKLIK----YKQLAKSYAKKKDAEAMRLA----EKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444444433 45567777888887777652 44566666777777777766666543
No 53
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.92 E-value=1.7e+02 Score=21.21 Aligned_cols=68 Identities=25% Similarity=0.356 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 19 KRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQG-QMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT 92 (223)
Q Consensus 19 ~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g-~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~ 92 (223)
...+...-|.+..++..+..+.+.+..+|....+.| +.+..+. +.+.-...+..+..++..+..++..
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~------e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKA------EVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788889999999999999999999999999987 4443332 2333334455555555555555443
No 54
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=35.75 E-value=2.2e+02 Score=22.55 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 62 MAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKS 95 (223)
Q Consensus 62 ~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~ 95 (223)
.|+.++|.-+...+....+..+.++...|..-..
T Consensus 42 ~t~~~~r~~~~~r~~~~~~~~v~~~~~~i~~k~~ 75 (146)
T PF05852_consen 42 FTKKSLRSHNSLREECEIKNKVSSLETEISEKKK 75 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666667777777776666655444
No 55
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.94 E-value=1.4e+02 Score=22.85 Aligned_cols=41 Identities=32% Similarity=0.466 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 12 AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAK 52 (223)
Q Consensus 12 ~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k 52 (223)
.+.+++-.-.|...++.|+|+..+++.+-+.++..|.++..
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455566666666666666666666666665554
No 56
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=34.14 E-value=20 Score=25.61 Aligned_cols=17 Identities=41% Similarity=0.811 Sum_probs=12.0
Q ss_pred CccccCCCCChHHHHHH
Q 043389 1 MSFLFGKRKTPAELLRE 17 (223)
Q Consensus 1 ~~~~Fg~~~~p~e~~r~ 17 (223)
|++|||+++++.+..++
T Consensus 4 ~~~f~~~k~~Sa~vAKe 20 (84)
T PRK13989 4 LSFLLGEKKKTASVAKE 20 (84)
T ss_pred HHHhhcCCCCcHHHHHH
Confidence 46788887777666665
No 57
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.07 E-value=4.2e+02 Score=25.19 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 17 ENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAK 52 (223)
Q Consensus 17 ~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k 52 (223)
+..+.|=-+.|++++++..+.++-+.++.+-...-+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666666665554433
No 58
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.37 E-value=2e+02 Score=21.20 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHh
Q 043389 68 RTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMG 144 (223)
Q Consensus 68 r~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~ 144 (223)
+......++..+..++..+..++.......+....+...+++.+.+...+=...+..+..++.+..+.++..-..+.
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777778888888888888888888888888899999998877556677777777777766644444333
No 59
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.49 E-value=83 Score=20.72 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043389 20 RMLDKSIREIERERQGLQTQEKK 42 (223)
Q Consensus 20 ~~lr~~~r~Ldr~~~~le~~ekk 42 (223)
..+|.+.+.+.+++++++++-.+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777766544
No 60
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.32 E-value=4.3e+02 Score=24.46 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 17 ENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT 92 (223)
Q Consensus 17 ~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~ 92 (223)
+....+...-|++..++..|..+.+.+-++|+...+.++.....+ ..+.+.-..++..+..++..++.++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l----~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEI----KKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888999999999999999988655553211111 123333344555555555555555443
No 61
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=31.27 E-value=92 Score=23.81 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=22.1
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 3 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQ 39 (223)
Q Consensus 3 ~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ 39 (223)
++|....+|+..++ +++...+.+|+.++++|+.
T Consensus 74 ~~~~~~~~~~~~l~----~~~~~~~~~e~Rl~~mE~y 106 (121)
T TIGR02978 74 KPWQAGQSPRQALR----EVKREFRDLERRLRNMERY 106 (121)
T ss_pred hhhhcCCCHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 35555567777777 4666667777777777664
No 62
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.94 E-value=1.2e+02 Score=21.52 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 21 MLDKSIREIERERQGLQTQEKKLISEIKKS 50 (223)
Q Consensus 21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a 50 (223)
.|...+..++.++.+|+...+.+..+++..
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777666654
No 63
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=30.76 E-value=1.7e+02 Score=19.80 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q 043389 27 REIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYK 78 (223)
Q Consensus 27 r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~ 78 (223)
..|..-...++.....+..++..+...++.+.|+. ++++-++..++..
T Consensus 27 ~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~----~~~kLky~~kl~~ 74 (78)
T PF07743_consen 27 AELEELKKEIEERIKELIKELAEAFDAKDWEEAKE----ALRKLKYLQKLLE 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH----HHHHHHHHHHHHH
Confidence 45566677777788888889999999999887765 5666677776653
No 64
>PRK07857 hypothetical protein; Provisional
Probab=30.42 E-value=2.3e+02 Score=21.15 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043389 19 KRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQ 55 (223)
Q Consensus 19 ~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~ 55 (223)
...+|.+|.+||+++-+|=.+--.+-.+|-+.-+..+
T Consensus 30 L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g 66 (106)
T PRK07857 30 IDELREEIDRLDAEILALVKRRTEVSQAIGKARMASG 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3479999999999999999999988888887766554
No 65
>PHA03162 hypothetical protein; Provisional
Probab=29.81 E-value=58 Score=25.35 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=29.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043389 6 GKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQ 53 (223)
Q Consensus 6 g~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~ 53 (223)
|.+..|+.++. +.+|..++.+|+.+-+.|+.+|+.-.--
T Consensus 4 ~~k~~pk~~~t---------mEeLaaeL~kLqmENK~LKkkl~~~~~~ 42 (135)
T PHA03162 4 GSKKCPKAQPT---------MEDLAAEIAKLQLENKALKKKIKEGTDD 42 (135)
T ss_pred CcCCCCccCCC---------HHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 44455655544 6788889999999999999999876554
No 66
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=29.56 E-value=1.7e+02 Score=22.45 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 043389 25 SIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVM 62 (223)
Q Consensus 25 ~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~ 62 (223)
.++.++-+...|++++..++.+|+...+.-+...|-.+
T Consensus 73 ~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~ 110 (120)
T PF04521_consen 73 QLSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVY 110 (120)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45778888899999999999999988776665555444
No 67
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=28.42 E-value=1.5e+02 Score=28.73 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Q 043389 27 REIERERQGLQTQEKKLISEIKKSAKQGQMGAV 59 (223)
Q Consensus 27 r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~a 59 (223)
-.|.|+|++|+| +..+||..+..+++.--
T Consensus 45 ~DLKkEIKKLQR----lRdQIKtW~ss~dIKDK 73 (575)
T KOG2150|consen 45 SDLKKEIKKLQR----LRDQIKTWQSSSDIKDK 73 (575)
T ss_pred HHHHHHHHHHHH----HHHHHHhhhcccccccH
Confidence 456666666665 45577777777765443
No 68
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=28.17 E-value=1.1e+02 Score=19.79 Aligned_cols=32 Identities=41% Similarity=0.638 Sum_probs=15.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 4 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQE 40 (223)
Q Consensus 4 ~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~e 40 (223)
+||+++=| +..| .+-+.+|++.+.....+.+.
T Consensus 16 lfGp~kLP-~~~r----~lG~~ir~fk~~~~~~~~~~ 47 (53)
T PF02416_consen 16 LFGPKKLP-ELAR----SLGKAIREFKKAINEAKEEI 47 (53)
T ss_dssp HS-TTTHH-HHHH----HHHHHHHHHHHHHHHHHH--
T ss_pred HhCchHHH-HHHH----HHHHHHHHHHHHHHhhhhhh
Confidence 68864433 3333 45555666655555555443
No 69
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.88 E-value=3.2e+02 Score=21.93 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 12 AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKS 50 (223)
Q Consensus 12 ~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a 50 (223)
...+.+=+-.+...+...++.....+......+.++..+
T Consensus 53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A 91 (184)
T PRK13455 53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREV 91 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666555555555555555444443
No 70
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.39 E-value=2.4e+02 Score=20.28 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 21 MLDKSIREIERERQGLQTQEKKLISEIKKSAK 52 (223)
Q Consensus 21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k 52 (223)
.|+.++..++.++.+++.+.+.++++.|...+
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k 36 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK 36 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888889888888876
No 71
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=27.35 E-value=32 Score=24.38 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=11.1
Q ss_pred CccccCCCCChHHHHHH
Q 043389 1 MSFLFGKRKTPAELLRE 17 (223)
Q Consensus 1 ~~~~Fg~~~~p~e~~r~ 17 (223)
|++|||+++++.+..++
T Consensus 4 ~~~f~~~k~~Sa~~AKe 20 (81)
T TIGR01215 4 LEFFKSRKKNSAEVAKD 20 (81)
T ss_pred HHHhhcCCCCcHHHHHH
Confidence 35677776666666665
No 72
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.00 E-value=5.3e+02 Score=24.18 Aligned_cols=69 Identities=28% Similarity=0.392 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 043389 18 NKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRT-RHQIEKFYKLKSQLQGVSLRIQ 91 (223)
Q Consensus 18 ~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~-rk~~~~l~~~~~~L~~v~~ql~ 91 (223)
-...|....|.+-++...|.++.+.+-.+|.++.++|.. ++..++.. +.-..++......++.+..+++
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-----~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-----DAEELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345678888888888888888888888899877777653 33333332 2233444555555555554443
No 73
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.64 E-value=2.2e+02 Score=20.90 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 21 MLDKSIREIERERQGLQTQEKKLISEIKK 49 (223)
Q Consensus 21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~ 49 (223)
.|...+..++..+..|++....+..+++.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555443
No 74
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.51 E-value=3.1e+02 Score=22.31 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 15 LRENKRMLDKSIREIERERQGLQT 38 (223)
Q Consensus 15 ~r~~~~~lr~~~r~Ldr~~~~le~ 38 (223)
++.+..+|..+|++|++++.++|.
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~le~ 141 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRLEE 141 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 75
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.93 E-value=1.9e+02 Score=20.85 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 23 DKSIREIERERQGLQTQEKKLISEIK 48 (223)
Q Consensus 23 r~~~r~Ldr~~~~le~~ekkl~~~iK 48 (223)
++++..|..+...+..+..-.+.++|
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 76
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=25.79 E-value=1.3e+02 Score=27.04 Aligned_cols=29 Identities=38% Similarity=0.691 Sum_probs=19.7
Q ss_pred CccccCCC-CChHHHHHHHHHHHHHHHHHHHHHH
Q 043389 1 MSFLFGKR-KTPAELLRENKRMLDKSIREIERER 33 (223)
Q Consensus 1 ~~~~Fg~~-~~p~e~~r~~~~~lr~~~r~Ldr~~ 33 (223)
|..|||++ ++|.+.+|. +|....-+++..
T Consensus 1 M~~~f~k~~ktP~d~Vr~----~rd~l~~~~~~~ 30 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRR----TRDKLKFLDKVR 30 (342)
T ss_pred CCCccCCCCCCHHHHHHH----HHHHHhcccccc
Confidence 67889987 579888885 455555555543
No 77
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=24.89 E-value=5.7e+02 Score=23.85 Aligned_cols=131 Identities=8% Similarity=0.117 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 043389 12 AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSA-------KQGQMGAVKVMAKDLIRTRHQIEKF-YKLKSQL 83 (223)
Q Consensus 12 ~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~-------k~g~~~~ari~Ak~~vr~rk~~~~l-~~~~~~L 83 (223)
...+.+=+-.|...+.+.+.-...++....+.+..+..+- .....++.+++.+-+-..++...++ .....++
T Consensus 27 ~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~I 106 (445)
T PRK13428 27 RRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQV 106 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555444444444444333333332 2222233333333333344444444 2444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHhHhHHHHHhh
Q 043389 84 QGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM-NLPSLQKIMQEFERQNEKMEMVTEVMGD 145 (223)
Q Consensus 84 ~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m-~~~kv~~~M~ef~~e~~~~~~~~e~m~~ 145 (223)
..-..+........-..-++..+.++++. .+ +...-.+++++|-+++..+.-....++.
T Consensus 107 e~ek~~a~~elr~ei~~lAv~~A~kil~~---~l~d~~~~~~lId~~i~~l~~~~~~~~~~~~ 166 (445)
T PRK13428 107 QLLRAQLTRQLRLELGHESVRQAGELVRN---HVADPAQQSATVDRFLDELDAMAPSTADVDY 166 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhccCCCchhhcC
Confidence 44444443333333344456665555543 34 2333468888888877776554444443
No 78
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.76 E-value=1.1e+02 Score=16.41 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043389 21 MLDKSIREIERERQGLQ 37 (223)
Q Consensus 21 ~lr~~~r~Ldr~~~~le 37 (223)
.+|..|+.|+++...|-
T Consensus 5 rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 5 RLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46778888888877664
No 79
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.67 E-value=6.9e+02 Score=24.36 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 67 IRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAM 99 (223)
Q Consensus 67 vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~ 99 (223)
.+.|-.+....+.+ +|+.++.++.....+.++
T Consensus 38 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 69 (567)
T PLN03086 38 AKQREAIEAAQRSR-RLDAIEAQIKADQQMQES 69 (567)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444444444443 788888877755554444
No 80
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=23.60 E-value=34 Score=24.75 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=11.9
Q ss_pred CccccCCCCChHHHHHH
Q 043389 1 MSFLFGKRKTPAELLRE 17 (223)
Q Consensus 1 ~~~~Fg~~~~p~e~~r~ 17 (223)
|+||||++++..+..++
T Consensus 4 ~dff~~r~~~Sa~~Ake 20 (88)
T COG0851 4 FDFFFSRKKNSAETAKE 20 (88)
T ss_pred HHHHHhcCCCcHHHHHH
Confidence 46788877666666665
No 81
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.51 E-value=2.7e+02 Score=19.51 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhh
Q 043389 99 MGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAI 147 (223)
Q Consensus 99 ~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l 147 (223)
+.++++++...|..++..+ ..-...++.+..-+-..+-...+|.++-
T Consensus 20 ~~~~L~~a~~~~~~v~~~~--~~t~~LLd~w~~IlSQte~~~~Ll~dp~ 66 (78)
T PF08651_consen 20 LIETLRSAKSNMNRVQETV--ESTNTLLDKWIRILSQTEHTQRLLLDPE 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4445666666666666665 5566777888888888888888888753
No 82
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=23.51 E-value=41 Score=24.16 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=15.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 4 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQ 39 (223)
Q Consensus 4 ~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ 39 (223)
+||.++ +-+.-+.+-+.+|.+.+..+.....
T Consensus 18 lFGp~K-----LP~~~r~lGk~ir~FK~~~~~~~~d 48 (84)
T PRK00191 18 LFGAKK-----LPDAARSIGRSMRIFKSEVKEMSKD 48 (84)
T ss_pred HhcchH-----HHHHHHHHHHHHHHHHHHHhccccc
Confidence 799543 3333334555555555544444433
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.07 E-value=1e+03 Score=26.16 Aligned_cols=128 Identities=16% Similarity=0.247 Sum_probs=81.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCC--hHHHHHHHHHHHHH----
Q 043389 4 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAK--------QGQ--MGAVKVMAKDLIRT---- 69 (223)
Q Consensus 4 ~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k--------~g~--~~~ari~Ak~~vr~---- 69 (223)
|+|-.+=+.+.+..+..+....+.++..++..++.+-..++..++..-+ .|. ...|.-.|++++|.
T Consensus 429 ~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~ 508 (1486)
T PRK04863 429 LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQ 508 (1486)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHH
Confidence 5663333456677777777777777777777777666666665554322 343 35566677777764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHhH
Q 043389 70 RHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMN-LPSLQKIMQEFERQNEKME 137 (223)
Q Consensus 70 rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~-~~kv~~~M~ef~~e~~~~~ 137 (223)
|....++..+..+|..++.+++.......+...... ..+...+ .+.+.....+.+.+.+..+
T Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1486)
T PRK04863 509 RHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK------RLGKNLDDEDELEQLQEELEARLESLS 571 (1486)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444568888889999999988888876666555443 3333343 6666666666666555443
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.88 E-value=6.4e+02 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 22 LDKSIREIERERQGLQTQEKKLISEIK 48 (223)
Q Consensus 22 lr~~~r~Ldr~~~~le~~ekkl~~~iK 48 (223)
++...+.++.++..+..+-..+..++.
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555444443
No 85
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=21.76 E-value=39 Score=24.91 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=6.9
Q ss_pred ccccCCCCChHHHHH
Q 043389 2 SFLFGKRKTPAELLR 16 (223)
Q Consensus 2 ~~~Fg~~~~p~e~~r 16 (223)
++|||+++.+.+..+
T Consensus 8 ~~lf~~k~~Sa~~AK 22 (97)
T PRK13988 8 EKLFGRQPASASTAR 22 (97)
T ss_pred HHHhcCCCCcHHHHH
Confidence 445554444444443
No 86
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.48 E-value=5.4e+02 Score=21.95 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 043389 57 GAVKVMAKDLIRTRHQIEKFY-KLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 135 (223)
Q Consensus 57 ~~ari~Ak~~vr~rk~~~~l~-~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~ 135 (223)
++.+....-+-..|....++. .....+..=..+........-..-++..+.++++. .+|...-..+++.|-..+..
T Consensus 83 eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~---~~d~~~~~~lid~~i~~l~~ 159 (250)
T PRK14474 83 AADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALAD---LANATLEQQIVGIFIARLEH 159 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHhcc
Confidence 333344344444455544442 33334433333333333333344456666666654 45667777899999988877
Q ss_pred hHh
Q 043389 136 MEM 138 (223)
Q Consensus 136 ~~~ 138 (223)
++.
T Consensus 160 l~~ 162 (250)
T PRK14474 160 LSE 162 (250)
T ss_pred cCH
Confidence 743
Done!